Your job contains 1 sequence.
>psy8860
MSMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFE
LKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS
MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS
MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC
ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGINRLMVHRTNLHIYANIISSNAKI
LISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRSGFRYHGRI
KFLADAARKNGLNF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8860
(374 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_0246 - symbol:SO_0246 "ribosomal protein L6" ... 404 1.1e-37 1
UNIPROTKB|P0AG55 - symbol:rplF "50S ribosomal subunit pro... 390 3.5e-36 1
TIGR_CMR|CPS_0616 - symbol:CPS_0616 "ribosomal protein L6... 383 1.9e-35 1
UNIPROTKB|Q9KNZ9 - symbol:rplF "50S ribosomal protein L6"... 360 5.2e-33 1
TIGR_CMR|VC_2581 - symbol:VC_2581 "ribosomal protein L6" ... 360 5.2e-33 1
TIGR_CMR|CBU_0253 - symbol:CBU_0253 "ribosomal protein L6... 339 8.8e-31 1
TIGR_CMR|GSU_2842 - symbol:GSU_2842 "ribosomal protein L6... 335 2.3e-30 1
TIGR_CMR|SPO_0500 - symbol:SPO_0500 "ribosomal protein L6... 325 2.7e-29 1
TAIR|locus:2207190 - symbol:emb2394 "embryo defective 239... 317 1.9e-28 1
TIGR_CMR|CHY_2294 - symbol:CHY_2294 "ribosomal protein L6... 316 2.4e-28 1
UNIPROTKB|P46898 - symbol:rplF "50S ribosomal protein L6"... 315 3.1e-28 1
TIGR_CMR|SO_0245 - symbol:SO_0245 "ribosomal protein S8" ... 309 1.3e-27 1
UNIPROTKB|P0A7W7 - symbol:rpsH species:83333 "Escherichia... 308 1.7e-27 1
UNIPROTKB|P66311 - symbol:rplF "50S ribosomal protein L6"... 307 2.2e-27 1
UNIPROTKB|Q9KNZ8 - symbol:rpsH "30S ribosomal protein S8"... 302 7.3e-27 1
TIGR_CMR|VC_2582 - symbol:VC_2582 "ribosomal protein S8" ... 302 7.3e-27 1
TIGR_CMR|DET_0489 - symbol:DET_0489 "ribosomal protein L6... 301 9.4e-27 1
TIGR_CMR|CJE_1860 - symbol:CJE_1860 "ribosomal protein L6... 299 1.5e-26 1
TIGR_CMR|BA_0125 - symbol:BA_0125 "ribosomal protein L6" ... 293 6.6e-26 1
TIGR_CMR|ECH_0424 - symbol:ECH_0424 "ribosomal protein L6... 278 2.6e-24 1
TIGR_CMR|CPS_0615 - symbol:CPS_0615 "ribosomal protein S8... 276 4.2e-24 1
POMBASE|SPAC12G12.08 - symbol:mrpl6 "mitochondrial riboso... 267 3.8e-23 1
TIGR_CMR|CHY_2295 - symbol:CHY_2295 "ribosomal protein S8... 263 1.0e-22 1
TIGR_CMR|CBU_0254 - symbol:CBU_0254 "ribosomal protein L1... 258 3.4e-22 1
TIGR_CMR|SO_0247 - symbol:SO_0247 "ribosomal protein L18"... 258 3.4e-22 1
TIGR_CMR|CBU_0252 - symbol:CBU_0252 "ribosomal protein S8... 253 1.1e-21 1
TIGR_CMR|CPS_0617 - symbol:CPS_0617 "ribosomal protein L1... 251 1.9e-21 1
TIGR_CMR|GSU_2843 - symbol:GSU_2843 "ribosomal protein S8... 246 6.3e-21 1
TIGR_CMR|BA_0124 - symbol:BA_0124 "ribosomal protein S8" ... 245 8.0e-21 1
SGD|S000001190 - symbol:MRPL6 "Mitochondrial ribosomal pr... 244 1.0e-20 1
UNIPROTKB|Q0BYC8 - symbol:rpsH "30S ribosomal protein S8"... 241 2.1e-20 1
UNIPROTKB|P0C018 - symbol:rplR "50S ribosomal subunit pro... 239 3.5e-20 1
UNIPROTKB|Q9KP00 - symbol:rplR "50S ribosomal protein L18... 238 4.5e-20 1
TIGR_CMR|VC_2580 - symbol:VC_2580 "ribosomal protein L18"... 238 4.5e-20 1
ASPGD|ASPL0000044544 - symbol:AN1770 species:162425 "Emer... 232 2.4e-19 1
UNIPROTKB|P66625 - symbol:rpsH "30S ribosomal protein S8"... 227 9.6e-19 1
TIGR_CMR|ECH_0423 - symbol:ECH_0423 "ribosomal protein S8... 223 2.8e-18 1
TIGR_CMR|SPO_0499 - symbol:SPO_0499 "ribosomal protein S8... 223 2.8e-18 1
TIGR_CMR|CHY_2293 - symbol:CHY_2293 "ribosomal protein L1... 221 4.8e-18 1
TIGR_CMR|APH_0294 - symbol:APH_0294 "ribosomal protein S8... 214 3.1e-17 1
TIGR_CMR|GSU_2841 - symbol:GSU_2841 "ribosomal protein L1... 211 6.8e-17 1
TIGR_CMR|BA_0126 - symbol:BA_0126 "ribosomal protein L18"... 209 1.2e-16 1
TIGR_CMR|DET_0488 - symbol:DET_0488 "ribosomal protein S8... 209 1.2e-16 1
CGD|CAL0005711 - symbol:MRPL6 species:5476 "Candida albic... 203 5.5e-16 1
TIGR_CMR|APH_0295 - symbol:APH_0295 "ribosomal protein L6... 196 3.4e-15 1
TIGR_CMR|NSE_0280 - symbol:NSE_0280 "ribosomal protein S8... 195 4.4e-15 1
TIGR_CMR|DET_0490 - symbol:DET_0490 "ribosomal protein L1... 193 7.4e-15 1
TIGR_CMR|CJE_1861 - symbol:CJE_1861 "ribosomal protein S8... 188 2.7e-14 1
TAIR|locus:2007690 - symbol:EMB3105 "EMBRYO DEFECTIVE 310... 185 5.8e-14 1
UNIPROTKB|P66076 - symbol:rplR "50S ribosomal protein L18... 179 2.7e-13 1
TIGR_CMR|SPO_0501 - symbol:SPO_0501 "ribosomal protein L1... 177 4.5e-13 1
UNIPROTKB|P0C492 - symbol:rps8 "30S ribosomal protein S8,... 176 5.8e-13 1
UNIPROTKB|P0C493 - symbol:rps8 "30S ribosomal protein S8,... 176 5.8e-13 1
UNIPROTKB|P0C494 - symbol:rps8 "30S ribosomal protein S8,... 176 5.8e-13 1
UNIPROTKB|Q6END8 - symbol:rps8 "30S ribosomal protein S8,... 176 5.8e-13 1
TIGR_CMR|NSE_0281 - symbol:NSE_0281 "ribosomal protein L6... 170 2.7e-12 1
POMBASE|SPCC613.06 - symbol:rpl902 "60S ribosomal protein... 168 4.5e-12 1
POMBASE|SPAC4G9.16c - symbol:rpl901 "60S ribosomal protei... 155 1.2e-10 1
ASPGD|ASPL0000053695 - symbol:AN9465 species:162425 "Emer... 144 2.0e-09 1
TIGR_CMR|APH_0296 - symbol:APH_0296 "50S ribosomal protei... 139 6.9e-09 1
GENEDB_PFALCIPARUM|PFF0650w - symbol:PFF0650w "ribosomal ... 145 2.4e-08 1
UNIPROTKB|Q6LFD5 - symbol:RPL18 "Putative 50S ribosomal p... 145 2.4e-08 1
DICTYBASE|DDB_G0294038 - symbol:mrpl6 "ribosomal protein ... 131 5.2e-08 1
TAIR|locus:2062200 - symbol:AT2G18400 species:3702 "Arabi... 121 6.4e-07 1
TIGR_CMR|ECH_0425 - symbol:ECH_0425 "ribosomal protein L1... 108 1.7e-05 1
TAIR|locus:2180310 - symbol:AT5G27820 species:3702 "Arabi... 108 1.7e-05 1
TIGR_CMR|CJE_1859 - symbol:CJE_1859 "ribosomal protein L1... 103 5.8e-05 1
SGD|S000005011 - symbol:RPL9B "Ribosomal 60S subunit prot... 116 7.4e-05 1
CGD|CAL0003957 - symbol:RPL9B species:5476 "Candida albic... 115 0.00010 1
SGD|S000003115 - symbol:RPL9A "Ribosomal 60S subunit prot... 115 0.00010 1
GENEDB_PFALCIPARUM|PF13_0129 - symbol:PF13_0129 "ribosoma... 107 0.00094 1
UNIPROTKB|Q8IE85 - symbol:PF13_0129 "60S ribosomal protei... 107 0.00094 1
>TIGR_CMR|SO_0246 [details] [associations]
symbol:SO_0246 "ribosomal protein L6" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_715886.1
ProteinModelPortal:Q8EK54 SMR:Q8EK54 GeneID:1168129
KEGG:son:SO_0246 PATRIC:23520185 Uniprot:Q8EK54
Length = 177
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 74/156 (47%), Positives = 113/156 (72%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ IP VEVTLN +T+KG G L + NN VN+ ++ V+ F + + A +
Sbjct: 4 VAKAPVSIPAGVEVTLNEQTLTVKGAKGSLTRVINNAVNVVIENGVIKFLPVEGAVGAWA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+GT R+++NNM++GV++GFE+KL+L+GVG+RAK+ ++L LGFSHP+++K+P +
Sbjct: 64 QAGTTRALVNNMVVGVSQGFERKLKLVGVGYRAKLVGADIDLTLGFSHPLVHKLPAGVTA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E PSQT+I+++G++KQ +G VAAEIR Y PEPYKG
Sbjct: 124 ECPSQTDIVLRGVDKQLIGQVAAEIRGYRPPEPYKG 159
>UNIPROTKB|P0AG55 [details] [associations]
symbol:rplF "50S ribosomal subunit protein L6"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:X01563 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0046677 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM
PDB:2RDO PDBsum:2RDO eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y
PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS
PDB:1EG0 PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R
PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19
PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR
PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:487D PDB:4GAR
PDB:4GAU PDBsum:1EG0 PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6
PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA
PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM
PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG
PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ
PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N
PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P
PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT
PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS
PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR
PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T
PDBsum:487D PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05498 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
PIR:D65123 RefSeq:NP_417764.1 RefSeq:YP_492127.1
ProteinModelPortal:P0AG55 SMR:P0AG55 DIP:DIP-35860N IntAct:P0AG55
MINT:MINT-1244940 PaxDb:P0AG55 PRIDE:P0AG55
EnsemblBacteria:EBESCT00000002485 EnsemblBacteria:EBESCT00000014824
GeneID:12934434 GeneID:947803 KEGG:ecj:Y75_p3871 KEGG:eco:b3305
PATRIC:32122042 EchoBASE:EB0862 EcoGene:EG10869
BioCyc:EcoCyc:EG10869-MONOMER BioCyc:ECOL316407:JW3267-MONOMER
EvolutionaryTrace:P0AG55 Genevestigator:P0AG55 Uniprot:P0AG55
Length = 177
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 72/156 (46%), Positives = 108/156 (69%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P V+V +N IT+KG G L + N+ V +K+ N L F + +
Sbjct: 4 VAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+GT R+++N+M+IGVT+GF KKLQL+GVG+RA ++ N +NL LGFSHP+ +++P I
Sbjct: 64 QAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+QTEI++KG +KQ +G VAA++R Y +PEPYKG
Sbjct: 124 ECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKG 159
>TIGR_CMR|CPS_0616 [details] [associations]
symbol:CPS_0616 "ribosomal protein L6" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
HSSP:Q5SHQ3 RefSeq:YP_267366.1 ProteinModelPortal:Q488Z8 SMR:Q488Z8
STRING:Q488Z8 PRIDE:Q488Z8 GeneID:3522781 KEGG:cps:CPS_0616
PATRIC:21464559 BioCyc:CPSY167879:GI48-703-MONOMER Uniprot:Q488Z8
Length = 177
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 76/156 (48%), Positives = 104/156 (66%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P V +TL+ IT+KGP+G L + ++ V + + N + + + + A +
Sbjct: 4 VAKAPVVVPAGVTITLSGQDITVKGPIGELSRTIHSDVVVSQEENNIITNIVADVKGAWA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+GT R++INNM+ GV+KGFEKKL L GVG+RAK L+L LGFSHPI + IP I C
Sbjct: 64 QAGTTRALINNMVEGVSKGFEKKLVLQGVGYRAKAAGKSLDLSLGFSHPIKHAIPEGITC 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTE+ +KG +K VG AA IR Y KPEPYKG
Sbjct: 124 ETPSQTEVTLKGCDKHLVGQTAANIRAYRKPEPYKG 159
>UNIPROTKB|Q9KNZ9 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 PIR:G82057 RefSeq:NP_232209.1
ProteinModelPortal:Q9KNZ9 SMR:Q9KNZ9 DNASU:2615598 GeneID:2615598
KEGG:vch:VC2581 PATRIC:20084188 Uniprot:Q9KNZ9
Length = 177
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 74/156 (47%), Positives = 102/156 (65%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ IP VEV LN +IT+KG G L + +N V I + N L F A +
Sbjct: 4 VAKAPVAIPAGVEVKLNGQEITIKGAKGELTRVFHNGVVIAQEDNQLTFGPREGVANAWA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+GT R+++ NM++GVT+GF KKL L GVG+RA ++ N + L LGFSHP+ +++P +
Sbjct: 64 QAGTARALVKNMVVGVTEGFTKKLVLKGVGYRAAMKGNAVGLTLGFSHPVEHELPAGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E PSQTEI++ G +KQ VG VAA+IR Y PEPYKG
Sbjct: 124 ECPSQTEIVLTGCDKQVVGQVAADIRSYRAPEPYKG 159
>TIGR_CMR|VC_2581 [details] [associations]
symbol:VC_2581 "ribosomal protein L6" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0097 KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 TIGRFAMs:TIGR03654
ProtClustDB:PRK05498 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
PIR:G82057 RefSeq:NP_232209.1 ProteinModelPortal:Q9KNZ9 SMR:Q9KNZ9
DNASU:2615598 GeneID:2615598 KEGG:vch:VC2581 PATRIC:20084188
Uniprot:Q9KNZ9
Length = 177
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 74/156 (47%), Positives = 102/156 (65%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ IP VEV LN +IT+KG G L + +N V I + N L F A +
Sbjct: 4 VAKAPVAIPAGVEVKLNGQEITIKGAKGELTRVFHNGVVIAQEDNQLTFGPREGVANAWA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+GT R+++ NM++GVT+GF KKL L GVG+RA ++ N + L LGFSHP+ +++P +
Sbjct: 64 QAGTARALVKNMVVGVTEGFTKKLVLKGVGYRAAMKGNAVGLTLGFSHPVEHELPAGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E PSQTEI++ G +KQ VG VAA+IR Y PEPYKG
Sbjct: 124 ECPSQTEIVLTGCDKQVVGQVAADIRSYRAPEPYKG 159
>TIGR_CMR|CBU_0253 [details] [associations]
symbol:CBU_0253 "ribosomal protein L6" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_819297.1
ProteinModelPortal:Q83ER1 SMR:Q83ER1 GeneID:1208134
KEGG:cbu:CBU_0253 PATRIC:17929199
BioCyc:CBUR227377:GJ7S-259-MONOMER Uniprot:Q83ER1
Length = 178
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 72/157 (45%), Positives = 102/157 (64%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNI-KNDSNVLYFTAINNSRIAK 179
+ K PI IP VEV + +IT+KG LG L + + V + K D+ + A N+S +
Sbjct: 5 VAKNPIKIPTGVEVNVAGQQITVKGKLGTLTRVIHRAVKVTKTDAELQTICA-NDSPGSN 63
Query: 180 SMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDII 239
+++GT R+++ NM+ GV GF++KL ++GVG+RAK E LNL +G SHP+ ++P I
Sbjct: 64 ALAGTARAVLANMVQGVHTGFQRKLVMVGVGYRAKAEGKKLNLTVGLSHPVNIEMPEGIT 123
Query: 240 CETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTEI++KG +KQ V VAA IR PEPYKG
Sbjct: 124 VETPSQTEIIVKGADKQRVSQVAANIREIRPPEPYKG 160
>TIGR_CMR|GSU_2842 [details] [associations]
symbol:GSU_2842 "ribosomal protein L6" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_953885.1
ProteinModelPortal:Q749A2 GeneID:2687150 KEGG:gsu:GSU2842
PATRIC:22028531 BioCyc:GSUL243231:GH27-2808-MONOMER Uniprot:Q749A2
Length = 179
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 65/156 (41%), Positives = 104/156 (66%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI IP V+V + + +T++GP G L + + V+++ + + ++ A+S
Sbjct: 4 IGKRPIEIPSGVKVEFSDSVLTIEGPKGKLSRQVMDGVSLEITPSSIEVKRADDGLKARS 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
G R+++NNM++GVTKGFE+ L++ GVG+RA+ + + LNL LG+SHPI Y +P II
Sbjct: 64 AHGLTRTLVNNMVVGVTKGFERALEINGVGYRAEAKGDVLNLSLGYSHPINYALPAGIIV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E T++++KGI+K+ VG AA+IR + PEPYKG
Sbjct: 124 EVDKMTKLVVKGIDKELVGQTAAKIRSFRGPEPYKG 159
>TIGR_CMR|SPO_0500 [details] [associations]
symbol:SPO_0500 "ribosomal protein L6" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:YP_165762.1
ProteinModelPortal:Q5LW43 SMR:Q5LW43 GeneID:3195456
KEGG:sil:SPO0500 PATRIC:23374261 Uniprot:Q5LW43
Length = 177
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 63/156 (40%), Positives = 97/156 (62%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK P+ +P V ++ I +KGP G + V I D NV+ T S+ A+
Sbjct: 4 IGKKPVELPSGVSAAVSGQTIEVKGPKGARSFTATDDVTITVDGNVVSITPRGMSKRARQ 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
G R+++ N++ GVT+GF+K+L++ GVG+RA + N L L LG+SH + + +P +
Sbjct: 64 QWGMSRTMVANLVAGVTEGFKKELEITGVGYRANAQGNTLKLNLGYSHDVDFTVPAGVTV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
TP QTEI+++GI++Q VG VAA+IR + PEPYKG
Sbjct: 124 STPKQTEIVVEGIDQQQVGEVAAKIREWRSPEPYKG 159
>TAIR|locus:2207190 [details] [associations]
symbol:emb2394 "embryo defective 2394" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0015934 "large ribosomal subunit"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0016020
GO:GO:0006412 GO:GO:0009941 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AC000098 EMBL:AY040077 EMBL:AF360265
EMBL:AY085715 IPI:IPI00527924 PIR:C86186 RefSeq:NP_172011.1
UniGene:At.24632 UniGene:At.68070 ProteinModelPortal:O23049
SMR:O23049 STRING:O23049 PaxDb:O23049 PRIDE:O23049 ProMEX:O23049
EnsemblPlants:AT1G05190.1 GeneID:839273 KEGG:ath:AT1G05190
GeneFarm:69 TAIR:At1g05190 eggNOG:COG0097 HOGENOM:HOG000039903
InParanoid:O23049 KO:K02933 OMA:INNMVVG PhylomeDB:O23049
ProtClustDB:CLSN2681987 EvolutionaryTrace:O23049
Genevestigator:O23049 GermOnline:AT1G05190 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 TIGRFAMs:TIGR03654 Uniprot:O23049
Length = 223
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 67/172 (38%), Positives = 100/172 (58%)
Query: 106 ISTASGIITDRKARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNI-KNDS 164
+ +S I +++R +GK PI +P NV + L + +KGPLG L V + K +S
Sbjct: 32 VGYSSKTIECKESR-IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEES 90
Query: 165 NVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLIL 224
L +R A M G R++ +NM++GV+KGFEKKL L+GVG+RA ++ L L L
Sbjct: 91 GFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNL 150
Query: 225 GFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
GFSHP+ +IP + + T I + G +K +G AA +R++ PEPYKG
Sbjct: 151 GFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKG 202
>TIGR_CMR|CHY_2294 [details] [associations]
symbol:CHY_2294 "ribosomal protein L6" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 RefSeq:YP_361103.1 HSSP:Q5SHQ3
ProteinModelPortal:Q3A9T1 SMR:Q3A9T1 STRING:Q3A9T1 GeneID:3726911
KEGG:chy:CHY_2294 PATRIC:21277659
BioCyc:CHYD246194:GJCN-2293-MONOMER Uniprot:Q3A9T1
Length = 182
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 63/156 (40%), Positives = 99/156 (63%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+G+ PI +P VEV + +T+KGP G L + + + I D + + ++ + K+
Sbjct: 4 IGRKPIPVPQGVEVKVEGTTVTVKGPKGSLTREFHPDMKITFDGSQILVERPSDEKEHKA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+ G R++INNMI+GVT G++K L+L+GVG+RA + L L +G+SHP+ P I
Sbjct: 64 LHGLTRTLINNMIVGVTNGYQKSLELVGVGYRAAKQGRKLVLTVGYSHPVEMDPPEGIEI 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+Q +I++KGI+K+ VG+ AA IR +PEPYKG
Sbjct: 124 EVPAQNQIIVKGIDKELVGNFAATIRAVREPEPYKG 159
>UNIPROTKB|P46898 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 EMBL:L47971 EMBL:D64125 PIR:B69695
RefSeq:NP_388012.1 ProteinModelPortal:P46898 SMR:P46898
EnsemblBacteria:EBBACT00000001337 GeneID:938229 KEGG:bsu:BSU01310
PATRIC:18971771 GenoList:BSU01310 BioCyc:BSUB:BSU01310-MONOMER
Uniprot:P46898
Length = 179
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 68/158 (43%), Positives = 103/158 (65%)
Query: 121 MGKMPIFIPPNVEVTLNSNK-ITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAK 179
+GK + IP +V VTLN N + +KGP G L + + + IK + NVL ++ + +
Sbjct: 4 VGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHR 63
Query: 180 SMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFD-I 238
++ GT RS++ NM+ GV+KGFE+ L+L+GVG+RA N L L +G+SHP+ +P + I
Sbjct: 64 ALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEI-VPEEGI 122
Query: 239 ICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E PSQT++++KG +K+ VG +AA IR PEPYKG
Sbjct: 123 EIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKG 160
>TIGR_CMR|SO_0245 [details] [associations]
symbol:SO_0245 "ribosomal protein S8" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047
HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG
ProtClustDB:PRK00136 RefSeq:NP_715885.1 ProteinModelPortal:Q8EK55
SMR:Q8EK55 GeneID:1168128 KEGG:son:SO_0245 PATRIC:23520183
Uniprot:Q8EK55
Length = 130
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 62/122 (50%), Positives = 81/122 (66%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
MSM DPIADMLT IRNGQ N +LK+EGYI D+ + + K E
Sbjct: 1 MSMQDPIADMLTRIRNGQAANKVSVKMPSAKLKVAIAKLLKEEGYIADYAVAD--EAKPE 58
Query: 61 LKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
L+I LKY+ +PV+E ++RVSRPGLRIYK K+ +PK+M GLG+ I+ST+ G++TDR AR
Sbjct: 59 LEITLKYFQGQPVVETIQRVSRPGLRIYKGKNELPKVMGGLGVAIVSTSKGLMTDRAARL 118
Query: 121 MG 122
G
Sbjct: 119 AG 120
>UNIPROTKB|P0A7W7 [details] [associations]
symbol:rpsH species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0019843 "rRNA binding" evidence=IEA;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053
EMBL:X01563 GO:GO:0006417 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006412
EMBL:U18997 GO:GO:0003735 GO:GO:0019843 GO:GO:0043488 PDB:3J00
PDBsum:3J00 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV
PDBsum:3IZW GO:GO:0022627 eggNOG:COG0096 PANTHER:PTHR11758
SUPFAM:SSF56047 PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ PDB:1EG0
PDBsum:1EG0 HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994
PDB:4GAS PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G
PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB
PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD
PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0
PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1
PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S
PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10
PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB
PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I
PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87
PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9
PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN
PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH
PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0
PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K
PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C
PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z
PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z
PDBsum:3J10 PDBsum:3J13 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ
PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP
PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I
PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2 OMA:QRVSKPG
ProtClustDB:PRK00136 PIR:E65123 RefSeq:NP_417765.1
RefSeq:YP_492126.1 PDB:1S03 PDBsum:1S03 ProteinModelPortal:P0A7W7
SMR:P0A7W7 DIP:DIP-47901N IntAct:P0A7W7 MINT:MINT-1318565
PaxDb:P0A7W7 PRIDE:P0A7W7 EnsemblBacteria:EBESCT00000001349
EnsemblBacteria:EBESCT00000016714 GeneID:12934408 GeneID:947802
KEGG:ecj:Y75_p3870 KEGG:eco:b3306 PATRIC:32122044 EchoBASE:EB0900
EcoGene:EG10907 BioCyc:EcoCyc:EG10907-MONOMER
BioCyc:ECOL316407:JW3268-MONOMER EvolutionaryTrace:P0A7W7
Genevestigator:P0A7W7 Uniprot:P0A7W7
Length = 130
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 61/122 (50%), Positives = 80/122 (65%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
MSM DPIADMLT IRNGQ N VLK+EG+I+DF + K E
Sbjct: 1 MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEG--DTKPE 58
Query: 61 LKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
L++ LKY+ + V+E ++RVSRPGLRIYK KD +PK+M GLG+ ++ST+ G++TDR AR
Sbjct: 59 LELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQ 118
Query: 121 MG 122
G
Sbjct: 119 AG 120
>UNIPROTKB|P66311 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0005886
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0005840 EMBL:BX842574
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 PIR:B70644
RefSeq:NP_215233.1 RefSeq:NP_335164.1 RefSeq:YP_006514063.1
ProteinModelPortal:P66311 SMR:P66311 PRIDE:P66311
EnsemblBacteria:EBMYCT00000000628 EnsemblBacteria:EBMYCT00000070706
GeneID:13318608 GeneID:888433 GeneID:926037 KEGG:mtc:MT0744
KEGG:mtu:Rv0719 KEGG:mtv:RVBD_0719 PATRIC:18123371
TubercuList:Rv0719 Uniprot:P66311
Length = 179
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 56/157 (35%), Positives = 97/157 (61%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNI-KNDSNVLYFTAINNSRIAK 179
+GK PI +P V+VT+ I++KGP G L + + +ND + T ++ R +
Sbjct: 4 IGKQPIPVPAGVDVTIEGQSISVKGPKGTLGLTVAEPIKVARNDDGAIVVTRPDDERRNR 63
Query: 180 SMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDII 239
S+ G R++++N++ GVT+G+ K+++ GVG+R +++ + L LG+SHP++ + P I
Sbjct: 64 SLHGLSRTLVSNLVTGVTQGYTTKMEIFGVGYRVQLKGSNLEFALGYSHPVVIEAPEGIT 123
Query: 240 CETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
+ T+ + GI+KQ VG +AA IRR +P+PYKG
Sbjct: 124 FAVQAPTKFTVSGIDKQKVGQIAANIRRLRRPDPYKG 160
>UNIPROTKB|Q9KNZ8 [details] [associations]
symbol:rpsH "30S ribosomal protein S8" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000630 Pfam:PF00410
PROSITE:PS00053 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047 HAMAP:MF_01302_B
KO:K02994 OMA:QRVSKPG ProtClustDB:PRK00136 PIR:H82057
RefSeq:NP_232210.1 ProteinModelPortal:Q9KNZ8 SMR:Q9KNZ8
DNASU:2615599 GeneID:2615599 KEGG:vch:VC2582 PATRIC:20084190
Uniprot:Q9KNZ8
Length = 130
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 61/122 (50%), Positives = 79/122 (64%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
MSM DPI+DMLT IRNGQ N +LK EGYI DF + + K E
Sbjct: 1 MSMQDPISDMLTRIRNGQAANKVAVKMPSSKLKVAIAALLKAEGYIADFAVEG--EVKAE 58
Query: 61 LKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
L+I LKY+ +PVIE +KRVSRPGLR+YK KD +P +M GLG+ ++ST+ G+++DR AR
Sbjct: 59 LEITLKYFQAKPVIEQIKRVSRPGLRVYKKKDELPSVMGGLGVAVVSTSKGLMSDRAARK 118
Query: 121 MG 122
G
Sbjct: 119 AG 120
>TIGR_CMR|VC_2582 [details] [associations]
symbol:VC_2582 "ribosomal protein S8" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047
HAMAP:MF_01302_B KO:K02994 OMA:QRVSKPG ProtClustDB:PRK00136
PIR:H82057 RefSeq:NP_232210.1 ProteinModelPortal:Q9KNZ8 SMR:Q9KNZ8
DNASU:2615599 GeneID:2615599 KEGG:vch:VC2582 PATRIC:20084190
Uniprot:Q9KNZ8
Length = 130
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 61/122 (50%), Positives = 79/122 (64%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
MSM DPI+DMLT IRNGQ N +LK EGYI DF + + K E
Sbjct: 1 MSMQDPISDMLTRIRNGQAANKVAVKMPSSKLKVAIAALLKAEGYIADFAVEG--EVKAE 58
Query: 61 LKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
L+I LKY+ +PVIE +KRVSRPGLR+YK KD +P +M GLG+ ++ST+ G+++DR AR
Sbjct: 59 LEITLKYFQAKPVIEQIKRVSRPGLRVYKKKDELPSVMGGLGVAVVSTSKGLMSDRAARK 118
Query: 121 MG 122
G
Sbjct: 119 AG 120
>TIGR_CMR|DET_0489 [details] [associations]
symbol:DET_0489 "ribosomal protein L6" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015934 "large ribosomal
subunit" evidence=ISS] InterPro:IPR000702 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 RefSeq:YP_181233.1 HSSP:P32969
ProteinModelPortal:Q3Z966 STRING:Q3Z966 GeneID:3230241
KEGG:det:DET0489 PATRIC:21608047 BioCyc:DETH243164:GJNF-489-MONOMER
Uniprot:Q3Z966
Length = 182
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 59/156 (37%), Positives = 89/156 (57%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GKMPI +PP V V + N +T+KGP G L + V I D + L + + A+S
Sbjct: 4 IGKMPIKVPPGVTVDIKGNDVTVKGPKGTLNRTFRPEVTITRDGDYLVVAPVGTDKAARS 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
G R++++NMI+GV GF+K L+++GVG RA + N + +G+SH + P I
Sbjct: 64 FFGLSRTLLDNMIVGVKDGFDKNLEIVGVGMRADKDGNNIIFKVGYSHTVTVAPPAGITL 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
T++ + GINK+ V +AAEIR KP+ Y G
Sbjct: 124 SVDGTTKVKVSGINKEEVSQMAAEIRSIRKPDHYMG 159
>TIGR_CMR|CJE_1860 [details] [associations]
symbol:CJE_1860 "ribosomal protein L6" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:YP_179830.1
ProteinModelPortal:Q5HSA5 STRING:Q5HSA5 GeneID:3232487
KEGG:cjr:CJE1860 PATRIC:20045552
BioCyc:CJEJ195099:GJC0-1899-MONOMER Uniprot:Q5HSA5
Length = 178
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 70/158 (44%), Positives = 96/158 (60%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLK-GPLGILKQNKNNL-VNIKNDSNVLYFTAINNSRIA 178
+GK PI IP VEV L N + K G L K N+ V IK D+N+L F+ R +
Sbjct: 4 IGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVEIK-DNNIL-FSPKGEDRQS 61
Query: 179 KSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDI 238
++ GT R++ N+++G+T+GF K L++ GVG++A ++ L L LGFSHPI Y IP I
Sbjct: 62 RAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKVLELSLGFSHPINYDIPEGI 121
Query: 239 ICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
T I +KG +KQ VG VAA+IR + PEPYKG
Sbjct: 122 EIVVDKNT-IAVKGSDKQVVGQVAAQIREFRPPEPYKG 158
>TIGR_CMR|BA_0125 [details] [associations]
symbol:BA_0125 "ribosomal protein L6" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 RefSeq:NP_842693.1 RefSeq:YP_016730.1
RefSeq:YP_026411.1 HSSP:P02391 ProteinModelPortal:Q81VR5 SMR:Q81VR5
DNASU:1087011 EnsemblBacteria:EBBACT00000009556
EnsemblBacteria:EBBACT00000015765 EnsemblBacteria:EBBACT00000024025
GeneID:1087011 GeneID:2818227 GeneID:2851257 KEGG:ban:BA_0125
KEGG:bar:GBAA_0125 KEGG:bat:BAS0125 ProtClustDB:PRK05498
BioCyc:BANT260799:GJAJ-136-MONOMER
BioCyc:BANT261594:GJ7F-138-MONOMER HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 Uniprot:Q81VR5
Length = 179
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 64/157 (40%), Positives = 97/157 (61%)
Query: 121 MGKMPIFIPPNVEVTL-NSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAK 179
+GK + IP V +T+ N +T+KGP G L + N + IK + N L + + +
Sbjct: 4 IGKKILEIPAGVTITVAEDNTVTVKGPKGELTRTFNADMLIKIEENTLTVERPSEQKEHR 63
Query: 180 SMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDII 239
++ GT R++I NM+ GVT+GF + L+L+GVG+RA+ + + L L +G+SHP+ +
Sbjct: 64 ALHGTTRALIGNMVEGVTEGFARGLELVGVGYRAQKQGDKLVLSVGYSHPVEMTPEAGLE 123
Query: 240 CETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+ T+I+IKGI+KQ VG AA IR PEPYKG
Sbjct: 124 VEVPAPTKIVIKGIDKQRVGEFAANIRAVRAPEPYKG 160
>TIGR_CMR|ECH_0424 [details] [associations]
symbol:ECH_0424 "ribosomal protein L6" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6
RefSeq:YP_507242.1 ProteinModelPortal:Q2GH41 STRING:Q2GH41
GeneID:3928038 KEGG:ech:ECH_0424 PATRIC:20576325
BioCyc:ECHA205920:GJNR-425-MONOMER Uniprot:Q2GH41
Length = 178
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 70/175 (40%), Positives = 103/175 (58%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNN--LVNIKNDSNVLYFTAINNSRI- 177
+G MPI IP NV+ L N++ LK LK + L +I + VL+ +N+ I
Sbjct: 4 VGSMPIAIPSNVQADLVGNQLILKNNENSLKLTLDYGVLCDITDGKIVLH---VNDKSIK 60
Query: 178 AKSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFD 237
++ M GT RSIINN IG+++G +L++ GVG++A++ YL+L LGFSH + YKIP
Sbjct: 61 SRVMWGTYRSIINNYAIGLSQGLVVELEVNGVGYKAEVNGEYLSLSLGFSHGVKYKIPTG 120
Query: 238 IICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG----INRLMVHRTNLH 288
I+ + T+IL+KG +KQ V VA++I K PYKG I VHR ++
Sbjct: 121 IVIQCVKPTQILVKGFDKQKVYMVASDICSIRKYNPYKGKGISIKGRYVHRKEVN 175
>TIGR_CMR|CPS_0615 [details] [associations]
symbol:CPS_0615 "ribosomal protein S8" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000630
Pfam:PF00410 PROSITE:PS00053 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047 HAMAP:MF_01302_B
HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG RefSeq:YP_267365.1
ProteinModelPortal:Q488Z9 SMR:Q488Z9 STRING:Q488Z9 GeneID:3522411
KEGG:cps:CPS_0615 PATRIC:21464557
BioCyc:CPSY167879:GI48-702-MONOMER Uniprot:Q488Z9
Length = 129
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 58/120 (48%), Positives = 77/120 (64%)
Query: 3 MSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFELK 62
M+DPIADM T IRNGQ +LK+EGYI +F + + K EL
Sbjct: 2 MTDPIADMFTRIRNGQSAAKVAVQMPSSKVKVAIATLLKEEGYISEFSVSG--EVKPELA 59
Query: 63 ILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSMG 122
+ LKY+ + VIE +KRVSRPGLRIYK+ D +PK++ G+G+ IIST+ G++TDR ARS G
Sbjct: 60 VTLKYFEGKEVIEKIKRVSRPGLRIYKSCDELPKVLAGMGIAIISTSKGLMTDRAARSAG 119
>POMBASE|SPAC12G12.08 [details] [associations]
symbol:mrpl6 "mitochondrial ribosomal protein subunit
L16 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
PomBase:SPAC12G12.08 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005762 GO:GO:0003735 GO:GO:0032543
GO:GO:0019843 eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PIR:S62539 RefSeq:NP_592890.1
ProteinModelPortal:Q09865 STRING:Q09865 EnsemblFungi:SPAC12G12.08.1
GeneID:2542846 KEGG:spo:SPAC12G12.08 HOGENOM:HOG000039904
OMA:KRRPEPY OrthoDB:EOG4RZ28K NextBio:20803887 Uniprot:Q09865
Length = 213
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 55/165 (33%), Positives = 98/165 (59%)
Query: 118 ARS-MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINN-- 174
ARS +GK I +P N++ L ++ + GP G L N +N+ +++L N
Sbjct: 30 ARSYVGKKEIIVPKNIQFDLEGEQLQITGPHGTLNMRFPNYLNLSKTNDILKVGMDANIE 89
Query: 175 ---SRIAKSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPIL 231
++ ++M GT R+I+ N + GVT ++ ++L+G+G+R + ++L +G+++ IL
Sbjct: 90 KQATKKQRAMWGTTRAILANNVKGVTMYWQSIIKLVGIGYRTSLNDGNIHLKIGYANDIL 149
Query: 232 YKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
IP D+ E P+ T ++++GI++Q V AA+IR + KPEPYKG
Sbjct: 150 VSIPTDVQVENPTPTSLVLRGIDRQKVTQFAAKIRSFKKPEPYKG 194
>TIGR_CMR|CHY_2295 [details] [associations]
symbol:CHY_2295 "ribosomal protein S8" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758
SUPFAM:SSF56047 HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994
OMA:QRVSKPG ProtClustDB:PRK00136 RefSeq:YP_361104.1
ProteinModelPortal:Q3A9T0 SMR:Q3A9T0 STRING:Q3A9T0 PRIDE:Q3A9T0
GeneID:3728871 KEGG:chy:CHY_2295 PATRIC:21277661
BioCyc:CHYD246194:GJCN-2294-MONOMER Uniprot:Q3A9T0
Length = 132
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 57/123 (46%), Positives = 76/123 (61%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
M M+DPIAD LT IRN +V +LK+EG+IKD+ I+ K
Sbjct: 1 MVMTDPIADFLTRIRNANMVYHEKVEVPSSKVKRAIAEILKEEGFIKDYEYIEDGKQGI- 59
Query: 61 LKILLKYYMNRP-VIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKAR 119
L+I LKY N+ VI LKR+S+PGLR+Y KD +P+++ GLG+ IIST GI+TD+KAR
Sbjct: 60 LRIFLKYGPNKERVISGLKRISKPGLRVYAKKDELPRVLGGLGIAIISTPKGIMTDKKAR 119
Query: 120 SMG 122
G
Sbjct: 120 KEG 122
>TIGR_CMR|CBU_0254 [details] [associations]
symbol:CBU_0254 "ribosomal protein L18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_819298.1 ProteinModelPortal:Q83ER0 SMR:Q83ER0
GeneID:1208135 KEGG:cbu:CBU_0254 PATRIC:17929201
BioCyc:CBUR227377:GJ7S-260-MONOMER Uniprot:Q83ER0
Length = 117
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 54/100 (54%), Positives = 75/100 (75%)
Query: 276 GINRLMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQR 334
G RL VHR+ HIYA +IS ++K+L+ ASTLEKEVR +++ GGN AA+ IG+
Sbjct: 22 GAVRLCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVR----SQIKHGGNIQAATAIGKL 77
Query: 335 IAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
IA++A K G+TKVAFDRSG++YHGR++ LA+A R+ G+ F
Sbjct: 78 IAQRAKKAGVTKVAFDRSGYKYHGRVRALAEAVREGGIEF 117
>TIGR_CMR|SO_0247 [details] [associations]
symbol:SO_0247 "ribosomal protein L18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_715887.1 ProteinModelPortal:Q8EK53 SMR:Q8EK53
GeneID:1168130 KEGG:son:SO_0247 PATRIC:23520187 OMA:GRQTRAK
Uniprot:Q8EK53
Length = 116
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 51/99 (51%), Positives = 73/99 (73%)
Query: 276 GINRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRI 335
G+NRL+VHRT HIYA +I+ A+++ +AST+EK V+ L + GN AA +G+ +
Sbjct: 22 GVNRLVVHRTPRHIYAQVINPEAQVVAAASTVEKAVKEQLKST----GNVDAAKAVGKFV 77
Query: 336 AKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
A++A++ G+T VAFDRSGF+YHGR+ LADAAR+ GL F
Sbjct: 78 AERAIEKGVTNVAFDRSGFKYHGRVAALADAAREAGLQF 116
>TIGR_CMR|CBU_0252 [details] [associations]
symbol:CBU_0252 "ribosomal protein S8" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000630 Pfam:PF00410
PROSITE:PS00053 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047 HAMAP:MF_01302_B
HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG ProtClustDB:PRK00136
RefSeq:NP_819296.2 ProteinModelPortal:Q83ER2 SMR:Q83ER2
PRIDE:Q83ER2 GeneID:1208133 KEGG:cbu:CBU_0252 PATRIC:17929197
BioCyc:CBUR227377:GJ7S-258-MONOMER Uniprot:Q83ER2
Length = 130
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 54/121 (44%), Positives = 75/121 (61%)
Query: 3 MSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFELK 62
M DPI+DMLT IRN Q V VLK+EGYI D+ + K +L
Sbjct: 2 MQDPISDMLTRIRNAQAVRKKEVVMPRSKLKMSIANVLKEEGYIVDYRE-EGDLTKAQLV 60
Query: 63 ILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSMG 122
I LKY+ VI ++RVS P L++YK+KD +PK+ NGLG+ IIST+ G+++DR+AR +G
Sbjct: 61 ITLKYHEGESVISEIRRVSSPALQVYKSKDELPKVKNGLGIAIISTSKGVMSDRQARRLG 120
Query: 123 K 123
+
Sbjct: 121 E 121
>TIGR_CMR|CPS_0617 [details] [associations]
symbol:CPS_0617 "ribosomal protein L18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 HAMAP:MF_01337_B RefSeq:YP_267367.1
ProteinModelPortal:Q488Z7 SMR:Q488Z7 STRING:Q488Z7 GeneID:3520558
KEGG:cps:CPS_0617 PATRIC:21464561 OMA:FRFHGRV
BioCyc:CPSY167879:GI48-704-MONOMER Uniprot:Q488Z7
Length = 117
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 52/100 (52%), Positives = 75/100 (75%)
Query: 276 GINRLMVHRTNLHIYANIIS-SNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQR 334
G NRL++ RT HIYA +I+ + ++++ SASTL+KEV + ++ K GN AA+ +G+
Sbjct: 22 GANRLVIFRTPRHIYAQLIAPTGSEVIASASTLDKEV----SAQIEKTGNVAAATAVGKA 77
Query: 335 IAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
IA++A+ GITK+AFDRSGF YHGR+K LA+AAR+ GL F
Sbjct: 78 IAERAVAKGITKIAFDRSGFLYHGRVKALAEAAREAGLQF 117
>TIGR_CMR|GSU_2843 [details] [associations]
symbol:GSU_2843 "ribosomal protein S8" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000630
Pfam:PF00410 PROSITE:PS00053 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047 HAMAP:MF_01302_B
HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG ProtClustDB:PRK00136
RefSeq:NP_953886.1 ProteinModelPortal:Q749A1 SMR:Q749A1
GeneID:2686821 KEGG:gsu:GSU2843 PATRIC:22028533
BioCyc:GSUL243231:GH27-2809-MONOMER Uniprot:Q749A1
Length = 132
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 53/123 (43%), Positives = 73/123 (59%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
MSM+DPIADMLT IRN + VLK EG+IK++ +I +
Sbjct: 1 MSMTDPIADMLTRIRNANMARLQKVDIPSSNLKVNLANVLKAEGFIKNYKVIADSRQGV- 59
Query: 61 LKILLKYYMNR-PVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKAR 119
L++ LKY + PVI +KRVS+PG R+Y D IP + NG+G+ I+ST+ G+ITD+ AR
Sbjct: 60 LRVYLKYIDEKDPVINEIKRVSKPGSRVYVGSDKIPSVKNGMGVAILSTSKGLITDKSAR 119
Query: 120 SMG 122
G
Sbjct: 120 EAG 122
>TIGR_CMR|BA_0124 [details] [associations]
symbol:BA_0124 "ribosomal protein S8" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0096
PANTHER:PTHR11758 SUPFAM:SSF56047 HAMAP:MF_01302_B
HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG ProtClustDB:PRK00136
RefSeq:NP_842692.1 RefSeq:YP_016729.1 RefSeq:YP_026410.1
ProteinModelPortal:Q81VR6 SMR:Q81VR6 DNASU:1087012
EnsemblBacteria:EBBACT00000009737 EnsemblBacteria:EBBACT00000017653
EnsemblBacteria:EBBACT00000021767 GeneID:1087012 GeneID:2819216
GeneID:2850382 KEGG:ban:BA_0124 KEGG:bar:GBAA_0124 KEGG:bat:BAS0124
BioCyc:BANT260799:GJAJ-135-MONOMER
BioCyc:BANT261594:GJ7F-137-MONOMER Uniprot:Q81VR6
Length = 132
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 52/122 (42%), Positives = 74/122 (60%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
M M+DPIADMLT IRN +V +LK EG+I+D I+ K
Sbjct: 1 MVMTDPIADMLTRIRNANMVRHEKLEVPASKIKKEIAELLKREGFIRDVEYIEDNKQGI- 59
Query: 61 LKILLKYYMNRP-VIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKAR 119
L+I LKY N VI LKR+S+PGLR+Y D +P+++NGLG+ ++ST+ G++TD+ AR
Sbjct: 60 LRIFLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGIALVSTSKGVMTDKDAR 119
Query: 120 SM 121
+
Sbjct: 120 QL 121
>SGD|S000001190 [details] [associations]
symbol:MRPL6 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA;IPI]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0032543 "mitochondrial
translation" evidence=IC] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=IDA;IPI] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
SGD:S000001190 EMBL:BK006934 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 GO:GO:0019843 EMBL:U10397 EMBL:X69480 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039904 OrthoDB:EOG4RZ28K PIR:S46764
RefSeq:NP_012017.1 ProteinModelPortal:P32904 SMR:P32904
DIP:DIP-5622N IntAct:P32904 MINT:MINT-503396 STRING:P32904
PaxDb:P32904 EnsemblFungi:YHR147C GeneID:856552 KEGG:sce:YHR147C
CYGD:YHR147c OMA:MWGTVRS NextBio:982360 Genevestigator:P32904
GermOnline:YHR147C Uniprot:P32904
Length = 214
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 59/159 (37%), Positives = 97/159 (61%)
Query: 124 MPIFIPPNVEVTLN-SNKITLKGPLGILKQNKNNLVNI-KNDSNVLYFTAINNS--RIAK 179
MP I ++N S IT+KGP G L + +++ K++ + + NS + +
Sbjct: 39 MPRIIRKG-RTSMNISQNITVKGPKGELSVEVPDFLHLDKDEKHGKINVTVQNSEDKHQR 97
Query: 180 SMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKN--YLNLILGFSHPILYKIPFD 237
SM GT+RS+INN IIGVT+G L+ +G G+RA++E + ++N+ +G S +P
Sbjct: 98 SMWGTVRSLINNHIIGVTEGHLAVLRFVGTGYRAQLENDGKFVNVKVGASIKQGLDVPEG 157
Query: 238 IICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
I+ +TP+ T ++I+G NKQ V AA++R+++ PEPYKG
Sbjct: 158 IVVKTPAPTSLIIEGCNKQQVLLFAAKLRKFHPPEPYKG 196
>UNIPROTKB|Q0BYC8 [details] [associations]
symbol:rpsH "30S ribosomal protein S8" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053
GO:GO:0006412 GO:GO:0003735 GO:GO:0019843 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0022627 eggNOG:COG0096
PANTHER:PTHR11758 SUPFAM:SSF56047 HAMAP:MF_01302_B
HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG ProtClustDB:PRK00136
RefSeq:YP_761515.1 ProteinModelPortal:Q0BYC8 STRING:Q0BYC8
GeneID:4290290 KEGG:hne:HNE_2837 PATRIC:32218547
BioCyc:HNEP228405:GI69-2844-MONOMER Uniprot:Q0BYC8
Length = 131
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 51/120 (42%), Positives = 74/120 (61%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
M++SDP+ DMLT IRN Q+ VL DEGYI+ + I+ +K
Sbjct: 1 MNISDPLGDMLTRIRNAQMRGMSKTTSPASKLRARVLDVLTDEGYIRGYAEIEKSGHK-T 59
Query: 61 LKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
L+I LKYY +PVI +KRVS+PG R+Y + +IP + NGLG+ I+ST+ G+++D AR+
Sbjct: 60 LEIELKYYEGQPVISEIKRVSKPGRRVYSSVSDIPLVRNGLGISILSTSQGVMSDNAARA 119
>UNIPROTKB|P0C018 [details] [associations]
symbol:rplR "50S ribosomal subunit protein L18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:X01563
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W
PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF
PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:A02803 RefSeq:NP_417763.1
RefSeq:YP_492128.1 ProteinModelPortal:P0C018 SMR:P0C018
DIP:DIP-47908N IntAct:P0C018 MINT:MINT-1293631 PaxDb:P0C018
PRIDE:P0C018 EnsemblBacteria:EBESCT00000004130
EnsemblBacteria:EBESCT00000018241 GeneID:12934402 GeneID:947804
KEGG:ecj:Y75_p3872 KEGG:eco:b3304 PATRIC:32122040 EchoBASE:EB0872
EcoGene:EG10879 BioCyc:EcoCyc:EG10879-MONOMER
BioCyc:ECOL316407:JW3266-MONOMER EvolutionaryTrace:P0C018
Genevestigator:P0C018 Uniprot:P0C018
Length = 117
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 50/100 (50%), Positives = 73/100 (73%)
Query: 276 GINRLMVHRTNLHIYANIISSN-AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQR 334
G RL+VHRT HIYA +I+ N +++L++AST+EK + +L GN AA+ +G+
Sbjct: 22 GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIA----EQLKYTGNKDAAAAVGKA 77
Query: 335 IAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
+A++AL+ GI V+FDRSGF+YHGR++ LADAAR+ GL F
Sbjct: 78 VAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
>UNIPROTKB|Q9KP00 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:F82057 RefSeq:NP_232208.1
ProteinModelPortal:Q9KP00 SMR:Q9KP00 PRIDE:Q9KP00 DNASU:2615597
GeneID:2615597 KEGG:vch:VC2580 PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 238 (88.8 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 48/100 (48%), Positives = 73/100 (73%)
Query: 276 GINRLMVHRTNLHIYANIISSN-AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQR 334
G RL+VHRT H+YA +I++N ++++ +AST+EK +R ++ GN AA +G+
Sbjct: 22 GATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIR----EQVKYTGNIDAAKAVGKA 77
Query: 335 IAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
+A++AL+ G+T VAFDRSGF+YHGR+ LAD+AR+ GL F
Sbjct: 78 VAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLKF 117
>TIGR_CMR|VC_2580 [details] [associations]
symbol:VC_2580 "ribosomal protein L18" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:F82057
RefSeq:NP_232208.1 ProteinModelPortal:Q9KP00 SMR:Q9KP00
PRIDE:Q9KP00 DNASU:2615597 GeneID:2615597 KEGG:vch:VC2580
PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 238 (88.8 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 48/100 (48%), Positives = 73/100 (73%)
Query: 276 GINRLMVHRTNLHIYANIISSN-AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQR 334
G RL+VHRT H+YA +I++N ++++ +AST+EK +R ++ GN AA +G+
Sbjct: 22 GATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIR----EQVKYTGNIDAAKAVGKA 77
Query: 335 IAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
+A++AL+ G+T VAFDRSGF+YHGR+ LAD+AR+ GL F
Sbjct: 78 VAERALEKGVTVVAFDRSGFQYHGRVAALADSAREAGLKF 117
>ASPGD|ASPL0000044544 [details] [associations]
symbol:AN1770 species:162425 "Emericella nidulans"
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 EMBL:BN001307 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AACD01000028 eggNOG:COG0097 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 HOGENOM:HOG000039904
OrthoDB:EOG4RZ28K OMA:MWGTVRS RefSeq:XP_659374.1
ProteinModelPortal:Q5BCG0 STRING:Q5BCG0
EnsemblFungi:CADANIAT00008416 GeneID:2875587 KEGG:ani:AN1770.2
Uniprot:Q5BCG0
Length = 251
Score = 232 (86.7 bits), Expect = 2.4e-19, P = 2.4e-19
Identities = 58/151 (38%), Positives = 86/151 (56%)
Query: 141 ITLKGPLGILKQNKNNLVNIKNDSNVLYFT-AINNSRIA--KSMSGTMRSIINNMIIGVT 197
+ + GPLG L N + VNI +D N+ + + + + ++M GT R+ + N I+GV+
Sbjct: 83 VEVNGPLGQLTLNIPSFVNIAHDENLRKASLTVADPAVPHQRAMWGTTRAHLQNYILGVS 142
Query: 198 KGFEKKLQLIGVGFRAKIE------------KNYLNLILGFSHPILYKIPFDIICETPSQ 245
+G L L+GVG+RA IE + +++L G+SHPI IP + TP
Sbjct: 143 EGHICILSLVGVGYRASIEPTATTVEPEYPGQQFVSLKAGYSHPIELGIPEGVQASTPQP 202
Query: 246 TEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
T IL++G +KQ V AAEIR + KPEPYKG
Sbjct: 203 TRILLQGSDKQVVTQFAAEIREWRKPEPYKG 233
>UNIPROTKB|P66625 [details] [associations]
symbol:rpsH "30S ribosomal protein S8" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 GO:GO:0005840 EMBL:BX842574 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047
HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG
ProtClustDB:PRK00136 PIR:A70644 RefSeq:NP_215232.1
RefSeq:NP_335163.1 RefSeq:YP_006514062.1 ProteinModelPortal:P66625
SMR:P66625 PRIDE:P66625 EnsemblBacteria:EBMYCT00000003720
EnsemblBacteria:EBMYCT00000070309 GeneID:13318607 GeneID:888424
GeneID:926036 KEGG:mtc:MT0743 KEGG:mtu:Rv0718 KEGG:mtv:RVBD_0718
PATRIC:18123369 TubercuList:Rv0718 Uniprot:P66625
Length = 132
Score = 227 (85.0 bits), Expect = 9.6e-19, P = 9.6e-19
Identities = 52/123 (42%), Positives = 70/123 (56%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFE 60
M+M+DPIAD LT +RN +LK+EGYI DF K
Sbjct: 1 MTMTDPIADFLTRLRNANSAYHDEVSLPHSKLKANIAQILKNEGYISDFRTEDARVGK-S 59
Query: 61 LKILLKYYMNRP-VIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKAR 119
L I LKY +R I L+RVS+PGLR+Y N+P+++ GLG+ IIST+SG++TDR+A
Sbjct: 60 LVIQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAA 119
Query: 120 SMG 122
G
Sbjct: 120 RQG 122
>TIGR_CMR|ECH_0423 [details] [associations]
symbol:ECH_0423 "ribosomal protein S8" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047
HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG
ProtClustDB:PRK00136 RefSeq:YP_507241.1 ProteinModelPortal:Q2GH42
STRING:Q2GH42 GeneID:3927750 KEGG:ech:ECH_0423 PATRIC:20576323
BioCyc:ECHA205920:GJNR-424-MONOMER Uniprot:Q2GH42
Length = 132
Score = 223 (83.6 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 53/123 (43%), Positives = 68/123 (55%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKN-KF 59
MS+SDPIA+ LT IRNGQ+ +L EGYI F N KF
Sbjct: 1 MSLSDPIANFLTSIRNGQLSMNKVIVVSYSYVIHAILQILLSEGYIDGFTEKSKGSNIKF 60
Query: 60 ELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKAR 119
++ LKYY PVI + R+S+PG R Y + ++PK NGLGL IIST+ GI++D AR
Sbjct: 61 -FEVKLKYYNGAPVISQIARISKPGKRCYCSAKDMPKFYNGLGLYIISTSKGIMSDYNAR 119
Query: 120 SMG 122
G
Sbjct: 120 KSG 122
>TIGR_CMR|SPO_0499 [details] [associations]
symbol:SPO_0499 "ribosomal protein S8" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000630
Pfam:PF00410 PROSITE:PS00053 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047
HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG
ProtClustDB:PRK00136 RefSeq:YP_165761.1 ProteinModelPortal:Q5LW44
GeneID:3195046 KEGG:sil:SPO0499 PATRIC:23374259 Uniprot:Q5LW44
Length = 130
Score = 223 (83.6 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 50/118 (42%), Positives = 63/118 (53%)
Query: 3 MSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFELK 62
M+DPI DMLT IRN Q+ VL DEGYI+ + L
Sbjct: 1 MNDPIGDMLTRIRNAQLRGKSTVSTPGSKLRAWVLDVLADEGYIRGYEKSTDVNGHPTLN 60
Query: 63 ILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
I LKYY PVI LKRVS+PG R+Y +IP + GLG+ I+ST G+++D ARS
Sbjct: 61 IELKYYEGEPVIRELKRVSKPGRRVYMGVKDIPSVRQGLGVSIVSTPKGVMSDANARS 118
>TIGR_CMR|CHY_2293 [details] [associations]
symbol:CHY_2293 "ribosomal protein L18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_361102.1 ProteinModelPortal:Q3A9T2
SMR:Q3A9T2 STRING:Q3A9T2 GeneID:3727753 KEGG:chy:CHY_2293
PATRIC:21277657 BioCyc:CHYD246194:GJCN-2292-MONOMER Uniprot:Q3A9T2
Length = 122
Score = 221 (82.9 bits), Expect = 4.8e-18, P = 4.8e-18
Identities = 49/97 (50%), Positives = 66/97 (68%)
Query: 279 RLMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V+R+ HIYA II + + L++ASTL+ E+R K+G GGN AA +G+ IA+
Sbjct: 30 RLNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELR----GKIGYGGNIEAAKAVGRLIAE 85
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
+A GI KV FDR G+ YHGR+K LA+AAR+ GL F
Sbjct: 86 RAKAKGIEKVVFDRGGYLYHGRVKALAEAAREGGLQF 122
>TIGR_CMR|APH_0294 [details] [associations]
symbol:APH_0294 "ribosomal protein S8" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000630
Pfam:PF00410 PROSITE:PS00053 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047 HAMAP:MF_01302_B
HOGENOM:HOG000204095 KO:K02994 RefSeq:YP_504906.1
ProteinModelPortal:Q2GL45 STRING:Q2GL45 GeneID:3930374
KEGG:aph:APH_0294 PATRIC:20949162 OMA:QRVSKPG ProtClustDB:PRK00136
BioCyc:APHA212042:GHPM-324-MONOMER Uniprot:Q2GL45
Length = 133
Score = 214 (80.4 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 48/123 (39%), Positives = 68/123 (55%)
Query: 1 MSMSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFI-IKCFKNKF 59
MS+SDPIAD LT +RNGQ +L +EGYI+ F ++
Sbjct: 1 MSLSDPIADFLTRLRNGQAGMNKVVYVPCSKVVMAVLRILVEEGYIESFTEEVRGDSGIK 60
Query: 60 ELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKAR 119
LK+ LKY+ + I + RVSRPG R+Y + D +P+ N LG+ I+ST+ GI+ D AR
Sbjct: 61 VLKVFLKYFNSAAAIRKIVRVSRPGKRVYSSADKMPRFYNALGIYIVSTSKGIMLDSHAR 120
Query: 120 SMG 122
+ G
Sbjct: 121 NAG 123
>TIGR_CMR|GSU_2841 [details] [associations]
symbol:GSU_2841 "ribosomal protein L18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_953884.2 ProteinModelPortal:Q749A3 SMR:Q749A3
GeneID:2686815 KEGG:gsu:GSU2841 PATRIC:22028529
BioCyc:GSUL243231:GH27-2807-MONOMER Uniprot:Q749A3
Length = 122
Score = 211 (79.3 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 50/97 (51%), Positives = 63/97 (64%)
Query: 279 RLMVHRTNLHIYANIIS-SNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V ++ HIYA II + L+SAST++KE +LN GN AA +G IAK
Sbjct: 30 RLNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLN----HCGNVEAAKRVGALIAK 85
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
+AL+ I V FDR+GF YHGRIK LAD+AR+NGL F
Sbjct: 86 RALEKNIATVVFDRNGFLYHGRIKALADSARENGLTF 122
>TIGR_CMR|BA_0126 [details] [associations]
symbol:BA_0126 "ribosomal protein L18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060
ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:NP_842694.1
RefSeq:YP_016731.1 RefSeq:YP_026412.1 ProteinModelPortal:Q81VR4
SMR:Q81VR4 DNASU:1087013 EnsemblBacteria:EBBACT00000013313
EnsemblBacteria:EBBACT00000016218 EnsemblBacteria:EBBACT00000019264
GeneID:1087013 GeneID:2818212 GeneID:2851571 KEGG:ban:BA_0126
KEGG:bar:GBAA_0126 KEGG:bat:BAS0126
BioCyc:BANT260799:GJAJ-137-MONOMER
BioCyc:BANT261594:GJ7F-139-MONOMER Uniprot:Q81VR4
Length = 120
Score = 209 (78.6 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 48/97 (49%), Positives = 66/97 (68%)
Query: 279 RLMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V R+N HIYA +I N L+SASTL+K+ L LN G N AA+ +G+ +AK
Sbjct: 30 RLNVFRSNQHIYAQVIDDVNGVTLVSASTLDKD--LALN---GTS-NIEAATKVGESVAK 83
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
+A++ G+ +V FDR G+ YHGR+K LA+AAR+ GL F
Sbjct: 84 RAVEKGVKEVVFDRGGYLYHGRVKALAEAAREAGLQF 120
>TIGR_CMR|DET_0488 [details] [associations]
symbol:DET_0488 "ribosomal protein S8" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758 SUPFAM:SSF56047
HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994 OMA:QRVSKPG
ProtClustDB:PRK00136 RefSeq:YP_181232.1 ProteinModelPortal:Q3Z967
STRING:Q3Z967 GeneID:3230242 KEGG:det:DET0488 PATRIC:21608045
BioCyc:DETH243164:GJNF-488-MONOMER Uniprot:Q3Z967
Length = 131
Score = 209 (78.6 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 46/121 (38%), Positives = 69/121 (57%)
Query: 3 MSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFELK 62
+SDPIADMLT IRNG + V+K EG+I + +I K K +LK
Sbjct: 2 ISDPIADMLTRIRNGVMAKHEVVIMPASRMKQYLAKVMKQEGFIAGYEVIGA-KPKRQLK 60
Query: 63 ILLKYYMN-RPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSM 121
I+L+Y + L+R+S+PGLR+Y + IP++ GLG+ I+ST+ G++T +A
Sbjct: 61 IVLRYDEGGASFVSGLERISKPGLRVYVQRGEIPRVYGGLGIAIVSTSKGVMTGSQAWRQ 120
Query: 122 G 122
G
Sbjct: 121 G 121
>CGD|CAL0005711 [details] [associations]
symbol:MRPL6 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347 PRINTS:PR00059
PROSITE:PS00525 CGD:CAL0005711 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:AACQ01000039 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
RefSeq:XP_718643.1 ProteinModelPortal:Q5AAK3 STRING:Q5AAK3
GeneID:3639724 KEGG:cal:CaO19.7486 Uniprot:Q5AAK3
Length = 233
Score = 203 (76.5 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 55/162 (33%), Positives = 86/162 (53%)
Query: 127 FIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNI------KNDSNVLYFTAINNSRIAKS 180
F N L+ IT GPLG L+ +NI +ND +++ ++I +S
Sbjct: 55 FTKRNKTFILDRQIIT-SGPLGKLRVEIPEFINISENNTNENDKSIIVSVKKPENKIQRS 113
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKN------YLNLILGFSHPILYKI 234
+ GT RSI+ N IIG+T+G ++ +G G+RA +EK+ ++L +G KI
Sbjct: 114 LWGTYRSILYNNIIGITEGHLSIVKFVGTGYRAILEKDPQTGEDIISLKIGLPFTPKLKI 173
Query: 235 PFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
P + +P+ ++I+G +KQ V AA IR + KPEPYKG
Sbjct: 174 PKGLKVSSPNPARLVIEGSDKQQVKLFAAFIREHKKPEPYKG 215
>TIGR_CMR|APH_0295 [details] [associations]
symbol:APH_0295 "ribosomal protein L6" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000702
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6
RefSeq:YP_504907.1 ProteinModelPortal:Q2GL44 STRING:Q2GL44
GeneID:3929992 KEGG:aph:APH_0295 PATRIC:20949164
BioCyc:APHA212042:GHPM-325-MONOMER Uniprot:Q2GL44
Length = 180
Score = 196 (74.1 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 56/161 (34%), Positives = 86/161 (53%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQ-NKNNLVNIKNDSNVLYFTAIN-NSRIA 178
+G MPI IP V+V+++ + +T+ G + ++ + D +L N +S A
Sbjct: 4 VGAMPIEIPEGVQVSVDESGVTVSDAKGRTSTFSLSHGIKAVLDGKMLMLVNENKHSTKA 63
Query: 179 KSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDI 238
K M G+ RS INN I G+ GF + ++ GVG++ + L++ LGFSH + Y IP I
Sbjct: 64 KVMWGSYRSNINNAIRGMASGFLVEFEVNGVGYKVVHQGECLSISLGFSHSVKYVIPEGI 123
Query: 239 ICETPSQTEILIKGINKQAVGHVAAE---IRRYYKPEPYKG 276
+ T+ I G +K V VAA+ IRRY +PYKG
Sbjct: 124 EVKCTKPTQFTISGSDKIKVHMVAADLCSIRRY---DPYKG 161
>TIGR_CMR|NSE_0280 [details] [associations]
symbol:NSE_0280 "ribosomal protein S8" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0096 PANTHER:PTHR11758
SUPFAM:SSF56047 HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994
OMA:QRVSKPG ProtClustDB:PRK00136 RefSeq:YP_506171.1
ProteinModelPortal:Q2GEC5 STRING:Q2GEC5 GeneID:3931382
KEGG:nse:NSE_0280 PATRIC:22680653
BioCyc:NSEN222891:GHFU-307-MONOMER Uniprot:Q2GEC5
Length = 131
Score = 195 (73.7 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 45/114 (39%), Positives = 60/114 (52%)
Query: 7 IADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFELKILLK 66
IAD + IRNGQ+ +LK+EGYI + +I+ + + I LK
Sbjct: 6 IADAVARIRNGQMARLREVTIYHSRVLVEIAALLKEEGYIVGYEVIEIRPSVKRIIIRLK 65
Query: 67 YYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
YY +PVI LK SRPG RIY IPK GLG+ ++ST+ GI+ KA S
Sbjct: 66 YYCGQPVISKLKLFSRPGKRIYSRACEIPKFYGGLGISVLSTSKGILPSYKAVS 119
>TIGR_CMR|DET_0490 [details] [associations]
symbol:DET_0490 "ribosomal protein L18" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_181234.1 ProteinModelPortal:Q3Z965
STRING:Q3Z965 GeneID:3230240 KEGG:det:DET0490 PATRIC:21608049
BioCyc:DETH243164:GJNF-490-MONOMER Uniprot:Q3Z965
Length = 121
Score = 193 (73.0 bits), Expect = 7.4e-15, P = 7.4e-15
Identities = 43/97 (44%), Positives = 62/97 (63%)
Query: 279 RLMVHRTNLHIYANIISSNA-KILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V R+ +IY +I+ N L+ AST + E++ L+ K T A +IG IAK
Sbjct: 29 RLCVFRSIENIYTQVINDNCGSTLVQASTKDAELKAELDGKT----KTEQAVVIGNLIAK 84
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
++L+ GI++V FDR G++YHGR+K LA+AAR GL F
Sbjct: 85 RSLEAGISEVVFDRGGYKYHGRVKALAEAARSGGLKF 121
>TIGR_CMR|CJE_1861 [details] [associations]
symbol:CJE_1861 "ribosomal protein S8" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758
SUPFAM:SSF56047 HAMAP:MF_01302_B HOGENOM:HOG000204095 KO:K02994
OMA:QRVSKPG ProtClustDB:PRK00136 RefSeq:YP_179831.1
ProteinModelPortal:Q5HSA4 STRING:Q5HSA4 GeneID:3232488
KEGG:cjr:CJE1861 PATRIC:20045554
BioCyc:CJEJ195099:GJC0-1900-MONOMER Uniprot:Q5HSA4
Length = 131
Score = 188 (71.2 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 41/121 (33%), Positives = 67/121 (55%)
Query: 3 MSDPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKDFFIIKCFKNKFELK 62
++D I+D LT IRN + + + +GYI+ F +I+ K KF +
Sbjct: 2 INDIISDSLTRIRNAGMRKLETTKLLHSKVIEALVGIFQAKGYIESFNVIEEDKKKF-IN 60
Query: 63 ILLKY-YMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSM 121
++LKY + VI LKR+S+PG R+YK KD I + NG G +++ST+ G++ + +A
Sbjct: 61 VVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGTIVVSTSHGVLANDEAYKA 120
Query: 122 G 122
G
Sbjct: 121 G 121
>TAIR|locus:2007690 [details] [associations]
symbol:EMB3105 "EMBRYO DEFECTIVE 3105" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0007389 "pattern
specification process" evidence=RCA] [GO:0008361 "regulation of
cell size" evidence=RCA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0009832 "plant-type cell wall
biogenesis" evidence=RCA] [GO:0009926 "auxin polar transport"
evidence=RCA] [GO:0010015 "root morphogenesis" evidence=RCA]
[GO:0010075 "regulation of meristem growth" evidence=RCA]
[GO:0040007 "growth" evidence=RCA] [GO:0048653 "anther development"
evidence=RCA] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:AC007932 EMBL:AF336922 IPI:IPI00547186 PIR:E96523
RefSeq:NP_175268.1 UniGene:At.15427 UniGene:At.67857
ProteinModelPortal:Q9SX68 SMR:Q9SX68 STRING:Q9SX68 PaxDb:Q9SX68
PRIDE:Q9SX68 ProMEX:Q9SX68 EnsemblPlants:AT1G48350.1 GeneID:841255
KEGG:ath:AT1G48350 GeneFarm:175 TAIR:At1g48350 eggNOG:COG0256
HOGENOM:HOG000248742 InParanoid:Q9SX68 KO:K02881 OMA:GNKYHGR
PhylomeDB:Q9SX68 ProtClustDB:CLSN2682213 Genevestigator:Q9SX68
GermOnline:AT1G48350 TIGRFAMs:TIGR00060 Uniprot:Q9SX68
Length = 170
Score = 185 (70.2 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 44/97 (45%), Positives = 58/97 (59%)
Query: 279 RLMVHRTNLHIYANIIS-SNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V R+N H+Y +I + L SAST +K + + G A +G+ IAK
Sbjct: 76 RLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYT--SGPTIEVAKKVGEVIAK 133
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
L+ GITKVAFDR G+ YHGRI+ LA AAR++GL F
Sbjct: 134 SCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170
>UNIPROTKB|P66076 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 GO:GO:0005840 EMBL:BX842574 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:C70644 RefSeq:NP_215234.1 RefSeq:NP_335165.1
RefSeq:YP_006514064.1 ProteinModelPortal:P66076 SMR:P66076
PRIDE:P66076 EnsemblBacteria:EBMYCT00000002810
EnsemblBacteria:EBMYCT00000070227 GeneID:13318609 GeneID:888457
GeneID:926038 KEGG:mtc:MT0745 KEGG:mtu:Rv0720 KEGG:mtv:RVBD_0720
PATRIC:18123373 TubercuList:Rv0720 Uniprot:P66076
Length = 122
Score = 179 (68.1 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 43/98 (43%), Positives = 62/98 (63%)
Query: 279 RLMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASI-IGQRIA 336
RL+VHR+ HI+ +++ N + +AS++E +VR G G+ A S+ +GQ IA
Sbjct: 32 RLVVHRSARHIHVQLVNDLNGTTVAAASSIEADVR-------GVPGDKKARSVRVGQLIA 84
Query: 337 KKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
++A GI V FDR G+ Y GRI LADAAR+NGL+F
Sbjct: 85 ERAKAAGIDTVVFDRGGYTYGGRIAALADAARENGLSF 122
>TIGR_CMR|SPO_0501 [details] [associations]
symbol:SPO_0501 "ribosomal protein L18" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
OMA:FRFHGRV RefSeq:YP_165763.1 ProteinModelPortal:Q5LW42
GeneID:3196026 KEGG:sil:SPO0501 PATRIC:23374263 Uniprot:Q5LW42
Length = 119
Score = 177 (67.4 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 279 RLMVHRTNLHIYANIISSNAKI-LISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL VHR+N +I A +I + L +AST+EK++ + +GK N AA +G IA+
Sbjct: 29 RLSVHRSNKNISAQLIDDVRGVTLAAASTMEKDLGV-----VGKN-NVEAAKKVGAAIAE 82
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGL 372
+A K G+ + FDR GF +HG++K LADAAR+ GL
Sbjct: 83 RAKKAGVEEAYFDRGGFLFHGKVKALADAAREGGL 117
>UNIPROTKB|P0C492 [details] [associations]
symbol:rps8 "30S ribosomal protein S8, chloroplastic"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 GO:GO:0009507
GO:GO:0009536 GO:GO:0016020 GO:GO:0006412 GO:GO:0005840
EMBL:AY522331 GO:GO:0003735 GO:GO:0019843 PANTHER:PTHR11758
SUPFAM:SSF56047 ProtClustDB:CHL00042 HAMAP:MF_01302_B
RefSeq:NP_039421.1 ProteinModelPortal:P0C492 SMR:P0C492
PRIDE:P0C492 GeneID:3131446 KEGG:osa:3131446 Gramene:P0C492
HOGENOM:HOG000204095 KO:K02994 Genevestigator:P0C492 Uniprot:P0C492
Length = 136
Score = 176 (67.0 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 44/124 (35%), Positives = 65/124 (52%)
Query: 5 DPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKD---------FFIIKCF 55
D IAD+LT IRN + +L EG+I+ +F++
Sbjct: 4 DTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTL 63
Query: 56 KNKFELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITD 115
+++ + K Y R LKR+SRPGLRIY N IPK++ G+G+ I+ST+ GI+TD
Sbjct: 64 RHQ-KRKTRKGIYRTRTF---LKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTD 119
Query: 116 RKAR 119
R+AR
Sbjct: 120 REAR 123
>UNIPROTKB|P0C493 [details] [associations]
symbol:rps8 "30S ribosomal protein S8, chloroplastic"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053
GO:GO:0009507 GO:GO:0009536 GO:GO:0016020 GO:GO:0006412
GO:GO:0005840 EMBL:AY522329 GO:GO:0003735 GO:GO:0019843
PANTHER:PTHR11758 SUPFAM:SSF56047 ProtClustDB:CHL00042
HAMAP:MF_01302_B RefSeq:YP_654239.1 ProteinModelPortal:P0C493
SMR:P0C493 PRIDE:P0C493 GeneID:4126929 Gramene:P0C493
Uniprot:P0C493
Length = 136
Score = 176 (67.0 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 44/124 (35%), Positives = 65/124 (52%)
Query: 5 DPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKD---------FFIIKCF 55
D IAD+LT IRN + +L EG+I+ +F++
Sbjct: 4 DTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTL 63
Query: 56 KNKFELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITD 115
+++ + K Y R LKR+SRPGLRIY N IPK++ G+G+ I+ST+ GI+TD
Sbjct: 64 RHQ-KRKTRKGIYRTRTF---LKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTD 119
Query: 116 RKAR 119
R+AR
Sbjct: 120 REAR 123
>UNIPROTKB|P0C494 [details] [associations]
symbol:rps8 "30S ribosomal protein S8, chloroplastic"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053
GO:GO:0009507 GO:GO:0009536 GO:GO:0016020 GO:GO:0006412
GO:GO:0005840 EMBL:X15901 EMBL:AY522330 GenomeReviews:AY522330_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0096 PANTHER:PTHR11758
SUPFAM:SSF56047 EMBL:AP005161 ProtClustDB:CHL00042 HAMAP:MF_01302_B
RefSeq:NP_039421.1 GeneID:3131446 KEGG:osa:3131446 KO:K02994
PIR:JQ0262 ProteinModelPortal:P0C494 SMR:P0C494 STRING:P0C494
EnsemblPlants:LOC_Os04g16832.1 EnsemblPlants:LOC_Os05g22718.1
EnsemblPlants:LOC_Os08g15278.1 EnsemblPlants:LOC_Osp1g00700.1
Gramene:P0C494 OMA:PRILGGI Uniprot:P0C494
Length = 136
Score = 176 (67.0 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 44/124 (35%), Positives = 65/124 (52%)
Query: 5 DPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKD---------FFIIKCF 55
D IAD+LT IRN + +L EG+I+ +F++
Sbjct: 4 DTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTL 63
Query: 56 KNKFELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITD 115
+++ + K Y R LKR+SRPGLRIY N IPK++ G+G+ I+ST+ GI+TD
Sbjct: 64 RHQ-KRKTRKGIYRTRTF---LKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTD 119
Query: 116 RKAR 119
R+AR
Sbjct: 120 REAR 123
>UNIPROTKB|Q6END8 [details] [associations]
symbol:rps8 "30S ribosomal protein S8, chloroplastic"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000630 Pfam:PF00410 PROSITE:PS00053 GO:GO:0009507
GO:GO:0009536 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AP006728 PANTHER:PTHR11758 SUPFAM:SSF56047
RefSeq:YP_052785.1 ProteinModelPortal:Q6END8 SMR:Q6END8
GeneID:2885895 Gramene:Q6END8 ProtClustDB:CHL00042 HAMAP:MF_01302_B
Uniprot:Q6END8
Length = 136
Score = 176 (67.0 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 44/124 (35%), Positives = 65/124 (52%)
Query: 5 DPIADMLTYIRNGQIVNXXXXXXXXXXXXXXXXXVLKDEGYIKD---------FFIIKCF 55
D IAD+LT IRN + +L EG+I+ +F++
Sbjct: 4 DTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTL 63
Query: 56 KNKFELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITD 115
+++ + K Y R LKR+SRPGLRIY N IPK++ G+G+ I+ST+ GI+TD
Sbjct: 64 RHQ-KRKTRKGIYRTRTF---LKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTD 119
Query: 116 RKAR 119
R+AR
Sbjct: 120 REAR 123
>TIGR_CMR|NSE_0281 [details] [associations]
symbol:NSE_0281 "ribosomal protein L6" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6 RefSeq:YP_506172.1
ProteinModelPortal:Q2GEC4 STRING:Q2GEC4 GeneID:3931705
KEGG:nse:NSE_0281 PATRIC:22680655 OMA:CEVSAGR
BioCyc:NSEN222891:GHFU-308-MONOMER Uniprot:Q2GEC4
Length = 176
Score = 170 (64.9 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 36/95 (37%), Positives = 61/95 (64%)
Query: 183 GTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICET 242
G RS++NN+ G+ K F+++L L GVG++A++ YL L LG++H I Y I FD + T
Sbjct: 65 GLHRSLLNNIACGLRKKFQRRLVLNGVGYKAEVRGRYLILYLGYTHNIKYFI-FDAVSIT 123
Query: 243 PSQ-TEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
+ TE+L++ +K +G V +++ + +PYKG
Sbjct: 124 AVKPTELLVESSDKHVLGLVVSDLCSLRRYDPYKG 158
>POMBASE|SPCC613.06 [details] [associations]
symbol:rpl902 "60S ribosomal protein L9" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISO] InterPro:IPR000702 InterPro:IPR002359
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
PomBase:SPCC613.06 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0002181 GO:GO:0019843
GO:GO:0022625 KO:K02940 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 HOGENOM:HOG000039905 OMA:RDTRIFQ OrthoDB:EOG4RJK9X
PIR:T41472 RefSeq:NP_587694.1 ProteinModelPortal:O74905
STRING:O74905 PRIDE:O74905 EnsemblFungi:SPCC613.06.1 GeneID:2539464
KEGG:spo:SPCC613.06 NextBio:20800626 Uniprot:O74905
Length = 189
Score = 168 (64.2 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 49/150 (32%), Positives = 75/150 (50%)
Query: 128 IPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNIKNDSNVLYFTAINNSRIAKSMSGTMR 186
IP V V + + +T+KGP G+LKQN + + +K N + F + SR + T
Sbjct: 13 IPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGNTIKFIVWHGSRKHNACIRTAY 72
Query: 187 SIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQT 246
SIINNMIIGVT+GF K++L+ F I ++ + + +I I C P T
Sbjct: 73 SIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKC-LPGVT 131
Query: 247 ---------EILIKGINKQAVGHVAAEIRR 267
EI+I+G + + V AA I++
Sbjct: 132 VSISSAVKDEIIIEGNSLENVSQSAANIKQ 161
>POMBASE|SPAC4G9.16c [details] [associations]
symbol:rpl901 "60S ribosomal protein L9" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006412 "translation" evidence=ISO]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] InterPro:IPR000702
InterPro:IPR002359 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PROSITE:PS00700 PomBase:SPAC4G9.16c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0019843 GO:GO:0022625 KO:K02940 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 OMA:AVRTVCS PIR:T38875 RefSeq:NP_593698.1
ProteinModelPortal:Q10232 STRING:Q10232 PRIDE:Q10232
EnsemblFungi:SPAC4G9.16c.1 GeneID:2543380 KEGG:spo:SPAC4G9.16c
OrthoDB:EOG4RJK9X NextBio:20804395 Uniprot:Q10232
Length = 190
Score = 155 (59.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 46/150 (30%), Positives = 75/150 (50%)
Query: 128 IPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNIKNDSNVLYFTAINNSRIAKSMSGTMR 186
IP V V + + +T+ GP G LKQN ++ + +K N + F + SR + ++
Sbjct: 13 IPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVY 72
Query: 187 SIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQT 246
SIINNMIIGVT+GF K++L+ F I ++ + + +I I C P T
Sbjct: 73 SIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKC-LPGVT 131
Query: 247 ---------EILIKGINKQAVGHVAAEIRR 267
EI+++G + + V AA I++
Sbjct: 132 VSISSAVKDEIILEGNSLENVSQSAANIKQ 161
>ASPGD|ASPL0000053695 [details] [associations]
symbol:AN9465 species:162425 "Emericella nidulans"
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
InterPro:IPR000702 InterPro:IPR002359 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700 EMBL:BN001308
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 KO:K02940
eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 OMA:AVRTVCS EMBL:AACD01000192
RefSeq:XP_868847.1 ProteinModelPortal:Q5AQG5 STRING:Q5AQG5
EnsemblFungi:CADANIAT00001236 GeneID:3684062 KEGG:ani:AN9465.2
Uniprot:Q5AQG5
Length = 192
Score = 144 (55.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 46/154 (29%), Positives = 83/154 (53%)
Query: 128 IPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNI-KNDSNVLYFTAINNSRIAKSMSGTM 185
IP NV+V + S +T++GP G L ++ +++ V + +V+ + SR + T+
Sbjct: 12 IPENVKVHIRSRVVTVEGPRGKLTKDLSHIAVTFGRPKKDVISIEMHHGSRKGVATLRTV 71
Query: 186 RSIINNMIIGVTKGFEKKLQLIGVGF--RAKIEKN-----Y---LNLILG--FSHPILYK 233
R++INN+IIGVTKGF+ K++ + F IEKN Y + LG + ++ +
Sbjct: 72 RTLINNLIIGVTKGFKYKMRYVYAHFPINVNIEKNAETGQYDVEIRNFLGEKYVRRVVCQ 131
Query: 234 IPFDIICETPSQTEILIKGINKQAVGHVAAEIRR 267
+II + E+ + G + +AV AA+I++
Sbjct: 132 PGVEIIASPNVKDELQLSGNSLEAVSQSAADIQQ 165
>TIGR_CMR|APH_0296 [details] [associations]
symbol:APH_0296 "50S ribosomal protein L18" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042255 "ribosome assembly"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 TIGRFAMs:TIGR00060
RefSeq:YP_504908.1 ProteinModelPortal:Q2GL43 STRING:Q2GL43
GeneID:3931248 KEGG:aph:APH_0296 PATRIC:20949166 OMA:KSTRSHI
ProtClustDB:PRK05593 BioCyc:APHA212042:GHPM-326-MONOMER
HAMAP:MF_01337_B Uniprot:Q2GL43
Length = 121
Score = 139 (54.0 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 279 RLMVHRTNLHIYANIISSNA-KILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V ++N H YA +I A + + +ASTLE EV + ++ G A ++ +RI+
Sbjct: 27 RLSVFKSNRHFYAQLIDDEAGRTVAAASTLESEVLAVASRRVNAGAVKIVAKLLAERIS- 85
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
L K FDR +RY G + AD R G F
Sbjct: 86 -GLDAAYRKFVFDRGSYRYMGVVAAFADELRSLGFEF 121
>GENEDB_PFALCIPARUM|PFF0650w [details] [associations]
symbol:PFF0650w "ribosomal protein L18,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0042254 GO:GO:0005840 GO:GO:0003735 EMBL:AL844505
GenomeReviews:AL844505_GR GO:GO:0020011 eggNOG:COG0256
RefSeq:XP_966121.1 ProteinModelPortal:Q6LFD5
EnsemblProtists:PFF0650w:mRNA GeneID:3885756 KEGG:pfa:PFF0650w
EuPathDB:PlasmoDB:PF3D7_0613400 HOGENOM:HOG000281499
ProtClustDB:PTZ00032 Uniprot:Q6LFD5
Length = 213
Score = 145 (56.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 51/144 (35%), Positives = 71/144 (49%)
Query: 238 IICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGINRLMVHRTNLHIYANIISSN 297
++ E + E + K ++ +V EIR K + RL V TN HIYA+II
Sbjct: 74 LLKEKVEKVEKVEKNSDENQCSNVDKEIREG------KRVPRLRVRNTNNHIYASIIDDY 127
Query: 298 AK-ILISA----STLEKEV----RLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVA 348
K +L S +TL K + R N + G +A IG+ I KKAL GI KV
Sbjct: 128 KKYVLCSTCSRDATLSKILGTYRRKATNRVINNGRTIKSAWEIGKIIGKKALSKGIFKVR 187
Query: 349 FDRSGFRYHGRIKFLADAARKNGL 372
FDR+ Y G+++ LA+ AR GL
Sbjct: 188 FDRARHPYAGKVEALAEGARAVGL 211
>UNIPROTKB|Q6LFD5 [details] [associations]
symbol:RPL18 "Putative 50S ribosomal protein L18,
apicoplast" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0042254 GO:GO:0005840 GO:GO:0003735 EMBL:AL844505
GenomeReviews:AL844505_GR GO:GO:0020011 eggNOG:COG0256
RefSeq:XP_966121.1 ProteinModelPortal:Q6LFD5
EnsemblProtists:PFF0650w:mRNA GeneID:3885756 KEGG:pfa:PFF0650w
EuPathDB:PlasmoDB:PF3D7_0613400 HOGENOM:HOG000281499
ProtClustDB:PTZ00032 Uniprot:Q6LFD5
Length = 213
Score = 145 (56.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 51/144 (35%), Positives = 71/144 (49%)
Query: 238 IICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGINRLMVHRTNLHIYANIISSN 297
++ E + E + K ++ +V EIR K + RL V TN HIYA+II
Sbjct: 74 LLKEKVEKVEKVEKNSDENQCSNVDKEIREG------KRVPRLRVRNTNNHIYASIIDDY 127
Query: 298 AK-ILISA----STLEKEV----RLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVA 348
K +L S +TL K + R N + G +A IG+ I KKAL GI KV
Sbjct: 128 KKYVLCSTCSRDATLSKILGTYRRKATNRVINNGRTIKSAWEIGKIIGKKALSKGIFKVR 187
Query: 349 FDRSGFRYHGRIKFLADAARKNGL 372
FDR+ Y G+++ LA+ AR GL
Sbjct: 188 FDRARHPYAGKVEALAEGARAVGL 211
>DICTYBASE|DDB_G0294038 [details] [associations]
symbol:mrpl6 "ribosomal protein L6, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
dictyBase:DDB_G0294038 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB000109 GenomeReviews:AB000109_GR GO:GO:0019843
EMBL:D63523 eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PIR:T43779 RefSeq:NP_050100.1
ProteinModelPortal:O21037 STRING:O21037 GeneID:2193925
KEGG:ddi:DidioMp33 Uniprot:O21037
Length = 170
Score = 131 (51.2 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 45/152 (29%), Positives = 79/152 (51%)
Query: 133 EVTLNSNKITLKGPLGIL-KQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINN 191
++ S KI G +G++ K+ K I+++ N+ Y +SRI + GTM+ I
Sbjct: 17 KIANKSVKIKSSGKMGVITKELKLKEPAIQSN-NIYYLKNHGDSRI---IIGTMKQQIQ- 71
Query: 192 MIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIK 251
GV GF +L+L+G+GF N L L +G+SH IP +++ + ++I++
Sbjct: 72 ---GVLAGFCIELKLVGLGFVVHKVGNTLVLDVGYSHYRSCLIPKEVVVKLEG-SQIILY 127
Query: 252 GINKQAVGHVAAEIRRYYKPEPYKGINRLMVH 283
INK+ V A+ ++ + K YKG L ++
Sbjct: 128 SINKEKVTTFASLLKTFKKINMYKGTGILGIN 159
>TAIR|locus:2062200 [details] [associations]
symbol:AT2G18400 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PRINTS:PR00059 PROSITE:PS00525 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AC006439 UniGene:At.13887 UniGene:At.63473
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 HSSP:P02391 EMBL:AY044317
EMBL:AY088468 IPI:IPI00522811 PIR:H84563 RefSeq:NP_565438.1
ProteinModelPortal:Q9ZPX2 SMR:Q9ZPX2 STRING:Q9ZPX2 PaxDb:Q9ZPX2
PRIDE:Q9ZPX2 EnsemblPlants:AT2G18400.1 GeneID:816355
KEGG:ath:AT2G18400 TAIR:At2g18400 InParanoid:Q9ZPX2 OMA:GYSHEVQ
PhylomeDB:Q9ZPX2 ProtClustDB:CLSN2688231 ArrayExpress:Q9ZPX2
Genevestigator:Q9ZPX2 Uniprot:Q9ZPX2
Length = 102
Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 200 FEKKLQLIGVGFRAKIEK--NYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQA 257
F + L+++GVG++A+ E+ +L L LG+SH + +P + + GI+KQ
Sbjct: 5 FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64
Query: 258 VGHVAAEIRRYYKPEPYKG 276
V AA +R PEPYKG
Sbjct: 65 VHQFAATVRSCKPPEPYKG 83
>TIGR_CMR|ECH_0425 [details] [associations]
symbol:ECH_0425 "ribosomal protein L18" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:YP_507243.1
ProteinModelPortal:Q2GH40 STRING:Q2GH40 GeneID:3927497
KEGG:ech:ECH_0425 PATRIC:20576327 OMA:ASTMQKS
BioCyc:ECHA205920:GJNR-426-MONOMER Uniprot:Q2GH40
Length = 121
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/97 (28%), Positives = 43/97 (44%)
Query: 279 RLMVHRTNLHIYANIISSNA-KILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL + ++N H Y +I + SASTLE+EV N ++ A ++ R+ K
Sbjct: 28 RLSIFKSNRHFYVQLIDDKCGRTFASASTLEREVVALTNRRVNSDSVKIVAKLMSDRLNK 87
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
K FDR ++Y G + A+ R G F
Sbjct: 88 LD---NCKKFIFDRGLYKYTGIVSEFANELRSYGFEF 121
>TAIR|locus:2180310 [details] [associations]
symbol:AT5G27820 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] InterPro:IPR005484 Pfam:PF00861
EMBL:CP002688 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AY085957 EMBL:BT024558 IPI:IPI00535527 RefSeq:NP_198134.1
UniGene:At.30784 HSSP:P09415 ProteinModelPortal:Q8LDK5 SMR:Q8LDK5
STRING:Q8LDK5 PRIDE:Q8LDK5 EnsemblPlants:AT5G27820.1 GeneID:832844
KEGG:ath:AT5G27820 TAIR:At5g27820 HOGENOM:HOG000248743
InParanoid:Q8LDK5 OMA:KMHFTNK PhylomeDB:Q8LDK5
ProtClustDB:CLSN2687140 Genevestigator:Q8LDK5 Uniprot:Q8LDK5
Length = 114
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 280 LMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKK 338
L +H TN ++A +I S A + SAS+ EK +R T++ + AAS IG+ + ++
Sbjct: 21 LKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITR----DVAAASKIGKILGER 76
Query: 339 ALKIGITKVAFD-RSGFRYHGRIKFLADAARKNGL 372
L I V + RYHG++K + D+ R+ G+
Sbjct: 77 LLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111
>TIGR_CMR|CJE_1859 [details] [associations]
symbol:CJE_1859 "ribosomal protein L18" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:YP_179829.1 ProteinModelPortal:Q5HSA6 STRING:Q5HSA6
GeneID:3232486 KEGG:cjr:CJE1859 PATRIC:20045550 OMA:AQAIDDT
BioCyc:CJEJ195099:GJC0-1898-MONOMER Uniprot:Q5HSA6
Length = 118
Score = 103 (41.3 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 292 NIISSNAKILISASTLEKEVRLTL--NTKLGKGGNTFAASIIGQRIAKKALKIGITKVAF 349
++ SN + I A K V L KLG N A I AK I + F
Sbjct: 34 SVFKSNRTLYIQAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVF 93
Query: 350 DRSGFRYHGRIKFLADAARKNGL 372
DR+G+ YHG I LA++ R+NG+
Sbjct: 94 DRNGYVYHGVIAALAESLRENGI 116
>SGD|S000005011 [details] [associations]
symbol:RPL9B "Ribosomal 60S subunit protein L9B" species:4932
"Saccharomyces cerevisiae" [GO:0002181 "cytoplasmic translation"
evidence=IDA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=IDA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000702 InterPro:IPR002359 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700 SGD:S000005011
EMBL:BK006947 GO:GO:0003735 GO:GO:0002181 EMBL:U12141 GO:GO:0019843
EMBL:X86470 EMBL:Z71343 GO:GO:0022625 KO:K02940 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 OMA:AVRTVCS OrthoDB:EOG4RJK9X
GeneTree:ENSGT00390000015224 EMBL:AY693129 PIR:S53915
RefSeq:NP_014332.1 ProteinModelPortal:P51401 SMR:P51401
IntAct:P51401 MINT:MINT-2732420 STRING:P51401 PaxDb:P51401
PeptideAtlas:P51401 EnsemblFungi:YNL067W GeneID:855658
KEGG:sce:YNL067W CYGD:YNL067w NextBio:979917 Genevestigator:P51401
GermOnline:YNL067W Uniprot:P51401
Length = 191
Score = 116 (45.9 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 126 IFIPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNIKNDSNVLYFTAINNS-RIAKSMSG 183
I IP V V++ S + + GP G L +N ++ V +N L A++N R +
Sbjct: 10 IEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGDRKHVAALR 69
Query: 184 TMRSIINNMIIGVTKGFEKKLQLIGVGF 211
T++S+++NMI GVTKG++ K++ + F
Sbjct: 70 TVKSLVDNMITGVTKGYKYKMRYVYAHF 97
>CGD|CAL0003957 [details] [associations]
symbol:RPL9B species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0002181 "cytoplasmic translation"
evidence=IEA] InterPro:IPR000702 InterPro:IPR002359
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
CGD:CAL0003957 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AACQ01000027 EMBL:AACQ01000026 KO:K02940
eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 RefSeq:XP_719935.1 RefSeq:XP_720065.1
ProteinModelPortal:Q5AEN2 STRING:Q5AEN2 GeneID:3638287
GeneID:3638348 KEGG:cal:CaO19.236 KEGG:cal:CaO19.7866
Uniprot:Q5AEN2
Length = 191
Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
Identities = 39/152 (25%), Positives = 74/152 (48%)
Query: 128 IPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNIKNDSN-VLYFTAINNSRIAKSMSGTM 185
IP V V + + + + GP G L ++ ++ V +N + T N R + T+
Sbjct: 12 IPEGVTVDIKARVVKVTGPRGELTKDLKHIDVTFNKINNRAIKITVHNGDRKHVAALRTV 71
Query: 186 RSIINNMIIGVTKGFEKKLQLIGVGFRAKIE------KNYLNL--ILGFSHPILYKIPFD 237
+S+I N+I GVTKG++ K++ + F + ++Y+ + LG KI
Sbjct: 72 KSLIANLITGVTKGYKYKMRFVYAHFPINVNIIKKDGQDYVEIRNFLGEKRVREVKIHEG 131
Query: 238 IICETPS--QTEILIKGINKQAVGHVAAEIRR 267
+ E S + E+++ G + +AV AA+I++
Sbjct: 132 VTMEISSTQKDELIVSGNSLEAVSQNAADIQQ 163
>SGD|S000003115 [details] [associations]
symbol:RPL9A "Ribosomal 60S subunit protein L9A" species:4932
"Saccharomyces cerevisiae" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA] [GO:0002181 "cytoplasmic translation"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000702 InterPro:IPR002359
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PROSITE:PS00700
SGD:S000003115 EMBL:BK006941 GO:GO:0003735 GO:GO:0002181
GO:GO:0019843 EMBL:X60190 EMBL:X99960 PDB:4B6A PDBsum:4B6A PDB:3J16
PDBsum:3J16 GO:GO:0022625 RefSeq:NP_011368.3 GeneID:852730
KEGG:sce:YGL147C KO:K02940 KO:K02835 RefSeq:NP_011372.3
GeneID:852734 KEGG:sce:YGL143C Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PDB:1K5Y PDB:1S1I PDB:3IZS PDB:3O58 PDB:3O5H
PDB:3U5E PDB:3U5I PDBsum:1K5Y PDBsum:1S1I PDBsum:3IZS PDBsum:3O58
PDBsum:3O5H PDBsum:3U5E PDBsum:3U5I HOGENOM:HOG000039905
OMA:RDTRIFQ OrthoDB:EOG4RJK9X EMBL:Z72669 PIR:S19077
ProteinModelPortal:P05738 SMR:P05738 DIP:DIP-4826N IntAct:P05738
MINT:MINT-493534 STRING:P05738 PeptideAtlas:P05738
EnsemblFungi:YGL147C CYGD:YGL147c GeneTree:ENSGT00390000015224
EvolutionaryTrace:P05738 NextBio:972123 Genevestigator:P05738
GermOnline:YGL147C Uniprot:P05738
Length = 191
Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 126 IFIPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNIKNDSNVLYFTAINNS-RIAKSMSG 183
I +P V V++ S + + GP G L +N ++ V +N L A++N R +
Sbjct: 10 IEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALR 69
Query: 184 TMRSIINNMIIGVTKGFEKKLQLIGVGF 211
T++S+++NMI GVTKG++ K++ + F
Sbjct: 70 TVKSLVDNMITGVTKGYKYKMRYVYAHF 97
>GENEDB_PFALCIPARUM|PF13_0129 [details] [associations]
symbol:PF13_0129 "ribosomal protein L6
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0015934 "large
ribosomal subunit" evidence=ISS] InterPro:IPR000702
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0019843 EMBL:AL844509
GO:GO:0015934 KO:K02940 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 HOGENOM:HOG000039905 RefSeq:XP_001349971.1
ProteinModelPortal:Q8IE85 IntAct:Q8IE85 MINT:MINT-1554718
PRIDE:Q8IE85 EnsemblProtists:PF13_0129:mRNA GeneID:814100
KEGG:pfa:PF13_0129 EuPathDB:PlasmoDB:PF3D7_1323100 OMA:EGNDIDN
ProtClustDB:PTZ00027 Uniprot:Q8IE85
Length = 190
Score = 107 (42.7 bits), Expect = 0.00094, P = 0.00094
Identities = 40/153 (26%), Positives = 76/153 (49%)
Query: 126 IFIPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNIKNDSNVLYFTAINNSRIAKSMS-- 182
+ IP V+V +N+ K+T+ G G L+++ +L ++I+ + Y + + S++
Sbjct: 10 VLIPEGVKVAINARKVTVSGKYGTLRRSFRHLPIDIRLNKLKKYIKVVMWFGVPDSLACI 69
Query: 183 GTMRSIINNMIIGVTKGFEKKLQLIGVGF--RAKIEKNYLNL----ILGFSHPILYK-IP 235
T+ + + NM GVTK F K++L+ F + I N + LG K +P
Sbjct: 70 RTVCTHLKNMFTGVTKKFLYKMRLVHAHFPINSNIVDNNTRIEIRNYLGEKSVRFVKALP 129
Query: 236 FDIICETPS-QTEILIKGINKQAVGHVAAEIRR 267
+I ++P+ + EI + G + + V AA I +
Sbjct: 130 GVVIEKSPNVKDEIYVSGADIENVSLTAALIHQ 162
>UNIPROTKB|Q8IE85 [details] [associations]
symbol:PF13_0129 "60S ribosomal protein L6, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000702 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0019843 EMBL:AL844509 GO:GO:0015934 KO:K02940
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039905 RefSeq:XP_001349971.1
ProteinModelPortal:Q8IE85 IntAct:Q8IE85 MINT:MINT-1554718
PRIDE:Q8IE85 EnsemblProtists:PF13_0129:mRNA GeneID:814100
KEGG:pfa:PF13_0129 EuPathDB:PlasmoDB:PF3D7_1323100 OMA:EGNDIDN
ProtClustDB:PTZ00027 Uniprot:Q8IE85
Length = 190
Score = 107 (42.7 bits), Expect = 0.00094, P = 0.00094
Identities = 40/153 (26%), Positives = 76/153 (49%)
Query: 126 IFIPPNVEVTLNSNKITLKGPLGILKQNKNNL-VNIKNDSNVLYFTAINNSRIAKSMS-- 182
+ IP V+V +N+ K+T+ G G L+++ +L ++I+ + Y + + S++
Sbjct: 10 VLIPEGVKVAINARKVTVSGKYGTLRRSFRHLPIDIRLNKLKKYIKVVMWFGVPDSLACI 69
Query: 183 GTMRSIINNMIIGVTKGFEKKLQLIGVGF--RAKIEKNYLNL----ILGFSHPILYK-IP 235
T+ + + NM GVTK F K++L+ F + I N + LG K +P
Sbjct: 70 RTVCTHLKNMFTGVTKKFLYKMRLVHAHFPINSNIVDNNTRIEIRNYLGEKSVRFVKALP 129
Query: 236 FDIICETPS-QTEILIKGINKQAVGHVAAEIRR 267
+I ++P+ + EI + G + + V AA I +
Sbjct: 130 GVVIEKSPNVKDEIYVSGADIENVSLTAALIHQ 162
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 374 357 0.00080 117 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 72
No. of states in DFA: 574 (61 KB)
Total size of DFA: 188 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 28.97u 0.09s 29.06t Elapsed: 00:00:11
Total cpu time: 28.97u 0.09s 29.06t Elapsed: 00:00:12
Start: Thu Aug 15 11:29:55 2013 End: Thu Aug 15 11:30:07 2013