RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8860
(374 letters)
>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 130
Score = 117 bits (295), Expect = 6e-33
Identities = 59/120 (49%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 3 MSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELK 62
M+DPIADMLT IRN +V +K+ +P+SKIK IA++LK EG+I+D+ I+ + L+
Sbjct: 2 MTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIE-DNKQGILR 60
Query: 63 ILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSMG 122
I LKY N VI LKR+S+PGLR+Y +P+++NGLG+ I+ST+ G++TD++AR G
Sbjct: 61 IFLKYGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKG 120
>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
[TaxId: 274]}
Length = 136
Score = 115 bits (290), Expect = 3e-32
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 5 DPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKF----- 59
DPIADMLT IRN V K+ +P+S+ K I ++L EG+IK + + +
Sbjct: 2 DPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYL 61
Query: 60 --ELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRK 117
+ VI ++R+S+PG R+Y IP++ GLG+ I+ST+ G++TDR+
Sbjct: 62 KYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDRE 121
Query: 118 ARSMG 122
AR +G
Sbjct: 122 ARKLG 126
>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 111 bits (280), Expect = 8e-31
Identities = 68/118 (57%), Positives = 90/118 (76%), Gaps = 2/118 (1%)
Query: 5 DPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKIL 64
DPIADMLT IRNGQ NK + MPSSK+K+AIA VLK+EG+I+DF + K EL++
Sbjct: 2 DPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEG--DTKPELELT 59
Query: 65 LKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSMG 122
LKY+ + V+E ++RVSRPGLRIYK KD +PK+M GLG+ ++ST+ G++TDR AR G
Sbjct: 60 LKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAG 117
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 105 bits (263), Expect = 8e-29
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 10/92 (10%)
Query: 279 RLMVHRTNLHIYANIIS-SNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V R+ HIYA II L+SAS+L ++ KG T A +G+ +A+
Sbjct: 3 RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKL---------KGNKTEVARQVGRALAE 53
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARK 369
KAL +GI +VAFDR ++YHGR+K LA+ AR+
Sbjct: 54 KALALGIKQVAFDRGPYKYHGRVKALAEGARE 85
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 95
Score = 102 bits (256), Expect = 1e-27
Identities = 44/77 (57%), Positives = 61/77 (79%)
Query: 200 FEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVG 259
F KKLQL+GVG+RA ++ N +NL LGFSHP+ +++P I E P+QTEI++KG +KQ +G
Sbjct: 1 FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIG 60
Query: 260 HVAAEIRRYYKPEPYKG 276
VAA++R Y +PEPYKG
Sbjct: 61 QVAADLRAYRRPEPYKG 77
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 101 bits (254), Expect = 2e-27
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 200 FEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVG 259
+ K+L + G+G+RA++ L L +GFSHP++ + P I E P T + + GI+KQ VG
Sbjct: 1 YSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVG 60
Query: 260 HVAAEIRRYYKPEPYKG 276
VAA IR KP Y
Sbjct: 61 QVAANIRAIRKPSAYHE 77
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 129
Score = 101 bits (254), Expect = 4e-27
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 2 SMSDPIADMLTYIRNGQIVNKKKI-IMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFE 60
S+ DP+A+ L +I N + V KK + I P+SK+ + KV++D GYI +F I
Sbjct: 1 SLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFI-EDGRAGI 59
Query: 61 LKILLKYYMNR-PVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKAR 119
K+ L +N+ I+ V + G ++ + G++I+ST G+++ +A+
Sbjct: 60 FKVELIGKINKCGAIKPRFPVKKFGYEKFEKR---YLPARDFGILIVSTTQGVMSHEEAK 116
Query: 120 SMG 122
G
Sbjct: 117 KRG 119
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 89
Score = 100 bits (251), Expect = 6e-27
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 200 FEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVG 259
+EK L+L+GVG+RA + L L +G+SHP+ + + E PSQT+I++KG +KQ VG
Sbjct: 1 YEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVG 60
Query: 260 HVAAEIRRYYKPEPYKG 276
+AA IR PEPYKG
Sbjct: 61 ELAANIRAVRPPEPYKG 77
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 97
Score = 97.2 bits (242), Expect = 1e-25
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 279 RLMVHRTNLHIYANIIS-SNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAK 337
RL V R+N HIYA II + + ++SASTL+KE L N AA +G+ +AK
Sbjct: 7 RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF------GLDSTNNIEAAKKVGELVAK 60
Query: 338 KALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
+AL+ GI +V FDR G+ YHGR+K LADAAR+ GL F
Sbjct: 61 RALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 97
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 90
Score = 96.8 bits (241), Expect = 1e-25
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 200 FEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVG 259
+ L+L GVGFRAK+ L + +G+SHP++ + P + P T I + GI+KQ VG
Sbjct: 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVG 60
Query: 260 HVAAEIRRYYKPEPYKG 276
VAA +R+ KP+ Y G
Sbjct: 61 QVAANVRKVRKPDAYHG 77
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 92.7 bits (230), Expect = 8e-24
Identities = 48/98 (48%), Positives = 72/98 (73%), Gaps = 5/98 (5%)
Query: 276 GINRLMVHRTNLHIYANIIS-SNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQR 334
G RL+VHRT HIYA +I+ + +++L++AST+EK + +L GN AA+ +G+
Sbjct: 20 GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKA----IAEQLKYTGNKDAAAAVGKA 75
Query: 335 IAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGL 372
+A++AL+ GI V+FDRSGF+YHGR++ LADAAR+ GL
Sbjct: 76 VAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGL 113
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 86.4 bits (214), Expect = 7e-22
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 122 GKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSM 181
GK PI +P V V +KGP G L N + ++ D + L ++++ +++
Sbjct: 1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRAL 60
Query: 182 SGTMRSIINNMIIGVTKG 199
G R+++ N + GV+ G
Sbjct: 61 HGLTRTLVANAVKGVSDG 78
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 86.0 bits (213), Expect = 1e-21
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 122 GKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSM 181
K P+ +P V+V +N IT+KG G L + N+ V +K+ N L F + +
Sbjct: 4 AKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQ 63
Query: 182 SGTMRSIINNMIIGVTKG 199
+GT R+++N+M+IGVT+G
Sbjct: 64 AGTARALLNSMVIGVTEG 81
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 104
Score = 86.5 bits (214), Expect = 1e-21
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 275 KGINRLMVHRTNLHIYANIIS-SNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQ 333
G RL V+R++ HIYA II S + L +AS+ + G T A+ +G+
Sbjct: 17 SGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALK----------SGNKTDTAAAVGK 66
Query: 334 RIAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNG 371
+A A + GI +V FDR ++YHGR+K LADAAR+ G
Sbjct: 67 ALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGG 104
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 82.2 bits (203), Expect = 2e-20
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 125 PIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGT 184
PI IP V VT+N N +T+KGP G L + + + I + NV+ T ++ + +++ GT
Sbjct: 1 PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGT 60
Query: 185 MRSIINNMIIGVTKG 199
RS++ NM+ GV+KG
Sbjct: 61 TRSLLANMVEGVSKG 75
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 78.3 bits (193), Expect = 5e-19
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 129 PPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSI 188
P V V + ++ +KGP G L+ + + + + V+ ++ R KS+ G R++
Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTL 60
Query: 189 INNMIIGVTKG 199
I N + GV++G
Sbjct: 61 IANAVKGVSEG 71
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 75.3 bits (185), Expect = 8e-18
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 123 KMPIFIPPNVEVTLNSNKITLKGPLGILKQN-KNNLVNIKNDSNVLYFTAINNSRIAKSM 181
++ + IP +V+ + IT++G G + + +++ D + + + ++ S
Sbjct: 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMST 61
Query: 182 SGTMRSIINNMIIGVTKG 199
GT +S I NM GVT+G
Sbjct: 62 IGTFQSHIENMFHGVTEG 79
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 186
Score = 73.8 bits (181), Expect = 4e-16
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 276 GINRLMVHRTNLHIYANIISS---NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIG 332
G RL+ ++N H+ A +++ L SA + + GN +A + G
Sbjct: 30 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEY----GWEAPTGNMPSAYLTG 85
Query: 333 QRIAKKALKIGITKVAFD--RSGFRYHGRIKFLADAARKNGLN 373
+A + G+ + D + ++ + + A GL+
Sbjct: 86 LLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLD 128
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 69.5 bits (170), Expect = 9e-16
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKN----NLVNIKNDSNVLYFTAINNSR 176
+ + IP NV++TL + +KGP G L+++ N L + L +R
Sbjct: 5 LSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNR 64
Query: 177 IAKSMSGTMRSIINNMIIGVTKG 199
+ T+ S + NMI GVT G
Sbjct: 65 KELATVRTICSHVQNMIKGVTLG 87
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 29.7 bits (67), Expect = 0.15
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 224 LGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRR 267
LG P I D E E+ + G + +AVG AA+I +
Sbjct: 29 LGEKAPRRTTIHGDTDVEI-DGEELTVSGPDIEAVGQTAADIEQ 71
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 28.0 bits (60), Expect = 1.8
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 113 ITDRKARSMGKMPIFIPPNVEVTLNSNKITLKGPLGI---LKQNKNNLVNIKNDSNVL 167
++D S+ + E+ L++N + G L + ++Q L +
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 27.0 bits (58), Expect = 3.9
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 325 TFAASIIGQRIAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374
IG+RI ++ +G R + + ++ G
Sbjct: 9 VGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKL 58
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 26.8 bits (59), Expect = 4.4
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 41 KDEGYIKDFFIIKCFKNKFE-LKILLKYYMNRPVIECLKRVSRPGLRIYKNKD 92
K G + DF LK++ K LK RP ++ K
Sbjct: 126 KRRGALIDFENGTVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKT 178
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 26.5 bits (57), Expect = 4.8
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 327 AASIIGQRIAKKALKIGITKVAFDRSGFRYH 357
A G +A++ G R R
Sbjct: 11 ATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41
>d1p35a_ b.28.1.1 (A:) Baculovirus p35 protein {AcMNPV (Autographa
californica nuclear polyhedrosis virus) [TaxId: 46015]}
Length = 299
Score = 26.4 bits (58), Expect = 6.2
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 36 IAKVLKDEGYIKDFFIIKCFKNKFELKILLKY-YMNRPVIECLKRVSRPGLRIYKNK 91
K KDE Y K+KF KIL + Y ++ IE ++ P L +N
Sbjct: 91 SIKYFKDEHYSVSCQNGSVLKSKFA-KILKSHDYTDKKSIEAYEKYCLPKLVDERND 146
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 26.1 bits (57), Expect = 7.5
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 3 MSDPIADMLTYIRNGQIV 20
+S I + I +GQI
Sbjct: 231 VSAYIPTNVISITDGQIF 248
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 25.9 bits (55), Expect = 9.7
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 325 TFAASIIGQRIAKKALKIGITKVAFDRSGFRYHGRIK 361
A IG+ +AK +L +G R K
Sbjct: 9 IGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEK 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.391
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,378,929
Number of extensions: 67514
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 40
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)