BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8861
(550 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|152980403|ref|YP_001355076.1| 30S ribosomal protein S4 [Janthinobacterium sp. Marseille]
gi|179308084|sp|A6T3H9.1|RS4_JANMA RecName: Full=30S ribosomal protein S4
gi|151280480|gb|ABR88890.1| small subunit ribosomal protein S4 [Janthinobacterium sp.
Marseille]
Length = 207
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 147/200 (73%), Positives = 170/200 (85%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILE+QFRRYF E R KG TGE +LKLLE+R DNVVYRMGF STR+E RQL+S
Sbjct: 61 KVKRMYGILERQFRRYFAEADRRKGNTGETLLKLLEARLDNVVYRMGFGSTRAEGRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNIASY++KPGD+I+VREK+KKQ RI +L L+E S SW++VDAKKME
Sbjct: 121 HKAFTVNGIVVNIASYQVKPGDVIAVREKSKKQVRIVEALSLAEQSGMPSWVSVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K+ P+RSE AND+N+ L
Sbjct: 181 GTYKAAPDRSEIANDVNESL 200
>gi|398833116|ref|ZP_10591256.1| ribosomal protein S4, bacterial/organelle type [Herbaspirillum sp.
YR522]
gi|398222102|gb|EJN08490.1| ribosomal protein S4, bacterial/organelle type [Herbaspirillum sp.
YR522]
Length = 207
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 146/200 (73%), Positives = 169/200 (84%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K+VNIASY +K GD++++REKAKKQ RIA +L L+E S SW++VD+KK+E
Sbjct: 121 HKALTVNGKVVNIASYSVKAGDVVAIREKAKKQVRIAEALSLAEQSGYPSWVSVDSKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
FKS P+RSE AND+N+ L
Sbjct: 181 ATFKSSPDRSEIANDVNESL 200
>gi|340785621|ref|YP_004751086.1| 30S ribosomal protein S4 [Collimonas fungivorans Ter331]
gi|340550888|gb|AEK60263.1| SSU ribosomal protein S4p (S9e) [Collimonas fungivorans Ter331]
Length = 207
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/200 (73%), Positives = 168/200 (84%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILE+QFRRYF E R KG TGE +L+LLE+R DNVVYRMGF STR+E RQL+S
Sbjct: 61 KVKRMYGILERQFRRYFAEADRRKGNTGETLLRLLEARLDNVVYRMGFGSTRAEGRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNIASY++K GD+I+VREKAKKQ RI +L L+E SW++VDAKKME
Sbjct: 121 HKAFTVNGNVVNIASYQVKTGDVIAVREKAKKQVRIVEALSLAEQGGMPSWVSVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R+E AND+N+ L
Sbjct: 181 GTFKSLPDRNEIANDVNESL 200
>gi|300309481|ref|YP_003773573.1| 30S ribosomal protein S4 [Herbaspirillum seropedicae SmR1]
gi|300072266|gb|ADJ61665.1| 30S ribosomal subunit S4 protein [Herbaspirillum seropedicae SmR1]
Length = 207
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 145/200 (72%), Positives = 168/200 (84%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNIASY +K GD+I+VREKAKKQ RIA +L L+E + W++VD+KK+E
Sbjct: 121 HKALTVNGQVVNIASYSVKAGDVIAVREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RSE A D+N+ L
Sbjct: 181 GTFKSSPDRSEIAADVNESL 200
>gi|399017013|ref|ZP_10719214.1| ribosomal protein S4, bacterial/organelle type [Herbaspirillum sp.
CF444]
gi|398104343|gb|EJL94485.1| ribosomal protein S4, bacterial/organelle type [Herbaspirillum sp.
CF444]
Length = 207
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 171/200 (85%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +LKLLE+R DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLKLLEARLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN +VNIASY++K GD+++VREKAKKQ RIA +L L+E S SW++VDAKK+E
Sbjct: 121 HKALTVNGIVVNIASYQVKAGDVVAVREKAKKQVRIAEALSLAEQSGFPSWVSVDAKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G++K+ P+R+E AND+N+ L
Sbjct: 181 GIYKTSPDRNEIANDVNESL 200
>gi|134096297|ref|YP_001101372.1| 30S ribosomal protein S4 [Herminiimonas arsenicoxydans]
gi|172044175|sp|A4G9R4.1|RS4_HERAR RecName: Full=30S ribosomal protein S4
gi|133740200|emb|CAL63251.1| 30S ribosomal subunit protein S4 [Herminiimonas arsenicoxydans]
Length = 207
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 146/200 (73%), Positives = 167/200 (83%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILE+QFRRYF E R KG TGE +LKLLE+R DNVVYRMGF STR+E RQL+S
Sbjct: 61 KVKRMYGILERQFRRYFAEADRRKGNTGETLLKLLETRLDNVVYRMGFGSTRAEGRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNIASY++KPGDI++VREK+KKQ RI +L L+E SW+ VD+KKME
Sbjct: 121 HKAFTVNGIVVNIASYQVKPGDIVAVREKSKKQVRIVEALSLAEQIGMPSWVAVDSKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RSE A D+N+ L
Sbjct: 181 GTFKSVPDRSEIAADVNESL 200
>gi|409408726|ref|ZP_11257161.1| 30S ribosomal protein S4 [Herbaspirillum sp. GW103]
gi|386432048|gb|EIJ44876.1| 30S ribosomal protein S4 [Herbaspirillum sp. GW103]
Length = 207
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 144/200 (72%), Positives = 168/200 (84%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNIASY +K GD+I++REKAKKQ RIA +L L+E + W++VD+KK+E
Sbjct: 121 HKALTVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RSE A D+N+ L
Sbjct: 181 GTFKSSPDRSEIAADVNESL 200
>gi|415943236|ref|ZP_11556036.1| 30S ribosomal protein S4 [Herbaspirillum frisingense GSF30]
gi|407758752|gb|EKF68536.1| 30S ribosomal protein S4 [Herbaspirillum frisingense GSF30]
Length = 207
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 168/200 (84%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNIASY +K GD++++REKAKKQ RIA +L L+E + W++VD+KK+E
Sbjct: 121 HKALTVNGQVVNIASYSVKAGDVVAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RSE A D+N+ L
Sbjct: 181 GTFKSAPDRSEIAADVNESL 200
>gi|237747389|ref|ZP_04577869.1| small subunit ribosomal protein S4 [Oxalobacter formigenes HOxBLS]
gi|229378740|gb|EEO28831.1| small subunit ribosomal protein S4 [Oxalobacter formigenes HOxBLS]
Length = 207
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 144/200 (72%), Positives = 168/200 (84%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD++PGQHG SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDVKPGQHGMKSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILEKQFRRYF E R KG TG+ +++LLESR DNVVYRMGF STR+E+RQL+S
Sbjct: 61 KVKRMYGILEKQFRRYFAEAERRKGNTGDNLMQLLESRLDNVVYRMGFGSTRAESRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI SY +KP D+I++REKAKKQ RI SL L+E W++VD+KKME
Sbjct: 121 HQALMVNGKVVNIPSYLVKPEDVITIREKAKKQNRIVESLSLAEQIGLADWVSVDSKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+RSEFAND+N+ L
Sbjct: 181 GVFKRVPDRSEFANDVNESL 200
>gi|445494447|ref|ZP_21461491.1| 30S ribosomal protein S4 [Janthinobacterium sp. HH01]
gi|444790608|gb|ELX12155.1| 30S ribosomal protein S4 [Janthinobacterium sp. HH01]
Length = 207
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 167/200 (83%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD++PGQHG SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDVKPGQHGVKSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TGE +LKLLE+R DNV YRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLETRLDNVAYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN ++VNIASY +K GD+I+VREK+KKQ RI +L L+E +W++VDAKKME
Sbjct: 121 HKAFTVNGQVVNIASYVVKVGDVIAVREKSKKQVRIVEALSLAEQVGMPAWVSVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R+E AND+N+ L
Sbjct: 181 GTFKSLPERNEIANDVNESL 200
>gi|395760727|ref|ZP_10441396.1| 30S ribosomal protein S4 [Janthinobacterium lividum PAMC 25724]
Length = 207
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/200 (72%), Positives = 166/200 (83%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD++PGQHG SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDVKPGQHGVKSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TGE +LKLLE+R DNV YRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEADRRKGNTGETLLKLLETRLDNVCYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNIASY +K GDI++VREK+KKQ RI +L L+E SW++VDAKKME
Sbjct: 121 HKAFTVNGIVVNIASYAVKVGDIVAVREKSKKQVRIVEALSLAEQVGMPSWVSVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R+E AND+N+ L
Sbjct: 181 GTFKSLPERNEIANDVNESL 200
>gi|427399568|ref|ZP_18890806.1| 30S ribosomal protein S4 [Massilia timonae CCUG 45783]
gi|425721330|gb|EKU84243.1| 30S ribosomal protein S4 [Massilia timonae CCUG 45783]
Length = 207
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 167/200 (83%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD++PGQHG SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDVKPGQHGVKSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +LKLLESR DNV YRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEANRRKGNTGETLLKLLESRLDNVAYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNIASY++K GD+I+VREKAKKQ RIA +L L+E SW++VDAKK+E
Sbjct: 121 HKAFTVNGNVVNIASYQVKTGDVIAVREKAKKQVRIAEALSLAEQVGFPSWVSVDAKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F+S P R+E A D+N+ L
Sbjct: 181 GTFRSFPERNEIAADVNEAL 200
>gi|237749539|ref|ZP_04580019.1| small subunit ribosomal protein S4 [Oxalobacter formigenes OXCC13]
gi|229380901|gb|EEO30992.1| small subunit ribosomal protein S4 [Oxalobacter formigenes OXCC13]
Length = 207
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/200 (71%), Positives = 167/200 (83%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHG SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDTKPGQHGAKSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILE+QFRRYF E R KG TG+ +++LLESR DNVVYRMGF STR+E+RQL+S
Sbjct: 61 KVKRMYGILERQFRRYFAEAERRKGNTGDNLMQLLESRLDNVVYRMGFGSTRAESRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI SY +KP D+I++REK+KKQ RI SL L+E W++VD+KKME
Sbjct: 121 HQALMVNGKVVNIPSYLVKPEDVITIREKSKKQNRIVESLSLAEQIGMADWVSVDSKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+RSEFAND+N+ L
Sbjct: 181 GVFKRIPDRSEFANDVNESL 200
>gi|300690185|ref|YP_003751180.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum PSI07]
gi|299077245|emb|CBJ49871.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum PSI07]
gi|344168991|emb|CCA81312.1| 30S ribosomal subunit protein S4 [blood disease bacterium R229]
gi|344172706|emb|CCA85360.1| 30S ribosomal subunit protein S4 [Ralstonia syzygii R24]
Length = 207
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGESLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S ++K GD++++REK+KKQ RIA SL L+E + SW+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQVKAGDVVAIREKSKKQVRIAESLSLAEQTGFPSWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQAPDRADIAGDINESL 200
>gi|393778223|ref|ZP_10366503.1| Ribosomal protein S4 [Ralstonia sp. PBA]
gi|392714777|gb|EIZ02371.1| Ribosomal protein S4 [Ralstonia sp. PBA]
Length = 207
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 165/200 (82%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGEKLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++NI S +IK GD+++VREK+K Q RI +SL+L+E + SW+TVD+KKME
Sbjct: 121 HKAVTVNGIVLNIPSAQIKAGDVVAVREKSKGQARIVDSLQLAEQNGMPSWVTVDSKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ A DIN+ L
Sbjct: 181 GVFKQAPDRADIAGDINESL 200
>gi|421890473|ref|ZP_16321332.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum K60-1]
gi|378964184|emb|CCF98080.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum K60-1]
Length = 207
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++REK+KKQ RIA SL L+E S +W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKAGDVVAIREKSKKQVRIAESLSLAEQSGFPTWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + A DIN+ L
Sbjct: 181 GTFKQAPDRVDIAGDINESL 200
>gi|83748174|ref|ZP_00945201.1| SSU ribosomal protein S4P [Ralstonia solanacearum UW551]
gi|207744551|ref|YP_002260943.1| 30s ribosomal protein s4 [Ralstonia solanacearum IPO1609]
gi|386332172|ref|YP_006028341.1| 30S ribosomal protein S4 [Ralstonia solanacearum Po82]
gi|83725142|gb|EAP72293.1| SSU ribosomal protein S4P [Ralstonia solanacearum UW551]
gi|206595957|emb|CAQ62884.1| 30s ribosomal protein s4 [Ralstonia solanacearum IPO1609]
gi|334194620|gb|AEG67805.1| 30S ribosomal protein S4 [Ralstonia solanacearum Po82]
Length = 207
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++REK+KKQ RIA SL L+E S +W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQSGFPTWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + A DIN+ L
Sbjct: 181 GTFKQAPDRVDIAGDINESL 200
>gi|241664507|ref|YP_002982867.1| 30S ribosomal protein S4 [Ralstonia pickettii 12D]
gi|240866534|gb|ACS64195.1| ribosomal protein S4 [Ralstonia pickettii 12D]
Length = 207
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD+I++REK+KKQ RIA SL L+E + +W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKTGDVIAIREKSKKQVRIAESLTLAEQTGFPTWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQVPDRADIAGDINESL 200
>gi|187930339|ref|YP_001900826.1| 30S ribosomal protein S4 [Ralstonia pickettii 12J]
gi|226699109|sp|B2UEJ4.1|RS4_RALPJ RecName: Full=30S ribosomal protein S4
gi|187727229|gb|ACD28394.1| ribosomal protein S4 [Ralstonia pickettii 12J]
Length = 207
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S ++K GD+I++REK+KKQ RIA SL L+E S W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQVKSGDVIAIREKSKKQVRIAESLTLAEQSGFPIWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQAPDRADIAGDINESL 200
>gi|309782859|ref|ZP_07677579.1| ribosomal protein S4 [Ralstonia sp. 5_7_47FAA]
gi|404397555|ref|ZP_10989345.1| 30S ribosomal protein S4 [Ralstonia sp. 5_2_56FAA]
gi|308918283|gb|EFP63960.1| ribosomal protein S4 [Ralstonia sp. 5_7_47FAA]
gi|348612674|gb|EGY62288.1| 30S ribosomal protein S4 [Ralstonia sp. 5_2_56FAA]
Length = 207
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD+I++REK+KKQ RIA SL L+E + +W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKTGDVIAIREKSKKQVRIAESLTLAEQTGFPTWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQIPDRADIAGDINESL 200
>gi|299065440|emb|CBJ36609.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum CMR15]
Length = 207
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++REK+KKQ RIA SL L+E + W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKSGDVVTIREKSKKQVRIAESLSLAEQTGFPGWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQAPDRADIAGDINESL 200
>gi|300702805|ref|YP_003744406.1| 30S ribosomal protein S4 [Ralstonia solanacearum CFBP2957]
gi|299070467|emb|CBJ41762.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum CFBP2957]
Length = 207
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TG +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGANLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++REK+KKQ RIA SL L+E S +W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKAGDVVAIREKSKKQVRIAESLSLAEQSGFPTWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + A DIN+ L
Sbjct: 181 GTFKQAPDRVDIAGDINESL 200
>gi|323527577|ref|YP_004229730.1| 30S ribosomal protein S4 [Burkholderia sp. CCGE1001]
gi|323384579|gb|ADX56670.1| ribosomal protein S4 [Burkholderia sp. CCGE1001]
Length = 207
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN + NI S ++K GD+++VRE++KKQ RI +L L+E SW++VD+KK E
Sbjct: 121 HKAIMVNGVVSNIPSMQVKAGDVVAVREQSKKQARILEALSLAEQGGMPSWVSVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RSE A DIN+ L
Sbjct: 181 GTFKQKPERSEIAGDINESL 200
>gi|17547713|ref|NP_521115.1| 30S ribosomal protein S4 [Ralstonia solanacearum GMI1000]
gi|26399428|sp|Q8XV37.1|RS4_RALSO RecName: Full=30S ribosomal protein S4
gi|17430018|emb|CAD16703.1| probable 30s ribosomal protein s4 [Ralstonia solanacearum GMI1000]
Length = 207
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 161/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++REK+KKQ RIA SL L+E + W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQTGFPGWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + A DIN+ L
Sbjct: 181 GTFKQAPDRGDIAGDINESL 200
>gi|53720796|ref|YP_109782.1| 30S ribosomal protein S4 [Burkholderia pseudomallei K96243]
gi|53723829|ref|YP_104141.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 23344]
gi|67640848|ref|ZP_00439641.1| 30S ribosomal protein S4 [Burkholderia mallei GB8 horse 4]
gi|76811379|ref|YP_335115.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710b]
gi|121601043|ref|YP_994431.1| 30S ribosomal protein S4 [Burkholderia mallei SAVP1]
gi|124384949|ref|YP_001027920.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10229]
gi|126439277|ref|YP_001060725.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 668]
gi|126448998|ref|YP_001083015.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10247]
gi|134283223|ref|ZP_01769924.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 305]
gi|167001674|ref|ZP_02267466.1| 30S ribosomal protein S4 [Burkholderia mallei PRL-20]
gi|167721552|ref|ZP_02404788.1| 30S ribosomal protein S4 [Burkholderia pseudomallei DM98]
gi|167740526|ref|ZP_02413300.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 14]
gi|167817731|ref|ZP_02449411.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 91]
gi|167826128|ref|ZP_02457599.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 9]
gi|167896212|ref|ZP_02483614.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 7894]
gi|167904594|ref|ZP_02491799.1| 30S ribosomal protein S4 [Burkholderia pseudomallei NCTC 13177]
gi|167912859|ref|ZP_02499950.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 112]
gi|167920818|ref|ZP_02507909.1| 30S ribosomal protein S4 [Burkholderia pseudomallei BCC215]
gi|226198240|ref|ZP_03793811.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pakistan 9]
gi|237814120|ref|YP_002898571.1| 30S ribosomal protein S4 [Burkholderia pseudomallei MSHR346]
gi|254175265|ref|ZP_04881926.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 10399]
gi|254180364|ref|ZP_04886962.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1655]
gi|254190327|ref|ZP_04896835.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pasteur 52237]
gi|254198547|ref|ZP_04904968.1| 30S ribosomal protein S4 [Burkholderia pseudomallei S13]
gi|254201214|ref|ZP_04907578.1| 30S ribosomal protein S4 [Burkholderia mallei FMH]
gi|254206555|ref|ZP_04912906.1| 30S ribosomal protein S4 [Burkholderia mallei JHU]
gi|254260076|ref|ZP_04951130.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710a]
gi|254300601|ref|ZP_04968046.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 406e]
gi|61215450|sp|Q62GN0.1|RS4_BURMA RecName: Full=30S ribosomal protein S4
gi|61215463|sp|Q63Q36.1|RS4_BURPS RecName: Full=30S ribosomal protein S4
gi|90101678|sp|Q3JMT8.1|RS4_BURP1 RecName: Full=30S ribosomal protein S4
gi|171769469|sp|A1V878.1|RS4_BURMS RecName: Full=30S ribosomal protein S4
gi|171769829|sp|A2S7K1.1|RS4_BURM9 RecName: Full=30S ribosomal protein S4
gi|171855085|sp|A3MRX9.1|RS4_BURM7 RecName: Full=30S ribosomal protein S4
gi|171855116|sp|A3NEF4.1|RS4_BURP6 RecName: Full=30S ribosomal protein S4
gi|52211210|emb|CAH37199.1| 30S ribosomal protein S4 [Burkholderia pseudomallei K96243]
gi|52427252|gb|AAU47845.1| ribosomal protein S4 [Burkholderia mallei ATCC 23344]
gi|76580832|gb|ABA50307.1| ribosomal protein S4 [Burkholderia pseudomallei 1710b]
gi|121229853|gb|ABM52371.1| 30S ribosomal protein S4 [Burkholderia mallei SAVP1]
gi|124292969|gb|ABN02238.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10229]
gi|126218770|gb|ABN82276.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 668]
gi|126241868|gb|ABO04961.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10247]
gi|134245418|gb|EBA45511.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 305]
gi|147747108|gb|EDK54184.1| 30S ribosomal protein S4 [Burkholderia mallei FMH]
gi|147752097|gb|EDK59163.1| 30S ribosomal protein S4 [Burkholderia mallei JHU]
gi|157810528|gb|EDO87698.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 406e]
gi|157938003|gb|EDO93673.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pasteur 52237]
gi|160696310|gb|EDP86280.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 10399]
gi|169655287|gb|EDS87980.1| 30S ribosomal protein S4 [Burkholderia pseudomallei S13]
gi|184210903|gb|EDU07946.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1655]
gi|225929760|gb|EEH25776.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pakistan 9]
gi|237504346|gb|ACQ96664.1| ribosomal protein S4 [Burkholderia pseudomallei MSHR346]
gi|238521643|gb|EEP85093.1| 30S ribosomal protein S4 [Burkholderia mallei GB8 horse 4]
gi|243062571|gb|EES44757.1| 30S ribosomal protein S4 [Burkholderia mallei PRL-20]
gi|254218765|gb|EET08149.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710a]
Length = 207
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>gi|126454036|ref|YP_001068009.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106a]
gi|167847640|ref|ZP_02473148.1| 30S ribosomal protein S4 [Burkholderia pseudomallei B7210]
gi|242314939|ref|ZP_04813955.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106b]
gi|403520442|ref|YP_006654576.1| 30S ribosomal protein S4 [Burkholderia pseudomallei BPC006]
gi|171855208|sp|A3P088.1|RS4_BURP0 RecName: Full=30S ribosomal protein S4
gi|126227678|gb|ABN91218.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106a]
gi|242138178|gb|EES24580.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106b]
gi|403076084|gb|AFR17664.1| 30S ribosomal protein S4 [Burkholderia pseudomallei BPC006]
Length = 207
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAVTVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>gi|167838187|ref|ZP_02465046.1| 30S ribosomal protein S4 [Burkholderia thailandensis MSMB43]
Length = 207
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++S+REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVSIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>gi|430805773|ref|ZP_19432888.1| 30S ribosomal protein S4 [Cupriavidus sp. HMR-1]
gi|429501932|gb|ELA00256.1| 30S ribosomal protein S4 [Cupriavidus sp. HMR-1]
Length = 207
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGEKLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GDI+SVRE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKAGDIVSVREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQAPDRADISGDINESL 200
>gi|421747398|ref|ZP_16185113.1| 30S ribosomal protein S4 [Cupriavidus necator HPC(L)]
gi|409773981|gb|EKN55675.1| 30S ribosomal protein S4 [Cupriavidus necator HPC(L)]
Length = 207
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLE+R DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLETRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++S+RE+AKKQ RIA SL L+E S SW+ VDAKK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKVGDVVSIREQAKKQARIAESLSLAEQSGFPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>gi|307731230|ref|YP_003908454.1| 30S ribosomal protein S4 [Burkholderia sp. CCGE1003]
gi|407714964|ref|YP_006835529.1| 30S ribosomal protein S4 [Burkholderia phenoliruptrix BR3459a]
gi|307585765|gb|ADN59163.1| ribosomal protein S4 [Burkholderia sp. CCGE1003]
gi|407237148|gb|AFT87347.1| small subunit ribosomal protein S4 [Burkholderia phenoliruptrix
BR3459a]
Length = 207
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN + NI S ++K GD+++VRE++KKQ RI +L L+E SW++VD+KK E
Sbjct: 121 HKAIMVNGVVSNIPSMQVKAGDVVAVREQSKKQARILEALSLAEQGGMPSWVSVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>gi|217424827|ref|ZP_03456324.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 576]
gi|217392283|gb|EEC32308.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 576]
Length = 207
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S +++ GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVRAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>gi|94312223|ref|YP_585433.1| 30S ribosomal protein S4 [Cupriavidus metallidurans CH34]
gi|152112253|sp|Q1LI62.1|RS4_RALME RecName: Full=30S ribosomal protein S4
gi|93356075|gb|ABF10164.1| 30S ribosomal subunit protein S4 [Cupriavidus metallidurans CH34]
Length = 207
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GDI+SVRE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILVNGETLNVPSAQIKSGDIVSVREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K P+R++ + DIN+ L
Sbjct: 181 GTYKQAPDRADISGDINESL 200
>gi|238025957|ref|YP_002910188.1| 30S ribosomal protein S4 [Burkholderia glumae BGR1]
gi|237875151|gb|ACR27484.1| 30S ribosomal protein S4 [Burkholderia glumae BGR1]
Length = 207
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN NI S ++KPGD+I++REK+KKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGVASNIPSLQVKPGDVIAIREKSKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQVPERAEIAGDINESL 200
>gi|83720741|ref|YP_443547.1| 30S ribosomal protein S4 [Burkholderia thailandensis E264]
gi|167582598|ref|ZP_02375472.1| 30S ribosomal protein S4 [Burkholderia thailandensis TXDOH]
gi|167620712|ref|ZP_02389343.1| 30S ribosomal protein S4 [Burkholderia thailandensis Bt4]
gi|257137667|ref|ZP_05585929.1| 30S ribosomal protein S4 [Burkholderia thailandensis E264]
gi|123536225|sp|Q2SU52.1|RS4_BURTA RecName: Full=30S ribosomal protein S4
gi|83654566|gb|ABC38629.1| ribosomal protein S4 [Burkholderia thailandensis E264]
Length = 207
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+IS+REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVISIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>gi|254253495|ref|ZP_04946813.1| Ribosomal protein S4 [Burkholderia dolosa AUO158]
gi|124896104|gb|EAY69984.1| Ribosomal protein S4 [Burkholderia dolosa AUO158]
Length = 207
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+I++REKAKKQ RI SL L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVIAIREKAKKQARIVESLSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>gi|170695706|ref|ZP_02886848.1| ribosomal protein S4 [Burkholderia graminis C4D1M]
gi|170139311|gb|EDT07497.1| ribosomal protein S4 [Burkholderia graminis C4D1M]
Length = 207
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+++VRE+ KKQ RI +L L+E SW+ VD+KK E
Sbjct: 121 HKAITVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGMPSWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS+P RS+ A DIN+ L
Sbjct: 181 GTFKSKPERSDIAGDINESL 200
>gi|386863447|ref|YP_006276396.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1026b]
gi|418392854|ref|ZP_12968604.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 354a]
gi|418534596|ref|ZP_13100435.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1026a]
gi|418542140|ref|ZP_13107594.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1258a]
gi|418548665|ref|ZP_13113773.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1258b]
gi|418554601|ref|ZP_13119381.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 354e]
gi|385356319|gb|EIF62436.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1258a]
gi|385357627|gb|EIF63673.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1258b]
gi|385358965|gb|EIF64945.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1026a]
gi|385370077|gb|EIF75350.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 354e]
gi|385374932|gb|EIF79735.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 354a]
gi|385660575|gb|AFI67998.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1026b]
Length = 212
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 6 VARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 65
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 66 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 125
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 126 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 185
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 186 GTFKQVPERADIAGDINESL 205
>gi|167587747|ref|ZP_02380135.1| 30S ribosomal protein S4 [Burkholderia ubonensis Bu]
Length = 207
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + N+ S ++K GD+I++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANVPSQQVKAGDVIAIREKAKKQARIVEALSLAEQGGLASWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>gi|167564391|ref|ZP_02357307.1| 30S ribosomal protein S4 [Burkholderia oklahomensis EO147]
gi|167571538|ref|ZP_02364412.1| 30S ribosomal protein S4 [Burkholderia oklahomensis C6786]
Length = 207
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +N + N+ S ++K GD+IS+REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITLNGVVANVPSQQVKAGDVISIREKAKKQARIVEALSLAEQGGLASWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>gi|424907045|ref|ZP_18330536.1| 30S ribosomal protein S4 [Burkholderia thailandensis MSMB43]
gi|390927402|gb|EIP84811.1| 30S ribosomal protein S4 [Burkholderia thailandensis MSMB43]
Length = 215
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 9 VARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 68
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 69 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 128
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++S+REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 129 HKAITVNGIVANIPSQQVKAGDVVSIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 188
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 189 GTFKQMPERADIAGDINESL 208
>gi|91785440|ref|YP_560646.1| 30S ribosomal protein S4 [Burkholderia xenovorans LB400]
gi|123358404|sp|Q13TJ5.1|RS4_BURXL RecName: Full=30S ribosomal protein S4
gi|91689394|gb|ABE32594.1| SSU ribosomal protein S4P [Burkholderia xenovorans LB400]
Length = 207
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN + NI S ++K GD+++VRE+ KKQ RI +L L+E SW+ VD+KK E
Sbjct: 121 HKAIMVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGLPSWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>gi|107024278|ref|YP_622605.1| 30S ribosomal protein S4 [Burkholderia cenocepacia AU 1054]
gi|116688397|ref|YP_834020.1| 30S ribosomal protein S4 [Burkholderia cenocepacia HI2424]
gi|170731707|ref|YP_001763654.1| 30S ribosomal protein S4 [Burkholderia cenocepacia MC0-3]
gi|206558666|ref|YP_002229426.1| 30S ribosomal protein S4 [Burkholderia cenocepacia J2315]
gi|254246578|ref|ZP_04939899.1| Ribosomal protein S4 [Burkholderia cenocepacia PC184]
gi|421864098|ref|ZP_16295786.1| SSU ribosomal protein S4p (S9e) [Burkholderia cenocepacia H111]
gi|444366810|ref|ZP_21166821.1| ribosomal protein S4 [Burkholderia cenocepacia K56-2Valvano]
gi|123371103|sp|Q1BRX3.1|RS4_BURCA RecName: Full=30S ribosomal protein S4
gi|152060938|sp|A0K3Q0.1|RS4_BURCH RecName: Full=30S ribosomal protein S4
gi|226697814|sp|B1JU47.1|RS4_BURCC RecName: Full=30S ribosomal protein S4
gi|226697815|sp|B4E5E5.1|RS4_BURCJ RecName: Full=30S ribosomal protein S4
gi|105894467|gb|ABF77632.1| SSU ribosomal protein S4P [Burkholderia cenocepacia AU 1054]
gi|116646486|gb|ABK07127.1| SSU ribosomal protein S4P [Burkholderia cenocepacia HI2424]
gi|124871354|gb|EAY63070.1| Ribosomal protein S4 [Burkholderia cenocepacia PC184]
gi|169814949|gb|ACA89532.1| ribosomal protein S4 [Burkholderia cenocepacia MC0-3]
gi|198034703|emb|CAR50570.1| 30S ribosomal protein S4 [Burkholderia cenocepacia J2315]
gi|358076051|emb|CCE46664.1| SSU ribosomal protein S4p (S9e) [Burkholderia cenocepacia H111]
gi|443603970|gb|ELT71943.1| ribosomal protein S4 [Burkholderia cenocepacia K56-2Valvano]
Length = 207
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>gi|78064949|ref|YP_367718.1| 30S ribosomal protein S4 [Burkholderia sp. 383]
gi|90101679|sp|Q39KE2.1|RS4_BURS3 RecName: Full=30S ribosomal protein S4
gi|77965694|gb|ABB07074.1| SSU ribosomal protein S4P [Burkholderia sp. 383]
Length = 207
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKSGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>gi|186477562|ref|YP_001859032.1| 30S ribosomal protein S4 [Burkholderia phymatum STM815]
gi|226697817|sp|B2JI40.1|RS4_BURP8 RecName: Full=30S ribosomal protein S4
gi|184194021|gb|ACC71986.1| ribosomal protein S4 [Burkholderia phymatum STM815]
Length = 207
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+I+VRE+AKKQ RI +L L+E W+ VD+KK E
Sbjct: 121 HKAITVNGVVANIPSLQVKAGDVIAVREQAKKQARILEALSLAEQGGLPQWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ A DIN+ L
Sbjct: 181 GTFKSMPERSDIAGDINESL 200
>gi|312795803|ref|YP_004028725.1| 30S ribosomal protein S4 [Burkholderia rhizoxinica HKI 454]
gi|312167578|emb|CBW74581.1| SSU ribosomal protein S4P [Burkholderia rhizoxinica HKI 454]
Length = 207
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR D VVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDTVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++ NI S ++K GD+++VRE+AKKQTRI +L L+E + W++VDAKK E
Sbjct: 121 HKAITVNGQVANIPSLQVKAGDVVAVREQAKKQTRIQEALSLAEQNNFPGWVSVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ A DIN+ L
Sbjct: 181 GTFKHVPERSDIAGDINESL 200
>gi|73542839|ref|YP_297359.1| 30S ribosomal protein S4 [Ralstonia eutropha JMP134]
gi|90101711|sp|Q46WG8.1|RS4_RALEJ RecName: Full=30S ribosomal protein S4
gi|72120252|gb|AAZ62515.1| SSU ribosomal protein S4P [Ralstonia eutropha JMP134]
Length = 207
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGEKLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD+I++RE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>gi|330815273|ref|YP_004358978.1| 30S ribosomal protein S4 [Burkholderia gladioli BSR3]
gi|327367666|gb|AEA59022.1| 30S ribosomal protein S4 [Burkholderia gladioli BSR3]
Length = 207
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVG 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GDII++REK+KKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVSNIPSLQVKAGDIIAIREKSKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQVPERAEIAGDINESL 200
>gi|374369000|ref|ZP_09627040.1| 30S ribosomal protein S4 [Cupriavidus basilensis OR16]
gi|373099457|gb|EHP40538.1| 30S ribosomal protein S4 [Cupriavidus basilensis OR16]
Length = 207
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGEKLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A L+N + +N+ S ++K GD+I++RE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILLNGQALNVPSAQVKAGDVITIREQSKKQVRIAEALSLAEQSGFPAWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>gi|187925591|ref|YP_001897233.1| 30S ribosomal protein S4 [Burkholderia phytofirmans PsJN]
gi|226697818|sp|B2T726.1|RS4_BURPP RecName: Full=30S ribosomal protein S4
gi|187716785|gb|ACD18009.1| ribosomal protein S4 [Burkholderia phytofirmans PsJN]
Length = 207
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN + NI S ++K GD+++VRE KKQ RI +L L+E SW+ VD+KK E
Sbjct: 121 HKAIVVNGVVSNIPSMQVKAGDVVAVRETKKKQARILEALSLAEQGGMPSWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>gi|170700719|ref|ZP_02891714.1| ribosomal protein S4 [Burkholderia ambifaria IOP40-10]
gi|171318373|ref|ZP_02907531.1| ribosomal protein S4 [Burkholderia ambifaria MEX-5]
gi|402567892|ref|YP_006617237.1| 30S ribosomal protein S4 [Burkholderia cepacia GG4]
gi|152060939|sp|Q0BJ21.2|RS4_BURCM RecName: Full=30S ribosomal protein S4
gi|170134389|gb|EDT02722.1| ribosomal protein S4 [Burkholderia ambifaria IOP40-10]
gi|171096451|gb|EDT41350.1| ribosomal protein S4 [Burkholderia ambifaria MEX-5]
gi|402249089|gb|AFQ49543.1| ribosomal protein S4 [Burkholderia cepacia GG4]
Length = 207
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GDI+++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDIVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>gi|413959406|ref|ZP_11398642.1| 30S ribosomal protein S4 [Burkholderia sp. SJ98]
gi|413940363|gb|EKS72326.1| 30S ribosomal protein S4 [Burkholderia sp. SJ98]
Length = 207
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGPTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++ NI S ++K GD++SVRE+++KQ RI +L L++ SW++VD KK E
Sbjct: 121 HKAIMVNGQVANIPSLQVKSGDVVSVREQSRKQARIVEALSLAQQGGMPSWVSVDEKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ A DIN+ L
Sbjct: 181 GTFKSMPERSDIAGDINESL 200
>gi|385207769|ref|ZP_10034637.1| ribosomal protein S4, bacterial/organelle type [Burkholderia sp.
Ch1-1]
gi|385180107|gb|EIF29383.1| ribosomal protein S4, bacterial/organelle type [Burkholderia sp.
Ch1-1]
Length = 207
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+++VRE+ KKQ RI +L L+E SW+ VD+KK E
Sbjct: 121 HKAITVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGLPSWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>gi|149926591|ref|ZP_01914851.1| 30S ribosomal protein S4 [Limnobacter sp. MED105]
gi|149824520|gb|EDM83736.1| 30S ribosomal protein S4 [Limnobacter sp. MED105]
Length = 207
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DL LKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGTDLSLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGQQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E +R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFAEASRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI SY +K D+IS+REK+K Q RI S+ L+E W+ VDAKK+E
Sbjct: 121 HKAILVNGKAVNIPSYSVKLNDVISIREKSKTQARIVESVTLAEQMGFPLWVNVDAKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R++ + +IN+ L
Sbjct: 181 GSFKSVPERADLSQEINESL 200
>gi|295677907|ref|YP_003606431.1| 30S ribosomal protein S4 [Burkholderia sp. CCGE1002]
gi|295437750|gb|ADG16920.1| ribosomal protein S4 [Burkholderia sp. CCGE1002]
Length = 207
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVG 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+++VRE+ +KQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGVVTNIPSMQVKAGDVVAVREQKRKQARIIEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>gi|339327491|ref|YP_004687184.1| 30S ribosomal protein S4 [Cupriavidus necator N-1]
gi|338167648|gb|AEI78703.1| 30S ribosomal protein S4 [Cupriavidus necator N-1]
Length = 207
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++RE++KKQ RIA SL L+E S +W+ VD+KK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKSGDVVTIREQSKKQVRIAESLSLAEQSGFPTWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>gi|172059366|ref|YP_001807018.1| 30S ribosomal protein S4 [Burkholderia ambifaria MC40-6]
gi|226697813|sp|B1YRQ4.1|RS4_BURA4 RecName: Full=30S ribosomal protein S4
gi|171991883|gb|ACB62802.1| ribosomal protein S4 [Burkholderia ambifaria MC40-6]
Length = 207
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>gi|375103769|ref|ZP_09750030.1| ribosomal protein S4 [Burkholderiales bacterium JOSHI_001]
gi|374664500|gb|EHR69285.1| ribosomal protein S4 [Burkholderiales bacterium JOSHI_001]
Length = 207
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DL+LKSARR++ K K D +PGQHGR SG RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLYLKSARRAISDKAKFDTKPGQHGRTSGQRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E RLKG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEAERLKGNTGANLLTLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY +K GD+I++REKAKKQ R+A++L+L+E +W++VDA KME
Sbjct: 121 HQALTVNGKTVNIPSYLVKAGDVIAIREKAKKQLRVADALKLAESVGLPAWVSVDATKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF ++IN+ L
Sbjct: 181 GTFKKAPDRDEFGSEINESL 200
>gi|416902468|ref|ZP_11930479.1| 30S ribosomal protein S4 [Burkholderia sp. TJI49]
gi|325529703|gb|EGD06566.1| 30S ribosomal protein S4 [Burkholderia sp. TJI49]
Length = 207
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD+I++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGIVANVPSQQVKAGDVIAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>gi|387901055|ref|YP_006331394.1| 30S ribosomal protein S4 [Burkholderia sp. KJ006]
gi|172044373|sp|A4JAR5.2|RS4_BURVG RecName: Full=30S ribosomal protein S4
gi|387575947|gb|AFJ84663.1| SSU ribosomal protein S4p (S9e) [Burkholderia sp. KJ006]
Length = 207
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD+I++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>gi|377821866|ref|YP_004978237.1| 30S ribosomal protein S4 [Burkholderia sp. YI23]
gi|357936701|gb|AET90260.1| ribosomal protein S4 [Burkholderia sp. YI23]
Length = 207
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGPTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN ++ NI S ++K GD++SVRE+++KQ RI +L L++ SW++VD KK E
Sbjct: 121 HKSILVNGQVANIPSLQVKSGDVVSVREQSRKQARIVEALSLAQQGGMPSWVSVDEKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ A DIN+ L
Sbjct: 181 GTFKSMPERSDIAGDINESL 200
>gi|209521361|ref|ZP_03270074.1| ribosomal protein S4 [Burkholderia sp. H160]
gi|209498181|gb|EDZ98323.1| ribosomal protein S4 [Burkholderia sp. H160]
Length = 207
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVG 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+++VRE+ +KQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGVVSNIPSMQVKAGDVVAVREQKRKQARIIEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>gi|194290998|ref|YP_002006905.1| 30S ribosomal protein S4 [Cupriavidus taiwanensis LMG 19424]
gi|226697831|sp|B3R7E4.1|RS4_CUPTR RecName: Full=30S ribosomal protein S4
gi|193224833|emb|CAQ70844.1| 30S ribosomal subunit protein S4 [Cupriavidus taiwanensis LMG
19424]
Length = 207
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKS+RRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSSRRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD+I++RE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>gi|319944771|ref|ZP_08019035.1| 30S ribosomal protein S4 [Lautropia mirabilis ATCC 51599]
gi|319742020|gb|EFV94443.1| 30S ribosomal protein S4 [Lautropia mirabilis ATCC 51599]
Length = 207
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSLDSK K D +PGQHGR SG RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLDSKAKADTKPGQHGRTSGQRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E +R +G TGE++L+LLESR DNVVYRMG +STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEASRKRGNTGELLLQLLESRLDNVVYRMGLASTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA LVN I+N+ S IKP D+ISV+E AKKQ RI ++L L+E SW++VD KME
Sbjct: 121 HRAILVNGAILNVPSAAIKPNDVISVKESAKKQARIVDALNLAEQHNFPSWVSVDKNKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE A D+N+ L
Sbjct: 181 GVFKAYPDRSEIAADVNESL 200
>gi|34499616|ref|NP_903831.1| 30S ribosomal protein S4 [Chromobacterium violaceum ATCC 12472]
gi|41017823|sp|Q7NQH6.1|RS4_CHRVO RecName: Full=30S ribosomal protein S4
gi|34105467|gb|AAQ61822.1| 30S ribosomal protein S4 [Chromobacterium violaceum ATCC 12472]
Length = 206
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 160/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARR+LDSKCKLD PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRALDSKCKLDAAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR YF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRNYFAEAVRRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI SY++K GD++SVREKAKKQ RI L L+E SW++VD+KKME
Sbjct: 120 HKAIVVNGQVVNIPSYQVKAGDVVSVREKAKKQARIVEGLALAEQGGFPSWVSVDSKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RSE ++DIN+ L
Sbjct: 180 GTFKSAPERSELSSDINEQL 199
>gi|224827041|ref|ZP_03700138.1| ribosomal protein S4 [Pseudogulbenkiania ferrooxidans 2002]
gi|347538214|ref|YP_004845638.1| 30S ribosomal protein S4 [Pseudogulbenkiania sp. NH8B]
gi|224600707|gb|EEG06893.1| ribosomal protein S4 [Pseudogulbenkiania ferrooxidans 2002]
gi|345641391|dbj|BAK75224.1| ribosomal protein S4 [Pseudogulbenkiania sp. NH8B]
Length = 206
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 161/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARR+LDSKCKLD PGQHG SR SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRALDSKCKLDSIPGQHG-ARKSRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR YF E +RLKG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRNYFAEASRLKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++K GD++++REKAKKQ RI L L+E SW++VD KKME
Sbjct: 120 HKAIVVNGQVVNIPSFQVKAGDVVAIREKAKKQARIVEGLALAEQGGFPSWVSVDPKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P RSE A DIN+ L
Sbjct: 180 GVFKSAPERSELAGDINEQL 199
>gi|113869406|ref|YP_727895.1| 30S ribosomal protein S4 [Ralstonia eutropha H16]
gi|123032616|sp|Q0K644.1|RS4_RALEH RecName: Full=30S ribosomal protein S4
gi|113528182|emb|CAJ94527.1| SSU ribosomal protein S4 [Ralstonia eutropha H16]
Length = 207
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++RE++KKQ RIA +L L+E S +W+ VD+KK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKSGDVVTIREQSKKQVRIAEALSLAEQSGFPTWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>gi|145588266|ref|YP_001154863.1| 30S ribosomal protein S4 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|456062412|ref|YP_007501382.1| ribosomal protein S4 [beta proteobacterium CB]
gi|189045391|sp|A4SUY5.1|RS4_POLSQ RecName: Full=30S ribosomal protein S4
gi|145046672|gb|ABP33299.1| SSU ribosomal protein S4P [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|455439709|gb|AGG32647.1| ribosomal protein S4 [beta proteobacterium CB]
Length = 207
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR+L KCKLD +PGQHGR SGSRTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCKLDTKPGQHGRTSGSRTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A L+N VNI S ++KPGD++++REKAKKQ RI SL L +W++VDA K+E
Sbjct: 121 HCAILLNGSPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDAAKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + + +IN+ L
Sbjct: 181 GTFKQVPDREDISGEINESL 200
>gi|350545193|ref|ZP_08914697.1| SSU ribosomal protein S4p (S9e) [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526995|emb|CCD39052.1| SSU ribosomal protein S4p (S9e) [Candidatus Burkholderia kirkii
UZHbot1]
Length = 207
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RRE DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRRESTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGPTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++ NI S ++K GD++SVRE+++KQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSIMVNGQVANIPSLQVKSGDVVSVREQSRKQARIVEALSLAEQGGMPSWVPVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ A DIN+ L
Sbjct: 181 GTFKSMPERSDIAGDINESL 200
>gi|444357356|ref|ZP_21158899.1| ribosomal protein S4 [Burkholderia cenocepacia BC7]
gi|443606465|gb|ELT74245.1| ribosomal protein S4 [Burkholderia cenocepacia BC7]
Length = 207
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+ SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAVQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>gi|115350347|ref|YP_772186.1| 30S ribosomal protein S4 [Burkholderia ambifaria AMMD]
gi|115280335|gb|ABI85852.1| SSU ribosomal protein S4P [Burkholderia ambifaria AMMD]
Length = 213
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 7 VARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 66
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 67 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 126
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GDI+++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 127 HKSITVNGVVANVPSQQVKAGDIVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 186
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 187 GTFKQMPERADIAGDINESL 206
>gi|33594506|ref|NP_882150.1| 30S ribosomal protein S4 [Bordetella pertussis Tohama I]
gi|33594777|ref|NP_882420.1| 30S ribosomal protein S4 [Bordetella parapertussis 12822]
gi|33599049|ref|NP_886609.1| 30S ribosomal protein S4 [Bordetella bronchiseptica RB50]
gi|384205803|ref|YP_005591542.1| 30S ribosomal protein S4 [Bordetella pertussis CS]
gi|408416770|ref|YP_006627477.1| 30S ribosomal protein S4 [Bordetella pertussis 18323]
gi|410417870|ref|YP_006898319.1| 30S ribosomal protein S4 [Bordetella bronchiseptica MO149]
gi|410470870|ref|YP_006894151.1| 30S ribosomal protein S4 [Bordetella parapertussis Bpp5]
gi|412340642|ref|YP_006969397.1| 30S ribosomal protein S4 [Bordetella bronchiseptica 253]
gi|427812309|ref|ZP_18979373.1| 30S ribosomal protein S4 [Bordetella bronchiseptica 1289]
gi|427817359|ref|ZP_18984422.1| 30S ribosomal protein S4 [Bordetella bronchiseptica D445]
gi|427823096|ref|ZP_18990158.1| 30S ribosomal protein S4 [Bordetella bronchiseptica Bbr77]
gi|61236218|sp|P0A4C5.1|RS4_BORPE RecName: Full=30S ribosomal protein S4
gi|61236221|sp|P0A4C6.1|RS4_BORBR RecName: Full=30S ribosomal protein S4
gi|61236225|sp|P0A4C7.1|RS4_BORPA RecName: Full=30S ribosomal protein S4
gi|33564582|emb|CAE43898.1| 30S ribosomal protein S4 [Bordetella pertussis Tohama I]
gi|33564853|emb|CAE39797.1| 30S ribosomal protein S4 [Bordetella parapertussis]
gi|33575095|emb|CAE30558.1| 30S ribosomal protein S4 [Bordetella bronchiseptica RB50]
gi|332383917|gb|AEE68764.1| 30S ribosomal protein S4 [Bordetella pertussis CS]
gi|401778940|emb|CCJ64409.1| 30S ribosomal protein S4 [Bordetella pertussis 18323]
gi|408440980|emb|CCJ47389.1| 30S ribosomal protein S4 [Bordetella parapertussis Bpp5]
gi|408445165|emb|CCJ56813.1| 30S ribosomal protein S4 [Bordetella bronchiseptica MO149]
gi|408770476|emb|CCJ55270.1| 30S ribosomal protein S4 [Bordetella bronchiseptica 253]
gi|410563309|emb|CCN20843.1| 30S ribosomal protein S4 [Bordetella bronchiseptica 1289]
gi|410568359|emb|CCN16393.1| 30S ribosomal protein S4 [Bordetella bronchiseptica D445]
gi|410588361|emb|CCN03418.1| 30S ribosomal protein S4 [Bordetella bronchiseptica Bbr77]
Length = 207
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF+E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+IS+REKAKKQ RI SL+L+ W+ VDA KM
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLAASIGLPQWVEVDASKMT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A D+N+ +
Sbjct: 181 GTFKSAPDRADVARDVNESM 200
>gi|161523454|ref|YP_001578466.1| 30S ribosomal protein S4 [Burkholderia multivorans ATCC 17616]
gi|189351773|ref|YP_001947401.1| 30S ribosomal protein S4 [Burkholderia multivorans ATCC 17616]
gi|221201590|ref|ZP_03574628.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2M]
gi|221207335|ref|ZP_03580345.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2]
gi|221213473|ref|ZP_03586448.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD1]
gi|421471429|ref|ZP_15919715.1| ribosomal protein S4 [Burkholderia multivorans ATCC BAA-247]
gi|421479176|ref|ZP_15926891.1| ribosomal protein S4 [Burkholderia multivorans CF2]
gi|226697816|sp|A9ADL8.1|RS4_BURM1 RecName: Full=30S ribosomal protein S4
gi|160340883|gb|ABX13969.1| ribosomal protein S4 [Burkholderia multivorans ATCC 17616]
gi|189335795|dbj|BAG44865.1| small subunit ribosomal protein S4 [Burkholderia multivorans ATCC
17616]
gi|221166925|gb|EED99396.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD1]
gi|221172923|gb|EEE05360.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2]
gi|221178406|gb|EEE10815.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2M]
gi|400223457|gb|EJO53754.1| ribosomal protein S4 [Burkholderia multivorans CF2]
gi|400225460|gb|EJO55623.1| ribosomal protein S4 [Burkholderia multivorans ATCC BAA-247]
Length = 207
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD+I++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGIVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ DIN+ L
Sbjct: 181 GTFKQVPERADIGGDINESL 200
>gi|134294468|ref|YP_001118203.1| 30S ribosomal protein S4 [Burkholderia vietnamiensis G4]
gi|134137625|gb|ABO53368.1| SSU ribosomal protein S4P [Burkholderia vietnamiensis G4]
Length = 213
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 7 VARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 66
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 67 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 126
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD+I++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 127 HKSITVNGVVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDAKKFE 186
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 187 GTFKQMPERADIAGDINESL 206
>gi|390576172|ref|ZP_10256245.1| 30S ribosomal protein S4 [Burkholderia terrae BS001]
gi|420246437|ref|ZP_14749879.1| ribosomal protein S4, bacterial/organelle type [Burkholderia sp.
BT03]
gi|389931853|gb|EIM93908.1| 30S ribosomal protein S4 [Burkholderia terrae BS001]
gi|398074540|gb|EJL65681.1| ribosomal protein S4, bacterial/organelle type [Burkholderia sp.
BT03]
Length = 207
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + NI S ++K GD+++VRE++KKQ RI +L L+E W+ VD+KK E
Sbjct: 121 HKSITVNGVVANIPSLQVKAGDVVAVREQSKKQARILEALSLAEQGGLPQWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ A DIN+ L
Sbjct: 181 GTFKQMPERSDIAGDINESL 200
>gi|359801010|ref|ZP_09303532.1| 30S ribosomal protein S4 [Achromobacter arsenitoxydans SY8]
gi|359361012|gb|EHK62787.1| 30S ribosomal protein S4 [Achromobacter arsenitoxydans SY8]
Length = 207
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+ISVREKAKKQ RI SL+L+ W+ VD K+
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVISVREKAKKQGRIKESLDLATSIGIPQWVEVDTTKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A DIN+ +
Sbjct: 181 GTFKSAPDRADVARDINESM 200
>gi|293602599|ref|ZP_06685042.1| 30S ribosomal protein S4 [Achromobacter piechaudii ATCC 43553]
gi|292818971|gb|EFF78009.1| 30S ribosomal protein S4 [Achromobacter piechaudii ATCC 43553]
Length = 207
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD++S+REKAKKQ RI SL+L+ W+ VDA K+
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVVSIREKAKKQGRIKESLDLATSIGIPQWVEVDATKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A DIN+ +
Sbjct: 181 GTFKSVPDRADVARDINESM 200
>gi|422323463|ref|ZP_16404502.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans C54]
gi|423014741|ref|ZP_17005462.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans AXX-A]
gi|317401573|gb|EFV82202.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans C54]
gi|338782357|gb|EGP46732.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans AXX-A]
Length = 207
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+IS+REKAKKQ RI SL+L+ W+ VD K+
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIKESLDLATSIGIPQWVEVDTTKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A DIN+ +
Sbjct: 181 GTFKSAPDRADVARDINESM 200
>gi|121603259|ref|YP_980588.1| 30S ribosomal protein S4 [Polaromonas naphthalenivorans CJ2]
gi|152112243|sp|A1VJ39.1|RS4_POLNA RecName: Full=30S ribosomal protein S4
gi|120592228|gb|ABM35667.1| SSU ribosomal protein S4P [Polaromonas naphthalenivorans CJ2]
Length = 207
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSKPGQHGRTSGTRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R +G TG +L +LESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRRGNTGANLLSVLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+I+VR+K+KKQTRIA +LEL++ +W+ V+A K E
Sbjct: 121 HKAMTVNGQSVNIPSYMVKAGDVIAVRDKSKKQTRIAEALELAKQVGLPAWVDVNADKGE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKVPDRDEFAADINESL 200
>gi|311109577|ref|YP_003982430.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans A8]
gi|310764266|gb|ADP19715.1| ribosomal protein S4 [Achromobacter xylosoxidans A8]
Length = 207
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD++S+REKAKKQ RI SL+L+ W+ VD K+
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVVSIREKAKKQGRIKESLDLATSIGIPQWVEVDTTKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A DIN+ +
Sbjct: 181 GTFKSAPDRADVARDINESM 200
>gi|326315414|ref|YP_004233086.1| 30S ribosomal protein S4 [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323372250|gb|ADX44519.1| ribosomal protein S4 [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 207
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +KPGDI++VREK+KKQ RI +L+L++ +W+ V+A K+E
Sbjct: 121 HKAITVNGQSVNIASYLVKPGDIVAVREKSKKQARIVEALQLAQQVGIPAWVEVNADKVE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKAPDRDEFGADINESL 200
>gi|120609325|ref|YP_969003.1| 30S ribosomal protein S4 [Acidovorax citrulli AAC00-1]
gi|152060922|sp|A1TJU1.1|RS4_ACIAC RecName: Full=30S ribosomal protein S4
gi|120587789|gb|ABM31229.1| SSU ribosomal protein S4P [Acidovorax citrulli AAC00-1]
Length = 207
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +KPGD+++VREK+KKQ RI +L+L++ +W+ V+A K+E
Sbjct: 121 HKAITVNGQSVNIASYLVKPGDVVAVREKSKKQARIVEALQLAQQVGIPAWVEVNADKVE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKAPDRDEFGADINESL 200
>gi|393760692|ref|ZP_10349499.1| 30S ribosomal protein S4 [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393161190|gb|EJC61257.1| 30S ribosomal protein S4 [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 207
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKL+ RPGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLESRPGQHGRTSGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+Y++E R +G TGE +++LLESR DNVVYRMGF STR+EARQL++
Sbjct: 61 KLKRMYGVLEKQFRKYYVEADRRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVN 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN +IAS IK GD+++VREKAK Q+RI SLEL+ W+ VDA K+
Sbjct: 121 HRAIEVNGHTADIASMLIKAGDVVAVREKAKSQSRIKESLELATGIGLPQWVEVDAAKLS 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ A D+N+ L
Sbjct: 181 GVFKQVPDRADVAQDVNESL 200
>gi|383756214|ref|YP_005435199.1| 30S ribosomal protein S4 RpsD [Rubrivivax gelatinosus IL144]
gi|381376883|dbj|BAL93700.1| 30S ribosomal protein S4 RpsD [Rubrivivax gelatinosus IL144]
Length = 207
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SGSRTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIGDKAKFDSKPGQHGRTSGSRTSDYGVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEAERRKGNTGSTLLALLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI SY +K GD+++VREK+K Q R+ ++L+L++ W+ VDA KME
Sbjct: 121 HKAITVNGQVVNIPSYMVKAGDVVAVREKSKNQLRVQDALKLAQSIGQCEWVQVDATKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R +F +I + L
Sbjct: 181 GVFKKVPDRDQFGAEIKEAL 200
>gi|452126807|ref|ZP_21939390.1| 30S ribosomal protein S4 [Bordetella holmesii F627]
gi|452130180|ref|ZP_21942753.1| 30S ribosomal protein S4 [Bordetella holmesii H558]
gi|451921902|gb|EMD72047.1| 30S ribosomal protein S4 [Bordetella holmesii F627]
gi|451923040|gb|EMD73184.1| 30S ribosomal protein S4 [Bordetella holmesii H558]
Length = 207
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF+E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+I+VRE AKKQ RI SL+L+ W+ VD KM
Sbjct: 121 HRAIELNGHTADIASILVKAGDVITVREAAKKQARIRESLDLASSIGIPQWVEVDTSKMA 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A D+N+ +
Sbjct: 181 GTFKSAPDRADVARDVNESM 200
>gi|421486511|ref|ZP_15934055.1| 30S ribosomal protein S4 [Achromobacter piechaudii HLE]
gi|400195215|gb|EJO28207.1| 30S ribosomal protein S4 [Achromobacter piechaudii HLE]
Length = 207
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD++S+REKAKKQ RI SL+L+ W+ VD+ K+
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVVSIREKAKKQGRIKESLDLATSIGIPQWVEVDSTKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A DIN+ +
Sbjct: 181 GTFKSVPDRADVARDINESM 200
>gi|163859246|ref|YP_001633544.1| 30S ribosomal protein S4 [Bordetella petrii DSM 12804]
gi|226697810|sp|A9IHR7.1|RS4_BORPD RecName: Full=30S ribosomal protein S4
gi|163262974|emb|CAP45277.1| 30S ribosomal protein S4 [Bordetella petrii]
Length = 207
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN +IAS +K GD+I+VREKAKKQ RI +L+L+ W+ VD KM
Sbjct: 121 HRAIEVNGHTADIASLIVKAGDVITVREKAKKQGRIREALDLASSIGIPQWVEVDTNKMA 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A DIN+ +
Sbjct: 181 GTFKSMPDRADVARDINESM 200
>gi|332524579|ref|ZP_08400783.1| 30S ribosomal protein S4 [Rubrivivax benzoatilyticus JA2]
gi|332107892|gb|EGJ09116.1| 30S ribosomal protein S4 [Rubrivivax benzoatilyticus JA2]
Length = 207
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SGSRTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIGDKAKFDSKPGQHGRTSGSRTSDYGVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TG +L LLESR DNVVYRMGF STR+E+RQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEAERRKGNTGSNLLALLESRLDNVVYRMGFGSTRAESRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI SY +K GD+++VREKAK Q R+ ++L+L++ W+ VDA KME
Sbjct: 121 HKAITVNGQVVNIPSYMVKAGDVVAVREKAKNQLRVQDALKLAQTIGQCEWVQVDATKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R +F +I + L
Sbjct: 181 GVFKKVPDRDQFGAEIKEAL 200
>gi|399017014|ref|ZP_10719215.1| DNA-directed RNA polymerase, alpha subunit [Herbaspirillum sp.
CF444]
gi|398104344|gb|EJL94486.1| DNA-directed RNA polymerase, alpha subunit [Herbaspirillum sp.
CF444]
Length = 325
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 163/306 (53%), Positives = 189/306 (61%), Gaps = 76/306 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRII+V+ LG+ HAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +
Sbjct: 3 NSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLK---------------------GVIL----------KLYN 285
HEYSSL+GVQED++DI+LNLK GV+L +L N
Sbjct: 63 HEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVELIN 122
Query: 286 RDYAILNLKKFGKC---------------------------------------------V 300
D+ I NL GK
Sbjct: 123 PDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVSYA 182
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V ++ +E +D++ + N + EEAIRQSARVLVDQLNVFAALE T E S
Sbjct: 183 VESARVEQRTDLDKLVINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAPSR 242
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
+VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE
Sbjct: 243 APQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEIKE 302
Query: 421 ILASRG 426
+LASRG
Sbjct: 303 VLASRG 308
>gi|451823418|ref|YP_007459692.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776218|gb|AGF47259.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 207
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRS DSKCK + +PGQHGR SGSRTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSFDSKCKAESKPGQHGRTSGSRTSDYGSQMREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYGILEKQFRRYF E R +G TGE ++KLLESR DNVVYRMGF STRSE+RQLIS
Sbjct: 61 KLKRMYGILEKQFRRYFEESERRRGNTGETLIKLLESRLDNVVYRMGFGSTRSESRQLIS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR+ VN ++V+IAS +K GD++SVREK+K Q RI S++L+E W+ VD++K+
Sbjct: 121 HRSIEVNGRVVDIASLSVKVGDVVSVREKSKNQIRIKESIKLAESIGIPQWVHVDSEKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R + A DIN+ +
Sbjct: 181 GTFKSYPDRVDVARDINESM 200
>gi|424778052|ref|ZP_18205006.1| 30S ribosomal protein S4 [Alcaligenes sp. HPC1271]
gi|422887112|gb|EKU29521.1| 30S ribosomal protein S4 [Alcaligenes sp. HPC1271]
Length = 207
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKL+ RPGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLESRPGQHGRTSGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+Y++E R +G TGE +++LLESR DNVVYRMGF STR+EARQL++
Sbjct: 61 KLKRMYGVLEKQFRKYYVEADRRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVN 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN +IAS IK GD++SVREKAK Q RI SL+L+ W+ VD K+
Sbjct: 121 HRAIEVNGHTADIASMLIKAGDVVSVREKAKSQGRIKESLDLATGIGLPQWVEVDTAKLS 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ A DIN+ L
Sbjct: 181 GVFKQAPDRADVAQDINESL 200
>gi|187476573|ref|YP_784597.1| 30S ribosomal protein S4 [Bordetella avium 197N]
gi|123515214|sp|Q2L242.1|RS4_BORA1 RecName: Full=30S ribosomal protein S4
gi|115421159|emb|CAJ47643.1| 30S ribosomal protein S4 [Bordetella avium 197N]
Length = 207
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+I+VRE AKKQ RI SL+L+ W+ VD+ KM
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVITVREGAKKQARIRESLDLAASIGIPQWVEVDSNKMT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A D+N+ +
Sbjct: 181 GTFKSPPDRADVARDVNESM 200
>gi|171462904|ref|YP_001797017.1| 30S ribosomal protein S4 [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|226699102|sp|B1XSS6.1|RS4_POLNS RecName: Full=30S ribosomal protein S4
gi|171192442|gb|ACB43403.1| ribosomal protein S4 [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 207
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR+L KC+LD +PGQ GR SGSRTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCRLDNKPGQDGRTSGSRTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A L+N VNI S ++KPGD++++REKAKKQ RI SL L +W++VD K+E
Sbjct: 121 HCAILLNGNPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDVAKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + + +IN+ L
Sbjct: 181 GTFKQVPDREDISGEINESL 200
>gi|239818004|ref|YP_002946914.1| 30S ribosomal protein S4 [Variovorax paradoxus S110]
gi|319796381|ref|YP_004158021.1| 30S ribosomal protein S4 [Variovorax paradoxus EPS]
gi|259495303|sp|C5CQ76.1|RS4_VARPS RecName: Full=30S ribosomal protein S4
gi|239804581|gb|ACS21648.1| ribosomal protein S4 [Variovorax paradoxus S110]
gi|315598844|gb|ADU39910.1| ribosomal protein S4 [Variovorax paradoxus EPS]
Length = 207
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIQDKAKFDSKPGQHGRTSGQRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R +G TG +L +LESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRRGNTGANLLFILESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+I+VR+K+KKQTRIA +L+L++ +W+ V+A K E
Sbjct: 121 HKAITVNGQSVNIPSYLVKTGDVIAVRDKSKKQTRIAEALQLAQQVGIPAWVEVNADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKVPDRDEFAADINESL 200
>gi|124268602|ref|YP_001022606.1| 30S ribosomal protein S4 [Methylibium petroleiphilum PM1]
gi|152112230|sp|A2SLD2.1|RS4_METPP RecName: Full=30S ribosomal protein S4
gi|124261377|gb|ABM96371.1| SSU ribosomal protein S4P [Methylibium petroleiphilum PM1]
Length = 207
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR++ K K + +PGQHGR SGSRTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRAIGDKSKFETKPGQHGRTSGSRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEAERRKGNTGANLLLLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ VN ++VNIASY +K GD+++VREKAKKQ R+ SL+L+E +W+ VDA K+E
Sbjct: 121 HKGITVNGEVVNIASYLVKTGDVVAVREKAKKQLRVTESLKLAESMGLPAWVQVDATKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EF +DIN+ L
Sbjct: 181 GVFKKSPDRDEFGSDINESL 200
>gi|89902965|ref|YP_525436.1| 30S ribosomal protein S4 [Rhodoferax ferrireducens T118]
gi|122478015|sp|Q21QP8.1|RS4_RHOFD RecName: Full=30S ribosomal protein S4
gi|89347702|gb|ABD71905.1| SSU ribosomal protein S4P [Rhodoferax ferrireducens T118]
Length = 207
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIGDKAKFDSKPGQHGRTSGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY +K GD+I+VR+K+KKQ RI +L+L++ +W+ ++A+K E
Sbjct: 121 HKAMTVNGKSVNIPSYMVKAGDMIAVRDKSKKQNRIVEALQLAQQVGMPAWVEINAEKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+R +FA D+N+ L
Sbjct: 181 GTFKAVPDRDQFAADVNESL 200
>gi|222109617|ref|YP_002551881.1| 30S ribosomal protein S4 [Acidovorax ebreus TPSY]
gi|254764586|sp|B9MBW1.1|RS4_DIAST RecName: Full=30S ribosomal protein S4
gi|221729061|gb|ACM31881.1| ribosomal protein S4 [Acidovorax ebreus TPSY]
Length = 207
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF RLKG TG +L LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +K GD+++VREK+KKQ RI +L+L++ W+ V+A K+E
Sbjct: 121 HKAITVNGQSVNIASYLVKAGDVVAVREKSKKQARIVEALQLAQQVGMPVWVEVNADKVE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKVPDRDEFGADINESL 200
>gi|348618229|ref|ZP_08884759.1| 30S ribosomal subunit protein S4 [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816476|emb|CCD29462.1| 30S ribosomal subunit protein S4 [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 207
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR L KC+LD +PG HGR SGSR+SDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRPLADKCRLDSKPGPHGRASGSRSSDYGSQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF R +G TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRLYGLLERQFRRYFAHAKRRRGNTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA LVN +I NIAS ++KPGD +++ +KAK+QTRI ++ L+E W+TVDAK++E
Sbjct: 121 HRAILVNGRIANIASLQVKPGDTVTIHDKAKQQTRIQEAVSLAEQMNFPGWVTVDAKQLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P R E A DIN+ L
Sbjct: 181 GIFKQPPQRDEIAGDINESL 200
>gi|429463049|ref|YP_007184512.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811830|ref|YP_007448285.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338563|gb|AFZ82986.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776988|gb|AGF47987.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 207
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRS DSKCK + +PGQHGRISG+R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSFDSKCKSESKPGQHGRISGARISDYGSQMREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E RL+G TGE ++KLLESR DNVVYRMGF STR+E+RQL++
Sbjct: 61 KLKRMYGVLEKQFRKYFKESERLRGNTGETLIKLLESRLDNVVYRMGFGSTRAESRQLVN 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN K+V+IAS +K GD ISVR+++K Q RI S++L+E W+ VD +K+
Sbjct: 121 HRAIEVNGKVVDIASLSVKAGDTISVRDRSKNQNRIRESIKLAESIGIPQWVDVDIEKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FKS P+R++ A DIN+ +
Sbjct: 181 GIFKSSPDRADVARDINESM 200
>gi|121592837|ref|YP_984733.1| 30S ribosomal protein S4 [Acidovorax sp. JS42]
gi|152060926|sp|A1W332.1|RS4_ACISJ RecName: Full=30S ribosomal protein S4
gi|120604917|gb|ABM40657.1| SSU ribosomal protein S4P [Acidovorax sp. JS42]
Length = 207
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF RLKG TG +L LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +K GD+++VR+K+KKQ RI +L+L++ W+ V+A K+E
Sbjct: 121 HKAITVNGQSVNIASYLVKAGDVVAVRDKSKKQARIVEALQLAQQVGMPVWVEVNADKVE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKVPDRDEFGADINESL 200
>gi|91786410|ref|YP_547362.1| 30S ribosomal protein S4 [Polaromonas sp. JS666]
gi|123060350|sp|Q12G78.1|RS4_POLSJ RecName: Full=30S ribosomal protein S4
gi|91695635|gb|ABE42464.1| SSU ribosomal protein S4P [Polaromonas sp. JS666]
Length = 207
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR++ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRAISDKAKFDSKPGQHGRTSGTRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R KG TG +L +LESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRKGNTGANLLFILESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN VNI SY +K GD+I+VR+K+KKQTR+ +LEL++ +W+ V+A K E
Sbjct: 121 HKAITVNGNSVNIPSYMVKTGDVIAVRDKSKKQTRVTEALELAKQVGLPAWVDVNADKGE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EFA D+N+ L
Sbjct: 181 GVFKKVPDRDEFAADVNESL 200
>gi|226939211|ref|YP_002794282.1| 30S ribosomal protein S4 [Laribacter hongkongensis HLHK9]
gi|254764593|sp|C1DAU2.1|RS4_LARHH RecName: Full=30S ribosomal protein S4
gi|226714135|gb|ACO73273.1| RpsD [Laribacter hongkongensis HLHK9]
Length = 206
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DLFLKSARRS+DSKCKLD RPGQHG R SDYG REKQ
Sbjct: 1 MARYTGPKCKLARREGTDLFLKSARRSIDSKCKLDSRPGQHG-AKQPRLSDYGIHLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR+YF E R KG TGE +L++LESR DNVVYRMG+ STR+E+RQL+S
Sbjct: 60 KIRRIYGVLERQFRKYFAEAERRKGSTGENLLQILESRLDNVVYRMGYGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI SY++K GD++SVREK+KKQ RIA SL L+E W++VD KKME
Sbjct: 120 HKAIVVNGEVVNIPSYQVKAGDVVSVREKSKKQVRIAESLALAEQIGFPGWVSVDPKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P RSE ++DIN+ L
Sbjct: 180 GTFKNAPERSELSSDINEQL 199
>gi|221064828|ref|ZP_03540933.1| ribosomal protein S4 [Comamonas testosteroni KF-1]
gi|220709851|gb|EED65219.1| ribosomal protein S4 [Comamonas testosteroni KF-1]
Length = 207
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 152/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKAKFDTKPGQHGRTSGQRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF R +G TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADRKRGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD++++REK+KKQ R+ +L+L+ +W+ V A K E
Sbjct: 121 HKAITVNGQSVNIPSYSVKEGDVVALREKSKKQARVVEALQLAAQVGFPAWVEVSADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKSPDRDEFAADINESL 200
>gi|83648828|ref|YP_437263.1| 30S ribosomal protein S4 [Hahella chejuensis KCTC 2396]
gi|123530606|sp|Q2S936.1|RS4_HAHCH RecName: Full=30S ribosomal protein S4
gi|83636871|gb|ABC32838.1| ribosomal protein S4 [Hahella chejuensis KCTC 2396]
Length = 206
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKC ++ PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCNMETAPGQHGQRRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARIKGATGENLLQLLERRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI SY++KPGD++S+REK+K Q RI SLEL+ WI VDA KM
Sbjct: 120 HKAILVNGKAVNIPSYQVKPGDVVSIREKSKNQLRIKGSLELAAQRATLEWIEVDAAKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R++ + DIN+ L
Sbjct: 180 GTFKSVPERTDLSPDINENL 199
>gi|319764615|ref|YP_004128552.1| 30S ribosomal protein S4 [Alicycliphilus denitrificans BC]
gi|330826872|ref|YP_004390175.1| 30S ribosomal protein S4 [Alicycliphilus denitrificans K601]
gi|317119176|gb|ADV01665.1| ribosomal protein S4 [Alicycliphilus denitrificans BC]
gi|329312244|gb|AEB86659.1| ribosomal protein S4 [Alicycliphilus denitrificans K601]
Length = 224
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 18 VARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 77
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 78 KVKRMYGVLEKQFRRYFEAAERRKGNTGANLLALLESRLDNVVYRMGFGSTRAEARQLVS 137
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +K GD+++VREK+KKQ RI +L+L++ +W+ V+A K+E
Sbjct: 138 HKAITVNGQSVNIASYLVKTGDVVAVREKSKKQARIVEALQLAQQVGMPAWVEVNADKVE 197
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R +F DIN+ L
Sbjct: 198 GTFKQVPDRDQFGADINESL 217
>gi|378821702|ref|ZP_09844571.1| ribosomal protein S4 [Sutterella parvirubra YIT 11816]
gi|378599478|gb|EHY32497.1| ribosomal protein S4 [Sutterella parvirubra YIT 11816]
Length = 208
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/201 (66%), Positives = 160/201 (79%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARY+GPK KL RREGIDL LKSARRS +SK K + +PGQHG+ISG+R SDYG Q RE
Sbjct: 1 MARYLGPKLKLSRREGIDLNLKSARRSFESKVKDVGSKPGQHGKISGARMSDYGNQMREA 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKRMYG+LE+QFRRYF E ARL+G TGE + +LLESR DNVVYRMGF STR+E+RQL+
Sbjct: 61 QKVKRMYGVLERQFRRYFAEAARLRGNTGEKLFQLLESRLDNVVYRMGFGSTRAESRQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH A LVN K VNI SY +K GD+ISVREKA+KQ RIA SLEL++ + +W+ V+AKK
Sbjct: 121 SHGAILVNGKKVNIPSYAVKAGDVISVREKAQKQVRIAESLELAQQNGFPAWVEVEAKKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P R E A +IN+ L
Sbjct: 181 EGTFKNVPARDEVAPEINEAL 201
>gi|398804840|ref|ZP_10563830.1| ribosomal protein S4, bacterial/organelle type [Polaromonas sp.
CF318]
gi|398093231|gb|EJL83620.1| ribosomal protein S4, bacterial/organelle type [Polaromonas sp.
CF318]
Length = 207
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR++ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRAISDKAKFDSKPGQHGRTSGTRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R KG TG +L +LE R DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRKGNTGANLLFILECRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN VNI SY +K GD+I+VREK+KKQTRI +LEL++ +W+ V+A K E
Sbjct: 121 HKAITVNGGTVNIPSYMVKTGDVIAVREKSKKQTRITEALELAKQVGLPAWVDVNADKGE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKVPDRDEFAADINESL 200
>gi|365096213|ref|ZP_09330925.1| 30S ribosomal protein S4 [Acidovorax sp. NO-1]
gi|363413899|gb|EHL21085.1| 30S ribosomal protein S4 [Acidovorax sp. NO-1]
Length = 207
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAAEGKKGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNIASY +K GD+++VREK+KKQ R+ +L+L+ +W+ V+A+K E
Sbjct: 121 HKAITVNGKSVNIASYLVKTGDVVAVREKSKKQNRVVEALQLAAQVGMPAWVEVNAEKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+R EF DIN+ L
Sbjct: 181 GIFKKVPDRDEFGADINESL 200
>gi|398808340|ref|ZP_10567205.1| ribosomal protein S4, bacterial/organelle type [Variovorax sp.
CF313]
gi|398087857|gb|EJL78435.1| ribosomal protein S4, bacterial/organelle type [Variovorax sp.
CF313]
Length = 207
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIQDKAKFDSKPGQHGRTSGQRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R +G TG +L +LESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRRGNTGANLLFILESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+I+VR+K+KKQ RI +L+L++ +W+ V+A K E
Sbjct: 121 HKAITVNGQSVNIPSYLVKTGDVIAVRDKSKKQNRIVEALQLAQQVGIPAWVDVNADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKVPDRDEFAADINESL 200
>gi|348590786|ref|YP_004875248.1| 30S ribosomal protein S4p [Taylorella asinigenitalis MCE3]
gi|347974690|gb|AEP37225.1| SSU ribosomal protein S4p (S9e) [Taylorella asinigenitalis MCE3]
gi|399116179|emb|CCG18984.1| 30S ribosomal protein S4 [Taylorella asinigenitalis 14/45]
Length = 207
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREGIDLFLKSARR LDSKCK + +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGIDLFLKSARRPLDSKCKFESKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A +N K +I S +K GD++SVREK+K Q RI ++L+L+E T W++VD KK E
Sbjct: 121 HGAIELNGKKADIPSIIVKSGDVVSVREKSKGQARIKSALDLAESLTFPEWVSVDTKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQVPDRADVARDINESL 200
>gi|351732599|ref|ZP_08950290.1| 30S ribosomal protein S4 [Acidovorax radicis N35]
Length = 207
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADGKKGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNIASY +K GD+++VREK+KKQ R+ +L+L+ +W+ V+A+K E
Sbjct: 121 HKAITVNGKSVNIASYLVKTGDVVAVREKSKKQNRVVEALQLAAQVGMPAWVEVNAEKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+R EF DIN+ L
Sbjct: 181 GIFKKVPDRDEFGADINESL 200
>gi|407941057|ref|YP_006856698.1| 30S ribosomal protein S4 [Acidovorax sp. KKS102]
gi|407898851|gb|AFU48060.1| 30S ribosomal protein S4 [Acidovorax sp. KKS102]
Length = 207
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 154/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADGKKGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNIASY +K GD+++VREK+KKQ R+ +L+L+ +W+ V+A K E
Sbjct: 121 HKAITVNGKSVNIASYLVKVGDVVAVREKSKKQARVVEALQLAAQVGMPAWVEVNADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EF DIN+ L
Sbjct: 181 GVFKKVPDRDEFGADINESL 200
>gi|296137040|ref|YP_003644282.1| 30S ribosomal protein S4 [Thiomonas intermedia K12]
gi|410694792|ref|YP_003625414.1| 30S ribosomal subunit protein S4 [Thiomonas sp. 3As]
gi|294341217|emb|CAZ89618.1| 30S ribosomal subunit protein S4 [Thiomonas sp. 3As]
gi|295797162|gb|ADG31952.1| ribosomal protein S4 [Thiomonas intermedia K12]
Length = 207
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MAR+IG K KL RREG DLFLKSARR +DSK KL+ +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARFIGAKGKLTRREGADLFLKSARRGIDSKVKLETKPGQHGRTSGARTSDYGKQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRY+ E R G TG +L LLESR DNVVYRMG+ STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYYEEAQRRSGNTGTNLLMLLESRLDNVVYRMGYGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR+ VN K++NI S +K GD+++VREK++ Q RI S++L+E + +W+ VD KME
Sbjct: 121 HRSITVNGKVLNIPSALVKTGDVVAVREKSRNQARIQESVKLAESNGFPAWVQVDGAKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EF NDIN+ L
Sbjct: 181 GVFKKAPDRDEFGNDINESL 200
>gi|264680561|ref|YP_003280471.1| 30S ribosomal protein S4 [Comamonas testosteroni CNB-2]
gi|299532875|ref|ZP_07046262.1| 30S ribosomal protein S4 [Comamonas testosteroni S44]
gi|418529070|ref|ZP_13095011.1| 30S ribosomal protein S4 [Comamonas testosteroni ATCC 11996]
gi|262211077|gb|ACY35175.1| ribosomal protein S4 [Comamonas testosteroni CNB-2]
gi|298719099|gb|EFI60069.1| 30S ribosomal protein S4 [Comamonas testosteroni S44]
gi|371454028|gb|EHN67039.1| 30S ribosomal protein S4 [Comamonas testosteroni ATCC 11996]
Length = 207
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 152/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKAKFDTKPGQHGRTSGQRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF R +G TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADRKRGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI S+ +K GD++++REK+KKQ R+ +L+L+ +W+ V A K E
Sbjct: 121 HKAITVNGQSVNIPSFSVKEGDVVALREKSKKQARVVEALQLAAQVGFPAWVEVSADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKSPDRDEFAADINESL 200
>gi|398833115|ref|ZP_10591255.1| DNA-directed RNA polymerase, alpha subunit [Herbaspirillum sp.
YR522]
gi|398222101|gb|EJN08489.1| DNA-directed RNA polymerase, alpha subunit [Herbaspirillum sp.
YR522]
Length = 325
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 186/306 (60%), Gaps = 76/306 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRII+V+ L HAKV+MEPFERGYG+TLGNALRRVLLS+M G APTEV I+G +
Sbjct: 3 NSLLKPRIIEVEALAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMTGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLK---------------------GVIL----------KLYN 285
HEYSSL+GVQED++DI+LNLK GV+L +L N
Sbjct: 63 HEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVELIN 122
Query: 286 RDYAILNLKKFGKC---------------------------------------------V 300
D+ I NL GK
Sbjct: 123 PDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVSYA 182
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V ++ +E +D++ + N + EEAIRQSARVLVDQLNVFAALE T E S
Sbjct: 183 VESARVEQRTDLDKLVINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAPSR 242
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
+VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE
Sbjct: 243 APQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEIKE 302
Query: 421 ILASRG 426
+LASRG
Sbjct: 303 VLASRG 308
>gi|332530055|ref|ZP_08406005.1| 30S ribosomal protein S4 [Hylemonella gracilis ATCC 19624]
gi|332040528|gb|EGI76904.1| 30S ribosomal protein S4 [Hylemonella gracilis ATCC 19624]
Length = 207
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGRISG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSKPGQHGRISGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF + ++ KG +G +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFEQASQRKGNSGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY ++ GD+I+VREK+KKQ R+ +L+L++ +W+ V+ K E
Sbjct: 121 HKAITVNGQAVNIPSYMVQAGDVIAVREKSKKQNRVVEALQLAQQVGFPAWVEVNVDKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF +DIN+ L
Sbjct: 181 GAFKKAPDRDEFGSDINESL 200
>gi|160896494|ref|YP_001562076.1| 30S ribosomal protein S4 [Delftia acidovorans SPH-1]
gi|333917068|ref|YP_004490800.1| 30S ribosomal protein S4 [Delftia sp. Cs1-4]
gi|226697834|sp|A9BRX4.1|RS4_DELAS RecName: Full=30S ribosomal protein S4
gi|160362078|gb|ABX33691.1| ribosomal protein S4 [Delftia acidovorans SPH-1]
gi|333747268|gb|AEF92445.1| ribosomal protein S4 [Delftia sp. Cs1-4]
Length = 207
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 151/200 (75%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSD+G Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKSKFDTKPGQHGRTSGQRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF + KG TG +L LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+++VREK+KKQ RI +L+L+ +W+ V A K E
Sbjct: 121 HKAITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKSPDRDEFGADINESL 200
>gi|395010705|ref|ZP_10394057.1| ribosomal protein S4, bacterial/organelle type [Acidovorax sp.
CF316]
gi|394311232|gb|EJE48608.1| ribosomal protein S4, bacterial/organelle type [Acidovorax sp.
CF316]
Length = 207
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 153/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ KCK D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKCKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILEKQFRRYF KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGILEKQFRRYFETADSRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A VN K VNI SY +K GD+++VREK+KKQ RI +L+L+ +W+ V+A K E
Sbjct: 121 HCAITVNGKPVNIPSYLVKVGDVVAVREKSKKQNRIVEALQLAAQVGIPAWVDVNADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EF DIN+ L
Sbjct: 181 GVFKKVPDRDEFGADINESL 200
>gi|350424472|ref|XP_003493807.1| PREDICTED: 30S ribosomal protein S4-like [Bombus impatiens]
Length = 206
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E ARLKG TGE +L LLESR DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEAARLKGNTGENLLTLLESRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNIASYK+ P D+ISVREKAKKQ R+ +LEL+E W+ VDA KME
Sbjct: 120 HKAVLVNGRVVNIASYKVSPEDVISVREKAKKQARVKAALELAEQREKPVWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRLPERSDLSADINEHL 199
>gi|437999659|ref|YP_007183392.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813283|ref|YP_007449736.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429338893|gb|AFZ83315.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779252|gb|AGF50132.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 207
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARR DSKCK + +PGQHGR SGSR SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRPFDSKCKSESKPGQHGRTSGSRISDYGLQMREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFRRYF E R KG TGEI+++LLESR DNVVYRMGF STR+EARQLIS
Sbjct: 61 KLKRMYGVLEKQFRRYFEESERRKGNTGEILIQLLESRLDNVVYRMGFGSTRAEARQLIS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN +IV+IAS +K GDIISVREK+K Q RI +++L+ W+ +D++K
Sbjct: 121 HRAIEVNGRIVDIASLSVKAGDIISVREKSKNQNRIKEAIKLAISIGIPQWLDLDSEKQM 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+RS+ A DIN+ +
Sbjct: 181 GTFKAVPDRSDVARDINESM 200
>gi|94500968|ref|ZP_01307493.1| ribosomal protein S4 [Bermanella marisrubri]
gi|94426908|gb|EAT11891.1| ribosomal protein S4 [Oceanobacter sp. RED65]
Length = 206
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKCK++ +PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCKVETKPGVHGAGRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR+KG TGE +LKLLE+R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRSYYKEAARVKGATGENLLKLLETRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY IK GD++S+REKAK+Q RI +LEL+ +WI VDAKKME
Sbjct: 120 HKAIAVNGQTVNIPSYNIKAGDVVSIREKAKEQLRIKGALELAAQRGDIAWIDVDAKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P RSE + +IN+ L
Sbjct: 180 GTFKAVPERSELSAEINEQL 199
>gi|238921420|ref|YP_002934935.1| 30S ribosomal protein S4, putative [Edwardsiella ictaluri 93-146]
gi|269140550|ref|YP_003297251.1| 30S ribosomal protein S4 [Edwardsiella tarda EIB202]
gi|294638030|ref|ZP_06716290.1| ribosomal protein S4 [Edwardsiella tarda ATCC 23685]
gi|387869022|ref|YP_005700491.1| 30S ribosomal protein S4 [Edwardsiella tarda FL6-60]
gi|451967553|ref|ZP_21920792.1| 30S ribosomal protein S4 [Edwardsiella tarda NBRC 105688]
gi|259495277|sp|C5BF28.1|RS4_EDWI9 RecName: Full=30S ribosomal protein S4
gi|238870989|gb|ACR70700.1| 30S ribosomal protein S4, putative [Edwardsiella ictaluri 93-146]
gi|267986211|gb|ACY86040.1| 30S ribosomal protein S4 [Edwardsiella tarda EIB202]
gi|291088822|gb|EFE21383.1| ribosomal protein S4 [Edwardsiella tarda ATCC 23685]
gi|304560335|gb|ADM42999.1| SSU ribosomal protein S4p (S9e) [Edwardsiella tarda FL6-60]
gi|451313652|dbj|GAC66154.1| 30S ribosomal protein S4 [Edwardsiella tarda NBRC 105688]
Length = 206
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK +P RS+ + DIN+ L
Sbjct: 180 GVFKRQPERSDLSADINEHL 199
>gi|301628935|ref|XP_002943604.1| PREDICTED: 30S ribosomal protein S4-like, partial [Xenopus
(Silurana) tropicalis]
Length = 212
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 154/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSDYG Q REKQ
Sbjct: 6 VARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGQRTSDYGLQLREKQ 65
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG++EKQFRRYF E R KG TG +L LLE R DN+VYRMGF STR+EARQL+S
Sbjct: 66 KVKRMYGVMEKQFRRYFAEADRRKGNTGANLLTLLECRLDNMVYRMGFGSTRAEARQLVS 125
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + VNI S+ +K GD++SVREK+KKQ R+ +L+L++ +W+ V A K E
Sbjct: 126 HKAILVNGQAVNIPSFLVKVGDVVSVREKSKKQGRVVEALQLAQQVGFPAWVEVAADKAE 185
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EF DIN+ L
Sbjct: 186 GVFKKVPDRDEFGADINESL 205
>gi|300309482|ref|YP_003773574.1| DNA-directed RNA polymerase subunit alpha [Herbaspirillum
seropedicae SmR1]
gi|409408727|ref|ZP_11257162.1| DNA-directed RNA polymerase subunit alpha [Herbaspirillum sp.
GW103]
gi|124483590|emb|CAM32668.1| probable DNA-directed RNA polymerase (alpha chain) protein
[Herbaspirillum seropedicae]
gi|300072267|gb|ADJ61666.1| DNA-directed RNA polymerase alpha chain protein [Herbaspirillum
seropedicae SmR1]
gi|386432049|gb|EIJ44877.1| DNA-directed RNA polymerase subunit alpha [Herbaspirillum sp.
GW103]
Length = 325
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 159/306 (51%), Positives = 186/306 (60%), Gaps = 76/306 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRII+V+TL HAKV+MEPFERGYG+TLGNALRRVLLS+M G APTEV I+G +
Sbjct: 3 NSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNL---------------------KGVIL----------KLYN 285
HEYSSL+GVQED++DI+LNL +G +L +L N
Sbjct: 63 HEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVELIN 122
Query: 286 RDYAILNLKKFGKC---------------------------------------------V 300
D+ I NL GK
Sbjct: 123 PDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVSYA 182
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V ++ +E +D++ + N + EEAIRQSARVLVDQLNVFAALE T E S
Sbjct: 183 VESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAPSR 242
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
+VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE
Sbjct: 243 APQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEIKE 302
Query: 421 ILASRG 426
+LASRG
Sbjct: 303 VLASRG 308
>gi|451936783|ref|YP_007460637.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777706|gb|AGF48681.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 207
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRS DSKCK + +PGQHGR SGSR SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSFDSKCKSESKPGQHGRTSGSRISDYGLQMREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYGILEKQFRRYF E R KG TGEI+++LLESR DNVVYR+GF STR+EARQLIS
Sbjct: 61 KLKRMYGILEKQFRRYFEESERRKGNTGEILIQLLESRLDNVVYRLGFGSTRAEARQLIS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN IV+IAS +K GDIISVREK+K Q RI +++L+ W+ +D++K
Sbjct: 121 HRAIEVNGHIVDIASLSVKSGDIISVREKSKNQDRIKEAIKLAVSIGIPQWLDLDSEKQL 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+RS+ A DIN+ +
Sbjct: 181 GTFKTIPDRSDVARDINESM 200
>gi|451812559|ref|YP_007449013.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778461|gb|AGF49409.1| small subunit ribosomal protein S4 [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 207
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRS DSKCK + +PGQHGR SGSR SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSFDSKCKSESKPGQHGRTSGSRLSDYGLQMREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFRRYF E R KG TGEI+++LLESR DNVVYRMGF STR+EARQLIS
Sbjct: 61 KLKRMYGVLEKQFRRYFEESERRKGNTGEILIQLLESRLDNVVYRMGFGSTRAEARQLIS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN V+IAS +K GDIISVREK+K Q RI +++L+ W+ +D++K
Sbjct: 121 HRAIEVNGHTVDIASLSVKTGDIISVREKSKNQNRIKEAIKLAVSIGIPQWLDLDSEKQI 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+RS+ A DIN+ +
Sbjct: 181 GTFKAVPDRSDVARDINESM 200
>gi|298370567|ref|ZP_06981882.1| ribosomal protein S4 [Neisseria sp. oral taxon 014 str. F0314]
gi|298281177|gb|EFI22667.1| ribosomal protein S4 [Neisseria sp. oral taxon 014 str. F0314]
Length = 206
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 161/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E AR KG TGE++L+LLESR DNVVYR+GF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEAARRKGSTGELLLQLLESRLDNVVYRLGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI SY++K GDII+VREKAKKQ RI +L L+ SW++VD K+E
Sbjct: 120 HKAITVNGQVVNIPSYQVKAGDIIAVREKAKKQVRIQEALNLATQIGLPSWVSVDTNKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE ++DIN+ L
Sbjct: 180 GVFKNMPDRSELSSDINEQL 199
>gi|121609261|ref|YP_997068.1| 30S ribosomal protein S4 [Verminephrobacter eiseniae EF01-2]
gi|152112272|sp|A1WK93.1|RS4_VEREI RecName: Full=30S ribosomal protein S4
gi|121553901|gb|ABM58050.1| SSU ribosomal protein S4P [Verminephrobacter eiseniae EF01-2]
Length = 207
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 154/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAAESRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+++VREK+KKQ RIA +L+L+ +W+ V+ +K E
Sbjct: 121 HKAITVNGQSVNIPSYLVKTGDLVAVREKSKKQGRIAEALQLATQVGMPAWVEVNTEKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+R EF DIN+ L
Sbjct: 181 GLFKKAPDRDEFGADINESL 200
>gi|422348984|ref|ZP_16429876.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658744|gb|EKB31608.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 2_1_59BFAA]
Length = 208
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 131/201 (65%), Positives = 157/201 (78%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARY+GPK KL RREGIDL LKSARRS +SK K +PGQHG+ISG+RTSDYG Q RE
Sbjct: 1 MARYLGPKLKLSRREGIDLNLKSARRSFESKVKDAGSKPGQHGKISGARTSDYGAQMRET 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK KR+YG+LE+QFRRYF E R+ G TGE +L LLESR DNVVYRMGF STR+EARQ++
Sbjct: 61 QKAKRLYGVLERQFRRYFAEAERITGNTGENLLALLESRLDNVVYRMGFGSTRAEARQVV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH A LVN K VNI SY +KPGD+ISVREKA+KQ RIA +LEL++ + W++V+ KK
Sbjct: 121 SHGAILVNGKKVNIPSYHVKPGDVISVREKAQKQARIAEALELAQQNGFPGWVSVEPKKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P R E A +IN+ L
Sbjct: 181 EGTFKNVPARDEIAYEINEAL 201
>gi|241763534|ref|ZP_04761586.1| ribosomal protein S4 [Acidovorax delafieldii 2AN]
gi|241367265|gb|EER61605.1| ribosomal protein S4 [Acidovorax delafieldii 2AN]
Length = 207
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 154/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILEKQFRRYF KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGILEKQFRRYFEAADGRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+++VREK+KKQ+RI +L+L+ +W+ V+A K E
Sbjct: 121 HKAITVNGQSVNIPSYLVKVGDVVAVREKSKKQSRIVEALQLAAQVGMPAWVEVNADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+R EF DIN+ L
Sbjct: 181 GIFKKVPDRDEFGADINESL 200
>gi|156310431|ref|XP_001617741.1| hypothetical protein NEMVEDRAFT_v1g156832 [Nematostella vectensis]
gi|156195585|gb|EDO25641.1| predicted protein [Nematostella vectensis]
Length = 207
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 151/200 (75%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARYIGPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSD+G Q REKQ
Sbjct: 1 VARYIGPKAKLSRREGTDLFLKSARRSIADKSKFDTKPGQHGRTSGQRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF + KG TG +L LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+++VREK+KKQ RI +L+L+ +W+ V A K E
Sbjct: 121 HKAITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKSPDRDEFGADINESL 200
>gi|410638624|ref|ZP_11349183.1| small subunit ribosomal protein S4 [Glaciecola lipolytica E3]
gi|410141788|dbj|GAC16388.1| small subunit ribosomal protein S4 [Glaciecola lipolytica E3]
Length = 206
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI SY + D++SVREK+KKQ RI +LEL++ +WI VD+KKME
Sbjct: 120 HKAIMVNGKVVNIPSYNVSAEDVVSVREKSKKQARIVAALELADQREKPTWIEVDSKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + +IN+ L
Sbjct: 180 GVFKRIPERTDLSAEINEQL 199
>gi|317494318|ref|ZP_07952732.1| ribosomal protein S4 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365834682|ref|ZP_09376125.1| ribosomal protein S4 [Hafnia alvei ATCC 51873]
gi|316917568|gb|EFV38913.1| ribosomal protein S4 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364568795|gb|EHM46433.1| ribosomal protein S4 [Hafnia alvei ATCC 51873]
Length = 206
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAVVVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRNPERSDLSADINEHL 199
>gi|345874160|ref|ZP_08825976.1| ribosomal protein S4 [Neisseria weaveri LMG 5135]
gi|417957269|ref|ZP_12600194.1| ribosomal protein S4 [Neisseria weaveri ATCC 51223]
gi|343968673|gb|EGV36898.1| ribosomal protein S4 [Neisseria weaveri ATCC 51223]
gi|343970805|gb|EGV38976.1| ribosomal protein S4 [Neisseria weaveri LMG 5135]
Length = 206
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 161/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSL+SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLESKCKMDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E +R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEASRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW++VDA KME
Sbjct: 120 HKAITVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAAQIGMPSWVSVDAPKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE + DIN+ L
Sbjct: 180 GVFKNMPDRSELSGDINEQL 199
>gi|407793906|ref|ZP_11140936.1| 30S ribosomal protein S4 [Idiomarina xiamenensis 10-D-4]
gi|407213759|gb|EKE83612.1| 30S ribosomal protein S4 [Idiomarina xiamenensis 10-D-4]
Length = 206
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG SR SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIETAPGQHG-ARRSRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+ ++P D++SVREKAKKQ RIA +LEL+E W+ VD+K ME
Sbjct: 120 HKAVVVNGQVVNIPSFTVRPEDVVSVREKAKKQARIAAALELAEQREKPVWVEVDSKGME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GQFKRLPERSDLSADINEQL 199
>gi|241759655|ref|ZP_04757756.1| ribosomal protein S4 [Neisseria flavescens SK114]
gi|241320027|gb|EER56408.1| ribosomal protein S4 [Neisseria flavescens SK114]
Length = 206
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 161/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKMDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW++VDA K+E
Sbjct: 120 HKAIIVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE + DIN+ L
Sbjct: 180 GVFKNMPDRSELSGDINEQL 199
>gi|319639573|ref|ZP_07994320.1| 30S ribosomal protein S4 [Neisseria mucosa C102]
gi|317399144|gb|EFV79818.1| 30S ribosomal protein S4 [Neisseria mucosa C102]
Length = 206
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 161/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKMDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW++VDA K+E
Sbjct: 120 HKAIVVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE + DIN+ L
Sbjct: 180 GVFKNMPDRSELSGDINEQL 199
>gi|448244237|ref|YP_007408290.1| 30S ribosomal subunit protein S4 [Serratia marcescens WW4]
gi|445214601|gb|AGE20271.1| 30S ribosomal subunit protein S4 [Serratia marcescens WW4]
gi|453066271|gb|EMF07220.1| 30S ribosomal protein S4 [Serratia marcescens VGH107]
Length = 206
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEATRLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ SLEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRMPERTDLSADINEHL 199
>gi|255067434|ref|ZP_05319289.1| ribosomal protein S4 [Neisseria sicca ATCC 29256]
gi|261364879|ref|ZP_05977762.1| ribosomal protein S4 [Neisseria mucosa ATCC 25996]
gi|340360980|ref|ZP_08683430.1| 30S ribosomal protein S4 [Neisseria macacae ATCC 33926]
gi|419796964|ref|ZP_14322475.1| ribosomal protein S4 [Neisseria sicca VK64]
gi|255048229|gb|EET43693.1| ribosomal protein S4 [Neisseria sicca ATCC 29256]
gi|288566927|gb|EFC88487.1| ribosomal protein S4 [Neisseria mucosa ATCC 25996]
gi|339889211|gb|EGQ78596.1| 30S ribosomal protein S4 [Neisseria macacae ATCC 33926]
gi|385698966|gb|EIG29292.1| ribosomal protein S4 [Neisseria sicca VK64]
Length = 206
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKLDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW++VDA K+E
Sbjct: 120 HKAITVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE DIN+ L
Sbjct: 180 GVFKNMPDRSELTGDINEQL 199
>gi|149376660|ref|ZP_01894419.1| ribosomal protein S4 [Marinobacter algicola DG893]
gi|149359033|gb|EDM47498.1| ribosomal protein S4 [Marinobacter algicola DG893]
Length = 206
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKC ++ PG HG G R S+YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIETPPGMHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARIKGATGENLLQLLEGRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI SY+++PGD++SVREKAK Q R+ +L+LS P SW+ VDA KM
Sbjct: 120 HKAILVNDKLVNIPSYQVRPGDVVSVREKAKNQLRVKGALDLSSSRAPVSWVEVDASKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV++S P R+E DIN+ L
Sbjct: 180 GVYRSVPERTELPADINENL 199
>gi|152972204|ref|YP_001337350.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206575742|ref|YP_002236302.1| 30S ribosomal protein S4 [Klebsiella pneumoniae 342]
gi|238896793|ref|YP_002921538.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262045155|ref|ZP_06018182.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288933290|ref|YP_003437349.1| 30S ribosomal protein S4 [Klebsiella variicola At-22]
gi|290512092|ref|ZP_06551460.1| 30S ribosomal protein S4 [Klebsiella sp. 1_1_55]
gi|330002271|ref|ZP_08304265.1| ribosomal protein S4 [Klebsiella sp. MS 92-3]
gi|336247463|ref|YP_004591173.1| 30S ribosomal protein S4 [Enterobacter aerogenes KCTC 2190]
gi|365140604|ref|ZP_09346614.1| 30S ribosomal protein S4 [Klebsiella sp. 4_1_44FAA]
gi|378981004|ref|YP_005229145.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386036830|ref|YP_005956743.1| 30S ribosomal protein S4 [Klebsiella pneumoniae KCTC 2242]
gi|402778710|ref|YP_006634256.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|419976849|ref|ZP_14492236.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419982575|ref|ZP_14497830.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419988183|ref|ZP_14503284.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419993950|ref|ZP_14508878.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419999784|ref|ZP_14514550.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420005627|ref|ZP_14520243.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420011338|ref|ZP_14525792.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420017339|ref|ZP_14531614.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420022834|ref|ZP_14536991.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420028614|ref|ZP_14542585.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420034482|ref|ZP_14548266.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420040106|ref|ZP_14553723.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420045869|ref|ZP_14559326.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420051686|ref|ZP_14564964.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420057352|ref|ZP_14570491.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420062792|ref|ZP_14575753.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420068804|ref|ZP_14581573.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420074718|ref|ZP_14587313.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420080290|ref|ZP_14592717.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420085453|ref|ZP_14597677.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|424832665|ref|ZP_18257393.1| ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|424931487|ref|ZP_18349859.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425074583|ref|ZP_18477686.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425083473|ref|ZP_18486570.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|425085219|ref|ZP_18488312.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425093588|ref|ZP_18496672.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|428934975|ref|ZP_19008473.1| 30S ribosomal protein S4 [Klebsiella pneumoniae JHCK1]
gi|428941568|ref|ZP_19014609.1| 30S ribosomal protein S4 [Klebsiella pneumoniae VA360]
gi|440285893|ref|YP_007338658.1| ribosomal protein S4, bacterial/organelle type [Enterobacteriaceae
bacterium strain FGI 57]
gi|449053769|ref|ZP_21732600.1| 30S ribosomal protein S4 [Klebsiella pneumoniae hvKP1]
gi|172052444|sp|A6TEU9.1|RS4_KLEP7 RecName: Full=30S ribosomal protein S4
gi|226699076|sp|B5XNB5.1|RS4_KLEP3 RecName: Full=30S ribosomal protein S4
gi|150957053|gb|ABR79083.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206564800|gb|ACI06576.1| ribosomal protein S4 [Klebsiella pneumoniae 342]
gi|238549120|dbj|BAH65471.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259037475|gb|EEW38719.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288888019|gb|ADC56337.1| ribosomal protein S4 [Klebsiella variicola At-22]
gi|289775882|gb|EFD83882.1| 30S ribosomal protein S4 [Klebsiella sp. 1_1_55]
gi|328537344|gb|EGF63594.1| ribosomal protein S4 [Klebsiella sp. MS 92-3]
gi|334733519|gb|AEG95894.1| 30S ribosomal protein S4 [Enterobacter aerogenes KCTC 2190]
gi|339763958|gb|AEK00179.1| 30S ribosomal protein S4 [Klebsiella pneumoniae KCTC 2242]
gi|363653459|gb|EHL92425.1| 30S ribosomal protein S4 [Klebsiella sp. 4_1_44FAA]
gi|364520415|gb|AEW63543.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397339570|gb|EJJ32810.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397340051|gb|EJJ33268.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397341663|gb|EJJ34838.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397357331|gb|EJJ50093.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397357367|gb|EJJ50128.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397360918|gb|EJJ53588.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397373696|gb|EJJ66092.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397376056|gb|EJJ68326.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397382804|gb|EJJ74959.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397391387|gb|EJJ83242.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397392503|gb|EJJ84295.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397400483|gb|EJJ92125.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397408708|gb|EJK00059.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397408815|gb|EJK00160.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397419603|gb|EJK10743.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397425852|gb|EJK16713.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397427168|gb|EJK17953.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397434054|gb|EJK24695.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397441925|gb|EJK32290.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397449169|gb|EJK39315.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402539664|gb|AFQ63813.1| SSU ribosomal protein S4p (S9e) [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405596048|gb|EKB69418.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405598674|gb|EKB71876.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|405608634|gb|EKB81585.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405610563|gb|EKB83358.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|407805674|gb|EKF76925.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|414710109|emb|CCN31813.1| ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|426300277|gb|EKV62570.1| 30S ribosomal protein S4 [Klebsiella pneumoniae VA360]
gi|426301660|gb|EKV63892.1| 30S ribosomal protein S4 [Klebsiella pneumoniae JHCK1]
gi|440045415|gb|AGB76473.1| ribosomal protein S4, bacterial/organelle type [Enterobacteriaceae
bacterium strain FGI 57]
gi|448875574|gb|EMB10587.1| 30S ribosomal protein S4 [Klebsiella pneumoniae hvKP1]
Length = 206
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRQPERSDLSADINEHL 199
>gi|385854346|ref|YP_005900859.1| 30S ribosomal protein S4 [Neisseria meningitidis M01-240355]
gi|325203287|gb|ADY98740.1| ribosomal protein S4 [Neisseria meningitidis M01-240355]
Length = 206
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 160/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCK+D PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHG-AKKTRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++K GD++SVREKAKKQ RI +L L+ W++VDA K+E
Sbjct: 120 HKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE DIN+ L
Sbjct: 180 GVFKNMPDRSELTGDINEQL 199
>gi|455737439|ref|YP_007503705.1| SSU ribosomal protein S4p (S9e) [Morganella morganii subsp.
morganii KT]
gi|455419002|gb|AGG29332.1| SSU ribosomal protein S4p (S9e) [Morganella morganii subsp.
morganii KT]
Length = 206
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKLD PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLDQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E RLKG TGE +L LLE R DNV+YRMGF +TR+EARQ++S
Sbjct: 60 KVRRMYGVLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVIYRMGFGATRAEARQIVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D+IS+REKAKKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVISIREKAKKQSRIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|442608498|ref|ZP_21023247.1| SSU ribosomal protein S4p (S9e) [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441750166|emb|CCQ09309.1| SSU ribosomal protein S4p (S9e) [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 206
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VN+ SYKI P D++ +REK+KKQ RI +LEL+E +WI VD KKME
Sbjct: 120 HKAVMVNGRVVNVPSYKITPEDVVVIREKSKKQARIIAALELAEQREKPTWIEVDGKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|121997625|ref|YP_001002412.1| 30S ribosomal protein S4 [Halorhodospira halophila SL1]
gi|152060952|sp|A1WV98.1|RS4_HALHL RecName: Full=30S ribosomal protein S4
gi|121589030|gb|ABM61610.1| SSU ribosomal protein S4P [Halorhodospira halophila SL1]
Length = 207
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+YIGPK KL RRE DLFLKS RS+D+KCKL+ PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MAKYIGPKCKLARREKTDLFLKSGVRSIDTKCKLEQPPGQHGQRRGGRMSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGI+E+QFR Y+ E AR K TG +L+LLESR DNV YRMGF STR+EARQL++
Sbjct: 61 KVRRMYGIMERQFRNYYKEAARRKAATGTALLQLLESRLDNVCYRMGFGSTRAEARQLVN 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR LVN ++VNI SY+++PGD +SV+EKAK Q RI +LEL++ + SW+ VDA KME
Sbjct: 121 HRGVLVNGRVVNIPSYQVQPGDTVSVKEKAKSQLRIQAALELAQQNGWASWVDVDATKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ + +IN+ L
Sbjct: 181 GVFKQAPDRADLSQEINESL 200
>gi|440232815|ref|YP_007346608.1| SSU ribosomal protein S4P [Serratia marcescens FGI94]
gi|440054520|gb|AGB84423.1| SSU ribosomal protein S4P [Serratia marcescens FGI94]
Length = 206
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRMPERTDLSADINEHL 199
>gi|387813042|ref|YP_005428523.1| 30S ribosomal protein S4 [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381338053|emb|CCG94100.1| 30S ribosomal subunit protein S4 [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 206
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKC ++ PG HG G R S+YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIETPPGMHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR KG TGE +L+LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARGKGATGENLLQLLEGRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI SY++KPGD++SVREKAK Q R+ +L+L+ P SW+ VDA KM
Sbjct: 120 HKAILVNDKPVNIPSYQVKPGDVVSVREKAKNQLRVKGALDLASSRAPVSWVEVDANKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+KS P R+E DIN+ L
Sbjct: 180 GVYKSVPERTELPADINENL 199
>gi|395233948|ref|ZP_10412182.1| 30S ribosomal protein S4 [Enterobacter sp. Ag1]
gi|394731570|gb|EJF31329.1| 30S ribosomal protein S4 [Enterobacter sp. Ag1]
Length = 206
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK +P R++ + DIN+ L
Sbjct: 180 GVFKRKPERTDLSADINEHL 199
>gi|171060594|ref|YP_001792943.1| 30S ribosomal protein S4 [Leptothrix cholodnii SP-6]
gi|226699083|sp|B1Y7N0.1|RS4_LEPCP RecName: Full=30S ribosomal protein S4
gi|170778039|gb|ACB36178.1| ribosomal protein S4 [Leptothrix cholodnii SP-6]
Length = 207
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DL+LKSARRS+ K K + +PGQHGR SGSRTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLYLKSARRSISDKSKFESKPGQHGRTSGSRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFAEADRRKGNTGANLLLLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+ISVREK+KKQ RI ++L+L++ +W++VD KME
Sbjct: 121 HKAVTVNGQSVNIPSYLVKAGDVISVREKSKKQLRIIDALKLADSIGLPAWVSVDLTKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+R EF +IN+ L
Sbjct: 181 GIFKKAPDRDEFGAEINESL 200
>gi|120553676|ref|YP_958027.1| 30S ribosomal protein S4 [Marinobacter aquaeolei VT8]
gi|152060959|sp|A1TYM1.1|RS4_MARAV RecName: Full=30S ribosomal protein S4
gi|120323525|gb|ABM17840.1| SSU ribosomal protein S4P [Marinobacter aquaeolei VT8]
Length = 206
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKC ++ PG HG G R S+YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIETPPGMHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR KG TGE +L+LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARGKGATGENLLQLLEGRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI SY++KPGD++SVREKAK Q R+ +L+L+ P SW+ VDA KM
Sbjct: 120 HKAVLVNDKPVNIPSYQVKPGDVVSVREKAKNQLRVKGALDLASSRAPVSWVEVDANKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+KS P R+E DIN+ L
Sbjct: 180 GVYKSVPERTELPADINENL 199
>gi|319942197|ref|ZP_08016513.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 3_1_45B]
gi|319804250|gb|EFW01142.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 3_1_45B]
Length = 208
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 128/201 (63%), Positives = 159/201 (79%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARY+GPK KL RREGIDL LKSARRS +SK K + +PGQHG+ISG+RTSDYG Q RE
Sbjct: 1 MARYLGPKLKLSRREGIDLNLKSARRSFESKVKDVGSKPGQHGKISGARTSDYGNQMRET 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK KRMYG+LE+QFRRYF E +RL+G TGE +L+LLESR DNVVYRMGF STR+E+RQL+
Sbjct: 61 QKAKRMYGVLERQFRRYFAEASRLRGNTGEKLLQLLESRLDNVVYRMGFGSTRAESRQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH A VN + VNI SY ++ GD+I++REKA+KQ RIA +LEL++ + +W+ VDAKK
Sbjct: 121 SHGAIEVNGRKVNIPSYSVRAGDVITIREKAQKQVRIAEALELAQQNGFPAWVEVDAKKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
G FK+ P R E A +IN+ L
Sbjct: 181 TGTFKNAPARDEIAPEINEAL 201
>gi|157372753|ref|YP_001480742.1| 30S ribosomal protein S4 [Serratia proteamaculans 568]
gi|172047788|sp|A8GKH4.1|RS4_SERP5 RecName: Full=30S ribosomal protein S4
gi|157324517|gb|ABV43614.1| ribosomal protein S4 [Serratia proteamaculans 568]
Length = 206
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TRSE+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ SLEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRMPERTDLSADINEHL 199
>gi|350570678|ref|ZP_08939027.1| 30S ribosomal protein S4 [Neisseria wadsworthii 9715]
gi|349795342|gb|EGZ49143.1| 30S ribosomal protein S4 [Neisseria wadsworthii 9715]
Length = 206
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 160/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY G K KL RREG DLFLKSARRSL+SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYTGSKCKLARREGTDLFLKSARRSLESKCKIDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E +R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEASRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VN+ SY++KPGD+++VREKAKKQ RI +L L+E SW++VDA KME
Sbjct: 120 HKAITVNGQVVNVPSYQVKPGDVVAVREKAKKQVRIQEALGLAEQIGLPSWVSVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK+ P+RSE DIN+ L
Sbjct: 180 GIFKNMPDRSELYGDINEQL 199
>gi|291619151|ref|YP_003521893.1| 30S ribosomal protein S4 [Pantoea ananatis LMG 20103]
gi|378765416|ref|YP_005193875.1| 30S ribosomal protein S4 [Pantoea ananatis LMG 5342]
gi|386077669|ref|YP_005991194.1| 30S ribosomal protein S4 [Pantoea ananatis PA13]
gi|291154181|gb|ADD78765.1| RpsD [Pantoea ananatis LMG 20103]
gi|354986850|gb|AER30974.1| 30S ribosomal protein S4 [Pantoea ananatis PA13]
gi|365184888|emb|CCF07838.1| 30S ribosomal protein S4 [Pantoea ananatis LMG 5342]
Length = 206
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|320540587|ref|ZP_08040237.1| 30S ribosomal subunit protein S4 [Serratia symbiotica str. Tucson]
gi|320029518|gb|EFW11547.1| 30S ribosomal subunit protein S4 [Serratia symbiotica str. Tucson]
Length = 206
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ SLEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDALKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|417228176|ref|ZP_12029934.1| ribosomal protein S4 [Escherichia coli 5.0959]
gi|386207511|gb|EII12016.1| ribosomal protein S4 [Escherichia coli 5.0959]
Length = 206
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D+IS+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVISIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>gi|261346911|ref|ZP_05974555.1| ribosomal protein S4 [Providencia rustigianii DSM 4541]
gi|282564977|gb|EFB70512.1| ribosomal protein S4 [Providencia rustigianii DSM 4541]
Length = 206
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+EARQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D+ISVREKAKKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRMPERTDLSADINEHL 199
>gi|383188342|ref|YP_005198470.1| 30S ribosomal protein S4 [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371586600|gb|AEX50330.1| ribosomal protein S4, bacterial/organelle type [Rahnella aquatilis
CIP 78.65 = ATCC 33071]
Length = 206
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ ++DIN+ L
Sbjct: 180 GVFKRMPERTDLSSDINEHL 199
>gi|312968379|ref|ZP_07782589.1| ribosomal protein S4 [Escherichia coli 2362-75]
gi|312287204|gb|EFR15114.1| ribosomal protein S4 [Escherichia coli 2362-75]
Length = 206
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNDRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>gi|375257657|ref|YP_005016827.1| 30S ribosomal protein S4 [Klebsiella oxytoca KCTC 1686]
gi|421728640|ref|ZP_16167792.1| 30S ribosomal protein S4 [Klebsiella oxytoca M5al]
gi|423105153|ref|ZP_17092855.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5242]
gi|423126066|ref|ZP_17113745.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5250]
gi|365907135|gb|AEX02588.1| 30S ribosomal protein S4 [Klebsiella oxytoca KCTC 1686]
gi|376381919|gb|EHS94655.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5242]
gi|376397638|gb|EHT10268.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5250]
gi|410370549|gb|EKP25278.1| 30S ribosomal protein S4 [Klebsiella oxytoca M5al]
Length = 206
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGENLLTLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRQPERSDLSADINEHL 199
>gi|261342766|ref|ZP_05970624.1| ribosomal protein S4 [Enterobacter cancerogenus ATCC 35316]
gi|365972386|ref|YP_004953947.1| 30S ribosomal protein S4 [Enterobacter cloacae EcWSU1]
gi|401679012|ref|ZP_10810960.1| ribosomal protein S4 [Enterobacter sp. SST3]
gi|423122403|ref|ZP_17110087.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5246]
gi|288314945|gb|EFC53883.1| ribosomal protein S4 [Enterobacter cancerogenus ATCC 35316]
gi|365751299|gb|AEW75526.1| 30S ribosomal protein S4 [Enterobacter cloacae EcWSU1]
gi|376392220|gb|EHT04885.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5246]
gi|400213732|gb|EJO44670.1| ribosomal protein S4 [Enterobacter sp. SST3]
Length = 206
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRQPERSDLSADINEHL 199
>gi|56460992|ref|YP_156273.1| 30S ribosomal protein S4 [Idiomarina loihiensis L2TR]
gi|61215388|sp|Q5QXV7.1|RS4_IDILO RecName: Full=30S ribosomal protein S4
gi|56180002|gb|AAV82724.1| Ribosomal protein S4 [Idiomarina loihiensis L2TR]
Length = 206
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIETAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+K++P D++SVREKAKKQ RI +LEL+E WI VD K+E
Sbjct: 120 HKAVVVNGQVVNIPSFKVRPEDVVSVREKAKKQARIGAALELAEQREKPVWIEVDNNKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRLPERSDLSAEINEQL 199
>gi|15803823|ref|NP_289857.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. EDL933]
gi|15833415|ref|NP_312188.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. Sakai]
gi|16131175|ref|NP_417755.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12
substr. MG1655]
gi|26249881|ref|NP_755921.1| 30S ribosomal protein S4 [Escherichia coli CFT073]
gi|74313815|ref|YP_312234.1| 30S ribosomal protein S4 [Shigella sonnei Ss046]
gi|82545659|ref|YP_409606.1| 30S ribosomal protein S4 [Shigella boydii Sb227]
gi|82778592|ref|YP_404941.1| 30S ribosomal protein S4 [Shigella dysenteriae Sd197]
gi|91212723|ref|YP_542709.1| 30S ribosomal protein S4 [Escherichia coli UTI89]
gi|110643535|ref|YP_671265.1| 30S ribosomal protein S4 [Escherichia coli 536]
gi|110807144|ref|YP_690664.1| 30S ribosomal protein S4 [Shigella flexneri 5 str. 8401]
gi|117625578|ref|YP_858901.1| 30S ribosomal protein S4 [Escherichia coli APEC O1]
gi|157148871|ref|YP_001456190.1| 30S ribosomal protein S4 [Citrobacter koseri ATCC BAA-895]
gi|157156792|ref|YP_001464764.1| 30S ribosomal protein S4 [Escherichia coli E24377A]
gi|157162770|ref|YP_001460088.1| 30S ribosomal protein S4 [Escherichia coli HS]
gi|161486375|ref|NP_839574.2| 30S ribosomal protein S4 [Shigella flexneri 2a str. 2457T]
gi|168752255|ref|ZP_02777277.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4113]
gi|168758524|ref|ZP_02783531.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4401]
gi|168764979|ref|ZP_02789986.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4501]
gi|168769158|ref|ZP_02794165.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4486]
gi|168777846|ref|ZP_02802853.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4196]
gi|168783864|ref|ZP_02808871.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4076]
gi|168786186|ref|ZP_02811193.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC869]
gi|168802725|ref|ZP_02827732.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC508]
gi|170018468|ref|YP_001723422.1| 30S ribosomal protein S4 [Escherichia coli ATCC 8739]
gi|170082816|ref|YP_001732136.1| 30S ribosomal protein S4 [Escherichia coli str. K-12 substr. DH10B]
gi|170683332|ref|YP_001745558.1| 30S ribosomal protein S4 [Escherichia coli SMS-3-5]
gi|170769606|ref|ZP_02904059.1| ribosomal protein S4 [Escherichia albertii TW07627]
gi|187732648|ref|YP_001881981.1| 30S ribosomal protein S4 [Shigella boydii CDC 3083-94]
gi|188495865|ref|ZP_03003135.1| ribosomal protein S4 [Escherichia coli 53638]
gi|191174447|ref|ZP_03035948.1| ribosomal protein S4 [Escherichia coli F11]
gi|193066487|ref|ZP_03047531.1| ribosomal protein S4 [Escherichia coli E22]
gi|193071545|ref|ZP_03052454.1| ribosomal protein S4 [Escherichia coli E110019]
gi|194430280|ref|ZP_03062775.1| ribosomal protein S4 [Escherichia coli B171]
gi|194435081|ref|ZP_03067319.1| ribosomal protein S4 [Shigella dysenteriae 1012]
gi|194439993|ref|ZP_03072051.1| ribosomal protein S4 [Escherichia coli 101-1]
gi|195939844|ref|ZP_03085226.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. EC4024]
gi|208806540|ref|ZP_03248877.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4206]
gi|208812921|ref|ZP_03254250.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4045]
gi|208819506|ref|ZP_03259826.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4042]
gi|209396300|ref|YP_002272752.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. EC4115]
gi|209920762|ref|YP_002294846.1| 30S ribosomal protein S4 [Escherichia coli SE11]
gi|215488596|ref|YP_002331027.1| 30S ribosomal protein S4 [Escherichia coli O127:H6 str. E2348/69]
gi|217325090|ref|ZP_03441174.1| ribosomal protein S4 [Escherichia coli O157:H7 str. TW14588]
gi|218550572|ref|YP_002384363.1| 30S ribosomal protein S4 [Escherichia fergusonii ATCC 35469]
gi|218555854|ref|YP_002388767.1| 30S ribosomal protein S4 [Escherichia coli IAI1]
gi|218560358|ref|YP_002393271.1| 30S ribosomal protein S4 [Escherichia coli S88]
gi|218691583|ref|YP_002399795.1| 30S ribosomal protein S4 [Escherichia coli ED1a]
gi|218696989|ref|YP_002404656.1| 30S ribosomal protein S4 [Escherichia coli 55989]
gi|218702059|ref|YP_002409688.1| 30S ribosomal protein S4 [Escherichia coli IAI39]
gi|218706904|ref|YP_002414423.1| 30S ribosomal protein S4 [Escherichia coli UMN026]
gi|222158000|ref|YP_002558139.1| 30S ribosomal protein S4 [Escherichia coli LF82]
gi|227883428|ref|ZP_04001233.1| 30S ribosomal protein S4 [Escherichia coli 83972]
gi|237703026|ref|ZP_04533507.1| 30S ribosomal subunit protein S4 [Escherichia sp. 3_2_53FAA]
gi|238902387|ref|YP_002928183.1| 30S ribosomal protein S4 [Escherichia coli BW2952]
gi|251786550|ref|YP_003000854.1| 30S ribosomal protein S4 [Escherichia coli BL21(DE3)]
gi|253771880|ref|YP_003034711.1| 30S ribosomal protein S4 [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163224|ref|YP_003046332.1| 30S ribosomal protein S4 [Escherichia coli B str. REL606]
gi|254289974|ref|YP_003055722.1| 30S ribosomal protein S4 [Escherichia coli BL21(DE3)]
gi|254795233|ref|YP_003080070.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. TW14359]
gi|260846094|ref|YP_003223872.1| 30S ribosomal subunit protein S4 [Escherichia coli O103:H2 str.
12009]
gi|260857417|ref|YP_003231308.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. 11368]
gi|260870039|ref|YP_003236441.1| 30S ribosomal protein S4 [Escherichia coli O111:H- str. 11128]
gi|261224601|ref|ZP_05938882.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254505|ref|ZP_05947038.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str.
FRIK966]
gi|291284654|ref|YP_003501472.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. CB9615]
gi|293406893|ref|ZP_06650817.1| rpsD [Escherichia coli FVEC1412]
gi|293412715|ref|ZP_06655383.1| 30S ribosomal protein S4 [Escherichia coli B354]
gi|293416715|ref|ZP_06659352.1| 30S ribosomal protein S4 [Escherichia coli B185]
gi|293453615|ref|ZP_06664034.1| 30S ribosomal protein S4 [Escherichia coli B088]
gi|297517820|ref|ZP_06936206.1| 30S ribosomal protein S4 [Escherichia coli OP50]
gi|298382634|ref|ZP_06992229.1| small subunit ribosomal protein S4 [Escherichia coli FVEC1302]
gi|300815493|ref|ZP_07095718.1| ribosomal protein S4 [Escherichia coli MS 107-1]
gi|300822900|ref|ZP_07103036.1| ribosomal protein S4 [Escherichia coli MS 119-7]
gi|300896645|ref|ZP_07115161.1| ribosomal protein S4 [Escherichia coli MS 198-1]
gi|300903545|ref|ZP_07121467.1| ribosomal protein S4 [Escherichia coli MS 84-1]
gi|300918271|ref|ZP_07134875.1| ribosomal protein S4 [Escherichia coli MS 115-1]
gi|300921894|ref|ZP_07138050.1| ribosomal protein S4 [Escherichia coli MS 182-1]
gi|300932190|ref|ZP_07147469.1| ribosomal protein S4 [Escherichia coli MS 187-1]
gi|300935295|ref|ZP_07150305.1| ribosomal protein S4 [Escherichia coli MS 21-1]
gi|300946519|ref|ZP_07160784.1| ribosomal protein S4 [Escherichia coli MS 116-1]
gi|300954829|ref|ZP_07167255.1| ribosomal protein S4 [Escherichia coli MS 175-1]
gi|300973976|ref|ZP_07172383.1| ribosomal protein S4 [Escherichia coli MS 200-1]
gi|300979869|ref|ZP_07174745.1| ribosomal protein S4 [Escherichia coli MS 45-1]
gi|301018838|ref|ZP_07183082.1| ribosomal protein S4 [Escherichia coli MS 69-1]
gi|301046068|ref|ZP_07193246.1| ribosomal protein S4 [Escherichia coli MS 185-1]
gi|301305506|ref|ZP_07211598.1| ribosomal protein S4 [Escherichia coli MS 124-1]
gi|301325136|ref|ZP_07218670.1| ribosomal protein S4 [Escherichia coli MS 78-1]
gi|301643883|ref|ZP_07243914.1| ribosomal protein S4 [Escherichia coli MS 146-1]
gi|306816361|ref|ZP_07450499.1| 30S ribosomal protein S4 [Escherichia coli NC101]
gi|307315125|ref|ZP_07594708.1| ribosomal protein S4 [Escherichia coli W]
gi|309794572|ref|ZP_07688994.1| ribosomal protein S4 [Escherichia coli MS 145-7]
gi|331643992|ref|ZP_08345121.1| ribosomal protein S4 [Escherichia coli H736]
gi|331649093|ref|ZP_08350179.1| ribosomal protein S4 [Escherichia coli M605]
gi|331654889|ref|ZP_08355888.1| ribosomal protein S4 [Escherichia coli M718]
gi|331659586|ref|ZP_08360524.1| ribosomal protein S4 [Escherichia coli TA206]
gi|331664909|ref|ZP_08365810.1| ribosomal protein S4 [Escherichia coli TA143]
gi|331670125|ref|ZP_08370964.1| ribosomal protein S4 [Escherichia coli TA271]
gi|331674802|ref|ZP_08375559.1| ribosomal protein S4 [Escherichia coli TA280]
gi|331679365|ref|ZP_08380035.1| ribosomal protein S4 [Escherichia coli H591]
gi|331684938|ref|ZP_08385524.1| ribosomal protein S4 [Escherichia coli H299]
gi|332281851|ref|ZP_08394264.1| 30S ribosomal subunit protein S4 [Shigella sp. D9]
gi|366161341|ref|ZP_09461203.1| 30S ribosomal protein S4 [Escherichia sp. TW09308]
gi|378711264|ref|YP_005276157.1| 30S ribosomal protein S4 [Escherichia coli KO11FL]
gi|383180470|ref|YP_005458475.1| 30S ribosomal protein S4 [Shigella sonnei 53G]
gi|384544874|ref|YP_005728938.1| 30S ribosomal protein S4 [Shigella flexneri 2002017]
gi|386283036|ref|ZP_10060676.1| 30S ribosomal protein S4 [Escherichia sp. 4_1_40B]
gi|386593996|ref|YP_006090396.1| 30S ribosomal protein S4 [Escherichia coli DH1]
gi|386601314|ref|YP_006102820.1| 30S ribosomal protein S4 [Escherichia coli IHE3034]
gi|386605847|ref|YP_006112147.1| 30S ribosomal protein S4 [Escherichia coli UM146]
gi|386610671|ref|YP_006126157.1| 30S ribosomal protein S4 [Escherichia coli W]
gi|386626099|ref|YP_006145827.1| 30S ribosomal protein S4 [Escherichia coli O7:K1 str. CE10]
gi|386631176|ref|YP_006150896.1| 30S ribosomal protein S4 [Escherichia coli str. 'clone D i2']
gi|386636096|ref|YP_006155815.1| 30S ribosomal protein S4 [Escherichia coli str. 'clone D i14']
gi|386640892|ref|YP_006107690.1| 30S ribosomal protein S4 [Escherichia coli ABU 83972]
gi|386699750|ref|YP_006163587.1| 30S ribosomal protein S4 [Escherichia coli KO11FL]
gi|386711189|ref|YP_006174910.1| 30S ribosomal protein S4 [Escherichia coli W]
gi|387508688|ref|YP_006160944.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. RM12579]
gi|387609002|ref|YP_006097858.1| 30S ribosomal protein S4 [Escherichia coli 042]
gi|387613972|ref|YP_006117088.1| 30S ribosomal protein S4 [Escherichia coli ETEC H10407]
gi|387618586|ref|YP_006121608.1| 30S ribosomal protein S4 [Escherichia coli O83:H1 str. NRG 857C]
gi|387622947|ref|YP_006130575.1| 30S ribosomal protein S4 [Escherichia coli DH1]
gi|387831174|ref|YP_003351111.1| 30S ribosomal protein S4 [Escherichia coli SE15]
gi|387884466|ref|YP_006314768.1| 30S ribosomal protein S4 [Escherichia coli Xuzhou21]
gi|388479942|ref|YP_492136.1| 30S ribosomal protein S4 [Escherichia coli str. K-12 substr. W3110]
gi|404376666|ref|ZP_10981820.1| 30S ribosomal protein S4 [Escherichia sp. 1_1_43]
gi|407471259|ref|YP_006782298.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480085|ref|YP_006777234.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 2011C-3493]
gi|410480646|ref|YP_006768192.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415795760|ref|ZP_11497273.1| ribosomal protein S4 [Escherichia coli E128010]
gi|415810464|ref|ZP_11502831.1| ribosomal protein S4 [Escherichia coli LT-68]
gi|415839112|ref|ZP_11520930.1| ribosomal protein S4 [Escherichia coli RN587/1]
gi|415862919|ref|ZP_11536280.1| ribosomal protein S4 [Escherichia coli MS 85-1]
gi|415879122|ref|ZP_11544582.1| ribosomal protein S4 [Escherichia coli MS 79-10]
gi|416278421|ref|ZP_11644578.1| SSU ribosomal protein S4p (S9e) [Shigella boydii ATCC 9905]
gi|416777944|ref|ZP_11875516.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. G5101]
gi|416789228|ref|ZP_11880359.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. 493-89]
gi|416801091|ref|ZP_11885264.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. H 2687]
gi|416811992|ref|ZP_11890213.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. 3256-97]
gi|416822297|ref|ZP_11894733.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. USDA 5905]
gi|416832667|ref|ZP_11899830.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. LSU-61]
gi|416899684|ref|ZP_11929090.1| ribosomal protein S4 [Escherichia coli STEC_7v]
gi|417116760|ref|ZP_11967621.1| ribosomal protein S4 [Escherichia coli 1.2741]
gi|417127285|ref|ZP_11974776.1| ribosomal protein S4 [Escherichia coli 97.0246]
gi|417135602|ref|ZP_11980387.1| ribosomal protein S4 [Escherichia coli 5.0588]
gi|417141239|ref|ZP_11984152.1| ribosomal protein S4 [Escherichia coli 97.0259]
gi|417147166|ref|ZP_11988013.1| ribosomal protein S4 [Escherichia coli 1.2264]
gi|417156754|ref|ZP_11994378.1| ribosomal protein S4 [Escherichia coli 96.0497]
gi|417163266|ref|ZP_11998596.1| ribosomal protein S4 [Escherichia coli 99.0741]
gi|417173893|ref|ZP_12003689.1| ribosomal protein S4 [Escherichia coli 3.2608]
gi|417184417|ref|ZP_12010109.1| ribosomal protein S4 [Escherichia coli 93.0624]
gi|417197521|ref|ZP_12016455.1| ribosomal protein S4 [Escherichia coli 4.0522]
gi|417211228|ref|ZP_12021645.1| ribosomal protein S4 [Escherichia coli JB1-95]
gi|417221476|ref|ZP_12024916.1| ribosomal protein S4 [Escherichia coli 96.154]
gi|417240723|ref|ZP_12036913.1| ribosomal protein S4 [Escherichia coli 9.0111]
gi|417249387|ref|ZP_12041171.1| ribosomal protein S4 [Escherichia coli 4.0967]
gi|417264374|ref|ZP_12051768.1| ribosomal protein S4 [Escherichia coli 2.3916]
gi|417267266|ref|ZP_12054627.1| ribosomal protein S4 [Escherichia coli 3.3884]
gi|417271655|ref|ZP_12059004.1| ribosomal protein S4 [Escherichia coli 2.4168]
gi|417275979|ref|ZP_12063311.1| ribosomal protein S4 [Escherichia coli 3.2303]
gi|417280675|ref|ZP_12067975.1| ribosomal protein S4 [Escherichia coli 3003]
gi|417286159|ref|ZP_12073450.1| ribosomal protein S4 [Escherichia coli TW07793]
gi|417292178|ref|ZP_12079459.1| ribosomal protein S4 [Escherichia coli B41]
gi|417297314|ref|ZP_12084561.1| ribosomal protein S4 [Escherichia coli 900105 (10e)]
gi|417582903|ref|ZP_12233703.1| ribosomal protein S4 [Escherichia coli STEC_B2F1]
gi|417588398|ref|ZP_12239161.1| ribosomal protein S4 [Escherichia coli STEC_C165-02]
gi|417605406|ref|ZP_12255956.1| ribosomal protein S4 [Escherichia coli STEC_DG131-3]
gi|417619900|ref|ZP_12270305.1| ribosomal protein S4 [Escherichia coli G58-1]
gi|417625375|ref|ZP_12275666.1| ribosomal protein S4 [Escherichia coli STEC_H.1.8]
gi|417627059|ref|ZP_12277310.1| ribosomal protein S4 [Escherichia coli STEC_MHI813]
gi|417684148|ref|ZP_12333489.1| ribosomal protein S4 [Shigella boydii 3594-74]
gi|417806937|ref|ZP_12453869.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. LB226692]
gi|417834683|ref|ZP_12481125.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 01-09591]
gi|417866408|ref|ZP_12511449.1| rpsD [Escherichia coli O104:H4 str. C227-11]
gi|417946718|ref|ZP_12589929.1| 30S ribosomal protein S4 [Escherichia coli XH140A]
gi|417978390|ref|ZP_12619158.1| 30S ribosomal protein S4 [Escherichia coli XH001]
gi|418942244|ref|ZP_13495532.1| 30S ribosomal protein S4 [Escherichia coli O157:H43 str. T22]
gi|419036520|ref|ZP_13583596.1| ribosomal protein S4 [Escherichia coli DEC2D]
gi|419053062|ref|ZP_13599929.1| ribosomal protein S4 [Escherichia coli DEC3B]
gi|419083992|ref|ZP_13629419.1| ribosomal protein S4 [Escherichia coli DEC4A]
gi|419095240|ref|ZP_13640510.1| ribosomal protein S4 [Escherichia coli DEC4C]
gi|419112048|ref|ZP_13657094.1| ribosomal protein S4 [Escherichia coli DEC4F]
gi|419116831|ref|ZP_13661842.1| ribosomal protein S4 [Escherichia coli DEC5A]
gi|419122547|ref|ZP_13667489.1| ribosomal protein S4 [Escherichia coli DEC5B]
gi|419133399|ref|ZP_13678226.1| ribosomal protein S4 [Escherichia coli DEC5D]
gi|419155762|ref|ZP_13700318.1| ribosomal protein S4 [Escherichia coli DEC6C]
gi|419161098|ref|ZP_13705594.1| ribosomal protein S4 [Escherichia coli DEC6D]
gi|419199001|ref|ZP_13742295.1| ribosomal protein S4 [Escherichia coli DEC8A]
gi|419211756|ref|ZP_13754823.1| ribosomal protein S4 [Escherichia coli DEC8C]
gi|419241092|ref|ZP_13783782.1| ribosomal protein S4 [Escherichia coli DEC9C]
gi|419269277|ref|ZP_13811620.1| ribosomal protein S4 [Escherichia coli DEC10C]
gi|419279932|ref|ZP_13822174.1| ribosomal protein S4 [Escherichia coli DEC10E]
gi|419351504|ref|ZP_13892834.1| ribosomal protein S4 [Escherichia coli DEC13B]
gi|419702123|ref|ZP_14229719.1| 30S ribosomal protein S4 [Escherichia coli SCI-07]
gi|419813393|ref|ZP_14338241.1| 30S ribosomal protein S4 [Escherichia coli O32:H37 str. P4]
gi|419864000|ref|ZP_14386494.1| 30S ribosomal protein S4 [Escherichia coli O103:H25 str. CVM9340]
gi|419872185|ref|ZP_14394226.1| 30S ribosomal protein S4 [Escherichia coli O103:H2 str. CVM9450]
gi|419878370|ref|ZP_14399842.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9534]
gi|419879816|ref|ZP_14401240.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9545]
gi|419891897|ref|ZP_14411937.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9570]
gi|419897519|ref|ZP_14417103.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9574]
gi|419904388|ref|ZP_14423388.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM9942]
gi|419906943|ref|ZP_14425800.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM10026]
gi|419912474|ref|ZP_14430928.1| 30S ribosomal protein S4 [Escherichia coli KD1]
gi|419918760|ref|ZP_14436938.1| 30S ribosomal protein S4 [Escherichia coli KD2]
gi|419921297|ref|ZP_14439353.1| 30S ribosomal protein S4 [Escherichia coli 541-15]
gi|419926689|ref|ZP_14444437.1| 30S ribosomal protein S4 [Escherichia coli 541-1]
gi|419933809|ref|ZP_14450957.1| 30S ribosomal protein S4 [Escherichia coli 576-1]
gi|419940155|ref|ZP_14456908.1| 30S ribosomal protein S4 [Escherichia coli 75]
gi|419944189|ref|ZP_14460698.1| 30S ribosomal protein S4 [Escherichia coli HM605]
gi|419949221|ref|ZP_14465467.1| 30S ribosomal protein S4 [Escherichia coli CUMT8]
gi|420090414|ref|ZP_14602183.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9602]
gi|420096508|ref|ZP_14607877.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9634]
gi|420104535|ref|ZP_14615226.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9455]
gi|420111230|ref|ZP_14621074.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9553]
gi|420117562|ref|ZP_14626918.1| hypothetical protein ECO10021_28847 [Escherichia coli O26:H11 str.
CVM10021]
gi|420123463|ref|ZP_14632353.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM10030]
gi|420126545|ref|ZP_14635280.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM10224]
gi|420135665|ref|ZP_14643745.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM9952]
gi|420271951|ref|ZP_14774302.1| ribosomal protein S4 [Escherichia coli PA22]
gi|420277331|ref|ZP_14779611.1| ribosomal protein S4 [Escherichia coli PA40]
gi|421815686|ref|ZP_16251343.1| ribosomal protein S4 [Escherichia coli 8.0416]
gi|422333641|ref|ZP_16414650.1| 30S ribosomal protein S4 [Escherichia coli 4_1_47FAA]
gi|422354160|ref|ZP_16434903.1| ribosomal protein S4 [Escherichia coli MS 117-3]
gi|422361604|ref|ZP_16442221.1| ribosomal protein S4 [Escherichia coli MS 110-3]
gi|422364943|ref|ZP_16445452.1| ribosomal protein S4 [Escherichia coli MS 153-1]
gi|422369622|ref|ZP_16450021.1| ribosomal protein S4 [Escherichia coli MS 16-3]
gi|422373699|ref|ZP_16453998.1| ribosomal protein S4 [Escherichia coli MS 60-1]
gi|422379722|ref|ZP_16459908.1| ribosomal protein S4 [Escherichia coli MS 57-2]
gi|422751137|ref|ZP_16805046.1| ribosomal protein S4 [Escherichia coli H252]
gi|422757050|ref|ZP_16810872.1| ribosomal protein S4 [Escherichia coli H263]
gi|422763825|ref|ZP_16817579.1| ribosomal protein S4 [Escherichia coli E1167]
gi|422768916|ref|ZP_16822640.1| ribosomal protein S4 [Escherichia coli E1520]
gi|422773583|ref|ZP_16827267.1| ribosomal protein S4 [Escherichia coli E482]
gi|422778139|ref|ZP_16831790.1| ribosomal protein S4 [Escherichia coli H120]
gi|422784166|ref|ZP_16836949.1| ribosomal protein S4 [Escherichia coli TW10509]
gi|422788816|ref|ZP_16841551.1| ribosomal protein S4 [Escherichia coli H489]
gi|422793339|ref|ZP_16846035.1| ribosomal protein S4 [Escherichia coli TA007]
gi|422801234|ref|ZP_16849730.1| ribosomal protein S4 [Escherichia coli M863]
gi|422807230|ref|ZP_16855660.1| ribosomal protein S4 [Escherichia fergusonii B253]
gi|422818456|ref|ZP_16866668.1| 30S ribosomal protein S4 [Escherichia coli M919]
gi|422831902|ref|ZP_16880033.1| 30S ribosomal protein S4 [Escherichia coli B093]
gi|422836864|ref|ZP_16884898.1| 30S ribosomal protein S4 [Escherichia coli E101]
gi|422841305|ref|ZP_16889274.1| 30S ribosomal protein S4 [Escherichia coli H397]
gi|422960842|ref|ZP_16972035.1| 30S ribosomal protein S4 [Escherichia coli H494]
gi|422973950|ref|ZP_16976047.1| 30S ribosomal protein S4 [Escherichia coli TA124]
gi|422989487|ref|ZP_16980259.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. C227-11]
gi|422996382|ref|ZP_16987145.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. C236-11]
gi|423001532|ref|ZP_16992285.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 09-7901]
gi|423005191|ref|ZP_16995936.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 04-8351]
gi|423011697|ref|ZP_17002429.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-3677]
gi|423020924|ref|ZP_17011631.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4404]
gi|423026089|ref|ZP_17016784.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4522]
gi|423031908|ref|ZP_17022594.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4623]
gi|423034780|ref|ZP_17025458.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423039908|ref|ZP_17030577.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423046592|ref|ZP_17037251.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055129|ref|ZP_17043935.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057121|ref|ZP_17045920.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423702798|ref|ZP_17677230.1| 30S ribosomal protein S4 [Escherichia coli H730]
gi|423707583|ref|ZP_17681963.1| 30S ribosomal protein S4 [Escherichia coli B799]
gi|423727250|ref|ZP_17701161.1| ribosomal protein S4 [Escherichia coli PA31]
gi|424085908|ref|ZP_17822394.1| ribosomal protein S4 [Escherichia coli FDA517]
gi|424092307|ref|ZP_17828236.1| ribosomal protein S4 [Escherichia coli FRIK1996]
gi|424105192|ref|ZP_17839934.1| ribosomal protein S4 [Escherichia coli FRIK1990]
gi|424130116|ref|ZP_17863018.1| ribosomal protein S4 [Escherichia coli PA9]
gi|424136438|ref|ZP_17868885.1| ribosomal protein S4 [Escherichia coli PA10]
gi|424142991|ref|ZP_17874857.1| ribosomal protein S4 [Escherichia coli PA14]
gi|424457867|ref|ZP_17908976.1| ribosomal protein S4 [Escherichia coli PA33]
gi|424470629|ref|ZP_17920440.1| ribosomal protein S4 [Escherichia coli PA41]
gi|424516036|ref|ZP_17960667.1| ribosomal protein S4 [Escherichia coli TW14313]
gi|424522233|ref|ZP_17966344.1| ribosomal protein S4 [Escherichia coli TW14301]
gi|424534257|ref|ZP_17977600.1| ribosomal protein S4 [Escherichia coli EC4422]
gi|424546441|ref|ZP_17988807.1| ribosomal protein S4 [Escherichia coli EC4402]
gi|424571318|ref|ZP_18011861.1| ribosomal protein S4 [Escherichia coli EC4448]
gi|424577473|ref|ZP_18017521.1| ribosomal protein S4 [Escherichia coli EC1845]
gi|424748560|ref|ZP_18176700.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424766959|ref|ZP_18194296.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424769961|ref|ZP_18197177.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424839528|ref|ZP_18264165.1| 30S ribosomal protein S4 [Shigella flexneri 5a str. M90T]
gi|425099966|ref|ZP_18502694.1| ribosomal protein S4 [Escherichia coli 3.4870]
gi|425106063|ref|ZP_18508375.1| ribosomal protein S4 [Escherichia coli 5.2239]
gi|425112074|ref|ZP_18513990.1| ribosomal protein S4 [Escherichia coli 6.0172]
gi|425116850|ref|ZP_18518638.1| ribosomal protein S4 [Escherichia coli 8.0566]
gi|425127998|ref|ZP_18529161.1| ribosomal protein S4 [Escherichia coli 8.0586]
gi|425146026|ref|ZP_18546014.1| ribosomal protein S4 [Escherichia coli 10.0869]
gi|425158019|ref|ZP_18557278.1| ribosomal protein S4 [Escherichia coli PA34]
gi|425164368|ref|ZP_18563250.1| ribosomal protein S4 [Escherichia coli FDA506]
gi|425170112|ref|ZP_18568580.1| ribosomal protein S4 [Escherichia coli FDA507]
gi|425182215|ref|ZP_18579905.1| ribosomal protein S4 [Escherichia coli FRIK1999]
gi|425188481|ref|ZP_18585749.1| ribosomal protein S4 [Escherichia coli FRIK1997]
gi|425201723|ref|ZP_18597925.1| ribosomal protein S4 [Escherichia coli NE037]
gi|425208108|ref|ZP_18603900.1| ribosomal protein S4 [Escherichia coli FRIK2001]
gi|425213863|ref|ZP_18609258.1| ribosomal protein S4 [Escherichia coli PA4]
gi|425269177|ref|ZP_18660802.1| ribosomal protein S4 [Escherichia coli 5412]
gi|425279683|ref|ZP_18670909.1| ribosomal protein S4 [Escherichia coli ARS4.2123]
gi|425302155|ref|ZP_18692038.1| ribosomal protein S4 [Escherichia coli 07798]
gi|425313322|ref|ZP_18702496.1| ribosomal protein S4 [Escherichia coli EC1735]
gi|425331766|ref|ZP_18719597.1| ribosomal protein S4 [Escherichia coli EC1846]
gi|425344256|ref|ZP_18731141.1| ribosomal protein S4 [Escherichia coli EC1848]
gi|425374858|ref|ZP_18759495.1| ribosomal protein S4 [Escherichia coli EC1864]
gi|425406626|ref|ZP_18788843.1| ribosomal protein S4 [Escherichia coli EC1870]
gi|427806489|ref|ZP_18973556.1| 30S ribosomal subunit protein S4 [Escherichia coli chi7122]
gi|427811079|ref|ZP_18978144.1| 30S ribosomal subunit protein S4 [Escherichia coli]
gi|428949031|ref|ZP_19021302.1| ribosomal protein S4 [Escherichia coli 88.1467]
gi|428961867|ref|ZP_19033126.1| ribosomal protein S4 [Escherichia coli 89.0511]
gi|429010992|ref|ZP_19078367.1| ribosomal protein S4 [Escherichia coli 95.1288]
gi|429016601|ref|ZP_19083478.1| ribosomal protein S4 [Escherichia coli 95.0943]
gi|429034675|ref|ZP_19100192.1| ribosomal protein S4 [Escherichia coli 96.0939]
gi|429040761|ref|ZP_19105856.1| ribosomal protein S4 [Escherichia coli 96.0932]
gi|429052792|ref|ZP_19117345.1| ribosomal protein S4 [Escherichia coli 97.0003]
gi|429057492|ref|ZP_19121771.1| ribosomal protein S4 [Escherichia coli 97.1742]
gi|429062982|ref|ZP_19126966.1| ribosomal protein S4 [Escherichia coli 97.0007]
gi|429069217|ref|ZP_19132668.1| ribosomal protein S4 [Escherichia coli 99.0672]
gi|429075874|ref|ZP_19139112.1| ribosomal protein S4 [Escherichia coli 99.0678]
gi|429720953|ref|ZP_19255874.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772850|ref|ZP_19304868.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02030]
gi|429778216|ref|ZP_19310184.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02033-1]
gi|429786522|ref|ZP_19318415.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02092]
gi|429787466|ref|ZP_19319356.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02093]
gi|429793262|ref|ZP_19325108.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02281]
gi|429799842|ref|ZP_19331635.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02318]
gi|429803457|ref|ZP_19335215.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02913]
gi|429808098|ref|ZP_19339818.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-03439]
gi|429813798|ref|ZP_19345474.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-04080]
gi|429819008|ref|ZP_19350640.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-03943]
gi|429828401|ref|ZP_19359418.1| ribosomal protein S4 [Escherichia coli 96.0109]
gi|429834837|ref|ZP_19365135.1| ribosomal protein S4 [Escherichia coli 97.0010]
gi|429905357|ref|ZP_19371333.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909494|ref|ZP_19375456.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915364|ref|ZP_19381310.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920411|ref|ZP_19386338.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926215|ref|ZP_19392126.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930150|ref|ZP_19396050.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936688|ref|ZP_19402573.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942370|ref|ZP_19408242.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945053|ref|ZP_19410913.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952608|ref|ZP_19418453.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec12-0465]
gi|429955963|ref|ZP_19421793.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec12-0466]
gi|432355290|ref|ZP_19598557.1| 30S ribosomal protein S4 [Escherichia coli KTE2]
gi|432359744|ref|ZP_19602957.1| 30S ribosomal protein S4 [Escherichia coli KTE4]
gi|432364542|ref|ZP_19607697.1| 30S ribosomal protein S4 [Escherichia coli KTE5]
gi|432366743|ref|ZP_19609860.1| 30S ribosomal protein S4 [Escherichia coli KTE10]
gi|432373866|ref|ZP_19616897.1| 30S ribosomal protein S4 [Escherichia coli KTE11]
gi|432378471|ref|ZP_19621454.1| 30S ribosomal protein S4 [Escherichia coli KTE12]
gi|432383196|ref|ZP_19626121.1| 30S ribosomal protein S4 [Escherichia coli KTE15]
gi|432389050|ref|ZP_19631930.1| 30S ribosomal protein S4 [Escherichia coli KTE16]
gi|432393888|ref|ZP_19636710.1| 30S ribosomal protein S4 [Escherichia coli KTE21]
gi|432399243|ref|ZP_19642017.1| 30S ribosomal protein S4 [Escherichia coli KTE25]
gi|432403665|ref|ZP_19646409.1| 30S ribosomal protein S4 [Escherichia coli KTE26]
gi|432408368|ref|ZP_19651071.1| 30S ribosomal protein S4 [Escherichia coli KTE28]
gi|432413518|ref|ZP_19656172.1| 30S ribosomal protein S4 [Escherichia coli KTE39]
gi|432418818|ref|ZP_19661411.1| 30S ribosomal protein S4 [Escherichia coli KTE44]
gi|432423702|ref|ZP_19666240.1| 30S ribosomal protein S4 [Escherichia coli KTE178]
gi|432427926|ref|ZP_19670409.1| 30S ribosomal protein S4 [Escherichia coli KTE181]
gi|432433509|ref|ZP_19675933.1| 30S ribosomal protein S4 [Escherichia coli KTE187]
gi|432438105|ref|ZP_19680488.1| 30S ribosomal protein S4 [Escherichia coli KTE188]
gi|432442781|ref|ZP_19685116.1| 30S ribosomal protein S4 [Escherichia coli KTE189]
gi|432447901|ref|ZP_19690197.1| 30S ribosomal protein S4 [Escherichia coli KTE191]
gi|432451528|ref|ZP_19693785.1| 30S ribosomal protein S4 [Escherichia coli KTE193]
gi|432458417|ref|ZP_19700593.1| 30S ribosomal protein S4 [Escherichia coli KTE201]
gi|432462630|ref|ZP_19704763.1| 30S ribosomal protein S4 [Escherichia coli KTE204]
gi|432467608|ref|ZP_19709686.1| 30S ribosomal protein S4 [Escherichia coli KTE205]
gi|432472643|ref|ZP_19714680.1| 30S ribosomal protein S4 [Escherichia coli KTE206]
gi|432477622|ref|ZP_19719611.1| 30S ribosomal protein S4 [Escherichia coli KTE208]
gi|432482617|ref|ZP_19724567.1| 30S ribosomal protein S4 [Escherichia coli KTE210]
gi|432487053|ref|ZP_19728961.1| 30S ribosomal protein S4 [Escherichia coli KTE212]
gi|432491070|ref|ZP_19732933.1| 30S ribosomal protein S4 [Escherichia coli KTE213]
gi|432497410|ref|ZP_19739202.1| 30S ribosomal protein S4 [Escherichia coli KTE214]
gi|432501851|ref|ZP_19743602.1| 30S ribosomal protein S4 [Escherichia coli KTE216]
gi|432506168|ref|ZP_19747887.1| 30S ribosomal protein S4 [Escherichia coli KTE220]
gi|432515687|ref|ZP_19752902.1| 30S ribosomal protein S4 [Escherichia coli KTE224]
gi|432519484|ref|ZP_19756663.1| 30S ribosomal protein S4 [Escherichia coli KTE228]
gi|432525623|ref|ZP_19762741.1| 30S ribosomal protein S4 [Escherichia coli KTE230]
gi|432528150|ref|ZP_19765226.1| 30S ribosomal protein S4 [Escherichia coli KTE233]
gi|432535661|ref|ZP_19772620.1| 30S ribosomal protein S4 [Escherichia coli KTE234]
gi|432539642|ref|ZP_19776535.1| 30S ribosomal protein S4 [Escherichia coli KTE235]
gi|432545027|ref|ZP_19781861.1| 30S ribosomal protein S4 [Escherichia coli KTE236]
gi|432550509|ref|ZP_19787268.1| 30S ribosomal protein S4 [Escherichia coli KTE237]
gi|432555380|ref|ZP_19792098.1| 30S ribosomal protein S4 [Escherichia coli KTE47]
gi|432560564|ref|ZP_19797219.1| 30S ribosomal protein S4 [Escherichia coli KTE49]
gi|432565662|ref|ZP_19802222.1| 30S ribosomal protein S4 [Escherichia coli KTE51]
gi|432570524|ref|ZP_19807030.1| 30S ribosomal protein S4 [Escherichia coli KTE53]
gi|432575529|ref|ZP_19812000.1| 30S ribosomal protein S4 [Escherichia coli KTE55]
gi|432577523|ref|ZP_19813972.1| 30S ribosomal protein S4 [Escherichia coli KTE56]
gi|432584821|ref|ZP_19821212.1| 30S ribosomal protein S4 [Escherichia coli KTE57]
gi|432589674|ref|ZP_19826026.1| 30S ribosomal protein S4 [Escherichia coli KTE58]
gi|432594490|ref|ZP_19830802.1| 30S ribosomal protein S4 [Escherichia coli KTE60]
gi|432599543|ref|ZP_19835813.1| 30S ribosomal protein S4 [Escherichia coli KTE62]
gi|432604121|ref|ZP_19840351.1| 30S ribosomal protein S4 [Escherichia coli KTE66]
gi|432609330|ref|ZP_19845511.1| 30S ribosomal protein S4 [Escherichia coli KTE67]
gi|432613302|ref|ZP_19849459.1| 30S ribosomal protein S4 [Escherichia coli KTE72]
gi|432618533|ref|ZP_19854637.1| 30S ribosomal protein S4 [Escherichia coli KTE75]
gi|432623651|ref|ZP_19859668.1| 30S ribosomal protein S4 [Escherichia coli KTE76]
gi|432628924|ref|ZP_19864892.1| 30S ribosomal protein S4 [Escherichia coli KTE77]
gi|432633162|ref|ZP_19869082.1| 30S ribosomal protein S4 [Escherichia coli KTE80]
gi|432638497|ref|ZP_19874362.1| 30S ribosomal protein S4 [Escherichia coli KTE81]
gi|432642852|ref|ZP_19878677.1| 30S ribosomal protein S4 [Escherichia coli KTE83]
gi|432647969|ref|ZP_19883754.1| 30S ribosomal protein S4 [Escherichia coli KTE86]
gi|432652889|ref|ZP_19888634.1| 30S ribosomal protein S4 [Escherichia coli KTE87]
gi|432657532|ref|ZP_19893228.1| 30S ribosomal protein S4 [Escherichia coli KTE93]
gi|432662501|ref|ZP_19898135.1| 30S ribosomal protein S4 [Escherichia coli KTE111]
gi|432667849|ref|ZP_19903421.1| 30S ribosomal protein S4 [Escherichia coli KTE116]
gi|432672380|ref|ZP_19907903.1| 30S ribosomal protein S4 [Escherichia coli KTE119]
gi|432676413|ref|ZP_19911861.1| 30S ribosomal protein S4 [Escherichia coli KTE142]
gi|432682028|ref|ZP_19917386.1| 30S ribosomal protein S4 [Escherichia coli KTE143]
gi|432687109|ref|ZP_19922399.1| 30S ribosomal protein S4 [Escherichia coli KTE156]
gi|432688566|ref|ZP_19923836.1| 30S ribosomal protein S4 [Escherichia coli KTE161]
gi|432696161|ref|ZP_19931353.1| 30S ribosomal protein S4 [Escherichia coli KTE162]
gi|432700813|ref|ZP_19935957.1| 30S ribosomal protein S4 [Escherichia coli KTE169]
gi|432706030|ref|ZP_19941125.1| 30S ribosomal protein S4 [Escherichia coli KTE171]
gi|432707638|ref|ZP_19942714.1| 30S ribosomal protein S4 [Escherichia coli KTE6]
gi|432715143|ref|ZP_19950170.1| 30S ribosomal protein S4 [Escherichia coli KTE8]
gi|432720418|ref|ZP_19955382.1| 30S ribosomal protein S4 [Escherichia coli KTE9]
gi|432724761|ref|ZP_19959674.1| 30S ribosomal protein S4 [Escherichia coli KTE17]
gi|432729344|ref|ZP_19964218.1| 30S ribosomal protein S4 [Escherichia coli KTE18]
gi|432734047|ref|ZP_19968871.1| 30S ribosomal protein S4 [Escherichia coli KTE45]
gi|432738792|ref|ZP_19973526.1| 30S ribosomal protein S4 [Escherichia coli KTE42]
gi|432743031|ref|ZP_19977745.1| 30S ribosomal protein S4 [Escherichia coli KTE23]
gi|432747275|ref|ZP_19981936.1| 30S ribosomal protein S4 [Escherichia coli KTE43]
gi|432751762|ref|ZP_19986341.1| 30S ribosomal protein S4 [Escherichia coli KTE29]
gi|432756224|ref|ZP_19990768.1| 30S ribosomal protein S4 [Escherichia coli KTE22]
gi|432761132|ref|ZP_19995622.1| 30S ribosomal protein S4 [Escherichia coli KTE46]
gi|432766690|ref|ZP_20001105.1| 30S ribosomal protein S4 [Escherichia coli KTE48]
gi|432767655|ref|ZP_20002048.1| 30S ribosomal protein S4 [Escherichia coli KTE50]
gi|432772043|ref|ZP_20006357.1| 30S ribosomal protein S4 [Escherichia coli KTE54]
gi|432780304|ref|ZP_20014524.1| 30S ribosomal protein S4 [Escherichia coli KTE59]
gi|432785262|ref|ZP_20019439.1| 30S ribosomal protein S4 [Escherichia coli KTE63]
gi|432789297|ref|ZP_20023424.1| 30S ribosomal protein S4 [Escherichia coli KTE65]
gi|432794508|ref|ZP_20028589.1| 30S ribosomal protein S4 [Escherichia coli KTE78]
gi|432796024|ref|ZP_20030064.1| 30S ribosomal protein S4 [Escherichia coli KTE79]
gi|432803478|ref|ZP_20037430.1| 30S ribosomal protein S4 [Escherichia coli KTE84]
gi|432807545|ref|ZP_20041459.1| 30S ribosomal protein S4 [Escherichia coli KTE91]
gi|432811018|ref|ZP_20044875.1| 30S ribosomal protein S4 [Escherichia coli KTE101]
gi|432817058|ref|ZP_20050818.1| 30S ribosomal protein S4 [Escherichia coli KTE115]
gi|432822732|ref|ZP_20056420.1| 30S ribosomal protein S4 [Escherichia coli KTE118]
gi|432824186|ref|ZP_20057856.1| 30S ribosomal protein S4 [Escherichia coli KTE123]
gi|432828921|ref|ZP_20062538.1| 30S ribosomal protein S4 [Escherichia coli KTE135]
gi|432836245|ref|ZP_20069777.1| 30S ribosomal protein S4 [Escherichia coli KTE136]
gi|432841097|ref|ZP_20074556.1| 30S ribosomal protein S4 [Escherichia coli KTE140]
gi|432846376|ref|ZP_20079018.1| 30S ribosomal protein S4 [Escherichia coli KTE141]
gi|432854701|ref|ZP_20082972.1| 30S ribosomal protein S4 [Escherichia coli KTE144]
gi|432865352|ref|ZP_20088449.1| 30S ribosomal protein S4 [Escherichia coli KTE146]
gi|432870782|ref|ZP_20091202.1| 30S ribosomal protein S4 [Escherichia coli KTE147]
gi|432877359|ref|ZP_20095079.1| 30S ribosomal protein S4 [Escherichia coli KTE154]
gi|432888628|ref|ZP_20102341.1| 30S ribosomal protein S4 [Escherichia coli KTE158]
gi|432890742|ref|ZP_20103597.1| 30S ribosomal protein S4 [Escherichia coli KTE165]
gi|432900561|ref|ZP_20110940.1| 30S ribosomal protein S4 [Escherichia coli KTE192]
gi|432907001|ref|ZP_20115477.1| 30S ribosomal protein S4 [Escherichia coli KTE194]
gi|432914867|ref|ZP_20120194.1| 30S ribosomal protein S4 [Escherichia coli KTE190]
gi|432922428|ref|ZP_20125272.1| 30S ribosomal protein S4 [Escherichia coli KTE173]
gi|432929158|ref|ZP_20130208.1| 30S ribosomal protein S4 [Escherichia coli KTE175]
gi|432930667|ref|ZP_20131075.1| 30S ribosomal protein S4 [Escherichia coli KTE184]
gi|432940106|ref|ZP_20138020.1| 30S ribosomal protein S4 [Escherichia coli KTE183]
gi|432949491|ref|ZP_20144272.1| 30S ribosomal protein S4 [Escherichia coli KTE196]
gi|432957147|ref|ZP_20148650.1| 30S ribosomal protein S4 [Escherichia coli KTE197]
gi|432963812|ref|ZP_20153159.1| 30S ribosomal protein S4 [Escherichia coli KTE202]
gi|432965067|ref|ZP_20153991.1| 30S ribosomal protein S4 [Escherichia coli KTE203]
gi|432973572|ref|ZP_20162415.1| 30S ribosomal protein S4 [Escherichia coli KTE207]
gi|432975497|ref|ZP_20164331.1| 30S ribosomal protein S4 [Escherichia coli KTE209]
gi|432982740|ref|ZP_20171510.1| 30S ribosomal protein S4 [Escherichia coli KTE211]
gi|432987144|ref|ZP_20175856.1| 30S ribosomal protein S4 [Escherichia coli KTE215]
gi|432992395|ref|ZP_20181053.1| 30S ribosomal protein S4 [Escherichia coli KTE217]
gi|432997057|ref|ZP_20185639.1| 30S ribosomal protein S4 [Escherichia coli KTE218]
gi|433001654|ref|ZP_20190172.1| 30S ribosomal protein S4 [Escherichia coli KTE223]
gi|433006877|ref|ZP_20195300.1| 30S ribosomal protein S4 [Escherichia coli KTE227]
gi|433009492|ref|ZP_20197904.1| 30S ribosomal protein S4 [Escherichia coli KTE229]
gi|433015596|ref|ZP_20203930.1| 30S ribosomal protein S4 [Escherichia coli KTE104]
gi|433020427|ref|ZP_20208582.1| 30S ribosomal protein S4 [Escherichia coli KTE105]
gi|433025161|ref|ZP_20213134.1| 30S ribosomal protein S4 [Escherichia coli KTE106]
gi|433030207|ref|ZP_20218057.1| 30S ribosomal protein S4 [Escherichia coli KTE109]
gi|433035176|ref|ZP_20222874.1| 30S ribosomal protein S4 [Escherichia coli KTE112]
gi|433040295|ref|ZP_20227886.1| 30S ribosomal protein S4 [Escherichia coli KTE113]
gi|433044828|ref|ZP_20232314.1| 30S ribosomal protein S4 [Escherichia coli KTE117]
gi|433049731|ref|ZP_20237065.1| 30S ribosomal protein S4 [Escherichia coli KTE120]
gi|433054920|ref|ZP_20242086.1| 30S ribosomal protein S4 [Escherichia coli KTE122]
gi|433059777|ref|ZP_20246813.1| 30S ribosomal protein S4 [Escherichia coli KTE124]
gi|433064737|ref|ZP_20251647.1| 30S ribosomal protein S4 [Escherichia coli KTE125]
gi|433069611|ref|ZP_20256384.1| 30S ribosomal protein S4 [Escherichia coli KTE128]
gi|433074547|ref|ZP_20261188.1| 30S ribosomal protein S4 [Escherichia coli KTE129]
gi|433079482|ref|ZP_20266001.1| 30S ribosomal protein S4 [Escherichia coli KTE131]
gi|433084222|ref|ZP_20270669.1| 30S ribosomal protein S4 [Escherichia coli KTE133]
gi|433088946|ref|ZP_20275311.1| 30S ribosomal protein S4 [Escherichia coli KTE137]
gi|433093672|ref|ZP_20279928.1| 30S ribosomal protein S4 [Escherichia coli KTE138]
gi|433098096|ref|ZP_20284271.1| 30S ribosomal protein S4 [Escherichia coli KTE139]
gi|433102882|ref|ZP_20288954.1| 30S ribosomal protein S4 [Escherichia coli KTE145]
gi|433107544|ref|ZP_20293508.1| 30S ribosomal protein S4 [Escherichia coli KTE148]
gi|433112527|ref|ZP_20298382.1| 30S ribosomal protein S4 [Escherichia coli KTE150]
gi|433117172|ref|ZP_20302957.1| 30S ribosomal protein S4 [Escherichia coli KTE153]
gi|433121859|ref|ZP_20307519.1| 30S ribosomal protein S4 [Escherichia coli KTE157]
gi|433126861|ref|ZP_20312407.1| 30S ribosomal protein S4 [Escherichia coli KTE160]
gi|433131844|ref|ZP_20317273.1| 30S ribosomal protein S4 [Escherichia coli KTE163]
gi|433136532|ref|ZP_20321864.1| 30S ribosomal protein S4 [Escherichia coli KTE166]
gi|433140925|ref|ZP_20326170.1| 30S ribosomal protein S4 [Escherichia coli KTE167]
gi|433145900|ref|ZP_20331033.1| 30S ribosomal protein S4 [Escherichia coli KTE168]
gi|433150930|ref|ZP_20335930.1| 30S ribosomal protein S4 [Escherichia coli KTE174]
gi|433155442|ref|ZP_20340374.1| 30S ribosomal protein S4 [Escherichia coli KTE176]
gi|433160397|ref|ZP_20345223.1| 30S ribosomal protein S4 [Escherichia coli KTE177]
gi|433165283|ref|ZP_20350013.1| 30S ribosomal protein S4 [Escherichia coli KTE179]
gi|433170282|ref|ZP_20354902.1| 30S ribosomal protein S4 [Escherichia coli KTE180]
gi|433175177|ref|ZP_20359689.1| 30S ribosomal protein S4 [Escherichia coli KTE232]
gi|433180117|ref|ZP_20364502.1| 30S ribosomal protein S4 [Escherichia coli KTE82]
gi|433185010|ref|ZP_20369247.1| 30S ribosomal protein S4 [Escherichia coli KTE85]
gi|433190101|ref|ZP_20374189.1| 30S ribosomal protein S4 [Escherichia coli KTE88]
gi|433195331|ref|ZP_20379308.1| 30S ribosomal protein S4 [Escherichia coli KTE90]
gi|433200040|ref|ZP_20383927.1| 30S ribosomal protein S4 [Escherichia coli KTE94]
gi|433205013|ref|ZP_20388763.1| 30S ribosomal protein S4 [Escherichia coli KTE95]
gi|433209419|ref|ZP_20393086.1| 30S ribosomal protein S4 [Escherichia coli KTE97]
gi|433214270|ref|ZP_20397852.1| 30S ribosomal protein S4 [Escherichia coli KTE99]
gi|433325895|ref|ZP_20402901.1| 30S ribosomal protein S4 [Escherichia coli J96]
gi|443619359|ref|YP_007383215.1| 30S ribosomal protein S4 [Escherichia coli APEC O78]
gi|444926915|ref|ZP_21246188.1| ribosomal protein S4 [Escherichia coli 09BKT078844]
gi|444949086|ref|ZP_21267385.1| ribosomal protein S4 [Escherichia coli 99.0839]
gi|444972204|ref|ZP_21289529.1| ribosomal protein S4 [Escherichia coli 99.1793]
gi|444976641|ref|ZP_21293737.1| ribosomal protein S4 [Escherichia coli 99.1805]
gi|444982694|ref|ZP_21299589.1| ribosomal protein S4 [Escherichia coli ATCC 700728]
gi|444987519|ref|ZP_21304291.1| ribosomal protein S4 [Escherichia coli PA11]
gi|444994071|ref|ZP_21310687.1| ribosomal protein S4 [Escherichia coli PA13]
gi|445015546|ref|ZP_21331623.1| ribosomal protein S4 [Escherichia coli PA48]
gi|445052694|ref|ZP_21367714.1| ribosomal protein S4 [Escherichia coli 95.0083]
gi|450193537|ref|ZP_21892044.1| 30S ribosomal protein S4 [Escherichia coli SEPT362]
gi|450222946|ref|ZP_21897005.1| 30S ribosomal protein S4 [Escherichia coli O08]
gi|450251216|ref|ZP_21901764.1| 30S ribosomal protein S4 [Escherichia coli S17]
gi|452971232|ref|ZP_21969459.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. EC4009]
gi|62288978|sp|P0A7V8.2|RS4_ECOLI RecName: Full=30S ribosomal protein S4
gi|62288979|sp|P0A7V9.2|RS4_ECOL6 RecName: Full=30S ribosomal protein S4
gi|62288980|sp|P0A7W0.2|RS4_ECO57 RecName: Full=30S ribosomal protein S4
gi|90101715|sp|Q31VY0.1|RS4_SHIBS RecName: Full=30S ribosomal protein S4
gi|90101716|sp|Q32B55.1|RS4_SHIDS RecName: Full=30S ribosomal protein S4
gi|90101726|sp|Q3YWW3.1|RS4_SHISS RecName: Full=30S ribosomal protein S4
gi|122957945|sp|Q0TCG5.1|RS4_ECOL5 RecName: Full=30S ribosomal protein S4
gi|123047859|sp|Q0T006.1|RS4_SHIF8 RecName: Full=30S ribosomal protein S4
gi|123387796|sp|Q1R636.1|RS4_ECOUT RecName: Full=30S ribosomal protein S4
gi|152060947|sp|A1AGI7.1|RS4_ECOK1 RecName: Full=30S ribosomal protein S4
gi|171855222|sp|A7ZSI5.1|RS4_ECO24 RecName: Full=30S ribosomal protein S4
gi|172044361|sp|A8A5A1.1|RS4_ECOHS RecName: Full=30S ribosomal protein S4
gi|172045593|sp|A8AQJ1.1|RS4_CITK8 RecName: Full=30S ribosomal protein S4
gi|189045379|sp|B1IQ03.1|RS4_ECOLC RecName: Full=30S ribosomal protein S4
gi|226695077|sp|B2U2R5.1|RS4_SHIB3 RecName: Full=30S ribosomal protein S4
gi|226699056|sp|B7NLL6.1|RS4_ECO7I RecName: Full=30S ribosomal protein S4
gi|226699057|sp|B7M102.1|RS4_ECO8A RecName: Full=30S ribosomal protein S4
gi|226699058|sp|B1X6E8.1|RS4_ECODH RecName: Full=30S ribosomal protein S4
gi|226699059|sp|B7NDR8.1|RS4_ECOLU RecName: Full=30S ribosomal protein S4
gi|226699060|sp|B6I210.1|RS4_ECOSE RecName: Full=30S ribosomal protein S4
gi|226699061|sp|B1LHB0.1|RS4_ECOSM RecName: Full=30S ribosomal protein S4
gi|226699064|sp|B7LRR3.1|RS4_ESCF3 RecName: Full=30S ribosomal protein S4
gi|226732180|sp|B7MCR2.1|RS4_ECO45 RecName: Full=30S ribosomal protein S4
gi|226732181|sp|B5YT15.1|RS4_ECO5E RecName: Full=30S ribosomal protein S4
gi|254764587|sp|B7UK20.1|RS4_ECO27 RecName: Full=30S ribosomal protein S4
gi|254764588|sp|B7LHZ8.1|RS4_ECO55 RecName: Full=30S ribosomal protein S4
gi|254764589|sp|B7N181.1|RS4_ECO81 RecName: Full=30S ribosomal protein S4
gi|259495276|sp|C4ZUF1.1|RS4_ECOBW RecName: Full=30S ribosomal protein S4
gi|116666551|pdb|1VS5|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|116666603|pdb|1VS7|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|256032366|pdb|3E1A|R Chain R, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
gi|256032423|pdb|3E1C|R Chain R, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
gi|257097325|pdb|3I1M|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
gi|257097377|pdb|3I1O|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
gi|257097429|pdb|3I1Q|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
gi|257097483|pdb|3I1S|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
gi|257097537|pdb|3I1Z|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
gi|257097592|pdb|3I21|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
gi|290560310|pdb|3KC4|D Chain D, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
gi|308198690|pdb|3OR9|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
gi|308198711|pdb|3ORA|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
gi|326634282|pdb|3IZV|H Chain H, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
gi|326634307|pdb|3IZW|H Chain H, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
gi|371927497|pdb|3SFS|D Chain D, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
gi|371927622|pdb|3UOQ|D Chain D, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
gi|402550587|pdb|4GAQ|D Chain D, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
gi|402550641|pdb|4GAS|D Chain D, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
gi|12517925|gb|AAG58417.1|AE005556_10 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str.
EDL933]
gi|26110309|gb|AAN82495.1|AE016767_255 30S ribosomal protein S4 [Escherichia coli CFT073]
gi|42798|emb|CAA26394.1| unnamed protein product [Escherichia coli]
gi|606231|gb|AAA58094.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12
substr. MG1655]
gi|1789691|gb|AAC76321.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12
substr. MG1655]
gi|13363634|dbj|BAB37584.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str.
Sakai]
gi|73857292|gb|AAZ89999.1| 30S ribosomal subunit protein S4 [Shigella sonnei Ss046]
gi|81242740|gb|ABB63450.1| 30S ribosomal subunit protein S4 [Shigella dysenteriae Sd197]
gi|81247070|gb|ABB67778.1| 30S ribosomal subunit protein S4 [Shigella boydii Sb227]
gi|85676745|dbj|BAE77995.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K12 substr.
W3110]
gi|91074297|gb|ABE09178.1| 30S ribosomal subunit protein S4 [Escherichia coli UTI89]
gi|110345127|gb|ABG71364.1| 30S ribosomal protein S4 [Escherichia coli 536]
gi|110616692|gb|ABF05359.1| 30S ribosomal subunit protein S4 [Shigella flexneri 5 str. 8401]
gi|115514702|gb|ABJ02777.1| 30S ribosomal subunit protein S4 [Escherichia coli APEC O1]
gi|157068450|gb|ABV07705.1| ribosomal protein S4 [Escherichia coli HS]
gi|157078822|gb|ABV18530.1| ribosomal protein S4 [Escherichia coli E24377A]
gi|157086076|gb|ABV15754.1| hypothetical protein CKO_04709 [Citrobacter koseri ATCC BAA-895]
gi|169753396|gb|ACA76095.1| ribosomal protein S4 [Escherichia coli ATCC 8739]
gi|169890651|gb|ACB04358.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12
substr. DH10B]
gi|170121663|gb|EDS90594.1| ribosomal protein S4 [Escherichia albertii TW07627]
gi|170521050|gb|ACB19228.1| ribosomal protein S4 [Escherichia coli SMS-3-5]
gi|187429640|gb|ACD08914.1| ribosomal protein S4 [Shigella boydii CDC 3083-94]
gi|187767007|gb|EDU30851.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4196]
gi|188013855|gb|EDU51977.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4113]
gi|188491064|gb|EDU66167.1| ribosomal protein S4 [Escherichia coli 53638]
gi|188998873|gb|EDU67859.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4076]
gi|189354671|gb|EDU73090.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4401]
gi|189361855|gb|EDU80274.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4486]
gi|189365129|gb|EDU83545.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4501]
gi|189374088|gb|EDU92504.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC869]
gi|189375351|gb|EDU93767.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC508]
gi|190905255|gb|EDV64893.1| ribosomal protein S4 [Escherichia coli F11]
gi|192925868|gb|EDV80518.1| ribosomal protein S4 [Escherichia coli E22]
gi|192955133|gb|EDV85627.1| ribosomal protein S4 [Escherichia coli E110019]
gi|194411669|gb|EDX27996.1| ribosomal protein S4 [Escherichia coli B171]
gi|194416688|gb|EDX32819.1| ribosomal protein S4 [Shigella dysenteriae 1012]
gi|194421045|gb|EDX37074.1| ribosomal protein S4 [Escherichia coli 101-1]
gi|208726341|gb|EDZ75942.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4206]
gi|208734198|gb|EDZ82885.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4045]
gi|208739629|gb|EDZ87311.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4042]
gi|209157700|gb|ACI35133.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4115]
gi|209757278|gb|ACI76951.1| 30S ribosomal subunit protein S4 [Escherichia coli]
gi|209757280|gb|ACI76952.1| 30S ribosomal subunit protein S4 [Escherichia coli]
gi|209757282|gb|ACI76953.1| 30S ribosomal subunit protein S4 [Escherichia coli]
gi|209757284|gb|ACI76954.1| 30S ribosomal subunit protein S4 [Escherichia coli]
gi|209757286|gb|ACI76955.1| 30S ribosomal subunit protein S4 [Escherichia coli]
gi|209914021|dbj|BAG79095.1| 30S ribosomal protein S4 [Escherichia coli SE11]
gi|215266668|emb|CAS11107.1| 30S ribosomal subunit protein S4 [Escherichia coli O127:H6 str.
E2348/69]
gi|217321311|gb|EEC29735.1| ribosomal protein S4 [Escherichia coli O157:H7 str. TW14588]
gi|218353721|emb|CAU99998.1| 30S ribosomal subunit protein S4 [Escherichia coli 55989]
gi|218358113|emb|CAQ90760.1| 30S ribosomal subunit protein S4 [Escherichia fergusonii ATCC
35469]
gi|218362622|emb|CAR00248.1| 30S ribosomal subunit protein S4 [Escherichia coli IAI1]
gi|218367127|emb|CAR04901.1| 30S ribosomal subunit protein S4 [Escherichia coli S88]
gi|218372045|emb|CAR19905.1| 30S ribosomal subunit protein S4 [Escherichia coli IAI39]
gi|218429147|emb|CAR10099.2| 30S ribosomal subunit protein S4 [Escherichia coli ED1a]
gi|218434001|emb|CAR14918.1| 30S ribosomal subunit protein S4 [Escherichia coli UMN026]
gi|222035005|emb|CAP77748.1| 30S ribosomal protein S4 [Escherichia coli LF82]
gi|226838963|gb|EEH70986.1| 30S ribosomal protein S4 [Escherichia sp. 1_1_43]
gi|226902290|gb|EEH88549.1| 30S ribosomal subunit protein S4 [Escherichia sp. 3_2_53FAA]
gi|227839572|gb|EEJ50038.1| 30S ribosomal protein S4 [Escherichia coli 83972]
gi|238859799|gb|ACR61797.1| 30S ribosomal subunit protein S4 [Escherichia coli BW2952]
gi|242378823|emb|CAQ33615.1| 30S ribosomal subunit protein S4, subunit of 30S ribosomal subunit
and ribosome [Escherichia coli BL21(DE3)]
gi|253322924|gb|ACT27526.1| ribosomal protein S4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975125|gb|ACT40796.1| 30S ribosomal protein S4 [Escherichia coli B str. REL606]
gi|253979281|gb|ACT44951.1| 30S ribosomal protein S4 [Escherichia coli BL21(DE3)]
gi|254594633|gb|ACT73994.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str.
TW14359]
gi|257756066|dbj|BAI27568.1| 30S ribosomal subunit protein S4 [Escherichia coli O26:H11 str.
11368]
gi|257761241|dbj|BAI32738.1| 30S ribosomal subunit protein S4 [Escherichia coli O103:H2 str.
12009]
gi|257766395|dbj|BAI37890.1| 30S ribosomal subunit protein S4 [Escherichia coli O111:H- str.
11128]
gi|260447685|gb|ACX38107.1| ribosomal protein S4 [Escherichia coli DH1]
gi|281180331|dbj|BAI56661.1| 30S ribosomal protein S4 [Escherichia coli SE15]
gi|281602661|gb|ADA75645.1| 30S ribosomal protein S4 [Shigella flexneri 2002017]
gi|284923302|emb|CBG36396.1| 30S ribosomal subunit protein S4 [Escherichia coli 042]
gi|290764527|gb|ADD58488.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. CB9615]
gi|291321741|gb|EFE61172.1| 30S ribosomal protein S4 [Escherichia coli B088]
gi|291425704|gb|EFE98738.1| rpsD [Escherichia coli FVEC1412]
gi|291431291|gb|EFF04276.1| 30S ribosomal protein S4 [Escherichia coli B185]
gi|291468362|gb|EFF10855.1| 30S ribosomal protein S4 [Escherichia coli B354]
gi|294491877|gb|ADE90633.1| ribosomal protein S4 [Escherichia coli IHE3034]
gi|298276470|gb|EFI17988.1| small subunit ribosomal protein S4 [Escherichia coli FVEC1302]
gi|300301894|gb|EFJ58279.1| ribosomal protein S4 [Escherichia coli MS 185-1]
gi|300308986|gb|EFJ63506.1| ribosomal protein S4 [Escherichia coli MS 200-1]
gi|300318229|gb|EFJ68013.1| ribosomal protein S4 [Escherichia coli MS 175-1]
gi|300359476|gb|EFJ75346.1| ribosomal protein S4 [Escherichia coli MS 198-1]
gi|300399548|gb|EFJ83086.1| ribosomal protein S4 [Escherichia coli MS 69-1]
gi|300404418|gb|EFJ87956.1| ribosomal protein S4 [Escherichia coli MS 84-1]
gi|300409380|gb|EFJ92918.1| ribosomal protein S4 [Escherichia coli MS 45-1]
gi|300414532|gb|EFJ97842.1| ribosomal protein S4 [Escherichia coli MS 115-1]
gi|300421742|gb|EFK05053.1| ribosomal protein S4 [Escherichia coli MS 182-1]
gi|300453765|gb|EFK17385.1| ribosomal protein S4 [Escherichia coli MS 116-1]
gi|300459451|gb|EFK22944.1| ribosomal protein S4 [Escherichia coli MS 21-1]
gi|300460014|gb|EFK23507.1| ribosomal protein S4 [Escherichia coli MS 187-1]
gi|300524666|gb|EFK45735.1| ribosomal protein S4 [Escherichia coli MS 119-7]
gi|300532385|gb|EFK53447.1| ribosomal protein S4 [Escherichia coli MS 107-1]
gi|300839201|gb|EFK66961.1| ribosomal protein S4 [Escherichia coli MS 124-1]
gi|300848015|gb|EFK75775.1| ribosomal protein S4 [Escherichia coli MS 78-1]
gi|301077786|gb|EFK92592.1| ribosomal protein S4 [Escherichia coli MS 146-1]
gi|305850757|gb|EFM51214.1| 30S ribosomal protein S4 [Escherichia coli NC101]
gi|306905474|gb|EFN36009.1| ribosomal protein S4 [Escherichia coli W]
gi|307555384|gb|ADN48159.1| 30S ribosomal subunit protein S4 [Escherichia coli ABU 83972]
gi|307628331|gb|ADN72635.1| 30S ribosomal protein S4 [Escherichia coli UM146]
gi|308121622|gb|EFO58884.1| ribosomal protein S4 [Escherichia coli MS 145-7]
gi|309703708|emb|CBJ03049.1| 30S ribosomal subunit protein S4 [Escherichia coli ETEC H10407]
gi|312947847|gb|ADR28674.1| 30S ribosomal protein S4 [Escherichia coli O83:H1 str. NRG 857C]
gi|315062588|gb|ADT76915.1| 30S ribosomal subunit protein S4 [Escherichia coli W]
gi|315137871|dbj|BAJ45030.1| 30S ribosomal protein S4 [Escherichia coli DH1]
gi|315255880|gb|EFU35848.1| ribosomal protein S4 [Escherichia coli MS 85-1]
gi|315284628|gb|EFU44073.1| ribosomal protein S4 [Escherichia coli MS 110-3]
gi|315292386|gb|EFU51738.1| ribosomal protein S4 [Escherichia coli MS 153-1]
gi|315298595|gb|EFU57850.1| ribosomal protein S4 [Escherichia coli MS 16-3]
gi|320182706|gb|EFW57592.1| SSU ribosomal protein S4p (S9e) [Shigella boydii ATCC 9905]
gi|320639601|gb|EFX09195.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. G5101]
gi|320645099|gb|EFX14115.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. 493-89]
gi|320650410|gb|EFX18876.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. H 2687]
gi|320655935|gb|EFX23855.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661387|gb|EFX28802.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. USDA 5905]
gi|320666409|gb|EFX33392.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. LSU-61]
gi|323162975|gb|EFZ48810.1| ribosomal protein S4 [Escherichia coli E128010]
gi|323173932|gb|EFZ59560.1| ribosomal protein S4 [Escherichia coli LT-68]
gi|323189099|gb|EFZ74383.1| ribosomal protein S4 [Escherichia coli RN587/1]
gi|323376825|gb|ADX49093.1| ribosomal protein S4 [Escherichia coli KO11FL]
gi|323934505|gb|EGB30913.1| ribosomal protein S4 [Escherichia coli E1520]
gi|323939282|gb|EGB35494.1| ribosomal protein S4 [Escherichia coli E482]
gi|323944283|gb|EGB40359.1| ribosomal protein S4 [Escherichia coli H120]
gi|323950210|gb|EGB46092.1| ribosomal protein S4 [Escherichia coli H252]
gi|323954581|gb|EGB50364.1| ribosomal protein S4 [Escherichia coli H263]
gi|323959553|gb|EGB55206.1| ribosomal protein S4 [Escherichia coli H489]
gi|323966258|gb|EGB61693.1| ribosomal protein S4 [Escherichia coli M863]
gi|323970100|gb|EGB65374.1| ribosomal protein S4 [Escherichia coli TA007]
gi|323974751|gb|EGB69864.1| ribosomal protein S4 [Escherichia coli TW10509]
gi|324009031|gb|EGB78250.1| ribosomal protein S4 [Escherichia coli MS 57-2]
gi|324014913|gb|EGB84132.1| ribosomal protein S4 [Escherichia coli MS 60-1]
gi|324017885|gb|EGB87104.1| ribosomal protein S4 [Escherichia coli MS 117-3]
gi|324111975|gb|EGC05954.1| ribosomal protein S4 [Escherichia fergusonii B253]
gi|324116314|gb|EGC10234.1| ribosomal protein S4 [Escherichia coli E1167]
gi|327250944|gb|EGE62637.1| ribosomal protein S4 [Escherichia coli STEC_7v]
gi|331036286|gb|EGI08512.1| ribosomal protein S4 [Escherichia coli H736]
gi|331041591|gb|EGI13735.1| ribosomal protein S4 [Escherichia coli M605]
gi|331046904|gb|EGI18982.1| ribosomal protein S4 [Escherichia coli M718]
gi|331052801|gb|EGI24834.1| ribosomal protein S4 [Escherichia coli TA206]
gi|331057419|gb|EGI29405.1| ribosomal protein S4 [Escherichia coli TA143]
gi|331062187|gb|EGI34107.1| ribosomal protein S4 [Escherichia coli TA271]
gi|331067711|gb|EGI39109.1| ribosomal protein S4 [Escherichia coli TA280]
gi|331072537|gb|EGI43862.1| ribosomal protein S4 [Escherichia coli H591]
gi|331077309|gb|EGI48521.1| ribosomal protein S4 [Escherichia coli H299]
gi|332090406|gb|EGI95504.1| ribosomal protein S4 [Shigella boydii 3594-74]
gi|332104203|gb|EGJ07549.1| 30S ribosomal subunit protein S4 [Shigella sp. D9]
gi|340732827|gb|EGR61963.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 01-09591]
gi|340738394|gb|EGR72643.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. LB226692]
gi|341919697|gb|EGT69307.1| rpsD [Escherichia coli O104:H4 str. C227-11]
gi|342361526|gb|EGU25662.1| 30S ribosomal protein S4 [Escherichia coli XH140A]
gi|342927001|gb|EGU95723.1| ribosomal protein S4 [Escherichia coli MS 79-10]
gi|344191987|gb|EGV46089.1| 30S ribosomal protein S4 [Escherichia coli XH001]
gi|345332471|gb|EGW64927.1| ribosomal protein S4 [Escherichia coli STEC_C165-02]
gi|345334683|gb|EGW67124.1| ribosomal protein S4 [Escherichia coli STEC_B2F1]
gi|345367513|gb|EGW99554.1| ribosomal protein S4 [Escherichia coli STEC_DG131-3]
gi|345371197|gb|EGX03168.1| ribosomal protein S4 [Escherichia coli G58-1]
gi|345373439|gb|EGX05398.1| ribosomal protein S4 [Escherichia coli STEC_H.1.8]
gi|345378769|gb|EGX10689.1| ribosomal protein S4 [Escherichia coli STEC_MHI813]
gi|349739835|gb|AEQ14541.1| 30S ribosomal subunit protein S4 [Escherichia coli O7:K1 str. CE10]
gi|354858622|gb|EHF19071.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. C236-11]
gi|354863076|gb|EHF23510.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. C227-11]
gi|354863966|gb|EHF24396.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 04-8351]
gi|354871111|gb|EHF31509.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 09-7901]
gi|354877649|gb|EHF38007.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-3677]
gi|354886550|gb|EHF46832.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4404]
gi|354890442|gb|EHF50681.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4522]
gi|354894763|gb|EHF54953.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4623]
gi|354906568|gb|EHF66642.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354909211|gb|EHF69244.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354911196|gb|EHF71201.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354913969|gb|EHF73954.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354921647|gb|EHF81568.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-4632 C5]
gi|355422075|gb|AER86272.1| 30S ribosomal protein S4 [Escherichia coli str. 'clone D i2']
gi|355426995|gb|AER91191.1| 30S ribosomal protein S4 [Escherichia coli str. 'clone D i14']
gi|359333479|dbj|BAL39926.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12
substr. MDS42]
gi|371593621|gb|EHN82499.1| 30S ribosomal protein S4 [Escherichia coli H494]
gi|371596161|gb|EHN85001.1| 30S ribosomal protein S4 [Escherichia coli TA124]
gi|371604557|gb|EHN93184.1| 30S ribosomal protein S4 [Escherichia coli H397]
gi|371606978|gb|EHN95563.1| 30S ribosomal protein S4 [Escherichia coli E101]
gi|371615984|gb|EHO04360.1| 30S ribosomal protein S4 [Escherichia coli B093]
gi|373245355|gb|EHP64826.1| 30S ribosomal protein S4 [Escherichia coli 4_1_47FAA]
gi|374360682|gb|AEZ42389.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. RM12579]
gi|375322433|gb|EHS68190.1| 30S ribosomal protein S4 [Escherichia coli O157:H43 str. T22]
gi|377876273|gb|EHU40880.1| ribosomal protein S4 [Escherichia coli DEC2D]
gi|377891909|gb|EHU56361.1| ribosomal protein S4 [Escherichia coli DEC3B]
gi|377920546|gb|EHU84563.1| ribosomal protein S4 [Escherichia coli DEC4A]
gi|377937049|gb|EHV00837.1| ribosomal protein S4 [Escherichia coli DEC4C]
gi|377953409|gb|EHV16987.1| ribosomal protein S4 [Escherichia coli DEC4F]
gi|377958178|gb|EHV21698.1| ribosomal protein S4 [Escherichia coli DEC5A]
gi|377962615|gb|EHV26067.1| ribosomal protein S4 [Escherichia coli DEC5B]
gi|377972122|gb|EHV35472.1| ribosomal protein S4 [Escherichia coli DEC5D]
gi|377993439|gb|EHV56571.1| ribosomal protein S4 [Escherichia coli DEC6C]
gi|378004649|gb|EHV67660.1| ribosomal protein S4 [Escherichia coli DEC6D]
gi|378044158|gb|EHW06579.1| ribosomal protein S4 [Escherichia coli DEC8A]
gi|378049989|gb|EHW12323.1| ribosomal protein S4 [Escherichia coli DEC8C]
gi|378076309|gb|EHW38317.1| ribosomal protein S4 [Escherichia coli DEC9C]
gi|378107666|gb|EHW69285.1| ribosomal protein S4 [Escherichia coli DEC10C]
gi|378124845|gb|EHW86248.1| ribosomal protein S4 [Escherichia coli DEC10E]
gi|378197348|gb|EHX57829.1| ribosomal protein S4 [Escherichia coli DEC13B]
gi|380346694|gb|EIA34986.1| 30S ribosomal protein S4 [Escherichia coli SCI-07]
gi|383391277|gb|AFH16235.1| 30S ribosomal protein S4 [Escherichia coli KO11FL]
gi|383406881|gb|AFH13124.1| 30S ribosomal protein S4 [Escherichia coli W]
gi|383468580|gb|EID63601.1| 30S ribosomal protein S4 [Shigella flexneri 5a str. M90T]
gi|385153735|gb|EIF15763.1| 30S ribosomal protein S4 [Escherichia coli O32:H37 str. P4]
gi|385537862|gb|EIF84729.1| 30S ribosomal protein S4 [Escherichia coli M919]
gi|385709532|gb|EIG46529.1| 30S ribosomal protein S4 [Escherichia coli H730]
gi|385709734|gb|EIG46730.1| 30S ribosomal protein S4 [Escherichia coli B799]
gi|386120037|gb|EIG68674.1| 30S ribosomal protein S4 [Escherichia sp. 4_1_40B]
gi|386139304|gb|EIG80459.1| ribosomal protein S4 [Escherichia coli 1.2741]
gi|386144588|gb|EIG91054.1| ribosomal protein S4 [Escherichia coli 97.0246]
gi|386153456|gb|EIH04745.1| ribosomal protein S4 [Escherichia coli 5.0588]
gi|386155729|gb|EIH12079.1| ribosomal protein S4 [Escherichia coli 97.0259]
gi|386163106|gb|EIH24902.1| ribosomal protein S4 [Escherichia coli 1.2264]
gi|386165504|gb|EIH32024.1| ribosomal protein S4 [Escherichia coli 96.0497]
gi|386173757|gb|EIH45769.1| ribosomal protein S4 [Escherichia coli 99.0741]
gi|386176585|gb|EIH54064.1| ribosomal protein S4 [Escherichia coli 3.2608]
gi|386183979|gb|EIH66726.1| ribosomal protein S4 [Escherichia coli 93.0624]
gi|386188826|gb|EIH77615.1| ribosomal protein S4 [Escherichia coli 4.0522]
gi|386195832|gb|EIH90067.1| ribosomal protein S4 [Escherichia coli JB1-95]
gi|386201278|gb|EII00269.1| ribosomal protein S4 [Escherichia coli 96.154]
gi|386212758|gb|EII23202.1| ribosomal protein S4 [Escherichia coli 9.0111]
gi|386219708|gb|EII36172.1| ribosomal protein S4 [Escherichia coli 4.0967]
gi|386222083|gb|EII44512.1| ribosomal protein S4 [Escherichia coli 2.3916]
gi|386229624|gb|EII56979.1| ribosomal protein S4 [Escherichia coli 3.3884]
gi|386235355|gb|EII67331.1| ribosomal protein S4 [Escherichia coli 2.4168]
gi|386241230|gb|EII78148.1| ribosomal protein S4 [Escherichia coli 3.2303]
gi|386245004|gb|EII86734.1| ribosomal protein S4 [Escherichia coli 3003]
gi|386251400|gb|EII97567.1| ribosomal protein S4 [Escherichia coli TW07793]
gi|386254500|gb|EIJ04190.1| ribosomal protein S4 [Escherichia coli B41]
gi|386260758|gb|EIJ16232.1| ribosomal protein S4 [Escherichia coli 900105 (10e)]
gi|386797924|gb|AFJ30958.1| 30S ribosomal protein S4 [Escherichia coli Xuzhou21]
gi|388335303|gb|EIL01872.1| 30S ribosomal protein S4 [Escherichia coli O103:H2 str. CVM9450]
gi|388335438|gb|EIL02003.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9534]
gi|388341148|gb|EIL07291.1| 30S ribosomal protein S4 [Escherichia coli O103:H25 str. CVM9340]
gi|388348753|gb|EIL14324.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9570]
gi|388355163|gb|EIL20022.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9574]
gi|388367669|gb|EIL31335.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM9942]
gi|388370649|gb|EIL34166.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9545]
gi|388377863|gb|EIL40643.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM10026]
gi|388389529|gb|EIL51056.1| 30S ribosomal protein S4 [Escherichia coli KD2]
gi|388391656|gb|EIL53108.1| 30S ribosomal protein S4 [Escherichia coli KD1]
gi|388397907|gb|EIL58864.1| 30S ribosomal protein S4 [Escherichia coli 541-15]
gi|388404122|gb|EIL64612.1| 30S ribosomal protein S4 [Escherichia coli 75]
gi|388408982|gb|EIL69309.1| 30S ribosomal protein S4 [Escherichia coli 541-1]
gi|388410115|gb|EIL70371.1| 30S ribosomal protein S4 [Escherichia coli 576-1]
gi|388419346|gb|EIL79088.1| 30S ribosomal protein S4 [Escherichia coli CUMT8]
gi|388419529|gb|EIL79258.1| 30S ribosomal protein S4 [Escherichia coli HM605]
gi|390638808|gb|EIN18302.1| ribosomal protein S4 [Escherichia coli FRIK1996]
gi|390640475|gb|EIN19933.1| ribosomal protein S4 [Escherichia coli FDA517]
gi|390661216|gb|EIN38878.1| ribosomal protein S4 [Escherichia coli FRIK1990]
gi|390682212|gb|EIN57988.1| ribosomal protein S4 [Escherichia coli PA9]
gi|390693644|gb|EIN68263.1| ribosomal protein S4 [Escherichia coli PA10]
gi|390698124|gb|EIN72513.1| ribosomal protein S4 [Escherichia coli PA14]
gi|390712409|gb|EIN85366.1| ribosomal protein S4 [Escherichia coli PA22]
gi|390738848|gb|EIO10045.1| ribosomal protein S4 [Escherichia coli PA31]
gi|390742872|gb|EIO13861.1| ribosomal protein S4 [Escherichia coli PA33]
gi|390756206|gb|EIO25717.1| ribosomal protein S4 [Escherichia coli PA40]
gi|390764776|gb|EIO33973.1| ribosomal protein S4 [Escherichia coli PA41]
gi|390843010|gb|EIP06831.1| ribosomal protein S4 [Escherichia coli TW14313]
gi|390843984|gb|EIP07751.1| ribosomal protein S4 [Escherichia coli TW14301]
gi|390859104|gb|EIP21464.1| ribosomal protein S4 [Escherichia coli EC4422]
gi|390868091|gb|EIP29854.1| ribosomal protein S4 [Escherichia coli EC4402]
gi|390893503|gb|EIP53054.1| ribosomal protein S4 [Escherichia coli EC4448]
gi|390917551|gb|EIP75969.1| ribosomal protein S4 [Escherichia coli EC1845]
gi|394385823|gb|EJE63339.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9602]
gi|394388319|gb|EJE65601.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str. CVM9634]
gi|394392128|gb|EJE68923.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM10224]
gi|394398826|gb|EJE74963.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9553]
gi|394401955|gb|EJE77719.1| hypothetical protein ECO10021_28847 [Escherichia coli O26:H11 str.
CVM10021]
gi|394403973|gb|EJE79461.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str. CVM9455]
gi|394417003|gb|EJE90761.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM10030]
gi|394419723|gb|EJE93305.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str. CVM9952]
gi|406775808|gb|AFS55232.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052382|gb|AFS72433.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 2011C-3493]
gi|407067294|gb|AFS88341.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408067599|gb|EKH02032.1| ribosomal protein S4 [Escherichia coli PA34]
gi|408077500|gb|EKH11704.1| ribosomal protein S4 [Escherichia coli FDA506]
gi|408080975|gb|EKH15014.1| ribosomal protein S4 [Escherichia coli FDA507]
gi|408095542|gb|EKH28511.1| ribosomal protein S4 [Escherichia coli FRIK1999]
gi|408101943|gb|EKH34361.1| ribosomal protein S4 [Escherichia coli FRIK1997]
gi|408113329|gb|EKH44929.1| ribosomal protein S4 [Escherichia coli NE037]
gi|408119512|gb|EKH50578.1| ribosomal protein S4 [Escherichia coli FRIK2001]
gi|408125659|gb|EKH56255.1| ribosomal protein S4 [Escherichia coli PA4]
gi|408181321|gb|EKI07882.1| ribosomal protein S4 [Escherichia coli 5412]
gi|408198740|gb|EKI23956.1| ribosomal protein S4 [Escherichia coli ARS4.2123]
gi|408211322|gb|EKI35870.1| ribosomal protein S4 [Escherichia coli 07798]
gi|408224996|gb|EKI48692.1| ribosomal protein S4 [Escherichia coli EC1735]
gi|408244493|gb|EKI66922.1| ribosomal protein S4 [Escherichia coli EC1846]
gi|408257119|gb|EKI78463.1| ribosomal protein S4 [Escherichia coli EC1848]
gi|408289362|gb|EKJ08125.1| ribosomal protein S4 [Escherichia coli EC1864]
gi|408322443|gb|EKJ38429.1| ribosomal protein S4 [Escherichia coli EC1870]
gi|408546815|gb|EKK24222.1| ribosomal protein S4 [Escherichia coli 5.2239]
gi|408546920|gb|EKK24321.1| ribosomal protein S4 [Escherichia coli 3.4870]
gi|408547911|gb|EKK25297.1| ribosomal protein S4 [Escherichia coli 6.0172]
gi|408565066|gb|EKK41161.1| ribosomal protein S4 [Escherichia coli 8.0566]
gi|408565200|gb|EKK41288.1| ribosomal protein S4 [Escherichia coli 8.0586]
gi|408589327|gb|EKK63848.1| ribosomal protein S4 [Escherichia coli 10.0869]
gi|408597140|gb|EKK71213.1| ribosomal protein S4 [Escherichia coli 8.0416]
gi|412964671|emb|CCK48600.1| 30S ribosomal subunit protein S4 [Escherichia coli chi7122]
gi|412971258|emb|CCJ45913.1| 30S ribosomal subunit protein S4 [Escherichia coli]
gi|421933196|gb|EKT90989.1| 30S ribosomal protein S4 [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421943114|gb|EKU00406.1| 30S ribosomal protein S4 [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421944167|gb|EKU01428.1| 30S ribosomal protein S4 [Escherichia coli O26:H11 str.
CFSAN001629]
gi|427201149|gb|EKV71546.1| ribosomal protein S4 [Escherichia coli 89.0511]
gi|427206257|gb|EKV76474.1| ribosomal protein S4 [Escherichia coli 88.1467]
gi|427257383|gb|EKW23511.1| ribosomal protein S4 [Escherichia coli 95.1288]
gi|427259200|gb|EKW25264.1| ribosomal protein S4 [Escherichia coli 95.0943]
gi|427281445|gb|EKW45762.1| ribosomal protein S4 [Escherichia coli 96.0939]
gi|427289871|gb|EKW53377.1| ribosomal protein S4 [Escherichia coli 96.0932]
gi|427297073|gb|EKW60114.1| ribosomal protein S4 [Escherichia coli 97.0003]
gi|427309483|gb|EKW71800.1| ribosomal protein S4 [Escherichia coli 97.1742]
gi|427312727|gb|EKW74877.1| ribosomal protein S4 [Escherichia coli 97.0007]
gi|427317162|gb|EKW79072.1| ribosomal protein S4 [Escherichia coli 99.0672]
gi|427324529|gb|EKW86001.1| ribosomal protein S4 [Escherichia coli 99.0678]
gi|429251860|gb|EKY36428.1| ribosomal protein S4 [Escherichia coli 96.0109]
gi|429253135|gb|EKY37629.1| ribosomal protein S4 [Escherichia coli 97.0010]
gi|429346694|gb|EKY83473.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02092]
gi|429356673|gb|EKY93348.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02033-1]
gi|429357548|gb|EKY94221.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02030]
gi|429372840|gb|EKZ09389.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02093]
gi|429374781|gb|EKZ11320.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02281]
gi|429377411|gb|EKZ13932.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02318]
gi|429388643|gb|EKZ25068.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-02913]
gi|429391412|gb|EKZ27816.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-03439]
gi|429392421|gb|EKZ28822.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-03943]
gi|429401942|gb|EKZ38235.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. 11-04080]
gi|429402995|gb|EKZ39280.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-9990]
gi|429406622|gb|EKZ42877.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414663|gb|EKZ50837.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4984]
gi|429418133|gb|EKZ54279.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4986]
gi|429424425|gb|EKZ60526.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4987]
gi|429428228|gb|EKZ64304.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-4988]
gi|429433285|gb|EKZ69318.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-5603]
gi|429440245|gb|EKZ76223.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445143|gb|EKZ81085.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec12-0465]
gi|429449084|gb|EKZ84986.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454735|gb|EKZ90593.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458842|gb|EKZ94662.1| 30S ribosomal protein S4 [Escherichia coli O104:H4 str. Ec11-9941]
gi|430872761|gb|ELB96341.1| 30S ribosomal protein S4 [Escherichia coli KTE2]
gi|430874053|gb|ELB97618.1| 30S ribosomal protein S4 [Escherichia coli KTE4]
gi|430883393|gb|ELC06387.1| 30S ribosomal protein S4 [Escherichia coli KTE5]
gi|430891546|gb|ELC14072.1| 30S ribosomal protein S4 [Escherichia coli KTE10]
gi|430893288|gb|ELC15612.1| 30S ribosomal protein S4 [Escherichia coli KTE11]
gi|430896105|gb|ELC18349.1| 30S ribosomal protein S4 [Escherichia coli KTE12]
gi|430903581|gb|ELC25317.1| 30S ribosomal protein S4 [Escherichia coli KTE15]
gi|430904520|gb|ELC26229.1| 30S ribosomal protein S4 [Escherichia coli KTE16]
gi|430913116|gb|ELC34246.1| 30S ribosomal protein S4 [Escherichia coli KTE25]
gi|430915100|gb|ELC36184.1| 30S ribosomal protein S4 [Escherichia coli KTE21]
gi|430923078|gb|ELC43815.1| 30S ribosomal protein S4 [Escherichia coli KTE26]
gi|430927239|gb|ELC47803.1| 30S ribosomal protein S4 [Escherichia coli KTE28]
gi|430933347|gb|ELC53753.1| 30S ribosomal protein S4 [Escherichia coli KTE39]
gi|430936596|gb|ELC56864.1| 30S ribosomal protein S4 [Escherichia coli KTE44]
gi|430942046|gb|ELC62184.1| 30S ribosomal protein S4 [Escherichia coli KTE178]
gi|430950684|gb|ELC69912.1| 30S ribosomal protein S4 [Escherichia coli KTE187]
gi|430951764|gb|ELC70972.1| 30S ribosomal protein S4 [Escherichia coli KTE181]
gi|430960659|gb|ELC78710.1| 30S ribosomal protein S4 [Escherichia coli KTE188]
gi|430963824|gb|ELC81403.1| 30S ribosomal protein S4 [Escherichia coli KTE189]
gi|430970981|gb|ELC88003.1| 30S ribosomal protein S4 [Escherichia coli KTE191]
gi|430977957|gb|ELC94780.1| 30S ribosomal protein S4 [Escherichia coli KTE193]
gi|430979875|gb|ELC96639.1| 30S ribosomal protein S4 [Escherichia coli KTE201]
gi|430985893|gb|ELD02476.1| 30S ribosomal protein S4 [Escherichia coli KTE204]
gi|430991228|gb|ELD07632.1| 30S ribosomal protein S4 [Escherichia coli KTE205]
gi|430995634|gb|ELD11924.1| 30S ribosomal protein S4 [Escherichia coli KTE206]
gi|431002229|gb|ELD17742.1| 30S ribosomal protein S4 [Escherichia coli KTE208]
gi|431004233|gb|ELD19459.1| 30S ribosomal protein S4 [Escherichia coli KTE210]
gi|431013766|gb|ELD27488.1| 30S ribosomal protein S4 [Escherichia coli KTE212]
gi|431018218|gb|ELD31654.1| 30S ribosomal protein S4 [Escherichia coli KTE213]
gi|431020945|gb|ELD34274.1| 30S ribosomal protein S4 [Escherichia coli KTE214]
gi|431026030|gb|ELD39105.1| 30S ribosomal protein S4 [Escherichia coli KTE216]
gi|431035516|gb|ELD46899.1| 30S ribosomal protein S4 [Escherichia coli KTE220]
gi|431038382|gb|ELD49278.1| 30S ribosomal protein S4 [Escherichia coli KTE224]
gi|431047736|gb|ELD57721.1| 30S ribosomal protein S4 [Escherichia coli KTE228]
gi|431048734|gb|ELD58702.1| 30S ribosomal protein S4 [Escherichia coli KTE230]
gi|431057902|gb|ELD67312.1| 30S ribosomal protein S4 [Escherichia coli KTE234]
gi|431060773|gb|ELD70095.1| 30S ribosomal protein S4 [Escherichia coli KTE233]
gi|431067058|gb|ELD75667.1| 30S ribosomal protein S4 [Escherichia coli KTE235]
gi|431071854|gb|ELD79611.1| 30S ribosomal protein S4 [Escherichia coli KTE236]
gi|431077411|gb|ELD84662.1| 30S ribosomal protein S4 [Escherichia coli KTE237]
gi|431081024|gb|ELD87803.1| 30S ribosomal protein S4 [Escherichia coli KTE47]
gi|431088625|gb|ELD94495.1| 30S ribosomal protein S4 [Escherichia coli KTE49]
gi|431090258|gb|ELD96027.1| 30S ribosomal protein S4 [Escherichia coli KTE51]
gi|431097597|gb|ELE02924.1| 30S ribosomal protein S4 [Escherichia coli KTE53]
gi|431104810|gb|ELE09174.1| 30S ribosomal protein S4 [Escherichia coli KTE55]
gi|431112617|gb|ELE16299.1| 30S ribosomal protein S4 [Escherichia coli KTE56]
gi|431114721|gb|ELE18248.1| 30S ribosomal protein S4 [Escherichia coli KTE57]
gi|431117803|gb|ELE21027.1| 30S ribosomal protein S4 [Escherichia coli KTE58]
gi|431125947|gb|ELE28301.1| 30S ribosomal protein S4 [Escherichia coli KTE60]
gi|431128359|gb|ELE30543.1| 30S ribosomal protein S4 [Escherichia coli KTE62]
gi|431135641|gb|ELE37516.1| 30S ribosomal protein S4 [Escherichia coli KTE67]
gi|431137501|gb|ELE39346.1| 30S ribosomal protein S4 [Escherichia coli KTE66]
gi|431146324|gb|ELE47760.1| 30S ribosomal protein S4 [Escherichia coli KTE72]
gi|431151584|gb|ELE52597.1| 30S ribosomal protein S4 [Escherichia coli KTE75]
gi|431156579|gb|ELE57246.1| 30S ribosomal protein S4 [Escherichia coli KTE76]
gi|431160794|gb|ELE61295.1| 30S ribosomal protein S4 [Escherichia coli KTE77]
gi|431167345|gb|ELE67610.1| 30S ribosomal protein S4 [Escherichia coli KTE80]
gi|431168819|gb|ELE69051.1| 30S ribosomal protein S4 [Escherichia coli KTE81]
gi|431177618|gb|ELE77532.1| 30S ribosomal protein S4 [Escherichia coli KTE83]
gi|431177942|gb|ELE77855.1| 30S ribosomal protein S4 [Escherichia coli KTE86]
gi|431187304|gb|ELE86805.1| 30S ribosomal protein S4 [Escherichia coli KTE87]
gi|431187643|gb|ELE87142.1| 30S ribosomal protein S4 [Escherichia coli KTE93]
gi|431197083|gb|ELE95949.1| 30S ribosomal protein S4 [Escherichia coli KTE111]
gi|431197680|gb|ELE96507.1| 30S ribosomal protein S4 [Escherichia coli KTE116]
gi|431208166|gb|ELF06388.1| 30S ribosomal protein S4 [Escherichia coli KTE119]
gi|431211641|gb|ELF09602.1| 30S ribosomal protein S4 [Escherichia coli KTE142]
gi|431217575|gb|ELF15141.1| 30S ribosomal protein S4 [Escherichia coli KTE143]
gi|431219544|gb|ELF16938.1| 30S ribosomal protein S4 [Escherichia coli KTE156]
gi|431231387|gb|ELF27148.1| 30S ribosomal protein S4 [Escherichia coli KTE162]
gi|431235868|gb|ELF31082.1| 30S ribosomal protein S4 [Escherichia coli KTE161]
gi|431239924|gb|ELF34386.1| 30S ribosomal protein S4 [Escherichia coli KTE169]
gi|431240710|gb|ELF35158.1| 30S ribosomal protein S4 [Escherichia coli KTE171]
gi|431253074|gb|ELF46586.1| 30S ribosomal protein S4 [Escherichia coli KTE8]
gi|431255172|gb|ELF48426.1| 30S ribosomal protein S4 [Escherichia coli KTE6]
gi|431260453|gb|ELF52550.1| 30S ribosomal protein S4 [Escherichia coli KTE9]
gi|431261980|gb|ELF53970.1| 30S ribosomal protein S4 [Escherichia coli KTE17]
gi|431271161|gb|ELF62300.1| 30S ribosomal protein S4 [Escherichia coli KTE18]
gi|431271940|gb|ELF63058.1| 30S ribosomal protein S4 [Escherichia coli KTE45]
gi|431279820|gb|ELF70767.1| 30S ribosomal protein S4 [Escherichia coli KTE42]
gi|431281188|gb|ELF72091.1| 30S ribosomal protein S4 [Escherichia coli KTE23]
gi|431289175|gb|ELF79916.1| 30S ribosomal protein S4 [Escherichia coli KTE43]
gi|431293702|gb|ELF83985.1| 30S ribosomal protein S4 [Escherichia coli KTE29]
gi|431299765|gb|ELF89331.1| 30S ribosomal protein S4 [Escherichia coli KTE22]
gi|431306439|gb|ELF94752.1| 30S ribosomal protein S4 [Escherichia coli KTE46]
gi|431307287|gb|ELF95579.1| 30S ribosomal protein S4 [Escherichia coli KTE48]
gi|431322074|gb|ELG09662.1| 30S ribosomal protein S4 [Escherichia coli KTE50]
gi|431324034|gb|ELG11490.1| 30S ribosomal protein S4 [Escherichia coli KTE54]
gi|431324696|gb|ELG12112.1| 30S ribosomal protein S4 [Escherichia coli KTE59]
gi|431326341|gb|ELG13687.1| 30S ribosomal protein S4 [Escherichia coli KTE63]
gi|431335177|gb|ELG22317.1| 30S ribosomal protein S4 [Escherichia coli KTE65]
gi|431336992|gb|ELG24086.1| 30S ribosomal protein S4 [Escherichia coli KTE78]
gi|431346017|gb|ELG32930.1| 30S ribosomal protein S4 [Escherichia coli KTE84]
gi|431349245|gb|ELG36086.1| 30S ribosomal protein S4 [Escherichia coli KTE79]
gi|431352986|gb|ELG39744.1| 30S ribosomal protein S4 [Escherichia coli KTE91]
gi|431360180|gb|ELG46791.1| 30S ribosomal protein S4 [Escherichia coli KTE101]
gi|431361461|gb|ELG48042.1| 30S ribosomal protein S4 [Escherichia coli KTE115]
gi|431365465|gb|ELG51970.1| 30S ribosomal protein S4 [Escherichia coli KTE118]
gi|431378711|gb|ELG63702.1| 30S ribosomal protein S4 [Escherichia coli KTE123]
gi|431382346|gb|ELG66684.1| 30S ribosomal protein S4 [Escherichia coli KTE136]
gi|431382993|gb|ELG67134.1| 30S ribosomal protein S4 [Escherichia coli KTE135]
gi|431386329|gb|ELG70285.1| 30S ribosomal protein S4 [Escherichia coli KTE140]
gi|431392611|gb|ELG76182.1| 30S ribosomal protein S4 [Escherichia coli KTE141]
gi|431397783|gb|ELG81215.1| 30S ribosomal protein S4 [Escherichia coli KTE144]
gi|431402098|gb|ELG85411.1| 30S ribosomal protein S4 [Escherichia coli KTE146]
gi|431408767|gb|ELG91949.1| 30S ribosomal protein S4 [Escherichia coli KTE147]
gi|431413981|gb|ELG96730.1| 30S ribosomal protein S4 [Escherichia coli KTE158]
gi|431418061|gb|ELH00475.1| 30S ribosomal protein S4 [Escherichia coli KTE154]
gi|431423516|gb|ELH05642.1| 30S ribosomal protein S4 [Escherichia coli KTE192]
gi|431427967|gb|ELH09909.1| 30S ribosomal protein S4 [Escherichia coli KTE194]
gi|431431036|gb|ELH12814.1| 30S ribosomal protein S4 [Escherichia coli KTE165]
gi|431435426|gb|ELH17035.1| 30S ribosomal protein S4 [Escherichia coli KTE173]
gi|431435935|gb|ELH17542.1| 30S ribosomal protein S4 [Escherichia coli KTE190]
gi|431440566|gb|ELH21894.1| 30S ribosomal protein S4 [Escherichia coli KTE175]
gi|431454038|gb|ELH34416.1| 30S ribosomal protein S4 [Escherichia coli KTE196]
gi|431460000|gb|ELH40289.1| 30S ribosomal protein S4 [Escherichia coli KTE183]
gi|431460718|gb|ELH41003.1| 30S ribosomal protein S4 [Escherichia coli KTE184]
gi|431464716|gb|ELH44834.1| 30S ribosomal protein S4 [Escherichia coli KTE197]
gi|431470339|gb|ELH50261.1| 30S ribosomal protein S4 [Escherichia coli KTE202]
gi|431477182|gb|ELH56952.1| 30S ribosomal protein S4 [Escherichia coli KTE203]
gi|431478919|gb|ELH58662.1| 30S ribosomal protein S4 [Escherichia coli KTE207]
gi|431486311|gb|ELH65961.1| 30S ribosomal protein S4 [Escherichia coli KTE209]
gi|431489338|gb|ELH68965.1| 30S ribosomal protein S4 [Escherichia coli KTE211]
gi|431491545|gb|ELH71149.1| 30S ribosomal protein S4 [Escherichia coli KTE217]
gi|431494389|gb|ELH73977.1| 30S ribosomal protein S4 [Escherichia coli KTE215]
gi|431502655|gb|ELH81540.1| 30S ribosomal protein S4 [Escherichia coli KTE218]
gi|431504636|gb|ELH83260.1| 30S ribosomal protein S4 [Escherichia coli KTE223]
gi|431510324|gb|ELH88569.1| 30S ribosomal protein S4 [Escherichia coli KTE227]
gi|431521418|gb|ELH98663.1| 30S ribosomal protein S4 [Escherichia coli KTE229]
gi|431527261|gb|ELI03983.1| 30S ribosomal protein S4 [Escherichia coli KTE104]
gi|431528064|gb|ELI04775.1| 30S ribosomal protein S4 [Escherichia coli KTE105]
gi|431532326|gb|ELI08886.1| 30S ribosomal protein S4 [Escherichia coli KTE106]
gi|431540955|gb|ELI16406.1| 30S ribosomal protein S4 [Escherichia coli KTE109]
gi|431547568|gb|ELI21865.1| 30S ribosomal protein S4 [Escherichia coli KTE112]
gi|431549202|gb|ELI23289.1| 30S ribosomal protein S4 [Escherichia coli KTE113]
gi|431553845|gb|ELI27767.1| 30S ribosomal protein S4 [Escherichia coli KTE117]
gi|431562566|gb|ELI35865.1| 30S ribosomal protein S4 [Escherichia coli KTE120]
gi|431566717|gb|ELI39737.1| 30S ribosomal protein S4 [Escherichia coli KTE124]
gi|431567251|gb|ELI40252.1| 30S ribosomal protein S4 [Escherichia coli KTE122]
gi|431578783|gb|ELI51373.1| 30S ribosomal protein S4 [Escherichia coli KTE125]
gi|431580176|gb|ELI52742.1| 30S ribosomal protein S4 [Escherichia coli KTE128]
gi|431584304|gb|ELI56288.1| 30S ribosomal protein S4 [Escherichia coli KTE129]
gi|431594319|gb|ELI64601.1| 30S ribosomal protein S4 [Escherichia coli KTE131]
gi|431598493|gb|ELI68285.1| 30S ribosomal protein S4 [Escherichia coli KTE133]
gi|431602396|gb|ELI71835.1| 30S ribosomal protein S4 [Escherichia coli KTE137]
gi|431608029|gb|ELI77381.1| 30S ribosomal protein S4 [Escherichia coli KTE138]
gi|431613124|gb|ELI82325.1| 30S ribosomal protein S4 [Escherichia coli KTE139]
gi|431616679|gb|ELI85704.1| 30S ribosomal protein S4 [Escherichia coli KTE145]
gi|431624669|gb|ELI93267.1| 30S ribosomal protein S4 [Escherichia coli KTE148]
gi|431625776|gb|ELI94334.1| 30S ribosomal protein S4 [Escherichia coli KTE150]
gi|431631525|gb|ELI99832.1| 30S ribosomal protein S4 [Escherichia coli KTE153]
gi|431639577|gb|ELJ07432.1| 30S ribosomal protein S4 [Escherichia coli KTE157]
gi|431641430|gb|ELJ09169.1| 30S ribosomal protein S4 [Escherichia coli KTE160]
gi|431643921|gb|ELJ11609.1| 30S ribosomal protein S4 [Escherichia coli KTE163]
gi|431654081|gb|ELJ21152.1| 30S ribosomal protein S4 [Escherichia coli KTE166]
gi|431656986|gb|ELJ23958.1| 30S ribosomal protein S4 [Escherichia coli KTE167]
gi|431658776|gb|ELJ25686.1| 30S ribosomal protein S4 [Escherichia coli KTE168]
gi|431667796|gb|ELJ34373.1| 30S ribosomal protein S4 [Escherichia coli KTE174]
gi|431671159|gb|ELJ37445.1| 30S ribosomal protein S4 [Escherichia coli KTE176]
gi|431674727|gb|ELJ40883.1| 30S ribosomal protein S4 [Escherichia coli KTE177]
gi|431684387|gb|ELJ49995.1| 30S ribosomal protein S4 [Escherichia coli KTE179]
gi|431685052|gb|ELJ50655.1| 30S ribosomal protein S4 [Escherichia coli KTE180]
gi|431689612|gb|ELJ55115.1| 30S ribosomal protein S4 [Escherichia coli KTE232]
gi|431698421|gb|ELJ63465.1| 30S ribosomal protein S4 [Escherichia coli KTE82]
gi|431703002|gb|ELJ67694.1| 30S ribosomal protein S4 [Escherichia coli KTE88]
gi|431703064|gb|ELJ67755.1| 30S ribosomal protein S4 [Escherichia coli KTE85]
gi|431713610|gb|ELJ77837.1| 30S ribosomal protein S4 [Escherichia coli KTE90]
gi|431716936|gb|ELJ81040.1| 30S ribosomal protein S4 [Escherichia coli KTE95]
gi|431718331|gb|ELJ82410.1| 30S ribosomal protein S4 [Escherichia coli KTE94]
gi|431728555|gb|ELJ92233.1| 30S ribosomal protein S4 [Escherichia coli KTE97]
gi|431732565|gb|ELJ96017.1| 30S ribosomal protein S4 [Escherichia coli KTE99]
gi|432345909|gb|ELL40401.1| 30S ribosomal protein S4 [Escherichia coli J96]
gi|443423867|gb|AGC88771.1| 30S ribosomal protein S4 [Escherichia coli APEC O78]
gi|444537605|gb|ELV17523.1| ribosomal protein S4 [Escherichia coli 09BKT078844]
gi|444555499|gb|ELV32962.1| ribosomal protein S4 [Escherichia coli 99.0839]
gi|444575303|gb|ELV51547.1| ribosomal protein S4 [Escherichia coli 99.1793]
gi|444589107|gb|ELV64457.1| ribosomal protein S4 [Escherichia coli ATCC 700728]
gi|444590610|gb|ELV65920.1| ribosomal protein S4 [Escherichia coli PA11]
gi|444591314|gb|ELV66604.1| ribosomal protein S4 [Escherichia coli 99.1805]
gi|444616793|gb|ELV90942.1| ribosomal protein S4 [Escherichia coli PA13]
gi|444618210|gb|ELV92301.1| ribosomal protein S4 [Escherichia coli PA48]
gi|444660874|gb|ELW33219.1| ribosomal protein S4 [Escherichia coli 95.0083]
gi|449314439|gb|EMD04605.1| 30S ribosomal protein S4 [Escherichia coli O08]
gi|449315692|gb|EMD05829.1| 30S ribosomal protein S4 [Escherichia coli S17]
gi|449317430|gb|EMD07519.1| 30S ribosomal protein S4 [Escherichia coli SEPT362]
Length = 206
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>gi|156932259|ref|YP_001436175.1| 30S ribosomal protein S4 [Cronobacter sakazakii ATCC BAA-894]
gi|260599616|ref|YP_003212187.1| 30S ribosomal protein S4 [Cronobacter turicensis z3032]
gi|417792972|ref|ZP_12440271.1| 30S ribosomal protein S4 [Cronobacter sakazakii E899]
gi|429088366|ref|ZP_19151098.1| SSU ribosomal protein S4p (S9e) [Cronobacter universalis NCTC 9529]
gi|449306560|ref|YP_007438916.1| 30S ribosomal protein S4 [Cronobacter sakazakii SP291]
gi|171769807|sp|A7MPF7.1|RS4_ENTS8 RecName: Full=30S ribosomal protein S4
gi|156530513|gb|ABU75339.1| hypothetical protein ESA_00030 [Cronobacter sakazakii ATCC BAA-894]
gi|260218793|emb|CBA34141.1| 30S ribosomal protein S4 [Cronobacter turicensis z3032]
gi|333952950|gb|EGL70953.1| 30S ribosomal protein S4 [Cronobacter sakazakii E899]
gi|426508169|emb|CCK16210.1| SSU ribosomal protein S4p (S9e) [Cronobacter universalis NCTC 9529]
gi|449096593|gb|AGE84627.1| 30S ribosomal protein S4 [Cronobacter sakazakii SP291]
Length = 206
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P R++ + DIN+ L
Sbjct: 180 GTFKRKPERTDLSADINEHL 199
>gi|15676094|ref|NP_273225.1| 30S ribosomal protein S4 [Neisseria meningitidis MC58]
gi|59802136|ref|YP_208848.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA 1090]
gi|121634041|ref|YP_974286.1| 30S ribosomal protein S4 [Neisseria meningitidis FAM18]
gi|161870895|ref|YP_001600070.1| 30S ribosomal protein S4 [Neisseria meningitidis 053442]
gi|218767143|ref|YP_002341655.1| 30S ribosomal protein S4 [Neisseria meningitidis Z2491]
gi|240015072|ref|ZP_04721985.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI18]
gi|240017521|ref|ZP_04724061.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA6140]
gi|240122144|ref|ZP_04735106.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID24-1]
gi|254494697|ref|ZP_05107868.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 1291]
gi|254805789|ref|YP_003084010.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha14]
gi|268593800|ref|ZP_06127967.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02]
gi|268597761|ref|ZP_06131928.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19]
gi|268600006|ref|ZP_06134173.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11]
gi|268602343|ref|ZP_06136510.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18]
gi|268604607|ref|ZP_06138774.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1]
gi|268683064|ref|ZP_06149926.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332]
gi|268683269|ref|ZP_06150131.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679]
gi|268687494|ref|ZP_06154356.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035]
gi|291042801|ref|ZP_06568542.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2]
gi|293398178|ref|ZP_06642383.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae F62]
gi|304388967|ref|ZP_07371014.1| 30S ribosomal protein S4 [Neisseria meningitidis ATCC 13091]
gi|385323316|ref|YP_005877755.1| 30S ribosomal protein S4 [Neisseria meningitidis 8013]
gi|385327531|ref|YP_005881834.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha710]
gi|385338935|ref|YP_005892808.1| 30S ribosomal protein S4 [Neisseria meningitidis WUE 2594]
gi|385339210|ref|YP_005893082.1| 30S ribosomal protein S4 [Neisseria meningitidis G2136]
gi|385342792|ref|YP_005896663.1| 30S ribosomal protein S4 [Neisseria meningitidis M01-240149]
gi|385850437|ref|YP_005896952.1| 30S ribosomal protein S4 [Neisseria meningitidis M04-240196]
gi|385852376|ref|YP_005898890.1| 30S ribosomal protein S4 [Neisseria meningitidis H44/76]
gi|385856315|ref|YP_005902827.1| 30S ribosomal protein S4 [Neisseria meningitidis NZ-05/33]
gi|416159258|ref|ZP_11605723.1| ribosomal protein S4 [Neisseria meningitidis N1568]
gi|416167762|ref|ZP_11607729.1| ribosomal protein S4 [Neisseria meningitidis OX99.30304]
gi|416176347|ref|ZP_11609597.1| ribosomal protein S4 [Neisseria meningitidis M6190]
gi|416181270|ref|ZP_11611566.1| ribosomal protein S4 [Neisseria meningitidis M13399]
gi|416186113|ref|ZP_11613562.1| ribosomal protein S4 [Neisseria meningitidis M0579]
gi|416189999|ref|ZP_11615479.1| ribosomal protein S4 [Neisseria meningitidis ES14902]
gi|416194748|ref|ZP_11617465.1| ribosomal protein S4 [Neisseria meningitidis CU385]
gi|416199866|ref|ZP_11619506.1| ribosomal protein S4 [Neisseria meningitidis 961-5945]
gi|416211567|ref|ZP_11621436.1| ribosomal protein S4 [Neisseria meningitidis M01-240013]
gi|418287371|ref|ZP_12899980.1| ribosomal protein S4 [Neisseria meningitidis NM233]
gi|418289594|ref|ZP_12901859.1| ribosomal protein S4 [Neisseria meningitidis NM220]
gi|421537205|ref|ZP_15983393.1| ribosomal protein S4 [Neisseria meningitidis 93003]
gi|421539361|ref|ZP_15985523.1| ribosomal protein S4 [Neisseria meningitidis 93004]
gi|421541508|ref|ZP_15987625.1| ribosomal protein S4 [Neisseria meningitidis NM255]
gi|421543567|ref|ZP_15989658.1| ribosomal protein S4 [Neisseria meningitidis NM140]
gi|421545627|ref|ZP_15991687.1| ribosomal protein S4 [Neisseria meningitidis NM183]
gi|421547696|ref|ZP_15993728.1| ribosomal protein S4 [Neisseria meningitidis NM2781]
gi|421549725|ref|ZP_15995735.1| ribosomal protein S4 [Neisseria meningitidis 69166]
gi|421551907|ref|ZP_15997888.1| ribosomal protein S4 [Neisseria meningitidis NM576]
gi|421553915|ref|ZP_15999866.1| ribosomal protein S4 [Neisseria meningitidis 98008]
gi|421556153|ref|ZP_16002070.1| ribosomal protein S4 [Neisseria meningitidis 80179]
gi|421558218|ref|ZP_16004102.1| ribosomal protein S4 [Neisseria meningitidis 92045]
gi|421560317|ref|ZP_16006176.1| ribosomal protein S4 [Neisseria meningitidis NM2657]
gi|421562390|ref|ZP_16008217.1| ribosomal protein S4 [Neisseria meningitidis NM2795]
gi|421564377|ref|ZP_16010176.1| ribosomal protein S4 [Neisseria meningitidis NM3081]
gi|421566636|ref|ZP_16012379.1| ribosomal protein S4 [Neisseria meningitidis NM3001]
gi|421907628|ref|ZP_16337503.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha704]
gi|433464159|ref|ZP_20421653.1| ribosomal protein S4 [Neisseria meningitidis NM422]
gi|433466279|ref|ZP_20423742.1| ribosomal protein S4 [Neisseria meningitidis 87255]
gi|433468400|ref|ZP_20425837.1| ribosomal protein S4 [Neisseria meningitidis 98080]
gi|433470478|ref|ZP_20427878.1| ribosomal protein S4 [Neisseria meningitidis 68094]
gi|433472546|ref|ZP_20429916.1| ribosomal protein S4 [Neisseria meningitidis 97021]
gi|433474639|ref|ZP_20431987.1| ribosomal protein S4 [Neisseria meningitidis 88050]
gi|433476743|ref|ZP_20434071.1| ribosomal protein S4 [Neisseria meningitidis 70012]
gi|433479002|ref|ZP_20436301.1| ribosomal protein S4 [Neisseria meningitidis 63041]
gi|433480972|ref|ZP_20438244.1| ribosomal protein S4 [Neisseria meningitidis 2006087]
gi|433483094|ref|ZP_20440332.1| ribosomal protein S4 [Neisseria meningitidis 2002038]
gi|433485194|ref|ZP_20442400.1| ribosomal protein S4 [Neisseria meningitidis 97014]
gi|433487364|ref|ZP_20444543.1| ribosomal protein S4 [Neisseria meningitidis M13255]
gi|433489538|ref|ZP_20446677.1| ribosomal protein S4 [Neisseria meningitidis NM418]
gi|433491635|ref|ZP_20448738.1| ribosomal protein S4 [Neisseria meningitidis NM586]
gi|433493758|ref|ZP_20450834.1| ribosomal protein S4 [Neisseria meningitidis NM762]
gi|433495873|ref|ZP_20452922.1| ribosomal protein S4 [Neisseria meningitidis M7089]
gi|433497873|ref|ZP_20454890.1| ribosomal protein S4 [Neisseria meningitidis M7124]
gi|433499947|ref|ZP_20456939.1| ribosomal protein S4 [Neisseria meningitidis NM174]
gi|433502013|ref|ZP_20458986.1| ribosomal protein S4 [Neisseria meningitidis NM126]
gi|433504029|ref|ZP_20460974.1| ribosomal protein S4 [Neisseria meningitidis 9506]
gi|433506219|ref|ZP_20463138.1| ribosomal protein S4 [Neisseria meningitidis 9757]
gi|433508371|ref|ZP_20465257.1| ribosomal protein S4 [Neisseria meningitidis 12888]
gi|433510436|ref|ZP_20467279.1| ribosomal protein S4 [Neisseria meningitidis 4119]
gi|433512523|ref|ZP_20469325.1| ribosomal protein S4 [Neisseria meningitidis 63049]
gi|433514737|ref|ZP_20471513.1| ribosomal protein S4 [Neisseria meningitidis 2004090]
gi|433516750|ref|ZP_20473504.1| ribosomal protein S4 [Neisseria meningitidis 96023]
gi|433518943|ref|ZP_20475670.1| ribosomal protein S4 [Neisseria meningitidis 65014]
gi|433520953|ref|ZP_20477655.1| ribosomal protein S4 [Neisseria meningitidis 61103]
gi|433523111|ref|ZP_20479784.1| ribosomal protein S4 [Neisseria meningitidis 97020]
gi|433525158|ref|ZP_20481804.1| ribosomal protein S4 [Neisseria meningitidis 69096]
gi|433527327|ref|ZP_20483940.1| ribosomal protein S4 [Neisseria meningitidis NM3652]
gi|433529418|ref|ZP_20486018.1| ribosomal protein S4 [Neisseria meningitidis NM3642]
gi|433531540|ref|ZP_20488109.1| ribosomal protein S4 [Neisseria meningitidis 2007056]
gi|433533588|ref|ZP_20490137.1| ribosomal protein S4 [Neisseria meningitidis 2001212]
gi|433535767|ref|ZP_20492287.1| ribosomal protein S4 [Neisseria meningitidis 77221]
gi|433537927|ref|ZP_20494414.1| ribosomal protein S4 [Neisseria meningitidis 70030]
gi|433540098|ref|ZP_20496555.1| ribosomal protein S4 [Neisseria meningitidis 63006]
gi|54039509|sp|P66561.1|RS4_NEIMB RecName: Full=30S ribosomal protein S4
gi|54041962|sp|P66560.1|RS4_NEIMA RecName: Full=30S ribosomal protein S4
gi|75507306|sp|Q5F5V1.1|RS4_NEIG1 RecName: Full=30S ribosomal protein S4
gi|152112237|sp|A1KRJ8.1|RS4_NEIMF RecName: Full=30S ribosomal protein S4
gi|189045388|sp|A9M3U1.1|RS4_NEIM0 RecName: Full=30S ribosomal protein S4
gi|7225385|gb|AAF40624.1| 30S ribosomal protein S4 [Neisseria meningitidis MC58]
gi|59719031|gb|AAW90436.1| putative 30S ribosomal protein S4 [Neisseria gonorrhoeae FA 1090]
gi|120865747|emb|CAM09476.1| 30S ribosomal protein S4 [Neisseria meningitidis FAM18]
gi|121051151|emb|CAM07422.1| 30S ribosomal protein S4 [Neisseria meningitidis Z2491]
gi|161596448|gb|ABX74108.1| 30S ribosomal protein S4 [Neisseria meningitidis 053442]
gi|226513737|gb|EEH63082.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 1291]
gi|254669331|emb|CBA08372.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha14]
gi|254670762|emb|CBA07036.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha153]
gi|254672692|emb|CBA06587.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha275]
gi|261391703|emb|CAX49152.1| 30S ribosomal protein S4 [Neisseria meningitidis 8013]
gi|268547189|gb|EEZ42607.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02]
gi|268551549|gb|EEZ46568.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19]
gi|268584137|gb|EEZ48813.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11]
gi|268586474|gb|EEZ51150.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18]
gi|268588738|gb|EEZ53414.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1]
gi|268623348|gb|EEZ55748.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332]
gi|268623553|gb|EEZ55953.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679]
gi|268627778|gb|EEZ60178.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035]
gi|291013235|gb|EFE05201.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2]
gi|291611441|gb|EFF40511.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae F62]
gi|304337101|gb|EFM03288.1| 30S ribosomal protein S4 [Neisseria meningitidis ATCC 13091]
gi|308388383|gb|ADO30703.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha710]
gi|319411349|emb|CBY91760.1| 30S ribosomal protein S4 [Neisseria meningitidis WUE 2594]
gi|325129086|gb|EGC51935.1| ribosomal protein S4 [Neisseria meningitidis N1568]
gi|325131057|gb|EGC53781.1| ribosomal protein S4 [Neisseria meningitidis OX99.30304]
gi|325133079|gb|EGC55751.1| ribosomal protein S4 [Neisseria meningitidis M6190]
gi|325135173|gb|EGC57799.1| ribosomal protein S4 [Neisseria meningitidis M13399]
gi|325137225|gb|EGC59820.1| ribosomal protein S4 [Neisseria meningitidis M0579]
gi|325139057|gb|EGC61603.1| ribosomal protein S4 [Neisseria meningitidis ES14902]
gi|325141180|gb|EGC63680.1| ribosomal protein S4 [Neisseria meningitidis CU385]
gi|325143257|gb|EGC65596.1| ribosomal protein S4 [Neisseria meningitidis 961-5945]
gi|325145364|gb|EGC67641.1| ribosomal protein S4 [Neisseria meningitidis M01-240013]
gi|325197454|gb|ADY92910.1| ribosomal protein S4 [Neisseria meningitidis G2136]
gi|325199380|gb|ADY94835.1| ribosomal protein S4 [Neisseria meningitidis H44/76]
gi|325202998|gb|ADY98452.1| ribosomal protein S4 [Neisseria meningitidis M01-240149]
gi|325205260|gb|ADZ00713.1| ribosomal protein S4 [Neisseria meningitidis M04-240196]
gi|325207204|gb|ADZ02656.1| ribosomal protein S4 [Neisseria meningitidis NZ-05/33]
gi|372203207|gb|EHP16915.1| ribosomal protein S4 [Neisseria meningitidis NM220]
gi|372203849|gb|EHP17450.1| ribosomal protein S4 [Neisseria meningitidis NM233]
gi|389604783|emb|CCA43709.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha522]
gi|393291297|emb|CCI73500.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha704]
gi|402319682|gb|EJU55187.1| ribosomal protein S4 [Neisseria meningitidis 93003]
gi|402319877|gb|EJU55381.1| ribosomal protein S4 [Neisseria meningitidis NM255]
gi|402321941|gb|EJU57412.1| ribosomal protein S4 [Neisseria meningitidis 93004]
gi|402325855|gb|EJU61262.1| ribosomal protein S4 [Neisseria meningitidis NM183]
gi|402326409|gb|EJU61811.1| ribosomal protein S4 [Neisseria meningitidis NM140]
gi|402327716|gb|EJU63103.1| ribosomal protein S4 [Neisseria meningitidis NM2781]
gi|402331676|gb|EJU67008.1| ribosomal protein S4 [Neisseria meningitidis 69166]
gi|402332823|gb|EJU68141.1| ribosomal protein S4 [Neisseria meningitidis NM576]
gi|402333951|gb|EJU69246.1| ribosomal protein S4 [Neisseria meningitidis 98008]
gi|402338006|gb|EJU73245.1| ribosomal protein S4 [Neisseria meningitidis 80179]
gi|402338612|gb|EJU73843.1| ribosomal protein S4 [Neisseria meningitidis 92045]
gi|402340490|gb|EJU75690.1| ribosomal protein S4 [Neisseria meningitidis NM2657]
gi|402343046|gb|EJU78201.1| ribosomal protein S4 [Neisseria meningitidis NM2795]
gi|402345060|gb|EJU80187.1| ribosomal protein S4 [Neisseria meningitidis NM3001]
gi|402345974|gb|EJU81078.1| ribosomal protein S4 [Neisseria meningitidis NM3081]
gi|432205067|gb|ELK61098.1| ribosomal protein S4 [Neisseria meningitidis 87255]
gi|432205969|gb|ELK61984.1| ribosomal protein S4 [Neisseria meningitidis NM422]
gi|432206486|gb|ELK62493.1| ribosomal protein S4 [Neisseria meningitidis 98080]
gi|432211911|gb|ELK67855.1| ribosomal protein S4 [Neisseria meningitidis 68094]
gi|432212430|gb|ELK68368.1| ribosomal protein S4 [Neisseria meningitidis 97021]
gi|432212699|gb|ELK68634.1| ribosomal protein S4 [Neisseria meningitidis 88050]
gi|432217896|gb|ELK73761.1| ribosomal protein S4 [Neisseria meningitidis 70012]
gi|432218976|gb|ELK74828.1| ribosomal protein S4 [Neisseria meningitidis 63041]
gi|432219325|gb|ELK75172.1| ribosomal protein S4 [Neisseria meningitidis 2006087]
gi|432223540|gb|ELK79320.1| ribosomal protein S4 [Neisseria meningitidis 2002038]
gi|432224654|gb|ELK80417.1| ribosomal protein S4 [Neisseria meningitidis 97014]
gi|432226129|gb|ELK81862.1| ribosomal protein S4 [Neisseria meningitidis M13255]
gi|432230534|gb|ELK86209.1| ribosomal protein S4 [Neisseria meningitidis NM418]
gi|432231320|gb|ELK86987.1| ribosomal protein S4 [Neisseria meningitidis NM586]
gi|432231936|gb|ELK87591.1| ribosomal protein S4 [Neisseria meningitidis NM762]
gi|432237056|gb|ELK92656.1| ribosomal protein S4 [Neisseria meningitidis M7124]
gi|432237515|gb|ELK93108.1| ribosomal protein S4 [Neisseria meningitidis M7089]
gi|432237857|gb|ELK93446.1| ribosomal protein S4 [Neisseria meningitidis NM174]
gi|432243412|gb|ELK98923.1| ribosomal protein S4 [Neisseria meningitidis 9506]
gi|432243768|gb|ELK99274.1| ribosomal protein S4 [Neisseria meningitidis NM126]
gi|432244235|gb|ELK99730.1| ribosomal protein S4 [Neisseria meningitidis 9757]
gi|432250022|gb|ELL05420.1| ribosomal protein S4 [Neisseria meningitidis 12888]
gi|432250278|gb|ELL05673.1| ribosomal protein S4 [Neisseria meningitidis 63049]
gi|432250504|gb|ELL05897.1| ribosomal protein S4 [Neisseria meningitidis 4119]
gi|432256401|gb|ELL11724.1| ribosomal protein S4 [Neisseria meningitidis 2004090]
gi|432256542|gb|ELL11864.1| ribosomal protein S4 [Neisseria meningitidis 96023]
gi|432256908|gb|ELL12219.1| ribosomal protein S4 [Neisseria meningitidis 65014]
gi|432262737|gb|ELL17972.1| ribosomal protein S4 [Neisseria meningitidis 61103]
gi|432262984|gb|ELL18215.1| ribosomal protein S4 [Neisseria meningitidis 97020]
gi|432263306|gb|ELL18526.1| ribosomal protein S4 [Neisseria meningitidis 69096]
gi|432267396|gb|ELL22574.1| ribosomal protein S4 [Neisseria meningitidis NM3652]
gi|432269560|gb|ELL24717.1| ribosomal protein S4 [Neisseria meningitidis 2007056]
gi|432270069|gb|ELL25216.1| ribosomal protein S4 [Neisseria meningitidis NM3642]
gi|432274141|gb|ELL29234.1| ribosomal protein S4 [Neisseria meningitidis 2001212]
gi|432276067|gb|ELL31129.1| ribosomal protein S4 [Neisseria meningitidis 70030]
gi|432276778|gb|ELL31833.1| ribosomal protein S4 [Neisseria meningitidis 77221]
gi|432278079|gb|ELL33123.1| ribosomal protein S4 [Neisseria meningitidis 63006]
Length = 206
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++K GD++SVREKAKKQ RI +L L+ W++VDA K+E
Sbjct: 120 HKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE DIN+ L
Sbjct: 180 GVFKNMPDRSELTGDINEQL 199
>gi|365846746|ref|ZP_09387246.1| ribosomal protein S4 [Yokenella regensburgei ATCC 43003]
gi|364573476|gb|EHM50972.1| ribosomal protein S4 [Yokenella regensburgei ATCC 43003]
Length = 206
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++SVREKAKKQ+R+ +LELSE +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSVREKAKKQSRVKAALELSEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRQPERSDLSADINEHL 199
>gi|422007057|ref|ZP_16354044.1| 30S ribosomal protein S4 [Providencia rettgeri Dmel1]
gi|414097903|gb|EKT59555.1| 30S ribosomal protein S4 [Providencia rettgeri Dmel1]
Length = 206
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RM+G+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+EARQ++S
Sbjct: 60 KVRRMFGVLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D+ISVREKAKKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|270264349|ref|ZP_06192615.1| 30S ribosomal protein S4 [Serratia odorifera 4Rx13]
gi|270041485|gb|EFA14583.1| 30S ribosomal protein S4 [Serratia odorifera 4Rx13]
Length = 206
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ SLEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRMPERTDLSADINEHL 199
>gi|349611070|ref|ZP_08890384.1| 30S ribosomal protein S4 [Neisseria sp. GT4A_CT1]
gi|348614958|gb|EGY64493.1| 30S ribosomal protein S4 [Neisseria sp. GT4A_CT1]
Length = 206
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKLDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW++VD K+E
Sbjct: 120 HKAITVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDVDKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE DIN+ L
Sbjct: 180 GVFKNMPDRSELTGDINEQL 199
>gi|333929442|ref|YP_004503021.1| 30S ribosomal protein S4 [Serratia sp. AS12]
gi|333934395|ref|YP_004507973.1| 30S ribosomal protein S4 [Serratia plymuthica AS9]
gi|386331265|ref|YP_006027435.1| 30S ribosomal protein S4 [Serratia sp. AS13]
gi|333476002|gb|AEF47712.1| ribosomal protein S4 [Serratia plymuthica AS9]
gi|333493502|gb|AEF52664.1| ribosomal protein S4 [Serratia sp. AS12]
gi|333963598|gb|AEG30371.1| ribosomal protein S4 [Serratia sp. AS13]
Length = 206
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ SLEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRMPERTDLSADINEHL 199
>gi|348028118|ref|YP_004870804.1| 30S ribosomal protein S4 [Glaciecola nitratireducens FR1064]
gi|347945461|gb|AEP28811.1| 30S ribosomal protein S4 [Glaciecola nitratireducens FR1064]
Length = 206
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDQAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI S+ +K D+++VREKAKKQ RI ++LEL++ +W+ VD KME
Sbjct: 120 HKAIVVNGKVVNIPSFNVKAEDVVAVREKAKKQARIVSALELADQREKPTWLEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRVPERTDLSADINEQL 199
>gi|85060232|ref|YP_455934.1| 30S ribosomal protein S4 [Sodalis glossinidius str. 'morsitans']
gi|123518718|sp|Q2NQP6.1|RS4_SODGM RecName: Full=30S ribosomal protein S4
gi|84780752|dbj|BAE75529.1| 30S ribosomal protein S4 [Sodalis glossinidius str. 'morsitans']
Length = 206
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ SLEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVTPNDVVSIREKAKKQSRVRASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|389873957|ref|YP_006381376.1| 30S ribosomal protein S4 [Advenella kashmirensis WT001]
gi|388539206|gb|AFK64394.1| 30S ribosomal protein S4 [Advenella kashmirensis WT001]
Length = 207
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREGIDLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGIDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMG+ STR+EARQL++
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGYGSTRAEARQLVA 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A +N +I S + GD++SVREK+K Q RI S++L+ + W+ VD K+
Sbjct: 121 HGAIELNGHKADIPSMLVSSGDVVSVREKSKTQARIKESMDLASGNGLPQWVEVDTSKLT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ +
Sbjct: 181 GTFKQAPDRADVARDINESM 200
>gi|319778700|ref|YP_004129613.1| 30S ribosomal protein S4 [Taylorella equigenitalis MCE9]
gi|397662462|ref|YP_006503162.1| 30S ribosomal protein S4 [Taylorella equigenitalis ATCC 35865]
gi|317108724|gb|ADU91470.1| SSU ribosomal protein S4p (S9e) [Taylorella equigenitalis MCE9]
gi|394350641|gb|AFN36555.1| 30S ribosomal protein S4 [Taylorella equigenitalis ATCC 35865]
gi|399115319|emb|CCG18118.1| 30S ribosomal protein S4 [Taylorella equigenitalis 14/56]
Length = 207
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREGIDLFLKSARR LDSKCK + +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGIDLFLKSARRPLDSKCKFESKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A +N K +I S + GD++SVREK+K Q RI +SLEL+E + W++V+ K+ +
Sbjct: 121 HGAIELNGKKADIPSMIVNAGDVVSVREKSKGQIRIKDSLELAESLSFPEWVSVEPKEFK 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQVPDRADVARDINESL 200
>gi|415943237|ref|ZP_11556037.1| DNA-directed RNA polymerase, subunit alpha [Herbaspirillum
frisingense GSF30]
gi|407758753|gb|EKF68537.1| DNA-directed RNA polymerase, subunit alpha [Herbaspirillum
frisingense GSF30]
Length = 320
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/303 (51%), Positives = 184/303 (60%), Gaps = 76/303 (25%)
Query: 200 LKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEY 259
+KPRII+V+TL HAKV+MEPFERGYG+TLGNALRRVLLS+M G APTEV I+G +HEY
Sbjct: 1 MKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAGVVHEY 60
Query: 260 SSLEGVQEDIIDIILNL---------------------KGVIL----------KLYNRDY 288
SSL+GVQED++DI+LNL +G +L +L N D+
Sbjct: 61 SSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVELINPDH 120
Query: 289 AILNLKKFGKC---------------------------------------------VVLA 303
I NL GK V +
Sbjct: 121 VIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVSYAVES 180
Query: 304 SDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEK 363
+ +E +D++ + N + EEAIRQSARVLVDQLNVFAALE T E S +
Sbjct: 181 ARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAPSRAPQ 240
Query: 364 VDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423
VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE+LA
Sbjct: 241 VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEIKEVLA 300
Query: 424 SRG 426
SRG
Sbjct: 301 SRG 303
>gi|197364265|ref|YP_002143902.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|226695073|sp|B5BGW2.1|RS4_SALPK RecName: Full=30S ribosomal protein S4
gi|197095742|emb|CAR61312.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 206
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY+I P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQISPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K +P RS+ + DIN+ L
Sbjct: 180 GTYKRKPERSDLSADINEHL 199
>gi|183600728|ref|ZP_02962221.1| hypothetical protein PROSTU_04324 [Providencia stuartii ATCC 25827]
gi|212709003|ref|ZP_03317131.1| hypothetical protein PROVALCAL_00035 [Providencia alcalifaciens DSM
30120]
gi|268593565|ref|ZP_06127786.1| ribosomal protein S4 [Providencia rettgeri DSM 1131]
gi|386743656|ref|YP_006216835.1| 30S ribosomal protein S4 [Providencia stuartii MRSN 2154]
gi|422020855|ref|ZP_16367381.1| 30S ribosomal protein S4 [Providencia alcalifaciens Dmel2]
gi|188019708|gb|EDU57748.1| ribosomal protein S4 [Providencia stuartii ATCC 25827]
gi|212688369|gb|EEB47897.1| hypothetical protein PROVALCAL_00035 [Providencia alcalifaciens DSM
30120]
gi|291310842|gb|EFE51295.1| ribosomal protein S4 [Providencia rettgeri DSM 1131]
gi|384480349|gb|AFH94144.1| 30S ribosomal protein S4 [Providencia stuartii MRSN 2154]
gi|414100350|gb|EKT61969.1| 30S ribosomal protein S4 [Providencia alcalifaciens Dmel2]
Length = 206
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+EARQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D+ISVREKAKKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|271502222|ref|YP_003335248.1| 30S ribosomal protein S4 [Dickeya dadantii Ech586]
gi|270345777|gb|ACZ78542.1| ribosomal protein S4 [Dickeya dadantii Ech586]
Length = 206
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|337281268|ref|YP_004620740.1| 30S ribosomal protein S4 [Ramlibacter tataouinensis TTB310]
gi|334732345|gb|AEG94721.1| Candidate 30S ribosomal protein S4 [Ramlibacter tataouinensis
TTB310]
Length = 207
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 154/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSKPGQHGRTSGQRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E AR KG +G +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEAARRKGNSGANLLLLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+I+VR+K+KKQ R+ +L+L++ +W+ V+A K E
Sbjct: 121 HKAITVNGQAVNIPSYMVKTGDVIAVRDKSKKQNRVVEALQLAQQVGLPAWVEVNADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DI + L
Sbjct: 181 GTFKKVPDRDEFGADIKEAL 200
>gi|410622866|ref|ZP_11333687.1| small subunit ribosomal protein S4 [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410157541|dbj|GAC29061.1| small subunit ribosomal protein S4 [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 206
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTPPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI S+ +K D+++VREKAKKQ RI ++LEL++ +W+ VD KME
Sbjct: 120 HKAVVVNGKVVNIPSFNVKAEDVVAVREKAKKQARIVSALELADQREKPTWLEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRVPERTDLSADINEQL 199
>gi|296313389|ref|ZP_06863330.1| ribosomal protein S4 [Neisseria polysaccharea ATCC 43768]
gi|296840099|gb|EFH24037.1| ribosomal protein S4 [Neisseria polysaccharea ATCC 43768]
Length = 206
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD++SVREKAKKQ RI +L L+ W++VDA K+E
Sbjct: 120 HKAIAVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE DIN+ L
Sbjct: 180 GVFKNMPDRSELTGDINEQL 199
>gi|347818120|ref|ZP_08871554.1| 30S ribosomal protein S4 [Verminephrobacter aporrectodeae subsp.
tuberculatae At4]
Length = 207
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 154/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF +G TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFETAESRRGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNIASY ++ D++SVREK+++Q R+ +L+L+ +W+ VDA+K++
Sbjct: 121 HKAITVNGKPVNIASYLVRSNDLVSVREKSRQQARVVEALQLAAQVGMPAWVNVDAEKVK 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVF P+R EF DIN+ L
Sbjct: 181 GVFNRVPDRDEFGADINESL 200
>gi|109897338|ref|YP_660593.1| 30S ribosomal protein S4 [Pseudoalteromonas atlantica T6c]
gi|332307746|ref|YP_004435597.1| 30S ribosomal protein S4 [Glaciecola sp. 4H-3-7+YE-5]
gi|410624850|ref|ZP_11335639.1| small subunit ribosomal protein S4 [Glaciecola mesophila KMM 241]
gi|410642220|ref|ZP_11352735.1| small subunit ribosomal protein S4 [Glaciecola chathamensis S18K6]
gi|410645000|ref|ZP_11355469.1| small subunit ribosomal protein S4 [Glaciecola agarilytica NO2]
gi|122972198|sp|Q15X49.1|RS4_PSEA6 RecName: Full=30S ribosomal protein S4
gi|109699619|gb|ABG39539.1| SSU ribosomal protein S4P [Pseudoalteromonas atlantica T6c]
gi|332175075|gb|AEE24329.1| ribosomal protein S4 [Glaciecola sp. 4H-3-7+YE-5]
gi|410135510|dbj|GAC03868.1| small subunit ribosomal protein S4 [Glaciecola agarilytica NO2]
gi|410138170|dbj|GAC10922.1| small subunit ribosomal protein S4 [Glaciecola chathamensis S18K6]
gi|410155377|dbj|GAC22408.1| small subunit ribosomal protein S4 [Glaciecola mesophila KMM 241]
Length = 206
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYR+GF+STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRIGFASTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VN+ S+ + D++SVREKAKKQ RI ++LEL+E +WI VD+KKME
Sbjct: 120 HKAILVNGQVVNVPSFNVSADDVVSVREKAKKQARIVSALELAEQREKPTWIEVDSKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + +IN+ L
Sbjct: 180 GTFKRVPERTDLSAEINEQL 199
>gi|261400076|ref|ZP_05986201.1| ribosomal protein S4 [Neisseria lactamica ATCC 23970]
gi|313667465|ref|YP_004047749.1| 30S ribosomal protein S4 [Neisseria lactamica 020-06]
gi|421863373|ref|ZP_16295071.1| 30S ribosomal protein S4 [Neisseria lactamica Y92-1009]
gi|269210301|gb|EEZ76756.1| ribosomal protein S4 [Neisseria lactamica ATCC 23970]
gi|309379135|emb|CBX22266.1| 30S ribosomal protein S4 [Neisseria lactamica Y92-1009]
gi|313004927|emb|CBN86353.1| 30S ribosomal protein S4 [Neisseria lactamica 020-06]
Length = 206
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKLDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW+ VDA K+E
Sbjct: 120 HKAIAVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAIQIGLPSWVAVDADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RSE DIN+ L
Sbjct: 180 GVFKNMPDRSELTGDINEQL 199
>gi|237728631|ref|ZP_04559112.1| ribosomal protein S4 [Citrobacter sp. 30_2]
gi|283835713|ref|ZP_06355454.1| hypothetical protein CIT292_10106 [Citrobacter youngae ATCC 29220]
gi|365102961|ref|ZP_09333067.1| 30S ribosomal protein S4 [Citrobacter freundii 4_7_47CFAA]
gi|395231855|ref|ZP_10410132.1| 30S ribosomal subunit protein S4 [Citrobacter sp. A1]
gi|421847935|ref|ZP_16281063.1| 30S ribosomal protein S4 [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|424734270|ref|ZP_18162812.1| dna-directed rna alpha subunit [Citrobacter sp. L17]
gi|226909253|gb|EEH95171.1| ribosomal protein S4 [Citrobacter sp. 30_2]
gi|291068393|gb|EFE06502.1| ribosomal protein S4 [Citrobacter youngae ATCC 29220]
gi|363645812|gb|EHL85067.1| 30S ribosomal protein S4 [Citrobacter freundii 4_7_47CFAA]
gi|394714318|gb|EJF20297.1| 30S ribosomal subunit protein S4 [Citrobacter sp. A1]
gi|411770703|gb|EKS54459.1| 30S ribosomal protein S4 [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|422892084|gb|EKU31961.1| dna-directed rna alpha subunit [Citrobacter sp. L17]
gi|455644216|gb|EMF23321.1| 30S ribosomal protein S4 [Citrobacter freundii GTC 09479]
Length = 206
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>gi|322831096|ref|YP_004211123.1| 30S ribosomal protein S4 [Rahnella sp. Y9602]
gi|384256264|ref|YP_005400198.1| 30S ribosomal protein S4 [Rahnella aquatilis HX2]
gi|321166297|gb|ADW71996.1| ribosomal protein S4 [Rahnella sp. Y9602]
gi|380752240|gb|AFE56631.1| 30S ribosomal protein S4 [Rahnella aquatilis HX2]
Length = 206
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LE+QFR Y+ E ARLKG TGE +L+LLE R DNV+YRMGF +TR+E+RQL+S
Sbjct: 60 KVRRTYGVLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVIYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ ++DIN+ L
Sbjct: 180 GVFKRMPERTDLSSDINEHL 199
>gi|383817270|ref|ZP_09972647.1| 30S ribosomal protein S4 [Serratia sp. M24T3]
gi|383293890|gb|EIC82247.1| 30S ribosomal protein S4 [Serratia sp. M24T3]
Length = 206
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LE+QFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRTYGVLERQFRNYYQEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + DIN+ L
Sbjct: 180 GQFKRNPERADLSADINEHL 199
>gi|358450678|ref|ZP_09161132.1| 30S ribosomal protein S4 [Marinobacter manganoxydans MnI7-9]
gi|357225155|gb|EHJ03666.1| 30S ribosomal protein S4 [Marinobacter manganoxydans MnI7-9]
Length = 206
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKC ++ PG HG G R S+YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIETPPGMHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR KG TGE +L+LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARGKGATGENLLQLLEGRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI SY+++PGD++S+REKAK Q R+ +L+LS P SW+ VDA KM
Sbjct: 120 HKAILVNDKPVNIPSYQVRPGDVVSLREKAKNQLRVKGALDLSASRAPVSWVEVDANKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+KS P R+E DIN+ L
Sbjct: 180 GVYKSVPERTELPADINENL 199
>gi|16766705|ref|NP_462320.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56415335|ref|YP_152410.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181921|ref|YP_218338.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161506031|ref|YP_001573143.1| 30S ribosomal protein S4 [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|168264703|ref|ZP_02686676.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168468027|ref|ZP_02701864.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194445278|ref|YP_002042667.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194447938|ref|YP_002047440.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472917|ref|ZP_03078901.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194734012|ref|YP_002116359.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197247634|ref|YP_002148336.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197262156|ref|ZP_03162230.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|198244329|ref|YP_002217379.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387686|ref|ZP_03214298.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204931411|ref|ZP_03222080.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205354956|ref|YP_002228757.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858658|ref|YP_002245309.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|238913869|ref|ZP_04657706.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|340000955|ref|YP_004731839.1| 30S ribosomal protein S4 [Salmonella bongori NCTC 12419]
gi|375003276|ref|ZP_09727615.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|375116261|ref|ZP_09761431.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|375120893|ref|ZP_09766060.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375125855|ref|ZP_09771019.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378446794|ref|YP_005234426.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378452246|ref|YP_005239606.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378701310|ref|YP_005183268.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378986010|ref|YP_005249166.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378990721|ref|YP_005253885.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379702675|ref|YP_005244403.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|394894450|ref|YP_001590406.2| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|394894986|ref|YP_002639010.2| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|409247127|ref|YP_006887827.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416424225|ref|ZP_11691482.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416435005|ref|ZP_11697975.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416437066|ref|ZP_11698591.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416448812|ref|ZP_11706516.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416453449|ref|ZP_11709595.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416461752|ref|ZP_11715454.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416462981|ref|ZP_11715752.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416476102|ref|ZP_11720946.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416489892|ref|ZP_11726494.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416502479|ref|ZP_11732791.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416510261|ref|ZP_11736936.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416516412|ref|ZP_11739094.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416525266|ref|ZP_11741528.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416539539|ref|ZP_11749999.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416543710|ref|ZP_11752435.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416552254|ref|ZP_11756977.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416559514|ref|ZP_11760739.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416567109|ref|ZP_11764192.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416575681|ref|ZP_11768497.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416582075|ref|ZP_11772413.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416595291|ref|ZP_11781104.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416602544|ref|ZP_11785340.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416606246|ref|ZP_11787620.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416613513|ref|ZP_11792067.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618629|ref|ZP_11794642.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416635000|ref|ZP_11802851.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416642434|ref|ZP_11805879.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416647717|ref|ZP_11808547.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416659325|ref|ZP_11814762.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416668377|ref|ZP_11818874.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416672421|ref|ZP_11820683.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416692158|ref|ZP_11826358.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416704447|ref|ZP_11830269.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714230|ref|ZP_11837622.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720719|ref|ZP_11842320.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416721782|ref|ZP_11842903.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416729771|ref|ZP_11848256.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416741943|ref|ZP_11855469.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416747474|ref|ZP_11858248.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416754124|ref|ZP_11861143.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763320|ref|ZP_11867009.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416766424|ref|ZP_11869119.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417470148|ref|ZP_12166376.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|418482252|ref|ZP_13051274.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418489959|ref|ZP_13056517.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418495181|ref|ZP_13061625.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418498816|ref|ZP_13065229.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503533|ref|ZP_13069893.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418510110|ref|ZP_13076398.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418515118|ref|ZP_13081306.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418525403|ref|ZP_13091384.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418760125|ref|ZP_13316286.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767919|ref|ZP_13323975.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418768871|ref|ZP_13324913.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418774085|ref|ZP_13330056.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782112|ref|ZP_13337979.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418784170|ref|ZP_13340008.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418789946|ref|ZP_13345728.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418792619|ref|ZP_13348360.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418800378|ref|ZP_13356036.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418802092|ref|ZP_13357723.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418806619|ref|ZP_13362189.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418810781|ref|ZP_13366318.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418818456|ref|ZP_13373928.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823806|ref|ZP_13379207.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418827182|ref|ZP_13382341.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418829198|ref|ZP_13384185.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837906|ref|ZP_13392764.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841700|ref|ZP_13396517.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418846632|ref|ZP_13401399.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851526|ref|ZP_13406237.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854717|ref|ZP_13409383.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418861130|ref|ZP_13415699.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418865690|ref|ZP_13420163.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418870610|ref|ZP_13425024.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419730660|ref|ZP_14257595.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419734825|ref|ZP_14261709.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419739528|ref|ZP_14266274.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743275|ref|ZP_14269940.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419750266|ref|ZP_14276730.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|419787954|ref|ZP_14313655.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419794894|ref|ZP_14320500.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421356765|ref|ZP_15807084.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421365482|ref|ZP_15815703.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421365553|ref|ZP_15815770.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374536|ref|ZP_15824666.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421374600|ref|ZP_15824727.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421383194|ref|ZP_15833234.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421387351|ref|ZP_15837353.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421388553|ref|ZP_15838542.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421392768|ref|ZP_15842718.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400240|ref|ZP_15850129.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421403421|ref|ZP_15853269.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421408089|ref|ZP_15857892.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412286|ref|ZP_15862044.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421418317|ref|ZP_15868021.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421419683|ref|ZP_15869371.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421428054|ref|ZP_15877670.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421432537|ref|ZP_15882107.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421437149|ref|ZP_15886672.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441592|ref|ZP_15891059.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445498|ref|ZP_15894923.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421450088|ref|ZP_15899466.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421571768|ref|ZP_16017436.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421575467|ref|ZP_16021080.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421578896|ref|ZP_16024466.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421586053|ref|ZP_16031536.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|421882963|ref|ZP_16314211.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|422027645|ref|ZP_16373977.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422032687|ref|ZP_16378786.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427554661|ref|ZP_18929279.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427572298|ref|ZP_18933889.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427593813|ref|ZP_18938797.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427617911|ref|ZP_18943708.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427641333|ref|ZP_18948562.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427657673|ref|ZP_18953309.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427662891|ref|ZP_18958181.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427678048|ref|ZP_18963088.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427800766|ref|ZP_18968468.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436592470|ref|ZP_20512228.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436792994|ref|ZP_20521614.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436796401|ref|ZP_20522826.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436810094|ref|ZP_20529311.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436812087|ref|ZP_20530744.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846472|ref|ZP_20539309.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436848353|ref|ZP_20540060.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436854755|ref|ZP_20544219.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436861657|ref|ZP_20548672.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436874402|ref|ZP_20556955.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436883839|ref|ZP_20562083.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436890487|ref|ZP_20565816.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436892226|ref|ZP_20566654.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903390|ref|ZP_20573812.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436907853|ref|ZP_20575609.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436921654|ref|ZP_20583925.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436929875|ref|ZP_20588444.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436931797|ref|ZP_20589238.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436939633|ref|ZP_20593913.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436949821|ref|ZP_20599595.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436965080|ref|ZP_20606475.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436975460|ref|ZP_20611597.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436984145|ref|ZP_20614358.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436988803|ref|ZP_20616312.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437011576|ref|ZP_20624544.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437019126|ref|ZP_20626997.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437034177|ref|ZP_20632917.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437046808|ref|ZP_20638601.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437052928|ref|ZP_20642209.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437055205|ref|ZP_20643411.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437062830|ref|ZP_20647718.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077265|ref|ZP_20655421.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437085877|ref|ZP_20660301.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437096186|ref|ZP_20664804.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437102103|ref|ZP_20666420.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437121904|ref|ZP_20671990.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437130182|ref|ZP_20676476.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437138289|ref|ZP_20680899.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437147462|ref|ZP_20686852.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437156067|ref|ZP_20692025.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437160456|ref|ZP_20694641.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437164656|ref|ZP_20697238.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437179339|ref|ZP_20705318.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437180956|ref|ZP_20706275.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437206881|ref|ZP_20712575.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437263666|ref|ZP_20719612.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437268888|ref|ZP_20722202.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437279813|ref|ZP_20727799.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437289704|ref|ZP_20731137.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437305345|ref|ZP_20734220.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437324941|ref|ZP_20739960.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437343410|ref|ZP_20745774.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437384636|ref|ZP_20750620.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412495|ref|ZP_20753385.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437442472|ref|ZP_20757858.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437462144|ref|ZP_20762537.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437471813|ref|ZP_20765318.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437496235|ref|ZP_20773175.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437501612|ref|ZP_20774368.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437544060|ref|ZP_20782778.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437560378|ref|ZP_20786023.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574293|ref|ZP_20789698.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437585637|ref|ZP_20792994.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437599176|ref|ZP_20796823.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437618299|ref|ZP_20803100.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437635192|ref|ZP_20807088.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437664872|ref|ZP_20814447.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437686071|ref|ZP_20819285.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437700760|ref|ZP_20823932.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437717800|ref|ZP_20828398.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437737183|ref|ZP_20832915.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437763532|ref|ZP_20834918.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437803227|ref|ZP_20838516.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437822763|ref|ZP_20843473.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437917385|ref|ZP_20850561.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437993035|ref|ZP_20853859.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438094319|ref|ZP_20861654.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438104935|ref|ZP_20866090.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438113836|ref|ZP_20869775.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438140309|ref|ZP_20874911.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440763498|ref|ZP_20942537.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766144|ref|ZP_20945144.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440772249|ref|ZP_20951155.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445135329|ref|ZP_21383168.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445144560|ref|ZP_21387157.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445155484|ref|ZP_21392314.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445174202|ref|ZP_21396987.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445181051|ref|ZP_21398235.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445232949|ref|ZP_21406228.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445302620|ref|ZP_21411512.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445336409|ref|ZP_21415700.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445348665|ref|ZP_21419694.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445364231|ref|ZP_21424895.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|452122771|ref|YP_007473019.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|3914907|sp|O54297.3|RS4_SALTY RecName: Full=30S ribosomal protein S4
gi|62287196|sp|Q5PK09.1|RS4_SALPA RecName: Full=30S ribosomal protein S4
gi|75505522|sp|Q57J55.1|RS4_SALCH RecName: Full=30S ribosomal protein S4
gi|189045396|sp|A9MN71.1|RS4_SALAR RecName: Full=30S ribosomal protein S4
gi|226695074|sp|B4TXB9.1|RS4_SALSV RecName: Full=30S ribosomal protein S4
gi|226699114|sp|B5F7S2.1|RS4_SALA4 RecName: Full=30S ribosomal protein S4
gi|226699115|sp|B5FJJ1.1|RS4_SALDC RecName: Full=30S ribosomal protein S4
gi|226699116|sp|B5R1F3.1|RS4_SALEP RecName: Full=30S ribosomal protein S4
gi|226699117|sp|B5RH39.1|RS4_SALG2 RecName: Full=30S ribosomal protein S4
gi|226699118|sp|B4TJY6.1|RS4_SALHS RecName: Full=30S ribosomal protein S4
gi|226699119|sp|B4SUR7.1|RS4_SALNS RecName: Full=30S ribosomal protein S4
gi|2780215|emb|CAA11203.1| ribosomal protein S4 [Salmonella typhimurium]
gi|16421972|gb|AAL22279.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56129592|gb|AAV79098.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62129554|gb|AAX67257.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|160867378|gb|ABX24001.1| hypothetical protein SARI_04212 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|194403941|gb|ACF64163.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194406242|gb|ACF66461.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194459281|gb|EDX48120.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194709514|gb|ACF88735.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195628917|gb|EDX48327.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197211337|gb|ACH48734.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197240411|gb|EDY23031.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197938845|gb|ACH76178.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199604784|gb|EDZ03329.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204319839|gb|EDZ05049.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205274737|emb|CAR39793.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205346870|gb|EDZ33501.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206710461|emb|CAR34819.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261248573|emb|CBG26411.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995625|gb|ACY90510.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159959|emb|CBW19478.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914439|dbj|BAJ38413.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320087861|emb|CBY97624.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322615043|gb|EFY11967.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617330|gb|EFY14231.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625552|gb|EFY22377.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626394|gb|EFY23203.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632094|gb|EFY28847.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635027|gb|EFY31750.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643272|gb|EFY39839.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646644|gb|EFY43151.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649990|gb|EFY46409.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652707|gb|EFY49047.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659536|gb|EFY55780.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665522|gb|EFY61709.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670416|gb|EFY66555.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670489|gb|EFY66623.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675065|gb|EFY71148.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681602|gb|EFY77631.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685946|gb|EFY81935.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716407|gb|EFZ07978.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323131774|gb|ADX19204.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|323195816|gb|EFZ80989.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196428|gb|EFZ81579.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202333|gb|EFZ87378.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211246|gb|EFZ96091.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216045|gb|EGA00776.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223464|gb|EGA07792.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226806|gb|EGA10996.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231832|gb|EGA15942.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233215|gb|EGA17310.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237282|gb|EGA21347.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245517|gb|EGA29516.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249023|gb|EGA32945.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250646|gb|EGA34527.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256875|gb|EGA40589.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263024|gb|EGA46571.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266024|gb|EGA49519.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272781|gb|EGA56184.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625160|gb|EGE31505.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326630105|gb|EGE36448.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332990268|gb|AEF09251.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|339514317|emb|CCC32080.1| 30S ribosomal subunit protein S4 [Salmonella bongori NCTC 12419]
gi|353074191|gb|EHB39952.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353625877|gb|EHC74554.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|363549385|gb|EHL33739.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363559183|gb|EHL43358.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363559889|gb|EHL44038.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363562429|gb|EHL46527.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363564740|gb|EHL48782.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363575869|gb|EHL59715.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363579123|gb|EHL62917.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366059730|gb|EHN23998.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366064225|gb|EHN28426.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366068330|gb|EHN32474.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366072621|gb|EHN36710.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366073059|gb|EHN37137.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366077157|gb|EHN41177.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366077214|gb|EHN41233.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366830152|gb|EHN57025.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372206668|gb|EHP20171.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|379987471|emb|CCF86484.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|381293050|gb|EIC34222.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381295646|gb|EIC36755.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381298410|gb|EIC39489.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381307334|gb|EIC48192.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|381311760|gb|EIC52570.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|392613602|gb|EIW96057.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392618652|gb|EIX01047.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392732709|gb|EIZ89916.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392741492|gb|EIZ98592.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392743794|gb|EJA00860.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744710|gb|EJA01754.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392751587|gb|EJA08535.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392754514|gb|EJA11430.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392759548|gb|EJA16399.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392761203|gb|EJA18032.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392767399|gb|EJA24168.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392778595|gb|EJA35267.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392780467|gb|EJA37119.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392781777|gb|EJA38415.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392784642|gb|EJA41230.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392785453|gb|EJA42029.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392797452|gb|EJA53759.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392801221|gb|EJA57450.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392804878|gb|EJA61017.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392808061|gb|EJA64116.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392809841|gb|EJA65870.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392817415|gb|EJA73329.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392823752|gb|EJA79546.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392825292|gb|EJA81044.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392827287|gb|EJA82997.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392830197|gb|EJA85853.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|395980549|gb|EJH89773.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395993179|gb|EJI02279.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395993255|gb|EJI02351.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395994054|gb|EJI03136.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395995954|gb|EJI05011.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396007720|gb|EJI16664.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396009577|gb|EJI18502.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396020052|gb|EJI28901.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396020090|gb|EJI28938.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396024162|gb|EJI32950.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396028920|gb|EJI37672.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396029001|gb|EJI37751.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396038541|gb|EJI47177.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396043178|gb|EJI51791.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396047991|gb|EJI56557.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396049531|gb|EJI58070.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396050084|gb|EJI58617.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396050761|gb|EJI59282.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396063466|gb|EJI71858.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396065091|gb|EJI73470.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396067907|gb|EJI76260.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402519323|gb|EJW26685.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402522507|gb|EJW29831.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402522867|gb|EJW30186.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402528778|gb|EJW36027.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414013926|gb|EKS97788.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414015189|gb|EKS99015.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414015500|gb|EKS99314.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414028666|gb|EKT11843.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414030044|gb|EKT13186.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414032170|gb|EKT15182.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414043529|gb|EKT26028.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414043747|gb|EKT26231.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414048742|gb|EKT30977.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414056591|gb|EKT38403.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414063077|gb|EKT44276.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|434939896|gb|ELL46632.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434955816|gb|ELL49615.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|434961533|gb|ELL54814.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965779|gb|ELL58697.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434976574|gb|ELL68798.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977783|gb|ELL69875.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434978415|gb|ELL70449.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434990724|gb|ELL82261.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993772|gb|ELL85170.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434997016|gb|ELL88298.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435000445|gb|ELL91592.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435001198|gb|ELL92318.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006525|gb|ELL97413.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435018789|gb|ELM09246.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435021402|gb|ELM11776.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435025063|gb|ELM15244.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435030718|gb|ELM20725.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435032904|gb|ELM22822.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435044624|gb|ELM34300.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435047411|gb|ELM36999.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435047472|gb|ELM37054.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435049691|gb|ELM39207.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435053020|gb|ELM42493.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435064351|gb|ELM53484.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435064687|gb|ELM53808.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435071960|gb|ELM60894.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435076262|gb|ELM65048.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435077214|gb|ELM65972.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435080601|gb|ELM69277.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435089826|gb|ELM78240.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435098976|gb|ELM87200.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435103554|gb|ELM91634.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435103606|gb|ELM91683.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435104131|gb|ELM92202.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435108137|gb|ELM96105.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435123128|gb|ELN10625.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435124372|gb|ELN11831.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435125880|gb|ELN13307.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435133286|gb|ELN20454.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435133897|gb|ELN21043.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435137324|gb|ELN24390.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435147270|gb|ELN34043.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435151126|gb|ELN37780.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435154754|gb|ELN41318.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435160579|gb|ELN46848.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435166953|gb|ELN52900.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435170781|gb|ELN56512.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435173472|gb|ELN58981.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435182293|gb|ELN67319.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435187400|gb|ELN72167.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435192137|gb|ELN76688.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435193192|gb|ELN77674.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435201737|gb|ELN85622.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435203307|gb|ELN87068.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435206284|gb|ELN89825.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435211431|gb|ELN94545.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435219635|gb|ELO01980.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435226183|gb|ELO07768.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435226738|gb|ELO08294.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435234469|gb|ELO15326.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435238485|gb|ELO19118.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435238522|gb|ELO19154.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435245942|gb|ELO25969.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435259387|gb|ELO38612.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435261347|gb|ELO40503.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435263570|gb|ELO42615.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435265422|gb|ELO44275.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435266846|gb|ELO45574.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435273488|gb|ELO51755.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435280671|gb|ELO58366.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435284145|gb|ELO61648.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435284892|gb|ELO62310.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435303492|gb|ELO79366.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435306481|gb|ELO81771.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435308501|gb|ELO83445.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435314660|gb|ELO88054.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435314705|gb|ELO88096.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435321892|gb|ELO94240.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435329252|gb|ELP00698.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336565|gb|ELP06452.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|436419216|gb|ELP17095.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436419723|gb|ELP17597.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436423651|gb|ELP21458.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|444845841|gb|ELX71025.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444846727|gb|ELX71883.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444848958|gb|ELX74076.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444859286|gb|ELX84237.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444861833|gb|ELX86704.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871874|gb|ELX96264.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444873953|gb|ELX98223.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876045|gb|ELY00234.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444879386|gb|ELY03488.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|444883303|gb|ELY07195.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|451911775|gb|AGF83581.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 206
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K +P RS+ + DIN+ L
Sbjct: 180 GTYKRKPERSDLSADINEHL 199
>gi|410610654|ref|ZP_11321768.1| small subunit ribosomal protein S4 [Glaciecola psychrophila 170]
gi|410169790|dbj|GAC35657.1| small subunit ribosomal protein S4 [Glaciecola psychrophila 170]
Length = 206
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYR+GF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRIGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D++SVREKAKKQ RI +LEL++ +WI VD KKME
Sbjct: 120 HKAILVNGKVVNVPSFNVSADDVVSVREKAKKQARIVAALELADQREKPTWIEVDNKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + DIN+ L
Sbjct: 180 GTFKRVPERTDLSADINEQL 199
>gi|283788068|ref|YP_003367933.1| 30S ribosomal protein S4 [Citrobacter rodentium ICC168]
gi|282951522|emb|CBG91221.1| 30S ribosomal subunit protein S4 [Citrobacter rodentium ICC168]
Length = 206
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K +P RS+ + DIN+ L
Sbjct: 180 GTYKRKPERSDLSADINEHL 199
>gi|85713166|ref|ZP_01044198.1| 30S ribosomal protein S4 [Idiomarina baltica OS145]
gi|85693036|gb|EAQ31002.1| 30S ribosomal protein S4 [Idiomarina baltica OS145]
Length = 206
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIETAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARIKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+ ++P D++SVREKAKKQ RI+ +LELSE W+ VD+ KME
Sbjct: 120 HKAVVVNGQVVNIPSFMVRPEDVVSVREKAKKQARISAALELSEQREKPVWLEVDSSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GQFKRLPERSDLSAEINEQL 199
>gi|317049816|ref|YP_004117464.1| 30S ribosomal protein S4 [Pantoea sp. At-9b]
gi|316951433|gb|ADU70908.1| ribosomal protein S4 [Pantoea sp. At-9b]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSILVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|251787995|ref|YP_003002716.1| 30S ribosomal protein S4 [Dickeya zeae Ech1591]
gi|247536616|gb|ACT05237.1| ribosomal protein S4 [Dickeya zeae Ech1591]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|332142182|ref|YP_004427920.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Deep
ecotype']
gi|406598278|ref|YP_006749408.1| 30S ribosomal protein S4 [Alteromonas macleodii ATCC 27126]
gi|407685267|ref|YP_006800441.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'English
Channel 673']
gi|407689204|ref|YP_006804377.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|407701506|ref|YP_006826293.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Black Sea
11']
gi|410863178|ref|YP_006978412.1| 30S ribosomal protein S4 [Alteromonas macleodii AltDE1]
gi|226697796|sp|B4RT52.1|RS4_ALTMD RecName: Full=30S ribosomal protein S4
gi|327552204|gb|AEA98922.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Deep
ecotype']
gi|406375599|gb|AFS38854.1| 30S ribosomal protein S4 [Alteromonas macleodii ATCC 27126]
gi|407246878|gb|AFT76064.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'English
Channel 673']
gi|407250653|gb|AFT79838.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Black Sea
11']
gi|407292584|gb|AFT96896.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|410820440|gb|AFV87057.1| 30S ribosomal protein S4 [Alteromonas macleodii AltDE1]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+ + D++SVREKAKKQ RI +LEL++ +WI VD+ KME
Sbjct: 120 HKAIMVNGQVVNIPSFNVSAEDVVSVREKAKKQARIVAALELADQREKPTWIEVDSSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + +IN+ L
Sbjct: 180 GTFKRVPERTDLSAEINEQL 199
>gi|284006139|emb|CBA71381.1| 30S ribosomal protein S4 [Arsenophonus nasoniae]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TGE +L LLE R DN VYRMGF +TR+EARQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEATRLKGNTGENLLNLLEGRLDNTVYRMGFGATRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D+ISVREKAKKQ+RI +LEL+E SW+ VDA KME
Sbjct: 120 HKAIMVNGQVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPSWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERADLSADINEHL 199
>gi|410617409|ref|ZP_11328377.1| small subunit ribosomal protein S4 [Glaciecola polaris LMG 21857]
gi|410162972|dbj|GAC32515.1| small subunit ribosomal protein S4 [Glaciecola polaris LMG 21857]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNPPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYR+GF+STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRIGFASTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VN+ S+ + D++SVREKAKKQ RI ++LEL+E +WI VD+KKME
Sbjct: 120 HKAILVNGQVVNVPSFNVSADDVVSVREKAKKQARIVSALELAEQREKPTWIEVDSKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + +IN+ L
Sbjct: 180 GTFKRVPERTDLSAEINEQL 199
>gi|304399266|ref|ZP_07381132.1| ribosomal protein S4 [Pantoea sp. aB]
gi|308188332|ref|YP_003932463.1| 30S ribosomal protein S4 [Pantoea vagans C9-1]
gi|372275665|ref|ZP_09511701.1| 30S ribosomal protein S4 [Pantoea sp. SL1_M5]
gi|381403023|ref|ZP_09927707.1| 30S ribosomal protein S4 [Pantoea sp. Sc1]
gi|390436433|ref|ZP_10224971.1| 30S ribosomal protein S4 [Pantoea agglomerans IG1]
gi|304353192|gb|EFM17573.1| ribosomal protein S4 [Pantoea sp. aB]
gi|308058842|gb|ADO11014.1| 30S ribosomal protein S4 [Pantoea vagans C9-1]
gi|380736222|gb|EIB97285.1| 30S ribosomal protein S4 [Pantoea sp. Sc1]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|392544140|ref|ZP_10291277.1| 30S ribosomal protein S4 [Pseudoalteromonas piscicida JCM 20779]
gi|409202231|ref|ZP_11230434.1| 30S ribosomal protein S4 [Pseudoalteromonas flavipulchra JG1]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+ + P D++ +REK+KKQ RI +LEL+E +WI VD KKME
Sbjct: 120 HKAVMVNGRVVNIPSFVVTPEDVVVIREKSKKQARIIAALELAEQREKPTWIEVDGKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|293393288|ref|ZP_06637602.1| 30S ribosomal protein S4 [Serratia odorifera DSM 4582]
gi|291424198|gb|EFE97413.1| 30S ribosomal protein S4 [Serratia odorifera DSM 4582]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKGIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|308048015|ref|YP_003911581.1| 30S ribosomal protein S4 [Ferrimonas balearica DSM 9799]
gi|307630205|gb|ADN74507.1| SSU ribosomal protein S4P [Ferrimonas balearica DSM 9799]
Length = 206
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTVPGQHG-ARRARLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLESR DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLESRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+ + P D+I+VREKA+KQ RI +LE++E +W+ VD KME
Sbjct: 120 HKAIKVNGRVVNIPSFSVSPNDVIAVREKAQKQARIKGALEVAEQREKPTWVEVDGAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|336315937|ref|ZP_08570842.1| ribosomal protein S4, bacterial/organelle type [Rheinheimera sp.
A13L]
gi|335879783|gb|EGM77677.1| ribosomal protein S4, bacterial/organelle type [Rheinheimera sp.
A13L]
Length = 206
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKC L PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCNLTTAPGQHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMG +STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGLASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A ++N +VNI SY + P +I+VREKAKKQ RI +LE+SE +WI VD KKME
Sbjct: 120 HKAIMINGAVVNIPSYAVSPDQVIAVREKAKKQARIVAALEISEQREKPTWIEVDTKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEQL 199
>gi|89093591|ref|ZP_01166539.1| 30S ribosomal protein S4 [Neptuniibacter caesariensis]
gi|89082281|gb|EAR61505.1| 30S ribosomal protein S4 [Oceanospirillum sp. MED92]
Length = 206
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+LDSKCK + PG HG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVRALDSKCKAETVPGVHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E AR G TGE +L+LLE R DNVVYRMGF STR+EARQ++S
Sbjct: 60 KVRRMYGVLERQFRSYYKEAARRSGATGENLLQLLEGRLDNVVYRMGFGSTRAEARQIVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR+ VN ++VNIASY++K GD+++VREKAK Q RI N+LEL+ W+ VDA KME
Sbjct: 120 HRSITVNGQVVNIASYQVKAGDVVAVREKAKTQLRIKNALELAGQRAAVEWVEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K+ P RS+ + DIN+ L
Sbjct: 180 GTYKATPERSDLSADINEQL 199
>gi|27364191|ref|NP_759719.1| 30S ribosomal protein S4 [Vibrio vulnificus CMCP6]
gi|37678582|ref|NP_933191.1| 30S ribosomal protein S4 [Vibrio vulnificus YJ016]
gi|320157577|ref|YP_004189956.1| 30S ribosomal protein S4p [Vibrio vulnificus MO6-24/O]
gi|31340392|sp|Q8DE62.1|RS4_VIBVU RecName: Full=30S ribosomal protein S4
gi|41017818|sp|Q7MPG5.1|RS4_VIBVY RecName: Full=30S ribosomal protein S4
gi|27360309|gb|AAO09246.1| ribosomal protein S4 [Vibrio vulnificus CMCP6]
gi|37197322|dbj|BAC93162.1| ribosomal protein S4 [Vibrio vulnificus YJ016]
gi|319932889|gb|ADV87753.1| SSU ribosomal protein S4p (S9e) [Vibrio vulnificus MO6-24/O]
Length = 206
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYAEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK+QTRI +LE++E +WI VDA KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQTRIKAALEVAEQREKPTWIEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|333895230|ref|YP_004469105.1| 30S ribosomal protein S4 [Alteromonas sp. SN2]
gi|332995248|gb|AEF05303.1| 30S ribosomal protein S4 [Alteromonas sp. SN2]
Length = 206
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEKRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+ + D++SVREKAKKQ RI +LEL++ +WI VD+ KME
Sbjct: 120 HKAIMVNGQVVNIPSFNVSAEDVVSVREKAKKQARIVAALELADQREKPTWIEVDSTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + +IN+ L
Sbjct: 180 GTFKRLPERTDLSAEINEQL 199
>gi|334125901|ref|ZP_08499885.1| 30S ribosomal protein S4 [Enterobacter hormaechei ATCC 49162]
gi|345301145|ref|YP_004830503.1| 30S ribosomal protein S4 [Enterobacter asburiae LF7a]
gi|392980972|ref|YP_006479560.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. dissolvens
SDM]
gi|394895581|ref|YP_003615150.2| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|401765485|ref|YP_006580492.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|419960309|ref|ZP_14476351.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae GS1]
gi|333386301|gb|EGK57518.1| 30S ribosomal protein S4 [Enterobacter hormaechei ATCC 49162]
gi|345095082|gb|AEN66718.1| ribosomal protein S4 [Enterobacter asburiae LF7a]
gi|388604801|gb|EIM34029.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae GS1]
gi|392326905|gb|AFM61858.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. dissolvens
SDM]
gi|400177019|gb|AFP71868.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 206
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRQPERSDLSADINEHL 199
>gi|398792553|ref|ZP_10553147.1| ribosomal protein S4, bacterial/organelle type [Pantoea sp. YR343]
gi|398800917|ref|ZP_10560177.1| ribosomal protein S4, bacterial/organelle type [Pantoea sp. GM01]
gi|398093734|gb|EJL84109.1| ribosomal protein S4, bacterial/organelle type [Pantoea sp. GM01]
gi|398212931|gb|EJM99532.1| ribosomal protein S4, bacterial/organelle type [Pantoea sp. YR343]
Length = 206
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN ++VNIASY++ P D++S+REKAK+Q+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSILVNGRVVNIASYQVSPNDVVSIREKAKQQSRVKAALELAEQREKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|303256474|ref|ZP_07342488.1| ribosomal protein S4 [Burkholderiales bacterium 1_1_47]
gi|331000668|ref|ZP_08324321.1| ribosomal protein S4 [Parasutterella excrementihominis YIT 11859]
gi|302859965|gb|EFL83042.1| ribosomal protein S4 [Burkholderiales bacterium 1_1_47]
gi|329570880|gb|EGG52591.1| ribosomal protein S4 [Parasutterella excrementihominis YIT 11859]
Length = 207
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 150/200 (75%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DL LKSA RS DSKCK + PGQHGR SG+R SDYG Q REKQ
Sbjct: 1 MARYTGPKEKLARREGCDLNLKSAVRSFDSKCKSESAPGQHGRTSGARLSDYGAQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFR YF + AR +G TGE +L LLESR DNVVYRMGF TR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRLYFAKAARKRGNTGEQLLSLLESRLDNVVYRMGFGCTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A VN VNI SY +K GD+I+VREKAK Q RIA SL+L+E + W++VD KK+E
Sbjct: 121 HCAISVNGNKVNIPSYSVKAGDVIAVREKAKNQVRIAESLKLAESNGLPDWVSVDTKKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R E D+N+ L
Sbjct: 181 GTFKNVPARDEICPDVNESL 200
>gi|311277749|ref|YP_003939980.1| 30S ribosomal protein S4 [Enterobacter cloacae SCF1]
gi|308746944|gb|ADO46696.1| ribosomal protein S4 [Enterobacter cloacae SCF1]
Length = 206
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++SVREKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRQPERSDLSADINEHL 199
>gi|377579911|ref|ZP_09808869.1| 30S ribosomal protein S4 [Escherichia hermannii NBRC 105704]
gi|377538778|dbj|GAB54034.1| 30S ribosomal protein S4 [Escherichia hermannii NBRC 105704]
Length = 206
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VD KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>gi|329298510|ref|ZP_08255846.1| 30S ribosomal protein S4 [Plautia stali symbiont]
Length = 206
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|423110650|ref|ZP_17098345.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5243]
gi|423116648|ref|ZP_17104339.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5245]
gi|376377616|gb|EHS90384.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5245]
gi|376378714|gb|EHS91472.1| 30S ribosomal protein S4 [Klebsiella oxytoca 10-5243]
Length = 206
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGENLLTLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|300721390|ref|YP_003710661.1| 30S ribosomal protein S4 [Xenorhabdus nematophila ATCC 19061]
gi|297627878|emb|CBJ88424.1| 30S ribosomal subunit protein S4 [Xenorhabdus nematophila ATCC
19061]
Length = 206
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TGE +L LLESR DNVVYRMGF +TR+E+RQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEATRLKGNTGENLLNLLESRLDNVVYRMGFGATRAESRQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNIASY++ P D++SVREKAKKQ RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAITVNGRVVNIASYQVSPNDVVSVREKAKKQARIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|16762867|ref|NP_458484.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144354|ref|NP_807696.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213027591|ref|ZP_03342038.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213052884|ref|ZP_03345762.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213425775|ref|ZP_03358525.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213580697|ref|ZP_03362523.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213612395|ref|ZP_03370221.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647330|ref|ZP_03377383.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824201|ref|ZP_06543796.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25009212|sp|Q8Z1X4.1|RS4_SALTI RecName: Full=30S ribosomal protein S4
gi|25294504|pir||AI1008 30S ribosomal chain protein S4 [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16505174|emb|CAD09170.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139992|gb|AAO71556.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 206
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K +P RS+ + DIN+ L
Sbjct: 180 GTYKRKPERSDLSADINEHL 199
>gi|197287092|ref|YP_002152964.1| 30S ribosomal protein S4 [Proteus mirabilis HI4320]
gi|227354912|ref|ZP_03839326.1| 30S ribosomal protein S4 [Proteus mirabilis ATCC 29906]
gi|425070321|ref|ZP_18473435.1| 30S ribosomal protein S4 [Proteus mirabilis WGLW6]
gi|425070633|ref|ZP_18473739.1| 30S ribosomal protein S4 [Proteus mirabilis WGLW4]
gi|226699106|sp|B4F1K8.1|RS4_PROMH RecName: Full=30S ribosomal protein S4
gi|194684579|emb|CAR46428.1| 30S ribosomal protein S4 [Proteus mirabilis HI4320]
gi|227164994|gb|EEI49833.1| 30S ribosomal protein S4 [Proteus mirabilis ATCC 29906]
gi|404595453|gb|EKA95997.1| 30S ribosomal protein S4 [Proteus mirabilis WGLW6]
gi|404600155|gb|EKB00603.1| 30S ribosomal protein S4 [Proteus mirabilis WGLW4]
Length = 206
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+EARQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++SVREK+KKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|410634575|ref|ZP_11345209.1| small subunit ribosomal protein S4 [Glaciecola arctica BSs20135]
gi|410145779|dbj|GAC22076.1| small subunit ribosomal protein S4 [Glaciecola arctica BSs20135]
Length = 206
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYR+GF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRIGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D++SVREKAKKQ RI +LEL++ WI VD KKME
Sbjct: 120 HKAILVNGKVVNVPSFNVTADDVVSVREKAKKQARIVAALELADQREKPVWIEVDNKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + DIN+ L
Sbjct: 180 GTFKRVPERTDLSADINEQL 199
>gi|54778757|gb|AAV39591.1| ribosomal protein S4 [synthetic construct]
Length = 233
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 156/199 (78%), Gaps = 1/199 (0%)
Query: 2 ARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQK 61
ARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQK
Sbjct: 26 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQK 84
Query: 62 VKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISH 121
V+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH
Sbjct: 85 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 144
Query: 122 RAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEG 181
+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG
Sbjct: 145 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 204
Query: 182 VFKSEPNRSEFANDINDLL 200
FK +P RS+ + DIN+ L
Sbjct: 205 TFKRKPERSDLSADINEHL 223
>gi|33357881|pdb|1P6G|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
gi|33357958|pdb|1P87|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
gi|83754042|pdb|2AVY|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|83754098|pdb|2AW7|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
gi|118138056|pdb|2I2P|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|118138127|pdb|2I2U|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
gi|157836026|pdb|2QOU|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
gi|157836077|pdb|2QOW|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|157836130|pdb|2QOY|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
gi|157836181|pdb|2QP0|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
gi|158429701|pdb|2QAL|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
gi|158429753|pdb|2QAN|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
gi|158429811|pdb|2QB9|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
gi|158429863|pdb|2QBB|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
gi|158429915|pdb|2QBD|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
gi|158429967|pdb|2QBF|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
gi|158430021|pdb|2QBH|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|158430074|pdb|2QBJ|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|158431374|pdb|2Z4K|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|158431427|pdb|2Z4M|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
gi|168988791|pdb|2VHO|D Chain D, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
gi|168988812|pdb|2VHP|D Chain D, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
gi|197107281|pdb|3DF1|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
gi|197107333|pdb|3DF3|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
gi|224510725|pdb|3FIH|D Chain D, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
gi|294662220|pdb|2WWL|D Chain D, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
gi|308387968|pdb|3OFO|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
gi|308387989|pdb|3OFP|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
gi|309320026|pdb|3OFA|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
gi|309320047|pdb|3OFB|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
gi|309320130|pdb|3OFX|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
gi|309320151|pdb|3OFY|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
gi|315113615|pdb|3OAQ|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
gi|315113636|pdb|3OAR|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
gi|329665995|pdb|3J00|D Chain D, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
gi|344189497|pdb|2YKR|D Chain D, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
gi|355333228|pdb|4A2I|D Chain D, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
gi|375332715|pdb|4ADV|D Chain D, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
gi|380763742|pdb|3J0U|G Chain G, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
gi|380763766|pdb|3J0V|G Chain G, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
gi|380763824|pdb|3J0X|G Chain G, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
gi|380763882|pdb|3J0Z|G Chain G, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
gi|380763906|pdb|3J10|G Chain G, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
gi|380763997|pdb|3J13|F Chain F, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
gi|386783099|pdb|3J18|D Chain D, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
gi|409973952|pdb|4GD1|D Chain D, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
gi|409973976|pdb|4GD2|D Chain D, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 205
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 156/199 (78%), Gaps = 1/199 (0%)
Query: 2 ARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQK 61
ARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQK
Sbjct: 1 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQK 59
Query: 62 VKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISH 121
V+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH
Sbjct: 60 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 119
Query: 122 RAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEG 181
+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG
Sbjct: 120 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 179
Query: 182 VFKSEPNRSEFANDINDLL 200
FK +P RS+ + DIN+ L
Sbjct: 180 TFKRKPERSDLSADINEHL 198
>gi|387887653|ref|YP_006317951.1| 30S ribosomal protein S4 [Escherichia blattae DSM 4481]
gi|414595873|ref|ZP_11445480.1| 30S ribosomal protein S4 [Escherichia blattae NBRC 105725]
gi|386922486|gb|AFJ45440.1| 30S ribosomal subunit protein S4 [Escherichia blattae DSM 4481]
gi|403193161|dbj|GAB83132.1| 30S ribosomal protein S4 [Escherichia blattae NBRC 105725]
Length = 206
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>gi|307132815|ref|YP_003884831.1| 30S ribosomal protein S4 [Dickeya dadantii 3937]
gi|306530344|gb|ADN00275.1| 30S ribosomal subunit protein S4 [Dickeya dadantii 3937]
Length = 206
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|384081769|ref|ZP_09992944.1| 30S ribosomal protein S4 [gamma proteobacterium HIMB30]
Length = 206
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DLFLKS RS+DSKC L+ +PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLARREGTDLFLKSGVRSMDSKCNLETKPGMHGAARG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E +RL+G TGE +LKLLE R DNVVYRMGF STR+EARQ++S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEASRLRGSTGENLLKLLECRLDNVVYRMGFGSTRAEARQIVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR+ +VN K++NI SY+++PGD+ISVREKAK Q R+ +LEL+ W+ VD+ KME
Sbjct: 120 HRSIMVNGKVLNIPSYQVRPGDVISVREKAKGQLRVRAALELAGQRADVPWVDVDSSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R + + DIN+ L
Sbjct: 180 GTFKTLPERQDLSQDINENL 199
>gi|152980446|ref|YP_001355075.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp.
Marseille]
gi|166229272|sp|A6T3H8.1|RPOA_JANMA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|151280523|gb|ABR88933.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp.
Marseille]
Length = 325
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 157/306 (51%), Positives = 185/306 (60%), Gaps = 76/306 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRII+V+ LG+ HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDII-----------------DIILNLK----GVIL----------KLYN 285
HEYSSL+GVQED++ D+ L LK G +L +L N
Sbjct: 63 HEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKDGEGAVLASDIELPHDVELVN 122
Query: 286 RDYAILNLKKFGKC---------------------------------------------V 300
D+ I +L GK
Sbjct: 123 PDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVSYA 182
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V ++ +E +D++ + N + EEAIRQSARVLVDQLNVFAALE T + S
Sbjct: 183 VESARVEQRTDLDKLVINIETNGVISPEEAIRQSARVLVDQLNVFAALEGTEAPADAPSR 242
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE
Sbjct: 243 APAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEIKE 302
Query: 421 ILASRG 426
+LASRG
Sbjct: 303 VLASRG 308
>gi|242237883|ref|YP_002986064.1| 30S ribosomal protein S4 [Dickeya dadantii Ech703]
gi|242129940|gb|ACS84242.1| ribosomal protein S4 [Dickeya dadantii Ech703]
Length = 206
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+EARQL+
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLVG 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|261378065|ref|ZP_05982638.1| ribosomal protein S4 [Neisseria cinerea ATCC 14685]
gi|269145515|gb|EEZ71933.1| ribosomal protein S4 [Neisseria cinerea ATCC 14685]
Length = 206
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGG-KKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEAERRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD++S+REKAKKQ RI +L L+ W+ VDA K+E
Sbjct: 120 HKAIAVNGQVVNIPSFQVKVGDVVSIREKAKKQVRIQEALSLATQVGLPGWVAVDANKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+R+E DIN+ L
Sbjct: 180 GVFKNMPDRAELTGDINEQL 199
>gi|26399364|sp|P59132.1|RS4_SHIFL RecName: Full=30S ribosomal protein S4
Length = 206
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +V ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVPGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>gi|134096296|ref|YP_001101371.1| DNA-directed RNA polymerase subunit alpha [Herminiimonas
arsenicoxydans]
gi|158513574|sp|A4G9R3.1|RPOA_HERAR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|133740199|emb|CAL63250.1| RNA polymerase, alpha subunit [Herminiimonas arsenicoxydans]
Length = 325
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 157/306 (51%), Positives = 185/306 (60%), Gaps = 76/306 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRII+V+ LG+ HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDII-----------------DIILNLK----GVIL----------KLYN 285
HEYSSL+GVQED++ D+ L LK G +L +L N
Sbjct: 63 HEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKEGEGAVLASDIELPHDVELVN 122
Query: 286 RDYAILNLKKFGKC---------------------------------------------V 300
D+ I +L GK
Sbjct: 123 PDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVSYA 182
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V ++ +E +D++ + N + EEAIRQSARVLVDQLNVFAALE T + S
Sbjct: 183 VESARVEQRTDLDKLVINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEAPADAPSR 242
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE
Sbjct: 243 APAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEIKE 302
Query: 421 ILASRG 426
+LASRG
Sbjct: 303 VLASRG 308
>gi|422017018|ref|ZP_16363591.1| 30S ribosomal protein S4 [Providencia burhodogranariea DSM 19968]
gi|414091187|gb|EKT52878.1| 30S ribosomal protein S4 [Providencia burhodogranariea DSM 19968]
Length = 206
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R++G+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+EARQ++S
Sbjct: 60 KVRRIFGVLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN +VNIASY++ P D+ISVREKAKKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGHVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|359446511|ref|ZP_09236177.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20439]
gi|358039611|dbj|GAA72426.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20439]
Length = 206
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI SY I P D + +REK+K Q RI +LEL+E +W+ VD KK+E
Sbjct: 120 HKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDGKKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RSE + DIN+ L
Sbjct: 180 GSFKRLPERSELSADINEQL 199
>gi|336450115|ref|ZP_08620571.1| ribosomal protein S4, bacterial/organelle type [Idiomarina sp.
A28L]
gi|336282933|gb|EGN76143.1| ribosomal protein S4, bacterial/organelle type [Idiomarina sp.
A28L]
Length = 206
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLENAPGQHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R++GILEKQFR Y+ E ARLKG TGE +L+LLE+R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIFGILEKQFRNYYKEAARLKGNTGENLLQLLEARLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++KP D++S+REKAKKQ RI +LEL+E W+ VDAK+++
Sbjct: 120 HKAIVVNGRVVNIPSFQVKPEDVVSIREKAKKQARIGAALELAEQREKPLWVEVDAKELQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + +IN+ L
Sbjct: 180 GTFKRLPERTDLSAEINEQL 199
>gi|329893623|ref|ZP_08269757.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC3088]
gi|328923550|gb|EGG30862.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC3088]
Length = 206
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKCKL+ PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGARALESKCKLETAPGMHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILEKQFR Y+ E AR KG TGE +L+LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGILEKQFRGYYKEAARRKGATGENLLQLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN +VN+ SY+++PGD+++VREKAKKQ RI +++ L+ WI V+ K+E
Sbjct: 120 HKGVLVNGSVVNVPSYQVQPGDVVAVREKAKKQLRIQSAVALAGQRADIEWIDVNTDKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P R+E ++IN+ L
Sbjct: 180 GVFKARPERAELTSEINENL 199
>gi|354595941|ref|ZP_09013958.1| ribosomal protein S4 [Brenneria sp. EniD312]
gi|353673876|gb|EHD19909.1| ribosomal protein S4 [Brenneria sp. EniD312]
Length = 206
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++V+IASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVSIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|88704352|ref|ZP_01102066.1| 30S ribosomal protein S4 [Congregibacter litoralis KT71]
gi|88701403|gb|EAQ98508.1| 30S ribosomal protein S4 [Congregibacter litoralis KT71]
Length = 206
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS RSL+SKCK + PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRSLESKCKPESVPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLESR DNVVYR+GF STRSEARQL++
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRIGFGSTRSEARQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNIASYK+K GD++S+REKAKKQ R+ +++ L+ WI V+ +K+E
Sbjct: 120 HKAILVNGKVVNIASYKVKAGDVVSLREKAKKQLRVQSAMALAAQRGEPEWIDVNVEKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
V+K+ P+R E ++IN+ L
Sbjct: 180 AVYKAAPDRQELTSEINENL 199
>gi|404379472|ref|ZP_10984529.1| 30S ribosomal protein S4 [Simonsiella muelleri ATCC 29453]
gi|294482959|gb|EFG30647.1| 30S ribosomal protein S4 [Simonsiella muelleri ATCC 29453]
Length = 206
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 161/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL+LKSARRSL+SKCK++ PGQHG SR SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLARREGTDLYLKSARRSLESKCKMESAPGQHG-AKKSRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW++VDA KME
Sbjct: 120 HKALTVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAAQIGMPSWVSVDANKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+R+E +DIN+ L
Sbjct: 180 GTFKNVPDRAELYSDINEQL 199
>gi|119502947|ref|ZP_01625032.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2080]
gi|119461293|gb|EAW42383.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2080]
Length = 206
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DL LKS RSLDSKCK + PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVRSLDSKCKAETAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLESR DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN +VNI SY+++PGDI+SVREKAKKQ RI ++ ++E WI V+++K+E
Sbjct: 120 HKGILVNGTVVNIPSYQVRPGDIVSVREKAKKQLRIQAAMSIAEQRGEQVWIEVNSEKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS+P R + ++IN+ L
Sbjct: 180 GTFKSKPERQDLPSEINENL 199
>gi|392549255|ref|ZP_10296392.1| 30S ribosomal protein S4 [Pseudoalteromonas rubra ATCC 29570]
Length = 206
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+ + P D++ +REK+KKQ RI +LEL+E +W+ VD KME
Sbjct: 120 HKAIMVNGRVVNIPSFVVTPEDVVVIREKSKKQARIIAALELAEQREKPTWVEVDGSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|378580940|ref|ZP_09829592.1| 30S ribosomal subunit protein S4 [Pantoea stewartii subsp.
stewartii DC283]
gi|377816419|gb|EHT99522.1| 30S ribosomal subunit protein S4 [Pantoea stewartii subsp.
stewartii DC283]
Length = 206
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|338999005|ref|ZP_08637660.1| SSU ribosomal protein S4P [Halomonas sp. TD01]
gi|338764026|gb|EGP19003.1| SSU ribosomal protein S4P [Halomonas sp. TD01]
Length = 206
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS + KCK + PG HG+ R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE++L+LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGATGEVLLQLLESRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ASY++KPGD++SVREKAK Q RI +SL ++ + +WI +DAKKME
Sbjct: 120 HKAISVNGRTVNVASYQVKPGDVVSVREKAKNQARIQHSLTIAANRGDIAWIEIDAKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R + DIN+ L
Sbjct: 180 GTFKALPERGDLTADINENL 199
>gi|407792388|ref|ZP_11139449.1| 30S ribosomal protein S4 [Gallaecimonas xiamenensis 3-C-1]
gi|407197253|gb|EKE67323.1| 30S ribosomal protein S4 [Gallaecimonas xiamenensis 3-C-1]
Length = 206
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE+R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNIAS++I D++S+REKAKKQ R+ +LEL+E +W+ VD KME
Sbjct: 120 HKAILVNGKVVNIASFQISVNDVVSIREKAKKQARVKAALELAEQREKPTWLEVDKDKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + DIN+ L
Sbjct: 180 GSFKRLPERTDLSADINEQL 199
>gi|50122927|ref|YP_052094.1| 30S ribosomal protein S4 [Pectobacterium atrosepticum SCRI1043]
gi|227115248|ref|ZP_03828904.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328925|ref|ZP_03832949.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|253690159|ref|YP_003019349.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|403060225|ref|YP_006648442.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|61215522|sp|Q6CZZ4.1|RS4_ERWCT RecName: Full=30S ribosomal protein S4
gi|259495287|sp|C6DFS4.1|RS4_PECCP RecName: Full=30S ribosomal protein S4
gi|49613453|emb|CAG76904.1| 30S ribosomal subunit protein S4 [Pectobacterium atrosepticum
SCRI1043]
gi|251756737|gb|ACT14813.1| ribosomal protein S4 [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|402807551|gb|AFR05189.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 206
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+EARQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++V+IASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVSIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|146313361|ref|YP_001178435.1| 30S ribosomal protein S4 [Enterobacter sp. 638]
gi|172046002|sp|A4WFA4.1|RS4_ENT38 RecName: Full=30S ribosomal protein S4
gi|145320237|gb|ABP62384.1| SSU ribosomal protein S4P [Enterobacter sp. 638]
Length = 206
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRTYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++K D++ +REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVKANDVVCIREKAKKQSRVKAALELAEQREKPTWLEVDASKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRQPERSDLSADINEHL 199
>gi|88861470|ref|ZP_01136096.1| 30S ribosomal protein S4 [Pseudoalteromonas tunicata D2]
gi|88816518|gb|EAR26347.1| 30S ribosomal protein S4 [Pseudoalteromonas tunicata D2]
Length = 206
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR+KG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARIKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +VNI SY+I D++ +REKAKKQ RI +LEL+E +W+ VD KME
Sbjct: 120 HKSVMVNGSVVNIPSYRITADDVVVIREKAKKQARIVAALELAEQREKPTWVEVDGSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRLPERSDLSADINEQL 199
>gi|259909976|ref|YP_002650332.1| 30S ribosomal protein S4 [Erwinia pyrifoliae Ep1/96]
gi|292489825|ref|YP_003532715.1| 30S ribosomal protein S4 [Erwinia amylovora CFBP1430]
gi|292900867|ref|YP_003540236.1| 30S ribosomal protein S4 [Erwinia amylovora ATCC 49946]
gi|387872975|ref|YP_005804362.1| 30S ribosomal protein S4 [Erwinia pyrifoliae DSM 12163]
gi|428786806|ref|ZP_19004283.1| 30S ribosomal protein S4 [Erwinia amylovora ACW56400]
gi|224965598|emb|CAX57130.1| 30S ribosomal protein S4 [Erwinia pyrifoliae Ep1/96]
gi|283480075|emb|CAY75991.1| 30S ribosomal protein S4 [Erwinia pyrifoliae DSM 12163]
gi|291200715|emb|CBJ47848.1| 30S ribosomal subunit protein S4 [Erwinia amylovora ATCC 49946]
gi|291555262|emb|CBA23541.1| 30S ribosomal protein S4 [Erwinia amylovora CFBP1430]
gi|312174007|emb|CBX82260.1| 30S ribosomal protein S4 [Erwinia amylovora ATCC BAA-2158]
gi|426274647|gb|EKV52388.1| 30S ribosomal protein S4 [Erwinia amylovora ACW56400]
Length = 206
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++V+IASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSIMVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|315633478|ref|ZP_07888768.1| 30S ribosomal protein S4 [Aggregatibacter segnis ATCC 33393]
gi|315477520|gb|EFU68262.1| 30S ribosomal protein S4 [Aggregatibacter segnis ATCC 33393]
Length = 206
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+ISVREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDVISVREKSKKQARIKASLELAEQKEKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|350553086|ref|ZP_08922272.1| ribosomal protein S4 [Thiorhodospira sibirica ATCC 700588]
gi|349791937|gb|EGZ45807.1| ribosomal protein S4 [Thiorhodospira sibirica ATCC 700588]
Length = 206
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DL LKS RSLD+KCKLD PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLSLKSRARSLDTKCKLDKAPGQHGDRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR Y+ E +R KG TGE +LKLLESR DNVVYRMGF TRSEARQL+
Sbjct: 60 KLRRIYGVLERQFRNYYQEASRQKGSTGENLLKLLESRLDNVVYRMGFGVTRSEARQLVG 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI S++++ D+IS+REKAKKQ RI ++L L+E W+ VDAKKME
Sbjct: 120 HKAILVNGKVVNIPSFQVRSADVISIREKAKKQVRIQDALSLAEQYGFPDWVEVDAKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P RS+ +DIN+ L
Sbjct: 180 GTFKNMPERSDLPSDINESL 199
>gi|116667413|pdb|2GY9|D Chain D, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
gi|116667465|pdb|2GYB|D Chain D, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 204
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 155/198 (78%), Gaps = 1/198 (0%)
Query: 3 RYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKV 62
RY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV
Sbjct: 1 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKV 59
Query: 63 KRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHR 122
+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+
Sbjct: 60 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 119
Query: 123 AFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGV 182
A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG
Sbjct: 120 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGT 179
Query: 183 FKSEPNRSEFANDINDLL 200
FK +P RS+ + DIN+ L
Sbjct: 180 FKRKPERSDLSADINEHL 197
>gi|88799195|ref|ZP_01114775.1| ribosomal protein S4 [Reinekea blandensis MED297]
gi|88778178|gb|EAR09373.1| ribosomal protein S4 [Reinekea sp. MED297]
Length = 206
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKCKL+ PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCKLETVPGVHGARRG-RLSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ E AR KG TGE++L+LLE R DNVVYRMGF TR+EARQL+S
Sbjct: 60 KVRRTYGVLEKQFRNYYKEAARTKGATGEVLLQLLERRLDNVVYRMGFGVTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + VNI S+++KPGD++SVREK+ Q RI ++++++ P SW+ VDAKK+E
Sbjct: 120 HKAILVNGQSVNIPSFQVKPGDVVSVREKSANQLRIKSAVDVAATRAPVSWVEVDAKKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F + P RS+ + DIN+ L
Sbjct: 180 GKFSAVPERSDLSQDINENL 199
>gi|37528520|ref|NP_931865.1| 30S ribosomal protein S4 [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|41017820|sp|Q7MYH4.1|RS4_PHOLL RecName: Full=30S ribosomal protein S4
gi|36787958|emb|CAE17075.1| 30S ribosomal protein S4 [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 206
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+E+RQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVVYRMGFGATRAESRQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++SVREK+KKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDAVKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERADLSADINEHL 199
>gi|126666789|ref|ZP_01737766.1| ribosomal protein S4 [Marinobacter sp. ELB17]
gi|399543677|ref|YP_006556985.1| 30S ribosomal protein S4 [Marinobacter sp. BSs20148]
gi|126628834|gb|EAZ99454.1| ribosomal protein S4 [Marinobacter sp. ELB17]
gi|399159009|gb|AFP29572.1| 30S ribosomal protein S4 [Marinobacter sp. BSs20148]
Length = 206
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LD+KC L+ PG HG G R S+YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDTKCNLETPPGMHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE+R DNV YRMGF STR+E RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGVTGENLLQLLEARLDNVAYRMGFGSTRAECRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI SY++KPGD++SVREKAK Q R+ +L+L+ SW+ VDA KM
Sbjct: 120 HKAILVNDKVVNIPSYQVKPGDVVSVREKAKNQLRVKGALDLASGRAAVSWVDVDATKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+ S P R E DIN+ L
Sbjct: 180 GVYSSVPTRIELPADINENL 199
>gi|22127884|ref|NP_671307.1| 30S ribosomal protein S4 [Yersinia pestis KIM10+]
gi|45440091|ref|NP_991630.1| 30S ribosomal protein S4 [Yersinia pestis biovar Microtus str.
91001]
gi|51597964|ref|YP_072155.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 32953]
gi|108809231|ref|YP_653147.1| 30S ribosomal protein S4 [Yersinia pestis Antiqua]
gi|108813996|ref|YP_649763.1| 30S ribosomal protein S4 [Yersinia pestis Nepal516]
gi|123444074|ref|YP_001008044.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145597474|ref|YP_001161549.1| 30S ribosomal protein S4 [Yersinia pestis Pestoides F]
gi|150260719|ref|ZP_01917447.1| 30S ribosomal protein S4 [Yersinia pestis CA88-4125]
gi|153947510|ref|YP_001402839.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 31758]
gi|162420100|ref|YP_001605196.1| 30S ribosomal protein S4 [Yersinia pestis Angola]
gi|165927897|ref|ZP_02223729.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166010539|ref|ZP_02231437.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213178|ref|ZP_02239213.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398630|ref|ZP_02304154.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419283|ref|ZP_02311036.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167425684|ref|ZP_02317437.1| ribosomal protein S4 [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170022568|ref|YP_001719073.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis YPIII]
gi|186897160|ref|YP_001874272.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis PB1/+]
gi|218927439|ref|YP_002345314.1| 30S ribosomal protein S4 [Yersinia pestis CO92]
gi|229836285|ref|ZP_04456452.1| 30S ribosomal subunit protein S4 [Yersinia pestis Pestoides A]
gi|229840091|ref|ZP_04460250.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842173|ref|ZP_04462328.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904527|ref|ZP_04519638.1| 30S ribosomal subunit protein S4 [Yersinia pestis Nepal516]
gi|238752667|ref|ZP_04614138.1| 30S ribosomal protein S4 [Yersinia rohdei ATCC 43380]
gi|238754196|ref|ZP_04615554.1| 30S ribosomal protein S4 [Yersinia ruckeri ATCC 29473]
gi|238758784|ref|ZP_04619958.1| 30S ribosomal protein S4 [Yersinia aldovae ATCC 35236]
gi|238783187|ref|ZP_04627213.1| 30S ribosomal protein S4 [Yersinia bercovieri ATCC 43970]
gi|238797220|ref|ZP_04640721.1| 30S ribosomal protein S4 [Yersinia mollaretii ATCC 43969]
gi|270488255|ref|ZP_06205329.1| ribosomal protein S4 [Yersinia pestis KIM D27]
gi|294502308|ref|YP_003566370.1| 30S ribosomal protein S4 [Yersinia pestis Z176003]
gi|332163237|ref|YP_004299814.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|384120792|ref|YP_005503412.1| 30S ribosomal protein S4 [Yersinia pestis D106004]
gi|384124674|ref|YP_005507288.1| 30S ribosomal protein S4 [Yersinia pestis D182038]
gi|384137790|ref|YP_005520492.1| 30S ribosomal protein S4 [Yersinia pestis A1122]
gi|384412862|ref|YP_005622224.1| 30S ribosomal protein S4 [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420260324|ref|ZP_14763007.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|420544632|ref|ZP_15042839.1| ribosomal protein S4 [Yersinia pestis PY-01]
gi|420571724|ref|ZP_15067025.1| ribosomal protein S4 [Yersinia pestis PY-06]
gi|420577076|ref|ZP_15071863.1| ribosomal protein S4 [Yersinia pestis PY-07]
gi|420582418|ref|ZP_15076729.1| ribosomal protein S4 [Yersinia pestis PY-08]
gi|420587549|ref|ZP_15081367.1| ribosomal protein S4 [Yersinia pestis PY-09]
gi|420592845|ref|ZP_15086129.1| ribosomal protein S4 [Yersinia pestis PY-10]
gi|420604088|ref|ZP_15096174.1| ribosomal protein S4 [Yersinia pestis PY-12]
gi|420625192|ref|ZP_15115046.1| ribosomal protein S4 [Yersinia pestis PY-16]
gi|420635459|ref|ZP_15124299.1| ribosomal protein S4 [Yersinia pestis PY-25]
gi|420641062|ref|ZP_15129347.1| ribosomal protein S4 [Yersinia pestis PY-29]
gi|420662646|ref|ZP_15148814.1| ribosomal protein S4 [Yersinia pestis PY-42]
gi|420667647|ref|ZP_15153334.1| ribosomal protein S4 [Yersinia pestis PY-45]
gi|420672955|ref|ZP_15158160.1| ribosomal protein S4 [Yersinia pestis PY-46]
gi|420678450|ref|ZP_15163163.1| ribosomal protein S4 [Yersinia pestis PY-47]
gi|420711354|ref|ZP_15191808.1| ribosomal protein S4 [Yersinia pestis PY-56]
gi|420727998|ref|ZP_15206371.1| ribosomal protein S4 [Yersinia pestis PY-60]
gi|420738582|ref|ZP_15215920.1| ribosomal protein S4 [Yersinia pestis PY-63]
gi|420743822|ref|ZP_15220616.1| ribosomal protein S4 [Yersinia pestis PY-64]
gi|420754744|ref|ZP_15230079.1| ribosomal protein S4 [Yersinia pestis PY-66]
gi|420771073|ref|ZP_15244115.1| ribosomal protein S4 [Yersinia pestis PY-76]
gi|420781875|ref|ZP_15253732.1| ribosomal protein S4 [Yersinia pestis PY-89]
gi|420787333|ref|ZP_15258509.1| ribosomal protein S4 [Yersinia pestis PY-90]
gi|420792777|ref|ZP_15263416.1| ribosomal protein S4 [Yersinia pestis PY-91]
gi|420797907|ref|ZP_15268021.1| ribosomal protein S4 [Yersinia pestis PY-92]
gi|420814264|ref|ZP_15282737.1| ribosomal protein S4 [Yersinia pestis PY-95]
gi|420819398|ref|ZP_15287404.1| ribosomal protein S4 [Yersinia pestis PY-96]
gi|420830301|ref|ZP_15297200.1| ribosomal protein S4 [Yersinia pestis PY-99]
gi|420845866|ref|ZP_15311276.1| ribosomal protein S4 [Yersinia pestis PY-102]
gi|421761657|ref|ZP_16198457.1| 30S ribosomal protein S4 [Yersinia pestis INS]
gi|26399435|sp|Q8ZJ88.1|RS4_YERPE RecName: Full=30S ribosomal protein S4
gi|61215490|sp|Q664U5.1|RS4_YERPS RecName: Full=30S ribosomal protein S4
gi|123245525|sp|Q1C2X0.1|RS4_YERPA RecName: Full=30S ribosomal protein S4
gi|123372820|sp|Q1CCW7.1|RS4_YERPN RecName: Full=30S ribosomal protein S4
gi|152112273|sp|A1JS02.1|RS4_YERE8 RecName: Full=30S ribosomal protein S4
gi|171769160|sp|A7FNL1.1|RS4_YERP3 RecName: Full=30S ribosomal protein S4
gi|172044482|sp|A4TH14.1|RS4_YERPP RecName: Full=30S ribosomal protein S4
gi|226703313|sp|B2K513.1|RS4_YERPB RecName: Full=30S ribosomal protein S4
gi|226703314|sp|A9R917.1|RS4_YERPG RecName: Full=30S ribosomal protein S4
gi|226703315|sp|B1JJG9.1|RS4_YERPY RecName: Full=30S ribosomal protein S4
gi|21961020|gb|AAM87558.1|AE014003_16 30S ribosomal subunit protein S4 [Yersinia pestis KIM10+]
gi|45434946|gb|AAS60507.1| 30S ribosomal protein S4 [Yersinia pestis biovar Microtus str.
91001]
gi|51591246|emb|CAH22912.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 32953]
gi|108777644|gb|ABG20163.1| SSU ribosomal protein S4P [Yersinia pestis Nepal516]
gi|108781144|gb|ABG15202.1| SSU ribosomal protein S4P [Yersinia pestis Antiqua]
gi|115346050|emb|CAL18916.1| 30S ribosomal protein S4 [Yersinia pestis CO92]
gi|122091035|emb|CAL13918.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145209170|gb|ABP38577.1| SSU ribosomal protein S4P [Yersinia pestis Pestoides F]
gi|149290127|gb|EDM40204.1| 30S ribosomal protein S4 [Yersinia pestis CA88-4125]
gi|152959005|gb|ABS46466.1| ribosomal protein S4 [Yersinia pseudotuberculosis IP 31758]
gi|162352915|gb|ABX86863.1| ribosomal protein S4 [Yersinia pestis Angola]
gi|165920173|gb|EDR37474.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990629|gb|EDR42930.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. E1979001]
gi|166205476|gb|EDR49956.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166963277|gb|EDR59298.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051134|gb|EDR62542.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055374|gb|EDR65168.1| ribosomal protein S4 [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169749102|gb|ACA66620.1| ribosomal protein S4 [Yersinia pseudotuberculosis YPIII]
gi|186700186|gb|ACC90815.1| ribosomal protein S4 [Yersinia pseudotuberculosis PB1/+]
gi|229678645|gb|EEO74750.1| 30S ribosomal subunit protein S4 [Yersinia pestis Nepal516]
gi|229690483|gb|EEO82537.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696457|gb|EEO86504.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706353|gb|EEO92360.1| 30S ribosomal subunit protein S4 [Yersinia pestis Pestoides A]
gi|238703081|gb|EEP95624.1| 30S ribosomal protein S4 [Yersinia aldovae ATCC 35236]
gi|238707692|gb|EEQ00052.1| 30S ribosomal protein S4 [Yersinia ruckeri ATCC 29473]
gi|238709094|gb|EEQ01341.1| 30S ribosomal protein S4 [Yersinia rohdei ATCC 43380]
gi|238715983|gb|EEQ07969.1| 30S ribosomal protein S4 [Yersinia bercovieri ATCC 43970]
gi|238718857|gb|EEQ10672.1| 30S ribosomal protein S4 [Yersinia mollaretii ATCC 43969]
gi|262360388|gb|ACY57109.1| 30S ribosomal protein S4 [Yersinia pestis D106004]
gi|262364338|gb|ACY60895.1| 30S ribosomal protein S4 [Yersinia pestis D182038]
gi|270336759|gb|EFA47536.1| ribosomal protein S4 [Yersinia pestis KIM D27]
gi|294352767|gb|ADE63108.1| 30S ribosomal protein S4 [Yersinia pestis Z176003]
gi|320013366|gb|ADV96937.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|325667467|gb|ADZ44111.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861830|emb|CBX72001.1| 30S ribosomal protein S4 [Yersinia enterocolitica W22703]
gi|342852919|gb|AEL71472.1| 30S ribosomal protein S4 [Yersinia pestis A1122]
gi|391433200|gb|EIQ94557.1| ribosomal protein S4 [Yersinia pestis PY-01]
gi|391451929|gb|EIR11385.1| ribosomal protein S4 [Yersinia pestis PY-06]
gi|391465087|gb|EIR23310.1| ribosomal protein S4 [Yersinia pestis PY-07]
gi|391466634|gb|EIR24690.1| ribosomal protein S4 [Yersinia pestis PY-08]
gi|391468782|gb|EIR26624.1| ribosomal protein S4 [Yersinia pestis PY-09]
gi|391482513|gb|EIR38955.1| ribosomal protein S4 [Yersinia pestis PY-10]
gi|391483079|gb|EIR39474.1| ribosomal protein S4 [Yersinia pestis PY-12]
gi|391512953|gb|EIR66225.1| ribosomal protein S4 [Yersinia pestis PY-16]
gi|391516225|gb|EIR69141.1| ribosomal protein S4 [Yersinia pestis PY-25]
gi|391528615|gb|EIR80416.1| ribosomal protein S4 [Yersinia pestis PY-29]
gi|391547341|gb|EIR97245.1| ribosomal protein S4 [Yersinia pestis PY-42]
gi|391548069|gb|EIR97905.1| ribosomal protein S4 [Yersinia pestis PY-45]
gi|391561698|gb|EIS10204.1| ribosomal protein S4 [Yersinia pestis PY-46]
gi|391562818|gb|EIS11196.1| ribosomal protein S4 [Yersinia pestis PY-47]
gi|391593227|gb|EIS37556.1| ribosomal protein S4 [Yersinia pestis PY-56]
gi|391606012|gb|EIS48794.1| ribosomal protein S4 [Yersinia pestis PY-60]
gi|391621561|gb|EIS62589.1| ribosomal protein S4 [Yersinia pestis PY-63]
gi|391629992|gb|EIS69829.1| ribosomal protein S4 [Yersinia pestis PY-64]
gi|391649596|gb|EIS86968.1| ribosomal protein S4 [Yersinia pestis PY-66]
gi|391655934|gb|EIS92617.1| ribosomal protein S4 [Yersinia pestis PY-76]
gi|391667994|gb|EIT03270.1| ribosomal protein S4 [Yersinia pestis PY-89]
gi|391669450|gb|EIT04580.1| ribosomal protein S4 [Yersinia pestis PY-90]
gi|391673077|gb|EIT07832.1| ribosomal protein S4 [Yersinia pestis PY-91]
gi|391688701|gb|EIT21896.1| ribosomal protein S4 [Yersinia pestis PY-92]
gi|391701234|gb|EIT33258.1| ribosomal protein S4 [Yersinia pestis PY-95]
gi|391704435|gb|EIT36094.1| ribosomal protein S4 [Yersinia pestis PY-96]
gi|391715901|gb|EIT46400.1| ribosomal protein S4 [Yersinia pestis PY-99]
gi|391731693|gb|EIT60362.1| ribosomal protein S4 [Yersinia pestis PY-102]
gi|404512140|gb|EKA25992.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|411177979|gb|EKS47991.1| 30S ribosomal protein S4 [Yersinia pestis INS]
Length = 206
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAVKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|315127932|ref|YP_004069935.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. SM9913]
gi|332533190|ref|ZP_08409057.1| 30S ribosomal protein S4 [Pseudoalteromonas haloplanktis ANT/505]
gi|359433061|ref|ZP_09223404.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20652]
gi|359439523|ref|ZP_09229475.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20311]
gi|359442408|ref|ZP_09232276.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20429]
gi|359448655|ref|ZP_09238176.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20480]
gi|359455885|ref|ZP_09245091.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20495]
gi|392535585|ref|ZP_10282722.1| 30S ribosomal protein S4 [Pseudoalteromonas arctica A 37-1-2]
gi|392539507|ref|ZP_10286644.1| 30S ribosomal protein S4 [Pseudoalteromonas marina mano4]
gi|392557098|ref|ZP_10304235.1| 30S ribosomal protein S4 [Pseudoalteromonas undina NCIMB 2128]
gi|414070186|ref|ZP_11406174.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. Bsw20308]
gi|315016446|gb|ADT69784.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. SM9913]
gi|332037269|gb|EGI73724.1| 30S ribosomal protein S4 [Pseudoalteromonas haloplanktis ANT/505]
gi|357920217|dbj|GAA59653.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20652]
gi|358025766|dbj|GAA65724.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20311]
gi|358035782|dbj|GAA68525.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20429]
gi|358045556|dbj|GAA74425.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20480]
gi|358047189|dbj|GAA81340.1| small subunit ribosomal protein S4 [Pseudoalteromonas sp. BSi20495]
gi|410807491|gb|EKS13469.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. Bsw20308]
Length = 206
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI SY I P D + +REK+K Q RI +LEL+E +W+ VD KK+E
Sbjct: 120 HKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDGKKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GSFKRLPERSDLSADINEQL 199
>gi|253991665|ref|YP_003043021.1| 30s ribosomal subunit protein s4 [Photorhabdus asymbiotica]
gi|253783115|emb|CAQ86280.1| 30s ribosomal subunit protein s4 [Photorhabdus asymbiotica]
Length = 206
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+E+RQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVVYRMGFGATRAESRQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++SVREK+KKQ+RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDAVKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERADLSADINEHL 199
>gi|352105679|ref|ZP_08960886.1| 30S ribosomal protein S4P [Halomonas sp. HAL1]
gi|350598256|gb|EHA14378.1| 30S ribosomal protein S4P [Halomonas sp. HAL1]
Length = 206
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS + KCK + PG HG+ R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE++L+LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGATGEVLLQLLESRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ASY++KPGD++S+REKAK Q RI ++L ++ + +WI +DAKKME
Sbjct: 120 HKAISVNGRTVNVASYQVKPGDVVSIREKAKNQARIQSALSIAANRGDIAWIEIDAKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R + + DIN+ L
Sbjct: 180 GTFKALPERGDLSADINENL 199
>gi|374619081|ref|ZP_09691615.1| SSU ribosomal protein S4P [gamma proteobacterium HIMB55]
gi|374302308|gb|EHQ56492.1| SSU ribosomal protein S4P [gamma proteobacterium HIMB55]
Length = 206
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DL LKS R+L+SKCK + PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVRALESKCKAETAPGMHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN ++VNI SY++ PGD++SVREKAKKQ R+ +++ L+E WI V+A+K+E
Sbjct: 120 HKGILVNGRVVNIPSYQVAPGDVVSVREKAKKQLRVQSAMGLAEQRPDPEWIDVNAEKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS+P R + ++IN+ L
Sbjct: 180 GTFKSKPERQDLPSEINENL 199
>gi|149912288|ref|ZP_01900859.1| 30S ribosomal protein S4 [Moritella sp. PE36]
gi|149804633|gb|EDM64692.1| 30S ribosomal protein S4 [Moritella sp. PE36]
Length = 206
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PG HG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGVHG-ARKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR + E ARLKG TGE +L LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRMYGVLEKQFRNLYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI SYK+K D +S+REKAKKQ RIA++LE+SE SW+ VD+K +E
Sbjct: 120 HKAIVVNGKVVNIPSYKVKVNDTVSIREKAKKQARIASALEISEQREKASWVEVDSKTLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+K P RS+ + DIN+ L
Sbjct: 180 GVYKRVPERSDLSADINEQL 199
>gi|290477169|ref|YP_003470084.1| 30S ribosomal protein S4 [Xenorhabdus bovienii SS-2004]
gi|289176517|emb|CBJ83326.1| 30S ribosomal subunit protein S4 [Xenorhabdus bovienii SS-2004]
Length = 206
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKL+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF +TR+E+RQ++S
Sbjct: 60 KVRRTYGVLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAESRQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN +VNIASY++ P D++SVREKAKKQ RI +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGCVVNIASYQVSPNDVVSVREKAKKQARIKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|77361711|ref|YP_341286.1| 30S ribosomal protein S4 [Pseudoalteromonas haloplanktis TAC125]
gi|90101708|sp|Q3IJJ5.1|RS4_PSEHT RecName: Full=30S ribosomal protein S4
gi|76876622|emb|CAI87844.1| 30S ribosomal subunit protein S4 [Pseudoalteromonas haloplanktis
TAC125]
Length = 206
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VN+ SY I P D + +REK+K Q RI +LEL+E +W+ VD KK+E
Sbjct: 120 HKAILVNGRVVNVPSYVIAPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDGKKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GSFKRLPERSDLSADINEQL 199
>gi|387769783|ref|ZP_10125980.1| ribosomal protein S4 [Pasteurella bettyae CCUG 2042]
gi|386905953|gb|EIJ70703.1| ribosomal protein S4 [Pasteurella bettyae CCUG 2042]
Length = 206
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG S R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ASKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQKEKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|386310754|ref|YP_006006810.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241210|ref|ZP_12867742.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433549190|ref|ZP_20505236.1| SSU ribosomal protein S4p (S9e) [Yersinia enterocolitica IP 10393]
gi|318607721|emb|CBY29219.1| SSU ribosomal protein S4p (S9e) [Yersinia enterocolitica subsp.
palearctica Y11]
gi|351779500|gb|EHB21609.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431790231|emb|CCO68276.1| SSU ribosomal protein S4p (S9e) [Yersinia enterocolitica IP 10393]
Length = 206
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAIKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|261823208|ref|YP_003261314.1| 30S ribosomal protein S4 [Pectobacterium wasabiae WPP163]
gi|421080420|ref|ZP_15541353.1| Ribosomal protein S4 [Pectobacterium wasabiae CFBP 3304]
gi|261607221|gb|ACX89707.1| ribosomal protein S4 [Pectobacterium wasabiae WPP163]
gi|385873673|gb|AFI92193.1| 30S ribosomal protein S4 [Pectobacterium sp. SCC3193]
gi|401704852|gb|EJS95042.1| Ribosomal protein S4 [Pectobacterium wasabiae CFBP 3304]
Length = 206
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 157/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQ++S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++V+IASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVSIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|254483410|ref|ZP_05096639.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2148]
gi|214036284|gb|EEB76962.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2148]
Length = 206
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKCK + PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCKAEAIPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLESR DNVVYRMGF STRSE+RQL++
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRSESRQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNIASY++K GD++++REKAKKQ R+ ++L L+ WI V+A K+E
Sbjct: 120 HKSIMVNGQVVNIASYQVKAGDVVALREKAKKQLRVQSALALAAQRGEPEWIEVNADKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R + +++IN+ L
Sbjct: 180 GTFKSVPDRQDLSSEINENL 199
>gi|325267152|ref|ZP_08133820.1| 30S ribosomal protein S4 [Kingella denitrificans ATCC 33394]
gi|324981390|gb|EGC17034.1| 30S ribosomal protein S4 [Kingella denitrificans ATCC 33394]
Length = 206
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DL+LKSARRSL+SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLYLKSARRSLESKCKMDSAPGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD+++VREKAKKQ RI ++ L+ SW+ VDA K+E
Sbjct: 120 HKALTVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEAMGLATQIGLPSWVAVDASKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+R+E +DIN+ L
Sbjct: 180 GTFKNVPDRAELYSDINEQL 199
>gi|289209305|ref|YP_003461371.1| 30S ribosomal protein S4 [Thioalkalivibrio sp. K90mix]
gi|288944936|gb|ADC72635.1| ribosomal protein S4 [Thioalkalivibrio sp. K90mix]
Length = 206
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG+DL LKS R+L++KCKLD PGQHG +R SDY Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGVDLGLKSRARALETKCKLDKAPGQHGE-RRTRLSDYAVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LEKQFR Y+ + A+ KG TGE +LKLLE R DNVVYRMGF STRSEARQL+S
Sbjct: 60 KLRRIYGVLEKQFRNYYKKAAQRKGSTGENLLKLLEGRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA LVN ++VNIA+Y+++P D++S+REKA+KQ RI +S+ L+E S SW+ VD K E
Sbjct: 120 HRAVLVNGQVVNIAAYQVQPSDVVSIREKARKQVRIQDSMTLAEQSGFPSWVEVDTSKFE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+RS+ DIN+ L
Sbjct: 180 GTFKAIPDRSDLPADINESL 199
>gi|251793850|ref|YP_003008582.1| 30S ribosomal protein S4 [Aggregatibacter aphrophilus NJ8700]
gi|416893401|ref|ZP_11924589.1| 30S ribosomal protein S4 [Aggregatibacter aphrophilus ATCC 33389]
gi|422337191|ref|ZP_16418163.1| 30S ribosomal protein S4 [Aggregatibacter aphrophilus F0387]
gi|247535249|gb|ACS98495.1| ribosomal protein S4 [Aggregatibacter aphrophilus NJ8700]
gi|347813955|gb|EGY30607.1| 30S ribosomal protein S4 [Aggregatibacter aphrophilus ATCC 33389]
gi|353345743|gb|EHB90034.1| 30S ribosomal protein S4 [Aggregatibacter aphrophilus F0387]
Length = 206
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|392553725|ref|ZP_10300862.1| 30S ribosomal protein S4 [Pseudoalteromonas spongiae UST010723-006]
Length = 206
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+ + D++ +REKAKKQ RI ++EL+E +W+ VD KK+E
Sbjct: 120 HKAIVVNGQVVNIPSFTVSAEDVVEIREKAKKQARITAAVELAEQREKPTWVEVDTKKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GTFKRLPERSDLSAEINEQL 199
>gi|416051267|ref|ZP_11577365.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|418465562|ref|ZP_13036496.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|347993285|gb|EGY34659.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|359755834|gb|EHK89996.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 206
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARRPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQKEKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|375264310|ref|YP_005021753.1| 30S ribosomal protein S4 [Vibrio sp. EJY3]
gi|369839634|gb|AEX20778.1| 30S ribosomal protein S4 [Vibrio sp. EJY3]
Length = 206
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK+Q+RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|323492143|ref|ZP_08097305.1| 30S ribosomal protein S4 [Vibrio brasiliensis LMG 20546]
gi|323313704|gb|EGA66806.1| 30S ribosomal protein S4 [Vibrio brasiliensis LMG 20546]
Length = 206
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI S+K+ D++S+REKAK+Q+RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNIPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|188535254|ref|YP_001909051.1| 30S ribosomal protein S4 [Erwinia tasmaniensis Et1/99]
gi|300718681|ref|YP_003743484.1| 30S ribosomal protein S4 [Erwinia billingiae Eb661]
gi|226699063|sp|B2VK72.1|RS4_ERWT9 RecName: Full=30S ribosomal protein S4
gi|188030296|emb|CAO98185.1| 30S ribosomal protein S4 [Erwinia tasmaniensis Et1/99]
gi|299064517|emb|CAX61637.1| 30S ribosomal protein S4 [Erwinia billingiae Eb661]
Length = 206
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRTYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++V+IASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKSIMVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|220935468|ref|YP_002514367.1| 30S ribosomal protein S4 [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254764620|sp|B8GV34.1|RS4_THISH RecName: Full=30S ribosomal protein S4
gi|219996778|gb|ACL73380.1| 30S ribosomal protein S4 [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 206
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLK RSLD+KCKLD PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKGRGRSLDTKCKLDKAPGQHGDRR-ARLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR Y+ +R+KG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KLRRIYGVLERQFRNYYKTASRMKGSTGENLLQLLERRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY+++P D+++VREKAKKQ RI +SL L+E W+ VD KKME
Sbjct: 120 HKAIQVNGQAVNIASYQVQPSDVVAVREKAKKQVRIQDSLTLAEQFGFPEWVEVDTKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P RSE +IN+ L
Sbjct: 180 GVFKSIPERSELPAEINESL 199
>gi|343508435|ref|ZP_08745778.1| 30S ribosomal protein S4 [Vibrio ichthyoenteri ATCC 700023]
gi|342793943|gb|EGU29727.1| 30S ribosomal protein S4 [Vibrio ichthyoenteri ATCC 700023]
Length = 206
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VN+ S+K+ D++++REKAK+Q+RI SLE++E +WI VD KME
Sbjct: 120 HKAIVVNGKVVNVPSFKVAANDVVAIREKAKQQSRIKASLEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEQL 199
>gi|261250393|ref|ZP_05942968.1| SSU ribosomal protein S4p (S9e) [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417953712|ref|ZP_12596755.1| 30S ribosomal protein S4 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938962|gb|EEX94949.1| SSU ribosomal protein S4p (S9e) [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342816828|gb|EGU51721.1| 30S ribosomal protein S4 [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 206
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI S+K+ D++S+REKAK+Q+RI +LE++E +WI VDA KME
Sbjct: 120 HKAILVNGKVVNIPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
FK P RS+ + DIN+ L
Sbjct: 180 ATFKRMPERSDLSADINEQL 199
>gi|387120531|ref|YP_006286414.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|415765292|ref|ZP_11482677.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416032639|ref|ZP_11572907.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|416048094|ref|ZP_11576216.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|416069570|ref|ZP_11583304.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|429735167|ref|ZP_19269142.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans Y4]
gi|444334824|ref|ZP_21150269.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
gi|347993462|gb|EGY34819.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|347999822|gb|EGY40636.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|347999941|gb|EGY40749.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|348653951|gb|EGY69612.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D17P-3]
gi|385875023|gb|AFI86582.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429149982|gb|EKX92938.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans Y4]
gi|443549845|gb|ELT58432.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
Length = 206
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDLVAVREKSKKQARIKASLELAEQKEKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|269104036|ref|ZP_06156733.1| SSU ribosomal protein S4p (S9e) [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163934|gb|EEZ42430.1| SSU ribosomal protein S4p (S9e) [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 206
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYQEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VN+ SYK+ D++S+REKAK Q RI +LE++ +W+ VD KKME
Sbjct: 120 HKAILVNGQVVNVPSYKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|28897055|ref|NP_796660.1| 30S ribosomal protein S4 [Vibrio parahaemolyticus RIMD 2210633]
gi|153840228|ref|ZP_01992895.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ3810]
gi|156973074|ref|YP_001443981.1| 30S ribosomal protein S4 [Vibrio harveyi ATCC BAA-1116]
gi|260877973|ref|ZP_05890328.1| ribosomal protein S4 [Vibrio parahaemolyticus AN-5034]
gi|260895673|ref|ZP_05904169.1| ribosomal protein S4 [Vibrio parahaemolyticus Peru-466]
gi|260903551|ref|ZP_05911946.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ4037]
gi|262392492|ref|YP_003284346.1| 30S ribosomal protein S4 [Vibrio sp. Ex25]
gi|269964713|ref|ZP_06178951.1| 30S ribosomal protein S4 [Vibrio alginolyticus 40B]
gi|350530082|ref|ZP_08909023.1| 30S ribosomal protein S4 [Vibrio rotiferianus DAT722]
gi|388600306|ref|ZP_10158702.1| 30S ribosomal protein S4 [Vibrio campbellii DS40M4]
gi|417321178|ref|ZP_12107718.1| 30S ribosomal protein S4 [Vibrio parahaemolyticus 10329]
gi|424034236|ref|ZP_17773643.1| ribosomal protein S4 [Vibrio cholerae HENC-01]
gi|424048073|ref|ZP_17785629.1| ribosomal protein S4 [Vibrio cholerae HENC-03]
gi|433656609|ref|YP_007273988.1| SSU ribosomal protein S4p (S9e) [Vibrio parahaemolyticus BB22OP]
gi|444424503|ref|ZP_21219959.1| 30S ribosomal protein S4 [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|451971161|ref|ZP_21924383.1| 30S ribosomal protein S4 [Vibrio alginolyticus E0666]
gi|31340377|sp|Q87SZ1.1|RS4_VIBPA RecName: Full=30S ribosomal protein S4
gi|171769916|sp|A7N0H7.1|RS4_VIBHB RecName: Full=30S ribosomal protein S4
gi|28805263|dbj|BAC58544.1| ribosomal protein S4 [Vibrio parahaemolyticus RIMD 2210633]
gi|149746105|gb|EDM57235.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ3810]
gi|156524668|gb|ABU69754.1| hypothetical protein VIBHAR_00753 [Vibrio harveyi ATCC BAA-1116]
gi|262336086|gb|ACY49881.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. Ex25]
gi|269830612|gb|EEZ84833.1| 30S ribosomal protein S4 [Vibrio alginolyticus 40B]
gi|308089501|gb|EFO39196.1| ribosomal protein S4 [Vibrio parahaemolyticus Peru-466]
gi|308090096|gb|EFO39791.1| ribosomal protein S4 [Vibrio parahaemolyticus AN-5034]
gi|308109051|gb|EFO46591.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ4037]
gi|328471858|gb|EGF42735.1| 30S ribosomal protein S4 [Vibrio parahaemolyticus 10329]
gi|408873387|gb|EKM12585.1| ribosomal protein S4 [Vibrio cholerae HENC-01]
gi|408883383|gb|EKM22170.1| ribosomal protein S4 [Vibrio cholerae HENC-03]
gi|432507297|gb|AGB08814.1| SSU ribosomal protein S4p (S9e) [Vibrio parahaemolyticus BB22OP]
gi|444242209|gb|ELU53724.1| 30S ribosomal protein S4 [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|451932977|gb|EMD80649.1| 30S ribosomal protein S4 [Vibrio alginolyticus E0666]
Length = 206
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK+Q RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|260779479|ref|ZP_05888369.1| SSU ribosomal protein S4p (S9e) [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604288|gb|EEX30592.1| SSU ribosomal protein S4p (S9e) [Vibrio coralliilyticus ATCC
BAA-450]
Length = 206
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK+Q+RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|374333987|ref|YP_005090674.1| 30S ribosomal protein S4 [Oceanimonas sp. GK1]
gi|372983674|gb|AEX99923.1| 30S ribosomal protein S4 [Oceanimonas sp. GK1]
Length = 206
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI S+++ P D++SVREKAKKQ RI SLELS +W+ VDA M+
Sbjct: 120 HKAILVNGQVVNIPSFQVSPEDVVSVREKAKKQARIKASLELSGQREKPTWVEVDATNMQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K P RS+ + +IN+ L
Sbjct: 180 GTYKRLPERSDLSAEINEQL 199
>gi|374314381|ref|YP_005060810.1| 30S ribosomal protein S4 [Serratia symbiotica str. 'Cinara cedri']
gi|363988607|gb|AEW44798.1| 30S ribosomal protein S4 [Serratia symbiotica str. 'Cinara cedri']
Length = 227
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/201 (62%), Positives = 155/201 (77%), Gaps = 3/201 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGS-RTSDYGYQFREK 59
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQH I+ R SDYG Q REK
Sbjct: 22 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDQLPGQH--IARKLRLSDYGIQLREK 79
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYGILE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+
Sbjct: 80 QKVRRMYGILERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 139
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH+A +VN +NIASY++ P D +SVREKAKKQ+RI +LEL+E +W+ VDA KM
Sbjct: 140 SHKAIMVNNHTINIASYQVSPNDTVSVREKAKKQSRIKAALELAEQREKSTWLEVDALKM 199
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EGVFK P R++ + +IN+ L
Sbjct: 200 EGVFKHMPERTDLSANINEHL 220
>gi|343492610|ref|ZP_08730971.1| 30S ribosomal protein S4 [Vibrio nigripulchritudo ATCC 27043]
gi|342827060|gb|EGU61460.1| 30S ribosomal protein S4 [Vibrio nigripulchritudo ATCC 27043]
Length = 206
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK+Q+RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|332289204|ref|YP_004420056.1| 30S ribosomal protein S4 [Gallibacterium anatis UMN179]
gi|330432100|gb|AEC17159.1| 30S ribosomal protein S4 [Gallibacterium anatis UMN179]
Length = 206
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+I+VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIIVNGRVVNIPSFQVSVDDVIAVREKSKKQARIKASLELAEQKEKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|343501438|ref|ZP_08739315.1| 30S ribosomal protein S4 [Vibrio tubiashii ATCC 19109]
gi|418477127|ref|ZP_13046262.1| 30S ribosomal protein S4 [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342818299|gb|EGU53167.1| 30S ribosomal protein S4 [Vibrio tubiashii ATCC 19109]
gi|384575211|gb|EIF05663.1| 30S ribosomal protein S4 [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 206
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI S+K+ D++S+REKAK+Q+RI +LE+++ +WI VD KME
Sbjct: 120 HKAILVNGKVVNIPSFKVAANDVVSIREKAKQQSRIKAALEVADQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|330827906|ref|YP_004390858.1| 30S ribosomal protein S4 [Aeromonas veronii B565]
gi|406674838|ref|ZP_11082030.1| 30S ribosomal protein S4 [Aeromonas veronii AMC35]
gi|423203648|ref|ZP_17190216.1| 30S ribosomal protein S4 [Aeromonas veronii AER39]
gi|423211422|ref|ZP_17197955.1| 30S ribosomal protein S4 [Aeromonas veronii AER397]
gi|328803042|gb|AEB48241.1| 30S ribosomal protein S4 [Aeromonas veronii B565]
gi|404612426|gb|EKB09487.1| 30S ribosomal protein S4 [Aeromonas veronii AER39]
gi|404613502|gb|EKB10523.1| 30S ribosomal protein S4 [Aeromonas veronii AER397]
gi|404628346|gb|EKB25128.1| 30S ribosomal protein S4 [Aeromonas veronii AMC35]
Length = 206
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R++DSKCK+D PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKARLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ P D+I VREKAKKQ RI SLE++ +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|359786104|ref|ZP_09289244.1| 30S ribosomal protein S4 [Halomonas sp. GFAJ-1]
gi|359296597|gb|EHK60845.1| 30S ribosomal protein S4 [Halomonas sp. GFAJ-1]
Length = 206
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS + KCK + PG HG+ R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE++L+LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGATGEVLLQLLESRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ASY++KPGD++SVREKAK Q RI SL ++ + +WI +D KKME
Sbjct: 120 HKAISVNGRTVNVASYQVKPGDVVSVREKAKNQARIQLSLTIAANRGDIAWIEIDTKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R + DIN+ L
Sbjct: 180 GTFKALPERGDLTADINENL 199
>gi|343511570|ref|ZP_08748729.1| 30S ribosomal protein S4 [Vibrio scophthalmi LMG 19158]
gi|343515848|ref|ZP_08752896.1| 30S ribosomal protein S4 [Vibrio sp. N418]
gi|342797483|gb|EGU33131.1| 30S ribosomal protein S4 [Vibrio sp. N418]
gi|342797772|gb|EGU33411.1| 30S ribosomal protein S4 [Vibrio scophthalmi LMG 19158]
Length = 206
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VN+ S+K+ D++++REKAK+Q+RI SLE++E +WI VD KME
Sbjct: 120 HKAIVVNGKVVNVPSFKVAANDVVAIREKAKQQSRIKASLEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|237806899|ref|YP_002891339.1| 30S ribosomal protein S4 [Tolumonas auensis DSM 9187]
gi|259495302|sp|C4L7V4.1|RS4_TOLAT RecName: Full=30S ribosomal protein S4
gi|237499160|gb|ACQ91753.1| ribosomal protein S4 [Tolumonas auensis DSM 9187]
Length = 206
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILEKQFR Y+ E RLKG TGE +L+LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILEKQFRNYYREATRLKGNTGENLLQLLEGRLDNVVYRMGFATTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI S ++ P D+++VREKAKKQ RI +L+L+ +WI ++A KME
Sbjct: 120 HKAIVVNGKVVNIPSSQVSPEDVVTVREKAKKQARIKAALDLAAQREKPTWIEINADKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+K P RS+ + DIN+ L
Sbjct: 180 GVYKRLPERSDLSADINEQL 199
>gi|421911839|ref|ZP_16341584.1| SSU ribosomal protein S4p (S9e) [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421914254|ref|ZP_16343903.1| SSU ribosomal protein S4p (S9e) [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|428149703|ref|ZP_18997517.1| SSU ribosomal protein S4p (S9e) [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|410114041|emb|CCM84209.1| SSU ribosomal protein S4p (S9e) [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410123402|emb|CCM86528.1| SSU ribosomal protein S4p (S9e) [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|427540463|emb|CCM93655.1| SSU ribosomal protein S4p (S9e) [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 202
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/196 (61%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 MYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RQPERSDLSADINEHL 195
>gi|254509448|ref|ZP_05121526.1| ribosomal protein S4 [Vibrio parahaemolyticus 16]
gi|323495528|ref|ZP_08100602.1| 30S ribosomal protein S4 [Vibrio sinaloensis DSM 21326]
gi|219547621|gb|EED24668.1| ribosomal protein S4 [Vibrio parahaemolyticus 16]
gi|323319409|gb|EGA72346.1| 30S ribosomal protein S4 [Vibrio sinaloensis DSM 21326]
Length = 206
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++++REKA+KQ+RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVAIREKAQKQSRIKAALEVAEQREKPTWIEVDGGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|261867278|ref|YP_003255200.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|415771214|ref|ZP_11485249.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416079371|ref|ZP_11586185.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|416082286|ref|ZP_11586589.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|416108421|ref|ZP_11591054.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|444338537|ref|ZP_21152364.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|444346851|ref|ZP_21154810.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|444348556|ref|ZP_21156183.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
gi|261412610|gb|ACX81981.1| hypothetical protein D11S_0571 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348003009|gb|EGY43666.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|348004341|gb|EGY44855.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|348010870|gb|EGY50880.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|348656382|gb|EGY74001.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443541213|gb|ELT51673.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|443544927|gb|ELT54815.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|443546736|gb|ELT56351.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
Length = 206
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDIAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DN+VYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNIVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQKEKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV K P RS+ + DIN+ L
Sbjct: 180 GVLKRVPERSDLSADINEHL 199
>gi|410088697|ref|ZP_11285386.1| SSU ribosomal protein S4p (S9e) [Morganella morganii SC01]
gi|409764832|gb|EKN48960.1| SSU ribosomal protein S4p (S9e) [Morganella morganii SC01]
Length = 202
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/196 (61%), Positives = 152/196 (77%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCKLD PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKLDQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LE+QFR Y+ E RLKG TGE +L LLE R DNV+YRMGF +TR+EARQ++SH+A
Sbjct: 60 MYGVLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVIYRMGFGATRAEARQIVSHKAV 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D+IS+REKAKKQ+RI +LEL+E +W+ VDA KMEGVFK
Sbjct: 120 MVNGRVVNIASYQVSPNDVISIREKAKKQSRIKAALELAEQREKPTWLEVDAAKMEGVFK 179
Query: 185 SEPNRSEFANDINDLL 200
P R++ + DIN+ L
Sbjct: 180 RIPERTDLSADINEHL 195
>gi|374623981|ref|ZP_09696472.1| 30S ribosomal protein S4 [Ectothiorhodospira sp. PHS-1]
gi|373943073|gb|EHQ53618.1| 30S ribosomal protein S4 [Ectothiorhodospira sp. PHS-1]
Length = 206
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DL LKS R+LDSKCKLD PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLSLKSRVRALDSKCKLDKAPGQHGD-RRTRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR Y+ E +RLKG TG+ +L+LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KLRRIYGVLERQFRNYYKEASRLKGSTGDNLLRLLECRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY++KP D+IS+REK++KQ RI +SL L+E W+ VD KKME
Sbjct: 120 HKAIQVNGRTVNIPSYQVKPTDVISIREKSRKQVRIQDSLALAEQFGFPEWVDVDTKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ DIN+ L
Sbjct: 180 GVFKNAPERSDLPADINESL 199
>gi|117618638|ref|YP_854866.1| 30S ribosomal protein S4 [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|152060928|sp|A0KF44.1|RS4_AERHH RecName: Full=30S ribosomal protein S4
gi|117560045|gb|ABK36993.1| ribosomal protein S4 [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 206
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R++DSKCK+D PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTVPGQHG-ARKARLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ P D+I VREKAKKQ RI SLE++ +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|52426079|ref|YP_089216.1| 30S ribosomal protein S4 [Mannheimia succiniciproducens MBEL55E]
gi|61215476|sp|Q65QX9.1|RS4_MANSM RecName: Full=30S ribosomal protein S4
gi|52308131|gb|AAU38631.1| RpsD protein [Mannheimia succiniciproducens MBEL55E]
Length = 206
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|304413169|ref|ZP_07394642.1| 30S ribosomal subunit protein S4 [Candidatus Regiella insecticola
LSR1]
gi|418019468|ref|ZP_12658951.1| ribosomal protein S4, bacterial/organelle type [Candidatus Regiella
insecticola R5.15]
gi|304284012|gb|EFL92405.1| 30S ribosomal subunit protein S4 [Candidatus Regiella insecticola
LSR1]
gi|347605174|gb|EGY29657.1| ribosomal protein S4, bacterial/organelle type [Candidatus Regiella
insecticola R5.15]
Length = 206
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRTIDSKCKIDQPPGQHG-AHKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN ++VNIASY++ P IIS+REKAKKQ+RI +LEL E W+ VDA KME
Sbjct: 120 HKGILVNGRVVNIASYQVLPNAIISIREKAKKQSRIRAALELFEQREKPIWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+K P R++ DIN+ L
Sbjct: 180 GVYKRLPERTDLPADINEHL 199
>gi|345429293|ref|YP_004822411.1| 30S ribosomal protein S4 [Haemophilus parainfluenzae T3T1]
gi|301155354|emb|CBW14820.1| 30S ribosomal subunit protein S4 [Haemophilus parainfluenzae T3T1]
Length = 206
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDIAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VD+ KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|334702748|ref|ZP_08518614.1| 30S ribosomal protein S4 [Aeromonas caviae Ae398]
Length = 206
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R++DSKCK+D PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTVPGQHG-ARKARLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VN+ S+++ P D+I VREKAKKQ RI SLE++ +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNVPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|444354424|ref|YP_007390568.1| SSU ribosomal protein S4p (S9e) [Enterobacter aerogenes EA1509E]
gi|443905254|emb|CCG33028.1| SSU ribosomal protein S4p (S9e) [Enterobacter aerogenes EA1509E]
Length = 202
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/196 (61%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLNRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 MYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RQPERSDLSADINEHL 195
>gi|388565199|ref|ZP_10151694.1| putative 30S ribosomal protein S4 [Hydrogenophaga sp. PBC]
gi|388267552|gb|EIK93047.1| putative 30S ribosomal protein S4 [Hydrogenophaga sp. PBC]
Length = 226
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 153/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
+ARY+GPKAKL RRE DL LKSARRS+ K K D +PGQHGR SG RTSD+G Q REKQ
Sbjct: 20 VARYLGPKAKLSRREASDLLLKSARRSISDKAKFDSKPGQHGRTSGQRTSDFGVQLREKQ 79
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR YG+LE+QFRRYF E R +G TG +L LLESR DNVV+RMGF+STR+EARQ++S
Sbjct: 80 KVKRTYGVLERQFRRYFAEADRRRGNTGANLLFLLESRLDNVVFRMGFASTRAEARQIVS 139
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN + VNI S+ +K GD+++VREK+KKQ R+ +LEL++ W+ V K+E
Sbjct: 140 HKAIVVNGQPVNIPSFLVKAGDVVAVREKSKKQARVIEALELAKQIGFPGWVDVSVDKVE 199
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EF +DIN+ L
Sbjct: 200 GVFKKAPDRDEFGSDINESL 219
>gi|386817440|ref|ZP_10104658.1| SSU ribosomal protein S4P [Thiothrix nivea DSM 5205]
gi|386422016|gb|EIJ35851.1| SSU ribosomal protein S4P [Thiothrix nivea DSM 5205]
Length = 206
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DLFLKS SL+ KCKLD PGQHG + +R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLSRREGTDLFLKSRSVSLEKKCKLDKAPGQHGE-NKARLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR YF E AR KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRNYFTEAARRKGSTGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY++KPGD++++REKAKKQTRI +S+ ++E +W+ VDAK +
Sbjct: 120 HKAISVNGQTVNIPSYQVKPGDVVAIREKAKKQTRIQDSVAVAEQMGFPAWVDVDAKGLT 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RS+ +IN+ L
Sbjct: 180 GTFKSVPDRSDLPAEINESL 199
>gi|260914657|ref|ZP_05921123.1| 30S ribosomal protein S4 [Pasteurella dagmatis ATCC 43325]
gi|260631256|gb|EEX49441.1| 30S ribosomal protein S4 [Pasteurella dagmatis ATCC 43325]
Length = 206
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TRSEARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|372271983|ref|ZP_09508031.1| 30S ribosomal protein S4 [Marinobacterium stanieri S30]
Length = 206
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+LDSKCK + PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVRALDSKCKAETVPGVHGARRG-RLSEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E AR KG TGE +L+LLE R DNVVYRMG+ STR+EARQ++S
Sbjct: 60 KVRRIYGVLERQFRGYYKEAARRKGSTGENLLQLLEGRLDNVVYRMGYGSTRAEARQVVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR VN ++VN+ SY+++PGD+++VREKAK Q RI ++LEL+ P W+ VD+ KME
Sbjct: 120 HRQITVNGQVVNVPSYQVQPGDVVAVREKAKNQLRIKHALELAAQRAPVEWVEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K+ P RS+ + DIN+ L
Sbjct: 180 GTYKALPERSDLSADINEHL 199
>gi|411011154|ref|ZP_11387483.1| 30S ribosomal protein S4 [Aeromonas aquariorum AAK1]
gi|423199216|ref|ZP_17185799.1| 30S ribosomal protein S4 [Aeromonas hydrophila SSU]
gi|404629570|gb|EKB26317.1| 30S ribosomal protein S4 [Aeromonas hydrophila SSU]
Length = 206
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R++DSKCK+D PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTVPGQHG-ARKARLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ P D+I VREKAKKQ RI +LE++ +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKAALEVAGQREKPTWVEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|301021164|ref|ZP_07185202.1| ribosomal protein S4 [Escherichia coli MS 196-1]
gi|312972443|ref|ZP_07786617.1| ribosomal protein S4 [Escherichia coli 1827-70]
gi|386616074|ref|YP_006135740.1| ribosomal protein RpsD [Escherichia coli UMNK88]
gi|386620903|ref|YP_006140483.1| 30S ribosomal protein S4 [Escherichia coli NA114]
gi|415776520|ref|ZP_11488041.1| ribosomal protein S4 [Escherichia coli 3431]
gi|415787661|ref|ZP_11494208.1| ribosomal protein S4 [Escherichia coli EPECa14]
gi|415820320|ref|ZP_11509509.1| ribosomal protein S4 [Escherichia coli OK1180]
gi|415830878|ref|ZP_11516676.1| ribosomal protein S4 [Escherichia coli OK1357]
gi|416293281|ref|ZP_11650392.1| SSU ribosomal protein S4p (S9e) [Shigella flexneri CDC 796-83]
gi|416311809|ref|ZP_11657206.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str.
1044]
gi|416320314|ref|ZP_11662866.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str.
EC1212]
gi|416326440|ref|ZP_11666649.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str.
1125]
gi|416336404|ref|ZP_11672967.1| SSU ribosomal protein S4p (S9e) [Escherichia coli WV_060327]
gi|416344196|ref|ZP_11678070.1| SSU ribosomal protein S4p (S9e) [Escherichia coli EC4100B]
gi|417087039|ref|ZP_11954086.1| ribosomal protein S4 [Escherichia coli cloneA_i1]
gi|417309812|ref|ZP_12096641.1| 30S ribosomal protein S4 [Escherichia coli PCN033]
gi|417593698|ref|ZP_12244387.1| ribosomal protein S4 [Escherichia coli 2534-86]
gi|417598690|ref|ZP_12249317.1| ribosomal protein S4 [Escherichia coli 3030-1]
gi|417604169|ref|ZP_12254733.1| ribosomal protein S4 [Escherichia coli STEC_94C]
gi|417614901|ref|ZP_12265355.1| ribosomal protein S4 [Escherichia coli STEC_EH250]
gi|417636385|ref|ZP_12286594.1| ribosomal protein S4 [Escherichia coli STEC_S1191]
gi|417641195|ref|ZP_12291327.1| ribosomal protein S4 [Escherichia coli TX1999]
gi|417663867|ref|ZP_12313447.1| SSU ribosomal protein S4p (S9e) [Escherichia coli AA86]
gi|417668774|ref|ZP_12318314.1| ribosomal protein S4 [Escherichia coli STEC_O31]
gi|417691640|ref|ZP_12340849.1| ribosomal protein S4 [Shigella boydii 5216-82]
gi|417725802|ref|ZP_12374581.1| ribosomal protein S4 [Shigella flexneri K-304]
gi|417736276|ref|ZP_12384910.1| ribosomal protein S4 [Shigella flexneri 2747-71]
gi|417757639|ref|ZP_12405704.1| ribosomal protein S4 [Escherichia coli DEC2B]
gi|418040818|ref|ZP_12679051.1| 30S ribosomal protein S4 [Escherichia coli W26]
gi|418260298|ref|ZP_12882906.1| ribosomal protein S4 [Shigella flexneri 6603-63]
gi|418956321|ref|ZP_13508249.1| 30S ribosomal protein S4 [Escherichia coli J53]
gi|418998701|ref|ZP_13546285.1| ribosomal protein S4 [Escherichia coli DEC1A]
gi|419004014|ref|ZP_13551526.1| ribosomal protein S4 [Escherichia coli DEC1B]
gi|419009688|ref|ZP_13557106.1| ribosomal protein S4 [Escherichia coli DEC1C]
gi|419015273|ref|ZP_13562612.1| ribosomal protein S4 [Escherichia coli DEC1D]
gi|419020318|ref|ZP_13567617.1| ribosomal protein S4 [Escherichia coli DEC1E]
gi|419025782|ref|ZP_13573001.1| ribosomal protein S4 [Escherichia coli DEC2A]
gi|419030912|ref|ZP_13578060.1| ribosomal protein S4 [Escherichia coli DEC2C]
gi|419041616|ref|ZP_13588634.1| ribosomal protein S4 [Escherichia coli DEC2E]
gi|419047378|ref|ZP_13594310.1| ribosomal protein S4 [Escherichia coli DEC3A]
gi|419060190|ref|ZP_13606981.1| ribosomal protein S4 [Escherichia coli DEC3C]
gi|419064561|ref|ZP_13611281.1| ribosomal protein S4 [Escherichia coli DEC3D]
gi|419072815|ref|ZP_13618397.1| ribosomal protein S4 [Escherichia coli DEC3F]
gi|419088367|ref|ZP_13633718.1| ribosomal protein S4 [Escherichia coli DEC4B]
gi|419100172|ref|ZP_13645362.1| ribosomal protein S4 [Escherichia coli DEC4D]
gi|419105910|ref|ZP_13651034.1| ribosomal protein S4 [Escherichia coli DEC4E]
gi|419128119|ref|ZP_13672993.1| ribosomal protein S4 [Escherichia coli DEC5C]
gi|419138557|ref|ZP_13683347.1| ribosomal protein S4 [Escherichia coli DEC5E]
gi|419144372|ref|ZP_13689102.1| ribosomal protein S4 [Escherichia coli DEC6A]
gi|419150344|ref|ZP_13694992.1| ribosomal protein S4 [Escherichia coli DEC6B]
gi|419166162|ref|ZP_13710613.1| ribosomal protein S4 [Escherichia coli DEC6E]
gi|419172127|ref|ZP_13716006.1| ribosomal protein S4 [Escherichia coli DEC7A]
gi|419176975|ref|ZP_13720786.1| ribosomal protein S4 [Escherichia coli DEC7B]
gi|419188308|ref|ZP_13731814.1| ribosomal protein S4 [Escherichia coli DEC7D]
gi|419193436|ref|ZP_13736881.1| ribosomal protein S4 [Escherichia coli DEC7E]
gi|419205431|ref|ZP_13748594.1| ribosomal protein S4 [Escherichia coli DEC8B]
gi|419217696|ref|ZP_13760690.1| ribosomal protein S4 [Escherichia coli DEC8D]
gi|419223445|ref|ZP_13766357.1| ribosomal protein S4 [Escherichia coli DEC8E]
gi|419228918|ref|ZP_13771759.1| ribosomal protein S4 [Escherichia coli DEC9A]
gi|419234508|ref|ZP_13777276.1| ribosomal protein S4 [Escherichia coli DEC9B]
gi|419245364|ref|ZP_13787997.1| ribosomal protein S4 [Escherichia coli DEC9D]
gi|419251225|ref|ZP_13793793.1| ribosomal protein S4 [Escherichia coli DEC9E]
gi|419256917|ref|ZP_13799417.1| ribosomal protein S4 [Escherichia coli DEC10A]
gi|419263886|ref|ZP_13806288.1| ribosomal protein S4 [Escherichia coli DEC10B]
gi|419275362|ref|ZP_13817645.1| ribosomal protein S4 [Escherichia coli DEC10D]
gi|419286213|ref|ZP_13828376.1| ribosomal protein S4 [Escherichia coli DEC10F]
gi|419291486|ref|ZP_13833571.1| ribosomal protein S4 [Escherichia coli DEC11A]
gi|419296774|ref|ZP_13838811.1| ribosomal protein S4 [Escherichia coli DEC11B]
gi|419302290|ref|ZP_13844282.1| ribosomal protein S4 [Escherichia coli DEC11C]
gi|419308302|ref|ZP_13850195.1| ribosomal protein S4 [Escherichia coli DEC11D]
gi|419313330|ref|ZP_13855188.1| ribosomal protein S4 [Escherichia coli DEC11E]
gi|419318741|ref|ZP_13860539.1| ribosomal protein S4 [Escherichia coli DEC12A]
gi|419325004|ref|ZP_13866691.1| ribosomal protein S4 [Escherichia coli DEC12B]
gi|419330948|ref|ZP_13872544.1| ribosomal protein S4 [Escherichia coli DEC12C]
gi|419336434|ref|ZP_13877951.1| ribosomal protein S4 [Escherichia coli DEC12D]
gi|419341845|ref|ZP_13883300.1| ribosomal protein S4 [Escherichia coli DEC12E]
gi|419347043|ref|ZP_13888413.1| ribosomal protein S4 [Escherichia coli DEC13A]
gi|419356976|ref|ZP_13898223.1| ribosomal protein S4 [Escherichia coli DEC13C]
gi|419363212|ref|ZP_13904405.1| ribosomal protein S4 [Escherichia coli DEC13D]
gi|419367086|ref|ZP_13908236.1| ribosomal protein S4 [Escherichia coli DEC13E]
gi|419371876|ref|ZP_13912985.1| ribosomal protein S4 [Escherichia coli DEC14A]
gi|419377360|ref|ZP_13918379.1| ribosomal protein S4 [Escherichia coli DEC14B]
gi|419382698|ref|ZP_13923640.1| ribosomal protein S4 [Escherichia coli DEC14C]
gi|419388002|ref|ZP_13928870.1| ribosomal protein S4 [Escherichia coli DEC14D]
gi|419393443|ref|ZP_13934244.1| ribosomal protein S4 [Escherichia coli DEC15A]
gi|419398543|ref|ZP_13939305.1| ribosomal protein S4 [Escherichia coli DEC15B]
gi|419403825|ref|ZP_13944544.1| ribosomal protein S4 [Escherichia coli DEC15C]
gi|419408983|ref|ZP_13949668.1| ribosomal protein S4 [Escherichia coli DEC15D]
gi|419414533|ref|ZP_13955169.1| ribosomal protein S4 [Escherichia coli DEC15E]
gi|419806432|ref|ZP_14331539.1| 30S ribosomal protein S4 [Escherichia coli AI27]
gi|420282988|ref|ZP_14785220.1| ribosomal protein S4 [Escherichia coli TW06591]
gi|420289003|ref|ZP_14791185.1| ribosomal protein S4 [Escherichia coli TW10246]
gi|420294439|ref|ZP_14796551.1| ribosomal protein S4 [Escherichia coli TW11039]
gi|420300294|ref|ZP_14802337.1| ribosomal protein S4 [Escherichia coli TW09109]
gi|420306476|ref|ZP_14808464.1| ribosomal protein S4 [Escherichia coli TW10119]
gi|420311851|ref|ZP_14813779.1| ribosomal protein S4 [Escherichia coli EC1738]
gi|420317250|ref|ZP_14819122.1| ribosomal protein S4 [Escherichia coli EC1734]
gi|420334123|ref|ZP_14835751.1| ribosomal protein S4 [Shigella flexneri K-1770]
gi|420344653|ref|ZP_14846109.1| ribosomal protein S4 [Shigella flexneri K-404]
gi|420354792|ref|ZP_14855871.1| ribosomal protein S4 [Shigella boydii 4444-74]
gi|420387536|ref|ZP_14886876.1| ribosomal protein S4 [Escherichia coli EPECa12]
gi|420393404|ref|ZP_14892649.1| ribosomal protein S4 [Escherichia coli EPEC C342-62]
gi|421778026|ref|ZP_16214612.1| 30S ribosomal protein S4 [Escherichia coli AD30]
gi|421820812|ref|ZP_16256291.1| ribosomal protein S4 [Escherichia coli 10.0821]
gi|421826132|ref|ZP_16261485.1| ribosomal protein S4 [Escherichia coli FRIK920]
gi|421832882|ref|ZP_16268162.1| ribosomal protein S4 [Escherichia coli PA7]
gi|424079452|ref|ZP_17816419.1| ribosomal protein S4 [Escherichia coli FDA505]
gi|424098980|ref|ZP_17834255.1| ribosomal protein S4 [Escherichia coli FRIK1985]
gi|424111840|ref|ZP_17846069.1| ribosomal protein S4 [Escherichia coli 93-001]
gi|424123966|ref|ZP_17857272.1| ribosomal protein S4 [Escherichia coli PA5]
gi|424149393|ref|ZP_17880763.1| ribosomal protein S4 [Escherichia coli PA15]
gi|424155241|ref|ZP_17886172.1| ribosomal protein S4 [Escherichia coli PA24]
gi|424254413|ref|ZP_17891719.1| ribosomal protein S4 [Escherichia coli PA25]
gi|424332915|ref|ZP_17897625.1| ribosomal protein S4 [Escherichia coli PA28]
gi|424451679|ref|ZP_17903347.1| ribosomal protein S4 [Escherichia coli PA32]
gi|424464329|ref|ZP_17914700.1| ribosomal protein S4 [Escherichia coli PA39]
gi|424477135|ref|ZP_17926447.1| ribosomal protein S4 [Escherichia coli PA42]
gi|424482895|ref|ZP_17931870.1| ribosomal protein S4 [Escherichia coli TW07945]
gi|424489075|ref|ZP_17937620.1| ribosomal protein S4 [Escherichia coli TW09098]
gi|424495741|ref|ZP_17943351.1| ribosomal protein S4 [Escherichia coli TW09195]
gi|424502429|ref|ZP_17949314.1| ribosomal protein S4 [Escherichia coli EC4203]
gi|424508681|ref|ZP_17955062.1| ribosomal protein S4 [Escherichia coli EC4196]
gi|424528109|ref|ZP_17971820.1| ribosomal protein S4 [Escherichia coli EC4421]
gi|424552663|ref|ZP_17994502.1| ribosomal protein S4 [Escherichia coli EC4439]
gi|424558848|ref|ZP_18000253.1| ribosomal protein S4 [Escherichia coli EC4436]
gi|424565188|ref|ZP_18006186.1| ribosomal protein S4 [Escherichia coli EC4437]
gi|424583292|ref|ZP_18022934.1| ribosomal protein S4 [Escherichia coli EC1863]
gi|424817845|ref|ZP_18242996.1| ribosomal protein S4 [Escherichia fergusonii ECD227]
gi|425121599|ref|ZP_18523284.1| ribosomal protein S4 [Escherichia coli 8.0569]
gi|425133742|ref|ZP_18534587.1| ribosomal protein S4 [Escherichia coli 8.2524]
gi|425140318|ref|ZP_18540694.1| ribosomal protein S4 [Escherichia coli 10.0833]
gi|425176171|ref|ZP_18574286.1| ribosomal protein S4 [Escherichia coli FDA504]
gi|425195248|ref|ZP_18592013.1| ribosomal protein S4 [Escherichia coli NE1487]
gi|425219986|ref|ZP_18614944.1| ribosomal protein S4 [Escherichia coli PA23]
gi|425226533|ref|ZP_18620995.1| ribosomal protein S4 [Escherichia coli PA49]
gi|425232790|ref|ZP_18626825.1| ribosomal protein S4 [Escherichia coli PA45]
gi|425238713|ref|ZP_18632428.1| ribosomal protein S4 [Escherichia coli TT12B]
gi|425244951|ref|ZP_18638252.1| ribosomal protein S4 [Escherichia coli MA6]
gi|425251139|ref|ZP_18644077.1| ribosomal protein S4 [Escherichia coli 5905]
gi|425256926|ref|ZP_18649433.1| ribosomal protein S4 [Escherichia coli CB7326]
gi|425263178|ref|ZP_18655174.1| ribosomal protein S4 [Escherichia coli EC96038]
gi|425285065|ref|ZP_18676094.1| ribosomal protein S4 [Escherichia coli TW00353]
gi|425290433|ref|ZP_18681255.1| ribosomal protein S4 [Escherichia coli 3006]
gi|425296631|ref|ZP_18686794.1| ribosomal protein S4 [Escherichia coli PA38]
gi|425307076|ref|ZP_18696755.1| ribosomal protein S4 [Escherichia coli N1]
gi|425337943|ref|ZP_18725294.1| ribosomal protein S4 [Escherichia coli EC1847]
gi|425350058|ref|ZP_18736520.1| ribosomal protein S4 [Escherichia coli EC1849]
gi|425356363|ref|ZP_18742425.1| ribosomal protein S4 [Escherichia coli EC1850]
gi|425362324|ref|ZP_18747966.1| ribosomal protein S4 [Escherichia coli EC1856]
gi|425368541|ref|ZP_18753659.1| ribosomal protein S4 [Escherichia coli EC1862]
gi|425381575|ref|ZP_18765572.1| ribosomal protein S4 [Escherichia coli EC1865]
gi|425387745|ref|ZP_18771299.1| ribosomal protein S4 [Escherichia coli EC1866]
gi|425394397|ref|ZP_18777501.1| ribosomal protein S4 [Escherichia coli EC1868]
gi|425413012|ref|ZP_18794770.1| ribosomal protein S4 [Escherichia coli NE098]
gi|425419325|ref|ZP_18800589.1| ribosomal protein S4 [Escherichia coli FRIK523]
gi|425424172|ref|ZP_18805329.1| ribosomal protein S4 [Escherichia coli 0.1288]
gi|425430599|ref|ZP_18811203.1| ribosomal protein S4 [Escherichia coli 0.1304]
gi|428955105|ref|ZP_19026895.1| ribosomal protein S4 [Escherichia coli 88.1042]
gi|428967712|ref|ZP_19038419.1| ribosomal protein S4 [Escherichia coli 90.0091]
gi|428973465|ref|ZP_19043786.1| ribosomal protein S4 [Escherichia coli 90.0039]
gi|428979936|ref|ZP_19049748.1| ribosomal protein S4 [Escherichia coli 90.2281]
gi|428985686|ref|ZP_19055073.1| ribosomal protein S4 [Escherichia coli 93.0055]
gi|428991824|ref|ZP_19060807.1| ribosomal protein S4 [Escherichia coli 93.0056]
gi|428997711|ref|ZP_19066300.1| ribosomal protein S4 [Escherichia coli 94.0618]
gi|429003991|ref|ZP_19072082.1| ribosomal protein S4 [Escherichia coli 95.0183]
gi|429022436|ref|ZP_19088951.1| ribosomal protein S4 [Escherichia coli 96.0428]
gi|429028502|ref|ZP_19094490.1| ribosomal protein S4 [Escherichia coli 96.0427]
gi|429046640|ref|ZP_19111347.1| ribosomal protein S4 [Escherichia coli 96.0107]
gi|442592597|ref|ZP_21010571.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442599328|ref|ZP_21017048.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|442607468|ref|ZP_21022238.1| SSU ribosomal protein S4p (S9e) [Escherichia coli Nissle 1917]
gi|444933342|ref|ZP_21252335.1| ribosomal protein S4 [Escherichia coli 99.0814]
gi|444939288|ref|ZP_21257984.1| ribosomal protein S4 [Escherichia coli 99.0815]
gi|444944302|ref|ZP_21262775.1| ribosomal protein S4 [Escherichia coli 99.0816]
gi|444954747|ref|ZP_21272822.1| ribosomal protein S4 [Escherichia coli 99.0848]
gi|444960921|ref|ZP_21278728.1| ribosomal protein S4 [Escherichia coli 99.1753]
gi|444961603|ref|ZP_21279375.1| ribosomal protein S4 [Escherichia coli 99.1775]
gi|444992735|ref|ZP_21309373.1| ribosomal protein S4 [Escherichia coli PA19]
gi|445004345|ref|ZP_21320720.1| ribosomal protein S4 [Escherichia coli PA2]
gi|445009494|ref|ZP_21325715.1| ribosomal protein S4 [Escherichia coli PA47]
gi|445025990|ref|ZP_21341802.1| ribosomal protein S4 [Escherichia coli 7.1982]
gi|445030858|ref|ZP_21346522.1| ribosomal protein S4 [Escherichia coli 99.1781]
gi|445042674|ref|ZP_21358032.1| ribosomal protein S4 [Escherichia coli PA35]
gi|445048476|ref|ZP_21363678.1| ribosomal protein S4 [Escherichia coli 3.4880]
gi|445054038|ref|ZP_21369007.1| ribosomal protein S4 [Escherichia coli 99.0670]
gi|30043665|gb|AAP19385.1| 30S ribosomal subunit protein S4 [Shigella flexneri 2a str. 2457T]
gi|299881640|gb|EFI89851.1| ribosomal protein S4 [Escherichia coli MS 196-1]
gi|310334820|gb|EFQ01025.1| ribosomal protein S4 [Escherichia coli 1827-70]
gi|315617098|gb|EFU97708.1| ribosomal protein S4 [Escherichia coli 3431]
gi|320187017|gb|EFW61729.1| SSU ribosomal protein S4p (S9e) [Shigella flexneri CDC 796-83]
gi|320191670|gb|EFW66320.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str.
EC1212]
gi|320195388|gb|EFW70015.1| SSU ribosomal protein S4p (S9e) [Escherichia coli WV_060327]
gi|320199483|gb|EFW74073.1| SSU ribosomal protein S4p (S9e) [Escherichia coli EC4100B]
gi|323154134|gb|EFZ40337.1| ribosomal protein S4 [Escherichia coli EPECa14]
gi|323179168|gb|EFZ64742.1| ribosomal protein S4 [Escherichia coli OK1180]
gi|323182774|gb|EFZ68175.1| ribosomal protein S4 [Escherichia coli OK1357]
gi|325498865|gb|EGC96724.1| ribosomal protein S4 [Escherichia fergusonii ECD227]
gi|326342544|gb|EGD66318.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str.
1044]
gi|326344531|gb|EGD68280.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str.
1125]
gi|330909340|gb|EGH37854.1| SSU ribosomal protein S4p (S9e) [Escherichia coli AA86]
gi|332085445|gb|EGI90611.1| ribosomal protein S4 [Shigella boydii 5216-82]
gi|332345243|gb|AEE58577.1| ribosomal protein RpsD [Escherichia coli UMNK88]
gi|332750806|gb|EGJ81213.1| ribosomal protein S4 [Shigella flexneri 2747-71]
gi|333012395|gb|EGK31776.1| ribosomal protein S4 [Shigella flexneri K-304]
gi|333971404|gb|AEG38209.1| 30S ribosomal protein S4 [Escherichia coli NA114]
gi|338768594|gb|EGP23385.1| 30S ribosomal protein S4 [Escherichia coli PCN033]
gi|345333285|gb|EGW65736.1| ribosomal protein S4 [Escherichia coli 2534-86]
gi|345347537|gb|EGW79841.1| ribosomal protein S4 [Escherichia coli STEC_94C]
gi|345349561|gb|EGW81842.1| ribosomal protein S4 [Escherichia coli 3030-1]
gi|345359916|gb|EGW92090.1| ribosomal protein S4 [Escherichia coli STEC_EH250]
gi|345385273|gb|EGX15118.1| ribosomal protein S4 [Escherichia coli STEC_S1191]
gi|345391497|gb|EGX21286.1| ribosomal protein S4 [Escherichia coli TX1999]
gi|355349959|gb|EHF99160.1| ribosomal protein S4 [Escherichia coli cloneA_i1]
gi|377840325|gb|EHU05399.1| ribosomal protein S4 [Escherichia coli DEC1A]
gi|377840465|gb|EHU05537.1| ribosomal protein S4 [Escherichia coli DEC1C]
gi|377843020|gb|EHU08061.1| ribosomal protein S4 [Escherichia coli DEC1B]
gi|377854269|gb|EHU19156.1| ribosomal protein S4 [Escherichia coli DEC1D]
gi|377857319|gb|EHU22171.1| ribosomal protein S4 [Escherichia coli DEC1E]
gi|377860494|gb|EHU25319.1| ribosomal protein S4 [Escherichia coli DEC2A]
gi|377871290|gb|EHU35954.1| ribosomal protein S4 [Escherichia coli DEC2B]
gi|377874188|gb|EHU38818.1| ribosomal protein S4 [Escherichia coli DEC2C]
gi|377886790|gb|EHU51269.1| ribosomal protein S4 [Escherichia coli DEC2E]
gi|377890086|gb|EHU54544.1| ribosomal protein S4 [Escherichia coli DEC3A]
gi|377900274|gb|EHU64608.1| ribosomal protein S4 [Escherichia coli DEC3C]
gi|377907059|gb|EHU71295.1| ribosomal protein S4 [Escherichia coli DEC3D]
gi|377927429|gb|EHU91344.1| ribosomal protein S4 [Escherichia coli DEC4B]
gi|377934591|gb|EHU98419.1| ribosomal protein S4 [Escherichia coli DEC3F]
gi|377938831|gb|EHV02594.1| ribosomal protein S4 [Escherichia coli DEC4D]
gi|377945413|gb|EHV09108.1| ribosomal protein S4 [Escherichia coli DEC4E]
gi|377970857|gb|EHV34215.1| ribosomal protein S4 [Escherichia coli DEC5C]
gi|377980681|gb|EHV43941.1| ribosomal protein S4 [Escherichia coli DEC5E]
gi|377989635|gb|EHV52801.1| ribosomal protein S4 [Escherichia coli DEC6B]
gi|377990617|gb|EHV53775.1| ribosomal protein S4 [Escherichia coli DEC6A]
gi|378007646|gb|EHV70614.1| ribosomal protein S4 [Escherichia coli DEC6E]
gi|378012865|gb|EHV75792.1| ribosomal protein S4 [Escherichia coli DEC7A]
gi|378025248|gb|EHV87892.1| ribosomal protein S4 [Escherichia coli DEC7D]
gi|378030410|gb|EHV93011.1| ribosomal protein S4 [Escherichia coli DEC7B]
gi|378035815|gb|EHV98367.1| ribosomal protein S4 [Escherichia coli DEC7E]
gi|378044885|gb|EHW07295.1| ribosomal protein S4 [Escherichia coli DEC8B]
gi|378058543|gb|EHW20751.1| ribosomal protein S4 [Escherichia coli DEC8D]
gi|378061886|gb|EHW24065.1| ribosomal protein S4 [Escherichia coli DEC8E]
gi|378069756|gb|EHW31841.1| ribosomal protein S4 [Escherichia coli DEC9A]
gi|378074643|gb|EHW36677.1| ribosomal protein S4 [Escherichia coli DEC9B]
gi|378087349|gb|EHW49209.1| ribosomal protein S4 [Escherichia coli DEC9D]
gi|378091051|gb|EHW52885.1| ribosomal protein S4 [Escherichia coli DEC9E]
gi|378097475|gb|EHW59227.1| ribosomal protein S4 [Escherichia coli DEC10A]
gi|378101105|gb|EHW62794.1| ribosomal protein S4 [Escherichia coli DEC10B]
gi|378112463|gb|EHW74042.1| ribosomal protein S4 [Escherichia coli DEC10D]
gi|378126211|gb|EHW87607.1| ribosomal protein S4 [Escherichia coli DEC11A]
gi|378126843|gb|EHW88236.1| ribosomal protein S4 [Escherichia coli DEC10F]
gi|378138995|gb|EHX00244.1| ribosomal protein S4 [Escherichia coli DEC11B]
gi|378145551|gb|EHX06713.1| ribosomal protein S4 [Escherichia coli DEC11D]
gi|378146861|gb|EHX08010.1| ribosomal protein S4 [Escherichia coli DEC11C]
gi|378155249|gb|EHX16308.1| ribosomal protein S4 [Escherichia coli DEC11E]
gi|378162347|gb|EHX23311.1| ribosomal protein S4 [Escherichia coli DEC12B]
gi|378166163|gb|EHX27089.1| ribosomal protein S4 [Escherichia coli DEC12A]
gi|378166882|gb|EHX27800.1| ribosomal protein S4 [Escherichia coli DEC12C]
gi|378179658|gb|EHX40366.1| ribosomal protein S4 [Escherichia coli DEC12D]
gi|378183755|gb|EHX44396.1| ribosomal protein S4 [Escherichia coli DEC13A]
gi|378183926|gb|EHX44565.1| ribosomal protein S4 [Escherichia coli DEC12E]
gi|378195257|gb|EHX55757.1| ribosomal protein S4 [Escherichia coli DEC13D]
gi|378196464|gb|EHX56950.1| ribosomal protein S4 [Escherichia coli DEC13C]
gi|378210278|gb|EHX70641.1| ribosomal protein S4 [Escherichia coli DEC13E]
gi|378213503|gb|EHX73815.1| ribosomal protein S4 [Escherichia coli DEC14A]
gi|378216073|gb|EHX76361.1| ribosomal protein S4 [Escherichia coli DEC14B]
gi|378224639|gb|EHX84840.1| ribosomal protein S4 [Escherichia coli DEC14C]
gi|378228557|gb|EHX88708.1| ribosomal protein S4 [Escherichia coli DEC14D]
gi|378235109|gb|EHX95181.1| ribosomal protein S4 [Escherichia coli DEC15A]
gi|378240445|gb|EHY00415.1| ribosomal protein S4 [Escherichia coli DEC15B]
gi|378244916|gb|EHY04857.1| ribosomal protein S4 [Escherichia coli DEC15C]
gi|378252779|gb|EHY12665.1| ribosomal protein S4 [Escherichia coli DEC15D]
gi|378257309|gb|EHY17149.1| ribosomal protein S4 [Escherichia coli DEC15E]
gi|383476266|gb|EID68212.1| 30S ribosomal protein S4 [Escherichia coli W26]
gi|384381081|gb|EIE38944.1| 30S ribosomal protein S4 [Escherichia coli J53]
gi|384470589|gb|EIE54693.1| 30S ribosomal protein S4 [Escherichia coli AI27]
gi|390640665|gb|EIN20116.1| ribosomal protein S4 [Escherichia coli FDA505]
gi|390658125|gb|EIN35927.1| ribosomal protein S4 [Escherichia coli FRIK1985]
gi|390658189|gb|EIN35989.1| ribosomal protein S4 [Escherichia coli 93-001]
gi|390678580|gb|EIN54531.1| ribosomal protein S4 [Escherichia coli PA5]
gi|390698824|gb|EIN73197.1| ribosomal protein S4 [Escherichia coli PA15]
gi|390719335|gb|EIN92061.1| ribosomal protein S4 [Escherichia coli PA25]
gi|390721298|gb|EIN93998.1| ribosomal protein S4 [Escherichia coli PA24]
gi|390725361|gb|EIN97870.1| ribosomal protein S4 [Escherichia coli PA28]
gi|390739584|gb|EIO10752.1| ribosomal protein S4 [Escherichia coli PA32]
gi|390763579|gb|EIO32820.1| ribosomal protein S4 [Escherichia coli PA39]
gi|390766374|gb|EIO35498.1| ribosomal protein S4 [Escherichia coli PA42]
gi|390779779|gb|EIO47493.1| ribosomal protein S4 [Escherichia coli TW06591]
gi|390787379|gb|EIO54869.1| ribosomal protein S4 [Escherichia coli TW07945]
gi|390787955|gb|EIO55428.1| ribosomal protein S4 [Escherichia coli TW10246]
gi|390794071|gb|EIO61372.1| ribosomal protein S4 [Escherichia coli TW11039]
gi|390802328|gb|EIO69368.1| ribosomal protein S4 [Escherichia coli TW09098]
gi|390804665|gb|EIO71613.1| ribosomal protein S4 [Escherichia coli TW09109]
gi|390814191|gb|EIO80771.1| ribosomal protein S4 [Escherichia coli TW10119]
gi|390823767|gb|EIO89798.1| ribosomal protein S4 [Escherichia coli EC4203]
gi|390825407|gb|EIO91327.1| ribosomal protein S4 [Escherichia coli TW09195]
gi|390828626|gb|EIO94277.1| ribosomal protein S4 [Escherichia coli EC4196]
gi|390848654|gb|EIP12114.1| ribosomal protein S4 [Escherichia coli EC4421]
gi|390876214|gb|EIP37202.1| ribosomal protein S4 [Escherichia coli EC4439]
gi|390881629|gb|EIP42204.1| ribosomal protein S4 [Escherichia coli EC4436]
gi|390891491|gb|EIP51121.1| ribosomal protein S4 [Escherichia coli EC4437]
gi|390898404|gb|EIP57677.1| ribosomal protein S4 [Escherichia coli EC1738]
gi|390906461|gb|EIP65352.1| ribosomal protein S4 [Escherichia coli EC1734]
gi|390916808|gb|EIP75249.1| ribosomal protein S4 [Escherichia coli EC1863]
gi|391243168|gb|EIQ02464.1| ribosomal protein S4 [Shigella flexneri K-1770]
gi|391261338|gb|EIQ20387.1| ribosomal protein S4 [Shigella flexneri K-404]
gi|391274479|gb|EIQ33287.1| ribosomal protein S4 [Shigella boydii 4444-74]
gi|391302890|gb|EIQ60736.1| ribosomal protein S4 [Escherichia coli EPECa12]
gi|391310245|gb|EIQ67900.1| ribosomal protein S4 [Escherichia coli EPEC C342-62]
gi|397783640|gb|EJK94498.1| ribosomal protein S4 [Escherichia coli STEC_O31]
gi|397893829|gb|EJL10284.1| ribosomal protein S4 [Shigella flexneri 6603-63]
gi|408062138|gb|EKG96644.1| ribosomal protein S4 [Escherichia coli PA7]
gi|408064516|gb|EKG98997.1| ribosomal protein S4 [Escherichia coli FRIK920]
gi|408089459|gb|EKH22769.1| ribosomal protein S4 [Escherichia coli FDA504]
gi|408106549|gb|EKH38647.1| ribosomal protein S4 [Escherichia coli NE1487]
gi|408135497|gb|EKH65277.1| ribosomal protein S4 [Escherichia coli PA23]
gi|408138324|gb|EKH67999.1| ribosomal protein S4 [Escherichia coli PA49]
gi|408144740|gb|EKH73960.1| ribosomal protein S4 [Escherichia coli PA45]
gi|408153043|gb|EKH81453.1| ribosomal protein S4 [Escherichia coli TT12B]
gi|408158142|gb|EKH86270.1| ribosomal protein S4 [Escherichia coli MA6]
gi|408162100|gb|EKH90020.1| ribosomal protein S4 [Escherichia coli 5905]
gi|408171406|gb|EKH98525.1| ribosomal protein S4 [Escherichia coli CB7326]
gi|408178109|gb|EKI04842.1| ribosomal protein S4 [Escherichia coli EC96038]
gi|408199671|gb|EKI24866.1| ribosomal protein S4 [Escherichia coli TW00353]
gi|408210429|gb|EKI34993.1| ribosomal protein S4 [Escherichia coli 3006]
gi|408214739|gb|EKI39150.1| ribosomal protein S4 [Escherichia coli PA38]
gi|408226288|gb|EKI49937.1| ribosomal protein S4 [Escherichia coli N1]
gi|408253268|gb|EKI74872.1| ribosomal protein S4 [Escherichia coli EC1847]
gi|408263729|gb|EKI84563.1| ribosomal protein S4 [Escherichia coli EC1849]
gi|408272286|gb|EKI92385.1| ribosomal protein S4 [Escherichia coli EC1850]
gi|408275202|gb|EKI95176.1| ribosomal protein S4 [Escherichia coli EC1856]
gi|408283579|gb|EKJ02736.1| ribosomal protein S4 [Escherichia coli EC1862]
gi|408294317|gb|EKJ12717.1| ribosomal protein S4 [Escherichia coli EC1865]
gi|408305250|gb|EKJ22649.1| ribosomal protein S4 [Escherichia coli EC1868]
gi|408305975|gb|EKJ23355.1| ribosomal protein S4 [Escherichia coli EC1866]
gi|408324759|gb|EKJ40684.1| ribosomal protein S4 [Escherichia coli NE098]
gi|408334861|gb|EKJ49731.1| ribosomal protein S4 [Escherichia coli FRIK523]
gi|408341609|gb|EKJ56053.1| ribosomal protein S4 [Escherichia coli 0.1288]
gi|408344281|gb|EKJ58656.1| ribosomal protein S4 [Escherichia coli 0.1304]
gi|408456931|gb|EKJ80736.1| 30S ribosomal protein S4 [Escherichia coli AD30]
gi|408566369|gb|EKK42441.1| ribosomal protein S4 [Escherichia coli 8.0569]
gi|408576824|gb|EKK52409.1| ribosomal protein S4 [Escherichia coli 10.0833]
gi|408579457|gb|EKK54917.1| ribosomal protein S4 [Escherichia coli 8.2524]
gi|408608291|gb|EKK81690.1| ribosomal protein S4 [Escherichia coli 10.0821]
gi|427202346|gb|EKV72678.1| ribosomal protein S4 [Escherichia coli 88.1042]
gi|427218777|gb|EKV87764.1| ribosomal protein S4 [Escherichia coli 90.0091]
gi|427222146|gb|EKV90939.1| ribosomal protein S4 [Escherichia coli 90.2281]
gi|427225569|gb|EKV94200.1| ribosomal protein S4 [Escherichia coli 90.0039]
gi|427239387|gb|EKW06871.1| ribosomal protein S4 [Escherichia coli 93.0056]
gi|427239792|gb|EKW07266.1| ribosomal protein S4 [Escherichia coli 93.0055]
gi|427243831|gb|EKW11186.1| ribosomal protein S4 [Escherichia coli 94.0618]
gi|427258064|gb|EKW24172.1| ribosomal protein S4 [Escherichia coli 95.0183]
gi|427274462|gb|EKW39114.1| ribosomal protein S4 [Escherichia coli 96.0428]
gi|427277117|gb|EKW41666.1| ribosomal protein S4 [Escherichia coli 96.0427]
gi|427296659|gb|EKW59708.1| ribosomal protein S4 [Escherichia coli 96.0107]
gi|441607678|emb|CCP96018.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441651923|emb|CCQ02545.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|441711325|emb|CCQ08215.1| SSU ribosomal protein S4p (S9e) [Escherichia coli Nissle 1917]
gi|444534732|gb|ELV14928.1| ribosomal protein S4 [Escherichia coli 99.0814]
gi|444544255|gb|ELV23331.1| ribosomal protein S4 [Escherichia coli 99.0815]
gi|444554294|gb|ELV31869.1| ribosomal protein S4 [Escherichia coli 99.0816]
gi|444560780|gb|ELV37923.1| ribosomal protein S4 [Escherichia coli 99.0848]
gi|444568571|gb|ELV45240.1| ribosomal protein S4 [Escherichia coli 99.1753]
gi|444586464|gb|ELV61967.1| ribosomal protein S4 [Escherichia coli 99.1775]
gi|444605014|gb|ELV79670.1| ribosomal protein S4 [Escherichia coli PA19]
gi|444611914|gb|ELV86231.1| ribosomal protein S4 [Escherichia coli PA2]
gi|444619202|gb|ELV93253.1| ribosomal protein S4 [Escherichia coli PA47]
gi|444635148|gb|ELW08586.1| ribosomal protein S4 [Escherichia coli 7.1982]
gi|444638669|gb|ELW12000.1| ribosomal protein S4 [Escherichia coli 99.1781]
gi|444651039|gb|ELW23849.1| ribosomal protein S4 [Escherichia coli PA35]
gi|444653859|gb|ELW26556.1| ribosomal protein S4 [Escherichia coli 3.4880]
gi|444675328|gb|ELW46782.1| ribosomal protein S4 [Escherichia coli 99.0670]
Length = 202
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSADINEHL 195
>gi|402843869|ref|ZP_10892253.1| ribosomal protein S4 [Klebsiella sp. OBRC7]
gi|402276034|gb|EJU25163.1| ribosomal protein S4 [Klebsiella sp. OBRC7]
Length = 202
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+SH+A
Sbjct: 60 MYGVLERQFRNYYKEAARLKGNTGENLLTLLEGRLDNVVYRMGFGATRAESRQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RQPERSDLSADINEHL 195
>gi|429111899|ref|ZP_19173669.1| SSU ribosomal protein S4p (S9e) [Cronobacter malonaticus 507]
gi|426313056|emb|CCJ99782.1| SSU ribosomal protein S4p (S9e) [Cronobacter malonaticus 507]
Length = 204
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P R++ + DIN+ L
Sbjct: 180 RKPERTDLSADINEHL 195
>gi|423204915|ref|ZP_17191471.1| 30S ribosomal protein S4 [Aeromonas veronii AMC34]
gi|404625791|gb|EKB22606.1| 30S ribosomal protein S4 [Aeromonas veronii AMC34]
Length = 206
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ P D+I VREKAKKQ RI +LE++ +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKAALEVAGQREKPTWVEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|325577150|ref|ZP_08147634.1| 30S ribosomal protein S4 [Haemophilus parainfluenzae ATCC 33392]
gi|342903398|ref|ZP_08725209.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M21621]
gi|343518649|ref|ZP_08755639.1| ribosomal protein S4 [Haemophilus pittmaniae HK 85]
gi|373467819|ref|ZP_09559108.1| ribosomal protein S4 [Haemophilus sp. oral taxon 851 str. F0397]
gi|417838897|ref|ZP_12485117.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M19107]
gi|417842273|ref|ZP_12488367.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M19501]
gi|417843939|ref|ZP_12490004.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M21127]
gi|417845089|ref|ZP_12491122.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M21639]
gi|419802859|ref|ZP_14328039.1| ribosomal protein S4 [Haemophilus parainfluenzae HK262]
gi|419838813|ref|ZP_14362233.1| ribosomal protein S4 [Haemophilus haemolyticus HK386]
gi|419845627|ref|ZP_14368894.1| ribosomal protein S4 [Haemophilus parainfluenzae HK2019]
gi|325160732|gb|EGC72853.1| 30S ribosomal protein S4 [Haemophilus parainfluenzae ATCC 33392]
gi|341947488|gb|EGT74137.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M19501]
gi|341948402|gb|EGT75032.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M21127]
gi|341955502|gb|EGT81958.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M21621]
gi|341955981|gb|EGT82426.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M21639]
gi|341956051|gb|EGT82491.1| 30S ribosomal protein S4 [Haemophilus haemolyticus M19107]
gi|343393564|gb|EGV06119.1| ribosomal protein S4 [Haemophilus pittmaniae HK 85]
gi|371757477|gb|EHO46266.1| ribosomal protein S4 [Haemophilus sp. oral taxon 851 str. F0397]
gi|385189099|gb|EIF36568.1| ribosomal protein S4 [Haemophilus parainfluenzae HK262]
gi|386415495|gb|EIJ30027.1| ribosomal protein S4 [Haemophilus parainfluenzae HK2019]
gi|386910041|gb|EIJ74703.1| ribosomal protein S4 [Haemophilus haemolyticus HK386]
Length = 206
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VD+ KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|333376289|ref|ZP_08468075.1| 30S ribosomal protein S4 [Kingella kingae ATCC 23330]
gi|381402102|ref|ZP_09926983.1| 30S ribosomal protein S4 [Kingella kingae PYKK081]
gi|332968427|gb|EGK07494.1| 30S ribosomal protein S4 [Kingella kingae ATCC 23330]
gi|380832911|gb|EIC12798.1| 30S ribosomal protein S4 [Kingella kingae PYKK081]
Length = 206
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL+LKSARRSL+SKCK++ GQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLARREGTDLYLKSARRSLESKCKMESASGQHG-AKKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+++K GD+++VREKAKKQ RI +L L+ SW++VDA KME
Sbjct: 120 HKALTVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAAQIGMPSWVSVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+R+E +DIN+ L
Sbjct: 180 GAFKNVPDRAELYSDINEQL 199
>gi|145300911|ref|YP_001143752.1| 30S ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418362585|ref|ZP_12963212.1| 30S ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|152060929|sp|A4SSY2.1|RS4_AERS4 RecName: Full=30S ribosomal protein S4
gi|142853683|gb|ABO92004.1| ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356686166|gb|EHI50776.1| 30S ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 206
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R++DSKCK+D PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKARLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ P D++ VREKAKKQ RI SLE++ +W+ VD KME
Sbjct: 120 HKAIMVNGRVVNIPSFQVSPEDVVCVREKAKKQARIKASLEVAGQREKPTWVEVDTAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|389839354|ref|YP_006341438.1| 30S ribosomal protein S4 [Cronobacter sakazakii ES15]
gi|424801336|ref|ZP_18226878.1| SSU ribosomal protein S4p (S9e) [Cronobacter sakazakii 696]
gi|429106400|ref|ZP_19168269.1| SSU ribosomal protein S4p (S9e) [Cronobacter malonaticus 681]
gi|429117073|ref|ZP_19177991.1| SSU ribosomal protein S4p (S9e) [Cronobacter sakazakii 701]
gi|387849830|gb|AFJ97927.1| 30S ribosomal protein S4 [Cronobacter sakazakii ES15]
gi|423237057|emb|CCK08748.1| SSU ribosomal protein S4p (S9e) [Cronobacter sakazakii 696]
gi|426293123|emb|CCJ94382.1| SSU ribosomal protein S4p (S9e) [Cronobacter malonaticus 681]
gi|426320202|emb|CCK04104.1| SSU ribosomal protein S4p (S9e) [Cronobacter sakazakii 701]
Length = 202
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P R++ + DIN+ L
Sbjct: 180 RKPERTDLSADINEHL 195
>gi|350560764|ref|ZP_08929604.1| ribosomal protein S4 [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349783032|gb|EGZ37315.1| ribosomal protein S4 [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 206
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DL LKS R+L++KCKLD PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGGDLGLKSRARALETKCKLDKPPGQHGDRR-TRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R YG+LEKQFR Y+ E +RLKG TGE +L+LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KLRRTYGVLEKQFRNYYKEASRLKGSTGENLLRLLEGRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA LVN + VNI SY++ P D++SVRE+A+KQ RI +S+ L+E + WI VD+ K E
Sbjct: 120 HRAILVNGRAVNIPSYQVAPADVVSVRERARKQDRIKDSMTLAEQAGMPGWIEVDSSKFE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RS+ DIN+ L
Sbjct: 180 GVFKAFPDRSDLPADINESL 199
>gi|397163013|ref|ZP_10486478.1| ribosomal protein S4 [Enterobacter radicincitans DSM 16656]
gi|420377542|ref|ZP_14877130.1| ribosomal protein S4 [Shigella flexneri 1235-66]
gi|391295083|gb|EIQ53253.1| ribosomal protein S4 [Shigella flexneri 1235-66]
gi|396095160|gb|EJI92705.1| ribosomal protein S4 [Enterobacter radicincitans DSM 16656]
Length = 202
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSADINEHL 195
>gi|421785899|ref|ZP_16222320.1| ribosomal protein S4 [Serratia plymuthica A30]
gi|407751937|gb|EKF62099.1| ribosomal protein S4 [Serratia plymuthica A30]
Length = 202
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+SH+A
Sbjct: 60 MYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ SLEL+E +W+ VDA KMEGVFK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDAAKMEGVFK 179
Query: 185 SEPNRSEFANDINDLL 200
P R++ + DIN+ L
Sbjct: 180 RMPERTDLSADINEHL 195
>gi|119946251|ref|YP_943931.1| 30S ribosomal protein S4 [Psychromonas ingrahamii 37]
gi|152060918|sp|A1SXW7.1|RS4A_PSYIN RecName: Full=30S ribosomal protein S4 A
gi|119864855|gb|ABM04332.1| SSU ribosomal protein S4P [Psychromonas ingrahamii 37]
Length = 206
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PG HG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGVHG-ARKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARL+G TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKESARLQGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI S+ +K D+I++REKAKKQ+RI +LE++ +W++VDA KME
Sbjct: 120 HKAVLVNGKVVNIPSFNVKASDVIAIREKAKKQSRIGAALEIAGQREVPTWVSVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVF +P RS+ + +IN+ L
Sbjct: 180 GVFTRQPERSDLSAEINEQL 199
>gi|15603256|ref|NP_246330.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|378775241|ref|YP_005177484.1| 30S ribosomal protein S4 [Pasteurella multocida 36950]
gi|383311237|ref|YP_005364047.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. HN06]
gi|386835257|ref|YP_006240574.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. 3480]
gi|417851415|ref|ZP_12497160.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
gi|421254011|ref|ZP_15709019.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. Anand1_buffalo]
gi|421260533|ref|ZP_15712620.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. Anand1_cattle]
gi|421264140|ref|ZP_15715145.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|425064104|ref|ZP_18467229.1| SSU ribosomal protein S4p (S9e) [Pasteurella multocida subsp.
gallicida X73]
gi|425066273|ref|ZP_18469393.1| SSU ribosomal protein S4p (S9e) [Pasteurella multocida subsp.
gallicida P1059]
gi|26399488|sp|Q9CL53.1|RS4_PASMU RecName: Full=30S ribosomal protein S4
gi|12721766|gb|AAK03475.1| RpS4 [Pasteurella multocida subsp. multocida str. Pm70]
gi|338219487|gb|EGP05136.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
gi|356597789|gb|AET16515.1| 30S ribosomal protein S4 [Pasteurella multocida 36950]
gi|380872509|gb|AFF24876.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. HN06]
gi|385201960|gb|AFI46815.1| ribosomal protein S4 [Pasteurella multocida subsp. multocida str.
3480]
gi|401688605|gb|EJS84168.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|401693147|gb|EJS87353.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. Anand1_buffalo]
gi|401694223|gb|EJS87979.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. Anand1_cattle]
gi|404381697|gb|EJZ78165.1| SSU ribosomal protein S4p (S9e) [Pasteurella multocida subsp.
gallicida X73]
gi|404381858|gb|EJZ78323.1| SSU ribosomal protein S4p (S9e) [Pasteurella multocida subsp.
gallicida P1059]
Length = 206
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|429082999|ref|ZP_19146050.1| SSU ribosomal protein S4p (S9e) [Cronobacter condimenti 1330]
gi|429098222|ref|ZP_19160328.1| SSU ribosomal protein S4p (S9e) [Cronobacter dublinensis 582]
gi|426284562|emb|CCJ86441.1| SSU ribosomal protein S4p (S9e) [Cronobacter dublinensis 582]
gi|426548186|emb|CCJ72091.1| SSU ribosomal protein S4p (S9e) [Cronobacter condimenti 1330]
Length = 202
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVGPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P R++ + DIN+ L
Sbjct: 180 RKPERTDLSADINEHL 195
>gi|399908625|ref|ZP_10777177.1| 30S ribosomal protein S4 [Halomonas sp. KM-1]
Length = 206
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS + KCK + PG HG+ R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR G TGE++L+LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRIYGVLEKQFRSYYKEAARRSGATGEVLLQLLESRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ASY++KPGD++SVREKAK Q RI ++L ++ + +WI VDAKKME
Sbjct: 120 HKAIAVNGRTVNVASYQVKPGDVVSVREKAKNQARIQSALSIAANRGDVAWIEVDAKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R + + DIN+ L
Sbjct: 180 GTFKAIPERGDLSADINENL 199
>gi|59710868|ref|YP_203644.1| 30S ribosomal protein S4 [Vibrio fischeri ES114]
gi|197334188|ref|YP_002155020.1| 30S ribosomal protein S4 [Vibrio fischeri MJ11]
gi|423684978|ref|ZP_17659786.1| 30S ribosomal protein S4 [Vibrio fischeri SR5]
gi|75507103|sp|Q5E890.1|RS4_VIBF1 RecName: Full=30S ribosomal protein S4
gi|226695098|sp|B5FGE0.1|RS4_VIBFM RecName: Full=30S ribosomal protein S4
gi|59478969|gb|AAW84756.1| 30S ribosomal subunit protein S4 [Vibrio fischeri ES114]
gi|197315678|gb|ACH65125.1| ribosomal protein S4 [Vibrio fischeri MJ11]
gi|371496025|gb|EHN71619.1| 30S ribosomal protein S4 [Vibrio fischeri SR5]
Length = 206
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ + ARLKG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKDAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN K+VN+ S+K+ D++S+REKAK+Q+RI +LE++E +WI VDA KME
Sbjct: 120 HKSILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|417830603|ref|ZP_12477139.1| ribosomal protein S4 [Shigella flexneri J1713]
gi|335573258|gb|EGM59621.1| ribosomal protein S4 [Shigella flexneri J1713]
Length = 202
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSVDINEHL 195
>gi|417715247|ref|ZP_12364191.1| ribosomal protein S4 [Shigella flexneri K-272]
gi|418304919|ref|ZP_12916713.1| ribosomal protein S4 [Escherichia coli UMNF18]
gi|332996752|gb|EGK16377.1| ribosomal protein S4 [Shigella flexneri K-272]
gi|339417017|gb|AEJ58689.1| ribosomal protein S4 [Escherichia coli UMNF18]
Length = 202
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLVLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSADINEHL 195
>gi|16272743|ref|NP_438961.1| 30S ribosomal protein S4 [Haemophilus influenzae Rd KW20]
gi|260579893|ref|ZP_05847723.1| ribosomal protein S4 [Haemophilus influenzae RdAW]
gi|378697002|ref|YP_005178960.1| 30S ribosomal protein S4 [Haemophilus influenzae 10810]
gi|1173260|sp|P44373.2|RS4_HAEIN RecName: Full=30S ribosomal protein S4
gi|1573812|gb|AAC22460.1| ribosomal protein S4 (rpS4) [Haemophilus influenzae Rd KW20]
gi|260093177|gb|EEW77110.1| ribosomal protein S4 [Haemophilus influenzae RdAW]
gi|301169520|emb|CBW29121.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae 10810]
Length = 206
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFATTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D++++REK+KKQ RI SLEL+E +W+ VD+ KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAIREKSKKQARIKASLELAEQREKPTWLEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|152978165|ref|YP_001343794.1| 30S ribosomal protein S4 [Actinobacillus succinogenes 130Z]
gi|171704198|sp|A6VLL2.1|RS4_ACTSZ RecName: Full=30S ribosomal protein S4
gi|150839888|gb|ABR73859.1| ribosomal protein S4 [Actinobacillus succinogenes 130Z]
Length = 206
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D++++REK+KKQ RI SLEL+E +W+ VD+ KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDVVAIREKSKKQARIKASLELAEQKEKPTWLEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|326793582|ref|YP_004311402.1| 30S ribosomal protein S4 [Marinomonas mediterranea MMB-1]
gi|326544346|gb|ADZ89566.1| ribosomal protein S4 [Marinomonas mediterranea MMB-1]
Length = 206
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DL LKS R+L+SKCK + PG HG G R SDYG Q REKQ
Sbjct: 1 MARYLGPTCKLSRREGTDLLLKSGARALESKCKAETVPGVHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ AR+KG TGE +L+LLESR DNVVYR GF STR+EARQL+
Sbjct: 60 KVRRTYGVLEKQFRNYYKHAARIKGATGENLLQLLESRLDNVVYRAGFGSTRAEARQLVG 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN + VN+ASY++K GD++S+REKAKKQ RI N+LELS++ T WI VDA K+E
Sbjct: 120 HKGILVNGETVNVASYQVKAGDVVSIREKAKKQLRIQNALELSKNRTSIHWIEVDATKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
FK+ P R++ + +IN+ L
Sbjct: 180 ATFKAAPERADLSAEINENL 199
>gi|68249397|ref|YP_248509.1| 30S ribosomal protein S4 [Haemophilus influenzae 86-028NP]
gi|145628304|ref|ZP_01784105.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.1-21]
gi|145630548|ref|ZP_01786328.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021]
gi|145632160|ref|ZP_01787895.1| 30S ribosomal protein S4 [Haemophilus influenzae 3655]
gi|145634787|ref|ZP_01790495.1| 30S ribosomal protein S4 [Haemophilus influenzae PittAA]
gi|145636640|ref|ZP_01792307.1| 30S ribosomal protein S4 [Haemophilus influenzae PittHH]
gi|145638397|ref|ZP_01794007.1| 30S ribosomal protein S4 [Haemophilus influenzae PittII]
gi|145640900|ref|ZP_01796482.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021]
gi|148826554|ref|YP_001291307.1| 30S ribosomal protein S4 [Haemophilus influenzae PittEE]
gi|148827990|ref|YP_001292743.1| 30S ribosomal protein S4 [Haemophilus influenzae PittGG]
gi|229844669|ref|ZP_04464808.1| 30S ribosomal protein S4 [Haemophilus influenzae 6P18H1]
gi|229845852|ref|ZP_04465964.1| 30S ribosomal protein S4 [Haemophilus influenzae 7P49H1]
gi|260581618|ref|ZP_05849415.1| ribosomal protein S4 [Haemophilus influenzae NT127]
gi|319775264|ref|YP_004137752.1| 30S ribosomal protein S4 [Haemophilus influenzae F3047]
gi|319897704|ref|YP_004135901.1| 30S ribosomal protein S4 [Haemophilus influenzae F3031]
gi|329122807|ref|ZP_08251379.1| 30S ribosomal protein S4 [Haemophilus aegyptius ATCC 11116]
gi|386266471|ref|YP_005829963.1| 30S ribosomal protein S4 [Haemophilus influenzae R2846]
gi|81336176|sp|Q4QM98.1|RS4_HAEI8 RecName: Full=30S ribosomal protein S4
gi|172048051|sp|A5UDS3.1|RS4_HAEIE RecName: Full=30S ribosomal protein S4
gi|172048057|sp|A5UHV4.1|RS4_HAEIG RecName: Full=30S ribosomal protein S4
gi|68057596|gb|AAX87849.1| 30S ribosomal protein S4 [Haemophilus influenzae 86-028NP]
gi|144980079|gb|EDJ89738.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.1-21]
gi|144983938|gb|EDJ91380.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021]
gi|144987067|gb|EDJ93597.1| 30S ribosomal protein S4 [Haemophilus influenzae 3655]
gi|145267953|gb|EDK07949.1| 30S ribosomal protein S4 [Haemophilus influenzae PittAA]
gi|145270166|gb|EDK10102.1| 30S ribosomal protein S4 [Haemophilus influenzae PittHH]
gi|145272726|gb|EDK12633.1| 30S ribosomal protein S4 [Haemophilus influenzae PittII]
gi|145274414|gb|EDK14278.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.4-21]
gi|148716714|gb|ABQ98924.1| 30S ribosomal protein S4 [Haemophilus influenzae PittEE]
gi|148719232|gb|ABR00360.1| 30S ribosomal protein S4 [Haemophilus influenzae PittGG]
gi|229810856|gb|EEP46573.1| 30S ribosomal protein S4 [Haemophilus influenzae 7P49H1]
gi|229812383|gb|EEP48073.1| 30S ribosomal protein S4 [Haemophilus influenzae 6P18H1]
gi|260095211|gb|EEW79102.1| ribosomal protein S4 [Haemophilus influenzae NT127]
gi|309751537|gb|ADO81521.1| 30S ribosomal protein S4 [Haemophilus influenzae R2866]
gi|309973707|gb|ADO96908.1| 30S ribosomal protein S4 [Haemophilus influenzae R2846]
gi|317433210|emb|CBY81585.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3031]
gi|317449855|emb|CBY86066.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3047]
gi|327472071|gb|EGF17509.1| 30S ribosomal protein S4 [Haemophilus aegyptius ATCC 11116]
Length = 206
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D++++REK+KKQ RI SLEL+E +W+ VD+ KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAIREKSKKQARIKASLELAEQREKPTWLEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|430761816|ref|YP_007217673.1| SSU ribosomal protein S4p (S9e) [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430011440|gb|AGA34192.1| SSU ribosomal protein S4p (S9e) [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 206
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DL LKS R+L++KCKLD PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGGDLGLKSRARALETKCKLDKPPGQHGDRR-TRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R YG+LEKQFR Y+ E +RLKG TGE +L+LLE R DNVVYRMGF TR+EARQL+S
Sbjct: 60 KLRRTYGVLEKQFRNYYKEASRLKGSTGENLLRLLEGRLDNVVYRMGFGCTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA LVN + VNIASY++ P D+ISVRE A+KQ RI +++ L+E + SWI VD+ K+E
Sbjct: 120 HRAILVNGRTVNIASYQVSPADVISVREGARKQVRIKDAVTLAEQAGIPSWIEVDSGKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RS+ DIN+ L
Sbjct: 180 GVFKAFPDRSDLPADINESL 199
>gi|392309050|ref|ZP_10271584.1| 30S ribosomal protein S4 [Pseudoalteromonas citrea NCIMB 1889]
Length = 206
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+ I P D + +REK+KKQ RI +LEL+E +W+ VD K +E
Sbjct: 120 HKSVMVNGRVVNIPSFVITPEDTVVIREKSKKQARIIAALELAEQREKPTWVEVDGKTLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GSFKRLPERSDLSADINEQL 199
>gi|374978053|ref|ZP_09719396.1| SSU ribosomal protein S4p (S9e) [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378957736|ref|YP_005215223.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|383498061|ref|YP_005398750.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386593092|ref|YP_006089492.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|417329216|ref|ZP_12114124.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417336819|ref|ZP_12119169.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|417344177|ref|ZP_12124578.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417352655|ref|ZP_12129812.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417361088|ref|ZP_12135059.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417368597|ref|ZP_12140083.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|417376233|ref|ZP_12145474.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|417386196|ref|ZP_12150961.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|417390038|ref|ZP_12153644.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|417485015|ref|ZP_12172329.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417520990|ref|ZP_12182784.1| SSU ribosomal protein S4p (S9e) [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|417542090|ref|ZP_12193634.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|161365805|gb|ABX69573.1| hypothetical protein SPAB_04256 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|224469739|gb|ACN47569.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|321226467|gb|EFX51517.1| SSU ribosomal protein S4p (S9e) [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|353565549|gb|EHC31292.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353565937|gb|EHC31567.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353566598|gb|EHC32029.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|353584994|gb|EHC44958.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353586222|gb|EHC45861.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353593755|gb|EHC51438.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353603958|gb|EHC58888.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353619980|gb|EHC70222.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353633944|gb|EHC80629.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353642530|gb|EHC86958.1| SSU ribosomal protein S4p (S9e) [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353659406|gb|EHC99312.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|357208347|gb|AET56393.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|357954482|gb|EHJ80651.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|380464882|gb|AFD60285.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|383800133|gb|AFH47215.1| SSU ribosomal protein S4p (S9e) [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
Length = 202
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG +K
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTYK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSADINEHL 195
>gi|119947102|ref|YP_944782.1| 30S ribosomal protein S4 [Psychromonas ingrahamii 37]
gi|152060920|sp|A1T0B8.1|RS4B_PSYIN RecName: Full=30S ribosomal protein S4 B
gi|119865706|gb|ABM05183.1| SSU ribosomal protein S4P [Psychromonas ingrahamii 37]
Length = 206
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PG HG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGVHG-ARKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARL+G TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKESARLQGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VNI S+ +K D+I++REKAKKQ+RI +LE++ +W++VDA KME
Sbjct: 120 HKAVLVNGKVVNIPSFNVKASDVIAIREKAKKQSRIGAALEIAGQREVPTWVSVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+F +P RS+ + +IN+ L
Sbjct: 180 GIFTRQPERSDLSAEINEQL 199
>gi|375129810|ref|YP_004991908.1| 30S ribosomal protein S4 [Vibrio furnissii NCTC 11218]
gi|315178982|gb|ADT85896.1| 30S ribosomal protein S4 [Vibrio furnissii NCTC 11218]
Length = 206
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D++++REKAKKQ+RI +LE++E +WI VDA ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDASSME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|127511116|ref|YP_001092313.1| 30S ribosomal protein S4 [Shewanella loihica PV-4]
gi|152112260|sp|A3Q9A6.1|RS4_SHELP RecName: Full=30S ribosomal protein S4
gi|126636411|gb|ABO22054.1| SSU ribosomal protein S4P [Shewanella loihica PV-4]
Length = 206
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG +R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLTRREGTDLFLKSGVRAIDSKCKLEAAPGQHG-ARKARLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ + ARLKG TGE +L LLE+R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRTYGVLEKQFRNYYKDAARLKGNTGENLLTLLETRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D+ISVREK++KQ RI +LE++ +W+ VDA KME
Sbjct: 120 HKSIMVNGRVVNIPSFKVSANDVISVREKSQKQARIKAALEVASQREKPTWVEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|440758063|ref|ZP_20937240.1| SSU ribosomal protein S4p (S9e) [Pantoea agglomerans 299R]
gi|436428219|gb|ELP25879.1| SSU ribosomal protein S4p (S9e) [Pantoea agglomerans 299R]
Length = 202
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/196 (61%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGGQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH++
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKSV 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
LVN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEGVFK
Sbjct: 120 LVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKMEGVFK 179
Query: 185 SEPNRSEFANDINDLL 200
P R++ + DIN+ L
Sbjct: 180 RIPERTDLSADINEHL 195
>gi|170718273|ref|YP_001785291.1| 30S ribosomal protein S4 [Haemophilus somnus 2336]
gi|189045384|sp|B0UX38.1|RS4_HAES2 RecName: Full=30S ribosomal protein S4
gi|168826402|gb|ACA31773.1| ribosomal protein S4 [Haemophilus somnus 2336]
Length = 206
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ V+A KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVEAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|312884679|ref|ZP_07744380.1| 30S ribosomal protein S4 [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367592|gb|EFP95143.1| 30S ribosomal protein S4 [Vibrio caribbenthicus ATCC BAA-2122]
Length = 206
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQF Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFHNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK+Q+RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
FK P RS+ + DIN+ L
Sbjct: 180 ATFKRLPERSDLSADINEQL 199
>gi|15642567|ref|NP_232200.1| 30S ribosomal protein S4 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|147675276|ref|YP_001218066.1| 30S ribosomal protein S4 [Vibrio cholerae O395]
gi|153820465|ref|ZP_01973132.1| ribosomal protein S4 [Vibrio cholerae NCTC 8457]
gi|227082689|ref|YP_002811240.1| 30S ribosomal protein S4 [Vibrio cholerae M66-2]
gi|227119011|ref|YP_002820907.1| ribosomal protein S4 [Vibrio cholerae O395]
gi|229507376|ref|ZP_04396881.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae BX 330286]
gi|229509700|ref|ZP_04399181.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae B33]
gi|229513495|ref|ZP_04402959.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TMA 21]
gi|229516825|ref|ZP_04406271.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae RC9]
gi|229521638|ref|ZP_04411056.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TM 11079-80]
gi|229527498|ref|ZP_04416890.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 12129(1)]
gi|229606882|ref|YP_002877530.1| 30S ribosomal protein S4 [Vibrio cholerae MJ-1236]
gi|254292241|ref|ZP_04963004.1| ribosomal protein S4 [Vibrio cholerae AM-19226]
gi|254851112|ref|ZP_05240462.1| ribosomal protein S4 [Vibrio cholerae MO10]
gi|255744459|ref|ZP_05418411.1| SSU ribosomal protein S4p (S9e) [Vibrio cholera CIRS 101]
gi|297581414|ref|ZP_06943337.1| ribosomal protein S4 [Vibrio cholerae RC385]
gi|360036442|ref|YP_004938205.1| 30S ribosomal protein S4 [Vibrio cholerae O1 str. 2010EL-1786]
gi|379742351|ref|YP_005334320.1| 30S ribosomal protein S4 [Vibrio cholerae IEC224]
gi|384425501|ref|YP_005634859.1| 30S ribosomal protein S4 [Vibrio cholerae LMA3984-4]
gi|417814582|ref|ZP_12461234.1| ribosomal protein S4 [Vibrio cholerae HC-49A2]
gi|417818320|ref|ZP_12464947.1| ribosomal protein S4 [Vibrio cholerae HCUF01]
gi|417821877|ref|ZP_12468490.1| ribosomal protein S4 [Vibrio cholerae HE39]
gi|417825784|ref|ZP_12472371.1| ribosomal protein S4 [Vibrio cholerae HE48]
gi|418335562|ref|ZP_12944470.1| ribosomal protein S4 [Vibrio cholerae HC-06A1]
gi|418338976|ref|ZP_12947869.1| ribosomal protein S4 [Vibrio cholerae HC-23A1]
gi|418347098|ref|ZP_12951850.1| ribosomal protein S4 [Vibrio cholerae HC-28A1]
gi|418350855|ref|ZP_12955585.1| ribosomal protein S4 [Vibrio cholerae HC-43A1]
gi|418356521|ref|ZP_12959239.1| ribosomal protein S4 [Vibrio cholerae HC-61A1]
gi|419827508|ref|ZP_14351006.1| ribosomal protein S4 [Vibrio cholerae CP1033(6)]
gi|419830997|ref|ZP_14354481.1| ribosomal protein S4 [Vibrio cholerae HC-1A2]
gi|419834683|ref|ZP_14358136.1| ribosomal protein S4 [Vibrio cholerae HC-61A2]
gi|419838257|ref|ZP_14361694.1| ribosomal protein S4 [Vibrio cholerae HC-46B1]
gi|421318712|ref|ZP_15769279.1| ribosomal protein S4 [Vibrio cholerae CP1032(5)]
gi|421322312|ref|ZP_15772863.1| ribosomal protein S4 [Vibrio cholerae CP1038(11)]
gi|421326110|ref|ZP_15776633.1| ribosomal protein S4 [Vibrio cholerae CP1041(14)]
gi|421329769|ref|ZP_15780278.1| ribosomal protein S4 [Vibrio cholerae CP1042(15)]
gi|421333724|ref|ZP_15784200.1| ribosomal protein S4 [Vibrio cholerae CP1046(19)]
gi|421337267|ref|ZP_15787727.1| ribosomal protein S4 [Vibrio cholerae CP1048(21)]
gi|421340692|ref|ZP_15791123.1| ribosomal protein S4 [Vibrio cholerae HC-20A2]
gi|421352269|ref|ZP_15802633.1| ribosomal protein S4 [Vibrio cholerae HE-25]
gi|421356173|ref|ZP_15806503.1| ribosomal protein S4 [Vibrio cholerae HE-45]
gi|422308500|ref|ZP_16395648.1| ribosomal protein S4 [Vibrio cholerae CP1035(8)]
gi|422897656|ref|ZP_16935092.1| ribosomal protein S4 [Vibrio cholerae HC-40A1]
gi|422903859|ref|ZP_16938818.1| ribosomal protein S4 [Vibrio cholerae HC-48A1]
gi|422907737|ref|ZP_16942529.1| ribosomal protein S4 [Vibrio cholerae HC-70A1]
gi|422914577|ref|ZP_16949080.1| ribosomal protein S4 [Vibrio cholerae HFU-02]
gi|422918399|ref|ZP_16952711.1| ribosomal protein S4 [Vibrio cholerae HC-02A1]
gi|422923861|ref|ZP_16956998.1| ribosomal protein S4 [Vibrio cholerae BJG-01]
gi|422926782|ref|ZP_16959792.1| ribosomal protein S4 [Vibrio cholerae HC-38A1]
gi|423146103|ref|ZP_17133695.1| ribosomal protein S4 [Vibrio cholerae HC-19A1]
gi|423150806|ref|ZP_17138092.1| ribosomal protein S4 [Vibrio cholerae HC-21A1]
gi|423154615|ref|ZP_17141778.1| ribosomal protein S4 [Vibrio cholerae HC-22A1]
gi|423157682|ref|ZP_17144773.1| ribosomal protein S4 [Vibrio cholerae HC-32A1]
gi|423161253|ref|ZP_17148190.1| ribosomal protein S4 [Vibrio cholerae HC-33A2]
gi|423166088|ref|ZP_17152802.1| ribosomal protein S4 [Vibrio cholerae HC-48B2]
gi|423732114|ref|ZP_17705414.1| ribosomal protein S4 [Vibrio cholerae HC-17A1]
gi|423736217|ref|ZP_17709406.1| ribosomal protein S4 [Vibrio cholerae HC-41B1]
gi|423772682|ref|ZP_17713677.1| ribosomal protein S4 [Vibrio cholerae HC-50A2]
gi|423823295|ref|ZP_17717302.1| ribosomal protein S4 [Vibrio cholerae HC-55C2]
gi|423857256|ref|ZP_17721104.1| ribosomal protein S4 [Vibrio cholerae HC-59A1]
gi|423884833|ref|ZP_17724697.1| ribosomal protein S4 [Vibrio cholerae HC-60A1]
gi|423897162|ref|ZP_17727721.1| ribosomal protein S4 [Vibrio cholerae HC-62A1]
gi|423932380|ref|ZP_17732115.1| ribosomal protein S4 [Vibrio cholerae HC-77A1]
gi|423958694|ref|ZP_17735595.1| ribosomal protein S4 [Vibrio cholerae HE-40]
gi|423985839|ref|ZP_17739151.1| ribosomal protein S4 [Vibrio cholerae HE-46]
gi|423998818|ref|ZP_17742067.1| ribosomal protein S4 [Vibrio cholerae HC-02C1]
gi|424003529|ref|ZP_17746602.1| ribosomal protein S4 [Vibrio cholerae HC-17A2]
gi|424007323|ref|ZP_17750291.1| ribosomal protein S4 [Vibrio cholerae HC-37A1]
gi|424010551|ref|ZP_17753483.1| ribosomal protein S4 [Vibrio cholerae HC-44C1]
gi|424017720|ref|ZP_17757545.1| ribosomal protein S4 [Vibrio cholerae HC-55B2]
gi|424020807|ref|ZP_17760586.1| ribosomal protein S4 [Vibrio cholerae HC-59B1]
gi|424025303|ref|ZP_17764951.1| ribosomal protein S4 [Vibrio cholerae HC-62B1]
gi|424028189|ref|ZP_17767789.1| ribosomal protein S4 [Vibrio cholerae HC-69A1]
gi|424587469|ref|ZP_18027046.1| ribosomal protein S4 [Vibrio cholerae CP1030(3)]
gi|424592264|ref|ZP_18031686.1| ribosomal protein S4 [Vibrio cholerae CP1037(10)]
gi|424596125|ref|ZP_18035442.1| ribosomal protein S4 [Vibrio cholerae CP1040(13)]
gi|424600034|ref|ZP_18039211.1| ribosomal protein S4 [Vibrio Cholerae CP1044(17)]
gi|424602794|ref|ZP_18041932.1| ribosomal protein S4 [Vibrio cholerae CP1047(20)]
gi|424607729|ref|ZP_18046668.1| ribosomal protein S4 [Vibrio cholerae CP1050(23)]
gi|424611545|ref|ZP_18050382.1| ribosomal protein S4 [Vibrio cholerae HC-39A1]
gi|424618341|ref|ZP_18057010.1| ribosomal protein S4 [Vibrio cholerae HC-42A1]
gi|424623126|ref|ZP_18061628.1| ribosomal protein S4 [Vibrio cholerae HC-47A1]
gi|424626020|ref|ZP_18064478.1| ribosomal protein S4 [Vibrio cholerae HC-50A1]
gi|424630503|ref|ZP_18068784.1| ribosomal protein S4 [Vibrio cholerae HC-51A1]
gi|424634549|ref|ZP_18072646.1| ribosomal protein S4 [Vibrio cholerae HC-52A1]
gi|424641531|ref|ZP_18079410.1| ribosomal protein S4 [Vibrio cholerae HC-56A1]
gi|424646087|ref|ZP_18083820.1| ribosomal protein S4 [Vibrio cholerae HC-56A2]
gi|424649604|ref|ZP_18087263.1| ribosomal protein S4 [Vibrio cholerae HC-57A1]
gi|424653854|ref|ZP_18091232.1| ribosomal protein S4 [Vibrio cholerae HC-57A2]
gi|429885952|ref|ZP_19367519.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae PS15]
gi|440710789|ref|ZP_20891436.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 4260B]
gi|443504903|ref|ZP_21071854.1| ribosomal protein S4 [Vibrio cholerae HC-64A1]
gi|443508809|ref|ZP_21075563.1| ribosomal protein S4 [Vibrio cholerae HC-65A1]
gi|443512647|ref|ZP_21079279.1| ribosomal protein S4 [Vibrio cholerae HC-67A1]
gi|443516206|ref|ZP_21082710.1| ribosomal protein S4 [Vibrio cholerae HC-68A1]
gi|443520000|ref|ZP_21086386.1| ribosomal protein S4 [Vibrio cholerae HC-71A1]
gi|443524892|ref|ZP_21091093.1| ribosomal protein S4 [Vibrio cholerae HC-72A2]
gi|443528693|ref|ZP_21094725.1| ribosomal protein S4 [Vibrio cholerae HC-78A1]
gi|443532474|ref|ZP_21098487.1| ribosomal protein S4 [Vibrio cholerae HC-7A1]
gi|443536289|ref|ZP_21102154.1| ribosomal protein S4 [Vibrio cholerae HC-80A1]
gi|443539819|ref|ZP_21105671.1| ribosomal protein S4 [Vibrio cholerae HC-81A1]
gi|449054998|ref|ZP_21733666.1| SSU ribosomal protein S4p [Vibrio cholerae O1 str. Inaba G4222]
gi|26399513|sp|Q9KP07.1|RS4_VIBCH RecName: Full=30S ribosomal protein S4
gi|172047566|sp|A5F573.1|RS4_VIBC3 RecName: Full=30S ribosomal protein S4
gi|254764621|sp|C3LRN4.1|RS4_VIBCM RecName: Full=30S ribosomal protein S4
gi|9657158|gb|AAF95713.1| ribosomal protein S4 [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|126508992|gb|EAZ71586.1| ribosomal protein S4 [Vibrio cholerae NCTC 8457]
gi|146317159|gb|ABQ21698.1| ribosomal protein S4 [Vibrio cholerae O395]
gi|150421843|gb|EDN13827.1| ribosomal protein S4 [Vibrio cholerae AM-19226]
gi|227010577|gb|ACP06789.1| ribosomal protein S4 [Vibrio cholerae M66-2]
gi|227014461|gb|ACP10671.1| ribosomal protein S4 [Vibrio cholerae O395]
gi|229335130|gb|EEO00615.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 12129(1)]
gi|229341232|gb|EEO06236.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TM 11079-80]
gi|229345888|gb|EEO10860.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae RC9]
gi|229349372|gb|EEO14328.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TMA 21]
gi|229353174|gb|EEO18113.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae B33]
gi|229354881|gb|EEO19802.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae BX 330286]
gi|229369537|gb|ACQ59960.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae MJ-1236]
gi|254846817|gb|EET25231.1| ribosomal protein S4 [Vibrio cholerae MO10]
gi|255737984|gb|EET93377.1| SSU ribosomal protein S4p (S9e) [Vibrio cholera CIRS 101]
gi|297534252|gb|EFH73090.1| ribosomal protein S4 [Vibrio cholerae RC385]
gi|327485054|gb|AEA79461.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae LMA3984-4]
gi|340035141|gb|EGQ96122.1| ribosomal protein S4 [Vibrio cholerae HCUF01]
gi|340035392|gb|EGQ96372.1| ribosomal protein S4 [Vibrio cholerae HC-49A2]
gi|340035913|gb|EGQ96890.1| ribosomal protein S4 [Vibrio cholerae HE39]
gi|340045642|gb|EGR06583.1| ribosomal protein S4 [Vibrio cholerae HE48]
gi|341619194|gb|EGS45048.1| ribosomal protein S4 [Vibrio cholerae HC-48A1]
gi|341619604|gb|EGS45407.1| ribosomal protein S4 [Vibrio cholerae HC-70A1]
gi|341620064|gb|EGS45842.1| ribosomal protein S4 [Vibrio cholerae HC-40A1]
gi|341635032|gb|EGS59760.1| ribosomal protein S4 [Vibrio cholerae HC-02A1]
gi|341635872|gb|EGS60577.1| ribosomal protein S4 [Vibrio cholerae HFU-02]
gi|341643253|gb|EGS67549.1| ribosomal protein S4 [Vibrio cholerae BJG-01]
gi|341645267|gb|EGS69415.1| ribosomal protein S4 [Vibrio cholerae HC-38A1]
gi|356416155|gb|EHH69791.1| ribosomal protein S4 [Vibrio cholerae HC-06A1]
gi|356416740|gb|EHH70364.1| ribosomal protein S4 [Vibrio cholerae HC-21A1]
gi|356421865|gb|EHH75353.1| ribosomal protein S4 [Vibrio cholerae HC-19A1]
gi|356427360|gb|EHH80610.1| ribosomal protein S4 [Vibrio cholerae HC-22A1]
gi|356429019|gb|EHH82238.1| ribosomal protein S4 [Vibrio cholerae HC-28A1]
gi|356429269|gb|EHH82487.1| ribosomal protein S4 [Vibrio cholerae HC-23A1]
gi|356438671|gb|EHH91675.1| ribosomal protein S4 [Vibrio cholerae HC-32A1]
gi|356443331|gb|EHH96153.1| ribosomal protein S4 [Vibrio cholerae HC-33A2]
gi|356443747|gb|EHH96565.1| ribosomal protein S4 [Vibrio cholerae HC-43A1]
gi|356448662|gb|EHI01424.1| ribosomal protein S4 [Vibrio cholerae HC-48B2]
gi|356451735|gb|EHI04418.1| ribosomal protein S4 [Vibrio cholerae HC-61A1]
gi|356647596|gb|AET27651.1| 30S ribosomal protein S4 [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795861|gb|AFC59332.1| 30S ribosomal protein S4 [Vibrio cholerae IEC224]
gi|395915625|gb|EJH26459.1| ribosomal protein S4 [Vibrio cholerae CP1032(5)]
gi|395915768|gb|EJH26600.1| ribosomal protein S4 [Vibrio cholerae CP1041(14)]
gi|395916861|gb|EJH27690.1| ribosomal protein S4 [Vibrio cholerae CP1038(11)]
gi|395926750|gb|EJH37519.1| ribosomal protein S4 [Vibrio cholerae CP1042(15)]
gi|395927086|gb|EJH37850.1| ribosomal protein S4 [Vibrio cholerae CP1046(19)]
gi|395930295|gb|EJH41043.1| ribosomal protein S4 [Vibrio cholerae CP1048(21)]
gi|395938679|gb|EJH49366.1| ribosomal protein S4 [Vibrio cholerae HC-20A2]
gi|395949287|gb|EJH59913.1| ribosomal protein S4 [Vibrio cholerae HE-45]
gi|395949669|gb|EJH60289.1| ribosomal protein S4 [Vibrio cholerae HE-25]
gi|395957566|gb|EJH68104.1| ribosomal protein S4 [Vibrio cholerae HC-56A2]
gi|395957878|gb|EJH68390.1| ribosomal protein S4 [Vibrio cholerae HC-57A2]
gi|395960439|gb|EJH70807.1| ribosomal protein S4 [Vibrio cholerae HC-42A1]
gi|395969941|gb|EJH79760.1| ribosomal protein S4 [Vibrio cholerae HC-47A1]
gi|395971718|gb|EJH81350.1| ribosomal protein S4 [Vibrio cholerae CP1030(3)]
gi|395974107|gb|EJH83643.1| ribosomal protein S4 [Vibrio cholerae CP1047(20)]
gi|408005982|gb|EKG44162.1| ribosomal protein S4 [Vibrio cholerae HC-39A1]
gi|408010773|gb|EKG48620.1| ribosomal protein S4 [Vibrio cholerae HC-50A1]
gi|408016915|gb|EKG54440.1| ribosomal protein S4 [Vibrio cholerae HC-52A1]
gi|408021884|gb|EKG59118.1| ribosomal protein S4 [Vibrio cholerae HC-56A1]
gi|408029539|gb|EKG66252.1| ribosomal protein S4 [Vibrio cholerae CP1037(10)]
gi|408030279|gb|EKG66946.1| ribosomal protein S4 [Vibrio cholerae CP1040(13)]
gi|408031115|gb|EKG67754.1| ribosomal protein S4 [Vibrio cholerae HC-57A1]
gi|408040323|gb|EKG76509.1| ribosomal protein S4 [Vibrio Cholerae CP1044(17)]
gi|408041699|gb|EKG77798.1| ribosomal protein S4 [Vibrio cholerae CP1050(23)]
gi|408053004|gb|EKG88026.1| ribosomal protein S4 [Vibrio cholerae HC-51A1]
gi|408606928|gb|EKK80341.1| ribosomal protein S4 [Vibrio cholerae CP1033(6)]
gi|408617443|gb|EKK90563.1| ribosomal protein S4 [Vibrio cholerae CP1035(8)]
gi|408619498|gb|EKK92527.1| ribosomal protein S4 [Vibrio cholerae HC-1A2]
gi|408622056|gb|EKK95045.1| ribosomal protein S4 [Vibrio cholerae HC-17A1]
gi|408628929|gb|EKL01646.1| ribosomal protein S4 [Vibrio cholerae HC-41B1]
gi|408632649|gb|EKL05089.1| ribosomal protein S4 [Vibrio cholerae HC-50A2]
gi|408634213|gb|EKL06481.1| ribosomal protein S4 [Vibrio cholerae HC-55C2]
gi|408639482|gb|EKL11292.1| ribosomal protein S4 [Vibrio cholerae HC-59A1]
gi|408639875|gb|EKL11680.1| ribosomal protein S4 [Vibrio cholerae HC-60A1]
gi|408648472|gb|EKL19812.1| ribosomal protein S4 [Vibrio cholerae HC-61A2]
gi|408653209|gb|EKL24382.1| ribosomal protein S4 [Vibrio cholerae HC-77A1]
gi|408653815|gb|EKL24964.1| ribosomal protein S4 [Vibrio cholerae HC-62A1]
gi|408656090|gb|EKL27196.1| ribosomal protein S4 [Vibrio cholerae HE-40]
gi|408663359|gb|EKL34238.1| ribosomal protein S4 [Vibrio cholerae HE-46]
gi|408844064|gb|EKL84200.1| ribosomal protein S4 [Vibrio cholerae HC-37A1]
gi|408844633|gb|EKL84757.1| ribosomal protein S4 [Vibrio cholerae HC-17A2]
gi|408852050|gb|EKL91900.1| ribosomal protein S4 [Vibrio cholerae HC-02C1]
gi|408855639|gb|EKL95338.1| ribosomal protein S4 [Vibrio cholerae HC-46B1]
gi|408858341|gb|EKL98017.1| ribosomal protein S4 [Vibrio cholerae HC-55B2]
gi|408862944|gb|EKM02443.1| ribosomal protein S4 [Vibrio cholerae HC-44C1]
gi|408866152|gb|EKM05539.1| ribosomal protein S4 [Vibrio cholerae HC-59B1]
gi|408869388|gb|EKM08687.1| ribosomal protein S4 [Vibrio cholerae HC-62B1]
gi|408878043|gb|EKM17057.1| ribosomal protein S4 [Vibrio cholerae HC-69A1]
gi|429227098|gb|EKY33153.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae PS15]
gi|439973522|gb|ELP49735.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 4260B]
gi|443430626|gb|ELS73185.1| ribosomal protein S4 [Vibrio cholerae HC-64A1]
gi|443434458|gb|ELS80611.1| ribosomal protein S4 [Vibrio cholerae HC-65A1]
gi|443438289|gb|ELS88010.1| ribosomal protein S4 [Vibrio cholerae HC-67A1]
gi|443442413|gb|ELS95722.1| ribosomal protein S4 [Vibrio cholerae HC-68A1]
gi|443446244|gb|ELT02910.1| ribosomal protein S4 [Vibrio cholerae HC-71A1]
gi|443448924|gb|ELT09227.1| ribosomal protein S4 [Vibrio cholerae HC-72A2]
gi|443452916|gb|ELT16751.1| ribosomal protein S4 [Vibrio cholerae HC-78A1]
gi|443456648|gb|ELT24046.1| ribosomal protein S4 [Vibrio cholerae HC-7A1]
gi|443460431|gb|ELT31517.1| ribosomal protein S4 [Vibrio cholerae HC-80A1]
gi|443464503|gb|ELT39165.1| ribosomal protein S4 [Vibrio cholerae HC-81A1]
gi|448265616|gb|EMB02850.1| SSU ribosomal protein S4p [Vibrio cholerae O1 str. Inaba G4222]
Length = 206
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D+++VREKAKKQ+RI +LE++E +WI VD ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|386286896|ref|ZP_10064077.1| 30S ribosomal protein S4 [gamma proteobacterium BDW918]
gi|385280048|gb|EIF43979.1| 30S ribosomal protein S4 [gamma proteobacterium BDW918]
Length = 206
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS R LDSKCK + PG HG G R SDYG Q REKQ
Sbjct: 1 MARYLGPSCKLSRREGTDLFLKSGVRPLDSKCKAETAPGMHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ + AR KG TGE +L+LLESR DNVVYR+GF STR+E+RQL+S
Sbjct: 60 KVRRMYGVLEKQFRAYYAKAARRKGATGENLLQLLESRLDNVVYRIGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN K VN+ SY+++ GD++SVREKAK Q RI +++ L+ +WI ++A KME
Sbjct: 120 HKSVLVNGKTVNVPSYQVQAGDVVSVREKAKAQLRIQSAITLAAQRGDCAWIDINATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P+RS+ +++IN+ L
Sbjct: 180 GVFKSVPDRSDLSSEINEQL 199
>gi|333909683|ref|YP_004483269.1| 30S ribosomal protein S4 [Marinomonas posidonica IVIA-Po-181]
gi|333479689|gb|AEF56350.1| ribosomal protein S4 [Marinomonas posidonica IVIA-Po-181]
Length = 206
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+L+SKCK + PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLSRREGTDLQLKSGSRALESKCKAETVPGVHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ ARLKG TGE +L+LLESR DNVVYR GF STR+EARQL+
Sbjct: 60 KVRRMYGVLEKQFRNYYKSAARLKGATGENLLQLLESRLDNVVYRAGFGSTRAEARQLVG 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN VNI SY++K GD++S+REKAKKQ R+ ++LELS++ P WI VDA K+E
Sbjct: 120 HKGILVNGATVNIPSYQVKAGDVVSIREKAKKQLRVQSALELSKNRAPIHWIEVDATKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
FK+ P R++ + +IN+ L
Sbjct: 180 ATFKAAPERADLSAEINENL 199
>gi|167855326|ref|ZP_02478094.1| 30S ribosomal protein S4 [Haemophilus parasuis 29755]
gi|219871572|ref|YP_002475947.1| 30S ribosomal protein S4 [Haemophilus parasuis SH0165]
gi|254764591|sp|B8F6P7.1|RS4_HAEPS RecName: Full=30S ribosomal protein S4
gi|167853584|gb|EDS24830.1| 30S ribosomal protein S4 [Haemophilus parasuis 29755]
gi|219691776|gb|ACL32999.1| 30S ribosomal protein S4 [Haemophilus parasuis SH0165]
Length = 206
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI SY++ D+I+VREK+KKQ RI SLEL+ +W+ VDA KME
Sbjct: 120 HKSIVVNGRVVNIPSYQVSVDDVIAVREKSKKQARIKASLELATQREKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRTPERSDLSADINEHL 199
>gi|110833282|ref|YP_692141.1| 30S ribosomal protein S4 [Alcanivorax borkumensis SK2]
gi|123149715|sp|Q0VSH9.1|RS4_ALCBS RecName: Full=30S ribosomal protein S4
gi|110646393|emb|CAL15869.1| 30S ribosomal protein S4 [Alcanivorax borkumensis SK2]
Length = 210
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/203 (61%), Positives = 152/203 (74%), Gaps = 3/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG---SRTSDYGYQFR 57
MARYIGPK KL RREG DLFLKS R L+SKCK D PGQ SG +R SDYG Q R
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLESKCKADQAPGQAAGASGRRPARLSDYGVQLR 60
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R YG+LEKQFR Y+ + A KG TGE++L+LLE R DNVVYRMGF STRSEARQ
Sbjct: 61 EKQKVRRTYGVLEKQFRSYYKKAAASKGATGEVLLQLLEGRLDNVVYRMGFGSTRSEARQ 120
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SHRA LVN + VN+ASY++KPGD I+VREK+K Q R+ N++EL++ WI VD K
Sbjct: 121 LVSHRAILVNGQSVNVASYQVKPGDQINVREKSKNQLRVKNAMELAQQRGFMPWIEVDDK 180
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+EG +K++P R + +IN+ L
Sbjct: 181 KLEGTYKAKPERIDLPAEINENL 203
>gi|295059463|gb|ADF64201.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 202
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+RQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RQPERSDLSADINEHL 195
>gi|350563335|ref|ZP_08932157.1| ribosomal protein S4 [Thioalkalimicrobium aerophilum AL3]
gi|349779199|gb|EGZ33546.1| ribosomal protein S4 [Thioalkalimicrobium aerophilum AL3]
Length = 206
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS RS+DSKCK+D PGQHG +R ++YG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGARSIDSKCKIDQAPGQHG-ARRARVTEYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEK+FR Y+ E R KG TG +L++LESR DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKKFRLYYKEADRRKGSTGVNLLQILESRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY++ GD+++VREKA+ QTRIA +LELS SW+ VDAK +
Sbjct: 120 HKAIQVNGQTVNIPSYEVSAGDVVAVREKARNQTRIAQALELSAKMGQASWLEVDAKAFQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RS+ ++DI++ L
Sbjct: 180 GTFKSVPDRSDLSSDISENL 199
>gi|119773378|ref|YP_926118.1| 30S ribosomal protein S4 [Shewanella amazonensis SB2B]
gi|152112259|sp|A1S242.1|RS4_SHEAM RecName: Full=30S ribosomal protein S4
gi|119765878|gb|ABL98448.1| SSU ribosomal protein S4P [Shewanella amazonensis SB2B]
Length = 206
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKPRLSEYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE+R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VDA KME
Sbjct: 120 HKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|113460232|ref|YP_718290.1| 30S ribosomal protein S4 [Haemophilus somnus 129PT]
gi|123327085|sp|Q0I138.1|RS4_HAES1 RecName: Full=30S ribosomal protein S4
gi|112822275|gb|ABI24364.1| SSU ribosomal protein S4P [Haemophilus somnus 129PT]
Length = 206
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E +W+ V+A KME
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQRERPTWLEVEAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRVPERSDLSADINEHL 199
>gi|365539202|ref|ZP_09364377.1| 30S ribosomal protein S4 [Vibrio ordalii ATCC 33509]
Length = 206
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGIRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D++++REKAKKQ+RI +LE++E +WI VD +ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDGGQME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|408374104|ref|ZP_11171794.1| 30S ribosomal protein S4 [Alcanivorax hongdengensis A-11-3]
gi|407765989|gb|EKF74436.1| 30S ribosomal protein S4 [Alcanivorax hongdengensis A-11-3]
Length = 208
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/202 (61%), Positives = 153/202 (75%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQH--GRISGSRTSDYGYQFRE 58
MARYIGPK KL RREG DLFLKS R L+SKCK + PGQ GR G R SDYG Q RE
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLESKCKAEQAPGQAAGGRRPG-RLSDYGVQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKV+RMYG+LEKQFR Y+ + AR KG TGE++L+LLE R DNVVYRMGF STR+EARQL
Sbjct: 60 KQKVRRMYGVLEKQFRSYYKKAARSKGATGEVLLQLLEGRLDNVVYRMGFGSTRAEARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SHRA LVN + VN+ASY++KPGD+I+VREK+K Q R+ N++EL++ WI VD KK
Sbjct: 120 VSHRAILVNGQSVNVASYQVKPGDVINVREKSKNQLRVKNAMELAQQRGFMPWIEVDEKK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
+EG K+ P R + +IN+ L
Sbjct: 180 LEGTLKALPERIDLPAEINENL 201
>gi|375110355|ref|ZP_09756580.1| 30S ribosomal protein S4 [Alishewanella jeotgali KCTC 22429]
gi|374569597|gb|EHR40755.1| 30S ribosomal protein S4 [Alishewanella jeotgali KCTC 22429]
Length = 206
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKC L PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCNLTTAPGQHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L LLESR DNVVYRMG +STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLALLESRLDNVVYRMGLASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +++ ++VN+ S+ + P ++SVREKAKKQ RI +LEL+ +WI VD K+E
Sbjct: 120 HKAIMLDGRVVNVPSHTVLPEQVVSVREKAKKQARIGAALELAAQREKPTWIEVDTTKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRLPERSDLSADINEQL 199
>gi|84394604|ref|ZP_00993306.1| 30S ribosomal protein S4 [Vibrio splendidus 12B01]
gi|84374778|gb|EAP91723.1| 30S ribosomal protein S4 [Vibrio splendidus 12B01]
Length = 206
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN K+VN+ S+K+ D++S+REKAK+Q+RI +LE++E +WI VDA KME
Sbjct: 120 HKSVLVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDASKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEHL 199
>gi|262273355|ref|ZP_06051169.1| SSU ribosomal protein S4p (S9e) [Grimontia hollisae CIP 101886]
gi|262222333|gb|EEY73644.1| SSU ribosomal protein S4p (S9e) [Grimontia hollisae CIP 101886]
Length = 206
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D+IS+REKAK Q RI +LE++ +WI VD+ KME
Sbjct: 120 HKAILVNGKVVNVPSFKVTANDVISIREKAKNQARIKAALEIAAQRELPTWIEVDSNKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|209693947|ref|YP_002261875.1| 30S ribosomal protein S4 [Aliivibrio salmonicida LFI1238]
gi|226697795|sp|B6EPU8.1|RS4_ALISL RecName: Full=30S ribosomal protein S4
gi|208007898|emb|CAQ78028.1| 30S ribosomal protein S4 [Aliivibrio salmonicida LFI1238]
Length = 206
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ + AR+KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKDAARIKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN K+VN+ S+K+ D++S+REKAK Q+RI +LE++E +WI VDA KME
Sbjct: 120 HKSILVNGKVVNVPSFKVSANDVVSIREKAKLQSRIKAALEVAEQREKPTWIEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|298500604|ref|ZP_07010408.1| SSU ribosomal protein S4 [Vibrio cholerae MAK 757]
gi|297540773|gb|EFH76830.1| SSU ribosomal protein S4 [Vibrio cholerae MAK 757]
Length = 206
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSRVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D+++VREKAKKQ+RI +LE++E +WI VD ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|86148804|ref|ZP_01067071.1| 30S ribosomal protein S4 [Vibrio sp. MED222]
gi|148982227|ref|ZP_01816653.1| 30S ribosomal protein S4 [Vibrionales bacterium SWAT-3]
gi|218710725|ref|YP_002418346.1| 30S ribosomal protein S4 [Vibrio splendidus LGP32]
gi|407070215|ref|ZP_11101053.1| 30S ribosomal protein S4 [Vibrio cyclitrophicus ZF14]
gi|417949229|ref|ZP_12592367.1| 30S ribosomal protein S4 [Vibrio splendidus ATCC 33789]
gi|254764622|sp|B7VLD3.1|RS4_VIBSL RecName: Full=30S ribosomal protein S4
gi|85833394|gb|EAQ51585.1| 30S ribosomal protein S4 [Vibrio sp. MED222]
gi|145960589|gb|EDK25942.1| 30S ribosomal protein S4 [Vibrionales bacterium SWAT-3]
gi|218323744|emb|CAV20098.1| ribosomal protein S4 [Vibrio splendidus LGP32]
gi|342808623|gb|EGU43772.1| 30S ribosomal protein S4 [Vibrio splendidus ATCC 33789]
Length = 206
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN K+VN+ S+K+ D++S+REKAK+Q+RI +LE++E +WI VDA KME
Sbjct: 120 HKSILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEHL 199
>gi|258625764|ref|ZP_05720643.1| 30S ribosomal protein S4 [Vibrio mimicus VM603]
gi|261211127|ref|ZP_05925416.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC341]
gi|262170491|ref|ZP_06038169.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus MB-451]
gi|262401859|ref|ZP_06078424.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC586]
gi|424809414|ref|ZP_18234795.1| 30S ribosomal protein S4 [Vibrio mimicus SX-4]
gi|449144190|ref|ZP_21775006.1| 30S ribosomal protein S4 [Vibrio mimicus CAIM 602]
gi|258582002|gb|EEW06872.1| 30S ribosomal protein S4 [Vibrio mimicus VM603]
gi|260839628|gb|EEX66239.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC341]
gi|261891567|gb|EEY37553.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus MB-451]
gi|262351831|gb|EEZ00962.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC586]
gi|342323348|gb|EGU19133.1| 30S ribosomal protein S4 [Vibrio mimicus SX-4]
gi|449080126|gb|EMB51044.1| 30S ribosomal protein S4 [Vibrio mimicus CAIM 602]
Length = 206
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D++++REKAKKQ+RI +LE++E +WI VD ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDVNTME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|56480311|ref|NP_709084.2| 30S ribosomal protein S4 [Shigella flexneri 2a str. 301]
gi|56383862|gb|AAN44791.2| 30S ribosomal subunit protein S4 [Shigella flexneri 2a str. 301]
Length = 202
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 152/196 (77%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+V ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVPGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSADINEHL 195
>gi|192359460|ref|YP_001981232.1| 30S ribosomal protein S4 [Cellvibrio japonicus Ueda107]
gi|226697819|sp|B3PK61.1|RS4_CELJU RecName: Full=30S ribosomal protein S4
gi|190685625|gb|ACE83303.1| ribosomal protein S4 [Cellvibrio japonicus Ueda107]
Length = 206
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DLFLKS R+LDSKCK++ PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLSRREGTDLFLKSGARALDSKCKIETAPGQHGQRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR KG TGE +LKLLESR DNVVYRMGF +TRSE+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRGYYKEAARRKGATGENLLKLLESRLDNVVYRMGFGATRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VN+AS+++ GD+++VREKAK Q RI ++L L+ + W+ V+ +K E
Sbjct: 120 HKAISVNGKTVNVASFQVAAGDVVAVREKAKNQLRIQSALNLAGQRSNVEWVDVNTEKKE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R + DIN+ L
Sbjct: 180 GVFKRVPDRVDLPADINENL 199
>gi|336123197|ref|YP_004565245.1| 30S ribosomal protein S4P [Vibrio anguillarum 775]
gi|335340920|gb|AEH32203.1| SSU ribosomal protein S4P [Vibrio anguillarum 775]
Length = 206
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGIRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D++++REKAKKQ+RI +LE++E +WI VD +ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAVNDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDGGQME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|229524553|ref|ZP_04413958.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae bv. albensis
VL426]
gi|229338134|gb|EEO03151.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae bv. albensis
VL426]
Length = 206
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D+++VREKAKKQ+RI +LE++E WI VD ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPPWIEVDVNTME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>gi|388259068|ref|ZP_10136242.1| ribosomal protein S4 [Cellvibrio sp. BR]
gi|387937026|gb|EIK43583.1| ribosomal protein S4 [Cellvibrio sp. BR]
Length = 206
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DLFLKS R+LDSKCK++ PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLSRREGTDLFLKSGARALDSKCKIETAPGQHGQRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILEKQFR Y+ E AR KG +GE +LKLLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGILEKQFRGYYKEAARRKGASGENLLKLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VN+AS+++ GD+++VREKAKKQ R+ N+L L+ + W+ V+++K E
Sbjct: 120 HKAISVNGKTVNVASFQVAAGDVVAVREKAKKQLRVQNALNLAGQRSNVEWVDVNSEKKE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R + DIN+ L
Sbjct: 180 GVFKRIPDRIDLPADINENL 199
>gi|261854973|ref|YP_003262256.1| 30S ribosomal protein S4 [Halothiobacillus neapolitanus c2]
gi|261835442|gb|ACX95209.1| ribosomal protein S4 [Halothiobacillus neapolitanus c2]
Length = 207
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 150/200 (75%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS RS + KC D PGQHG + S+YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVRSHEDKCHHDRAPGQHGAARKQKVSEYGVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QF YF + A+LKG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 61 KLRRIYGVLERQFANYFKKAAQLKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN ++VNIASY++ D+++VRE ++KQ RI +SLE++ SWI+VDA KME
Sbjct: 121 HRAITVNGEVVNIASYQVAANDVVAVRESSRKQQRIKDSLEIAAQRPDVSWISVDAAKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P+R E +IN+ L
Sbjct: 181 GVFKSAPSRDELPAEINESL 200
>gi|254426804|ref|ZP_05040511.1| ribosomal protein S4 [Alcanivorax sp. DG881]
gi|196192973|gb|EDX87932.1| ribosomal protein S4 [Alcanivorax sp. DG881]
Length = 210
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 123/203 (60%), Positives = 152/203 (74%), Gaps = 3/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG---SRTSDYGYQFR 57
MARYIGPK KL RREG DLFLKS R L+SKCK + PGQ SG +R SDYG Q R
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLESKCKAEQAPGQAAGASGRRPARLSDYGVQLR 60
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R YG+LEKQFR Y+ + A KG TGE++L+LLE R DNVVYRMGF STRSEARQ
Sbjct: 61 EKQKVRRTYGVLEKQFRSYYKKAAASKGATGEVLLQLLEGRLDNVVYRMGFGSTRSEARQ 120
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SHRA LVN + VN+ASY++KPGD I+VREK+K Q R+ N++EL++ WI VD K
Sbjct: 121 LVSHRAILVNGQSVNVASYQVKPGDQINVREKSKNQLRVKNAMELAQQRGFMPWIEVDDK 180
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+EG +K++P R + +IN+ L
Sbjct: 181 KLEGTYKAKPERIDLPAEINENL 203
>gi|92112578|ref|YP_572506.1| 30S ribosomal protein S4 [Chromohalobacter salexigens DSM 3043]
gi|122420778|sp|Q1R0F1.1|RS4_CHRSD RecName: Full=30S ribosomal protein S4
gi|91795668|gb|ABE57807.1| SSU ribosomal protein S4P [Chromohalobacter salexigens DSM 3043]
Length = 206
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS + KCK + PG HG+ R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE++L+LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGATGELLLQLLESRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ASY++KPGD++SVREKAK Q RI N+L ++ + +WI VD+KKME
Sbjct: 120 HKAIAVNGRTVNVASYQVKPGDVVSVREKAKNQARIQNALGIAANRGDVAWIDVDSKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R + + DIN+ L
Sbjct: 180 GTFKAVPERGDLSADINENL 199
>gi|119478108|ref|ZP_01618187.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2143]
gi|119448814|gb|EAW30057.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2143]
Length = 206
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS R LDSKCK + PG HG G R SDYG Q REKQ
Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLDSKCKAEAPPGVHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLESR DNVVYRMGF STR+E+RQL++
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRAESRQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ L+N K+VNIASY++K GD +SVREKAK Q R+ ++EL+ WI V+ ME
Sbjct: 120 HKSILINDKVVNIASYQVKAGDKVSVREKAKSQLRVKQAIELAAQRGDAEWIEVNVSNME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K++P+R++ +++IN+ L
Sbjct: 180 GTYKAKPDRADLSSEINESL 199
>gi|393763751|ref|ZP_10352366.1| 30S ribosomal protein S4 [Alishewanella agri BL06]
gi|392605367|gb|EIW88263.1| 30S ribosomal protein S4 [Alishewanella agri BL06]
Length = 206
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKC L PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCNLTTAPGQHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L LLESR DNVVYRMG +STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLALLESRLDNVVYRMGLASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +++ ++VN+ S+ + P +++VREKAKKQ RI +LEL+ +WI VD K+E
Sbjct: 120 HKAIMLDGRVVNVPSHTVLPEQVVAVREKAKKQARIGAALELAAQREKPTWIEVDMTKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + DIN+ L
Sbjct: 180 GVFKRLPERSDLSADINEQL 199
>gi|221133739|ref|ZP_03560044.1| 30S ribosomal protein S4 [Glaciecola sp. HTCC2999]
Length = 206
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCKLD PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLDTAPGQHGARRG-RLSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN ++VNI S+K+ +SVREKAKKQ RI +++EL++ +WI VD K+
Sbjct: 120 HKAICVNGQVVNIPSFKVSAETNVSVREKAKKQARIISAVELADQREKPTWIEVDGAKLS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GDFKRLPERSDLSAEINEQL 199
>gi|89076300|ref|ZP_01162641.1| 30S ribosomal protein S4 [Photobacterium sp. SKA34]
gi|90581702|ref|ZP_01237490.1| 30S ribosomal protein S4 [Photobacterium angustum S14]
gi|330447013|ref|ZP_08310663.1| ribosomal protein S4 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|89048004|gb|EAR53593.1| 30S ribosomal protein S4 [Photobacterium sp. SKA34]
gi|90437117|gb|EAS62320.1| 30S ribosomal protein S4 [Vibrio angustum S14]
gi|328491204|dbj|GAA05160.1| ribosomal protein S4 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 206
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ AR+KG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRTYGVLEKQFRNYYKTAARIKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VN+ S+K+ D++S+REKAK Q RI +LE++ +W+ VD+ KME
Sbjct: 120 HKAILVNGQVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDSSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|444378658|ref|ZP_21177853.1| SSU ribosomal protein S4p (S9e) [Enterovibrio sp. AK16]
gi|443677274|gb|ELT83960.1| SSU ribosomal protein S4p (S9e) [Enterovibrio sp. AK16]
Length = 206
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARIKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK Q RI +LE++ +WI VD+ KME
Sbjct: 120 HKAILVNGKVVNVPSFKVTANDVVSIREKAKNQARIKAALEIAAQRELPTWIEVDSNKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|385786302|ref|YP_005817411.1| 30S ribosomal protein S4 [Erwinia sp. Ejp617]
gi|310765574|gb|ADP10524.1| 30S ribosomal protein S4 [Erwinia sp. Ejp617]
Length = 202
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 117/196 (59%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH++
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKSI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++V+IASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEGVFK
Sbjct: 120 MVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKMEGVFK 179
Query: 185 SEPNRSEFANDINDLL 200
P R++ + DIN+ L
Sbjct: 180 RIPERTDLSADINEHL 195
>gi|134302562|ref|YP_001122532.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752446|ref|ZP_16189471.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
AS_713]
gi|421754312|ref|ZP_16191287.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
831]
gi|421758043|ref|ZP_16194903.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
80700103]
gi|421759874|ref|ZP_16196698.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
70102010]
gi|424675196|ref|ZP_18112105.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
70001275]
gi|152060949|sp|A4IZR0.1|RS4_FRATW RecName: Full=30S ribosomal protein S4
gi|134050339|gb|ABO47410.1| ribosomal protein S4 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409084836|gb|EKM84997.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
831]
gi|409085030|gb|EKM85183.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
AS_713]
gi|409089791|gb|EKM89823.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
70102010]
gi|409090613|gb|EKM90626.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
80700103]
gi|417434145|gb|EKT89113.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
70001275]
Length = 206
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS ++ D KCK++ PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE QF++Y++E +R KG TG +L+LLESR DNVVYRMGF++TR+EARQL+
Sbjct: 60 KVRRMYGILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLVV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ +VN N+ S ++K GD+++VREKAKKQ RI N++EL++H SWI V+ +E
Sbjct: 120 HKGIMVNGHTCNVPSAQVKAGDVVTVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G KS P+RSE + DIN+ L
Sbjct: 180 GTMKSSPDRSELSADINEQL 199
>gi|49079326|gb|AAT49880.1| PA4239, partial [synthetic construct]
Length = 207
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKCK + PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E +R KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY++K GD+++VREK+K Q RIA +LEL W+ VD K
Sbjct: 120 HKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKKA 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ + DIN+ L
Sbjct: 180 GTFKSAPARSDLSADINENL 199
>gi|15599435|ref|NP_252929.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO1]
gi|107103755|ref|ZP_01367673.1| hypothetical protein PaerPA_01004826 [Pseudomonas aeruginosa PACS2]
gi|116052274|ref|YP_788880.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889432|ref|YP_002438296.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa LESB58]
gi|254237103|ref|ZP_04930426.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa C3719]
gi|254242910|ref|ZP_04936232.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 2192]
gi|296387204|ref|ZP_06876703.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAb1]
gi|313111393|ref|ZP_07797198.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 39016]
gi|355652590|ref|ZP_09056850.1| 30S ribosomal protein S4 [Pseudomonas sp. 2_1_26]
gi|386056760|ref|YP_005973282.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa M18]
gi|386068386|ref|YP_005983690.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa NCGM2.S1]
gi|392982103|ref|YP_006480690.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa DK2]
gi|416860436|ref|ZP_11914275.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 138244]
gi|416877946|ref|ZP_11920077.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 152504]
gi|418588006|ref|ZP_13152024.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589206|ref|ZP_13153134.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa MPAO1/P2]
gi|419756664|ref|ZP_14283009.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PADK2_CF510]
gi|420137302|ref|ZP_14645292.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa CIG1]
gi|421151783|ref|ZP_15611385.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa ATCC 14886]
gi|421157770|ref|ZP_15617115.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa ATCC 25324]
gi|421165632|ref|ZP_15623954.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa ATCC 700888]
gi|421172476|ref|ZP_15630246.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa CI27]
gi|421178609|ref|ZP_15636219.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa E2]
gi|421518789|ref|ZP_15965463.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO579]
gi|424938897|ref|ZP_18354660.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa NCMG1179]
gi|451982920|ref|ZP_21931218.1| SSU ribosomal protein S4p (S9e) [Pseudomonas aeruginosa 18A]
gi|12230936|sp|O52759.2|RS4_PSEAE RecName: Full=30S ribosomal protein S4
gi|122261423|sp|Q02T56.1|RS4_PSEAB RecName: Full=30S ribosomal protein S4
gi|226699107|sp|B7V667.1|RS4_PSEA8 RecName: Full=30S ribosomal protein S4
gi|9950456|gb|AAG07627.1|AE004841_5 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO1]
gi|115587495|gb|ABJ13510.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169034|gb|EAZ54545.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa C3719]
gi|126196288|gb|EAZ60351.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 2192]
gi|218769655|emb|CAW25415.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa LESB58]
gi|310883700|gb|EFQ42294.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 39016]
gi|334837568|gb|EGM16325.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 138244]
gi|334838965|gb|EGM17665.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 152504]
gi|346055343|dbj|GAA15226.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa NCMG1179]
gi|347303066|gb|AEO73180.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa M18]
gi|348036945|dbj|BAK92305.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa NCGM2.S1]
gi|354823928|gb|EHF08191.1| 30S ribosomal protein S4 [Pseudomonas sp. 2_1_26]
gi|375041245|gb|EHS33955.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051968|gb|EHS44429.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa MPAO1/P2]
gi|384396419|gb|EIE42837.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PADK2_CF510]
gi|392317608|gb|AFM62988.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa DK2]
gi|403249948|gb|EJY63414.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa CIG1]
gi|404348271|gb|EJZ74620.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO579]
gi|404526655|gb|EKA36857.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa ATCC 14886]
gi|404537742|gb|EKA47325.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa CI27]
gi|404541194|gb|EKA50562.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa ATCC 700888]
gi|404548213|gb|EKA57177.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa E2]
gi|404550295|gb|EKA59056.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa ATCC 25324]
gi|451759389|emb|CCQ83741.1| SSU ribosomal protein S4p (S9e) [Pseudomonas aeruginosa 18A]
gi|453042418|gb|EME90162.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PA21_ST175]
Length = 206
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKCK + PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E +R KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY++K GD+++VREK+K Q RIA +LEL W+ VD K
Sbjct: 120 HKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKKA 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ + DIN+ L
Sbjct: 180 GTFKSAPARSDLSADINENL 199
>gi|400406264|ref|YP_006589012.1| ribosomal protein S4, bacterial/organelle type [secondary
endosymbiont of Heteropsylla cubana]
gi|400364517|gb|AFP85584.1| ribosomal protein S4, bacterial/organelle type [secondary
endosymbiont of Heteropsylla cubana]
Length = 206
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK K+ RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKITRREGTDLFLKSGVRTIDSKCKIEQPPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEAARIKGNTGEKLLQLLEGRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +V+IASY++ P DII +REKAKKQ+R+ SLEL+E WI VD+ KME
Sbjct: 120 HKSIMVNNHVVSIASYQVMPNDIIKIREKAKKQSRVYASLELAEQREKPIWIEVDSIKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R + + +IN+ L
Sbjct: 180 GVFKRIPERVDLSAEINEHL 199
>gi|90414980|ref|ZP_01222942.1| 30S ribosomal protein S4 [Photobacterium profundum 3TCK]
gi|161936335|ref|YP_128585.2| 30S ribosomal protein S4 [Photobacterium profundum SS9]
gi|152031675|sp|Q6LV92.2|RS4_PHOPR RecName: Full=30S ribosomal protein S4
gi|90323919|gb|EAS40519.1| 30S ribosomal protein S4 [Photobacterium profundum 3TCK]
Length = 206
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRTYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN +VN+ S+K+ D++S+REKAK Q RI +LE++ +W+ VD K+E
Sbjct: 120 HKAILVNGTVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNSKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|56707502|ref|YP_169398.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|89255694|ref|YP_513055.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
LVS]
gi|110669973|ref|YP_666530.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
FSC198]
gi|118496876|ref|YP_897926.1| 30S ribosomal protein S4 [Francisella novicida U112]
gi|156501642|ref|YP_001427707.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|194324098|ref|ZP_03057872.1| ribosomal protein S4 [Francisella novicida FTE]
gi|208780324|ref|ZP_03247665.1| ribosomal protein S4 [Francisella novicida FTG]
gi|254367075|ref|ZP_04983110.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
257]
gi|254368645|ref|ZP_04984660.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
FSC022]
gi|254370809|ref|ZP_04986814.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
FSC033]
gi|254372233|ref|ZP_04987724.1| 30S ribosomal protein S4 [Francisella tularensis subsp. novicida
GA99-3549]
gi|254373715|ref|ZP_04989198.1| 30S ribosomal protein S4 [Francisella novicida GA99-3548]
gi|254874322|ref|ZP_05247032.1| 30S ribosomal protein S4 rpsD [Francisella tularensis subsp.
tularensis MA00-2987]
gi|290953189|ref|ZP_06557810.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
URFT1]
gi|379716691|ref|YP_005305027.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
TIGB03]
gi|379716769|ref|YP_005305105.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725373|ref|YP_005317559.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
TI0902]
gi|385792199|ref|YP_005825175.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|385794111|ref|YP_005830517.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
NE061598]
gi|387823832|ref|YP_005823303.1| 30S ribosomal protein S4 [Francisella cf. novicida 3523]
gi|421754977|ref|ZP_16191935.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
80700075]
gi|422938190|ref|YP_007011337.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
FSC200]
gi|423050004|ref|YP_007008438.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
F92]
gi|61215374|sp|Q5NHU4.1|RS4_FRATT RecName: Full=30S ribosomal protein S4
gi|122501251|sp|Q2A5E6.1|RS4_FRATH RecName: Full=30S ribosomal protein S4
gi|123359595|sp|Q14J96.1|RS4_FRAT1 RecName: Full=30S ribosomal protein S4
gi|152060948|sp|A0Q4K7.1|RS4_FRATN RecName: Full=30S ribosomal protein S4
gi|171769925|sp|A7N9U8.1|RS4_FRATF RecName: Full=30S ribosomal protein S4
gi|54113157|gb|AAV29212.1| NT02FT0049 [synthetic construct]
gi|56603994|emb|CAG44982.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|89143525|emb|CAJ78701.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
LVS]
gi|110320306|emb|CAL08365.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
FSC198]
gi|118422782|gb|ABK89172.1| 30S ribosomal protein S4 [Francisella novicida U112]
gi|134252900|gb|EBA51994.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
257]
gi|151569052|gb|EDN34706.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
FSC033]
gi|151569962|gb|EDN35616.1| 30S ribosomal protein S4 [Francisella novicida GA99-3549]
gi|151571436|gb|EDN37090.1| 30S ribosomal protein S4 [Francisella novicida GA99-3548]
gi|156252245|gb|ABU60751.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157121553|gb|EDO65738.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
FSC022]
gi|194321545|gb|EDX19029.1| ribosomal protein S4 [Francisella tularensis subsp. novicida FTE]
gi|208743692|gb|EDZ89995.1| ribosomal protein S4 [Francisella novicida FTG]
gi|254840321|gb|EET18757.1| 30S ribosomal protein S4 rpsD [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158646|gb|ADA78037.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
NE061598]
gi|328675431|gb|AEB28106.1| SSU ribosomal protein S4p (S9e) [Francisella cf. novicida 3523]
gi|328676345|gb|AEB27215.1| SSU ribosomal protein S4p (S9e) [Francisella cf. novicida Fx1]
gi|377826822|gb|AFB80070.1| SSU ribosomal protein S4p (S9e) [Francisella tularensis subsp.
tularensis TI0902]
gi|377828368|gb|AFB78447.1| SSU ribosomal protein S4p (S9e) [Francisella tularensis subsp.
tularensis TIGB03]
gi|377828446|gb|AFB78525.1| SSU ribosomal protein S4p (S9e) [Francisella tularensis subsp.
tularensis TIGB03]
gi|407293341|gb|AFT92247.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
FSC200]
gi|409089521|gb|EKM89561.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis
80700075]
gi|421950726|gb|AFX69975.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
F92]
Length = 206
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS ++ D KCK++ PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE QF++Y++E +R KG TG +L+LLESR DNVVYRMGF++TR+EARQL+
Sbjct: 60 KVRRMYGILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLVV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ +VN N+ S ++K GD+++VREKAKKQ RI N++EL++H SWI V+ +E
Sbjct: 120 HKGIMVNGHTCNVPSAQVKAGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G KS P+RSE + DIN+ L
Sbjct: 180 GTMKSSPDRSELSADINEQL 199
>gi|359782250|ref|ZP_09285472.1| 30S ribosomal protein S4 [Pseudomonas psychrotolerans L19]
gi|359370043|gb|EHK70612.1| 30S ribosomal protein S4 [Pseudomonas psychrotolerans L19]
Length = 206
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKCKL+ PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKLETVPGQHGQRRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QF Y+ E AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRMYGVLERQFAGYYQEAARRKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VNI SY++K GD+++VREKAK Q RIA +LEL W+ V +K E
Sbjct: 120 HKSITVNGQTVNIPSYQVKVGDVVAVREKAKNQLRIAQALELCGQRGRVEWVEVSTEKKE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R + + DIN+ L
Sbjct: 180 GTFKSVPARGDLSADINENL 199
>gi|419182689|ref|ZP_13726298.1| ribosomal protein S4 [Escherichia coli DEC7C]
gi|378021461|gb|EHV84163.1| ribosomal protein S4 [Escherichia coli DEC7C]
Length = 202
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 152/196 (77%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ GQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQALGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG FK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSADINEHL 195
>gi|410664354|ref|YP_006916725.1| 30S ribosomal protein S4 [Simiduia agarivorans SA1 = DSM 21679]
gi|409026711|gb|AFU98995.1| 30S ribosomal protein S4 [Simiduia agarivorans SA1 = DSM 21679]
Length = 206
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R LDSKCK + PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGARPLDSKCKAETAPGMHGQRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILEKQFR Y+ E AR KG TGE +LKLLE+R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGILEKQFRGYYKEAARRKGATGENLLKLLETRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI S+++ GD+++VREKAK Q RI N+L L+ W+ V A K E
Sbjct: 120 HKAILVNGKSVNIPSFQVSEGDVVAVREKAKNQLRIQNALTLAAQRADVEWVDVSADKKE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + DIN+ L
Sbjct: 180 GTFKRVPDRIDLPADINENL 199
>gi|422911391|ref|ZP_16946013.1| ribosomal protein S4 [Vibrio cholerae HE-09]
gi|424661060|ref|ZP_18098306.1| ribosomal protein S4 [Vibrio cholerae HE-16]
gi|341631361|gb|EGS56255.1| ribosomal protein S4 [Vibrio cholerae HE-09]
gi|408049636|gb|EKG84827.1| ribosomal protein S4 [Vibrio cholerae HE-16]
Length = 206
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D+++VREKAKKQ+RI +LE++E +WI VD ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEQL 199
>gi|238788888|ref|ZP_04632678.1| 30S ribosomal protein S4 [Yersinia frederiksenii ATCC 33641]
gi|238792959|ref|ZP_04636589.1| 30S ribosomal protein S4 [Yersinia intermedia ATCC 29909]
gi|420549959|ref|ZP_15047605.1| ribosomal protein S4 [Yersinia pestis PY-02]
gi|420555415|ref|ZP_15052460.1| ribosomal protein S4 [Yersinia pestis PY-03]
gi|420561062|ref|ZP_15057373.1| ribosomal protein S4 [Yersinia pestis PY-04]
gi|420566097|ref|ZP_15061914.1| ribosomal protein S4 [Yersinia pestis PY-05]
gi|420598519|ref|ZP_15091215.1| ribosomal protein S4 [Yersinia pestis PY-11]
gi|420609413|ref|ZP_15101014.1| ribosomal protein S4 [Yersinia pestis PY-13]
gi|420614668|ref|ZP_15105703.1| ribosomal protein S4 [Yersinia pestis PY-14]
gi|420620112|ref|ZP_15110444.1| ribosomal protein S4 [Yersinia pestis PY-15]
gi|420630330|ref|ZP_15119713.1| ribosomal protein S4 [Yersinia pestis PY-19]
gi|420646216|ref|ZP_15134079.1| ribosomal protein S4 [Yersinia pestis PY-32]
gi|420651868|ref|ZP_15139140.1| ribosomal protein S4 [Yersinia pestis PY-34]
gi|420657283|ref|ZP_15144029.1| ribosomal protein S4 [Yersinia pestis PY-36]
gi|420683678|ref|ZP_15167864.1| ribosomal protein S4 [Yersinia pestis PY-48]
gi|420688831|ref|ZP_15172443.1| ribosomal protein S4 [Yersinia pestis PY-52]
gi|420694644|ref|ZP_15177533.1| ribosomal protein S4 [Yersinia pestis PY-53]
gi|420699890|ref|ZP_15182132.1| ribosomal protein S4 [Yersinia pestis PY-54]
gi|420706080|ref|ZP_15187016.1| ribosomal protein S4 [Yersinia pestis PY-55]
gi|420716717|ref|ZP_15196566.1| ribosomal protein S4 [Yersinia pestis PY-58]
gi|420722368|ref|ZP_15201373.1| ribosomal protein S4 [Yersinia pestis PY-59]
gi|420733120|ref|ZP_15210984.1| ribosomal protein S4 [Yersinia pestis PY-61]
gi|420749706|ref|ZP_15225549.1| ribosomal protein S4 [Yersinia pestis PY-65]
gi|420760871|ref|ZP_15234930.1| ribosomal protein S4 [Yersinia pestis PY-71]
gi|420766037|ref|ZP_15239610.1| ribosomal protein S4 [Yersinia pestis PY-72]
gi|420776422|ref|ZP_15248946.1| ribosomal protein S4 [Yersinia pestis PY-88]
gi|420803301|ref|ZP_15272877.1| ribosomal protein S4 [Yersinia pestis PY-93]
gi|420808460|ref|ZP_15277548.1| ribosomal protein S4 [Yersinia pestis PY-94]
gi|420824494|ref|ZP_15291954.1| ribosomal protein S4 [Yersinia pestis PY-98]
gi|420835127|ref|ZP_15301550.1| ribosomal protein S4 [Yersinia pestis PY-100]
gi|420840253|ref|ZP_15306194.1| ribosomal protein S4 [Yersinia pestis PY-101]
gi|420851188|ref|ZP_15316038.1| ribosomal protein S4 [Yersinia pestis PY-103]
gi|420856793|ref|ZP_15320748.1| ribosomal protein S4 [Yersinia pestis PY-113]
gi|238722915|gb|EEQ14565.1| 30S ribosomal protein S4 [Yersinia frederiksenii ATCC 33641]
gi|238727813|gb|EEQ19337.1| 30S ribosomal protein S4 [Yersinia intermedia ATCC 29909]
gi|391434049|gb|EIQ95293.1| ribosomal protein S4 [Yersinia pestis PY-02]
gi|391436847|gb|EIQ97767.1| ribosomal protein S4 [Yersinia pestis PY-03]
gi|391449117|gb|EIR08866.1| ribosomal protein S4 [Yersinia pestis PY-04]
gi|391449698|gb|EIR09396.1| ribosomal protein S4 [Yersinia pestis PY-05]
gi|391483408|gb|EIR39767.1| ribosomal protein S4 [Yersinia pestis PY-11]
gi|391497361|gb|EIR52228.1| ribosomal protein S4 [Yersinia pestis PY-13]
gi|391498336|gb|EIR53117.1| ribosomal protein S4 [Yersinia pestis PY-15]
gi|391501864|gb|EIR56224.1| ribosomal protein S4 [Yersinia pestis PY-14]
gi|391514588|gb|EIR67680.1| ribosomal protein S4 [Yersinia pestis PY-19]
gi|391531483|gb|EIR82975.1| ribosomal protein S4 [Yersinia pestis PY-34]
gi|391532702|gb|EIR84059.1| ribosomal protein S4 [Yersinia pestis PY-32]
gi|391545640|gb|EIR95706.1| ribosomal protein S4 [Yersinia pestis PY-36]
gi|391564964|gb|EIS13121.1| ribosomal protein S4 [Yersinia pestis PY-48]
gi|391577091|gb|EIS23560.1| ribosomal protein S4 [Yersinia pestis PY-52]
gi|391577920|gb|EIS24261.1| ribosomal protein S4 [Yersinia pestis PY-53]
gi|391589073|gb|EIS34014.1| ribosomal protein S4 [Yersinia pestis PY-55]
gi|391592690|gb|EIS37079.1| ribosomal protein S4 [Yersinia pestis PY-54]
gi|391608000|gb|EIS50538.1| ribosomal protein S4 [Yersinia pestis PY-58]
gi|391608693|gb|EIS51158.1| ribosomal protein S4 [Yersinia pestis PY-59]
gi|391620651|gb|EIS61784.1| ribosomal protein S4 [Yersinia pestis PY-61]
gi|391632098|gb|EIS71663.1| ribosomal protein S4 [Yersinia pestis PY-65]
gi|391643377|gb|EIS81554.1| ribosomal protein S4 [Yersinia pestis PY-71]
gi|391646136|gb|EIS83927.1| ribosomal protein S4 [Yersinia pestis PY-72]
gi|391662902|gb|EIS98797.1| ribosomal protein S4 [Yersinia pestis PY-88]
gi|391687115|gb|EIT20461.1| ribosomal protein S4 [Yersinia pestis PY-93]
gi|391689976|gb|EIT23052.1| ribosomal protein S4 [Yersinia pestis PY-94]
gi|391705037|gb|EIT36637.1| ribosomal protein S4 [Yersinia pestis PY-98]
gi|391720690|gb|EIT50690.1| ribosomal protein S4 [Yersinia pestis PY-100]
gi|391721247|gb|EIT51201.1| ribosomal protein S4 [Yersinia pestis PY-101]
gi|391734428|gb|EIT62689.1| ribosomal protein S4 [Yersinia pestis PY-103]
gi|391737525|gb|EIT65402.1| ribosomal protein S4 [Yersinia pestis PY-113]
Length = 202
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/196 (59%), Positives = 153/196 (78%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E+RQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEGVFK
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAVKMEGVFK 179
Query: 185 SEPNRSEFANDINDLL 200
P R++ + DIN+ L
Sbjct: 180 RIPERTDLSADINEHL 195
>gi|115314194|ref|YP_762917.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica
OSU18]
gi|122325768|sp|Q0BNQ4.1|RS4_FRATO RecName: Full=30S ribosomal protein S4
gi|115129093|gb|ABI82280.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica
OSU18]
Length = 206
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS ++ D KCK++ PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE QF++Y++E +R KG TG +L+LLESR DNVVYRMGF++TR+EARQL+
Sbjct: 60 KVRRMYGILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLVV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ +VN N+ S ++K GD+++VREKAKKQ RI N++EL++H SWI V+ +E
Sbjct: 120 HKGIMVNGHTCNVPSAQVKVGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G KS P+RSE + DIN+ L
Sbjct: 180 GTMKSSPDRSELSADINEQL 199
>gi|441505662|ref|ZP_20987643.1| SSU ribosomal protein S4p (S9e) [Photobacterium sp. AK15]
gi|441426653|gb|ELR64134.1| SSU ribosomal protein S4p (S9e) [Photobacterium sp. AK15]
Length = 206
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRTYGVLEKQFRNYYKEAARIKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VN+ S+K+ D++S+REKAK Q RI +LE++ +W+ VD KME
Sbjct: 120 HKAILVNGQVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDTNKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRLPERSDLSADINEHL 199
>gi|334143244|ref|YP_004536400.1| 30S ribosomal protein S4 [Thioalkalimicrobium cyclicum ALM1]
gi|333964155|gb|AEG30921.1| ribosomal protein S4 [Thioalkalimicrobium cyclicum ALM1]
Length = 206
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 155/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS RS+DSKCK+D PGQHG +R ++YG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGARSIDSKCKIDQAPGQHG-ARRARVTEYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEK+FR Y+ E R KG TG +L++LESR DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKKFRLYYKEADRRKGSTGVNLLQILESRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI S+++ GD+++VREK++ QTRIA +LELS SW+ VDAK +
Sbjct: 120 HKAIQVNGQTVNIPSFEVSAGDVVAVREKSRNQTRIAQALELSAKMGQASWLEVDAKAFQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RS+ ++DI++ L
Sbjct: 180 GTFKSVPDRSDLSSDISENL 199
>gi|381395961|ref|ZP_09921653.1| small subunit ribosomal protein S4 [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328141|dbj|GAB56786.1| small subunit ribosomal protein S4 [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 206
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDQPPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E AR TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARRASNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN K+VNI S+ +K D+++VREKAKKQ RI +LEL++ W+ VD KME
Sbjct: 120 HKAIVVNGKVVNIPSFTVKAEDVVAVREKAKKQARIVAALELADQREKPVWLEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ + +IN+ L
Sbjct: 180 GTFKRIPERTDLSAEINEQL 199
>gi|32034695|ref|ZP_00134833.1| COG0522: Ribosomal protein S4 and related proteins [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209247|ref|YP_001054472.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165977220|ref|YP_001652813.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|190151138|ref|YP_001969663.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|303250036|ref|ZP_07336238.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|303253210|ref|ZP_07339359.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|307246713|ref|ZP_07528783.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|307251082|ref|ZP_07533006.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|307253468|ref|ZP_07535339.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|307255698|ref|ZP_07537502.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|307257882|ref|ZP_07539638.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|307260150|ref|ZP_07541860.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307264487|ref|ZP_07546072.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|322515611|ref|ZP_08068590.1| 30S ribosomal protein S4 [Actinobacillus ureae ATCC 25976]
gi|407693275|ref|YP_006818064.1| 30S ribosomal protein S4 [Actinobacillus suis H91-0380]
gi|152060927|sp|A3N381.1|RS4_ACTP2 RecName: Full=30S ribosomal protein S4
gi|226697792|sp|B3GZ35.1|RS4_ACTP7 RecName: Full=30S ribosomal protein S4
gi|226697793|sp|B0BSV5.1|RS4_ACTPJ RecName: Full=30S ribosomal protein S4
gi|126098039|gb|ABN74867.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165877321|gb|ABY70369.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|189916269|gb|ACE62521.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|302647892|gb|EFL78099.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|302651099|gb|EFL81253.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306852413|gb|EFM84648.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|306856912|gb|EFM89044.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|306859147|gb|EFM91189.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306861375|gb|EFM93365.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|306863612|gb|EFM95539.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306865796|gb|EFM97674.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306870184|gb|EFN01943.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|322118321|gb|EFX90596.1| 30S ribosomal protein S4 [Actinobacillus ureae ATCC 25976]
gi|407389332|gb|AFU19825.1| 30S ribosomal protein S4 [Actinobacillus suis H91-0380]
Length = 208
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/202 (60%), Positives = 154/202 (76%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK--LDLRPGQHGRISGSRTSDYGYQFRE 58
MARY+GPK KL RREG DLFLKS R+++SKC+ LD+ PGQHG R SDYG Q RE
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL
Sbjct: 60 KQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SH++ +VN ++VNI SY++ D+++VREK+KKQ RI SLEL+ +W+ VDA K
Sbjct: 120 VSHKSIVVNGRVVNIPSYQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDATK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
MEGVFK P RS+ + DIN+ L
Sbjct: 180 MEGVFKRTPERSDLSADINEHL 201
>gi|187932119|ref|YP_001892104.1| 30S ribosomal protein S4 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|226699067|sp|B2SDW1.1|RS4_FRATM RecName: Full=30S ribosomal protein S4
gi|187713028|gb|ACD31325.1| 30S ribosomal protein S4 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 206
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS ++ D KCK++ PGQHG +R SDYG Q RE+Q
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLRERQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE QF++Y++E +R KG TG +L+LLESR DNVVYRMGF++TR+EARQL+
Sbjct: 60 KVRRMYGILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLVV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ +VN N+ S ++K GD+++VREKAKKQ RI N++EL++H SWI V+ +E
Sbjct: 120 HKGIMVNGHTCNVPSAQVKAGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G KS P+RSE + DIN+ L
Sbjct: 180 GTMKSSPDRSELSADINEQL 199
>gi|144143|gb|AAC05398.1| ribosomal protein S4 [Buchnera aphidicola]
gi|448400|prf||1917188A ribosomal protein S4
Length = 206
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS RS+DSKCKL+ PGQHG + R SDY YQ REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGFRSIDSKCKLEHPPGQHG-VRKPRLSDYAYQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ + +R KG TGE +L+LLE R DNVVYRMGF TRSE+RQLIS
Sbjct: 60 KVRRLYGVLERQFRIYYKKASRSKGNTGENLLQLLERRLDNVVYRMGFGCTRSESRQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN IVNIASY+I P D ISVR+K+K Q+RI +LEL+E WI VD KME
Sbjct: 120 HKSIKVNNNIVNIASYQISPNDRISVRDKSKNQSRIKAALELTEQREKLMWIEVDVTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P RS+ + +IN+ L
Sbjct: 180 GIFKRFPERSDLSAEINEHL 199
>gi|88812733|ref|ZP_01127979.1| 30S ribosomal protein S4 [Nitrococcus mobilis Nb-231]
gi|88789971|gb|EAR21092.1| 30S ribosomal protein S4 [Nitrococcus mobilis Nb-231]
Length = 206
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RREG DLFLKS R LD+KCKLD PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYTGPTCKLARREGTDLFLKSRVRPLDNKCKLDTPPGQHGQRRG-RISDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LE+QFR+Y+ E R KG TGE +L+LLESR DN VYRMGF STR+EARQL++
Sbjct: 60 KVRRTYGVLERQFRKYYKEADRRKGNTGETLLQLLESRLDNTVYRMGFGSTRAEARQLVN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA LVN ++ NI+S + PGD++SV+EKAKKQ R+ +LE+++ +W+ VD K+ E
Sbjct: 120 HRAILVNGRVSNISSRILNPGDLVSVKEKAKKQLRVQAALEMAQQIGLPAWVEVDTKQFE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+RS+ + DIN+ L
Sbjct: 180 GTFKRMPDRSDLSADINEHL 199
>gi|307543849|ref|YP_003896328.1| 30S ribosomal protein S4 [Halomonas elongata DSM 2581]
gi|307215873|emb|CBV41143.1| 30S ribosomal protein S4 [Halomonas elongata DSM 2581]
Length = 206
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS + KCK + PG HG+ R S+YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRISEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE++L+LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGATGELLLQLLESRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ASY++KPGD++SVREKAK Q RI N+L ++ + +W+ DAKKME
Sbjct: 120 HKAIAVNGRTVNVASYQVKPGDVVSVREKAKNQARIQNALGIAANRGDVAWVETDAKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P R + + DIN+ L
Sbjct: 180 GTFKALPERGDLSADINENL 199
>gi|91791563|ref|YP_561214.1| 30S ribosomal protein S4 [Shewanella denitrificans OS217]
gi|123166579|sp|Q12ST5.1|RS4_SHEDO RecName: Full=30S ribosomal protein S4
gi|91713565|gb|ABE53491.1| SSU ribosomal protein S4P [Shewanella denitrificans OS217]
Length = 206
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKPRLSEYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN ++VNI S+K+ D++S+REK++ Q RI SLE++ +W+ VD KME
Sbjct: 120 HKTVLVNGRVVNIPSFKVSANDVVSIREKSRTQARIKASLEVAAQREKPTWVEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRLPERSDLSADINEQL 199
>gi|33152930|ref|NP_874283.1| 30S ribosomal protein S4 [Haemophilus ducreyi 35000HP]
gi|41017830|sp|Q7VKF7.1|RS4_HAEDU RecName: Full=30S ribosomal protein S4
gi|33149155|gb|AAP96672.1| 30S ribosomal protein S4 [Haemophilus ducreyi 35000HP]
Length = 208
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/202 (60%), Positives = 154/202 (76%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK--LDLRPGQHGRISGSRTSDYGYQFRE 58
MARY+GPK KL RREG DLFLKS R+++SKC+ LD+ PGQHG R SDYG Q RE
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL
Sbjct: 60 KQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SH++ +VN ++VNI SY++ D+++VREK+KKQ RI SLEL+ +W+ VDA K
Sbjct: 120 VSHKSIVVNGRVVNIPSYQVSVDDVVTVREKSKKQARIKASLELASQREKPTWLEVDAVK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
MEGVFK P RS+ + DIN+ L
Sbjct: 180 MEGVFKRTPERSDLSADINEHL 201
>gi|269959712|ref|ZP_06174092.1| 30S ribosomal protein S4 [Vibrio harveyi 1DA3]
gi|269835635|gb|EEZ89714.1| 30S ribosomal protein S4 [Vibrio harveyi 1DA3]
Length = 202
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 149/196 (76%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 MYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
LVN K+VN+ S+K+ D++S+REKAK+Q RI +LE++E +WI VD KMEG FK
Sbjct: 120 LVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
P RS+ + DIN+ L
Sbjct: 180 RMPERSDLSADINEQL 195
>gi|87122791|ref|ZP_01078664.1| 30S ribosomal protein S4 [Marinomonas sp. MED121]
gi|86161956|gb|EAQ63248.1| 30S ribosomal protein S4 [Marinomonas sp. MED121]
Length = 206
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+L+SKCK + PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLSRREGTDLQLKSGSRALESKCKAETVPGVHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLESR DNVVYR GF +TR+E+RQL++
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARGKGATGENLLQLLESRLDNVVYRAGFGATRAESRQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ VN VNIASY++K GD++SVREKAKKQ RI N++ELS++ T W+ DA K+E
Sbjct: 120 HKGIQVNGATVNIASYQVKAGDVVSVREKAKKQLRIQNAIELSKNRTSTHWVETDATKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
VFK+ P RS+ + +IN+ L
Sbjct: 180 AVFKAAPERSDLSAEINENL 199
>gi|294142909|ref|YP_003558887.1| 30S ribosomal protein S4 [Shewanella violacea DSS12]
gi|293329378|dbj|BAJ04109.1| ribosomal protein S4 [Shewanella violacea DSS12]
Length = 206
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG +R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKTRLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN +VNI S+K+ D+IS+REK+KKQ RI+ SLE++ +W+ VD KME
Sbjct: 120 HKSILVNGSVVNIPSFKVSASDVISIREKSKKQARISASLEVASQREKPTWVEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRLPERSDLSAEINEQL 199
>gi|152998247|ref|YP_001343082.1| 30S ribosomal protein S4 [Marinomonas sp. MWYL1]
gi|189045385|sp|A6W368.1|RS4_MARMS RecName: Full=30S ribosomal protein S4
gi|150839171|gb|ABR73147.1| ribosomal protein S4 [Marinomonas sp. MWYL1]
Length = 206
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+L+SKCK++ PG HG G R S+YG Q REKQ
Sbjct: 1 MARYIGPTCKLSRREGTDLQLKSGSRALESKCKVETVPGVHGARRG-RLSEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILEKQFR Y+ ARLKG TGE +L+LLESR DNVVYR GF STR+EARQL+
Sbjct: 60 KVRRMYGILEKQFRNYYKSAARLKGATGENLLQLLESRLDNVVYRAGFGSTRAEARQLVG 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN VNI SY++K GD++S+REKAKKQ R+ ++LELS+ P WI VD+ K+E
Sbjct: 120 HKGILVNGATVNIPSYQVKAGDVVSIREKAKKQLRVQSALELSKGRAPIHWIEVDSTKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
+K+ P R++ + +IN+ L
Sbjct: 180 ATYKALPERADLSAEINENL 199
>gi|94676532|ref|YP_588800.1| 30S ribosomal protein S4 [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|152060936|sp|Q1LTB4.1|RS4_BAUCH RecName: Full=30S ribosomal protein S4
gi|94219682|gb|ABF13841.1| ribosomal protein S4 [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 206
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/198 (61%), Positives = 151/198 (76%), Gaps = 1/198 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK K+ RRE IDLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKMSRRENIDLFLKSGVRAIDSKCKIEQPPGQHG-ARKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E ARLKG TGE +L+LLESR DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGILERQFRNYYQEAARLKGNTGESLLQLLESRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN IVNIASY++ D IS+R+KAKKQ+RI SLEL+E +W+ VD KME
Sbjct: 120 HKAIMVNNHIVNIASYQVAINDKISIRDKAKKQSRIRASLELAEQREKPTWLEVDIVKME 179
Query: 181 GVFKSEPNRSEFANDIND 198
G+FK P R + IN+
Sbjct: 180 GIFKKIPERIHLSAHINE 197
>gi|387885977|ref|YP_006316276.1| 30S ribosomal protein S4 [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386870793|gb|AFJ42800.1| 30S ribosomal protein S4 [Francisella noatunensis subsp. orientalis
str. Toba 04]
Length = 206
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS ++ D KCK++ PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE QF++Y++E R KG TG +L++LESR DNV+YRMGF++TR+EARQL+
Sbjct: 60 KVRRMYGVLEGQFKKYYVEANRRKGNTGATLLEILESRLDNVIYRMGFAATRAEARQLVV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN N+ S ++K GD+++VREKAKKQ RI N++EL++H SWI V+ +E
Sbjct: 120 HKGILVNGHTCNVPSAQVKAGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G KS P+RSE + DIN+ L
Sbjct: 180 GTMKSSPDRSELSADINEQL 199
>gi|170728985|ref|YP_001763011.1| 30S ribosomal protein S4 [Shewanella woodyi ATCC 51908]
gi|226695076|sp|B1KM36.1|RS4_SHEWM RecName: Full=30S ribosomal protein S4
gi|169814332|gb|ACA88916.1| ribosomal protein S4 [Shewanella woodyi ATCC 51908]
Length = 206
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG +R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKTRLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ + AR KG TGE +L LLE+R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRTYGVLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +VNI S+K+ D+IS+REK+KKQ RI +LE+S +W+ VD KME
Sbjct: 120 HKSIMVNGSVVNIPSFKVSANDVISIREKSKKQARIIAALEVSSQREKPTWVEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRLPERSDLSAEINEQL 199
>gi|237749540|ref|ZP_04580020.1| DNA-directed RNA polymerase subunit alpha [Oxalobacter formigenes
OXCC13]
gi|229380902|gb|EEO30993.1| DNA-directed RNA polymerase subunit alpha [Oxalobacter formigenes
OXCC13]
Length = 325
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/306 (49%), Positives = 184/306 (60%), Gaps = 76/306 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LKPRII+V++LG+ + V MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NTFLKPRIINVESLGAGRSVVEMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIID-----------------IILNLK----GVIL----------KLYN 285
HEYS+L+GVQED++D I L LK GV+L ++ N
Sbjct: 63 HEYSTLDGVQEDVVDLLLNLKGVVFKLHNRDSITLTLKKSGAGVVLASDIELPHDVEIIN 122
Query: 286 RDYAILNLKKFGKC---------------------------------------------V 300
++ I NL GK
Sbjct: 123 PEHVIANLTDNGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVSYA 182
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V ++ +E +D++ + N + EEAIRQSAR+LVDQL+VFAALE T E +
Sbjct: 183 VESARVEQRTDLDKLIINIETNGVISAEEAIRQSARILVDQLSVFAALEGTETTSEALTQ 242
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
+ VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE
Sbjct: 243 VPAVDPILLRPVDDLELTVRSANCLKAENINYIGDLIQRSENELLKTPNLGRKSLNEIKE 302
Query: 421 ILASRG 426
+LASRG
Sbjct: 303 VLASRG 308
>gi|254362773|ref|ZP_04978855.1| ribosomal protein S4 [Mannheimia haemolytica PHL213]
gi|261492716|ref|ZP_05989264.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495669|ref|ZP_05992115.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452744236|ref|ZP_21944084.1| 30S ribosomal protein S4 [Mannheimia haemolytica serotype 6 str.
H23]
gi|153094402|gb|EDN75251.1| ribosomal protein S4 [Mannheimia haemolytica PHL213]
gi|261308776|gb|EEY10033.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311569|gb|EEY12724.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452087732|gb|EME04107.1| 30S ribosomal protein S4 [Mannheimia haemolytica serotype 6 str.
H23]
Length = 208
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/202 (59%), Positives = 154/202 (76%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK--LDLRPGQHGRISGSRTSDYGYQFRE 58
MARY+GPK KL RREG DLFLKS R+++SKC+ LD+ PGQHG R SDYG Q RE
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL
Sbjct: 60 KQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SH++ +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+ +W+ VDA K
Sbjct: 120 VSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDATK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
MEGVFK P RS+ + DIN+ L
Sbjct: 180 MEGVFKRRPERSDLSADINEHL 201
>gi|429212597|ref|ZP_19203762.1| 30S ribosomal protein S4 [Pseudomonas sp. M1]
gi|428157079|gb|EKX03627.1| 30S ribosomal protein S4 [Pseudomonas sp. M1]
Length = 206
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKCK + PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAEQVPGQHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E +R KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ VN + VNI SY++K GD+++VREK+K Q RIA +LEL W+ VD K
Sbjct: 120 HKTISVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCAQRGRVEWVEVDTDKKA 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R++ + DIN+ L
Sbjct: 180 GTFKSVPARADLSADINENL 199
>gi|292492445|ref|YP_003527884.1| 30S ribosomal protein S4 [Nitrosococcus halophilus Nc4]
gi|291581040|gb|ADE15497.1| ribosomal protein S4 [Nitrosococcus halophilus Nc4]
Length = 208
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 122/201 (60%), Positives = 150/201 (74%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MA+Y GPK K RREG DLFLKS R +DSKCK++ PGQHG + +R SDY Q REK
Sbjct: 1 MAKYTGPKLKQARREGTDLFLKSGVRPIDSKCKIEQVPGQHGAGARRARMSDYALQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK++RMYG+LEKQFRRY+ E AR +G TGE +LKLLESR DNVVYRMGF STR+EARQLI
Sbjct: 61 QKLRRMYGVLEKQFRRYYKEAARRRGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLI 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH+ LVN K++N+ SY+I+ D++SVREKAKKQ RI +LEL++ WI ++ K+
Sbjct: 121 SHKGILVNGKVINVPSYQIRAEDVVSVREKAKKQDRIKFALELAQARPELDWIEINMGKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK P RSE A DI + L
Sbjct: 181 EGTFKRVPERSELAPDIQENL 201
>gi|53803440|ref|YP_114764.1| 30S ribosomal protein S4 [Methylococcus capsulatus str. Bath]
gi|61215442|sp|Q605D6.1|RS4_METCA RecName: Full=30S ribosomal protein S4
gi|53757201|gb|AAU91492.1| ribosomal protein S4 [Methylococcus capsulatus str. Bath]
Length = 206
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS +SL+SKCKLD PGQHG+ R SDY Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSRGKSLESKCKLDQPPGQHGQKR-PRLSDYAAQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGI+E+QFR Y+ E +R KG TGE +L LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KLRRIYGIMERQFRNYYAEASRRKGSTGENLLTLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +N + +NI SY+++ GD++ +R+KAK Q R+ ++L+++E SW+ VD K M+
Sbjct: 120 HKAINLNGRTLNIPSYQVQSGDVVEIRDKAKSQGRVKDALQVTEQYGFPSWVDVDVKSMK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FKS P RSE +DIN+ L
Sbjct: 180 GIFKSAPERSELGSDINEQL 199
>gi|152986119|ref|YP_001346247.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PA7]
gi|452877859|ref|ZP_21955108.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa VRFPA01]
gi|171460894|sp|A6UZL2.1|RS4_PSEA7 RecName: Full=30S ribosomal protein S4
gi|150961277|gb|ABR83302.1| ribosomal protein S4 [Pseudomonas aeruginosa PA7]
gi|452185415|gb|EME12433.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa VRFPA01]
Length = 206
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKCK + PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E +R KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY++K GD++++REK++ Q RIA +LEL W+ VD K
Sbjct: 120 HKAITVNGQTVNIPSYQVKAGDVVAIREKSRNQLRIAQALELCGQRGRVEWVEVDLDKKT 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ + DIN+ L
Sbjct: 180 GTFKSVPARSDLSADINENL 199
>gi|90020630|ref|YP_526457.1| 30S ribosomal protein S4 [Saccharophagus degradans 2-40]
gi|123277582|sp|Q21M34.1|RS4_SACD2 RecName: Full=30S ribosomal protein S4
gi|89950230|gb|ABD80245.1| SSU ribosomal protein S4P [Saccharophagus degradans 2-40]
Length = 206
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DLFLKS R L+SKCK + PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLSRREGTDLFLKSGVRPLESKCKAEAAPGQHGQRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR+KG TGE +LKLLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARIKGATGENLLKLLEGRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI S+++ GD+ISVREK+K Q RI NSL ++ W+ V+ +K E
Sbjct: 120 HKAILVNGKTVNIPSFQVNVGDVISVREKSKNQLRIQNSLGIAGQRADVEWVDVNTEKKE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ +IN+ L
Sbjct: 180 GVFKRCPDRADLPAEINENL 199
>gi|157377427|ref|YP_001476027.1| 30S ribosomal protein S4 [Shewanella sediminis HAW-EB3]
gi|189045400|sp|A8G1C6.1|RS4_SHESH RecName: Full=30S ribosomal protein S4
gi|157319801|gb|ABV38899.1| ribosomal protein S4 [Shewanella sediminis HAW-EB3]
Length = 206
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG +R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKTRLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ + AR KG TGE +L LLE+R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRTYGVLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +VNI S+K+ D+IS+REK+KKQ RI +LE++ +W+ VD KME
Sbjct: 120 HKSIMVNGSVVNIPSFKVSANDVISIREKSKKQARIIAALEVASQREKPTWVEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRLPERSDLSAEINEQL 199
>gi|443468484|ref|ZP_21058696.1| SSU ribosomal protein S4p (S9e) [Pseudomonas pseudoalcaligenes
KF707]
gi|442897646|gb|ELS24525.1| SSU ribosomal protein S4p (S9e) [Pseudomonas pseudoalcaligenes
KF707]
Length = 206
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIESAPGQHGARRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E AR KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAARRKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ S++IK GD+++VREK+K Q RI+ +LELS W+ VDA+K
Sbjct: 120 HKSITVNGQTVNVPSFQIKAGDVVAVREKSKNQLRISQALELSAQRGRAEWVEVDAEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P RS+ + DIN+ L
Sbjct: 180 GVFKSVPARSDLSADINENL 199
>gi|114561360|ref|YP_748873.1| 30S ribosomal protein S4 [Shewanella frigidimarina NCIMB 400]
gi|122301094|sp|Q089N0.1|RS4_SHEFN RecName: Full=30S ribosomal protein S4
gi|114332653|gb|ABI70035.1| SSU ribosomal protein S4P [Shewanella frigidimarina NCIMB 400]
Length = 206
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKPRLSEYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEVRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VD KME
Sbjct: 120 HKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAGQREKPTWVEVDNAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GAFKRVPERSDLSADINEQL 199
>gi|254785103|ref|YP_003072531.1| 30S ribosomal protein S4 [Teredinibacter turnerae T7901]
gi|259495299|sp|C5BQ85.1|RS4_TERTT RecName: Full=30S ribosomal protein S4
gi|237687392|gb|ACR14656.1| ribosomal protein S4 [Teredinibacter turnerae T7901]
Length = 206
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 148/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS R L+SKCK + PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLESKCKAETAPGQHGQRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ E ARLKG TGE +LKLLESR DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRTYGLLEKQFRSYYKEAARLKGATGENLLKLLESRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K +NI SY++ GD+I+VREK+K Q RI N+L ++ W+ V+A K E
Sbjct: 120 HKAILVNGKALNIPSYQVSEGDVIAVREKSKNQLRIQNALGIAAQRPDVEWVDVNADKKE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + DIN+ L
Sbjct: 180 GTFKRVPDRVDLPADINENL 199
>gi|223042027|ref|ZP_03612208.1| 30S ribosomal protein S4 [Actinobacillus minor 202]
gi|240948151|ref|ZP_04752554.1| 30S ribosomal protein S4 [Actinobacillus minor NM305]
gi|359298572|ref|ZP_09184411.1| 30S ribosomal protein S4 [Haemophilus [parainfluenzae] CCUG 13788]
gi|386388970|ref|ZP_10073812.1| ribosomal protein S4 [Haemophilus paraphrohaemolyticus HK411]
gi|387772190|ref|ZP_10128147.1| ribosomal protein S4 [Haemophilus parahaemolyticus HK385]
gi|402305983|ref|ZP_10825037.1| ribosomal protein S4 [Haemophilus sputorum HK 2154]
gi|198246529|gb|ACH82221.1| 30S ribosomal protein S4 [Actinobacillus minor 202]
gi|240297504|gb|EER48011.1| 30S ribosomal protein S4 [Actinobacillus minor NM305]
gi|385696704|gb|EIG27175.1| ribosomal protein S4 [Haemophilus paraphrohaemolyticus HK411]
gi|386907634|gb|EIJ72340.1| ribosomal protein S4 [Haemophilus parahaemolyticus HK385]
gi|400375605|gb|EJP28501.1| ribosomal protein S4 [Haemophilus sputorum HK 2154]
Length = 208
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/202 (59%), Positives = 154/202 (76%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK--LDLRPGQHGRISGSRTSDYGYQFRE 58
MARY+GPK KL RREG DLFLKS R+++SKC+ LD+ PGQHG R SDYG Q RE
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL
Sbjct: 60 KQKVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SH++ +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+ +W+ VDA K
Sbjct: 120 VSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDATK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
MEGVFK P RS+ + DIN+ L
Sbjct: 180 MEGVFKRTPERSDLSADINEHL 201
>gi|117918681|ref|YP_867873.1| 30S ribosomal protein S4 [Shewanella sp. ANA-3]
gi|152112261|sp|A0KRP8.1|RS4_SHESA RecName: Full=30S ribosomal protein S4
gi|117611013|gb|ABK46467.1| SSU ribosomal protein S4P [Shewanella sp. ANA-3]
Length = 206
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLESAPGQHG-ARKPRLSEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VD+ KME
Sbjct: 120 HKSIMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRIPERSDLSAEINEQL 199
>gi|339478087|ref|YP_004706907.1| 30S ribosomal protein S4 [Candidatus Moranella endobia PCIT]
gi|338172638|gb|AEI75039.1| 30S ribosomal protein S4 [Candidatus Moranella endobia PCIT]
Length = 206
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DLFLKS+ R+++SKCK++ PGQH +R SDYG Q REKQ
Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSSVRAIESKCKIEQPPGQHSS-RKTRLSDYGKQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ + ARLKG GE +L+LLE R DNVVYRMGFS+TR+E+ QL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKKAARLKGNPGENLLQLLEGRLDNVVYRMGFSATRAESHQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +++N+ASY++ P DI+S+R+KA+ Q R+ SLEL+E +W+ VDA KME
Sbjct: 120 HKSIMVNNRVINVASYQVTPNDIVSIRKKAQTQYRVRASLELAEQQEKPTWLEVDATKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSPDINEHL 199
>gi|213419635|ref|ZP_03352701.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 184
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 145/184 (78%), Gaps = 1/184 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFK 184
G +K
Sbjct: 180 GTYK 183
>gi|24371853|ref|NP_715895.1| 30S ribosomal protein S4 RpsD [Shewanella oneidensis MR-1]
gi|113968568|ref|YP_732361.1| 30S ribosomal protein S4 [Shewanella sp. MR-4]
gi|114045731|ref|YP_736281.1| 30S ribosomal protein S4 [Shewanella sp. MR-7]
gi|26399362|sp|P59131.1|RS4_SHEON RecName: Full=30S ribosomal protein S4
gi|123030061|sp|Q0HNR3.1|RS4_SHESM RecName: Full=30S ribosomal protein S4
gi|123326989|sp|Q0I081.1|RS4_SHESR RecName: Full=30S ribosomal protein S4
gi|24345670|gb|AAN53340.1| 30S ribosomal protein S4 RpsD [Shewanella oneidensis MR-1]
gi|113883252|gb|ABI37304.1| SSU ribosomal protein S4P [Shewanella sp. MR-4]
gi|113887173|gb|ABI41224.1| SSU ribosomal protein S4P [Shewanella sp. MR-7]
Length = 206
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLESAPGQHG-ARKPRLSEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VD+ KME
Sbjct: 120 HKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRIPERSDLSAEINEQL 199
>gi|237747390|ref|ZP_04577870.1| RNA polymerase [Oxalobacter formigenes HOxBLS]
gi|229378741|gb|EEO28832.1| RNA polymerase [Oxalobacter formigenes HOxBLS]
Length = 325
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/306 (49%), Positives = 183/306 (59%), Gaps = 76/306 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N+ LKPRII+V++LG + V MEPFERGYG+TLGNALRRVLLSSM G APTEV I+G +
Sbjct: 3 NNFLKPRIINVESLGGGRSIVEMEPFERGYGHTLGNALRRVLLSSMTGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIID-----------------IILNLK----GVI----------LKLYN 285
HEYS+L+GVQED++D I L LK G++ +++ N
Sbjct: 63 HEYSTLDGVQEDVVDLLLNLKGVVFKLHNRDVITLTLKKSGPGIVTAADIELPHDVEIIN 122
Query: 286 RDYAILNLKKFGKC---------------------------------------------V 300
D+ I NL GK
Sbjct: 123 PDHVIANLADNGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVSYA 182
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V ++ +E +D++ + N + EEAIRQSAR+LVDQL+VFAALE T E +
Sbjct: 183 VESARVEQRTDLDKLIINIETNGVITAEEAIRQSARILVDQLSVFAALEGTETTSEALTQ 242
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
+ VDPILLRPVDDLELTVRSANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE
Sbjct: 243 VPAVDPILLRPVDDLELTVRSANCLKAENINYIGDLIQRSENELLKTPNLGRKSLNEIKE 302
Query: 421 ILASRG 426
+LASRG
Sbjct: 303 VLASRG 308
>gi|78484663|ref|YP_390588.1| 30S ribosomal protein S4 [Thiomicrospira crunogena XCL-2]
gi|90101733|sp|Q31IV9.1|RS4_THICR RecName: Full=30S ribosomal protein S4
gi|78362949|gb|ABB40914.1| SSU ribosomal protein S4P [Thiomicrospira crunogena XCL-2]
Length = 206
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS RS++SKCK+D PGQHG R ++YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRSIESKCKIDQLPGQHG-AGRKRVTEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEK+FR Y+ E R KG TG +L+LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKKFRLYYKEADRRKGSTGVNLLQLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VNI SY++ GD+IS+REK++ Q+RIA +LELS + W+ VD+ K E
Sbjct: 120 HKSIQVNGQSVNIPSYEVSAGDVISIREKSRNQSRIAAALELSAQAGNVGWVEVDSSKFE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+RS+ + DI++ L
Sbjct: 180 GVFKTVPDRSDLSADISENL 199
>gi|120597013|ref|YP_961587.1| 30S ribosomal protein S4 [Shewanella sp. W3-18-1]
gi|146294817|ref|YP_001185241.1| 30S ribosomal protein S4 [Shewanella putrefaciens CN-32]
gi|386311979|ref|YP_006008144.1| 30S ribosomal protein S4 [Shewanella putrefaciens 200]
gi|152112262|sp|A1RED8.1|RS4_SHESW RecName: Full=30S ribosomal protein S4
gi|172046874|sp|A4YBV9.1|RS4_SHEPC RecName: Full=30S ribosomal protein S4
gi|110812360|gb|ABG91716.1| ribosomal protein S4 [Shewanella putrefaciens 200]
gi|120557106|gb|ABM23033.1| SSU ribosomal protein S4P [Shewanella sp. W3-18-1]
gi|145566507|gb|ABP77442.1| SSU ribosomal protein S4P [Shewanella putrefaciens CN-32]
gi|319424604|gb|ADV52678.1| ribosomal protein S4 [Shewanella putrefaciens 200]
Length = 206
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKPRLSEYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + ARLKG TGE +L+LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VD+ KME
Sbjct: 120 HKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRVPERSDLSAEINEQL 199
>gi|372269376|ref|ZP_09505424.1| 30S ribosomal protein S4 [Alteromonas sp. S89]
Length = 206
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DL LKS R DSKC+ + +PG HG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVRPHDSKCRAETKPGVHGAGRG-RLSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLEKRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN VNI SY +K GD+IS+REK+KKQ RI NS+ L+ W+ V+A K+E
Sbjct: 120 HKAILVNGATVNIPSYSVKEGDVISIREKSKKQMRIQNSVSLAAQRGDVEWVDVNASKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + +IN+ L
Sbjct: 180 GTFKRVPDRVDLPAEINENL 199
>gi|339048404|ref|ZP_08647341.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC2047]
gi|330722391|gb|EGH00239.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC2047]
Length = 206
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS R LDSKCK D PG HG SR SDYG Q REKQ
Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLDSKCKADTIPGVHG-ARRSRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARL G TGE +L+LLE+R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRLYGVLEKQFRNYYKEAARLSGATGENLLQLLETRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ SYKIK GD+++VREKAK Q RI ++LE++ W+ VDA KM
Sbjct: 120 HKSITVNGETVNVPSYKIKAGDVVAVREKAKNQLRIKSALEVAGQRGMPEWVQVDAGKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R E +IN+ L
Sbjct: 180 GEFKSIPERGELPAEINENL 199
>gi|300114712|ref|YP_003761287.1| 30S ribosomal protein S4 [Nitrosococcus watsonii C-113]
gi|299540649|gb|ADJ28966.1| ribosomal protein S4 [Nitrosococcus watsonii C-113]
Length = 208
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/201 (60%), Positives = 151/201 (75%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGR-ISGSRTSDYGYQFREK 59
MA+Y GPK K RREG DLFLKS R +DSKCK++ PGQHG +R SDY Q REK
Sbjct: 1 MAKYTGPKLKQARREGTDLFLKSGVRPIDSKCKIEQVPGQHGAGTRRARMSDYALQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK++RMYG+LE+QFRRY+ E AR KG TGE +LKLLESR DNVVYRMGF STR+EARQLI
Sbjct: 61 QKLRRMYGVLERQFRRYYKEAARRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLI 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
+H+ LVN + +NI SY+++ D+++VREKAKKQ RI +LEL++ T W+ ++A K+
Sbjct: 121 NHKGILVNGQGINIPSYQVRAEDVVAVREKAKKQDRIKFALELAQARTEAEWMEINAGKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EGVFK P RSE A DI + L
Sbjct: 181 EGVFKRVPERSELAPDIQENL 201
>gi|163752126|ref|ZP_02159331.1| 30S ribosomal protein S4 [Shewanella benthica KT99]
gi|161327961|gb|EDP99136.1| 30S ribosomal protein S4 [Shewanella benthica KT99]
Length = 206
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKLD PGQHG +R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLDTAPGQHG-ARKTRLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +VNI S+K+ D+I +REK+KKQ RI +LE++ +W+ VD KME
Sbjct: 120 HKSIMVNGSVVNIPSFKVSASDVICIREKSKKQARIVAALEVASQREKPTWVEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRLPERSDLSAEINEQL 199
>gi|304310039|ref|YP_003809637.1| 30S ribosomal protein S4 [gamma proteobacterium HdN1]
gi|301795772|emb|CBL43971.1| 30S ribosomal protein S4 [gamma proteobacterium HdN1]
Length = 206
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG+DL LKS R+ +SKC+ + PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGVDLGLKSGVRAHESKCRSEKAPGQHGERRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILEKQFR Y+ E +R KG TGE +L+LLESR DNVV+RMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGILEKQFRGYYAEASRRKGSTGENLLQLLESRLDNVVFRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A L+N K VNI SY++ GD++SVREK+K Q RI + EL+E +WI VD KK E
Sbjct: 120 HKAILINGKTVNIPSYQLAAGDVVSVREKSKSQLRIGAAQELAEQRGFAAWIEVDTKKRE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P R + +DIN+ L
Sbjct: 180 GVFKSVPERIDLPSDINENL 199
>gi|260772120|ref|ZP_05881037.1| SSU ribosomal protein S4p (S9e) [Vibrio metschnikovii CIP 69.14]
gi|260612987|gb|EEX38189.1| SSU ribosomal protein S4p (S9e) [Vibrio metschnikovii CIP 69.14]
Length = 202
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 150/196 (76%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
LVN +VN+ S+ + D++++REKAKKQ+RI +LE++E +WI VDA +MEG FK
Sbjct: 120 LVNGSVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDASQMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
+P RS+ + DIN+ L
Sbjct: 180 RKPERSDLSADINEQL 195
>gi|26399543|sp|Q9S0Q9.1|RS4_SHEVI RecName: Full=30S ribosomal protein S4
gi|5913931|dbj|BAA84524.1| ribosomal protein S4 [Shewanella violacea]
Length = 206
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PG+HG +R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETPPGRHG-ARKTRLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN +VNI S+K+ D+IS+REK+KKQ RI+ SLE++ +W+ VD KME
Sbjct: 120 HKSILVNGSVVNIPSFKVSASDVISIREKSKKQARISASLEVASQREKPTWVEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRLPERSDLSAEINEQL 199
>gi|167626783|ref|YP_001677283.1| 30S ribosomal protein S4 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254875913|ref|ZP_05248623.1| 30S ribosomal protein S4 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|189045381|sp|B0U0W6.1|RS4_FRAP2 RecName: Full=30S ribosomal protein S4
gi|158523431|gb|ABW70829.1| 30s ribosomal protein S4 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167596784|gb|ABZ86782.1| 30S ribosomal protein S4 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254841934|gb|EET20348.1| 30S ribosomal protein S4 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 206
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS ++ D KCK++ PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE QF++Y++E R KG TG +L++LESR DNVVYRMGF++TR+EARQL+
Sbjct: 60 KVRRMYGVLEGQFKKYYVEANRRKGNTGATLLEILESRLDNVVYRMGFAATRAEARQLVV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ ++N N+ S ++K GD+++VREK+KKQ RI N++EL++H SWI V+ +E
Sbjct: 120 HKGIMLNGHTCNVPSAQVKAGDVVAVREKSKKQLRIQNAIELAKHRKELSWIDVNTDSLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G KS P+RSE + DIN+ L
Sbjct: 180 GTMKSSPDRSELSADINEQL 199
>gi|74316448|ref|YP_314188.1| DNA-directed RNA polymerase subunit alpha [Thiobacillus
denitrificans ATCC 25259]
gi|90110875|sp|Q3SLM4.1|RPOA_THIDA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|74055943|gb|AAZ96383.1| DNA-directed RNA polymerase, alpha subunit [Thiobacillus
denitrificans ATCC 25259]
Length = 326
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 184/305 (60%), Gaps = 76/305 (24%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+ LKPRI++V HAKVIMEPFERGYG+TLGNALRR+LLSSM+G APTEV ISG +
Sbjct: 5 TEFLKPRIVEVDRASPLHAKVIMEPFERGYGHTLGNALRRILLSSMVGYAPTEVAISGVV 64
Query: 257 HEYSSLEGVQEDIIDIILNL---------------------KGVI----------LKLYN 285
HEYS++EGVQED++DI+LNL +GV+ +++ N
Sbjct: 65 HEYSTIEGVQEDVVDILLNLKGIAFKMHGKAEAILKVSKSGEGVVTAGDIEVGHDIEVLN 124
Query: 286 RDYAILNLKKFGKC--------------------------------------------VV 301
D+ I +L K GK V
Sbjct: 125 PDHVIAHLTKGGKLDMEIKIEAGRGYQPATARKVSEETRAVGSILVDASFSPVRRVAYAV 184
Query: 302 LASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSL 361
++ +E +D++ + + + + EEA+R +AR+LV QL+VFA LE TP + E S
Sbjct: 185 ESARVEQRTDLDRLVIDIETNGVVEPEEAVRTAARILVSQLSVFADLEGTPAESESPRS- 243
Query: 362 EKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEI 421
+VDP+LLRPVDDLELTVRSANCLKAENI+ IGDLIQRSE ELLRTPNLGRKSLNEIK++
Sbjct: 244 PQVDPLLLRPVDDLELTVRSANCLKAENIYFIGDLIQRSETELLRTPNLGRKSLNEIKDV 303
Query: 422 LASRG 426
LAS+G
Sbjct: 304 LASKG 308
>gi|337754273|ref|YP_004646784.1| 30S ribosomal protein S4 [Francisella sp. TX077308]
gi|336445878|gb|AEI35184.1| SSU ribosomal protein S4p (S9e) [Francisella sp. TX077308]
Length = 206
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS ++ D KCK++ PGQHG +R SDYG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++RMYG+LE QF++Y++E R KG TG +L++LESR DNVVYRMGF++TR+EARQL+
Sbjct: 60 KLRRMYGVLEGQFKKYYLEANRRKGNTGATLLEILESRLDNVVYRMGFAATRAEARQLVV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ ++N N+ S ++K GDI++VREKAKKQ RI N++EL++H SWI V+ +E
Sbjct: 120 HKGIMLNGHTCNVPSAQVKSGDIVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G KS P+RSE + DIN+ L
Sbjct: 180 GTMKSSPDRSELSADINEQL 199
>gi|289665160|ref|ZP_06486741.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289669367|ref|ZP_06490442.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 208
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 150/201 (74%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + SDY Q REKQ
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGAARKGKLSDYATQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + + KG TGEI+L+LLE+R DNV YRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGLLERQFRNYYKKASTKKGNTGEILLQLLETRLDNVCYRMGFAVTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE-HSTPFSWITVDAKKM 179
HR LVN K VN+ASY+IK GD I++ EKA+KQ R+ +L ++E H SW+ VD+KK
Sbjct: 121 HRGVLVNGKSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVDSKKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +DIN+ L
Sbjct: 181 SGVFKAVPDRADLPSDINEAL 201
>gi|71276503|ref|ZP_00652778.1| Ribosomal protein S4, bacterial and organelle form [Xylella
fastidiosa Dixon]
gi|170729723|ref|YP_001775156.1| 30S ribosomal protein S4 [Xylella fastidiosa M12]
gi|226703312|sp|B0U5M2.1|RS4_XYLFM RecName: Full=30S ribosomal protein S4
gi|71162680|gb|EAO12407.1| Ribosomal protein S4, bacterial and organelle form [Xylella
fastidiosa Dixon]
gi|71729643|gb|EAO31747.1| Ribosomal protein S4, bacterial and organelle form [Xylella
fastidiosa Ann-1]
gi|167964516|gb|ACA11526.1| 30S ribosomal protein S4 [Xylella fastidiosa M12]
Length = 208
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 151/201 (75%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ RPGQHG + S+ SDY Q REKQ
Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQRPGQHGAVRKSKLSDYASQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + KG TGE +L+LLE+R DNV+YRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGVLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLEL-SEHSTPFSWITVDAKKM 179
HR LVN KIVN+ SY +KPGDI+++ ++A+K + SL + +H + FSW+ VD++K
Sbjct: 121 HRGVLVNGKIVNLPSYHVKPGDIVALSQRAQKYLCVQESLTIKDQHGSAFSWVEVDSEKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +DIN+ L
Sbjct: 181 SGVFKALPDRADLPSDINEAL 201
>gi|194099938|ref|YP_002003076.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae NCCP11945]
gi|385336847|ref|YP_005890794.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae TCDC-NG08107]
gi|427826446|ref|ZP_18993497.1| ribosomal protein S4 [Neisseria meningitidis H44/76]
gi|193935228|gb|ACF31052.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae NCCP11945]
gi|316985689|gb|EFV64635.1| ribosomal protein S4 [Neisseria meningitidis H44/76]
gi|317165390|gb|ADV08931.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae TCDC-NG08107]
Length = 196
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 121/190 (63%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Query: 11 LCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILE 70
+ RREG DLFLKSARRSLDSKCK+D PGQHG R SDYG Q REKQK++R+YG+LE
Sbjct: 1 MARREGTDLFLKSARRSLDSKCKIDSAPGQHG-AKKPRLSDYGLQLREKQKIRRIYGVLE 59
Query: 71 KQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKI 130
+QFRRYF E R KG TGE++L+LLESR DNVVYRMGF STR+EARQL+SH+A +VN ++
Sbjct: 60 RQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQV 119
Query: 131 VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRS 190
VNI S+++K GD++SVREKAKKQ RI +L L+ W++VDA K+EGVFK+ P+RS
Sbjct: 120 VNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKLEGVFKNMPDRS 179
Query: 191 EFANDINDLL 200
E DIN+ L
Sbjct: 180 ELTGDINEQL 189
>gi|421344789|ref|ZP_15795191.1| ribosomal protein S4 [Vibrio cholerae HC-43B1]
gi|421348569|ref|ZP_15798945.1| ribosomal protein S4 [Vibrio cholerae HC-46A1]
gi|424614374|ref|ZP_18053157.1| ribosomal protein S4 [Vibrio cholerae HC-41A1]
gi|424637628|ref|ZP_18075633.1| ribosomal protein S4 [Vibrio cholerae HC-55A1]
gi|424657673|ref|ZP_18094956.1| ribosomal protein S4 [Vibrio cholerae HC-81A2]
gi|395938872|gb|EJH49558.1| ribosomal protein S4 [Vibrio cholerae HC-43B1]
gi|395940933|gb|EJH51613.1| ribosomal protein S4 [Vibrio cholerae HC-46A1]
gi|408010413|gb|EKG48272.1| ribosomal protein S4 [Vibrio cholerae HC-41A1]
gi|408022310|gb|EKG59527.1| ribosomal protein S4 [Vibrio cholerae HC-55A1]
gi|408051641|gb|EKG86722.1| ribosomal protein S4 [Vibrio cholerae HC-81A2]
Length = 202
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 117/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
LVN K+VN+ S+ + D+++VREKAKKQ+RI +LE++E +WI VD MEG FK
Sbjct: 120 LVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
P RS+ + DIN+ L
Sbjct: 180 RMPERSDLSADINEQL 195
>gi|407697588|ref|YP_006822376.1| 30S ribosomal protein S4 [Alcanivorax dieselolei B5]
gi|407254926|gb|AFT72033.1| 30S ribosomal protein S4 [Alcanivorax dieselolei B5]
Length = 208
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 122/202 (60%), Positives = 152/202 (75%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQH--GRISGSRTSDYGYQFRE 58
MARY+GPK KL RREG DLFLKS R L+SKCK + PGQ GR SR SDYG Q RE
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGIRPLESKCKAEQPPGQAAAGR-RPSRLSDYGVQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKV+RMYG+LEKQFR Y+ + AR +G TGE++L+LLE R DNVVYRMGF +TRSEARQL
Sbjct: 60 KQKVRRMYGVLEKQFRSYYKKAARSRGATGEVLLQLLEGRLDNVVYRMGFGATRSEARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SHRA LVN + VNI SY+I GD+I+VREK+K Q R+ N++EL++ +W+ VD KK
Sbjct: 120 VSHRAILVNGQSVNIPSYQINAGDVITVREKSKNQLRVKNAMELAQQRGFPTWLEVDEKK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
+EG FK+ P R + +IN+ L
Sbjct: 180 LEGTFKALPERIDLPAEINENL 201
>gi|21672746|ref|NP_660813.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|22654271|sp|P41186.3|RS4_BUCAP RecName: Full=30S ribosomal protein S4
gi|21623392|gb|AAM68024.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 206
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS RS+DSKCKL+ PGQHG + R SDY Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGFRSIDSKCKLEHPPGQHG-VRKPRLSDYAIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ + +R KG TGE +L+LLE R DNVVYRMGF TRSE+RQLIS
Sbjct: 60 KVRRLYGVLERQFRIYYKKASRSKGNTGENLLQLLERRLDNVVYRMGFGCTRSESRQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN IVNIASY+I P D ISVR+K+K Q+RI +LEL+E WI V+ KME
Sbjct: 120 HKSIKVNNNIVNIASYQISPNDRISVRDKSKNQSRIKAALELTEQREKLMWIEVNVTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P RS+ + +IN+ L
Sbjct: 180 GIFKRFPERSDLSAEINEHL 199
>gi|336309734|ref|ZP_08564714.1| SSU ribosomal protein S4p (S9e) [Shewanella sp. HN-41]
gi|335866848|gb|EGM71801.1| SSU ribosomal protein S4p (S9e) [Shewanella sp. HN-41]
Length = 206
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLESAPGQHG-ARKPRLSEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + ARLKG TGE +L+LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VD KME
Sbjct: 120 HKSIMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDNAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRVPERSDLSAEINEQL 199
>gi|28198376|ref|NP_778690.1| 30S ribosomal protein S4 [Xylella fastidiosa Temecula1]
gi|182681017|ref|YP_001829177.1| 30S ribosomal protein S4 [Xylella fastidiosa M23]
gi|417558929|ref|ZP_12209888.1| Ribosomal protein S4 [Xylella fastidiosa EB92.1]
gi|32129992|sp|Q87E60.1|RS4_XYLFT RecName: Full=30S ribosomal protein S4
gi|226703311|sp|B2I8J2.1|RS4_XYLF2 RecName: Full=30S ribosomal protein S4
gi|28056446|gb|AAO28339.1| 30S ribosomal protein S4 [Xylella fastidiosa Temecula1]
gi|182631127|gb|ACB91903.1| ribosomal protein S4 [Xylella fastidiosa M23]
gi|338178511|gb|EGO81497.1| Ribosomal protein S4 [Xylella fastidiosa EB92.1]
Length = 208
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 152/201 (75%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ RPGQHG + S+ SDY Q REKQ
Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQRPGQHGAVRKSKLSDYASQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + KG TGE +L+LLE+R DNV+YRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGVLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLEL-SEHSTPFSWITVDAKKM 179
HR+ LVN K+VN+ SY +KPGD++++ ++A+K + SL + +H + FSWI VD++K
Sbjct: 121 HRSVLVNGKMVNLPSYHVKPGDVVALSQRAQKYLCVQESLTIKDQHGSAFSWIEVDSEKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +DIN+ L
Sbjct: 181 SGVFKALPDRADLPSDINEAL 201
>gi|114319643|ref|YP_741326.1| 30S ribosomal protein S4P [Alkalilimnicola ehrlichii MLHE-1]
gi|122312435|sp|Q0ABF1.1|RS4_ALHEH RecName: Full=30S ribosomal protein S4
gi|114226037|gb|ABI55836.1| SSU ribosomal protein S4P [Alkalilimnicola ehrlichii MLHE-1]
Length = 206
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DLFLKS R LDSKCKLD PG + +R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLARREGTDLFLKSGVRPLDSKCKLDQPPGPKLQRR-TRMSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LE+QFR Y+ E AR KG TG ++L+LLESR DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGVLERQFRNYYKEAARQKGATGTVLLQLLESRLDNVVYRMGFATTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR VN ++VN+ S ++ PGD++ ++EKA+KQ R+ +LE+++ + +W+ VD KK E
Sbjct: 120 HRGVQVNGRVVNVPSMQVSPGDLVGLKEKAQKQLRVQAALEMAQQNGWPAWVEVDPKKFE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K+ P+R++ + +IN+ L
Sbjct: 180 GTYKARPDRADLSAEINESL 199
>gi|77165764|ref|YP_344289.1| 30S ribosomal protein S4 [Nitrosococcus oceani ATCC 19707]
gi|254433943|ref|ZP_05047451.1| ribosomal protein S4 [Nitrosococcus oceani AFC27]
gi|90101699|sp|Q3J8T7.1|RS4_NITOC RecName: Full=30S ribosomal protein S4
gi|76884078|gb|ABA58759.1| SSU ribosomal protein S4P [Nitrosococcus oceani ATCC 19707]
gi|207090276|gb|EDZ67547.1| ribosomal protein S4 [Nitrosococcus oceani AFC27]
Length = 208
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/201 (59%), Positives = 151/201 (75%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MA+Y GPK K RREG DLFLKS R +DSKCK++ PGQHG + +R SDY Q REK
Sbjct: 1 MAKYTGPKLKQARREGTDLFLKSGVRPIDSKCKIEQVPGQHGAGARRARMSDYALQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK++RMYG+LE+QFRRY+ E AR KG TGE +LKLLESR DNVVYRMGF STR+EARQLI
Sbjct: 61 QKLRRMYGVLERQFRRYYKEAARRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLI 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
+H+ LVN + +NI SY+++ D+++VREKAK+Q RI +LEL++ WI ++A K+
Sbjct: 121 NHKGVLVNGQGINIPSYQVRAEDVVAVREKAKRQDRIKFALELAQARAEAEWIEINAGKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EGVFK P RSE A DI + L
Sbjct: 181 EGVFKRVPERSELAPDIQENL 201
>gi|400405275|ref|YP_006588134.1| 30S ribosomal protein S4 [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363638|gb|AFP84706.1| ribosomal protein S4, bacterial/organelle type [secondary
endosymbiont of Ctenarytaina eucalypti]
Length = 206
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGFRTIDAKCKIEQPPGQHG-ARKPRLSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ + ARLKG TGE +LKLLESR DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRLYGVLERQFRNYYKQAARLKGNTGENLLKLLESRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN +VNIAS+++ P ++S+ EKAK Q+R+ SLEL E W+ VD+ K
Sbjct: 120 HKAVMVNGHVVNIASHQVSPHQVVSICEKAKNQSRVRASLELIEQREKPPWMEVDSAKTS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ + DIN+ L
Sbjct: 180 GVFKRIPERTDLSADINEHL 199
>gi|157960037|ref|YP_001500071.1| 30S ribosomal protein S4 [Shewanella pealeana ATCC 700345]
gi|167626016|ref|YP_001676310.1| 30S ribosomal protein S4 [Shewanella halifaxensis HAW-EB4]
gi|189045398|sp|B0TLY9.1|RS4_SHEHH RecName: Full=30S ribosomal protein S4
gi|189045399|sp|A8GYZ9.1|RS4_SHEPA RecName: Full=30S ribosomal protein S4
gi|226695075|sp|B8CNF7.1|RS4_SHEPW RecName: Full=30S ribosomal protein S4
gi|157845037|gb|ABV85536.1| ribosomal protein S4 [Shewanella pealeana ATCC 700345]
gi|167356038|gb|ABZ78651.1| ribosomal protein S4 [Shewanella halifaxensis HAW-EB4]
gi|212556337|gb|ACJ28791.1| Ribosomal protein S4 [Shewanella piezotolerans WP3]
Length = 206
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG +R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKTRLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +VNI S+K+ D++SVREK++ Q RI +LE+S +W+ VD KME
Sbjct: 120 HKSIMVNGSVVNIPSFKVSANDVVSVREKSRTQARIKAALEVSAQREKPTWVEVDNTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRIPERSDLSAEINEQL 199
>gi|357406652|ref|YP_004918576.1| 30S ribosomal protein S4 [Methylomicrobium alcaliphilum 20Z]
gi|351719317|emb|CCE24993.1| 30S ribosomal subunit protein S4 [Methylomicrobium alcaliphilum
20Z]
Length = 206
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS +SLD KCKLD RPGQHG +R+SDY Q R KQ
Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSRGKSLDGKCKLDQRPGQHG-TKRTRSSDYALQLRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+++R+YG+LEKQFR Y+ KG TGE +L LLESR DNVVYRMGF++TR+EARQL+S
Sbjct: 60 RIRRIYGVLEKQFRNYYKIADLKKGATGENLLNLLESRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN +VNI SY+++PGD+I +REKAKKQ RI ++L ++E +W+ V++K M
Sbjct: 120 HKSIMVNDSLVNIPSYQVQPGDVIGIREKAKKQQRIIDALTVTEQYGFPNWVDVNSKDMA 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R E +DIN+ L
Sbjct: 180 GTFKSLPDRVELGSDINEQL 199
>gi|258622736|ref|ZP_05717754.1| 30S ribosomal protein S4 [Vibrio mimicus VM573]
gi|262166593|ref|ZP_06034330.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus VM223]
gi|258584924|gb|EEW09655.1| 30S ribosomal protein S4 [Vibrio mimicus VM573]
gi|262026309|gb|EEY44977.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus VM223]
Length = 202
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
LVN K+VN+ S+ + D++++REKAKKQ+RI +LE++E +WI VD MEG FK
Sbjct: 120 LVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDVNTMEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
P RS+ + DIN+ L
Sbjct: 180 RLPERSDLSADINEQL 195
>gi|323144988|ref|ZP_08079548.1| ribosomal protein S4 [Succinatimonas hippei YIT 12066]
gi|322415267|gb|EFY06041.1| ribosomal protein S4 [Succinatimonas hippei YIT 12066]
Length = 207
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 153/201 (76%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y GP KL RREG+DLFLKS R++++KCKLD PGQHG + R SDYG Q REKQ
Sbjct: 1 MAKYTGPALKLSRREGVDLFLKSGVRAIETKCKLDTAPGQHG-ANKPRLSDYGMQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ + A++ G TGE +L+LLESR DNVVYRMGF STR EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKKAAKMSGNTGENLLQLLESRLDNVVYRMGFGSTRMEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELS-EHSTPFSWITVDAKKM 179
H+A VN +VNI SY+++P D+I+VREKAKKQ RI +++LS + + +WI VD M
Sbjct: 120 HKAITVNDHVVNIPSYQVQPSDVIAVREKAKKQLRIKAAIDLSGQRALKPTWIDVDHNAM 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+G +K++P RSE +DI + L
Sbjct: 180 KGTYKNKPERSELPSDIKEQL 200
>gi|104779779|ref|YP_606277.1| 30S ribosomal protein S4 [Pseudomonas entomophila L48]
gi|152112249|sp|Q1IFU2.1|RS4_PSEE4 RecName: Full=30S ribosomal protein S4
gi|95108766|emb|CAK13460.1| 30S ribosomal protein S4 [Pseudomonas entomophila L48]
Length = 206
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ A KG TGE +L++LE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQAAASKKGATGENLLQMLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY+++PGD++SVREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISVNGKTVNIPSYQVRPGDVVSVREKSLNQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|126176331|ref|YP_001052480.1| 30S ribosomal protein S4 [Shewanella baltica OS155]
gi|152998773|ref|YP_001364454.1| 30S ribosomal protein S4 [Shewanella baltica OS185]
gi|160873349|ref|YP_001552665.1| 30S ribosomal protein S4 [Shewanella baltica OS195]
gi|217975177|ref|YP_002359928.1| 30S ribosomal protein S4 [Shewanella baltica OS223]
gi|373951432|ref|ZP_09611393.1| ribosomal protein S4 [Shewanella baltica OS183]
gi|378706588|ref|YP_005271482.1| 30S ribosomal protein S4 [Shewanella baltica OS678]
gi|386322748|ref|YP_006018865.1| 30S ribosomal protein S4 [Shewanella baltica BA175]
gi|386343083|ref|YP_006039449.1| 30S ribosomal protein S4 [Shewanella baltica OS117]
gi|418025024|ref|ZP_12664004.1| ribosomal protein S4 [Shewanella baltica OS625]
gi|171704521|sp|A6WHV2.1|RS4_SHEB8 RecName: Full=30S ribosomal protein S4
gi|171769980|sp|A3DA48.1|RS4_SHEB5 RecName: Full=30S ribosomal protein S4
gi|189045397|sp|A9KWC5.1|RS4_SHEB9 RecName: Full=30S ribosomal protein S4
gi|254764609|sp|B8EBI1.1|RS4_SHEB2 RecName: Full=30S ribosomal protein S4
gi|125999536|gb|ABN63611.1| SSU ribosomal protein S4P [Shewanella baltica OS155]
gi|151363391|gb|ABS06391.1| ribosomal protein S4 [Shewanella baltica OS185]
gi|160858871|gb|ABX47405.1| ribosomal protein S4 [Shewanella baltica OS195]
gi|217500312|gb|ACK48505.1| ribosomal protein S4 [Shewanella baltica OS223]
gi|315265577|gb|ADT92430.1| ribosomal protein S4 [Shewanella baltica OS678]
gi|333816893|gb|AEG09559.1| ribosomal protein S4 [Shewanella baltica BA175]
gi|334865484|gb|AEH15955.1| ribosomal protein S4 [Shewanella baltica OS117]
gi|353535437|gb|EHC04999.1| ribosomal protein S4 [Shewanella baltica OS625]
gi|373888032|gb|EHQ16924.1| ribosomal protein S4 [Shewanella baltica OS183]
Length = 206
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHG-ARKPRLSEYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKDAARTKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VD KME
Sbjct: 120 HKSIMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDNAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRVPERSDLSAEINEQL 199
>gi|167031523|ref|YP_001666754.1| 30S ribosomal protein S4 [Pseudomonas putida GB-1]
gi|189045393|sp|B0KK90.1|RS4_PSEPG RecName: Full=30S ribosomal protein S4
gi|166858011|gb|ABY96418.1| ribosomal protein S4 [Pseudomonas putida GB-1]
Length = 206
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ A KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY+++PGD+++VREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISVNGKTVNIPSYQVRPGDVVAVREKSLAQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|325272032|ref|ZP_08138475.1| 30S ribosomal protein S4 [Pseudomonas sp. TJI-51]
gi|324102836|gb|EGC00240.1| 30S ribosomal protein S4 [Pseudomonas sp. TJI-51]
Length = 206
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ A KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY+++PGD+++VREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISVNGKTVNIPSYQVRPGDVVAVREKSLSQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|339485411|ref|YP_004699939.1| 30S ribosomal protein S4 [Pseudomonas putida S16]
gi|421528324|ref|ZP_15974891.1| 30S ribosomal protein S4 [Pseudomonas putida S11]
gi|431800531|ref|YP_007227434.1| 30S ribosomal protein S4 [Pseudomonas putida HB3267]
gi|338836254|gb|AEJ11059.1| 30S ribosomal protein S4 [Pseudomonas putida S16]
gi|402214281|gb|EJT85611.1| 30S ribosomal protein S4 [Pseudomonas putida S11]
gi|430791296|gb|AGA71491.1| 30S ribosomal protein S4 [Pseudomonas putida HB3267]
Length = 206
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ A KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY+++PGD+++VREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISVNGKTVNIPSYQVRPGDVVAVREKSLNQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|26987219|ref|NP_742644.1| 30S ribosomal protein S4 [Pseudomonas putida KT2440]
gi|148545763|ref|YP_001265865.1| 30S ribosomal protein S4 [Pseudomonas putida F1]
gi|386010137|ref|YP_005928414.1| protein RpsD [Pseudomonas putida BIRD-1]
gi|395446861|ref|YP_006387114.1| 30S ribosomal protein S4 [Pseudomonas putida ND6]
gi|397696223|ref|YP_006534106.1| 30S ribosomal protein S4 [Pseudomonas putida DOT-T1E]
gi|421524870|ref|ZP_15971491.1| 30S ribosomal protein S4 [Pseudomonas putida LS46]
gi|37999419|sp|Q88QL2.1|RS4_PSEPK RecName: Full=30S ribosomal protein S4
gi|172048431|sp|A5VXS1.1|RS4_PSEP1 RecName: Full=30S ribosomal protein S4
gi|24981858|gb|AAN66108.1|AE016239_3 ribosomal protein S4 [Pseudomonas putida KT2440]
gi|148509821|gb|ABQ76681.1| SSU ribosomal protein S4P [Pseudomonas putida F1]
gi|313496843|gb|ADR58209.1| RpsD [Pseudomonas putida BIRD-1]
gi|388560858|gb|AFK69999.1| 30S ribosomal protein S4 [Pseudomonas putida ND6]
gi|397332953|gb|AFO49312.1| 30S ribosomal protein S4 [Pseudomonas putida DOT-T1E]
gi|402751333|gb|EJX11846.1| 30S ribosomal protein S4 [Pseudomonas putida LS46]
Length = 206
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ A KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY+++PGD+++VREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISVNGKTVNIPSYQVRPGDVVAVREKSLGQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|226942802|ref|YP_002797875.1| 30S ribosomal protein S4 [Azotobacter vinelandii DJ]
gi|259495268|sp|C1DKN7.1|RS4_AZOVD RecName: Full=30S ribosomal protein S4
gi|226717729|gb|ACO76900.1| 30S ribosomal protein S4 [Azotobacter vinelandii DJ]
Length = 206
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R S+YG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGSRALESKCNVESAPGIHGQRRG-RLSEYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E +R KG TGE +L+LLE R DNVVYRMGF +TR+E+RQLIS
Sbjct: 60 KVRRIYGVLERQFSGYYKEASRRKGSTGENLLQLLECRLDNVVYRMGFGATRAESRQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY++K GD++++REKAK Q RIA +LEL W+ VD +K
Sbjct: 120 HKAITVNGQTVNIPSYQVKVGDVVAIREKAKNQLRIAQALELCAQRGRVEWVEVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P RS+ + DIN+ L
Sbjct: 180 GVFKSVPARSDLSADINENL 199
>gi|398843880|ref|ZP_10600997.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM84]
gi|398255112|gb|EJN40152.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM84]
Length = 206
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ A KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY+++PGD+++VREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISVNGKTVNIPSYQVRPGDVVAVREKSSNQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P R + + DIN+ L
Sbjct: 180 GVFKNVPARGDLSADINENL 199
>gi|15837777|ref|NP_298465.1| 30S ribosomal protein S4 [Xylella fastidiosa 9a5c]
gi|26399518|sp|Q9PE53.1|RS4_XYLFA RecName: Full=30S ribosomal protein S4
gi|9106141|gb|AAF83985.1|AE003951_10 30S ribosomal protein S4 [Xylella fastidiosa 9a5c]
Length = 208
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 151/201 (75%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ RPGQHG + S+ SDY Q REKQ
Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQRPGQHGAVRKSKLSDYASQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + KG TGE +L+LLE+R DNV+YRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGVLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLEL-SEHSTPFSWITVDAKKM 179
HR LVN K+VN+ SY +KPGD++++ ++A+K + SL + +H + FSW+ VD++K
Sbjct: 121 HRRVLVNGKLVNLPSYHVKPGDVVALSQRAQKYLCVQESLTIKDQHGSAFSWVEVDSEKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +DIN+ L
Sbjct: 181 SGVFKAFPDRADLPSDINEAL 201
>gi|384228469|ref|YP_005620204.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539402|gb|AEO08269.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 206
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+YIGPK KL RREG DLFLKS RS++SKCKL+ PGQHG I R SDY Q REKQ
Sbjct: 1 MAKYIGPKLKLSRREGTDLFLKSGLRSIESKCKLEQPPGQHG-IKKPRLSDYAVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QF+ Y+ + ARL G TG +L+LLESR DNVVYRMGF TR+E+RQLI+
Sbjct: 60 KVRRLYGILERQFKIYYKKAARLTGNTGANLLQLLESRLDNVVYRMGFGCTRAESRQLIN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VNKKIVNI+SY++ P D +S+R K++ Q+RI +LEL E W+ V++ KME
Sbjct: 120 HKAVMVNKKIVNISSYQVAPNDQVSIRVKSQNQSRIKAALELVEQREKPIWLEVNSSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RS+ + +IN+ L
Sbjct: 180 GVFKRFPERSDLSAEINEYL 199
>gi|21230387|ref|NP_636304.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21241760|ref|NP_641342.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citri str.
306]
gi|66769619|ref|YP_244381.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris
str. 8004]
gi|78046578|ref|YP_362753.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|188992831|ref|YP_001904841.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris
str. B100]
gi|294627861|ref|ZP_06706440.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294664166|ref|ZP_06729552.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325916510|ref|ZP_08178779.1| SSU ribosomal protein S4P [Xanthomonas vesicatoria ATCC 35937]
gi|325921504|ref|ZP_08183359.1| SSU ribosomal protein S4P [Xanthomonas gardneri ATCC 19865]
gi|325925364|ref|ZP_08186766.1| SSU ribosomal protein S4P [Xanthomonas perforans 91-118]
gi|346723903|ref|YP_004850572.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citrumelo F1]
gi|381171772|ref|ZP_09880912.1| ribosomal protein S4 [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|384426784|ref|YP_005636141.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. raphani 756C]
gi|390992797|ref|ZP_10263014.1| ribosomal protein S4 [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|418518913|ref|ZP_13085042.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418522319|ref|ZP_13088356.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|59800213|sp|P0A0X9.1|RS4_XANCP RecName: Full=30S ribosomal protein S4
gi|59800214|sp|P0A0Y0.1|RS4_XANAC RecName: Full=30S ribosomal protein S4
gi|81304426|sp|Q4URG2.1|RS4_XANC8 RecName: Full=30S ribosomal protein S4
gi|90101736|sp|Q3BWW0.1|RS4_XANC5 RecName: Full=30S ribosomal protein S4
gi|226695102|sp|B0RU59.1|RS4_XANCB RecName: Full=30S ribosomal protein S4
gi|4098576|gb|AAD00324.1| ribosomal protein S4 [Xanthomonas campestris pv. campestris]
gi|21107132|gb|AAM35878.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citri str.
306]
gi|21111944|gb|AAM40228.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66574951|gb|AAY50361.1| 30S ribosomal protein s4 [Xanthomonas campestris pv. campestris
str. 8004]
gi|78035008|emb|CAJ22653.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|167734591|emb|CAP52801.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris]
gi|292597775|gb|EFF41933.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292606069|gb|EFF49334.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325537299|gb|EGD09026.1| SSU ribosomal protein S4P [Xanthomonas vesicatoria ATCC 35937]
gi|325544242|gb|EGD15623.1| SSU ribosomal protein S4P [Xanthomonas perforans 91-118]
gi|325548051|gb|EGD19050.1| SSU ribosomal protein S4P [Xanthomonas gardneri ATCC 19865]
gi|341935884|gb|AEL06023.1| ribosomal protein S4 [Xanthomonas campestris pv. raphani 756C]
gi|346648650|gb|AEO41274.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citrumelo F1]
gi|372552465|emb|CCF69989.1| ribosomal protein S4 [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|380687732|emb|CCG37399.1| ribosomal protein S4 [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|410701434|gb|EKQ59958.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410701939|gb|EKQ60453.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 208
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/201 (58%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + SDY Q REKQ
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGAARKGKLSDYATQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + + KG TGE +L+LLE+R DNV YRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVCYRMGFAVTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE-HSTPFSWITVDAKKM 179
HR LVN K VN+ASY+IK GD I++ EKA+KQ R+ +L ++E H SW+ VD+KK
Sbjct: 121 HRGVLVNGKSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVDSKKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +DIN+ L
Sbjct: 181 SGVFKAVPDRADLPSDINEAL 201
>gi|319787902|ref|YP_004147377.1| 30S ribosomal protein S4 [Pseudoxanthomonas suwonensis 11-1]
gi|317466414|gb|ADV28146.1| ribosomal protein S4 [Pseudoxanthomonas suwonensis 11-1]
Length = 208
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 148/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + SDY Q REKQ
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGAARKGKLSDYATQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + + KG TGE +L+LLE+R DNVVYRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPSARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE-HSTPFSWITVDAKKM 179
HR LVN K VN+ SY++K GD I++ EKA+KQ R+ +L ++E H SWI VDAKK
Sbjct: 121 HRGVLVNGKPVNLPSYQVKAGDSIALSEKAQKQLRVQEALTVAEQHDMTPSWIEVDAKKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ DIN+ L
Sbjct: 181 AGVFKAVPDRADLPADINEAL 201
>gi|46911985|emb|CAG18783.1| putative ribosomal protein S4 [Photobacterium profundum SS9]
Length = 202
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 146/196 (74%), Gaps = 1/196 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK+D PGQHG G R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARRG-RLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF STR+E+RQL+SH+A
Sbjct: 60 TYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
LVN +VN+ S+K+ D++S+REKAK Q RI +LE++ +W+ VD K+EG FK
Sbjct: 120 LVNGTVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNSKLEGTFK 179
Query: 185 SEPNRSEFANDINDLL 200
P RS+ + DIN+ L
Sbjct: 180 RLPERSDLSADINEHL 195
>gi|386828730|ref|ZP_10115837.1| ribosomal protein S4, bacterial/organelle type [Beggiatoa alba
B18LD]
gi|386429614|gb|EIJ43442.1| ribosomal protein S4, bacterial/organelle type [Beggiatoa alba
B18LD]
Length = 206
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+LDSKCKLD PGQHG R SDY Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSRARALDSKCKLDKVPGQHGD-KRQRLSDYASQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGILE+QF Y+ + + +KG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KLRRIYGILERQFHNYYTKASSMKGSTGENLLHLLECRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A ++N++ VNI SY++K GD+++VREK++ Q RI ++L +E W+ VD KM+
Sbjct: 120 HKAIVINEQCVNIPSYQVKAGDVVAVREKSRNQLRIKSALSSAEEYGFPEWVDVDVSKMQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P R E +DIN+ L
Sbjct: 180 GVFKTAPARMELPSDINEQL 199
>gi|71729182|gb|EAO31303.1| Ribosomal protein S4, bacterial and organelle form [Xylella
fastidiosa Ann-1]
Length = 208
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 152/201 (75%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ RPGQHG + S+ SDY Q REKQ
Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQRPGQHGAVRKSKLSDYASQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + KG TGE +L+LLE+R DNV+YRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGVLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLEL-SEHSTPFSWITVDAKKM 179
HR+ LVN K+VN+ SY +KPGD++++ ++A+K + SL + ++ + FSWI VD++K
Sbjct: 121 HRSVLVNGKMVNLPSYHVKPGDVVALSQRAQKYLCVQESLTIKDQYGSAFSWIEVDSEKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +DIN+ L
Sbjct: 181 SGVFKALPDRADLPSDINEAL 201
>gi|424042927|ref|ZP_17780588.1| ribosomal protein S4, partial [Vibrio cholerae HENC-02]
gi|408884052|gb|EKM22812.1| ribosomal protein S4, partial [Vibrio cholerae HENC-02]
Length = 182
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 142/183 (77%), Gaps = 1/183 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+K+ D++S+REKAK+Q RI +LE++E +WI VD KME
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKME 179
Query: 181 GVF 183
G F
Sbjct: 180 GTF 182
>gi|384227915|ref|YP_005619660.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538855|gb|AEO08832.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 206
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DLFLKS R ++SKCKL+ PGQHG + R SDY Q REKQ
Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGLRPIESKCKLEQPPGQHG-VRKPRLSDYAVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QF+ Y+ A LKG TG +L LLESR DNVVYRMGF TR+E+RQLIS
Sbjct: 60 KVRRLYGILERQFKIYYKLAASLKGNTGANLLNLLESRLDNVVYRMGFGCTRAESRQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN K+VNIASY++ P D+IS+R+K+K Q+RI +LEL E WI VD+ KME
Sbjct: 120 HKSIMVNNKVVNIASYQVSPNDLISIRKKSKNQSRIKAALELVEQREKPIWIEVDSTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P RS+ + +IN+ L
Sbjct: 180 GIFKRFPERSDLSAEINEYL 199
>gi|58583182|ref|YP_202198.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84625021|ref|YP_452393.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188575513|ref|YP_001912442.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae PXO99A]
gi|384418062|ref|YP_005627422.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzicola BLS256]
gi|75508108|sp|Q5GWV8.1|RS4_XANOR RecName: Full=30S ribosomal protein S4
gi|123521160|sp|Q2P008.1|RS4_XANOM RecName: Full=30S ribosomal protein S4
gi|226732182|sp|B2SQT3.1|RS4_XANOP RecName: Full=30S ribosomal protein S4
gi|58427776|gb|AAW76813.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84368961|dbj|BAE70119.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188519965|gb|ACD57910.1| ribosomal protein S4 [Xanthomonas oryzae pv. oryzae PXO99A]
gi|353460976|gb|AEQ95255.1| ribosomal protein S4 [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 208
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/201 (58%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + SDY Q REKQ
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGASRKGKLSDYATQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFR Y+ + + KG TGE +L+LLE+R DNV YRMGF+ TR ARQL+S
Sbjct: 61 KVKRIYGLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVCYRMGFAVTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE-HSTPFSWITVDAKKM 179
HR LVN K VN+ASY+IK GD I++ EKA+KQ R+ +L ++E H SW+ VD+KK
Sbjct: 121 HRCVLVNGKSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVDSKKF 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +DIN+ L
Sbjct: 181 SGVFKAVPDRADLPSDINEAL 201
>gi|256821686|ref|YP_003145649.1| 30S ribosomal protein S4 [Kangiella koreensis DSM 16069]
gi|256795225|gb|ACV25881.1| ribosomal protein S4 [Kangiella koreensis DSM 16069]
Length = 206
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG+DL KS R++++KCK+++ PGQHG SR SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGVDLGHKSGVRAIETKCKIEVAPGQHG-ARRSRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E RLKG TG +L+LLESR DNVVYRMG+++TR EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEADRLKGATGVNLLQLLESRLDNVVYRMGYAATRGEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A L+N + VNI SY +K D++SVREK++KQ RI +LEL+ WI VD KKME
Sbjct: 120 HKAILINGETVNIPSYTVKAEDVVSVREKSQKQARIVAALELAAQRDKPEWIEVDGKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RSE IN+ L
Sbjct: 180 GQFKRVPERSELDASINENL 199
>gi|332286117|ref|YP_004418028.1| DNA-directed RNA polymerase subunit alpha [Pusillimonas sp. T7-7]
gi|330430070|gb|AEC21404.1| DNA-directed RNA polymerase alpha chain [Pusillimonas sp. T7-7]
Length = 329
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/306 (46%), Positives = 182/306 (59%), Gaps = 78/306 (25%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G NHA+V+MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGKNHARVVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLK---------------------GVIL----------KLYNRD 287
YS++ GV+ED++DI+LNLK GV+L ++ N D
Sbjct: 66 YSTVAGVREDVVDILLNLKGVVFKLHNREEVTLVLRKQGAGVVLASDIELPHDVEIINPD 125
Query: 288 YAILNLKKFGKCVV----------LASDIELLSDIELVNPNHIIAHLS------------ 325
+ I NL GK + + ++ LSD I+ S
Sbjct: 126 HVIANLTDAGKLEMQIKVEQGRGYVPGNVRALSDDRTHTIGRIVLDASYSPVRRVSYAVE 185
Query: 326 -----------------------DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS-- 360
EEA+RQSAR+L+DQ++VFAALE E S
Sbjct: 186 SARVEQRTDLDKLVLDIETNGVVSPEEAVRQSARILMDQISVFAALEGAGDSYEDAPSRA 245
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
+++DP+LLRPVDDLELTVRSANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE
Sbjct: 246 AQQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKE 305
Query: 421 ILASRG 426
+LA+RG
Sbjct: 306 VLAARG 311
>gi|409398047|ref|ZP_11248899.1| 30S ribosomal protein S4 [Pseudomonas sp. Chol1]
gi|419954709|ref|ZP_14470845.1| 30S ribosomal protein S4 [Pseudomonas stutzeri TS44]
gi|387968573|gb|EIK52862.1| 30S ribosomal protein S4 [Pseudomonas stutzeri TS44]
gi|409117553|gb|EKM93981.1| 30S ribosomal protein S4 [Pseudomonas sp. Chol1]
Length = 206
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIETPPGVHGQRRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VNI SY++K GD+++VREK + Q RIA +LEL W+ VDA K
Sbjct: 120 HKSISVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDADKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FKS P RS+ + DIN+ L
Sbjct: 180 GIFKSVPARSDLSADINENL 199
>gi|381153108|ref|ZP_09864977.1| ribosomal protein S4, bacterial/organelle type [Methylomicrobium
album BG8]
gi|380885080|gb|EIC30957.1| ribosomal protein S4, bacterial/organelle type [Methylomicrobium
album BG8]
Length = 206
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS +SL+ KCKLD RPGQHG +R SDY Q R KQ
Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSRGKSLEGKCKLDQRPGQHG-TKRTRNSDYAMQLRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+++R+YG+LE+QF Y+ + KG TGE +L LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 RLRRIYGVLERQFSNYYKIADQKKGATGENLLNLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AFL+N +N+ SY++ PGD+ISV+EKAKKQ RI ++L ++E SW+ V++K M
Sbjct: 120 HKAFLINGATINVPSYQVSPGDVISVKEKAKKQQRIIDALTVTEQYGFPSWVEVNSKTMT 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F S P+R++ +DIN+ L
Sbjct: 180 GTFTSLPDRADLGSDINEQL 199
>gi|330505183|ref|YP_004382052.1| 30S ribosomal protein S4 [Pseudomonas mendocina NK-01]
gi|328919469|gb|AEB60300.1| 30S ribosomal protein S4 [Pseudomonas mendocina NK-01]
Length = 206
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMG+ +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAASQKGATGENLLQLLECRLDNVVYRMGYGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ SY++K GD+++VREK+K Q RIA +LEL W+ VDA+K
Sbjct: 120 HKAISVNGQTVNVPSYQVKAGDVVAVREKSKNQLRIAQALELCAQRGRVEWVEVDAEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|307248854|ref|ZP_07530867.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|307262278|ref|ZP_07543927.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306854781|gb|EFM86971.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|306868041|gb|EFM99868.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 204
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 118/198 (59%), Positives = 150/198 (75%), Gaps = 3/198 (1%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCK--LDLRPGQHGRISGSRTSDYGYQFREKQKV 62
+GPK KL RREG DLFLKS R+++SKC+ LD+ PGQHG R SDYG Q REKQKV
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLREKQKV 59
Query: 63 KRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHR 122
+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+SH+
Sbjct: 60 RRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVSHK 119
Query: 123 AFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGV 182
+ +VN ++VNI SY++ D+++VREK+KKQ RI SLEL+ +W+ VDA KMEGV
Sbjct: 120 SIVVNGRVVNIPSYQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDATKMEGV 179
Query: 183 FKSEPNRSEFANDINDLL 200
FK P RS+ + DIN+ L
Sbjct: 180 FKRTPERSDLSADINEHL 197
>gi|146281194|ref|YP_001171347.1| 30S ribosomal protein S4 [Pseudomonas stutzeri A1501]
gi|172045574|sp|A4VHQ4.1|RS4_PSEU5 RecName: Full=30S ribosomal protein S4
gi|145569399|gb|ABP78505.1| ribosomal protein S4 [Pseudomonas stutzeri A1501]
Length = 206
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIETPPGVHGQRRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VNI SY++K GD+++VREK + Q RIA +LEL W+ VDA K
Sbjct: 120 HKSITVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDADKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|170723882|ref|YP_001751570.1| 30S ribosomal protein S4 [Pseudomonas putida W619]
gi|226699108|sp|B1JAI8.1|RS4_PSEPW RecName: Full=30S ribosomal protein S4
gi|169761885|gb|ACA75201.1| ribosomal protein S4 [Pseudomonas putida W619]
Length = 206
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ A KG TGE +L+LLE R DNVVYRMGF STRSE+RQL+S
Sbjct: 60 KVRRIYGVLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY+++PGD+++VREK+ Q RI +LEL W+ VD+ K
Sbjct: 120 HKAISVNGKTVNIPSYQVRPGDVVAVREKSSNQLRIVQALELCAQRGRVEWVDVDSAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P R + + DIN+ L
Sbjct: 180 GVFKNVPARGDLSADINENL 199
>gi|146308899|ref|YP_001189364.1| 30S ribosomal protein S4 [Pseudomonas mendocina ymp]
gi|399522429|ref|ZP_10763093.1| 30S ribosomal protein S4 [Pseudomonas pseudoalcaligenes CECT 5344]
gi|421503846|ref|ZP_15950791.1| 30S ribosomal protein S4 [Pseudomonas mendocina DLHK]
gi|172046040|sp|A4XZ66.1|RS4_PSEMY RecName: Full=30S ribosomal protein S4
gi|145577100|gb|ABP86632.1| SSU ribosomal protein S4P [Pseudomonas mendocina ymp]
gi|399109863|emb|CCH39654.1| 30S ribosomal protein S4 [Pseudomonas pseudoalcaligenes CECT 5344]
gi|400345350|gb|EJO93715.1| 30S ribosomal protein S4 [Pseudomonas mendocina DLHK]
Length = 206
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 148/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAASQKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VN+ SY++K GD+++VREK+K Q RIA +LEL W+ VDA+K
Sbjct: 120 HKAISVNGQTVNVPSYQVKAGDVVAVREKSKNQLRIAQALELCAQRGRVEWVEVDAEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P R + + DIN+ L
Sbjct: 180 GVFKNVPARGDLSADINESL 199
>gi|392422638|ref|YP_006459242.1| 30S ribosomal protein S4 [Pseudomonas stutzeri CCUG 29243]
gi|421616515|ref|ZP_16057522.1| 30S ribosomal protein S4 [Pseudomonas stutzeri KOS6]
gi|431928666|ref|YP_007241700.1| 30S ribosomal protein S4 [Pseudomonas stutzeri RCH2]
gi|452750439|ref|ZP_21950188.1| 30S ribosomal protein S4 [Pseudomonas stutzeri NF13]
gi|390984826|gb|AFM34819.1| 30S ribosomal protein S4 [Pseudomonas stutzeri CCUG 29243]
gi|409781559|gb|EKN61150.1| 30S ribosomal protein S4 [Pseudomonas stutzeri KOS6]
gi|431826953|gb|AGA88070.1| SSU ribosomal protein S4P [Pseudomonas stutzeri RCH2]
gi|452005696|gb|EMD97979.1| 30S ribosomal protein S4 [Pseudomonas stutzeri NF13]
Length = 206
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIETPPGVHGQRRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VNI SY++K GD+++VREK + Q RIA +LEL W+ VDA K
Sbjct: 120 HKSISVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDADKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|397688457|ref|YP_006525776.1| 30S ribosomal protein S4 [Pseudomonas stutzeri DSM 10701]
gi|395810013|gb|AFN79418.1| 30S ribosomal protein S4 [Pseudomonas stutzeri DSM 10701]
Length = 206
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIETPPGIHGQRRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VNI SY++K GD+++VREK + Q RIA +LEL W+ VD K
Sbjct: 120 HKSITVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDTDKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P RS+ + DIN+ L
Sbjct: 180 GVFKSVPARSDLSADINENL 199
>gi|406915533|gb|EKD54604.1| hypothetical protein ACD_60C00063G0009 [uncultured bacterium]
Length = 206
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP+ KL RREG DL L S R+LD+KCKLD PG HG G R ++YG Q REKQ
Sbjct: 1 MARYTGPRCKLARREGADLSLISGVRALDTKCKLDAAPGMHGGRKG-RATEYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QF YF + ARLKG TGE +L+LLESR DNVVYRMGF STR+EARQL++
Sbjct: 60 KVRRIYGILERQFSNYFKKAARLKGSTGENLLRLLESRLDNVVYRMGFGSTRAEARQLVN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A LVN K VNI SY + PGD++S+RE+AK+Q RI ++ L++ SWI +DA +
Sbjct: 120 HCAVLVNGKNVNIPSYTVSPGDVVSIRERAKQQLRIQGAVALAQARPACSWIEIDANALS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ DI + L
Sbjct: 180 GTFKSFPERSDLPTDIYEKL 199
>gi|409427728|ref|ZP_11262221.1| 30S ribosomal protein S4 [Pseudomonas sp. HYS]
Length = 206
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAASKKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VN+ SY+++PGD+++VREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISVNGKTVNVPSYQVRPGDVVAVREKSLNQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|404398237|ref|ZP_10989821.1| 30S ribosomal protein S4 [Pseudomonas fuscovaginae UPB0736]
Length = 206
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 148/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN K VN+ SY+++ GD++++REKAK Q RI +LEL W+ VDA+K
Sbjct: 120 HKSISVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALELCAQRGRVEWVEVDAEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|339492771|ref|YP_004713064.1| 30S ribosomal protein S4 [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800143|gb|AEJ03975.1| 30S ribosomal protein S4 [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 206
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIETPPGVHGQRRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VNI SY++K GD+++VREK + Q RIA +LEL W+ VD K
Sbjct: 120 HKSITVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDTDKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|429331914|ref|ZP_19212654.1| 30S ribosomal protein S4 [Pseudomonas putida CSV86]
gi|428763425|gb|EKX85600.1| 30S ribosomal protein S4 [Pseudomonas putida CSV86]
Length = 206
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAAAKKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +N K VN+ SY+++PGD+++VREK+ Q RI +LEL W+ VDA K
Sbjct: 120 HKAISINGKTVNVPSYQVRPGDVVAVREKSANQLRIVQALELCAQRGRVEWVDVDAAKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|345877721|ref|ZP_08829460.1| hypothetical protein Rifp1Sym_bd00170 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225251|gb|EGV51615.1| hypothetical protein Rifp1Sym_bd00170 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 223
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS RSLDSKC ++ PGQ G R SDYG Q REKQ
Sbjct: 18 MARYIGPKCKLSRREGTDLFLKSRMRSLDSKCNMEKVPGQSGD-RRRRISDYGLQLREKQ 76
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG++E QFR Y+ A+ KG TGE +L+ LE+R DNVVYRMGF STR+EARQL+S
Sbjct: 77 KVRRIYGVMENQFRNYYKAAAQAKGATGENLLQALETRLDNVVYRMGFGSTRAEARQLVS 136
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN +VN+ASYKIK D +S+REKAKKQ RI +L L+E W+ VD K M+
Sbjct: 137 HKAIEVNGSVVNVASYKIKAEDEVSIREKAKKQVRIQGALSLAEQYGFVDWVEVDPKAMK 196
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ +IN+ L
Sbjct: 197 GVFKRVPDRADLPAEINEQL 216
>gi|33519682|ref|NP_878514.1| 30S ribosomal protein S4 [Candidatus Blochmannia floridanus]
gi|41017831|sp|Q7VQC4.1|RS4_BLOFL RecName: Full=30S ribosomal protein S4
gi|33517345|emb|CAD83730.1| 30S ribosomal subunit protein S4 [Candidatus Blochmannia
floridanus]
Length = 207
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/203 (59%), Positives = 151/203 (74%), Gaps = 6/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RRE DLFLKS RS+DSKC+ D PGQH I SR SDYG Q REKQ
Sbjct: 1 MAKYVGPKLKLSRRENTDLFLKSGIRSIDSKCQFDHAPGQHS-IRKSRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILE QF Y+ + A +KG TGEI+L+LLESR DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVKRMYGILENQFANYYRKSASMKGNTGEILLQLLESRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEH---STPFSWITVDAK 177
H++ +VN IVNIASY++ P +I V +K+ Q+RI +LE++E S P WI VD+
Sbjct: 120 HKSIIVNDCIVNIASYQVVPNTVIQVYKKSHNQSRIYAALEIAEQQRESVP--WIEVDSA 177
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K++G+FK P RSE + +IN+ L
Sbjct: 178 KLKGIFKRRPERSELSANINEHL 200
>gi|331004909|ref|ZP_08328325.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC1989]
gi|330421296|gb|EGG95546.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC1989]
Length = 205
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/200 (59%), Positives = 146/200 (73%), Gaps = 2/200 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS RSLDSKCKL+ PG HG + R SDYG Q REKQ
Sbjct: 1 MARYLGPTCKLARREGTDLFLKSGVRSLDSKCKLETAPGVHG-VRRGRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R YG+LEKQFR Y+ E AR KG TGE +LKLLE+R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRTYGVLEKQFRAYYKEAARRKGATGENLLKLLETRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN VNI SY++K D+IS+REKAK Q RI ++L+L+ W+ V A K+E
Sbjct: 120 HKSILVNGSTVNIPSYQVKAEDVISIREKAKNQLRIKSALDLAAQRD-VEWVEVSAAKLE 178
Query: 181 GVFKSEPNRSEFANDINDLL 200
G K P+R + +IN+ L
Sbjct: 179 GTLKRVPDREDLPAEINENL 198
>gi|15617094|ref|NP_240307.1| 30S ribosomal protein S4 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681846|ref|YP_002468232.1| 30S ribosomal protein S4 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682401|ref|YP_002468785.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471551|ref|ZP_05635550.1| 30S ribosomal protein S4 [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226292|ref|YP_005617455.1| 30S ribosomal protein S4 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384226786|ref|YP_005618537.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|384227346|ref|YP_005619096.1| 30S ribosomal protein S4 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|414562850|ref|YP_005618041.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|11387058|sp|P57567.1|RS4_BUCAI RecName: Full=30S ribosomal protein S4
gi|254764574|sp|B8D9S3.1|RS4_BUCA5 RecName: Full=30S ribosomal protein S4
gi|254764575|sp|B8D825.1|RS4_BUCAT RecName: Full=30S ribosomal protein S4
gi|25294492|pir||A84988 30S ribosomal protein S4 [imported] - Buchnera sp. (strain APS)
gi|10039159|dbj|BAB13193.1| 30S ribosomal protein S4 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219622134|gb|ACL30290.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624689|gb|ACL30844.1| 30S ribosomal protein S4 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086222|gb|ADP66304.1| 30S ribosomal protein S4 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086799|gb|ADP66880.1| 30S ribosomal protein S4 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087386|gb|ADP67466.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087883|gb|ADP67962.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 206
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DLFLKS RS++SKCKL+ PGQHG I R SDY Q REKQ
Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGLRSIESKCKLEQPPGQHG-IRKPRLSDYAIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF+ Y+ A LKG TG +L+LLESR DNVVYRMGF TRSE+RQLI+
Sbjct: 60 KVRRLYGVLERQFKIYYKLAASLKGNTGANLLQLLESRLDNVVYRMGFGCTRSESRQLIN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN K+VNIASY++ P D IS+R K+K Q+RI +LEL E W+ V++ KME
Sbjct: 120 HKSIMVNNKVVNIASYQVSPNDQISIRNKSKNQSRIKAALELVEQREKPIWLEVNSTKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P RS+ + +IN+ L
Sbjct: 180 GIFKRFPERSDLSAEINEYL 199
>gi|388547656|ref|ZP_10150918.1| 30S ribosomal protein S4 [Pseudomonas sp. M47T1]
gi|388274256|gb|EIK93856.1| 30S ribosomal protein S4 [Pseudomonas sp. M47T1]
Length = 206
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VN+ SY+++ GD+++VREK+K Q RI +LEL W+ VD +K
Sbjct: 120 HKAISVNGKTVNVPSYQVRQGDVVAVREKSKNQLRIVQALELCAQRGRVEWVDVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|333898863|ref|YP_004472736.1| 30S ribosomal protein S4 [Pseudomonas fulva 12-X]
gi|333114128|gb|AEF20642.1| ribosomal protein S4 [Pseudomonas fulva 12-X]
Length = 206
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAASQKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VN+ SY++K GD+++VREK+K Q RI +LEL W+ VD +K
Sbjct: 120 HKAISVNGKTVNVPSYQVKAGDVVAVREKSKNQLRIVQALELCAQRGRVEWVDVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P R + + DIN+ L
Sbjct: 180 GVFKSVPVRGDLSADINESL 199
>gi|27904918|ref|NP_778044.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|29611835|sp|P59491.1|RS4_BUCBP RecName: Full=30S ribosomal protein S4
gi|27904316|gb|AAO27149.1| ribosomal protein S4 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 206
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KLCRRE DLF KS R++DSKCK D PGQHG R SDYG Q REKQ
Sbjct: 1 MAKYLGPKLKLCRRENTDLFFKSGIRAIDSKCKFDQFPGQHGS-KRQRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE QFR Y+ +RLKG TGE +L LLE+R DNV YR+GF STR+EARQL+S
Sbjct: 60 KVRRLYGILEAQFRNYYKHASRLKGNTGENLLFLLENRLDNVTYRIGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN VNI SY++ PGD+IS+ + +K Q+RI +LELSE WI VD KM+
Sbjct: 120 HKSILVNNCTVNIPSYQVSPGDVISIHKNSKLQSRIKAALELSEQRETPIWIEVDFNKMQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G++K P RS+ + +IN+ L
Sbjct: 180 GIYKRVPERSDLSAEINEYL 199
>gi|171462905|ref|YP_001797018.1| DNA-directed RNA polymerase subunit alpha [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|238692836|sp|B1XSS7.1|RPOA_POLNS RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|171192443|gb|ACB43404.1| DNA-directed RNA polymerase, alpha subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 326
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/307 (46%), Positives = 189/307 (61%), Gaps = 77/307 (25%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+II V+ L +N AKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 TNLLKPKIISVEALTANQAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVAIAGVV 62
Query: 257 HEYSSLEGVQEDII-----------------DIILNLK----GVI----------LKLYN 285
HEYS+L+GVQED++ ++I+NL+ GV+ +++ N
Sbjct: 63 HEYSTLDGVQEDVVNLLLNLKGIVFKLQSRDEVIINLRKEGPGVVTAKDIDLPHDVEIMN 122
Query: 286 RDYAILNLKKFGKC------------------------------VVLASDIELLSDI--- 312
D+ I +L GK +VL + +S +
Sbjct: 123 PDHVIAHLSAGGKLDMQIKVEKGRGYVPGNVRQYNDEATKIIGHIVLDASFSPVSRVSYA 182
Query: 313 -------ELVNPNHIIAHLSDN-----EEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
+ + + ++ + N EEAIRQ+A +LVDQL VFAALE++ V +L S
Sbjct: 183 VESARVEQRTDLDRLVMTIETNGVLSPEEAIRQAASILVDQLVVFAALESSEVSGDLAPS 242
Query: 361 LEK-VDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419
VDP+L+RPVDDLELTVRSANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIK
Sbjct: 243 RSSMVDPMLMRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIK 302
Query: 420 EILASRG 426
++LA+RG
Sbjct: 303 DVLAARG 309
>gi|149912289|ref|ZP_01900860.1| DNA-directed RNA polymerase alpha subunit [Moritella sp. PE36]
gi|149804634|gb|EDM64693.1| DNA-directed RNA polymerase alpha subunit [Moritella sp. PE36]
Length = 328
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/308 (46%), Positives = 179/308 (58%), Gaps = 79/308 (25%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+ + L+PR++D++ + S AKV +EP ERG+G+TLGNALRR+LLSSM GCA TEV I G
Sbjct: 5 VTEFLRPRLVDIEQISSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
LHEYSS EGVQED+++I+LNLKG+ +KL +D A+L L K G VLA DI D+E++
Sbjct: 65 LHEYSSKEGVQEDVLEILLNLKGLAIKLEGKDEALLTLTKSGTGPVLAGDITHDGDVEII 124
Query: 316 NPNHIIAHL--------------------------SDNEEAIRQSARVLVDQL------- 342
NP H+I +L SD+EE R R+LVD
Sbjct: 125 NPEHVICNLTGQADISMRIRVAKGRGYVPASTRIQSDDEE--RPIGRLLVDAAFSPVSRI 182
Query: 343 --NVFAA-------LENTPVKKELDSSLEK------------------------------ 363
NV AA L+ + E D +L+
Sbjct: 183 AYNVEAARVEQRTNLDKLVIDMETDGTLDPEEAIRRAATILAEQLDAFVDLRDVTEPEQK 242
Query: 364 -----VDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEI 418
DPILLRPVDDLELTVRSANCLKAE IH IGDL+QR+E ELL+TPNLG+KSL EI
Sbjct: 243 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 302
Query: 419 KEILASRG 426
K++LASRG
Sbjct: 303 KDVLASRG 310
>gi|77461277|ref|YP_350784.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf0-1]
gi|90101709|sp|Q3K611.1|RS4_PSEPF RecName: Full=30S ribosomal protein S4
gi|77385280|gb|ABA76793.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf0-1]
Length = 206
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ SY+++ GD+++VREKAK Q RI +LEL W+ VDA+K
Sbjct: 120 HKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALELCAQRGRVEWVEVDAEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|418292876|ref|ZP_12904806.1| 30S ribosomal protein S4 [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064289|gb|EHY77032.1| 30S ribosomal protein S4 [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 206
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+L+SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIETPPGVHGQRRG-RLSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ SY++K GD+++VREK + Q RIA +LEL W+ VD K
Sbjct: 120 HKSISVNGQTVNVPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDTDKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINENL 199
>gi|71891998|ref|YP_277728.1| 30S ribosomal protein S4 [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|90101676|sp|Q493I5.1|RS4_BLOPB RecName: Full=30S ribosomal protein S4
gi|71796104|gb|AAZ40855.1| 30S ribosomal subunit protein S4 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 207
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 151/201 (75%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DLFLKS R++DSKCKLD PGQH + SR SDYG Q REKQ
Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGIRAIDSKCKLDQPPGQHN-MRKSRFSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QF Y+ AR+KG TGE +LKLLESR DN VYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFSNYYKRAARIKGNTGENLLKLLESRLDNTVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHS-TPFSWITVDAKKM 179
H++ +V +IVNIASY++ P +I + +K+ KQ+RI SLELSE +WI VD K+
Sbjct: 120 HKSIMVENRIVNIASYQVVPNTVIKIHKKSHKQSRIRASLELSEQQREKLAWIEVDPIKL 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+G+FK P RSE + +I++ L
Sbjct: 180 QGLFKRYPERSELSANIDEHL 200
>gi|424795701|ref|ZP_18221524.1| 30S ribosomal protein S4 [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433679073|ref|ZP_20510855.1| 30S ribosomal protein S4 [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440732458|ref|ZP_20912387.1| 30S ribosomal protein S4 [Xanthomonas translucens DAR61454]
gi|422795359|gb|EKU24069.1| 30S ribosomal protein S4 [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430815805|emb|CCP41400.1| 30S ribosomal protein S4 [Xanthomonas translucens pv. translucens
DSM 18974]
gi|440368739|gb|ELQ05764.1| 30S ribosomal protein S4 [Xanthomonas translucens DAR61454]
Length = 209
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/202 (57%), Positives = 150/202 (74%), Gaps = 2/202 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRIS-GSRTSDYGYQFREK 59
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + + SDY Q REK
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGATARKGKLSDYATQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QFR Y+ + + KG TGE +L+LLE+R DNVVYRMGF+ TR ARQL+
Sbjct: 61 QKVKRIYGLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE-HSTPFSWITVDAKK 178
SHR LVN K VN+ASY++K GD I++ EKA+KQ R+ +L ++E H SW+ VD+KK
Sbjct: 121 SHRGVLVNGKSVNLASYQVKAGDAITLSEKAQKQLRVQEALTVAETHDLNPSWVEVDSKK 180
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
G+FK+ P+R++ DIN+ L
Sbjct: 181 FSGIFKAVPDRADLPADINEAL 202
>gi|380510014|ref|ZP_09853421.1| 30S ribosomal protein S4 [Xanthomonas sacchari NCPPB 4393]
Length = 209
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/202 (57%), Positives = 150/202 (74%), Gaps = 2/202 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRIS-GSRTSDYGYQFREK 59
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + + SDY Q REK
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGATARKGKLSDYATQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QFR Y+ + + KG TGE +L+LLE+R DNVVYRMGF+ TR ARQL+
Sbjct: 61 QKVKRIYGLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE-HSTPFSWITVDAKK 178
SHR LVN K VN+ASY++K GD I++ EKA+KQ R+ +L ++E H SW+ VD+KK
Sbjct: 121 SHRGVLVNGKSVNLASYQVKAGDAIALSEKAQKQLRVQEALTVAETHDLNPSWVEVDSKK 180
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
G+FK+ P+R++ DIN+ L
Sbjct: 181 FSGIFKAVPDRADLPADINEAL 202
>gi|90416840|ref|ZP_01224769.1| 30S ribosomal protein S4 [gamma proteobacterium HTCC2207]
gi|90331187|gb|EAS46431.1| 30S ribosomal protein S4 [gamma proteobacterium HTCC2207]
Length = 206
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS R L+SKC+ D PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLESKCRADSAPGQHGQRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + AR KG TGE +L LLE R DNVVYRMGF +TR+E+RQL++
Sbjct: 60 KVRRIYGVLEKQFRNYYRDAARQKGNTGENLLTLLERRLDNVVYRMGFGATRAESRQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H + +VN + VNI S+K++ GD++ +REK+KKQ R+ +L+L+ W+ VD+ KME
Sbjct: 120 HNSIVVNGQKVNIPSFKVQEGDVVGLREKSKKQLRVQTALQLAAQRGEVEWMNVDSSKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F P+RS+ +IN+ L
Sbjct: 180 GTFTRNPDRSDLPAEINENL 199
>gi|379009439|ref|YP_005267252.1| 30S ribosomal protein S4 [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375157963|gb|AFA41029.1| 30S ribosomal subunit protein S4 [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 206
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLF KS R +++KCK+D PGQHG I R SDYG Q REKQ
Sbjct: 1 MARYLGPMLKLSRREGTDLFFKSGIRVIETKCKIDQLPGQHG-IKKPRLSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILEKQF+RY+ + +R+KG TGE +LK+LE+R DN+VYR+GF +TR+E+RQLI
Sbjct: 60 KVRRLYGILEKQFKRYYKKASRMKGNTGENLLKILENRLDNIVYRIGFGTTRAESRQLIV 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VNKKI+NI SY++K D++ + +KKQ+RI S+E+SE SWI VD KM+
Sbjct: 120 HKSITVNKKIINIPSYQLKINDVVQIHPNSKKQSRIQASIEISEQREKQSWIEVDLIKMQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K P RSE +++IN+ L
Sbjct: 180 GILKKFPERSELSSEINEHL 199
>gi|344941032|ref|ZP_08780320.1| ribosomal protein S4 [Methylobacter tundripaludum SV96]
gi|344262224|gb|EGW22495.1| ribosomal protein S4 [Methylobacter tundripaludum SV96]
Length = 206
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS +SL++KCKLD RPGQHG +R+SDY Q R KQ
Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSRGKSLENKCKLDQRPGQHG-TKRARSSDYAIQLRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+++R+YGILEKQFR Y+ KG TG+ +L LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 RLRRIYGILEKQFRNYYKTADLKKGATGQNLLNLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN ++N+ SY++ PGD+++VREKAKKQ RI ++L ++E SW+ V++K M
Sbjct: 120 HKSIQVNNVLINVPSYQVSPGDVLTVREKAKKQQRIVDALVVTEQYGFPSWVEVNSKSMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F S P+R + +DIN+ L
Sbjct: 180 GTFSSLPDRVDLGSDINEQL 199
>gi|358010445|ref|ZP_09142255.1| 30S ribosomal protein S4 [Acinetobacter sp. P8-3-8]
Length = 208
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/201 (58%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKAAKAPGQHGGARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ SWI VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGTASWIEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|28867878|ref|NP_790497.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato str.
DC3000]
gi|66047752|ref|YP_237593.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae B728a]
gi|71734874|ref|YP_276682.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. phaseolicola
1448A]
gi|213969238|ref|ZP_03397376.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato T1]
gi|289623825|ref|ZP_06456779.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289648918|ref|ZP_06480261.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str.
2250]
gi|289675512|ref|ZP_06496402.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae FF5]
gi|301381745|ref|ZP_07230163.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato Max13]
gi|302061055|ref|ZP_07252596.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato K40]
gi|302130804|ref|ZP_07256794.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|302189301|ref|ZP_07265974.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae 642]
gi|410091914|ref|ZP_11288460.1| 30S ribosomal protein S4 [Pseudomonas viridiflava UASWS0038]
gi|416018891|ref|ZP_11565804.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str.
B076]
gi|416021782|ref|ZP_11567073.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422296664|ref|ZP_16384330.1| 30S ribosomal protein S4 [Pseudomonas avellanae BPIC 631]
gi|422405098|ref|ZP_16482145.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422584595|ref|ZP_16659700.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|422591740|ref|ZP_16666378.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|422597974|ref|ZP_16672241.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422608281|ref|ZP_16680266.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. mori str.
301020]
gi|422619341|ref|ZP_16688032.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. japonica str.
M301072]
gi|422631219|ref|ZP_16696408.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. pisi str. 1704B]
gi|422640783|ref|ZP_16704209.1| 30S ribosomal protein S4 [Pseudomonas syringae Cit 7]
gi|422648973|ref|ZP_16712087.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|422653847|ref|ZP_16716604.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|422659567|ref|ZP_16721991.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|422672058|ref|ZP_16731423.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aceris str.
M302273]
gi|424069643|ref|ZP_17807089.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424074139|ref|ZP_17811550.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440723607|ref|ZP_20903969.1| 30S ribosomal protein S4 [Pseudomonas syringae BRIP34876]
gi|440726927|ref|ZP_20907170.1| 30S ribosomal protein S4 [Pseudomonas syringae BRIP34881]
gi|440742720|ref|ZP_20922043.1| 30S ribosomal protein S4 [Pseudomonas syringae BRIP39023]
gi|443642047|ref|ZP_21125897.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae B64]
gi|37999395|sp|Q889U7.1|RS4_PSESM RecName: Full=30S ribosomal protein S4
gi|81307873|sp|Q4ZMR7.1|RS4_PSEU2 RecName: Full=30S ribosomal protein S4
gi|90101706|sp|Q48D60.1|RS4_PSE14 RecName: Full=30S ribosomal protein S4
gi|28851114|gb|AAO54192.1| ribosomal protein S4 [Pseudomonas syringae pv. tomato str. DC3000]
gi|63258459|gb|AAY39555.1| SSU ribosomal protein S4P [Pseudomonas syringae pv. syringae B728a]
gi|71555427|gb|AAZ34638.1| ribosomal protein S4 [Pseudomonas syringae pv. phaseolicola 1448A]
gi|213925916|gb|EEB59473.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato T1]
gi|298156384|gb|EFH97482.1| SSU ribosomal protein S4p (S9e) [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322298|gb|EFW78392.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str.
B076]
gi|320331956|gb|EFW87892.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330869407|gb|EGH04116.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330879399|gb|EGH13548.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330879418|gb|EGH13567.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330891908|gb|EGH24569.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. mori str.
301020]
gi|330899712|gb|EGH31131.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. japonica str.
M301072]
gi|330940914|gb|EGH43865.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. pisi str. 1704B]
gi|330953173|gb|EGH53433.1| 30S ribosomal protein S4 [Pseudomonas syringae Cit 7]
gi|330962501|gb|EGH62761.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330966887|gb|EGH67147.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330969797|gb|EGH69863.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aceris str.
M302273]
gi|330988258|gb|EGH86361.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331018184|gb|EGH98240.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|407992142|gb|EKG33831.1| 30S ribosomal protein S4 [Pseudomonas avellanae BPIC 631]
gi|407994315|gb|EKG34900.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407994896|gb|EKG35450.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|409760773|gb|EKN45893.1| 30S ribosomal protein S4 [Pseudomonas viridiflava UASWS0038]
gi|440359384|gb|ELP96696.1| 30S ribosomal protein S4 [Pseudomonas syringae BRIP34876]
gi|440364977|gb|ELQ02093.1| 30S ribosomal protein S4 [Pseudomonas syringae BRIP34881]
gi|440377024|gb|ELQ13681.1| 30S ribosomal protein S4 [Pseudomonas syringae BRIP39023]
gi|443282064|gb|ELS41069.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae B64]
Length = 206
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN K VN+ SY+++ GD++++REKAK Q RI +L+L W+ VD +K
Sbjct: 120 HKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|244539092|dbj|BAH83135.1| 30S ribosomal protein S4 [Candidatus Ishikawaella capsulata Mpkobe]
Length = 206
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y GPK +L RREGIDLFLKS +++DSKCK+D PGQHG I +R S+YG Q REKQ
Sbjct: 1 MAKYSGPKLRLSRREGIDLFLKSGVQTIDSKCKIDKIPGQHG-IRKNRMSEYGMQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ + +RLKG TGE +L LLESR DNVVYR+GF TR+EARQL++
Sbjct: 60 KVRRLYGILERQFRNYYKKASRLKGNTGENLLSLLESRLDNVVYRIGFGCTRAEARQLVN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR L+N + VNI SY+I P DIIS++EK++ RI +L+L+E SW+ ++ KME
Sbjct: 120 HRCILINNRAVNIPSYQISPHDIISIQEKSQNHQRIKVALDLAEQREKPSWLEINRNKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K +P R++ + DIN+ L
Sbjct: 180 GICKRKPERTDISADINENL 199
>gi|229592879|ref|YP_002874998.1| 30S ribosomal protein S4 [Pseudomonas fluorescens SBW25]
gi|312963346|ref|ZP_07777829.1| 30S ribosomal protein S4 [Pseudomonas fluorescens WH6]
gi|330812052|ref|YP_004356514.1| 30S ribosomal protein S4 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378953159|ref|YP_005210647.1| protein RpsD [Pseudomonas fluorescens F113]
gi|387895903|ref|YP_006326200.1| 30S ribosomal protein S4 [Pseudomonas fluorescens A506]
gi|388466550|ref|ZP_10140760.1| ribosomal protein S4 [Pseudomonas synxantha BG33R]
gi|389681913|ref|ZP_10173257.1| ribosomal protein S4 [Pseudomonas chlororaphis O6]
gi|395651544|ref|ZP_10439394.1| 30S ribosomal protein S4 [Pseudomonas extremaustralis 14-3 substr.
14-3b]
gi|398838631|ref|ZP_10595905.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM102]
gi|398852132|ref|ZP_10608801.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM80]
gi|398860784|ref|ZP_10616428.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM79]
gi|398868932|ref|ZP_10624321.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM78]
gi|398874819|ref|ZP_10630019.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM74]
gi|398891099|ref|ZP_10644539.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM55]
gi|398901729|ref|ZP_10650520.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM50]
gi|398910799|ref|ZP_10655215.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM49]
gi|398925576|ref|ZP_10661950.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM48]
gi|398948387|ref|ZP_10672775.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM33]
gi|398967333|ref|ZP_10681859.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM30]
gi|398977381|ref|ZP_10687098.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM25]
gi|398990506|ref|ZP_10693688.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM24]
gi|398999062|ref|ZP_10701815.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM18]
gi|399006317|ref|ZP_10708844.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM17]
gi|399015932|ref|ZP_10718183.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM16]
gi|408479264|ref|ZP_11185483.1| 30S ribosomal protein S4 [Pseudomonas sp. R81]
gi|423097620|ref|ZP_17085416.1| ribosomal protein S4 [Pseudomonas fluorescens Q2-87]
gi|423693838|ref|ZP_17668358.1| ribosomal protein S4 [Pseudomonas fluorescens SS101]
gi|423699611|ref|ZP_17674101.1| ribosomal protein S4 [Pseudomonas fluorescens Q8r1-96]
gi|424925181|ref|ZP_18348542.1| ribosomal protein S4 [Pseudomonas fluorescens R124]
gi|425901856|ref|ZP_18878447.1| ribosomal protein S4 [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|426411756|ref|YP_007031855.1| 30S ribosomal protein S4 [Pseudomonas sp. UW4]
gi|259495288|sp|C3K2V2.1|RS4_PSEFS RecName: Full=30S ribosomal protein S4
gi|229364745|emb|CAY52725.1| 30S ribosomal protein S4 [Pseudomonas fluorescens SBW25]
gi|311282426|gb|EFQ61024.1| 30S ribosomal protein S4 [Pseudomonas fluorescens WH6]
gi|327380160|gb|AEA71510.1| 30S ribosomal protein S4 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359763173|gb|AEV65252.1| RpsD [Pseudomonas fluorescens F113]
gi|387161330|gb|AFJ56529.1| ribosomal protein S4 [Pseudomonas fluorescens A506]
gi|387997230|gb|EIK58560.1| ribosomal protein S4 [Pseudomonas fluorescens Q8r1-96]
gi|387998243|gb|EIK59572.1| ribosomal protein S4 [Pseudomonas fluorescens SS101]
gi|388010130|gb|EIK71317.1| ribosomal protein S4 [Pseudomonas synxantha BG33R]
gi|388554448|gb|EIM17697.1| ribosomal protein S4 [Pseudomonas chlororaphis O6]
gi|397887461|gb|EJL03944.1| ribosomal protein S4 [Pseudomonas fluorescens Q2-87]
gi|397892881|gb|EJL09357.1| ribosomal protein S4 [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398106808|gb|EJL96824.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM16]
gi|398115502|gb|EJM05284.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM102]
gi|398122483|gb|EJM12075.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM17]
gi|398132681|gb|EJM21943.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM18]
gi|398138125|gb|EJM27155.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM25]
gi|398144108|gb|EJM32968.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM24]
gi|398144889|gb|EJM33701.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM30]
gi|398160781|gb|EJM49039.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM33]
gi|398171937|gb|EJM59825.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM48]
gi|398179340|gb|EJM66952.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM50]
gi|398185140|gb|EJM72557.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM49]
gi|398187334|gb|EJM74678.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM55]
gi|398194042|gb|EJM81127.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM74]
gi|398232193|gb|EJN18168.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM78]
gi|398234224|gb|EJN20107.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM79]
gi|398245008|gb|EJN30540.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM80]
gi|404306341|gb|EJZ60303.1| ribosomal protein S4 [Pseudomonas fluorescens R124]
gi|426269973|gb|AFY22050.1| 30S ribosomal protein S4 [Pseudomonas sp. UW4]
Length = 206
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ SY+++ GD+++VREKAK Q RI +L+L W+ VD +K
Sbjct: 120 HKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|410447274|ref|ZP_11301372.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86E]
gi|409979839|gb|EKO36595.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86E]
Length = 206
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP +L RREG DLFLKS RS++SKC ++ PG HG G R SDYG Q REKQ
Sbjct: 1 MARYRGPSLRLSRREGTDLFLKSGARSIESKCNMETAPGVHGLRRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ + ++ KG TGE +L LE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKKASKSKGNTGENLLSFLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF +N IVNI SY+++PGD + VREK+K Q RI ++L+L+ W+ VD+K ++
Sbjct: 120 HKAFHLNGSIVNIPSYQVQPGDELEVREKSKTQLRIKSALDLAGQREACEWLEVDSKTLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P+R++ + +IN+ L
Sbjct: 180 GVFKSVPDRTDLSAEINENL 199
>gi|407804478|ref|ZP_11151300.1| 30S ribosomal protein S4 [Alcanivorax sp. W11-5]
gi|407021576|gb|EKE33342.1| 30S ribosomal protein S4 [Alcanivorax sp. W11-5]
Length = 208
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/201 (59%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGR-ISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DLFLKS R LDSKCK + PG SR SDYG Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLDSKCKAEQAPGAAAANRRQSRLSDYGVQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LEKQFR Y+ + A KG TGE++L+LLE R DNVVYRMGF +TR+EARQL+
Sbjct: 61 QKVRRMYGVLEKQFRGYYKKAAGSKGATGEVLLQLLEGRLDNVVYRMGFGATRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHRA VN + VN+ASY+++PGD+++VREKAK Q R+ N++EL++ SW+ VD KK+
Sbjct: 121 SHRAITVNGQTVNVASYQVRPGDLVAVREKAKNQLRVKNAMELAQQRGFASWLEVDEKKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG K+ P R + +IN+ L
Sbjct: 181 EGTLKALPERIDLPAEINENL 201
>gi|270157887|ref|ZP_06186544.1| ribosomal protein S4 [Legionella longbeachae D-4968]
gi|289163854|ref|YP_003453992.1| 30S ribosomal protein S4 [Legionella longbeachae NSW150]
gi|269989912|gb|EEZ96166.1| ribosomal protein S4 [Legionella longbeachae D-4968]
gi|288857027|emb|CBJ10841.1| 30S ribosomal subunit protein S4 [Legionella longbeachae NSW150]
Length = 206
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 142/197 (72%), Gaps = 1/197 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL LKS R SKCK + PGQHG R ++YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHGD-KKPRLNNYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R YG+LEKQFR Y+ AR+KG TGE ++ LLE R DNVVYRMGF+STR+EARQL++
Sbjct: 60 KIRRFYGVLEKQFRGYYKMAARMKGATGENLMTLLERRLDNVVYRMGFASTRAEARQLVT 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN KIVN+ SY IKPGD+ISVR++AK Q RI +L LSE P W+TVD +
Sbjct: 120 HKAILVNDKIVNVPSYLIKPGDVISVRQRAKNQGRIQAALALSEQRVPCDWLTVDTSSFK 179
Query: 181 GVFKSEPNRSEFANDIN 197
G F + P ++ ++D N
Sbjct: 180 GTFSTAPTLTDLSSDYN 196
>gi|359428609|ref|ZP_09219639.1| 30S ribosomal protein S4 [Acinetobacter sp. NBRC 100985]
gi|358235795|dbj|GAB01178.1| 30S ribosomal protein S4 [Acinetobacter sp. NBRC 100985]
Length = 208
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +WI VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGTPAWIEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|395498924|ref|ZP_10430503.1| 30S ribosomal protein S4 [Pseudomonas sp. PAMC 25886]
gi|395797682|ref|ZP_10476970.1| 30S ribosomal protein S4 [Pseudomonas sp. Ag1]
gi|398878870|ref|ZP_10633975.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM67]
gi|398884982|ref|ZP_10639905.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM60]
gi|398935309|ref|ZP_10666397.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM41(2012)]
gi|398993733|ref|ZP_10696671.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM21]
gi|407368352|ref|ZP_11114884.1| 30S ribosomal protein S4 [Pseudomonas mandelii JR-1]
gi|421139053|ref|ZP_15599099.1| 30S ribosomal protein S4 [Pseudomonas fluorescens BBc6R8]
gi|440737879|ref|ZP_20917430.1| 30S ribosomal protein S4 [Pseudomonas fluorescens BRIP34879]
gi|447918570|ref|YP_007399138.1| 30S ribosomal protein S4 [Pseudomonas poae RE*1-1-14]
gi|395338050|gb|EJF69903.1| 30S ribosomal protein S4 [Pseudomonas sp. Ag1]
gi|398134076|gb|EJM23251.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM21]
gi|398169795|gb|EJM57765.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM41(2012)]
gi|398193262|gb|EJM80372.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM60]
gi|398197989|gb|EJM84957.1| ribosomal protein S4, bacterial/organelle type [Pseudomonas sp.
GM67]
gi|404509776|gb|EKA23700.1| 30S ribosomal protein S4 [Pseudomonas fluorescens BBc6R8]
gi|440381618|gb|ELQ18144.1| 30S ribosomal protein S4 [Pseudomonas fluorescens BRIP34879]
gi|445202433|gb|AGE27642.1| 30S ribosomal protein S4 [Pseudomonas poae RE*1-1-14]
Length = 206
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ SY+++ GD++++REKAK Q RI +L+L W+ VD +K
Sbjct: 120 HKSVSVNGQTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|389703887|ref|ZP_10185681.1| 30S ribosomal protein S4 [Acinetobacter sp. HA]
gi|388611269|gb|EIM40373.1| 30S ribosomal protein S4 [Acinetobacter sp. HA]
Length = 208
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/201 (58%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG GS+ S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGGARGSKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ SW+ VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPSWMEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|212218098|ref|YP_002304885.1| 30S ribosomal protein S4 [Coxiella burnetii CbuK_Q154]
gi|226697829|sp|B6J5F6.1|RS4_COXB1 RecName: Full=30S ribosomal protein S4
gi|212012360|gb|ACJ19740.1| SSU ribosomal protein S4P [Coxiella burnetii CbuK_Q154]
Length = 206
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 143/192 (74%), Gaps = 1/192 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK +L RRE DL LKS R++DSKC ++ PG H + G RT+DYG Q R KQ
Sbjct: 1 MARYLGPKCRLSRREKTDLQLKSGIRAIDSKCNIERIPGMHWQRRG-RTTDYGVQLRMKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+KR Y +LEKQF Y+ + RLKG TG+ +LKLLESR DNVVYRMGFS+TR+EARQLIS
Sbjct: 60 MIKRYYDVLEKQFANYYKQADRLKGSTGDNLLKLLESRLDNVVYRMGFSATRAEARQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI SY++KPGDII VR +AK Q RI +LEL++ P SWI VD KKM
Sbjct: 120 HKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLRIKGALELAQQRAPISWIEVDTKKMT 179
Query: 181 GVFKSEPNRSEF 192
G FK +P+ +E
Sbjct: 180 GTFKEQPDVAEL 191
>gi|440509792|ref|YP_007347228.1| 30S ribosomal protein S4 [Candidatus Blochmannia chromaiodes str.
640]
gi|440454005|gb|AGC03497.1| 30S ribosomal protein S4 [Candidatus Blochmannia chromaiodes str.
640]
Length = 207
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 150/201 (74%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DLFLKS R++DSKCK+D PGQH + SR SDYG Q REKQ
Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGIRAIDSKCKIDQPPGQHN-MRKSRFSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QF Y+ AR+KG TGE +LKLLESR DN VYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFSNYYKRAARIKGNTGENLLKLLESRLDNTVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHS-TPFSWITVDAKKM 179
H++ +V +IVNIASY++ P +I + K+ KQ+RI SLELSE +WI VD ++
Sbjct: 120 HKSIMVENRIVNIASYQVVPNTVIKIHTKSHKQSRIRASLELSEQQREKLAWIEVDPIRL 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+G+FK P RSE + +I++ L
Sbjct: 180 QGLFKRYPERSELSANIDEHL 200
>gi|70732860|ref|YP_262627.1| 30S ribosomal protein S4 [Pseudomonas protegens Pf-5]
gi|90101707|sp|Q4K556.1|RS4_PSEF5 RecName: Full=30S ribosomal protein S4
gi|68347159|gb|AAY94765.1| ribosomal protein S4 [Pseudomonas protegens Pf-5]
Length = 206
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ SY+++ GD+++VREKAK Q RI +L+L W+ VD +K
Sbjct: 120 HKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|422666226|ref|ZP_16726095.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|330976664|gb|EGH76707.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 206
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKKAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN K VN+ SY+++ GD++++REKAK Q RI +L+L W+ VD +K
Sbjct: 120 HKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|257483209|ref|ZP_05637250.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|422683101|ref|ZP_16741363.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|331012437|gb|EGH92493.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 206
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN K VN+ SY+++ GD++++REKAK Q RI +L+L W+ VD +
Sbjct: 120 HKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTENKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|402698209|ref|ZP_10846188.1| 30S ribosomal protein S4 [Pseudomonas fragi A22]
Length = 206
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 111/200 (55%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+++SKC ++ PG HG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRRG-RQSDYGTQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ + A KG TGE +L+LLE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVRRIYGVLERQFSGYYKQAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + VN+ SY+++ GD++++REKAK Q RI +L+L W+ VD +K
Sbjct: 120 HKSISVNGQTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKKS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ + DIN+ L
Sbjct: 180 GVFKNVPARSDLSADINESL 199
>gi|402756099|ref|ZP_10858355.1| 30S ribosomal protein S4 [Acinetobacter sp. NCTC 7422]
Length = 208
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG GS+ S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGGARGSKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +W+ VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|29653614|ref|NP_819306.1| 30S ribosomal protein S4 [Coxiella burnetii RSA 493]
gi|154706831|ref|YP_001425158.1| 30S ribosomal protein S4 [Coxiella burnetii Dugway 5J108-111]
gi|161831288|ref|YP_001596209.1| 30S ribosomal protein S4 [Coxiella burnetii RSA 331]
gi|212213226|ref|YP_002304162.1| 30S ribosomal protein S4 [Coxiella burnetii CbuG_Q212]
gi|41017834|sp|Q83EQ3.1|RS4_COXBU RecName: Full=30S ribosomal protein S4
gi|189045376|sp|A9KD07.1|RS4_COXBN RecName: Full=30S ribosomal protein S4
gi|189045377|sp|A9NAZ4.1|RS4_COXBR RecName: Full=30S ribosomal protein S4
gi|226697830|sp|B6J239.1|RS4_COXB2 RecName: Full=30S ribosomal protein S4
gi|29540876|gb|AAO89820.1| SSU ribosomal protein S4P [Coxiella burnetii RSA 493]
gi|154356117|gb|ABS77579.1| SSU ribosomal protein S4P [Coxiella burnetii Dugway 5J108-111]
gi|161763155|gb|ABX78797.1| ribosomal protein S4 [Coxiella burnetii RSA 331]
gi|212011636|gb|ACJ19017.1| SSU ribosomal protein S4P [Coxiella burnetii CbuG_Q212]
Length = 206
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/192 (59%), Positives = 143/192 (74%), Gaps = 1/192 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK +L RRE DL LKS R++DSKC ++ PG H + G RT+DYG Q R KQ
Sbjct: 1 MARYLGPKCRLSRREKTDLQLKSGIRAIDSKCNIERIPGMHWQRRG-RTTDYGVQLRMKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+KR Y +LEKQF Y+ + RLKG TG+ +LKLLESR DNVVYRMGF++TR+EARQLIS
Sbjct: 60 MIKRYYDVLEKQFANYYKQADRLKGSTGDNLLKLLESRLDNVVYRMGFAATRAEARQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI SY++KPGDII VR +AK Q RI +LEL++ P SWI VD KKM
Sbjct: 120 HKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLRIKGALELAQQRAPISWIEVDTKKMT 179
Query: 181 GVFKSEPNRSEF 192
G FK +P+ +E
Sbjct: 180 GTFKEQPDVAEL 191
>gi|377555734|ref|ZP_09785462.1| 30S ribosomal protein S4 [endosymbiont of Bathymodiolus sp.]
Length = 208
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRIS-GSRTSDYGYQFREK 59
MARY GP KL RREG DLFLKS RSLDSKCK+ PG HG + + ++YG Q REK
Sbjct: 1 MARYTGPTCKLARREGTDLFLKSGIRSLDSKCKVSQLPGMHGATARQQKGTEYGLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YGILEKQFR Y+ + ++ KG TGE +L LLE R DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRIYGILEKQFRSYYKKASQKKGSTGENLLSLLECRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH+A LVN VNI SY++ D IS+REKAKKQ+RI ++EL+E W+ VD+K +
Sbjct: 121 SHKAILVNGSAVNIPSYQVGANDEISIREKAKKQSRIQLAMELAEQGDLPEWVEVDSKAL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+GVFK+ P R + ++DI + L
Sbjct: 181 KGVFKNVPARDDLSSDIAEHL 201
>gi|406940779|gb|EKD73444.1| hypothetical protein ACD_45C00314G0002 [uncultured bacterium]
Length = 206
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+G + KL RREG DL L S RSLD+KCKLD PG HG G R ++YG Q REKQ
Sbjct: 1 MARYLGSRCKLSRREGADLSLMSGVRSLDTKCKLDAAPGMHGARRG-RATEYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGI+E+QF YF + ARLKG TGE +LKLLESR DNVVYRMGF STR+EARQL++
Sbjct: 60 KVRRIYGIMERQFSNYFKKAARLKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVT 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A LVN K VNI S+ + PGD+I+VR++AK+Q RI +L L++ + SW+ VD +
Sbjct: 120 HCAILVNGKSVNIPSHTVLPGDVITVRDRAKQQLRIQGALALAQSRSICSWVEVDLNALA 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ DI + L
Sbjct: 180 GTFKSVPERSDLPPDIYEKL 199
>gi|226953895|ref|ZP_03824359.1| 30S ribosomal protein S4 [Acinetobacter sp. ATCC 27244]
gi|294651610|ref|ZP_06728914.1| 30S ribosomal protein S4 [Acinetobacter haemolyticus ATCC 19194]
gi|226835378|gb|EEH67761.1| 30S ribosomal protein S4 [Acinetobacter sp. ATCC 27244]
gi|292822459|gb|EFF81358.1| 30S ribosomal protein S4 [Acinetobacter haemolyticus ATCC 19194]
Length = 208
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHNKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STRSEARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRSEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +W+ VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|285017343|ref|YP_003375054.1| 30S ribosomal protein S4 [Xanthomonas albilineans GPE PC73]
gi|283472561|emb|CBA15066.1| probable 30s ribosomal protein s4 [Xanthomonas albilineans GPE
PC73]
Length = 209
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/202 (56%), Positives = 149/202 (73%), Gaps = 2/202 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRIS-GSRTSDYGYQFREK 59
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + + SDY Q REK
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGATARKGKLSDYATQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+Y +LE+QFR Y+ + + KG TGE +L+LLE+R DNVVYRMGF+ TR ARQL+
Sbjct: 61 QKVKRIYCLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE-HSTPFSWITVDAKK 178
SHR LVN K VN+ASY++K GD I++ EKA+KQ R+ +L +++ H SW+ VD+KK
Sbjct: 121 SHRGVLVNGKSVNLASYQVKAGDAIALSEKAQKQLRVQEALSVADTHDLTPSWVEVDSKK 180
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
G+FK+ P+R++ DIN+ L
Sbjct: 181 FSGIFKAVPDRADLPADINEAL 202
>gi|161349358|ref|ZP_02096742.1| ribosomal protein S4 [Coxiella burnetii 'MSU Goat Q177']
gi|164601574|gb|EDQ95165.1| ribosomal protein S4 [Coxiella burnetii 'MSU Goat Q177']
Length = 206
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/192 (59%), Positives = 143/192 (74%), Gaps = 1/192 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK +L RRE DL LKS R++DSKC ++ PG H + G RT+DYG Q R KQ
Sbjct: 1 MARYLGPKCRLSRREKTDLQLKSGIRAIDSKCNIERIPGMHWQRRG-RTTDYGVQLRMKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+KR Y +LEKQF Y+ + RLKG TG+ +LKLLESR DNVVYRMGFS+TR+EARQLIS
Sbjct: 60 MIKRYYDVLEKQFANYYKQADRLKGSTGDNLLKLLESRLDNVVYRMGFSATRAEARQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI SY++KPGDII VR +AK Q +I +LEL++ P SWI VD KKM
Sbjct: 120 HKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLQIKGALELAQQRAPISWIEVDTKKMT 179
Query: 181 GVFKSEPNRSEF 192
G FK +P+ +E
Sbjct: 180 GTFKEQPDVAEL 191
>gi|262373497|ref|ZP_06066775.1| ribosomal protein S4 [Acinetobacter junii SH205]
gi|262311250|gb|EEY92336.1| ribosomal protein S4 [Acinetobacter junii SH205]
Length = 208
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +W+ VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|148244353|ref|YP_001219047.1| 30S ribosomal protein S4 [Candidatus Vesicomyosocius okutanii HA]
gi|172047241|sp|A5CXI8.1|RS4_VESOH RecName: Full=30S ribosomal protein S4
gi|146326180|dbj|BAF61323.1| 30S ribosomal protein S4 [Candidatus Vesicomyosocius okutanii HA]
Length = 208
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/201 (58%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MARY GP KL RREG DLFLKS RSLDSKCK+ PG HG + + ++YG Q REK
Sbjct: 1 MARYTGPTCKLARREGADLFLKSGIRSLDSKCKVTQLPGMHGASARRQKGTEYGLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK++R+YGILEKQFR Y+ + ++ KG TGE +L LLE R DNVVYRMGF+STR+EARQL+
Sbjct: 61 QKIRRIYGILEKQFRLYYKKASQKKGSTGENLLSLLECRLDNVVYRMGFASTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH++ +VN +VNI SY++ D IS+REKAKKQ+RI +LELS ST W+ VD K +
Sbjct: 121 SHKSIMVNGLVVNIPSYQVSVNDKISIREKAKKQSRIQLALELSGQSTQPQWLDVDNKTL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+GVFK+ P+R E +DI + L
Sbjct: 181 KGVFKNVPSRDELPSDIQEHL 201
>gi|424864552|ref|ZP_18288455.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86B]
gi|400759298|gb|EJP73480.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86B]
Length = 206
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP +L RREG DL+LKS R+++SKC +D PG HG G R SDYG Q REKQ
Sbjct: 1 MARYRGPSLRLSRREGTDLYLKSGIRAIESKCNMDTAPGVHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + A +KG TGE +L LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKKAAAMKGNTGENLLSLLEKRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K+VNIASY+++PGD + +RE+ K Q RI SL+++ W+ VD K ++
Sbjct: 120 HKALKVNGKVVNIASYQVQPGDEVEIRERKKGQLRIQASLKIAATREACEWLEVDDKNLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK+ P+R++ +IN+ L
Sbjct: 180 GVFKAVPDRADLGTEINENL 199
>gi|374263381|ref|ZP_09621929.1| 30S ribosomal protein S4 [Legionella drancourtii LLAP12]
gi|363535971|gb|EHL29417.1| 30S ribosomal protein S4 [Legionella drancourtii LLAP12]
Length = 206
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 142/197 (72%), Gaps = 1/197 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL LKS R SKCK + PGQHG R + YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHGD-KKPRLNGYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LEKQFR Y+ AR+KG TGE ++ LLE R DNVVYRMGF+STR+EARQL++
Sbjct: 60 KIRRLYGVLEKQFRGYYKMAARMKGSTGENLMTLLEKRLDNVVYRMGFASTRAEARQLVT 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + PGD+++VR+KAK Q RI +L LSE P WITVD+ +
Sbjct: 120 HKAILVNDKVVNVPSFLVSPGDVVTVRQKAKSQGRIQAALALSEQRAPCDWITVDSSSFK 179
Query: 181 GVFKSEPNRSEFANDIN 197
G F + P ++ ++D N
Sbjct: 180 GTFSTAPTLTDLSSDYN 196
>gi|262377288|ref|ZP_06070512.1| ribosomal protein S4 [Acinetobacter lwoffii SH145]
gi|262307741|gb|EEY88880.1| ribosomal protein S4 [Acinetobacter lwoffii SH145]
gi|407009711|gb|EKE24796.1| hypothetical protein ACD_6C00034G0005 [uncultured bacterium]
Length = 208
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKVPGQHGGARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ SW+ +D K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELATQRGMPSWMEIDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|190572967|ref|YP_001970812.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia K279a]
gi|194364557|ref|YP_002027167.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia R551-3]
gi|254521741|ref|ZP_05133796.1| ribosomal protein S4 [Stenotrophomonas sp. SKA14]
gi|344206204|ref|YP_004791345.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia JV3]
gi|386717241|ref|YP_006183567.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia D457]
gi|408823538|ref|ZP_11208428.1| 30S ribosomal protein S4 [Pseudomonas geniculata N1]
gi|424667227|ref|ZP_18104252.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia Ab55555]
gi|226695080|sp|B4SLH4.1|RS4_STRM5 RecName: Full=30S ribosomal protein S4
gi|226695081|sp|B2FQK7.1|RS4_STRMK RecName: Full=30S ribosomal protein S4
gi|190010889|emb|CAQ44498.1| putative 30S ribosomal subunit protein S4 [Stenotrophomonas
maltophilia K279a]
gi|194347361|gb|ACF50484.1| ribosomal protein S4 [Stenotrophomonas maltophilia R551-3]
gi|219719332|gb|EED37857.1| ribosomal protein S4 [Stenotrophomonas sp. SKA14]
gi|343777566|gb|AEM50119.1| ribosomal protein S4 [Stenotrophomonas maltophilia JV3]
gi|384076803|emb|CCH11388.1| SSU ribosomal protein S4p (S9e) [Stenotrophomonas maltophilia D457]
gi|401069362|gb|EJP77884.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia Ab55555]
gi|456738117|gb|EMF62794.1| SSU ribosomal protein S4p (S9e) [Stenotrophomonas maltophilia EPM1]
Length = 209
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/202 (56%), Positives = 147/202 (72%), Gaps = 2/202 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRIS-GSRTSDYGYQFREK 59
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + + SDY Q REK
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGATARKGKLSDYATQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QFR Y+ + + KG TGE +L+LLE+R DNVVYRMGF+ TR ARQL+
Sbjct: 61 QKVKRIYGLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLEL-SEHSTPFSWITVDAKK 178
SHR VN K VN+ASY++K GD I++ EKA KQ R+ +L + ++H SW+ VD+ K
Sbjct: 121 SHRGVTVNGKSVNLASYQVKAGDAIALSEKAAKQLRVQEALTVAAQHDLSPSWVEVDSGK 180
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
G+FK+ P+RS+ DIN+ L
Sbjct: 181 FTGIFKAVPDRSDLPADINEAL 202
>gi|288942048|ref|YP_003444288.1| 30S ribosomal protein S4 [Allochromatium vinosum DSM 180]
gi|288897420|gb|ADC63256.1| ribosomal protein S4 [Allochromatium vinosum DSM 180]
Length = 206
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 148/200 (74%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG+DL LKS RSLD+KCKL+ +PGQ R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLARREGVDLSLKSRARSLDTKCKLEKQPGQTTD-RRRRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ + A+ KG TGE +L++LE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKKAAQSKGATGENLLQILERRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN +IVNIASY++ D + VRE AKKQ R+ N++ L+E W+ VD+K ++
Sbjct: 120 HKGILVNGRIVNIASYQVNADDHVEVREAAKKQVRVQNAMALAEQYGFPDWVEVDSKGLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+RS+ DIN+ L
Sbjct: 180 GVFKRIPDRSDLPADINESL 199
>gi|260549816|ref|ZP_05824032.1| ribosomal protein S4 [Acinetobacter sp. RUH2624]
gi|424057936|ref|ZP_17795453.1| 30S ribosomal protein S4 [Acinetobacter nosocomialis Ab22222]
gi|425741890|ref|ZP_18860021.1| ribosomal protein S4 [Acinetobacter baumannii WC-487]
gi|445432067|ref|ZP_21438972.1| ribosomal protein S4 [Acinetobacter baumannii OIFC021]
gi|260407066|gb|EEX00543.1| ribosomal protein S4 [Acinetobacter sp. RUH2624]
gi|407439966|gb|EKF46487.1| 30S ribosomal protein S4 [Acinetobacter nosocomialis Ab22222]
gi|425489750|gb|EKU56052.1| ribosomal protein S4 [Acinetobacter baumannii WC-487]
gi|444759127|gb|ELW83610.1| ribosomal protein S4 [Acinetobacter baumannii OIFC021]
Length = 208
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +WI VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIDVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|169632374|ref|YP_001706110.1| 30S ribosomal protein S4 [Acinetobacter baumannii SDF]
gi|169794618|ref|YP_001712411.1| 30S ribosomal protein S4 [Acinetobacter baumannii AYE]
gi|213158811|ref|YP_002320809.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB0057]
gi|215482207|ref|YP_002324389.1| ribosomal protein S4 [Acinetobacter baumannii AB307-0294]
gi|239503210|ref|ZP_04662520.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB900]
gi|260557051|ref|ZP_05829268.1| ribosomal protein S4 [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|293610848|ref|ZP_06693148.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|301345034|ref|ZP_07225775.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB056]
gi|301512035|ref|ZP_07237272.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB058]
gi|301595208|ref|ZP_07240216.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB059]
gi|332853163|ref|ZP_08434600.1| ribosomal protein S4 [Acinetobacter baumannii 6013150]
gi|332868591|ref|ZP_08438247.1| ribosomal protein S4 [Acinetobacter baumannii 6013113]
gi|332876059|ref|ZP_08443843.1| ribosomal protein S4 [Acinetobacter baumannii 6014059]
gi|375136135|ref|YP_004996785.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus PHEA-2]
gi|384133264|ref|YP_005515876.1| 30S ribosomal protein S4 [Acinetobacter baumannii 1656-2]
gi|384144683|ref|YP_005527393.1| 30S ribosomal protein S4 [Acinetobacter baumannii MDR-ZJ06]
gi|385239004|ref|YP_005800343.1| 30S ribosomal protein S4 [Acinetobacter baumannii TCDC-AB0715]
gi|387122508|ref|YP_006288390.1| 30S ribosomal protein S4 [Acinetobacter baumannii MDR-TJ]
gi|395342372|ref|YP_001086056.2| 30S ribosomal protein S4 [Acinetobacter baumannii ATCC 17978]
gi|403674566|ref|ZP_10936813.1| 30S ribosomal protein S4 [Acinetobacter sp. NCTC 10304]
gi|407934159|ref|YP_006849802.1| 30S ribosomal protein S4 [Acinetobacter baumannii TYTH-1]
gi|416146874|ref|ZP_11601421.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB210]
gi|417545430|ref|ZP_12196516.1| ribosomal protein S4 [Acinetobacter baumannii OIFC032]
gi|417550909|ref|ZP_12201988.1| ribosomal protein S4 [Acinetobacter baumannii Naval-18]
gi|417554737|ref|ZP_12205806.1| ribosomal protein S4 [Acinetobacter baumannii Naval-81]
gi|417561821|ref|ZP_12212700.1| ribosomal protein S4 [Acinetobacter baumannii OIFC137]
gi|417563822|ref|ZP_12214696.1| ribosomal protein S4 [Acinetobacter baumannii OIFC143]
gi|417570396|ref|ZP_12221253.1| ribosomal protein S4 [Acinetobacter baumannii OIFC189]
gi|417574585|ref|ZP_12225439.1| ribosomal protein S4 [Acinetobacter baumannii Canada BC-5]
gi|417576147|ref|ZP_12226992.1| ribosomal protein S4 [Acinetobacter baumannii Naval-17]
gi|417871982|ref|ZP_12516894.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH1]
gi|417875088|ref|ZP_12519909.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH2]
gi|417880080|ref|ZP_12524617.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH3]
gi|417883010|ref|ZP_12527279.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH4]
gi|421199929|ref|ZP_15657090.1| ribosomal protein S4 [Acinetobacter baumannii OIFC109]
gi|421204431|ref|ZP_15661557.1| 30S ribosomal protein S4 [Acinetobacter baumannii AC12]
gi|421455510|ref|ZP_15904854.1| ribosomal protein S4 [Acinetobacter baumannii IS-123]
gi|421535341|ref|ZP_15981602.1| 30S ribosomal protein S4 [Acinetobacter baumannii AC30]
gi|421621611|ref|ZP_16062527.1| ribosomal protein S4 [Acinetobacter baumannii OIFC074]
gi|421624587|ref|ZP_16065455.1| ribosomal protein S4 [Acinetobacter baumannii OIFC098]
gi|421629068|ref|ZP_16069818.1| ribosomal protein S4 [Acinetobacter baumannii OIFC180]
gi|421633271|ref|ZP_16073908.1| ribosomal protein S4 [Acinetobacter baumannii Naval-13]
gi|421641750|ref|ZP_16082281.1| ribosomal protein S4 [Acinetobacter baumannii IS-235]
gi|421647977|ref|ZP_16088388.1| ribosomal protein S4 [Acinetobacter baumannii IS-251]
gi|421649828|ref|ZP_16090210.1| ribosomal protein S4 [Acinetobacter baumannii OIFC0162]
gi|421654505|ref|ZP_16094832.1| ribosomal protein S4 [Acinetobacter baumannii Naval-72]
gi|421659820|ref|ZP_16100036.1| ribosomal protein S4 [Acinetobacter baumannii Naval-83]
gi|421661194|ref|ZP_16101371.1| ribosomal protein S4 [Acinetobacter baumannii OIFC110]
gi|421665818|ref|ZP_16105924.1| ribosomal protein S4 [Acinetobacter baumannii OIFC087]
gi|421669117|ref|ZP_16109145.1| ribosomal protein S4 [Acinetobacter baumannii OIFC099]
gi|421673835|ref|ZP_16113772.1| ribosomal protein S4 [Acinetobacter baumannii OIFC065]
gi|421680388|ref|ZP_16120243.1| ribosomal protein S4 [Acinetobacter baumannii OIFC111]
gi|421685770|ref|ZP_16125536.1| ribosomal protein S4 [Acinetobacter baumannii IS-143]
gi|421690359|ref|ZP_16130030.1| ribosomal protein S4 [Acinetobacter baumannii IS-116]
gi|421695720|ref|ZP_16135325.1| ribosomal protein S4 [Acinetobacter baumannii WC-692]
gi|421698242|ref|ZP_16137784.1| ribosomal protein S4 [Acinetobacter baumannii IS-58]
gi|421704834|ref|ZP_16144275.1| 30S ribosomal protein S4 [Acinetobacter baumannii ZWS1122]
gi|421708613|ref|ZP_16147986.1| 30S ribosomal protein S4 [Acinetobacter baumannii ZWS1219]
gi|421789063|ref|ZP_16225331.1| ribosomal protein S4 [Acinetobacter baumannii Naval-82]
gi|421791079|ref|ZP_16227267.1| ribosomal protein S4 [Acinetobacter baumannii Naval-2]
gi|421796528|ref|ZP_16232588.1| ribosomal protein S4 [Acinetobacter baumannii Naval-21]
gi|421800230|ref|ZP_16236209.1| ribosomal protein S4 [Acinetobacter baumannii Canada BC1]
gi|421803930|ref|ZP_16239842.1| ribosomal protein S4 [Acinetobacter baumannii WC-A-694]
gi|421809496|ref|ZP_16245331.1| ribosomal protein S4 [Acinetobacter baumannii OIFC035]
gi|424050883|ref|ZP_17788419.1| 30S ribosomal protein S4 [Acinetobacter baumannii Ab11111]
gi|424058580|ref|ZP_17796077.1| 30S ribosomal protein S4 [Acinetobacter baumannii Ab33333]
gi|424062050|ref|ZP_17799537.1| 30S ribosomal protein S4 [Acinetobacter baumannii Ab44444]
gi|425748513|ref|ZP_18866500.1| ribosomal protein S4 [Acinetobacter baumannii WC-348]
gi|425754171|ref|ZP_18872038.1| ribosomal protein S4 [Acinetobacter baumannii Naval-113]
gi|427424162|ref|ZP_18914299.1| ribosomal protein S4 [Acinetobacter baumannii WC-136]
gi|445398099|ref|ZP_21429470.1| ribosomal protein S4 [Acinetobacter baumannii Naval-57]
gi|445444244|ref|ZP_21442888.1| ribosomal protein S4 [Acinetobacter baumannii WC-A-92]
gi|445456166|ref|ZP_21445700.1| ribosomal protein S4 [Acinetobacter baumannii OIFC047]
gi|445463806|ref|ZP_21449341.1| ribosomal protein S4 [Acinetobacter baumannii OIFC338]
gi|445478704|ref|ZP_21454827.1| ribosomal protein S4 [Acinetobacter baumannii Naval-78]
gi|445489809|ref|ZP_21458817.1| ribosomal protein S4 [Acinetobacter baumannii AA-014]
gi|152060924|sp|A3M960.2|RS4_ACIBT RecName: Full=30S ribosomal protein S4
gi|226697785|sp|B7GW26.1|RS4_ACIB3 RecName: Full=30S ribosomal protein S4
gi|226697786|sp|B7IA15.1|RS4_ACIB5 RecName: Full=30S ribosomal protein S4
gi|226697788|sp|B0VQU2.1|RS4_ACIBS RecName: Full=30S ribosomal protein S4
gi|226697789|sp|B0V6U6.1|RS4_ACIBY RecName: Full=30S ribosomal protein S4
gi|169147545|emb|CAM85406.1| 30S ribosomal protein S4 [Acinetobacter baumannii AYE]
gi|169151166|emb|CAO99838.1| 30S ribosomal protein S4 [Acinetobacter baumannii]
gi|193078463|gb|ABO13454.2| 30S ribosomal protein S4 [Acinetobacter baumannii ATCC 17978]
gi|213057971|gb|ACJ42873.1| ribosomal protein S4 [Acinetobacter baumannii AB0057]
gi|213986640|gb|ACJ56939.1| ribosomal protein S4 [Acinetobacter baumannii AB307-0294]
gi|260409657|gb|EEX02958.1| ribosomal protein S4 [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|292827192|gb|EFF85557.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|322509484|gb|ADX04938.1| 30S ribosomal protein S4 [Acinetobacter baumannii 1656-2]
gi|323519505|gb|ADX93886.1| 30S ribosomal protein S4 [Acinetobacter baumannii TCDC-AB0715]
gi|325123580|gb|ADY83103.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus PHEA-2]
gi|332728832|gb|EGJ60191.1| ribosomal protein S4 [Acinetobacter baumannii 6013150]
gi|332733268|gb|EGJ64462.1| ribosomal protein S4 [Acinetobacter baumannii 6013113]
gi|332735677|gb|EGJ66720.1| ribosomal protein S4 [Acinetobacter baumannii 6014059]
gi|333365830|gb|EGK47844.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB210]
gi|342223982|gb|EGT89055.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH1]
gi|342225877|gb|EGT90854.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH3]
gi|342226617|gb|EGT91579.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH2]
gi|342236755|gb|EGU01265.1| 30S ribosomal protein S4 [Acinetobacter baumannii ABNIH4]
gi|347595176|gb|AEP07897.1| 30S ribosomal protein S4 [Acinetobacter baumannii MDR-ZJ06]
gi|385877000|gb|AFI94095.1| ribosomal protein S4, bacterial/organelle type [Acinetobacter
baumannii MDR-TJ]
gi|395524403|gb|EJG12492.1| ribosomal protein S4 [Acinetobacter baumannii OIFC137]
gi|395550844|gb|EJG16853.1| ribosomal protein S4 [Acinetobacter baumannii OIFC189]
gi|395555578|gb|EJG21579.1| ribosomal protein S4 [Acinetobacter baumannii OIFC143]
gi|395564926|gb|EJG26577.1| ribosomal protein S4 [Acinetobacter baumannii OIFC109]
gi|395569368|gb|EJG30030.1| ribosomal protein S4 [Acinetobacter baumannii Naval-17]
gi|398326112|gb|EJN42264.1| 30S ribosomal protein S4 [Acinetobacter baumannii AC12]
gi|400210153|gb|EJO41123.1| ribosomal protein S4 [Acinetobacter baumannii Canada BC-5]
gi|400211748|gb|EJO42710.1| ribosomal protein S4 [Acinetobacter baumannii IS-123]
gi|400383318|gb|EJP41996.1| ribosomal protein S4 [Acinetobacter baumannii OIFC032]
gi|400386734|gb|EJP49808.1| ribosomal protein S4 [Acinetobacter baumannii Naval-18]
gi|400391154|gb|EJP58201.1| ribosomal protein S4 [Acinetobacter baumannii Naval-81]
gi|404564631|gb|EKA69810.1| ribosomal protein S4 [Acinetobacter baumannii IS-116]
gi|404565238|gb|EKA70408.1| ribosomal protein S4 [Acinetobacter baumannii WC-692]
gi|404570797|gb|EKA75869.1| ribosomal protein S4 [Acinetobacter baumannii IS-143]
gi|404572542|gb|EKA77584.1| ribosomal protein S4 [Acinetobacter baumannii IS-58]
gi|404665822|gb|EKB33784.1| 30S ribosomal protein S4 [Acinetobacter baumannii Ab33333]
gi|404669636|gb|EKB37529.1| 30S ribosomal protein S4 [Acinetobacter baumannii Ab11111]
gi|404674462|gb|EKB42210.1| 30S ribosomal protein S4 [Acinetobacter baumannii Ab44444]
gi|407188927|gb|EKE60155.1| 30S ribosomal protein S4 [Acinetobacter baumannii ZWS1122]
gi|407189341|gb|EKE60567.1| 30S ribosomal protein S4 [Acinetobacter baumannii ZWS1219]
gi|407902740|gb|AFU39571.1| 30S ribosomal protein S4 [Acinetobacter baumannii TYTH-1]
gi|408510276|gb|EKK11938.1| ribosomal protein S4 [Acinetobacter baumannii Naval-72]
gi|408512227|gb|EKK13872.1| ribosomal protein S4 [Acinetobacter baumannii OIFC0162]
gi|408514502|gb|EKK16108.1| ribosomal protein S4 [Acinetobacter baumannii IS-235]
gi|408516171|gb|EKK17750.1| ribosomal protein S4 [Acinetobacter baumannii IS-251]
gi|408697520|gb|EKL43032.1| ribosomal protein S4 [Acinetobacter baumannii OIFC074]
gi|408701244|gb|EKL46683.1| ribosomal protein S4 [Acinetobacter baumannii OIFC098]
gi|408703927|gb|EKL49307.1| ribosomal protein S4 [Acinetobacter baumannii OIFC180]
gi|408706731|gb|EKL52031.1| ribosomal protein S4 [Acinetobacter baumannii Naval-13]
gi|408707153|gb|EKL52447.1| ribosomal protein S4 [Acinetobacter baumannii Naval-83]
gi|408716043|gb|EKL61164.1| ribosomal protein S4 [Acinetobacter baumannii OIFC110]
gi|409986704|gb|EKO42896.1| 30S ribosomal protein S4 [Acinetobacter baumannii AC30]
gi|410386053|gb|EKP38537.1| ribosomal protein S4 [Acinetobacter baumannii OIFC065]
gi|410389244|gb|EKP41659.1| ribosomal protein S4 [Acinetobacter baumannii OIFC099]
gi|410389552|gb|EKP41964.1| ribosomal protein S4 [Acinetobacter baumannii OIFC087]
gi|410389757|gb|EKP42168.1| ribosomal protein S4 [Acinetobacter baumannii OIFC111]
gi|410398777|gb|EKP50983.1| ribosomal protein S4 [Acinetobacter baumannii Naval-21]
gi|410399949|gb|EKP52130.1| ribosomal protein S4 [Acinetobacter baumannii Naval-82]
gi|410403957|gb|EKP56031.1| ribosomal protein S4 [Acinetobacter baumannii Naval-2]
gi|410408438|gb|EKP60406.1| ribosomal protein S4 [Acinetobacter baumannii Canada BC1]
gi|410412396|gb|EKP64255.1| ribosomal protein S4 [Acinetobacter baumannii WC-A-694]
gi|410414393|gb|EKP66195.1| ribosomal protein S4 [Acinetobacter baumannii OIFC035]
gi|425491394|gb|EKU57679.1| ribosomal protein S4 [Acinetobacter baumannii WC-348]
gi|425497564|gb|EKU63670.1| ribosomal protein S4 [Acinetobacter baumannii Naval-113]
gi|425699270|gb|EKU68889.1| ribosomal protein S4 [Acinetobacter baumannii WC-136]
gi|444761889|gb|ELW86266.1| ribosomal protein S4 [Acinetobacter baumannii WC-A-92]
gi|444766251|gb|ELW90526.1| ribosomal protein S4 [Acinetobacter baumannii AA-014]
gi|444774777|gb|ELW98853.1| ribosomal protein S4 [Acinetobacter baumannii Naval-78]
gi|444778697|gb|ELX02707.1| ribosomal protein S4 [Acinetobacter baumannii OIFC047]
gi|444780155|gb|ELX04121.1| ribosomal protein S4 [Acinetobacter baumannii OIFC338]
gi|444783858|gb|ELX07695.1| ribosomal protein S4 [Acinetobacter baumannii Naval-57]
gi|452946322|gb|EME51821.1| 30S ribosomal protein S4 [Acinetobacter baumannii MSP4-16]
Length = 208
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +WI VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|262370554|ref|ZP_06063879.1| ribosomal protein S4 [Acinetobacter johnsonii SH046]
gi|381197885|ref|ZP_09905224.1| 30S ribosomal protein S4 [Acinetobacter lwoffii WJ10621]
gi|262314354|gb|EEY95396.1| ribosomal protein S4 [Acinetobacter johnsonii SH046]
Length = 208
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKAAKAPGQHGGARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ SW+ +D K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAVELAAQRGIPSWMEIDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|424862737|ref|ZP_18286650.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86A]
gi|400757358|gb|EJP71569.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86A]
Length = 206
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP +L RREG DL+LKS R+++SKC +D +PG HG G R SDYG Q REKQ
Sbjct: 1 MARYRGPSLRLSRREGTDLYLKSGVRAIESKCNMDTQPGVHGARRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ + A KG TGE +L LLE R DNVVYRMGF STR+EARQ++S
Sbjct: 60 KVRRMYGVLEKQFRNYYKKAASSKGNTGENLLSLLEKRLDNVVYRMGFGSTRAEARQMVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF+VN K+VNI SY+++ GD I VRE K RIA +L+++ W+ VD + ++
Sbjct: 120 HKAFMVNGKVVNIPSYQVQAGDEIEVRESKKGHLRIAAALKIASTREDCDWLEVDEQNLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P+R++ + +IN+ L
Sbjct: 180 GVFKSVPDRTDLSTEINENL 199
>gi|406035422|ref|ZP_11042786.1| 30S ribosomal protein S4 [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 208
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGAARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +W+ VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGLPAWMEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|184159574|ref|YP_001847913.1| 30S ribosomal protein S4 [Acinetobacter baumannii ACICU]
gi|226697787|sp|B2HZ84.1|RS4_ACIBC RecName: Full=30S ribosomal protein S4
gi|183211168|gb|ACC58566.1| 30S ribosomal protein S4 [Acinetobacter baumannii ACICU]
Length = 208
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +WI VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKSGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|403050172|ref|ZP_10904656.1| 30S ribosomal protein S4 [Acinetobacter bereziniae LMG 1003]
gi|445421880|ref|ZP_21436185.1| ribosomal protein S4 [Acinetobacter sp. WC-743]
gi|444757150|gb|ELW81681.1| ribosomal protein S4 [Acinetobacter sp. WC-743]
Length = 207
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 148/201 (73%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ S ++ S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKSAKAPGQHGQ-SRAKQSEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +WI VD K+
Sbjct: 120 SHRSITLNGRRVNIASIQVKAGDVIAVHESAKQQLRIKNAIELAAQRGTAAWIDVDHSKL 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 180 EGTFKAAPDRSDLPAEINESL 200
>gi|357418207|ref|YP_004931227.1| 30S ribosomal protein S4 [Pseudoxanthomonas spadix BD-a59]
gi|355335785|gb|AER57186.1| 30S ribosomal protein S4 [Pseudoxanthomonas spadix BD-a59]
Length = 209
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/202 (57%), Positives = 146/202 (72%), Gaps = 2/202 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRIS-GSRTSDYGYQFREK 59
MARYIGP KL RREG DL LKS R+LDSKCKL+ +PGQHG + + SDY Q REK
Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQKPGQHGATARKGKLSDYATQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QFR Y+ + + KG TGE +L+LLE+R DNV+YRMGF+ TR ARQL+
Sbjct: 61 QKVKRIYGLLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEH-STPFSWITVDAKK 178
SHR LVN K VN+ SY++K GD I + EKA+KQ R+ SL ++E SW+ VD+KK
Sbjct: 121 SHRGVLVNGKSVNLPSYQVKAGDAIELSEKAQKQLRVQESLTVAEQLDLSPSWVEVDSKK 180
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
GVFK+ P RS+ DIN+ L
Sbjct: 181 FAGVFKAVPVRSDLPADINEAL 202
>gi|118602237|ref|YP_903452.1| 30S ribosomal protein S4 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|152112257|sp|A1AVM4.1|RS4_RUTMC RecName: Full=30S ribosomal protein S4
gi|118567176|gb|ABL01981.1| SSU ribosomal protein S4P [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 208
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHG-RISGSRTSDYGYQFREK 59
MARY GP KL RREG DLFLKS RSLDSKC + PG HG + ++YG Q REK
Sbjct: 1 MARYTGPTCKLARREGTDLFLKSGIRSLDSKCNVTQLPGMHGANARRQKGTEYGLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YGILEKQFR Y+ + ++ KG TGE +L LLE R DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRIYGILEKQFRLYYKKASQKKGSTGENLLSLLECRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH++ L+N +VNI SY++ D IS+REKAKKQ+RI +LEL+E ST W+ +D K +
Sbjct: 121 SHKSILMNGLVVNIPSYQVSVNDEISIREKAKKQSRIQLALELAEQSTQPQWLDIDHKAL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+GVFK+ P R E ++DI + L
Sbjct: 181 KGVFKNVPARDELSSDIQEHL 201
>gi|375337677|ref|ZP_09779021.1| 30S ribosomal protein S4 [Succinivibrionaceae bacterium WG-1]
Length = 207
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARY GP KL RREG DLFLKS ++ KCK + PGQHG + R S+YG Q REK
Sbjct: 1 MARYTGPSLKLSRREGCDLFLKSGVKTFADKCKKSAKLPGQHG-ANKPRLSEYGVQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YG+LE+QF Y+ +R G TGE +L+LLESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVRRIYGVLERQFSNYYKTASRAGGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH+A VN K+VNI SY++ P D+I+VREKAK Q RI +L+LS++ +WI VD+ KM
Sbjct: 120 SHKAITVNGKVVNIPSYQVSPADVIAVREKAKNQERIKVALDLSKNREQPTWIEVDSDKM 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
GV+K++P RSE + DI + L
Sbjct: 180 SGVYKNKPERSELSADIKEQL 200
>gi|388457567|ref|ZP_10139862.1| 30S ribosomal protein S4 [Fluoribacter dumoffii Tex-KL]
Length = 206
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 141/197 (71%), Gaps = 1/197 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL LKS R SKCK + PGQHG R + YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHGD-KKPRLNSYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGILEKQFR Y+ AR+KG TGE ++ LLE R DNVVYRMGF+STR+EARQL++
Sbjct: 60 KIRRLYGILEKQFRGYYKMAARMKGATGENLMSLLERRLDNVVYRMGFASTRAEARQLVT 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ +KPGD+ISVR+KA+ Q RI +L LSE WITVD +
Sbjct: 120 HKAILVNDKVVNVPSFLVKPGDVISVRQKARAQGRIQAALALSEQRAACDWITVDTSSFK 179
Query: 181 GVFKSEPNRSEFANDIN 197
G F + P ++ ++D N
Sbjct: 180 GTFSTAPTLTDLSSDYN 196
>gi|406941575|gb|EKD74031.1| 30S ribosomal protein S4 [uncultured bacterium]
Length = 206
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 144/200 (72%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP+ KL RRE +DL L S R+LDSKCKLD PGQHG G R +++G Q REKQ
Sbjct: 1 MARYLGPRCKLSRREKMDLSLTSGVRALDSKCKLDTAPGQHGARRG-RETEHGKQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QF YF + RLKG TGE +LKLLE R DNVVYRMGF +TR+E+RQL++
Sbjct: 60 KIRRIYGVLERQFSNYFAKAMRLKGSTGENLLKLLERRLDNVVYRMGFGATRAESRQLVT 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A LVN K VNI SY + PGDI+SVRE A+KQ RI +L L++ +W+ +DA
Sbjct: 120 HCAILVNGKTVNIPSYLVMPGDIVSVRESARKQQRIQAALTLAQTRPACAWVEIDAGTCT 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R+ D+N+ L
Sbjct: 180 GTFKEIPDRAALPPDLNEQL 199
>gi|425745911|ref|ZP_18863945.1| ribosomal protein S4 [Acinetobacter baumannii WC-323]
gi|425487057|gb|EKU53416.1| ribosomal protein S4 [Acinetobacter baumannii WC-323]
Length = 208
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG GS+ S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGGARGSKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI +++EL+ +W+ VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKSAIELAAQRGIPAWMEVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 181 EGTFKAAPDRSDLPAEINESL 201
>gi|299768690|ref|YP_003730716.1| 30S ribosomal protein S4 [Acinetobacter oleivorans DR1]
gi|298698778|gb|ADI89343.1| 30S ribosomal protein S4 [Acinetobacter oleivorans DR1]
Length = 208
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +WI VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIDVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+R++ +IN+ L
Sbjct: 181 EGTFKAAPDRADLPAEINESL 201
>gi|269469225|gb|EEZ80756.1| ribosomal protein S4 [uncultured SUP05 cluster bacterium]
Length = 208
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHG-RISGSRTSDYGYQFREK 59
MARY GP KL RREG DLFLKS RSLDSKCK+ PG HG + ++YG Q REK
Sbjct: 1 MARYTGPTCKLARREGTDLFLKSGIRSLDSKCKITQLPGMHGANARRQKGTEYGLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YGILEKQFR Y+ + ++ KG TG+ +L LLE R DNVVYRMGF +TR+EARQL+
Sbjct: 61 QKVRRIYGILEKQFRLYYKKASQKKGSTGDNLLSLLECRLDNVVYRMGFGATRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SH++ LVN IVNI SY++ D ISVREK+KKQ+RI ++EL+E S W+ VD K +
Sbjct: 121 SHKSILVNGSIVNIPSYQVSANDEISVREKSKKQSRIQLAVELAEQSGQVEWVDVDNKAL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+GVFK+ P R + ++DI + L
Sbjct: 181 KGVFKNVPARDDLSSDIEEHL 201
>gi|54296389|ref|YP_122758.1| 30S ribosomal protein S4 [Legionella pneumophila str. Paris]
gi|61215409|sp|Q5X835.1|RS4_LEGPA RecName: Full=30S ribosomal protein S4
gi|53750174|emb|CAH11566.1| 30S ribosomal subunit protein S4 [Legionella pneumophila str.
Paris]
Length = 206
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 113/197 (57%), Positives = 139/197 (70%), Gaps = 1/197 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL LKS R SKCK + PGQHG R + YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHGD-KKPRLNSYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGILEKQFR Y+ + AR KG TGE ++ LLE R DNVVYRMGF+STR+EARQL++
Sbjct: 60 KIRRLYGILEKQFRNYYKKAARQKGSTGENLMALLERRLDNVVYRMGFASTRAEARQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + PGD ISVR+KAK Q RI +L LSE P WITVD +
Sbjct: 120 HKAILVNDKVVNVPSFLVNPGDTISVRQKAKNQGRIQAALALSEQRAPCDWITVDTGSFK 179
Query: 181 GVFKSEPNRSEFANDIN 197
G F + P + ++D N
Sbjct: 180 GTFSTAPTLMDLSSDYN 196
>gi|431932124|ref|YP_007245170.1| 30S ribosomal protein S4 [Thioflavicoccus mobilis 8321]
gi|431830427|gb|AGA91540.1| ribosomal protein S4, bacterial/organelle type [Thioflavicoccus
mobilis 8321]
Length = 206
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 145/200 (72%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGP KL RREG DL LKS R+LDSKC L+ PGQ G R SDYG Q REKQ
Sbjct: 1 MARYIGPTCKLARREGTDLGLKSRARALDSKCNLEKIPGQAGDRR-RRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG++EKQFR Y+ + A KG TGEI+L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVMEKQFRNYYKKAASSKGATGEILLQLLERRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ +VN ++VNI SY++ D + VREKA KQ R+ N+L L+E WI VD K ++
Sbjct: 120 HKGIMVNGRVVNIPSYQVSAEDHVEVREKAGKQVRVQNALALAEQYGFPEWIEVDTKGLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ A DIN+ L
Sbjct: 180 GVFKRIPDRADLAADINESL 199
>gi|238898903|ref|YP_002924585.1| 30S ribosomal protein S4 [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|259495283|sp|C4K794.1|RS4_HAMD5 RecName: Full=30S ribosomal protein S4
gi|229466663|gb|ACQ68437.1| 30S ribosomal subunit protein S4 [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 206
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 147/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS R++++KCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPNLKLSRREGTDLFLKSGVRAIETKCKIDQPPGQHG-TRKPRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QF Y+ E ARLKG TGE +L+LLE R DNVVYR+GF +TR+EARQL++
Sbjct: 60 KVRRVYGVLERQFHGYYKEAARLKGNTGENLLQLLERRLDNVVYRIGFGATRAEARQLVT 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI S+ + P D +SVR KA+KQ+RI SL+LS SW+ +D+ +M
Sbjct: 120 HKAILVNDRVVNIPSFLVSPNDRVSVRRKAQKQSRIKESLQLSAQREELSWLEIDSSEMI 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+ + I++ L
Sbjct: 180 GTFKFIPERAVISGGIDEHL 199
>gi|444921170|ref|ZP_21241008.1| 30S ribosomal protein S4 [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507906|gb|ELV08080.1| 30S ribosomal protein S4 [Wohlfahrtiimonas chitiniclastica SH04]
Length = 207
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 149/201 (74%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKL-DLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DLFLKS R +SK KL D PGQHG + S YG Q REK
Sbjct: 1 MARYIGPKCKLERREGTDLFLKSPARPFESKTKLHDKAPGQHG-ARPKKLSVYGTQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK++R+YG+LEKQFR Y+ E AR KG TGE +L++LE R DNVVYRMGF+ TR+EARQL+
Sbjct: 60 QKLRRIYGVLEKQFRSYYAEAARRKGSTGENLLQILECRLDNVVYRMGFAVTRAEARQLV 119
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHRA LVN K VNI SY++K D++++ EKAK+QTR+ +++L+E + W++V+ KM
Sbjct: 120 SHRAVLVNGKSVNIPSYQLKAEDVVTLSEKAKQQTRVKYAMQLAESNGFVEWLSVEPSKM 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG +K P+RS+ DIN+ L
Sbjct: 180 EGTYKRIPDRSDLPADINESL 200
>gi|397666033|ref|YP_006507570.1| 30S ribosomal protein S4 [Legionella pneumophila subsp.
pneumophila]
gi|395129444|emb|CCD07674.1| 30S ribosomal subunit protein S4 [Legionella pneumophila subsp.
pneumophila]
Length = 206
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 139/197 (70%), Gaps = 1/197 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL LKS R SKCK + PGQHG R + YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHGD-KKPRLNSYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGILEKQFR Y+ + AR KG TGE ++ LLE R DNVVYRMGF+STR+EARQL++
Sbjct: 60 KIRRLYGILEKQFRNYYKKAARQKGSTGENLMTLLERRLDNVVYRMGFASTRAEARQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + PGD +SVR+KAK Q RI +L LSE P WITVD +
Sbjct: 120 HKAILVNDKVVNVPSFLVNPGDTVSVRQKAKNQGRIQAALALSEQRAPCDWITVDTGSFK 179
Query: 181 GVFKSEPNRSEFANDIN 197
G F + P + ++D N
Sbjct: 180 GTFSTAPTLMDLSSDYN 196
>gi|52840598|ref|YP_094397.1| 30S ribosomal protein S4 [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|54293345|ref|YP_125760.1| 30S ribosomal protein S4 [Legionella pneumophila str. Lens]
gi|148361031|ref|YP_001252238.1| 30S ribosomal protein S4 [Legionella pneumophila str. Corby]
gi|296105901|ref|YP_003617601.1| 30S ribosomal protein S4 [Legionella pneumophila 2300/99 Alcoy]
gi|378776299|ref|YP_005184731.1| 30S ribosomal protein S4 [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|397662921|ref|YP_006504459.1| 30S ribosomal protein S4 [Legionella pneumophila subsp.
pneumophila]
gi|61215402|sp|Q5WZI8.1|RS4_LEGPL RecName: Full=30S ribosomal protein S4
gi|61215429|sp|Q5ZYL9.1|RS4_LEGPH RecName: Full=30S ribosomal protein S4
gi|172047874|sp|A5IHP2.1|RS4_LEGPC RecName: Full=30S ribosomal protein S4
gi|52627709|gb|AAU26450.1| 30S ribosomal protein S4 [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|53753177|emb|CAH14624.1| 30S ribosomal subunit protein S4 [Legionella pneumophila str. Lens]
gi|148282804|gb|ABQ56892.1| 30S ribosomal protein S4 [Legionella pneumophila str. Corby]
gi|295647802|gb|ADG23649.1| small subunit ribosomal protein S4 [Legionella pneumophila 2300/99
Alcoy]
gi|307609161|emb|CBW98617.1| 30S ribosomal subunit protein S4 [Legionella pneumophila 130b]
gi|364507108|gb|AEW50632.1| 30S ribosomal protein S4 [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|395126332|emb|CCD04513.1| 30S ribosomal subunit protein S4 [Legionella pneumophila subsp.
pneumophila]
Length = 206
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 139/197 (70%), Gaps = 1/197 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DL LKS R SKCK + PGQHG R + YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHGD-KKPRLNSYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGILEKQFR Y+ + AR KG TGE ++ LLE R DNVVYRMGF+STR+EARQL++
Sbjct: 60 KIRRLYGILEKQFRNYYKKAARQKGSTGENLMALLERRLDNVVYRMGFASTRAEARQLVA 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + PGD +SVR+KAK Q RI +L LSE P WITVD +
Sbjct: 120 HKAILVNDKVVNVPSFLVNPGDTVSVRQKAKNQGRIQAALALSEQRAPCDWITVDTGSFK 179
Query: 181 GVFKSEPNRSEFANDIN 197
G F + P + ++D N
Sbjct: 180 GTFSTAPTLMDLSSDYN 196
>gi|344337586|ref|ZP_08768520.1| ribosomal protein S4 [Thiocapsa marina 5811]
gi|343802539|gb|EGV20479.1| ribosomal protein S4 [Thiocapsa marina 5811]
Length = 206
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 145/200 (72%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RREG DL LKS RSLD+KC L+ +PGQ R SDYG Q REKQ
Sbjct: 1 MARYTGPTCKLARREGTDLALKSRARSLDTKCNLEKQPGQTTDRR-RRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG++E+QFR Y+ + A+ KG TGE +L+LLE R DNVVYRMGF +TRSEARQL+S
Sbjct: 60 KVRRIYGLMERQFRNYYKKAAQAKGATGENLLQLLERRLDNVVYRMGFGATRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNIASY++ D + VRE AKKQ R+ N+L L+E W+ VD K ++
Sbjct: 120 HKAILVNGRVVNIASYQVGADDHVEVREAAKKQVRVQNALALAEQYGFPDWVDVDTKGLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+RS+ DIN+ L
Sbjct: 180 GVFKRIPDRSDLPADINESL 199
>gi|262280201|ref|ZP_06057985.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus RUH2202]
gi|424741455|ref|ZP_18169808.1| ribosomal protein S4 [Acinetobacter baumannii WC-141]
gi|262257979|gb|EEY76713.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus RUH2202]
gi|422944844|gb|EKU39821.1| ribosomal protein S4 [Acinetobacter baumannii WC-141]
Length = 208
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 147/201 (73%), Gaps = 1/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+R+YG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 61 QKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +W+ VD K+
Sbjct: 121 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMDVDHSKL 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+R++ +IN+ L
Sbjct: 181 EGTFKAAPDRADLPAEINESL 201
>gi|389795118|ref|ZP_10198253.1| 30S ribosomal protein S4 [Rhodanobacter fulvus Jip2]
gi|388431251|gb|EIL88335.1| 30S ribosomal protein S4 [Rhodanobacter fulvus Jip2]
Length = 208
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 145/207 (70%), Gaps = 13/207 (6%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY G KL RREG DL LKS R+LDSKCKL+ +PGQHG R SDY Q REKQ
Sbjct: 1 MARYRGATCKLARREGADLSLKSPARALDSKCKLENKPGQHGANKRMRMSDYAVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QF Y+ + LKG TGE +L+LLESR DNVVYRMGF+ TR++ARQL++
Sbjct: 61 KVKRIYGVLERQFSNYYTKATTLKGNTGENLLRLLESRLDNVVYRMGFAVTRAQARQLVA 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFS-------WIT 173
H+A LVN K VNI SY+++PGD I++ EKA+ Q R+ E +T F W+
Sbjct: 121 HKAILVNGKKVNIPSYQVRPGDAIALTEKARSQLRV------QEAATVFDTMDLRPIWVE 174
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VDAKK EG FKS P+R + +DIN+ L
Sbjct: 175 VDAKKFEGTFKSVPDRGDLPSDINEAL 201
>gi|386706539|ref|YP_006170386.1| 30S ribosomal protein S4 [Escherichia coli P12b]
gi|383104707|gb|AFG42216.1| 30S ribosomal protein S4 [Escherichia coli P12b]
Length = 173
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 107/171 (62%), Positives = 136/171 (79%), Gaps = 1/171 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSW 171
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTW 170
>gi|344344828|ref|ZP_08775687.1| ribosomal protein S4 [Marichromatium purpuratum 984]
gi|343803522|gb|EGV21429.1| ribosomal protein S4 [Marichromatium purpuratum 984]
Length = 206
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 144/200 (72%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RREG DL LKS R+LD+KC L+ +PGQ R SDYG Q REKQ
Sbjct: 1 MARYTGPTCKLARREGTDLSLKSRARALDTKCNLEKQPGQTTD-RRRRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + A KG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKKAAGTKGATGENLLQLLERRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN +IVNIAS+++ D I VRE A+KQ R+ N+L L+E W+ VD K M+
Sbjct: 120 HKAILVNGRIVNIASFQVGVDDEIEVREAARKQVRVQNALSLAEQYGFSDWVEVDTKAMK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+RS+ DIN+ L
Sbjct: 180 GVFKRVPDRSDLPADINESL 199
>gi|71277977|ref|YP_267375.1| 30S ribosomal protein S4 [Colwellia psychrerythraea 34H]
gi|90101683|sp|Q488Y9.1|RS4_COLP3 RecName: Full=30S ribosomal protein S4
gi|71143717|gb|AAZ24190.1| ribosomal protein S4 [Colwellia psychrerythraea 34H]
Length = 206
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/200 (58%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIETIPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R++G+LEKQF Y+ E AR KG TGE +L+LLE+R DNVVYRMG++STR+EARQL+S
Sbjct: 60 KVRRIFGVLEKQFSNYYKEAARQKGNTGENLLQLLETRLDNVVYRMGYASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN +VNI S+ +K D +SVREK+K Q RI +LEL++ W+ VD KK+E
Sbjct: 120 HKAIVVNGVVVNIPSFTVKAEDTVSVREKSKTQARIIAALELADQREKPLWVEVDTKKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ + +IN+ L
Sbjct: 180 GVFKRVPDRADLSAEINEQL 199
>gi|50086191|ref|YP_047701.1| 30S ribosomal protein S4 [Acinetobacter sp. ADP1]
gi|61215531|sp|Q6F7T6.1|RS4_ACIAD RecName: Full=30S ribosomal protein S4
gi|49532167|emb|CAG69879.1| 30S ribosomal protein S4 [Acinetobacter sp. ADP1]
Length = 207
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGQARG-KQSEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +W+ VD K+
Sbjct: 120 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMDVDHSKL 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 180 EGTFKAAPDRSDLPAEINESL 200
>gi|153871948|ref|ZP_02000981.1| 30S ribosomal protein S4 [Beggiatoa sp. PS]
gi|152071584|gb|EDN69017.1| 30S ribosomal protein S4 [Beggiatoa sp. PS]
Length = 206
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/197 (56%), Positives = 144/197 (73%), Gaps = 1/197 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG+DLFLKS R L+SKCKL+ PGQHG R SDY Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGVDLFLKSRARGLESKCKLEKLPGQHGD-KRPRLSDYALQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QF Y+++ +R KG TGE +L LLE R DNVVYRMGF+ TR+EARQL+S
Sbjct: 60 KLRRLYGVLERQFHNYYLKASRKKGSTGENLLMLLEGRLDNVVYRMGFAVTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN+K VNI SY++K GD+I++R K++ Q RI +L + W+ VD +KM
Sbjct: 120 HKAILVNEKSVNIPSYQVKAGDVIAIRGKSRTQLRIKAALSQAVEFELPEWVEVDVEKMS 179
Query: 181 GVFKSEPNRSEFANDIN 197
GVFK++P E D+N
Sbjct: 180 GVFKAQPTIGELPGDMN 196
>gi|399155027|ref|ZP_10755094.1| 30S ribosomal protein S4 [gamma proteobacterium SCGC AAA007-O20]
Length = 208
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/202 (57%), Positives = 148/202 (73%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRT--SDYGYQFRE 58
MARY GP KL RREG DL LKS RS+DSKCKL PG HG ++ R S+YG Q RE
Sbjct: 1 MARYTGPTCKLARREGTDLELKSGIRSIDSKCKLSQLPGVHG-VNARRQKGSEYGLQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKV+RMYG+LEKQFR Y+ + + KG TGE +L LLE R DNVVYRMGF+STRSEARQL
Sbjct: 60 KQKVRRMYGVLEKQFRLYYKKASSKKGSTGENLLSLLECRLDNVVYRMGFASTRSEARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SH++ +VN K+VNI SY++ D ISVREKAKKQ+RI ++E+S W+ VD K
Sbjct: 120 VSHKSIVVNGKVVNIPSYQVSANDEISVREKAKKQSRIQLAVEISGQRGLSEWVDVDNKS 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
+G+FK+ P+R+E + DI++ L
Sbjct: 180 FKGIFKNVPSRNELSADISEHL 201
>gi|333985436|ref|YP_004514646.1| 30S ribosomal protein S4 [Methylomonas methanica MC09]
gi|333809477|gb|AEG02147.1| ribosomal protein S4 [Methylomonas methanica MC09]
Length = 206
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/200 (55%), Positives = 146/200 (73%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP KL RREG DLFLKS +SL+SKCKLD RPGQHG +R SDY Q R KQ
Sbjct: 1 MARYLGPVCKLSRREGTDLFLKSRGKSLESKCKLDQRPGQHG-AKRTRNSDYALQLRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+++R+YG+LEKQFR Y+ KG TG+ +L LESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 RLRRIYGVLEKQFRNYYKAADLQKGATGQNLLNFLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN +++NI SY++ GD +S+REKAK Q RI +L ++E W+ V+ K+M
Sbjct: 120 HKAIVVNGQLINIPSYQVVAGDTVSLREKAKNQQRIKEALVVAEQYGFPQWVEVNPKEMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R + ++IN+ L
Sbjct: 180 GTFKSLPDRVDLGSEINEQL 199
>gi|406040557|ref|ZP_11047912.1| 30S ribosomal protein S4 [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 207
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 146/201 (72%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ G + S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGQARG-KQSEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI N++EL+ +W+ VD K
Sbjct: 120 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSKF 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 180 EGTFKAAPDRSDLPAEINESL 200
>gi|389721951|ref|ZP_10188652.1| 30S ribosomal protein S4 [Rhodanobacter sp. 115]
gi|388444964|gb|EIM01053.1| 30S ribosomal protein S4 [Rhodanobacter sp. 115]
Length = 208
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 147/207 (71%), Gaps = 13/207 (6%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY G KL RREG DL LKS R+LDSKCKL+ +PGQHG R SDY Q REKQ
Sbjct: 1 MARYRGATCKLARREGSDLSLKSPARALDSKCKLENKPGQHGANKRMRMSDYAVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QF Y+ + + LKG TGE +L+LLESR DNVVYRMGF+ TR++ARQL++
Sbjct: 61 KVKRIYGVLERQFSNYYSKASTLKGNTGENLLRLLESRLDNVVYRMGFAVTRAQARQLVA 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPF-------SWIT 173
H+A LVN K VNI SY+++PGD+I++ EKA+ Q R+ E +T F +W+
Sbjct: 121 HKAVLVNDKKVNIPSYQVRPGDVIALTEKARSQLRV------QEAATVFDTMDLRPTWVE 174
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VDAKK G FK+ P+R + +DIN+ L
Sbjct: 175 VDAKKFAGTFKALPDRGDLPSDINEAL 201
>gi|424864877|ref|ZP_18288773.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86B]
gi|400759142|gb|EJP73327.1| ribosomal protein S4 [SAR86 cluster bacterium SAR86B]
Length = 207
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 147/200 (73%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP+ +L RREG DL+LKS R+++SKC +D PG G R SDYG Q REKQ
Sbjct: 1 MARYTGPRLRLSRREGTDLYLKSGIRAIESKCNMDSPPGAAGGARRGRLSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ + A KG TGE +L LLESR DNVVYRMGF STR+EARQ++S
Sbjct: 61 KVRRMYGVLEKQFRNYYKKAASSKGNTGENLLSLLESRMDNVVYRMGFGSTRAEARQMVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNI SY+I+PGD I VRE+ K Q RIA++L+++ WI VD ++
Sbjct: 121 HKAFKVNGNVVNIPSYQIQPGDEIEVRERKKGQLRIASALKIAASREECDWIEVDEANLK 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+KS P+R++ + +IN+ L
Sbjct: 181 GVYKSVPDRTDLSTEINENL 200
>gi|389799021|ref|ZP_10202027.1| 30S ribosomal protein S4 [Rhodanobacter sp. 116-2]
gi|388443947|gb|EIM00078.1| 30S ribosomal protein S4 [Rhodanobacter sp. 116-2]
Length = 208
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 145/207 (70%), Gaps = 13/207 (6%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY G KL RREG DL LKS R+LDSKCKL+ +PGQHG R SDY Q REKQ
Sbjct: 1 MARYRGATCKLARREGADLSLKSPARALDSKCKLENKPGQHGANKRMRMSDYAVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QF Y+ + LKG TGE +L+LLESR DNVVYRMGF+ TR++ARQL++
Sbjct: 61 KVKRIYGVLERQFSNYYTKATTLKGNTGENLLRLLESRLDNVVYRMGFAVTRAQARQLVA 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPF-------SWIT 173
H+A LVN K VNI SY+++PGD I++ E+A+ Q R+ E +T F W+
Sbjct: 121 HKAILVNGKKVNIPSYQVRPGDAIALTERARSQLRV------QEAATVFDTMDLRPGWVE 174
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD+KK EG FKS P+R + +DIN+ L
Sbjct: 175 VDSKKFEGTFKSVPDRGDLPSDINEAL 201
>gi|352086297|ref|ZP_08953838.1| ribosomal protein S4 [Rhodanobacter sp. 2APBS1]
gi|389807444|ref|ZP_10204114.1| 30S ribosomal protein S4 [Rhodanobacter thiooxydans LCS2]
gi|351679596|gb|EHA62733.1| ribosomal protein S4 [Rhodanobacter sp. 2APBS1]
gi|388444067|gb|EIM00188.1| 30S ribosomal protein S4 [Rhodanobacter thiooxydans LCS2]
Length = 208
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 144/207 (69%), Gaps = 13/207 (6%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY G KL RREG DL LKS R+LDSKCKL+ +PGQHG R SDY Q REKQ
Sbjct: 1 MARYRGATCKLARREGADLSLKSPARALDSKCKLENKPGQHGANKRMRMSDYAVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QF Y+ + LKG TGE +L+LLESR DNVVYRMGF+ TR++ARQL++
Sbjct: 61 KVKRIYGVLERQFSNYYTKATTLKGNTGENLLRLLESRLDNVVYRMGFAVTRAQARQLVA 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPF-------SWIT 173
H+A LVN K VNI SY+++PGD I++ E+A+ Q R+ E +T F W+
Sbjct: 121 HKAILVNGKKVNIPSYQVRPGDAIALTERARSQLRV------QEAATVFDTMDLRPGWVE 174
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD+KK EG FKS P+R + DIN+ L
Sbjct: 175 VDSKKFEGTFKSVPDRGDLPTDINEAL 201
>gi|25166523|dbj|BAC24713.1| rpsD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 225
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DLFLKS R+++SKCK+D PGQHG SR SDYG Q REKQ
Sbjct: 20 MAKYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDHLPGQHGS-RRSRLSDYGIQLREKQ 78
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++RMY ILE+QF++Y+ + R+KG TGE +L LLESR DNVVYRMGF STR E+RQLIS
Sbjct: 79 KLRRMYVILERQFKKYYKKAVRMKGNTGENLLILLESRLDNVVYRMGFGSTRLESRQLIS 138
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ ++NKK++NI SY+IKP D I V+E AKKQ+RI ++E+SE SWI VD KM+
Sbjct: 139 HKSIIINKKVINIPSYQIKPNDCIEVKEIAKKQSRIKAAIEISEQREKQSWIDVDRVKMQ 198
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+RS+ +++IN+ L
Sbjct: 199 GIFKKFPDRSDLSSEINEHL 218
>gi|161347492|ref|NP_871570.2| 30S ribosomal protein S4 [Wigglesworthia glossinidia endosymbiont
of Glossina brevipalpis]
gi|152031677|sp|Q8D1Y9.2|RS4_WIGBR RecName: Full=30S ribosomal protein S4
Length = 206
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 156/200 (78%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DLFLKS R+++SKCK+D PGQHG SR SDYG Q REKQ
Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDHLPGQHGS-RRSRLSDYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++RMY ILE+QF++Y+ + R+KG TGE +L LLESR DNVVYRMGF STR E+RQLIS
Sbjct: 60 KLRRMYVILERQFKKYYKKAVRMKGNTGENLLILLESRLDNVVYRMGFGSTRLESRQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ ++NKK++NI SY+IKP D I V+E AKKQ+RI ++E+SE SWI VD KM+
Sbjct: 120 HKSIIINKKVINIPSYQIKPNDCIEVKEIAKKQSRIKAAIEISEQREKQSWIDVDRVKMQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+RS+ +++IN+ L
Sbjct: 180 GIFKKFPDRSDLSSEINEHL 199
>gi|319760353|ref|YP_004124291.1| 30S ribosomal protein S4 [Candidatus Blochmannia vafer str. BVAF]
gi|318039067|gb|ADV33617.1| 30S ribosomal protein S4 [Candidatus Blochmannia vafer str. BVAF]
Length = 207
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 149/201 (74%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RRE DLFLKS RS+DSKC+ + PGQH I +R SDYG Q REKQ
Sbjct: 1 MAKYLGPKLKLSRRENTDLFLKSGIRSIDSKCRFEHSPGQHN-IRKARYSDYGMQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YGILE+QF Y+ + AR+KG TGEI+L+LLESR DNVVYRMGF STR+E+RQL+S
Sbjct: 60 KVKRIYGILERQFVNYYKKAARIKGNTGEILLQLLESRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTP-FSWITVDAKKM 179
H++ +VN ++VNI SY++ +I + ++K QTRI +LE++E WI VD+ K+
Sbjct: 120 HKSVVVNGRVVNIPSYQVMSDTVIQISTRSKHQTRIHAALEIAEQQRERVLWIEVDSIKL 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+G FK P RSE + +I++ L
Sbjct: 180 KGFFKRRPERSELSANIDEHL 200
>gi|389780924|ref|ZP_10194400.1| 30S ribosomal protein S4 [Rhodanobacter spathiphylli B39]
gi|388435585|gb|EIL92483.1| 30S ribosomal protein S4 [Rhodanobacter spathiphylli B39]
Length = 208
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 144/207 (69%), Gaps = 13/207 (6%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY G KL RREG DL LKS R+LDSKCKL+ +PGQHG R SDY Q REKQ
Sbjct: 1 MARYRGATCKLARREGADLSLKSPARALDSKCKLENKPGQHGANKRMRMSDYAVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QF Y+ + + KG TGE +L+LLESR DNVVYRMGF+ TR++ARQL++
Sbjct: 61 KVKRIYGVLERQFSNYYTKASTTKGNTGENLLRLLESRLDNVVYRMGFAVTRAQARQLVA 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFS-------WIT 173
H+A LVN K VNI SY+++PGD I++ EK + Q R+ E +T F W+
Sbjct: 121 HKAILVNGKKVNIPSYQVRPGDAIALTEKGRTQLRV------QEAATVFDTMDLRPIWVE 174
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VDAKK EG FKS P+R + +DIN+ L
Sbjct: 175 VDAKKFEGTFKSVPDRGDLPSDINEAL 201
>gi|390952404|ref|YP_006416163.1| 30S ribosomal protein S4 [Thiocystis violascens DSM 198]
gi|390428973|gb|AFL76038.1| ribosomal protein S4, bacterial/organelle type [Thiocystis
violascens DSM 198]
Length = 206
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 145/200 (72%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RREG DL LKS R+LD+KC L+ +PGQ R SDYG Q REKQ
Sbjct: 1 MARYTGPTCKLARREGTDLSLKSRARALDTKCNLEKQPGQTTD-RRRRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + A+ KG TGE +L+LLE R DNVV+RMGF STR+EARQL+S
Sbjct: 60 KVRRIYGLLEKQFRNYYKKAAQAKGATGENLLQLLERRLDNVVFRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN +IVN+ASY++ D + VRE +KKQ R+ N+L L+E W+ VD K ++
Sbjct: 120 HKSILVNGRIVNVASYQVSAEDQVEVREPSKKQLRVQNALSLAEQYGFPDWVEVDTKGLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+RS+ DIN+ L
Sbjct: 180 GVFKRVPDRSDLPADINESL 199
>gi|255319791|ref|ZP_05360996.1| ribosomal protein S4 [Acinetobacter radioresistens SK82]
gi|262380324|ref|ZP_06073478.1| ribosomal protein S4 [Acinetobacter radioresistens SH164]
gi|421466533|ref|ZP_15915212.1| ribosomal protein S4 [Acinetobacter radioresistens WC-A-157]
gi|421855343|ref|ZP_16287723.1| 30S ribosomal protein S4 [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|255303110|gb|EET82322.1| ribosomal protein S4 [Acinetobacter radioresistens SK82]
gi|262297770|gb|EEY85685.1| ribosomal protein S4 [Acinetobacter radioresistens SH164]
gi|400203313|gb|EJO34306.1| ribosomal protein S4 [Acinetobacter radioresistens WC-A-157]
gi|403189354|dbj|GAB73924.1| 30S ribosomal protein S4 [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 207
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 147/201 (73%), Gaps = 2/201 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K + PGQHG+ S ++ S+Y Q REK
Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGQ-SRAKQSEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKV+RMYG+LE+QF Y+ E AR+KG TGE +LKLLESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVRRMYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR+ +N + VNIAS ++K GD+I+V E AK+Q RI +++EL+ +WI VD K
Sbjct: 120 SHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKSAIELAAQRGIPAWIEVDHSKF 179
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG FK+ P+RS+ +IN+ L
Sbjct: 180 EGTFKAAPDRSDLPAEINESL 200
>gi|406946128|gb|EKD77418.1| hypothetical protein ACD_42C00336G0003 [uncultured bacterium]
Length = 206
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 143/188 (76%), Gaps = 1/188 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK +L RRE DL LKS R +++KCK D PGQH + G R +DY Q R KQ
Sbjct: 1 MAKYLGPKCRLARREKTDLGLKSGIRDIETKCKFDRTPGQHWQRRG-RVTDYATQLRMKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
++R YG+LEK+FR Y+ E R+KG TGE +L+LLESR DNVVYRMGF+ TR+EARQL+S
Sbjct: 60 LIRRYYGVLEKKFRLYYKEAERIKGSTGENLLRLLESRLDNVVYRMGFAVTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN +VNIASY +KPGDI+SVR+KAKKQ RI +++L++ P +W+ +D K++
Sbjct: 120 HKSILVNGHVVNIASYSVKPGDIVSVRDKAKKQLRITAAIDLAQQREPSTWVEIDTKELS 179
Query: 181 GVFKSEPN 188
GV+KS P+
Sbjct: 180 GVYKSFPD 187
>gi|295698627|ref|YP_003603282.1| 30S ribosomal protein S4 [Candidatus Riesia pediculicola USDA]
gi|291157482|gb|ADD79927.1| ribosomal protein S4 [Candidatus Riesia pediculicola USDA]
Length = 206
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 144/200 (72%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M RY+G K KL RREG DLFLKS R ++SKCK+D PGQHG SR SDYG QFREKQ
Sbjct: 1 MGRYLGAKLKLSRREGTDLFLKSNIRQIESKCKIDRFPGQHG-AKKSRLSDYGIQFREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGILE+QFRRY+++ ++LKG TGE +L LLE R DNVVYR+G STRSEARQL+S
Sbjct: 60 KLRRIYGILERQFRRYYMKSSKLKGNTGENLLVLLERRLDNVVYRIGLGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVNKKIVNI SY++ DII E + Q RI +S+ELS+ SW+ + ++KM
Sbjct: 120 HKSILVNKKIVNIPSYQVNIDDIIETSEFSSSQNRIKSSIELSQQREQVSWLEISSEKMR 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G P R + DIN+ L
Sbjct: 180 GRVLRLPVRDDLPTDINEHL 199
>gi|146329810|ref|YP_001210128.1| 30S ribosomal protein S4 [Dichelobacter nodosus VCS1703A]
gi|172047329|sp|A5EX95.1|RS4_DICNV RecName: Full=30S ribosomal protein S4
gi|146233280|gb|ABQ14258.1| 30S ribosomal protein S4 [Dichelobacter nodosus VCS1703A]
Length = 206
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 144/200 (72%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK +L RREG+DL LKS R +SKC ++ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCRLARREGVDLELKSGVRPSESKCNMNAAPGQHGGRRG-RLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KR YG+LE+QFR Y+ + + KG TGE +L LLE R DNVVYRMG+ STR+EARQL+S
Sbjct: 60 KLKRTYGVLERQFRNYYKKAVQQKGSTGENLLILLEQRLDNVVYRMGYGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A VN + V IASY+++ DI+SVRE+++KQ RI ++LE+++ WI VDA KM
Sbjct: 120 HGAIEVNGQRVTIASYQVQAEDIVSVREQSRKQIRIQSALEIAKQRGFVDWIEVDAAKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R + + DIN+ L
Sbjct: 180 GQFKRVPERIDLSADINESL 199
>gi|345870997|ref|ZP_08822946.1| ribosomal protein S4 [Thiorhodococcus drewsii AZ1]
gi|343921151|gb|EGV31875.1| ribosomal protein S4 [Thiorhodococcus drewsii AZ1]
Length = 206
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 143/200 (71%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RREG DL LKS RS+D+KC L+ +PGQ R SDYG Q REKQ
Sbjct: 1 MARYTGPTCKLARREGTDLSLKSRARSIDTKCNLEKQPGQTTDRR-RRLSDYGGQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ + A+ KG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKKAAQAKGATGENLLQLLERRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ LVN ++VNI SY++ D + VRE AKKQ R+ N++ L+E W+ VD K ++
Sbjct: 120 HKGILVNGRVVNIPSYQVTMEDQVEVREPAKKQVRVQNAMALAEQYGFPDWVEVDTKGLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+RS+ DIN+ L
Sbjct: 180 GVFKRIPDRSDLPADINESL 199
>gi|260770937|ref|ZP_05879866.1| SSU ribosomal protein S4p (S9e) [Vibrio furnissii CIP 102972]
gi|260614174|gb|EEX39364.1| SSU ribosomal protein S4p (S9e) [Vibrio furnissii CIP 102972]
Length = 188
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/182 (58%), Positives = 138/182 (75%), Gaps = 1/182 (0%)
Query: 19 LFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFI 78
+FLKS R++D+KCK+D PG HG G R S+YG Q REKQKV+R+YG+LEKQFR Y+
Sbjct: 1 MFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQKVRRIYGVLEKQFRNYYK 59
Query: 79 EGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKI 138
E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+SH+A LVN K+VN+ S+ +
Sbjct: 60 EAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAILVNGKVVNVPSFNV 119
Query: 139 KPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDIND 198
D++++REKAKKQ+RI +LE++E +WI VDA MEG FK P RS+ + DIN+
Sbjct: 120 AANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDASSMEGTFKRLPERSDLSADINE 179
Query: 199 LL 200
L
Sbjct: 180 QL 181
>gi|45644720|gb|AAS73108.1| predicted ribosomal protein S4 [uncultured marine gamma
proteobacterium EBAC20E09]
Length = 211
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 144/205 (70%), Gaps = 6/205 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLD-----LRPGQHGRISGSRTSDYGYQ 55
MARY GP +L RREG DL LKS R++++KC+ D PG HG + G R SDYG Q
Sbjct: 1 MARYRGPSLRLSRREGTDLLLKSGVRAIETKCRTDGNGGLKSPGVHGAMRG-RLSDYGLQ 59
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+RMYG+LEKQFR Y+ + A KG TGE +L LLE R DNVVYRMGF TR+EA
Sbjct: 60 LREKQKVRRMYGVLEKQFRNYYKKAASSKGNTGENLLSLLEKRLDNVVYRMGFGCTRAEA 119
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQ++SH+AF+VN VNI SY+++PGD I VRE K RIA +L+++ W+ VD
Sbjct: 120 RQMVSHKAFMVNGSTVNIPSYQVQPGDEIEVRESKKGHLRIAAALKIAATREECDWLEVD 179
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
K ++GVFKS P+R++ + +IN+ L
Sbjct: 180 DKNLKGVFKSVPDRTDLSAEINENL 204
>gi|37912969|gb|AAR05301.1| ribosomal protein S4 [uncultured marine gamma proteobacterium
EB000-45B06]
gi|40063200|gb|AAR38037.1| ribosomal protein S4 [uncultured marine bacterium 562]
Length = 207
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 141/200 (70%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP +L RREG DL+LKS R+++SKC +D PG R SDYG Q REKQ
Sbjct: 1 MARYTGPTLRLSRREGTDLYLKSGVRAIESKCNMDSPPGVAAGARRGRLSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ + A KG TGE +L LLE R DNVVYRMGF STR+EARQ++S
Sbjct: 61 KVRRMYGVLEKQFRNYYKKAASTKGNTGENLLSLLEKRMDNVVYRMGFGSTRAEARQMVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN ++VNI SY++K GD + VR+ K RIA +L+++ W+ VD ++
Sbjct: 121 HKAFKVNGEVVNIPSYQMKAGDEVQVRDNKKGHLRIAAALKIAATREDCDWLEVDEANLK 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFKS P+R++ + +IN+ L
Sbjct: 181 GVFKSVPDRTDLSTEINENL 200
>gi|213856915|ref|ZP_03384155.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 167
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 103/168 (61%), Positives = 132/168 (78%), Gaps = 1/168 (0%)
Query: 5 IGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKR 64
+GPK KL RREG DLFLKS R++D+KCK+ PGQHG R SDYG Q REKQKV+R
Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHG-ARKPRLSDYGVQLREKQKVRR 59
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 60 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 119
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWI 172
+VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+
Sbjct: 120 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL 167
>gi|359394356|ref|ZP_09187409.1| 30S ribosomal protein S4 [Halomonas boliviensis LC1]
gi|357971603|gb|EHJ94048.1| 30S ribosomal protein S4 [Halomonas boliviensis LC1]
Length = 182
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 133/173 (76%), Gaps = 1/173 (0%)
Query: 28 LDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKT 87
+ KCK + PG HG+ R SDYG Q REKQKV+RMYG+LEKQFR Y+ E ARLKG T
Sbjct: 4 FEKKCKSEQIPGVHGQ-RRQRLSDYGLQLREKQKVRRMYGVLEKQFRNYYKEAARLKGAT 62
Query: 88 GEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVR 147
GE++L+LLESR DNVVYRMGF STRSEARQL+SH+A VN + VN+ASY++KPGD++S+R
Sbjct: 63 GEVLLQLLESRLDNVVYRMGFGSTRSEARQLVSHKAISVNGRTVNVASYQVKPGDVVSIR 122
Query: 148 EKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
EKAK Q RI ++L ++ + +WI +DAKKMEG FK+ P R + + DIN+ L
Sbjct: 123 EKAKNQARIQSALSIAANRGDIAWIEIDAKKMEGTFKALPERGDLSADINENL 175
>gi|365966989|ref|YP_004948551.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|365745902|gb|AEW76807.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
ANH9381]
Length = 170
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/165 (64%), Positives = 132/165 (80%), Gaps = 1/165 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D+ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDIAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DN+VYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNIVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEH 165
H+A +VN ++VNI S+++ D+++VREK+KKQ RI SLEL+E
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQ 164
>gi|392952500|ref|ZP_10318055.1| 30S ribosomal protein S4 [Hydrocarboniphaga effusa AP103]
gi|391861462|gb|EIT71990.1| 30S ribosomal protein S4 [Hydrocarboniphaga effusa AP103]
Length = 206
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RR G DL LK RSL++KCKL+ PGQHG R SDY Q REKQ
Sbjct: 1 MARYIGPKCKLSRRAGADLLLKGRGRSLETKCKLETPPGQHG-ARKPRLSDYATQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+K+MYG+LE+QFR Y+ + + KG TG +L LE+R DNVVYR+GF TR+EARQL+
Sbjct: 60 KLKQMYGLLERQFRNYYYKATKTKGATGLNLLLALETRLDNVVYRIGFGRTRAEARQLVG 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI SY+++ GD++ VREK++ Q+RIA SL ++ W+ VD K ++
Sbjct: 120 HKAVLVNGKPVNIPSYQVQVGDVVEVREKSRTQSRIAESLSIAAQIGFPEWLEVDEKGLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R + DIN+ L
Sbjct: 180 GTFKSLPSRDQIVPDINENL 199
>gi|302877827|ref|YP_003846391.1| DNA-directed RNA polymerase subunit alpha [Gallionella
capsiferriformans ES-2]
gi|302580616|gb|ADL54627.1| DNA-directed RNA polymerase, alpha subunit [Gallionella
capsiferriformans ES-2]
Length = 322
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 183/309 (59%), Gaps = 90/309 (29%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
ND LKPRII+V+ + AKV+MEPFERG+G+TLGNALRR+LLSSM G APTEV +SG L
Sbjct: 4 NDFLKPRIIEVQKISETQAKVVMEPFERGFGHTLGNALRRILLSSMAGAAPTEVKMSGVL 63
Query: 257 HEYSSLEGVQE---DII--------------DIILNLK----GVI----------LKLYN 285
HEY++++GVQE DI+ +++L LK GV+ +++ N
Sbjct: 64 HEYATIDGVQEDVVDILLNLKGVVLRLHGVKEVVLTLKKEGFGVVTAADISANAEVEVLN 123
Query: 286 RDYAILNLKKFGKCVVLASDIEL--------LSDI--ELVNPNHIIAHLS---------- 325
++ I +L GK D+++ +S I +L N + H++
Sbjct: 124 PEHVIAHLTAGGKL-----DMQIKVEQGRGYVSAISRQLPNETRAVGHIALDASFSPVSR 178
Query: 326 -----------------------------DNEEAIRQSARVLVDQLNVFAALENTP--VK 354
D E+AIR +AR+LVDQ +VFAALE T V+
Sbjct: 179 VSYAVESARVEQRTDLDKLIMTIETNGAIDPEQAIRNAARILVDQFSVFAALEGTEPVVE 238
Query: 355 KELDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKS 414
KE + +VDPILLRPVDDLELT RS+NCLKA++IH IGDLIQ SEN+LLRTPNLGRKS
Sbjct: 239 KE---HVPQVDPILLRPVDDLELTPRSSNCLKAQSIHYIGDLIQYSENDLLRTPNLGRKS 295
Query: 415 LNEIKEILA 423
LNEIK++LA
Sbjct: 296 LNEIKQVLA 304
>gi|149192393|ref|ZP_01870594.1| 30S ribosomal protein S4 [Vibrio shilonii AK1]
gi|148833784|gb|EDL50820.1| 30S ribosomal protein S4 [Vibrio shilonii AK1]
Length = 172
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/165 (63%), Positives = 133/165 (80%), Gaps = 1/165 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEH 165
H+A LVN K+VN+ S+K+ D++S+REKAK+Q RI +LE++++
Sbjct: 120 HKAILVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVADN 164
>gi|387128143|ref|YP_006296748.1| 30S ribosomal protein S4 [Methylophaga sp. JAM1]
gi|386275205|gb|AFI85103.1| SSU ribosomal protein S4p (S9e) [Methylophaga sp. JAM1]
Length = 206
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 140/200 (70%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M +Y GP KL RREG DLFLKS L+SKCK++ +PGQHG G R SDY Q R KQ
Sbjct: 1 MGKYRGPTCKLSRREGTDLFLKSRGNPLESKCKVEQKPGQHGARRG-RESDYAVQLRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+++RMYG+LEKQFR Y+ + KG TG +L LE R DNVVYRMGF STR+E+RQL+S
Sbjct: 60 RIRRMYGVLEKQFRNYYKLADQKKGATGVNLLNFLEQRLDNVVYRMGFGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++ NIASY+++ GD++ +REKAKKQ RI N++ ++E WI V+ + +
Sbjct: 120 HKAIMVNGRVTNIASYQVQEGDVVEIREKAKKQERIVNAMSVAEQLGFPEWIEVNTQALS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R E ++++ L
Sbjct: 180 GVFKRAPERDELPAELSENL 199
>gi|241763535|ref|ZP_04761587.1| DNA-directed RNA polymerase, alpha subunit [Acidovorax delafieldii
2AN]
gi|407941056|ref|YP_006856697.1| DNA-directed RNA polymerase subunit alpha [Acidovorax sp. KKS102]
gi|241367266|gb|EER61606.1| DNA-directed RNA polymerase, alpha subunit [Acidovorax delafieldii
2AN]
gi|407898850|gb|AFU48059.1| DNA-directed RNA polymerase subunit alpha [Acidovorax sp. KKS102]
Length = 330
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 183/312 (58%), Gaps = 86/312 (27%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKAINVEQLGHNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDII-----------------DIILNLK----GVI----------LKLYNR 286
EYSS++GVQED++ ++ L+L+ GV+ +++ N
Sbjct: 64 EYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVNP 123
Query: 287 DYAILNL-------------------------------KKFGKCVVLAS---------DI 306
D+ I NL K G+ V+ AS +
Sbjct: 124 DHVIANLSAGGKLDMQIKVEKGRGYVPGNLRRYADESTKSIGRIVLDASFSPVKRVSYTV 183
Query: 307 ELLSDIELVNPNHIIAHLSDN-----EEAIRQSARVLVDQLNVFAALE-------NTPVK 354
E + + + ++ + N E+A+R SA++LV+QL VFA LE + P
Sbjct: 184 ESARVEQRTDLDKLVVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDAPAG 243
Query: 355 KELDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKS 414
+++ DPILLRPVD+LELTVRSANCLKAENI+ IGDLIQR+ENELL+TPNLGRKS
Sbjct: 244 PRGNATF---DPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKS 300
Query: 415 LNEIKEILASRG 426
LNEIKE+LASRG
Sbjct: 301 LNEIKEVLASRG 312
>gi|351732598|ref|ZP_08950289.1| DNA-directed RNA polymerase subunit alpha [Acidovorax radicis N35]
gi|365096212|ref|ZP_09330924.1| DNA-directed RNA polymerase subunit alpha [Acidovorax sp. NO-1]
gi|363413898|gb|EHL21084.1| DNA-directed RNA polymerase subunit alpha [Acidovorax sp. NO-1]
Length = 330
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 183/312 (58%), Gaps = 86/312 (27%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKAINVEQLGHNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDII-----------------DIILNLK----GVI----------LKLYNR 286
EYSS++GVQED++ ++ L+L+ GV+ +++ N
Sbjct: 64 EYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVNP 123
Query: 287 DYAILNL-------------------------------KKFGKCVVLAS---------DI 306
D+ I NL K G+ V+ AS +
Sbjct: 124 DHVIANLSAGGKLDMQIKVEKGRGYVPGSLRRYADESTKSIGRIVLDASFSPVKRVSYTV 183
Query: 307 ELLSDIELVNPNHIIAHLSDN-----EEAIRQSARVLVDQLNVFAALE-------NTPVK 354
E + + + ++ + N E+A+R SA++LV+QL VFA LE + P
Sbjct: 184 ESARVEQRTDLDKLVVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDAPAG 243
Query: 355 KELDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKS 414
+++ DPILLRPVD+LELTVRSANCLKAENI+ IGDLIQR+ENELL+TPNLGRKS
Sbjct: 244 PRGNATF---DPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKS 300
Query: 415 LNEIKEILASRG 426
LNEIKE+LASRG
Sbjct: 301 LNEIKEVLASRG 312
>gi|386017400|ref|YP_005935698.1| 30S ribosomal protein S4 RpsD, partial [Pantoea ananatis AJ13355]
gi|327395480|dbj|BAK12902.1| 30S ribosomal protein S4 RpsD [Pantoea ananatis AJ13355]
Length = 176
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 102/169 (60%), Positives = 131/169 (77%), Gaps = 1/169 (0%)
Query: 32 CKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEII 91
CK++ PGQHG R SDYG Q REKQKV+RMYG+LE+QFR Y+ E ARLKG TGE +
Sbjct: 2 CKIEQAPGQHG-ARKPRLSDYGGQLREKQKVRRMYGVLERQFRNYYKEAARLKGNTGENL 60
Query: 92 LKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAK 151
L LLE R DNVVYRMGF +TR+EARQL+SH++ LVN ++VNIASY++ P D++S+REKAK
Sbjct: 61 LALLEGRLDNVVYRMGFGATRAEARQLVSHKSVLVNGRVVNIASYQVSPNDVVSIREKAK 120
Query: 152 KQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
KQ+R+ +LEL+E +W+ VDA KMEGVFK P R++ + DIN+ L
Sbjct: 121 KQSRVKAALELAEQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHL 169
>gi|383315994|ref|YP_005376836.1| 30S ribosomal protein S4 [Frateuria aurantia DSM 6220]
gi|379043098|gb|AFC85154.1| ribosomal protein S4, bacterial/organelle type [Frateuria aurantia
DSM 6220]
Length = 208
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/202 (53%), Positives = 143/202 (70%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY G KL RREG DL LKS R+LDSKCKL+ +PGQHG +R SDY Q REKQ
Sbjct: 1 MARYRGATCKLARREGADLSLKSPARALDSKCKLENKPGQHGANKRARLSDYAVQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QF Y+ + + KG TGE +L+LLE R DNVVYRMGF+ TR++ARQL+S
Sbjct: 61 KVKRIYGVLERQFSNYYTKASTQKGNTGENLLRLLECRLDNVVYRMGFAVTRAQARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHST--PFSWITVDAKK 178
H+ LVN K VNI SY+++PGD +S+ E+A+ Q R+ + ++E P W+ V+A K
Sbjct: 121 HKGVLVNGKKVNIPSYQVRPGDEVSLTERARNQLRVKEAGTVAETMDLRPM-WVEVEAGK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
G FK+ P+R + +DIN+ L
Sbjct: 180 FAGTFKALPDRGDLPSDINENL 201
>gi|335420847|ref|ZP_08551882.1| ribosomal protein S4 [Salinisphaera shabanensis E1L3A]
gi|334894149|gb|EGM32356.1| ribosomal protein S4 [Salinisphaera shabanensis E1L3A]
Length = 207
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 139/200 (69%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y GPK KL RR G DLFLK RSL+ KCK+D PG G R SDY Q REKQ
Sbjct: 1 MAKYTGPKCKLSRRAGTDLFLKGRGRSLEGKCKIDTPPGAQGTQRRQRLSDYALQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++ MYG+LEKQFR Y+ + A+ KG TG ++L+ LE+R DNVVYRMGF+STR+EARQL++
Sbjct: 61 KLRHMYGVLEKQFRNYYKKAAQNKGATGVVLLQQLETRLDNVVYRMGFASTRAEARQLVN 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN VNI SY++K GD +++R +AK Q RI SL+++ W+ VD K ++
Sbjct: 121 HKAVAVNDYPVNIPSYEVKVGDTVAIRNRAKHQPRIIESLQVASQLGLSEWVEVDEKGLK 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+R + DIN+ L
Sbjct: 181 GTFKAVPDRDQVLPDINENL 200
>gi|406975926|gb|EKD98532.1| hypothetical protein ACD_23C00385G0002, partial [uncultured
bacterium]
Length = 326
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 182/311 (58%), Gaps = 86/311 (27%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G LHE
Sbjct: 1 LLKPKAINVEQLGHNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVLHE 60
Query: 259 YSSLEGVQEDII-----------------DIILNLK----GVI----------LKLYNRD 287
YSS++GVQED++ ++ L+L+ GV+ +++ N D
Sbjct: 61 YSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVNPD 120
Query: 288 YAILNL-------------------------------KKFGKCVVLAS---------DIE 307
+ I NL K G+ V+ AS +E
Sbjct: 121 HVIANLSAGGKLDMQIKVEKGRGYVPGNLRRYADESTKSIGRIVLDASFSPVKRVSYTVE 180
Query: 308 LLSDIELVNPNHIIAHLSDN-----EEAIRQSARVLVDQLNVFAALE-------NTPVKK 355
+ + + ++ + N E+A+R SA++LV+QL VFA LE + P
Sbjct: 181 SARVEQRTDLDKLVVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDAPAGP 240
Query: 356 ELDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSL 415
+++ DPILLRPVD+LELTVRSANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSL
Sbjct: 241 RGNATF---DPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSL 297
Query: 416 NEIKEILASRG 426
NEIKE+LASRG
Sbjct: 298 NEIKEVLASRG 308
>gi|336233406|ref|YP_004590152.1| 30S ribosomal protein S4 [Buchnera aphidicola (Cinara tujafilina)]
gi|335345347|gb|AEH39893.1| 30S ribosomal protein S4 [Buchnera aphidicola (Cinara tujafilina)]
Length = 206
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/200 (55%), Positives = 143/200 (71%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KL RREG DL LKS R+++SKCK+D PGQHG R S+YG Q REKQ
Sbjct: 1 MAKYLGPKLKLIRREGSDLLLKSGVRAIESKCKIDRAPGQHGS-RKLRLSEYGIQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQF Y+ + A+LKG +G +L LLE R DN++YRMGF STRSE+RQLIS
Sbjct: 60 KVRRLYGVLEKQFHNYYKKAAKLKGNSGNNLLSLLERRLDNIIYRMGFGSTRSESRQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ LVN KIVNI S+++ D IS+RE++K Q RI +LEL W+ ++ +KME
Sbjct: 120 HKSVLVNNKIVNIPSFQVSLNDKISIRERSKNQIRIKAALELMIQREKPDWLEINNEKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G K P RS+ DIN+ L
Sbjct: 180 GYIKRIPVRSDVLLDINEHL 199
>gi|335042314|ref|ZP_08535341.1| ribosomal protein S4 and related protein [Methylophaga
aminisulfidivorans MP]
gi|333788928|gb|EGL54810.1| ribosomal protein S4 and related protein [Methylophaga
aminisulfidivorans MP]
Length = 206
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 138/200 (69%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M +Y GP KL RREG DLFLKS ++SKCK++ +PGQHG G R SDY Q R KQ
Sbjct: 1 MGKYRGPTCKLSRREGTDLFLKSRGNPIESKCKIETKPGQHGARRG-RDSDYALQLRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+++R+YG+LEKQFR Y+ + KG TG +L +LE R DNVVYRMGFS TR+EARQL+S
Sbjct: 60 RIRRIYGVLEKQFRNYYKSADQKKGATGVNLLSMLEQRLDNVVYRMGFSGTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K NI SY++K GD++ +REKAKKQ RIAN++ ++E W+ V+ K
Sbjct: 120 HKAILVNGKATNIPSYQVKEGDVVEIREKAKKQERIANAMSVAEQLGFPEWVEVNTKAFS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R E ++++ L
Sbjct: 180 GTFKRLPERDELPAELSENL 199
>gi|406942200|gb|EKD74491.1| hypothetical protein ACD_44C00425G0003 [uncultured bacterium]
Length = 206
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/200 (53%), Positives = 142/200 (71%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MAR +G K+ RREG DL LKS R +DSKCKL PG HG+ G R S++G QFR+KQ
Sbjct: 1 MARKLGSVCKMMRREGSDLSLKSGVRPIDSKCKLATPPGVHGQKKG-RLSEFGVQFRQKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
++R+YG+LEKQF Y+ ++ K TGE++L+LLESR DNVVYRMGF+STR+EARQL+S
Sbjct: 60 MLRRIYGVLEKQFHNYYKLASKSKAATGEVLLQLLESRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR VN K VNI SY++ PGDI+ VREKAK Q RI +L L+++ +W+ VD +++
Sbjct: 120 HRCITVNAKTVNIPSYRVCPGDIVEVREKAKAQNRIQAALALAQNRAQPAWLEVDNGQLK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R+E + + L
Sbjct: 180 GTFKMLPDRNELPAEYREHL 199
>gi|406980290|gb|EKE01915.1| 30S ribosomal protein S4 [uncultured bacterium]
Length = 207
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 139/196 (70%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+YIGPK +L RREG+DL KS RSLDSKCK + PGQ G +G + +DY Q R KQ
Sbjct: 1 MAKYIGPKCRLSRREGVDLQHKSRARSLDSKCKAETPPGQFGDRAGKKPTDYSVQLRMKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+KR YGILEKQF Y+ R KG TGE +++LLESR DNVVYR+GF++TR+EARQL+
Sbjct: 61 LIKRYYGILEKQFHNYYKTADRRKGSTGENLIRLLESRLDNVVYRLGFAATRAEARQLVG 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY ++ D ++++EK KKQ+RI+ S+EL+E W+T+D+ KM
Sbjct: 121 HKAITVNGKTVNIPSYLVEANDEVAIKEKNKKQSRISASIELAEKGVIPEWLTLDSVKMS 180
Query: 181 GVFKSEPNRSEFANDI 196
G+FK P+ EF +
Sbjct: 181 GIFKRYPDVGEFPPEF 196
>gi|257454070|ref|ZP_05619344.1| ribosomal protein S4 [Enhydrobacter aerosaccus SK60]
gi|257448548|gb|EEV23517.1| ribosomal protein S4 [Enhydrobacter aerosaccus SK60]
Length = 213
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 147/208 (70%), Gaps = 10/208 (4%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCK-LDLRPGQHGRISGSRTSDYGYQFREK 59
MARY+GPK KL RREG DL LKS ++ + K K D PGQHG S+TS+Y Q REK
Sbjct: 1 MARYLGPKLKLSRREGTDLQLKSGVKAYEEKTKKADRAPGQHGNPR-SKTSEYSAQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QF Y+ E AR+KG TGE +L++LE R DNVVYRMGF +TR+EARQL+
Sbjct: 60 QKVKRIYGVLERQFSNYYKEAARMKGATGENLLQMLERRLDNVVYRMGFGATRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELS-EHSTPFSWI 172
SHRA LV K VNI S +++ GD+I+V EKAK+Q RI N++EL+ + TP W+
Sbjct: 120 SHRAILVKKAGRDEFVRVNIPSIQLQDGDVIAVHEKAKEQLRIKNAIELAGQRGTPV-WL 178
Query: 173 TVDAKKMEGVFKSEPNRSEFANDINDLL 200
VD K++G FK P R++ +IN+ L
Sbjct: 179 EVDHSKLQGTFKQAPERADLPTEINESL 206
>gi|160871805|ref|ZP_02061937.1| ribosomal protein S4 [Rickettsiella grylli]
gi|159120604|gb|EDP45942.1| ribosomal protein S4 [Rickettsiella grylli]
Length = 206
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/200 (55%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RR G DL LKS R+LDSKCKL PG G R S+YG R+KQ
Sbjct: 1 MARYRGPTCKLARRLGTDLQLKSGIRALDSKCKLATPPGMQPAKRG-RLSEYGVLLRQKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
++ YGILE+QFR Y+ + ++ KG TGE +LKLLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 LIRHTYGILERQFRLYYTKASKRKGITGENLLKLLECRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN IVNI SY++K GD+I ++EK+K QTRI ++EL++ +WI VD+ +++
Sbjct: 120 HRAVKVNSTIVNIPSYQVKVGDVIEIKEKSKSQTRIQAAIELTKQKPQPAWIDVDSTQLQ 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P RSE + N+ L
Sbjct: 180 GVFKLIPERSELPLEFNENL 199
>gi|397171440|ref|ZP_10494844.1| 30S ribosomal protein S4 [Alishewanella aestuarii B11]
gi|396086903|gb|EJI84509.1| 30S ribosomal protein S4 [Alishewanella aestuarii B11]
Length = 182
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 131/175 (74%), Gaps = 1/175 (0%)
Query: 26 RSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKG 85
R++DSKC L PGQHG G R SDYG Q REKQKV+R+YG+LEKQFR Y+ E ARLKG
Sbjct: 2 RAIDSKCNLTTAPGQHGARRG-RLSDYGLQLREKQKVRRIYGVLEKQFRNYYKEAARLKG 60
Query: 86 KTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIIS 145
TGE +L LLESR DNVVYRMG +STR+EARQL+SH+A +++ ++VN+ S+ + P +++
Sbjct: 61 NTGENLLALLESRLDNVVYRMGLASTRAEARQLVSHKAIMLDGRVVNVPSHTVLPEQVVA 120
Query: 146 VREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
VREKAKKQ RI +LEL+ +WI VD K+EGVFK P RS+ + DIN+ L
Sbjct: 121 VREKAKKQARIGAALELAAQREKPTWIEVDTTKLEGVFKRLPERSDLSADINEQL 175
>gi|163859245|ref|YP_001633543.1| DNA-directed RNA polymerase subunit alpha [Bordetella petrii DSM
12804]
gi|229564247|sp|A9IHR6.1|RPOA_BORPD RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|163262973|emb|CAP45276.1| DNA-directed RNA polymerase alpha chain [Bordetella petrii]
Length = 328
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 136/314 (43%), Positives = 182/314 (57%), Gaps = 95/314 (30%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G++HAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGTHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YS--------------SLEGV-----QEDIIDIIL--NLKGVIL----------KLYNRD 287
YS +L+GV D + ++L N G ++ ++ N D
Sbjct: 66 YSTIPGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNGAGTVVASDIELPHDVEIINPD 125
Query: 288 YAILNLKKFGKC---------------------------------------------VVL 302
+ I NL + GK V
Sbjct: 126 HLICNLTEAGKVEMQIKVEKGRGYVPGNVRALSEDRTHTIGRIVLDASFSPVRRVSYAVE 185
Query: 303 ASDIELLSDIEL----VNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENT------P 352
++ +E +D++ + N +I+ EEA+RQSAR+L+DQ++VFAALE P
Sbjct: 186 SARVEQRTDLDKLVLDIETNGVIS----PEEAVRQSARILMDQISVFAALEGAGDSYEAP 241
Query: 353 VKKELDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGR 412
V+ ++DP+LLRPVDDLELTVRSANCLKAENI+ IGDLIQR+ENELL+TPNLGR
Sbjct: 242 VR-----GTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGR 296
Query: 413 KSLNEIKEILASRG 426
KSLNEIKE+LA+RG
Sbjct: 297 KSLNEIKEVLAARG 310
>gi|430376163|ref|ZP_19430566.1| 30S ribosomal protein S4 [Moraxella macacae 0408225]
gi|429541394|gb|ELA09422.1| 30S ribosomal protein S4 [Moraxella macacae 0408225]
Length = 213
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 147/208 (70%), Gaps = 10/208 (4%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARY+GPK KL RREG DL LKS ++ + K K R PGQHG S+TS+Y Q REK
Sbjct: 1 MARYLGPKLKLSRREGTDLQLKSGVKAYEEKTKKAGRAPGQHGNPR-SKTSEYSAQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKRMYG+LE+QF Y+ E AR++G TGE +L++LE R DNVVYRMGF +TR+EARQL+
Sbjct: 60 QKVKRMYGVLERQFSNYYKEAARMRGATGENLLQMLERRLDNVVYRMGFGATRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLEL-SEHSTPFSWI 172
SHRA LV K VNI S +I+ GD+I+V EK+K+Q RI N++EL + TP +W+
Sbjct: 120 SHRAILVKKAGRDEFVRVNIPSIQIQDGDVIAVHEKSKEQLRIKNAIELVGQRGTP-AWL 178
Query: 173 TVDAKKMEGVFKSEPNRSEFANDINDLL 200
VD K++G FK P+R E +IN+ L
Sbjct: 179 EVDHSKLQGTFKQAPDRVELPAEINENL 206
>gi|289804412|ref|ZP_06535041.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 175
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/169 (59%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Query: 32 CKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEII 91
KL PGQHG R SDYG Q REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +
Sbjct: 1 VKLGQAPGQHG-ARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENL 59
Query: 92 LKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAK 151
L LLE R DNVVYRMGF +TR+EARQL+SH+A +VN ++VNIASY++ P D++S+REKAK
Sbjct: 60 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 119
Query: 152 KQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
KQ+R+ +LEL+E +W+ VDA KMEG +K +P RS+ + DIN+ L
Sbjct: 120 KQSRVKAALELAEQREKPTWLEVDAGKMEGTYKRKPERSDLSADINEHL 168
>gi|381158303|ref|ZP_09867536.1| ribosomal protein S4, bacterial/organelle type [Thiorhodovibrio sp.
970]
gi|380879661|gb|EIC21752.1| ribosomal protein S4, bacterial/organelle type [Thiorhodovibrio sp.
970]
Length = 206
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 140/200 (70%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RREG DL LKS R LD KC L+ PGQ R SDYG Q REKQ
Sbjct: 1 MARYTGPTCKLARREGTDLGLKSRARPLDQKCNLEKMPGQAADRR-RRLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG++E+QFR Y+ AR+KG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVMERQFRNYYKTAARIKGATGENLLQLLERRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN + VNI S+++ D + +REK+++Q R+ +++ L+E + WI VD K +
Sbjct: 120 HKSVIVNGRAVNIPSFQVSVEDEVEIREKSRQQVRVQSAVALAEGAGFPDWIEVDTKGFK 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P R++ DIN+ L
Sbjct: 180 GVFKRIPERADLPADINESL 199
>gi|296113774|ref|YP_003627712.1| 30S ribosomal protein S4 [Moraxella catarrhalis RH4]
gi|416156515|ref|ZP_11604554.1| 30S ribosomal protein S4 [Moraxella catarrhalis 101P30B1]
gi|416216049|ref|ZP_11623450.1| 30S ribosomal protein S4 [Moraxella catarrhalis 7169]
gi|416220601|ref|ZP_11625525.1| 30S ribosomal protein S4 [Moraxella catarrhalis 103P14B1]
gi|416228050|ref|ZP_11627402.1| 30S ribosomal protein S4 [Moraxella catarrhalis 46P47B1]
gi|416239511|ref|ZP_11631984.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC1]
gi|416243842|ref|ZP_11634107.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC7]
gi|416245551|ref|ZP_11634534.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC8]
gi|416249243|ref|ZP_11636419.1| 30S ribosomal protein S4 [Moraxella catarrhalis CO72]
gi|416256128|ref|ZP_11639548.1| 30S ribosomal protein S4 [Moraxella catarrhalis O35E]
gi|295921468|gb|ADG61819.1| 30S ribosomal protein S4 [Moraxella catarrhalis BBH18]
gi|326562119|gb|EGE12447.1| 30S ribosomal protein S4 [Moraxella catarrhalis 7169]
gi|326564516|gb|EGE14742.1| 30S ribosomal protein S4 [Moraxella catarrhalis 46P47B1]
gi|326566268|gb|EGE16420.1| 30S ribosomal protein S4 [Moraxella catarrhalis 103P14B1]
gi|326567080|gb|EGE17202.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC1]
gi|326568344|gb|EGE18424.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC7]
gi|326572245|gb|EGE22240.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC8]
gi|326574587|gb|EGE24527.1| 30S ribosomal protein S4 [Moraxella catarrhalis O35E]
gi|326574843|gb|EGE24773.1| 30S ribosomal protein S4 [Moraxella catarrhalis 101P30B1]
gi|326576167|gb|EGE26082.1| 30S ribosomal protein S4 [Moraxella catarrhalis CO72]
Length = 213
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/207 (54%), Positives = 143/207 (69%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K R PGQHG S ++TS+Y Q REK
Sbjct: 1 MARYIGPKLKLSRREGTDLQLKSGVKPYDVKTKKAGRVPGQHGN-SQNKTSEYASQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKRMYG+LE+QF Y+ E AR +G TGE +L LE R DNVVYRMGF +TR+EARQL+
Sbjct: 60 QKVKRMYGVLERQFSNYYKEAARERGATGENLLVTLERRLDNVVYRMGFGATRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
SHRA ++ K VNI S +++ GD+I+V EK+K+Q RI N++EL+ +W+
Sbjct: 120 SHRAIMLKKAGRDEFVRVNIPSIQVQDGDVIAVHEKSKEQLRIKNAVELATQRGIPAWLE 179
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD K++G FKS P RSE +IN+ L
Sbjct: 180 VDHSKLQGTFKSAPERSELPAEINENL 206
>gi|421780572|ref|ZP_16217060.1| 30S ribosomal protein S4 [Moraxella catarrhalis RH4]
gi|407812260|gb|EKF83046.1| 30S ribosomal protein S4 [Moraxella catarrhalis RH4]
Length = 213
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/207 (54%), Positives = 142/207 (68%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K R PGQHG S ++TS+Y Q REK
Sbjct: 1 MARYIGPKLKLSRREGTDLQLKSGVKPYDVKTKKAGRVPGQHGN-SQNKTSEYASQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKRMYG+LE+QF Y+ E AR +G TGE +L LE R DNVVYRMGF +TR+EARQL+
Sbjct: 60 QKVKRMYGVLERQFSNYYKEAARERGATGENLLVTLERRLDNVVYRMGFGATRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
SHRA ++ K VNI S +++ GD+I+V EK+K Q RI N++EL+ +W+
Sbjct: 120 SHRAIMLKKAGRDEFVRVNIPSIQVQDGDVIAVHEKSKDQLRIKNAVELATQRGIPAWLE 179
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD K++G FKS P RSE +IN+ L
Sbjct: 180 VDHSKLQGAFKSAPERSELPAEINENL 206
>gi|116515235|ref|YP_802864.1| 30S ribosomal protein S4 [Buchnera aphidicola BCc]
gi|122285369|sp|Q057C8.1|RS4_BUCCC RecName: Full=30S ribosomal protein S4
gi|58384668|gb|AAW72683.1| ribosomal protein S4 [Buchnera aphidicola (Cinara cedri)]
gi|116257089|gb|ABJ90771.1| 30S ribosomal protein S4 [Buchnera aphidicola BCc]
Length = 206
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 142/200 (71%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+Y+GPK KLCRRE DLFLKS R+++SKC +D PGQHG R S+Y Q REKQ
Sbjct: 1 MAKYLGPKLKLCRRENSDLFLKSGVRTIESKCNIDQAPGQHGS-RKLRLSEYAKQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YGILEKQF Y+ + ++LKG TG+ +L LLESR DN+VYR+GF +TR EARQLI+
Sbjct: 60 KLRRLYGILEKQFHNYYKKASKLKGNTGQNLLFLLESRLDNIVYRLGFGTTRLEARQLIN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN KIV+ S+++ D ISV +K+K Q RI SLE+ + SW+++D ME
Sbjct: 120 HKSICVNNKIVSFPSFQVSIDDKISVVKKSKNQLRIKASLEIMKQKEKPSWLSIDYPNME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVF R + ++DIN+ L
Sbjct: 180 GVFLRSIERDDLSSDINEHL 199
>gi|253998040|ref|YP_003050103.1| 30S ribosomal protein S4 [Methylovorus glucosetrophus SIP3-4]
gi|313200105|ref|YP_004038763.1| 30S ribosomal protein S4 [Methylovorus sp. MP688]
gi|253984719|gb|ACT49576.1| ribosomal protein S4 [Methylovorus glucosetrophus SIP3-4]
gi|312439421|gb|ADQ83527.1| ribosomal protein S4 [Methylovorus sp. MP688]
Length = 209
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ R SDYG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE QFR Y+ E RLKG TGE +L+LLE R DNV YRMG S+R+EARQ
Sbjct: 60 EKQKVRRIYGILEGQFRSYYAEADRLKGITGENLLQLLECRLDNVAYRMGLGSSRTEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H + LVN K VNI SY+++PGD++ V E +K Q RI +LE +E W+ VD K
Sbjct: 120 IVRHNSILVNGKRVNIPSYQVRPGDVVQVAEASKSQLRIKGALEAAEQRGFPEWLEVDVK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++G FK++P R E IN+ L
Sbjct: 180 ALKGTFKAKPQRDELPATINESL 202
>gi|400286835|ref|ZP_10788867.1| 30S ribosomal protein S4 [Psychrobacter sp. PAMC 21119]
Length = 213
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 144/207 (69%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP-GQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K RP GQHG +S ++TS+Y Q REK
Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKAGRPPGQHG-VSRNKTSEYALQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QF Y+ E AR +G TGE +L +LESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVKRIYGVLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
SHR +V K VNI S +++ GD+I+++EK+++Q RI N++EL+ W+
Sbjct: 120 SHRTVMVKKAGRDEFVRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWLD 179
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD K++G FK P+R + +IN+ L
Sbjct: 180 VDHSKLQGTFKQAPDRIDLPAEINESL 206
>gi|406904062|gb|EKD45954.1| 30S ribosomal protein S4 [uncultured bacterium]
Length = 206
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 139/192 (72%), Gaps = 1/192 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MA+YIGPK +L RREG+DL KS RSL+SKCK ++ PGQ G +G R +DY Q R KQ
Sbjct: 1 MAKYIGPKCRLSRREGVDLQHKSKARSLESKCKANVPPGQFGERAG-RATDYSVQLRMKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+KR YGILEKQF Y+ E R KG GE +++LLESR DNVVYR+GF+ TR+EARQ+++
Sbjct: 60 LIKRYYGILEKQFHNYYKEADRRKGSAGENLIRLLESRLDNVVYRLGFAVTRAEARQMVN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN K V+I SY ++ D I+VREK+KKQ R+A +++++E W+++D KKM
Sbjct: 120 HKSITVNGKTVSIPSYLVEANDEIAVREKSKKQGRVAAAIDIAEKGVLSEWLSLDGKKMT 179
Query: 181 GVFKSEPNRSEF 192
GVFK P+ EF
Sbjct: 180 GVFKRCPDVGEF 191
>gi|93005338|ref|YP_579775.1| 30S ribosomal protein S4 [Psychrobacter cryohalolentis K5]
gi|122415887|sp|Q1QDG2.1|RS4_PSYCK RecName: Full=30S ribosomal protein S4
gi|92393016|gb|ABE74291.1| SSU ribosomal protein S4P [Psychrobacter cryohalolentis K5]
Length = 213
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 144/207 (69%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP-GQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K RP GQHG +S +++S+Y Q REK
Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKSARPPGQHG-VSRNKSSEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QF Y+ E AR +G TGE +L +LESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVKRIYGVLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
SHR +V K VNI S +++ GD+I+++EK+++Q RI N++EL+ W+
Sbjct: 120 SHRTVMVKKAGRDEFIRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWLD 179
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD K++G FK P+R + +IN+ L
Sbjct: 180 VDHSKLQGTFKKAPDRIDLPAEINESL 206
>gi|71065083|ref|YP_263810.1| 30S ribosomal protein S4 [Psychrobacter arcticus 273-4]
gi|90101710|sp|Q4FUD2.1|RS4_PSYA2 RecName: Full=30S ribosomal protein S4
gi|71038068|gb|AAZ18376.1| SSU ribosomal protein S4P [Psychrobacter arcticus 273-4]
Length = 213
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 144/207 (69%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP-GQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K RP GQHG +S +++S+Y Q REK
Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKSARPPGQHG-VSRNKSSEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKR+YG+LE+QF Y+ E AR +G TGE +L +LESR DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVKRIYGVLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
SHR +V K VNI S +++ GD+I+++EK+++Q RI N++EL+ W+
Sbjct: 120 SHRTVMVKKAGRDEFVRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWLD 179
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD K++G FK P+R + +IN+ L
Sbjct: 180 VDHSKLQGTFKKAPDRIDLPAEINESL 206
>gi|148652261|ref|YP_001279354.1| 30S ribosomal protein S4 [Psychrobacter sp. PRwf-1]
gi|172048490|sp|A5WCL3.1|RS4_PSYWF RecName: Full=30S ribosomal protein S4
gi|148571345|gb|ABQ93404.1| SSU ribosomal protein S4P [Psychrobacter sp. PRwf-1]
Length = 213
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 140/207 (67%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K R PGQHG ++ S+Y Q REK
Sbjct: 1 MARYIGPKLKLSRREGTDLQLKSGVKPYDVKTKKAGRVPGQHGNTR-NKASEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKRMYG+LE+QF Y+ E AR +G TGE +L++LE R DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVKRMYGVLERQFANYYKESARARGATGEHLLQMLERRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
SHRA ++ K VNI S +++ GD+I++ EKAK+Q RI N++EL+ W+
Sbjct: 120 SHRAVMIKKAGRDEFVRVNIPSIQVQDGDVIAIHEKAKEQLRIKNAIELATQRGIPEWLE 179
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD KM+G FK P+R + +I + L
Sbjct: 180 VDHSKMQGTFKQAPDRIDLPAEITESL 206
>gi|333368248|ref|ZP_08460458.1| 30S ribosomal protein S4 [Psychrobacter sp. 1501(2011)]
gi|332977638|gb|EGK14406.1| 30S ribosomal protein S4 [Psychrobacter sp. 1501(2011)]
Length = 213
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 140/207 (67%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-PGQHGRISGSRTSDYGYQFREK 59
MARYIGPK KL RREG DL LKS + D K K R PGQHG ++ S+Y Q REK
Sbjct: 1 MARYIGPKLKLSRREGTDLQLKSGVKPYDVKTKKAGRVPGQHGNTR-NKASEYSLQLREK 59
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QKVKRMYG+LE+QF Y+ E AR +G TGE +L++LE R DNVVYRMGF STR+EARQL+
Sbjct: 60 QKVKRMYGVLERQFANYYKESARARGATGEHLLQMLERRLDNVVYRMGFGSTRAEARQLV 119
Query: 120 SHRAFLVNKKI------VNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
SHRA ++ K VNI S +++ GD+I++ EKAK+Q RI N++EL+ W+
Sbjct: 120 SHRAIMLKKAGRDEFVRVNIPSIQVQDGDVIAIHEKAKEQLRIKNAIELATQRGIPEWLD 179
Query: 174 VDAKKMEGVFKSEPNRSEFANDINDLL 200
VD KM+G FK P+R + +I + L
Sbjct: 180 VDHSKMQGTFKQAPDRIDLPAEITESL 206
>gi|297537555|ref|YP_003673324.1| 30S ribosomal protein S4 [Methylotenera versatilis 301]
gi|297256902|gb|ADI28747.1| ribosomal protein S4 [Methylotenera versatilis 301]
Length = 209
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK A + KC ++ R PGQHG+ R SDYG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-AEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG+LE QFR Y+ E R KG TGE +L+LLE R DNV YRMG +R+EARQ
Sbjct: 60 EKQKVRRIYGVLEAQFRSYYAEADRQKGITGENLLQLLECRLDNVTYRMGLGGSRTEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H + LVN + VNI SY++K GD++SV E +K Q RI +LE +E +WI VD K
Sbjct: 120 IVRHNSILVNGRRVNIPSYQVKAGDVVSVAESSKTQLRIKGALEAAEQRGFPAWIEVDVK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++G FK++P R E IN+ L
Sbjct: 180 ALKGTFKAKPQRDELPPTINESL 202
>gi|385330144|ref|YP_005884095.1| 30S ribosomal protein S4 [Marinobacter adhaerens HP15]
gi|311693294|gb|ADP96167.1| 30S ribosomal protein S4 [Marinobacter adhaerens HP15]
Length = 167
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 122/160 (76%), Gaps = 1/160 (0%)
Query: 41 HGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFD 100
HG G R S+YG Q REKQKV+R+YG+LEKQFR Y+ E AR KG TGE +L+LLE R D
Sbjct: 2 HGARRG-RLSEYGVQLREKQKVRRIYGVLEKQFRNYYKEAARGKGATGENLLQLLEGRLD 60
Query: 101 NVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSL 160
NVVYRMGF STR+EARQL+SH+A LVN K VNI SY+++PGD++SVREKAK Q R+ +L
Sbjct: 61 NVVYRMGFGSTRAEARQLVSHKAILVNDKTVNIPSYQVRPGDVVSVREKAKNQLRVRGAL 120
Query: 161 ELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
+LS P SW+ VDA KM GV+KS P R+E DIN+ L
Sbjct: 121 DLSASRAPVSWVEVDANKMSGVYKSVPERTELPADINENL 160
>gi|253995743|ref|YP_003047807.1| 30S ribosomal protein S4 [Methylotenera mobilis JLW8]
gi|253982422|gb|ACT47280.1| ribosomal protein S4 [Methylotenera mobilis JLW8]
Length = 209
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 134/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK A + KC ++ R PGQHG+ R SDYG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-AEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG+LE QFR Y+ E R KG TGE +L+LLE R DNV YRMG +R+EARQ
Sbjct: 60 EKQKVRRIYGVLEGQFRSYYAEADRQKGITGENLLQLLECRLDNVTYRMGLGGSRTEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H + LVN K VNI SY++K GD+ISV E +K Q RI +LE +E W+ VD K
Sbjct: 120 IVRHNSILVNGKRVNIPSYQVKAGDVISVAEASKTQLRIKGALEAAEQRGFPEWLDVDVK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++G FK++P R E IN+ L
Sbjct: 180 ALKGTFKAKPQRDELPPTINESL 202
>gi|407716949|ref|YP_006838229.1| 30S ribosomal protein S4 [Cycloclasticus sp. P1]
gi|407257285|gb|AFT67726.1| Ribosomal protein S4 [Cycloclasticus sp. P1]
Length = 208
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 140/203 (68%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MA+Y K +LCRREG LFLK + +KC ++ R PGQHG+ +R SDY Q R
Sbjct: 1 MAKYTDSKCRLCRREGEKLFLK-GEKCYTAKCAMEKRAYPPGQHGQ-RRTRLSDYALQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LEKQFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF+++RSEARQ
Sbjct: 59 EKQKLRRIYGVLEKQFRGYYAEAARIKGSTGENLLQLLECRLDNVVYRMGFAASRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H +VN VNI S+++K D+I V E +K Q RI ++LE E WI +D K
Sbjct: 119 LVRHNGIVVNGVRVNIPSFQVKSEDVIEVMESSKNQNRIKSALEFVEQRGVPEWIELDIK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
KM+G+FK +P RS+ +IN+ L
Sbjct: 179 KMQGIFKVKPERSDLPAEINEHL 201
>gi|254468445|ref|ZP_05081851.1| ribosomal protein S4 [beta proteobacterium KB13]
gi|207087255|gb|EDZ64538.1| ribosomal protein S4 [beta proteobacterium KB13]
Length = 209
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK K CRREG LFLK + KC ++ R PGQHG+ G R SDYG Q R
Sbjct: 1 MARNLDPKCKQCRREGEKLFLK-GEKCFTDKCGIEKRSYPPGQHGQRRGGRLSDYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++++YGILEKQFR Y+ E RLKG TGE +L+LLESR DNVVYRMG +RSE+RQ
Sbjct: 60 EKQKLRKIYGILEKQFRSYYAEADRLKGVTGENLLQLLESRLDNVVYRMGIGVSRSESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H + VN VNI SY++KPGD ++V E +K Q RI + E ++ W+ VD K
Sbjct: 120 LVRHNSITVNGNRVNIPSYQVKPGDQVAVAEASKNQLRIKAATEAADERGFPEWVEVDVK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G FK++P R + IN+ L
Sbjct: 180 KLSGTFKNKPQRDDLPPTINESL 202
>gi|118595311|ref|ZP_01552658.1| 30S ribosomal protein S4 [Methylophilales bacterium HTCC2181]
gi|118441089|gb|EAV47716.1| 30S ribosomal protein S4 [Methylophilales bacterium HTCC2181]
Length = 209
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 138/203 (67%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SR SDYG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIEKRNYPPGQHGQRRASRLSDYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++RMYG+LEKQFR Y+ E R KG TGE +L+LLESR DNVVY+MG ++R+E+RQ
Sbjct: 60 EKQKLRRMYGVLEKQFRGYYAEADRRKGITGENLLQLLESRLDNVVYKMGLGASRTESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H A LVN K VNI S+++ PGD +SV E AK Q RI ++E + W+ VD+K
Sbjct: 120 IVKHNAILVNGKRVNIPSFQVSPGDEVSVVESAKSQLRIKGAIEAAVERGFPEWLEVDSK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+GVFK++P R + + IN+ L
Sbjct: 180 AFKGVFKNKPQRDDLPSTINESL 202
>gi|119899681|ref|YP_934894.1| 30S ribosomal protein S4 [Azoarcus sp. BH72]
gi|152060933|sp|A1KB02.1|RS4_AZOSB RecName: Full=30S ribosomal protein S4
gi|119672094|emb|CAL96008.1| 30S ribosomal protein S4 [Azoarcus sp. BH72]
Length = 209
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 136/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG R S YG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIERRAYAPGQHGQRSGQRLSGYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE+QFR+ + E R +G+TGE +L+LLE R D+V YRMGF ++R+EARQ
Sbjct: 60 EKQKIRRLYGVLERQFRKVYAEADRRRGQTGENLLQLLEGRLDSVAYRMGFGASRAEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN K VNI SY ++PGD+I + E K R+ +LE +E WI VDAK
Sbjct: 120 VVRHNGVLVNGKRVNIPSYTVRPGDVIELAEGTKGHLRVKAALEAAESRGFPEWIEVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+GVFK+ P RSE + IN+ L
Sbjct: 180 AGKGVFKAYPQRSELSATINEGL 202
>gi|407009513|gb|EKE24635.1| hypothetical protein ACD_6C00071G0001, partial [uncultured
bacterium]
Length = 203
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 137/203 (67%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ +R S YG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCSVERRAYPPGQHGQKMNTRISGYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGILE+QFR Y+ E R++G TGE +L+LLE R DNV YRMGF ++R+EARQ
Sbjct: 60 EKQKLRRIYGILERQFRGYYKEADRVRGITGENLLQLLECRLDNVAYRMGFGASRTEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN + VNI SY++KPGD++ V E+AK R+ +L +E WI VD K
Sbjct: 120 VVRHNGILVNGRRVNIPSYQVKPGDVVEVTERAKNHLRVKGALAAAEQRGFPEWIEVDTK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++G +K++P RSE + IN+ L
Sbjct: 180 ALKGTYKAKPQRSELPSTINEHL 202
>gi|32423695|gb|AAP81238.1| ribosomal protein S4 [Candidatus Portiera aleyrodidarum]
Length = 203
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 145/200 (72%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS S++ KCK+D PGQ+ + +R ++YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGMVSIEEKCKIDKIPGQNKK-HRTRITEYGKQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQF+ Y+ + A+ KG GE +L+ LESR DN+VYRMGFS TR+EARQL++
Sbjct: 60 KVRRIYGVLEKQFKNYYKKAAKNKGAKGEYLLQSLESRLDNIVYRMGFSVTRAEARQLVN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ VN +IVNI+SYK+ GD IS+R K+ QTRI N+L + + W+ VD KKME
Sbjct: 120 HKTIKVNGRIVNISSYKVTVGDCISIRAKSMNQTRIKNALAI---ANKVKWVHVDEKKME 176
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K P S+ + DIN+ L
Sbjct: 177 GIVKYLP--SKISTDINEKL 194
>gi|387131348|ref|YP_006294238.1| 30S ribosomal protein S4 [Methylophaga sp. JAM7]
gi|386272637|gb|AFJ03551.1| SSU ribosomal protein S4p (S9e) [Methylophaga sp. JAM7]
Length = 206
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/200 (53%), Positives = 142/200 (71%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M +Y GP KL RREG DLFLK+ L+SKCK++ +PGQHG G R SDY Q R KQ
Sbjct: 1 MGKYRGPTCKLSRREGTDLFLKARGNPLESKCKIEQKPGQHGARRG-RDSDYATQLRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+++RMYG+LEKQFR Y+ + KG TG +L LLE R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 RIRRMYGVLEKQFRNYYKLADQKKGATGINLLNLLEQRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ASY++K GD++ +REKAKKQ RI N++ ++E WI V+ K +
Sbjct: 120 HKAVLVNNKVVNVASYQVKEGDVVEIREKAKKQDRIVNAMSVAEQLGFPEWIEVNTKTLS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P R E ++++ L
Sbjct: 180 GIFKRAPERDELPAELSENL 199
>gi|417854180|ref|ZP_12499502.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|338218364|gb|EGP04137.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida
str. Anand1_goat]
Length = 158
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 123/153 (80%), Gaps = 1/153 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R+++SKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRIYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQ 153
H+A +VN ++VNI S+++ D+++VREK+KKQ
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQ 152
>gi|402575096|ref|YP_006607988.1| 30S ribosomal protein S4 [Candidatus Portiera aleyrodidarum
BT-B-HRs]
gi|407453112|ref|YP_006732431.1| 30S ribosomal protein S4 [Candidatus Portiera aleyrodidarum
BT-QVLC]
gi|407681446|ref|YP_006796622.1| 30S ribosomal protein S4 [Candidatus Portiera aleyrodidarum
BT-QVLC]
gi|407681728|ref|YP_006796903.1| SSU ribosomal protein S4p (S9e) [Candidatus Portiera aleyrodidarum
BT-B-HRs]
gi|401871900|gb|AFQ24068.1| SSU ribosomal protein S4P [Candidatus Portiera aleyrodidarum
BT-B-HRs]
gi|405779829|gb|AFS18832.1| 30S ribosomal protein S4 [Candidatus Portiera aleyrodidarum
BT-QVLC]
gi|407243057|gb|AFT80458.1| SSU ribosomal protein S4p (S9e) [Candidatus Portiera aleyrodidarum
BT-QVLC]
gi|407243339|gb|AFT80739.1| SSU ribosomal protein S4p (S9e) [Candidatus Portiera aleyrodidarum
BT-B-HRs]
Length = 203
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 145/200 (72%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS S++ KCK D PGQ+ + +R ++YG Q REKQ
Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGMVSIEEKCKFDKIPGQNKK-HRTRITEYGKQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQF+ Y+ + A+ KG GE +L+ LE+R DN+VYRMGFS TR+EARQL++
Sbjct: 60 KVRRIYGVLEKQFKNYYKKAAKNKGAKGEYLLQSLEARLDNIVYRMGFSVTRAEARQLVN 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN +IVNI+SYK+ GD IS+R K+ QTRI N+L + + W+ VD KKME
Sbjct: 120 HKSIKVNGRIVNISSYKVTVGDCISIRAKSMNQTRIKNALAI---ANKVKWVHVDEKKME 176
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K P S+ + DIN+ L
Sbjct: 177 GIVKYLP--SKISTDINEKL 194
>gi|416058069|ref|ZP_11580413.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
gi|348000078|gb|EGY40877.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
Length = 158
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 122/153 (79%), Gaps = 1/153 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK+D PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTAPGQHG-ARKPRLSDYGSQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYGILE+QFR Y+ E RLKG TGE +L LLE R DNVVYRMGF++TR+EARQL+S
Sbjct: 60 KVRRMYGILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQ 153
H+A +VN ++VNI S+++ D+++VREK+K +
Sbjct: 120 HKAIVVNGRVVNIPSFQVSVDDLVAVREKSKNK 152
>gi|325981829|ref|YP_004294231.1| 30S ribosomal protein S4 [Nitrosomonas sp. AL212]
gi|325531348|gb|ADZ26069.1| ribosomal protein S4 [Nitrosomonas sp. AL212]
Length = 208
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 138/203 (67%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MA+ + PK K CRREG LFLK + KC ++ R PGQHG+ G RTSDYG Q R
Sbjct: 1 MAKNLEPKCKQCRREGEKLFLKGGK-CFTDKCAIERRNYPPGQHGQKKG-RTSDYGGQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGILEKQFR + + +G TG+ +L+LLE R DNV + MGF ++RSEARQ
Sbjct: 59 EKQKIRRIYGILEKQFRNIYKVADKQRGITGDNLLQLLEGRLDNVAFHMGFGASRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H L+N VNI SY++K GD + V EKAK+Q RI N+LE++ + +WI VD K
Sbjct: 119 IVRHNGILINGSRVNIPSYRVKAGDTVEVAEKAKEQLRIKNALEMANNRNFATWIEVDTK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G+FK++P RS+ IN+ L
Sbjct: 179 AMKGIFKTKPERSDLPATINESL 201
>gi|117924179|ref|YP_864796.1| 30S ribosomal protein S4 [Magnetococcus marinus MC-1]
gi|152060958|sp|A0L5Z7.1|RS4_MAGSM RecName: Full=30S ribosomal protein S4
gi|117607935|gb|ABK43390.1| SSU ribosomal protein S4P [Magnetococcus marinus MC-1]
Length = 208
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 138/203 (67%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY+G K +LCRRE LFLK + KC ++ R PGQHG+ + SDYG R
Sbjct: 1 MARYLGSKCRLCRREATKLFLK-GEKCYSDKCAMERRNYVPGQHGQ-RRRKVSDYGVHLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR YG+LE QFR + + R+KG TGE +L+LLE R DNVVYR+G +++R+EARQ
Sbjct: 59 EKQKVKRSYGLLEAQFRTLYKKAERMKGVTGENLLQLLERRLDNVVYRLGLAASRTEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
+ISH+ LVN K+VN+ SY KPGD+++VREK++ Q RI +L + SW+ VDA+
Sbjct: 119 IISHKTLLVNGKMVNVPSYLCKPGDVVAVREKSRGQLRIKGALASAMQRGLPSWVEVDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G F+S P RS+ + N+ L
Sbjct: 179 KLVGTFRSIPERSDLPAEFNENL 201
>gi|345862675|ref|ZP_08814889.1| 30S ribosomal protein S4 [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345126017|gb|EGW55883.1| 30S ribosomal protein S4 [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 182
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 126/175 (72%), Gaps = 1/175 (0%)
Query: 26 RSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKG 85
RSLDSKC ++ PGQ G R SDYG Q REKQKV+R+YG++E QFR Y+ A+ KG
Sbjct: 2 RSLDSKCNMEKVPGQSGD-RRRRISDYGLQLREKQKVRRIYGVMENQFRNYYKAAAQAKG 60
Query: 86 KTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIIS 145
TGE +L+ LE+R DNVVYRMGF STR+EARQL+SH+A VN +VN+ASYKIK D +S
Sbjct: 61 ATGENLLQALETRLDNVVYRMGFGSTRAEARQLVSHKAIEVNGSVVNVASYKIKAEDEVS 120
Query: 146 VREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
+REKAKKQ RI +L L+E W+ VD K M+GVFK P+R++ +IN+ L
Sbjct: 121 IREKAKKQVRIQGALSLAEQYGFVDWVEVDPKAMKGVFKRVPDRADLPAEINEQL 175
>gi|56477618|ref|YP_159207.1| 30S ribosomal protein S4 [Aromatoleum aromaticum EbN1]
gi|81357334|sp|Q5P308.1|RS4_AZOSE RecName: Full=30S ribosomal protein S4
gi|56313661|emb|CAI08306.1| 30S Ribosomal protein S4 [Aromatoleum aromaticum EbN1]
Length = 209
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK A + KC ++ R PGQHG+ SG R S YG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-AEKCFTDKCAIERRAYAPGQHGQRSGQRMSGYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFR+ + E R +G+TGE +L+LLE R D+VVYRMGF +R+E+RQ
Sbjct: 60 EKQKIRRLYGVLEAQFRKVYAEAERRRGQTGENLLQLLEGRLDSVVYRMGFGGSRAESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H LVN K VNI SY ++PGD++ + E ++ Q R+ +LE + W+ VDAK
Sbjct: 120 LVRHNGILVNGKRVNIPSYVVRPGDVVELTEGSRGQLRVKAALEAAASRGFPEWLDVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G FK+ P R+E IN+ L
Sbjct: 180 AGKGTFKAYPQRAELPPTINEGL 202
>gi|358638962|dbj|BAL26259.1| 30S ribosomal protein S4 [Azoarcus sp. KH32C]
Length = 209
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 136/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG R S YG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGDK-CFTDKCAIERRAYAPGQHGQRSGQRLSGYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFR+ + E R +G+TGE +L+LLE R D+VVYRMGF ++R+E+RQ
Sbjct: 60 EKQKIRRLYGVLEAQFRKVYAEADRRRGQTGENLLQLLEGRLDSVVYRMGFGASRAESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H LVN K VNI S+ ++PGD++ + E A+ Q R+ +LE + WI VDAK
Sbjct: 120 LVRHNGILVNGKRVNIPSFVVRPGDVVELTEGARGQLRVKAALEAAASRGFPEWIEVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+GVFK+ P R+E IN+ L
Sbjct: 180 AGKGVFKAYPQRAELPPTINEGL 202
>gi|257095016|ref|YP_003168657.1| 30S ribosomal protein S4 [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047540|gb|ACV36728.1| ribosomal protein S4 [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 209
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 138/203 (67%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG R SDYG R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIERRSYAPGQHGQKSGQRLSDYGVHLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFR+ + E R +G TGE++L+LLESR D+V YRMGF+++RSE+RQ
Sbjct: 60 EKQKIRRIYGVLEGQFRKVYKEADRRRGVTGEVLLQLLESRLDSVAYRMGFAASRSESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN + VNI SY+++PGD++ V EKAK R+ +L +E W+ VDAK
Sbjct: 120 VVRHNGVLVNGRRVNIPSYQVRPGDVVEVCEKAKAHLRVKAALAAAEARGFPEWVEVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+GV+K+ P RSE IN+ L
Sbjct: 180 AAKGVYKAHPERSELPPTINESL 202
>gi|82701924|ref|YP_411490.1| 30S ribosomal protein S4 [Nitrosospira multiformis ATCC 25196]
gi|90101698|sp|Q2YAX3.1|RS4_NITMU RecName: Full=30S ribosomal protein S4
gi|82409989|gb|ABB74098.1| SSU ribosomal protein S4P [Nitrosospira multiformis ATCC 25196]
Length = 208
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 136/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG R SDYG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIERRNYAPGQHGQKSG-RLSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE+QFR + R +G TGE +L+LLE R D V YRMGF ++RSEARQ
Sbjct: 59 EKQKLRRIYGVLERQFRNGYELAERQRGVTGENLLQLLECRLDTVSYRMGFGASRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN + +NI SY++KPGD+I V EKAK RI S+E +E W+ VD K
Sbjct: 119 IVRHNGILVNGRRINIPSYQVKPGDVIEVAEKAKNHLRIKASVEAAEQRHFPEWLEVDTK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G FK++P RS+ + IN+ L
Sbjct: 179 AMKGTFKNKPERSDLPSSINESL 201
>gi|334131465|ref|ZP_08505227.1| 30S ribosomal subunit protein S4 [Methyloversatilis universalis
FAM5]
gi|333442938|gb|EGK70903.1| 30S ribosomal subunit protein S4 [Methyloversatilis universalis
FAM5]
Length = 209
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + K + CRREG LFLK + KC ++ R PGQHG+ SG R S +G Q R
Sbjct: 1 MARNLDAKCRQCRREGEKLFLK-GEKCFTDKCAIERRSYAPGQHGQKSGQRLSGFGQQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE+QFRR + E R KG+TGE +L+LLESR D V YRMGF ++R+E+RQ
Sbjct: 60 EKQKIRRIYGVLERQFRRVYAEAERRKGQTGENMLQLLESRLDTVAYRMGFGASRAESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN K VNI SY+++PGD++ + E+AK R +LE W+ VDAK
Sbjct: 120 VVRHNGILVNGKRVNIPSYEVRPGDVVELTERAKGHLRSKGALEAQASRGFPEWLDVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
GVFKS P RS+ ++ IN+ L
Sbjct: 180 AGRGVFKSMPARSDLSSTINESL 202
>gi|407893947|ref|ZP_11152977.1| 30S ribosomal protein S4 [Diplorickettsia massiliensis 20B]
Length = 196
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 136/200 (68%), Gaps = 11/200 (5%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RR G DL LKS R+++SKCKL PG HG G R SDYG R+KQ
Sbjct: 1 MARYRGPTCKLARRLGTDLQLKSGIRAINSKCKLVTPPGMHGAKRG-RLSDYGVMLRQKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
++R YG+LEKQFR Y+ + ++ KG TGE +LKLLE+R DN+VYR+ ++TR+EARQL+S
Sbjct: 60 LIRRTYGVLEKQFRNYYAKASKAKGITGENLLKLLETRLDNIVYRL--AATRAEARQLVS 117
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN +IVNI SY ++ GD+I V EK K QTR+ +L +WI +D KM+
Sbjct: 118 HRAIKVNDQIVNIPSYAVEVGDVIEVVEKCKSQTRVQAALP--------AWIDIDTTKMQ 169
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K P RSE ++ N+ L
Sbjct: 170 GIIKLIPERSELPSEFNESL 189
>gi|237653971|ref|YP_002890285.1| 30S ribosomal protein S4 [Thauera sp. MZ1T]
gi|237625218|gb|ACR01908.1| ribosomal protein S4 [Thauera sp. MZ1T]
Length = 209
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG R S YG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCSIERRAYAPGQHGQRSGQRLSGYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE+QFR+ + E R +G+TGE +L+LLE R D V YRMGF ++R+EARQ
Sbjct: 60 EKQKIRRIYGVLERQFRKVYAEADRRRGQTGENLLQLLEGRLDAVAYRMGFGASRAEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN K VNI SY ++PGD++ + E+A+ R+ +LE +E W+ VDAK
Sbjct: 120 VVRHNGVLVNGKRVNIPSYVVRPGDVVELTERARGHLRVKAALEAAESRGFPEWLEVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G FK+ P RSE IN+ L
Sbjct: 180 AGKGTFKAYPVRSELPPTINEGL 202
>gi|225076419|ref|ZP_03719618.1| hypothetical protein NEIFLAOT_01464 [Neisseria flavescens
NRL30031/H210]
gi|224952267|gb|EEG33476.1| hypothetical protein NEIFLAOT_01464 [Neisseria flavescens
NRL30031/H210]
Length = 173
Score = 202 bits (515), Expect = 3e-49, Method: Composition-based stats.
Identities = 102/167 (61%), Positives = 132/167 (79%), Gaps = 1/167 (0%)
Query: 34 LDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILK 93
+D PGQHG R SDYG Q REKQK++R+YG+LE+QFRRYF E AR KG TGE++L+
Sbjct: 1 MDSAPGQHG-AKKPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEAARRKGSTGELLLQ 59
Query: 94 LLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQ 153
LLESR DNVVYRMGF STR+EARQL+SH+A +VN ++VNI S+++K GD+++VREKAKKQ
Sbjct: 60 LLESRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVAVREKAKKQ 119
Query: 154 TRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
RI +L L+ SW++VDA K+EGVFK+ P+RSE + DIN+ L
Sbjct: 120 VRIQEALSLATQIGLPSWVSVDADKLEGVFKNMPDRSELSGDINEQL 166
>gi|329907624|ref|ZP_08274694.1| DNA-directed RNA polymerase alpha subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327546929|gb|EGF31838.1| DNA-directed RNA polymerase alpha subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 325
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/129 (71%), Positives = 114/129 (88%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRII+V+TLG+ HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NSLLKPRIIEVETLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSSL+GVQED++D++LNLKGV+ KL+NRD L LKK G+ VLASDI+L D+EL+N
Sbjct: 63 HEYSSLDGVQEDVVDMLLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVELIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 123 PDHVIAHLT 131
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/99 (84%), Positives = 87/99 (87%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSARVLVDQLNVFAALE T E S VDPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARVLVDQLNVFAALEGTEAAAEAPSRAPSVDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRSENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|385809522|ref|YP_005845918.1| 30S ribosomal protein S4 [Ignavibacterium album JCM 16511]
gi|383801570|gb|AFH48650.1| Ribosomal protein S4 [Ignavibacterium album JCM 16511]
Length = 208
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 138/203 (67%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY KLCRRE LFLK ++ KC ++ R PGQHG ++ S+YG Q R
Sbjct: 1 MARYTDSVCKLCRRERQKLFLK-GQKCFTDKCPIEQRNYPPGQHGVSRRAKISEYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+KRMYG+LE QFR YF + + KGKTGE ++KLLE R DNVVYR+GF+S+R +ARQ
Sbjct: 60 EKQKIKRMYGLLETQFRNYFEKAIKQKGKTGENLVKLLERRLDNVVYRIGFASSRKQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
LI HR FLVN ++V+I SY + PGDII V+EK+KK I NSL+ + +T ++WITVD
Sbjct: 120 LIKHRHFLVNNQLVDIPSYLLNPGDIIQVKEKSKKLDAIHNSLKRVKDNT-YNWITVDKA 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G F P R++ + N+ L
Sbjct: 179 TLSGTFVQVPERADIPLNANEQL 201
>gi|340785622|ref|YP_004751087.1| DNA-directed RNA polymerase subunit alpha [Collimonas fungivorans
Ter331]
gi|340550889|gb|AEK60264.1| DNA-directed RNA polymerase alpha subunit [Collimonas fungivorans
Ter331]
Length = 325
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/129 (72%), Positives = 113/129 (87%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRII+V+ LG+ HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSSL+GVQED++DI+LNLKGV+ KL+NRD L LKK G+ VLASDI+L D+ELVN
Sbjct: 63 HEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVELVN 122
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 123 PDHVIAHLT 131
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/99 (84%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSARVLVDQLNVFAALE T E S +VDPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARVLVDQLNVFAALEGTEAAAEAPSRAPQVDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRSENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|71905986|ref|YP_283573.1| 30S ribosomal protein S4 [Dechloromonas aromatica RCB]
gi|90101686|sp|Q47J78.1|RS4_DECAR RecName: Full=30S ribosomal protein S4
gi|71845607|gb|AAZ45103.1| SSU ribosomal protein S4P [Dechloromonas aromatica RCB]
Length = 209
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 136/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG+R SDYG R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIERRSYAPGQHGQKSGARLSDYGVHLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQK++R+YG+LE QFR+ F E R KG+TGE +L+LLE+R D+V YRMGF ++RSE+RQ
Sbjct: 60 AKQKIRRVYGVLEGQFRKTFAEADRRKGQTGENLLQLLEARLDSVAYRMGFGASRSESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN K VNI S+ +KPGD++ + ++A+ R +LE +E WI+VD K
Sbjct: 120 VVRHNGILVNGKRVNIPSFIVKPGDVVQLTDRARASLRCKAALEAAESRGFPEWISVDVK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ +G FK+ P RSE +N+ L
Sbjct: 180 EGKGTFKAMPQRSELPATLNEGL 202
>gi|406999933|gb|EKE17402.1| hypothetical protein ACD_10C00468G0001 [uncultured bacterium]
Length = 209
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 137/203 (67%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG+R SDYG R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIERRSYAPGQHGQKSGARLSDYGVHLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQK++R+YG+LE QFRR F E R KG+TGE +L+LLE+R D+V YRMGF+++RSE+RQ
Sbjct: 60 AKQKIRRVYGVLEGQFRRVFAEADRRKGQTGENLLQLLEARLDSVAYRMGFAASRSESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN K VNI SY +K GD++ + ++++ R +LE +E W+ VDAK
Sbjct: 120 IVRHNGVLVNGKRVNIPSYLVKVGDVVQLTDRSRASLRCKAALEAAESRGFPEWVAVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ +G FK+ P RSE + +N+ L
Sbjct: 180 EGKGTFKAMPQRSELPSTLNEGL 202
>gi|357406651|ref|YP_004918575.1| RNA polymerase subunit alpha [Methylomicrobium alcaliphilum 20Z]
gi|351719316|emb|CCE24992.1| RNA polymerase, alpha subunit [Methylomicrobium alcaliphilum 20Z]
Length = 336
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 174/313 (55%), Gaps = 78/313 (24%)
Query: 192 FANDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVI 251
N I+ LL+PR+++V + +NH+++++EP ERG+G++LGNALRRVLLSS+ GCA T++
Sbjct: 1 MQNSISGLLRPRLVEVVSKSANHSRIVIEPLERGFGHSLGNALRRVLLSSIPGCAVTDIE 60
Query: 252 ISGALHEYSSLEGVQEDII-----------------DIILNLK----GVI---------- 280
I G LHEY+++EGVQED+I D++L L GV+
Sbjct: 61 IEGVLHEYTAIEGVQEDVIDIILNLKKLAVLLHSKDDVVLTLSKSGVGVVTAADIQLPHD 120
Query: 281 LKLYNRDYAILNLKK---------------------------------------FGKCVV 301
+++ N D I NL + + +
Sbjct: 121 VEIVNPDLVIANLTQDKQFNMKIRVRRGRGYEPVSARKQQTDNPIIGSLQVDASYSPIIK 180
Query: 302 LASDIELLSDIELVNPNHIIAHLS-----DNEEAIRQSARVLVDQLNVFAALENT--PV- 353
+A +E + N + +I L D EE I+ +A +L DQL+VF E PV
Sbjct: 181 VAYQVESTRVEQRTNLDKLIVELETNGTVDPEETIKLAATILHDQLSVFVDFEKVAPPVD 240
Query: 354 KKELDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRK 413
+KE +DP+LLRPVDDLELTVRSANCLKAENI IGDLIQR+E ELL+TPNLG+K
Sbjct: 241 EKEAPQEGPDIDPVLLRPVDDLELTVRSANCLKAENIFYIGDLIQRTEVELLKTPNLGKK 300
Query: 414 SLNEIKEILASRG 426
SL EIK++LA +G
Sbjct: 301 SLTEIKDVLALKG 313
>gi|372487028|ref|YP_005026593.1| 30S ribosomal protein S4 [Dechlorosoma suillum PS]
gi|359353581|gb|AEV24752.1| ribosomal protein S4, bacterial/organelle type [Dechlorosoma
suillum PS]
Length = 209
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 136/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + D KC ++ R PGQHG+ SG R SDYG R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCYTD-KCSVERRAYAPGQHGQKSGQRLSDYGVHLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFR + E R KG TGE +L+LLESR D+V YRMGF ++RSE+RQ
Sbjct: 60 EKQKIRRIYGVLEGQFRSVYKEADRRKGVTGENLLQLLESRLDSVAYRMGFGASRSESRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN K VNI SY+++PGD++ + E+++ R+ +L +E W+ VDAK
Sbjct: 120 IVRHNGVLVNGKRVNIPSYQVRPGDVVELTERSRGSLRVKAALAAAESRGFPEWLDVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G FK+ P RSE + IN+ L
Sbjct: 180 NGKGTFKAAPIRSELPSTINESL 202
>gi|427399567|ref|ZP_18890805.1| DNA-directed RNA polymerase subunit alpha [Massilia timonae CCUG
45783]
gi|425721329|gb|EKU84242.1| DNA-directed RNA polymerase subunit alpha [Massilia timonae CCUG
45783]
Length = 325
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/129 (70%), Positives = 113/129 (87%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRIIDV+ LG+ HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NSLLKPRIIDVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSSL+GVQED++D++LNLKGV+ K++NRD L LKK G+ VLASDI+L D+EL+N
Sbjct: 63 HEYSSLDGVQEDVVDLLLNLKGVVFKVHNRDSVTLTLKKEGEGAVLASDIDLPHDVELIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 123 PDHVIAHLT 131
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/99 (84%), Positives = 87/99 (87%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSARVLVDQLNVFAALE T E S VDPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARVLVDQLNVFAALEGTEAAAEAPSRAPLVDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRSENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|399017015|ref|ZP_10719216.1| ribosomal protein L17 [Herbaspirillum sp. CF444]
gi|398104345|gb|EJL94487.1| ribosomal protein L17 [Herbaspirillum sp. CF444]
Length = 129
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 107/118 (90%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRVVEPILTL K +TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAFS LRDR+I KLFSELGPRY NGGY+RILKMGFRVGDNAPMAF+EL+++
Sbjct: 61 ANKRLAFSRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRVGDNAPMAFVELVDR 118
>gi|445494448|ref|ZP_21461492.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp.
HH01]
gi|444790609|gb|ELX12156.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp.
HH01]
Length = 325
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 113/129 (87%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRIIDV+ LG+ HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NSLLKPRIIDVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSSL+GVQED++D++LNLKGV+ K++NRD L LKK G+ +LASDI+L D+EL+N
Sbjct: 63 HEYSSLDGVQEDVVDLLLNLKGVVFKVHNRDSVTLTLKKEGEGAILASDIDLPHDVELIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 123 PDHVIAHLT 131
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/99 (84%), Positives = 87/99 (87%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSARVLVDQLNVFAALE T E S VDPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARVLVDQLNVFAALEGTEAAAEAPSRAPLVDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRSENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|284799892|ref|ZP_05985156.2| ribosomal protein S4 [Neisseria subflava NJ9703]
gi|284796551|gb|EFC51898.1| ribosomal protein S4 [Neisseria subflava NJ9703]
Length = 173
Score = 200 bits (509), Expect = 2e-48, Method: Composition-based stats.
Identities = 101/167 (60%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Query: 34 LDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILK 93
+D PGQHG R SDYG Q REKQK++R+YG+LE+QFRRYF E R KG TGE++L+
Sbjct: 1 MDSAPGQHG-AKKPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEADRRKGSTGELLLQ 59
Query: 94 LLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQ 153
LLESR DNVVYRMGF STR+EARQL+SH+A +VN ++VNI S+++K GD+++VREKAKKQ
Sbjct: 60 LLESRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVAVREKAKKQ 119
Query: 154 TRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
RI +L L+ SW++VDA K+EGVFK+ P+RSE + DIN+ L
Sbjct: 120 VRIQEALSLATQIGLPSWVSVDADKLEGVFKNMPDRSELSGDINEQL 166
>gi|445494449|ref|ZP_21461493.1| 50S ribosomal protein L17 [Janthinobacterium sp. HH01]
gi|444790610|gb|ELX12157.1| 50S ribosomal protein L17 [Janthinobacterium sp. HH01]
Length = 132
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 108/118 (91%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRVVEPILTL K +TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAFS LRDR++ +KLF+ELGPRY NGGY+RILKMGFRVGDNAPMA++EL+++
Sbjct: 61 ANKRLAFSRLRDREMVLKLFAELGPRYANRNGGYLRILKMGFRVGDNAPMAYVELMDR 118
>gi|420382505|ref|ZP_14881940.1| ribosomal protein S4 [Shigella dysenteriae 225-75]
gi|391298652|gb|EIQ56652.1| ribosomal protein S4 [Shigella dysenteriae 225-75]
Length = 154
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 117/146 (80%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E
Sbjct: 2 QLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
ARQL+SH+A +VN +IVNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ V
Sbjct: 62 ARQLVSHKAIMVNGRIVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
DA KMEG FK +P RS+ + DIN+ L
Sbjct: 122 DAGKMEGTFKRKPERSDLSADINEHL 147
>gi|395760728|ref|ZP_10441397.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium
lividum PAMC 25724]
Length = 325
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 112/129 (86%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRIIDV+ LG HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 NSLLKPRIIDVEALGPGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSSL+GVQED++D++LNLKGV+ K++NRD L LKK G+ +LASDI+L D+EL+N
Sbjct: 63 HEYSSLDGVQEDVVDLLLNLKGVVFKVHNRDSVTLTLKKEGEGAILASDIDLPHDVELIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 123 PDHVIAHLT 131
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/99 (84%), Positives = 87/99 (87%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSARVLVDQLNVFAALE T E S VDPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARVLVDQLNVFAALEGTEAAAEAPSRAPLVDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRSENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|398833114|ref|ZP_10591254.1| ribosomal protein L17 [Herbaspirillum sp. YR522]
gi|398222100|gb|EJN08488.1| ribosomal protein L17 [Herbaspirillum sp. YR522]
Length = 131
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/118 (81%), Positives = 107/118 (90%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRVVEPILTL K +TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAFS LRDR+I +KLF+ELGPRY NGGY+RILKMGFR GDNAPMA+IELL++
Sbjct: 61 ANKRLAFSRLRDREIVLKLFAELGPRYATRNGGYLRILKMGFRQGDNAPMAYIELLDR 118
>gi|374578973|ref|ZP_09652067.1| ribosomal protein S4, bacterial/organelle type [Desulfosporosinus
youngiae DSM 17734]
gi|374415055|gb|EHQ87490.1| ribosomal protein S4, bacterial/organelle type [Desulfosporosinus
youngiae DSM 17734]
Length = 209
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 133/204 (65%), Gaps = 6/204 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ LFLK R KC +D R PGQHG+ + +D+G Q R
Sbjct: 1 MARYTGPVCRLCRREGMKLFLK-GERCYTGKCAIDRRAYAPGQHGQARAKKPTDFGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YG++EKQFR YF E AR KG TGE +L LLE R DNVV+++GF+S+R EARQ
Sbjct: 60 EKQKARRLYGVMEKQFRSYFDEAARRKGVTGENLLSLLERRLDNVVFQLGFASSRPEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE-LSEHSTPFSWITVDA 176
L+SH F VN K VNI SY ++ G++I+V+E +K RI LE L S P SW+++DA
Sbjct: 120 LVSHGHFAVNGKKVNIPSYSVRTGEVIAVKEGSKSSPRIKQLLENLGSRSVP-SWLSLDA 178
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
G + P R + I + L
Sbjct: 179 NAAAGTVVALPTREDIQLPIQEHL 202
>gi|153831469|ref|ZP_01984136.1| ribosomal protein S4, partial [Vibrio cholerae 623-39]
gi|148873050|gb|EDL71185.1| ribosomal protein S4 [Vibrio cholerae 623-39]
Length = 166
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 41 HGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFD 100
HG G R S+YG Q REKQKV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R D
Sbjct: 1 HGARRG-RLSEYGVQLREKQKVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLD 59
Query: 101 NVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSL 160
NVVYRMGF +TR+EARQL+SH+A LVN K+VN+ S+ + D+++VREKAKKQ+RI +L
Sbjct: 60 NVVYRMGFGATRAEARQLVSHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAAL 119
Query: 161 ELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
E++E +WI VD MEG FK P RS+ + DIN+ L
Sbjct: 120 EVAEQREKPTWIEVDVNTMEGTFKRMPERSDLSADINEQL 159
>gi|74316447|ref|YP_314187.1| 30S ribosomal protein S4 [Thiobacillus denitrificans ATCC 25259]
gi|90101734|sp|Q3SLM5.1|RS4_THIDA RecName: Full=30S ribosomal protein S4
gi|74055942|gb|AAZ96382.1| ribosomal protein S4 [Thiobacillus denitrificans ATCC 25259]
Length = 209
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + PK + CRREG LFLK + KC ++ R PGQHG+ SG+R S YG Q R
Sbjct: 1 MARNLDPKCRQCRREGEKLFLK-GEKCFTDKCAIERRAYAPGQHGQKSGARLSGYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFR + KG TGE +L +LESR D+V YRMGF ++R+EARQ
Sbjct: 60 EKQKIRRIYGVLEGQFRLTYKRADSRKGVTGENLLSMLESRLDSVCYRMGFGASRTEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H +VN + VNI SY+++PGD++ V EK+K Q RI + + + WI VDAK
Sbjct: 120 IVRHNGIVVNGRRVNIPSYQVRPGDVVEVAEKSKAQLRIKAAADATATRGYPEWIEVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++G +K+ P RSE + IN+ L
Sbjct: 180 ALKGTYKAHPQRSELPSTINESL 202
>gi|309785618|ref|ZP_07680249.1| ribosomal protein S4 [Shigella dysenteriae 1617]
gi|414578076|ref|ZP_11435248.1| ribosomal protein S4 [Shigella sonnei 3233-85]
gi|415851183|ref|ZP_11527932.1| ribosomal protein S4 [Shigella sonnei 53G]
gi|415858884|ref|ZP_11533336.1| ribosomal protein S4 [Shigella flexneri 2a str. 2457T]
gi|417674245|ref|ZP_12323680.1| ribosomal protein S4 [Shigella dysenteriae 155-74]
gi|417710280|ref|ZP_12359294.1| ribosomal protein S4 [Shigella flexneri VA-6]
gi|417731213|ref|ZP_12379892.1| ribosomal protein S4 [Shigella flexneri K-671]
gi|417741091|ref|ZP_12389655.1| ribosomal protein S4 [Shigella flexneri 4343-70]
gi|417746129|ref|ZP_12394645.1| ribosomal protein S4 [Shigella flexneri 2930-71]
gi|420327477|ref|ZP_14829222.1| ribosomal protein S4 [Shigella flexneri CCH060]
gi|420338981|ref|ZP_14840533.1| ribosomal protein S4 [Shigella flexneri K-315]
gi|420349294|ref|ZP_14850673.1| ribosomal protein S4 [Shigella boydii 965-58]
gi|420360645|ref|ZP_14861599.1| ribosomal protein S4 [Shigella sonnei 3226-85]
gi|420365232|ref|ZP_14866099.1| ribosomal protein S4 [Shigella sonnei 4822-66]
gi|424117780|ref|ZP_17851612.1| ribosomal protein S4 [Escherichia coli PA3]
gi|424540310|ref|ZP_17983249.1| ribosomal protein S4 [Escherichia coli EC4013]
gi|425152145|ref|ZP_18551755.1| ribosomal protein S4 [Escherichia coli 88.0221]
gi|425274486|ref|ZP_18665883.1| ribosomal protein S4 [Escherichia coli TW15901]
gi|425319299|ref|ZP_18708082.1| ribosomal protein S4 [Escherichia coli EC1736]
gi|425325398|ref|ZP_18713749.1| ribosomal protein S4 [Escherichia coli EC1737]
gi|425400537|ref|ZP_18783237.1| ribosomal protein S4 [Escherichia coli EC1869]
gi|429080910|ref|ZP_19144034.1| ribosomal protein S4 [Escherichia coli 99.0713]
gi|308926738|gb|EFP72214.1| ribosomal protein S4 [Shigella dysenteriae 1617]
gi|313647394|gb|EFS11846.1| ribosomal protein S4 [Shigella flexneri 2a str. 2457T]
gi|323164860|gb|EFZ50651.1| ribosomal protein S4 [Shigella sonnei 53G]
gi|332086274|gb|EGI91430.1| ribosomal protein S4 [Shigella dysenteriae 155-74]
gi|332749596|gb|EGJ80013.1| ribosomal protein S4 [Shigella flexneri K-671]
gi|332749738|gb|EGJ80153.1| ribosomal protein S4 [Shigella flexneri 4343-70]
gi|332763708|gb|EGJ93947.1| ribosomal protein S4 [Shigella flexneri 2930-71]
gi|332996506|gb|EGK16133.1| ribosomal protein S4 [Shigella flexneri VA-6]
gi|390675250|gb|EIN51407.1| ribosomal protein S4 [Escherichia coli PA3]
gi|390863502|gb|EIP25636.1| ribosomal protein S4 [Escherichia coli EC4013]
gi|391248239|gb|EIQ07483.1| ribosomal protein S4 [Shigella flexneri CCH060]
gi|391257209|gb|EIQ16329.1| ribosomal protein S4 [Shigella flexneri K-315]
gi|391266714|gb|EIQ25662.1| ribosomal protein S4 [Shigella boydii 965-58]
gi|391278412|gb|EIQ37119.1| ribosomal protein S4 [Shigella sonnei 3226-85]
gi|391282224|gb|EIQ40860.1| ribosomal protein S4 [Shigella sonnei 3233-85]
gi|391292261|gb|EIQ50597.1| ribosomal protein S4 [Shigella sonnei 4822-66]
gi|408190919|gb|EKI16546.1| ribosomal protein S4 [Escherichia coli TW15901]
gi|408236174|gb|EKI59086.1| ribosomal protein S4 [Escherichia coli EC1736]
gi|408239917|gb|EKI62642.1| ribosomal protein S4 [Escherichia coli EC1737]
gi|408316882|gb|EKJ33135.1| ribosomal protein S4 [Escherichia coli EC1869]
gi|408594911|gb|EKK69184.1| ribosomal protein S4 [Escherichia coli 88.0221]
gi|427326259|gb|EKW87682.1| ribosomal protein S4 [Escherichia coli 99.0713]
Length = 154
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 117/146 (80%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E
Sbjct: 2 QLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
ARQL+SH+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ V
Sbjct: 62 ARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
DA KMEG FK +P RS+ + DIN+ L
Sbjct: 122 DAGKMEGTFKRKPERSDLSADINEHL 147
>gi|429121516|ref|ZP_19182137.1| SSU ribosomal protein S4p (S9e) [Cronobacter sakazakii 680]
gi|426323989|emb|CCK12874.1| SSU ribosomal protein S4p (S9e) [Cronobacter sakazakii 680]
Length = 154
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 117/146 (80%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E
Sbjct: 2 QLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
ARQL+SH+A +VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ V
Sbjct: 62 ARQLVSHKAIMVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
DA KMEG FK +P R++ + DIN+ L
Sbjct: 122 DAGKMEGTFKRKPERTDLSADINEHL 147
>gi|260222204|emb|CBA31533.1| 30S ribosomal protein S4 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 137
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 106/133 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R +G TG ++ LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEADRRRGNTGANLMVLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNI 133
H+A VN V
Sbjct: 121 HKAITVNGNPVTF 133
>gi|417430460|ref|ZP_12161130.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|417513970|ref|ZP_12177888.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|423141931|ref|ZP_17129569.1| ribosomal protein S4 [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|353615093|gb|EHC66720.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353635223|gb|EHC81596.1| SSU ribosomal protein S4p [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|379049860|gb|EHY67753.1| ribosomal protein S4 [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 154
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 117/146 (80%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E
Sbjct: 2 QLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
ARQL+SH+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ V
Sbjct: 62 ARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
DA KMEG +K +P RS+ + DIN+ L
Sbjct: 122 DAGKMEGTYKRKPERSDLSADINEHL 147
>gi|340785623|ref|YP_004751088.1| 50S ribosomal protein L17 [Collimonas fungivorans Ter331]
gi|340550890|gb|AEK60265.1| LSU ribosomal protein L17p [Collimonas fungivorans Ter331]
Length = 131
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/118 (78%), Positives = 108/118 (91%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRV+EPILTL K +TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVIEPILTLGKTDTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR++ +KLF+ELGPRY NGGY+RILKMGFRVGDNAPMA+IEL+++
Sbjct: 61 ANKRLAFARLRDREMVLKLFAELGPRYANRNGGYLRILKMGFRVGDNAPMAYIELMDR 118
>gi|291613261|ref|YP_003523418.1| 30S ribosomal protein S4 [Sideroxydans lithotrophicus ES-1]
gi|291583373|gb|ADE11031.1| ribosomal protein S4 [Sideroxydans lithotrophicus ES-1]
Length = 209
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 135/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + K + CRREG LFLK A + KC ++ R PGQHG+ R S+YG Q R
Sbjct: 1 MARNLDAKCRQCRREGEKLFLK-AEKCFTDKCSVERRAYAPGQHGQKKNQRQSEYGGQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG++E QFR + + +G TGE +L++LESR DNV YRMGF ++RSEARQ
Sbjct: 60 EKQKLRRIYGMMEGQFRLTYKRAEQSRGITGESLLQMLESRLDNVSYRMGFGASRSEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H + LVN K VNI SY+++PGD++ V EK++ Q R+ +L+ +E W+ VDAK
Sbjct: 120 VVRHNSILVNGKRVNIPSYQVRPGDVVEVAEKSRNQLRVKAALQAAEQRGFPEWLEVDAK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G FK+ P RSE IN+ L
Sbjct: 180 AFKGTFKAVPQRSELPATINEHL 202
>gi|134096295|ref|YP_001101370.1| 50S ribosomal protein L17 [Herminiimonas arsenicoxydans]
gi|166216176|sp|A4G9R2.1|RL17_HERAR RecName: Full=50S ribosomal protein L17
gi|133740198|emb|CAL63249.1| 50S ribosomal protein L17 [Herminiimonas arsenicoxydans]
Length = 131
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 93/118 (78%), Positives = 107/118 (90%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRV+EPILTL K ++L
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVIEPILTLGKTDSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR++ +KLF+ELGPRY NGGY+RILKMGFR GDNAPMAFIELL++
Sbjct: 61 ANKRLAFNRLRDREMVVKLFAELGPRYANRNGGYLRILKMGFRAGDNAPMAFIELLDR 118
>gi|152980583|ref|YP_001355074.1| 50S ribosomal protein L17 [Janthinobacterium sp. Marseille]
gi|166216177|sp|A6T3H7.1|RL17_JANMA RecName: Full=50S ribosomal protein L17
gi|151280660|gb|ABR89070.1| large subunit ribosomal protein L17 [Janthinobacterium sp.
Marseille]
Length = 131
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 108/118 (91%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRV+EPILTL K ++L
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVIEPILTLGKTDSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR++ +KLF+ELGPRY NGGY+RILKMGFRVGDNAPMAF+EL+++
Sbjct: 61 ANKRLAFNRLRDREMVVKLFAELGPRYANRNGGYLRILKMGFRVGDNAPMAFVELVDR 118
>gi|300309483|ref|YP_003773575.1| 50S ribosomal protein L17 [Herbaspirillum seropedicae SmR1]
gi|409408728|ref|ZP_11257163.1| 50S ribosomal protein L17 [Herbaspirillum sp. GW103]
gi|300072268|gb|ADJ61667.1| 50S ribosomal subunit L17 protein [Herbaspirillum seropedicae SmR1]
gi|386432050|gb|EIJ44878.1| 50S ribosomal protein L17 [Herbaspirillum sp. GW103]
Length = 131
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/118 (80%), Positives = 106/118 (89%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRVVEPILTL K +TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR+I KLFSELGPRY NGGY+RILKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDR 118
>gi|416272764|ref|ZP_11643247.1| SSU ribosomal protein S4p (S9e) [Shigella dysenteriae CDC 74-1112]
gi|320173940|gb|EFW49116.1| SSU ribosomal protein S4p (S9e) [Shigella dysenteriae CDC 74-1112]
Length = 152
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/145 (61%), Positives = 116/145 (80%)
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EA
Sbjct: 1 MREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEA 60
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQL+SH+A +VN +IVNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VD
Sbjct: 61 RQLVSHKAIMVNGRIVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVD 120
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
A KMEG FK +P RS+ + DIN+ L
Sbjct: 121 AGKMEGTFKRKPERSDLSADINEHL 145
>gi|397660273|ref|YP_006500975.1| 30S ribosomal protein S4, partial [Klebsiella oxytoca E718]
gi|394348320|gb|AFN34441.1| SSU ribosomal protein S4p (S9e) [Klebsiella oxytoca E718]
Length = 152
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 116/145 (80%)
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+RMYG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+E+
Sbjct: 1 MREKQKVRRMYGVLERQFRNYYKEAARLKGNTGENLLTLLEGRLDNVVYRMGFGATRAES 60
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQL+SH+A +VN ++VNIASY++K D++S+REKAKKQ+R+ +LEL+E +W+ VD
Sbjct: 61 RQLVSHKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVD 120
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
A KMEG FK +P RS+ + DIN+ L
Sbjct: 121 AGKMEGTFKRQPERSDLSADINEHL 145
>gi|394989442|ref|ZP_10382275.1| 30S ribosomal protein S4 [Sulfuricella denitrificans skB26]
gi|393790942|dbj|GAB71914.1| 30S ribosomal protein S4 [Sulfuricella denitrificans skB26]
Length = 208
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 135/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MA + PK + CRREG LFLK + KC ++ R PGQHG+ R SDYG Q R
Sbjct: 1 MAVNLDPKCRQCRREGEKLFLK-GEKCFTDKCGIERRSYAPGQHGQ-KQVRLSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG+LE+QFR Y+ R KG TGE +L+LLE R DNVV+RMGF +R E+RQ
Sbjct: 59 EKQKVRRIYGVLERQFRGYYAIADRSKGVTGESLLQLLECRLDNVVHRMGFGVSRRESRQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN + VNI SY++K GD++ V EK+K Q RI ++E +E WI VD K
Sbjct: 119 IVRHNGILVNGRRVNIPSYQVKAGDVVEVAEKSKAQLRIKAAVEAAEQRGFPEWIEVDVK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++GV+K++P R+E + IN+ L
Sbjct: 179 ALKGVYKAKPQRTELPSTINEHL 201
>gi|313673441|ref|YP_004051552.1| 30S ribosomal protein S4 [Calditerrivibrio nitroreducens DSM 19672]
gi|312940197|gb|ADR19389.1| SSU ribosomal protein S4P [Calditerrivibrio nitroreducens DSM
19672]
Length = 208
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG+ L+LK R KC ++ + PGQHG++ + SDYG Q R
Sbjct: 1 MARYTGPSCKLCRREGMKLYLK-GERCYKDKCGIEKKGYPPGQHGQLK-KKLSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YGILE QFR YF +KG TGE +L+LLE R DN VYR GF+S+R++ARQ
Sbjct: 59 EKQKVKRIYGILESQFRLYFERATNMKGITGENLLQLLERRLDNAVYRAGFASSRTQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN K VNI SY +K GD+I +REK++ I SLE SE W+++D
Sbjct: 119 LVRHNHFTVNGKKVNIPSYLLKVGDVIELREKSRDNKLIVESLETSEGRGTAEWLSIDKA 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ V P RS+ DI + L
Sbjct: 179 AFKAVVNRLPERSDIGYDIQEHL 201
>gi|374993006|ref|YP_004968505.1| 30S ribosomal protein S4 [Desulfosporosinus orientis DSM 765]
gi|357211372|gb|AET65990.1| ribosomal protein S4, bacterial/organelle type [Desulfosporosinus
orientis DSM 765]
Length = 209
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 133/204 (65%), Gaps = 6/204 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ LFLK R KC +D R PGQHG+ + +D+G Q R
Sbjct: 1 MARYSGPVCRLCRREGMKLFLK-GERCYTGKCAIDRRAYAPGQHGQARAKKPTDFGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YG+LEKQFR YF E AR KG TGE +L LLE R DNVV+++GF+++R+E RQ
Sbjct: 60 EKQKARRLYGVLEKQFRSYFDEAARRKGVTGETLLSLLERRLDNVVFQLGFAASRAEGRQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE-LSEHSTPFSWITVDA 176
L+SH F VN + VNIASY ++ G++I+V+E +K R+ LE L + P W+++DA
Sbjct: 120 LVSHGHFTVNGRKVNIASYSVRAGEVIAVKEGSKSSPRMKQLLENLGSRAVP-GWLSLDA 178
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
G + P R + I + L
Sbjct: 179 NSASGTVVALPTREDIQLPIQEHL 202
>gi|417704580|ref|ZP_12353673.1| ribosomal protein S4 [Shigella flexneri K-218]
gi|418268762|ref|ZP_12887431.1| ribosomal protein S4 [Shigella sonnei str. Moseley]
gi|419072624|ref|ZP_13618214.1| ribosomal protein S4 [Escherichia coli DEC3E]
gi|420323266|ref|ZP_14825082.1| ribosomal protein S4 [Shigella flexneri 2850-71]
gi|421685412|ref|ZP_16125188.1| ribosomal protein S4 [Shigella flexneri 1485-80]
gi|445015786|ref|ZP_21331849.1| ribosomal protein S4 [Escherichia coli PA8]
gi|445036869|ref|ZP_21352385.1| ribosomal protein S4 [Escherichia coli 99.1762]
gi|332997104|gb|EGK16720.1| ribosomal protein S4 [Shigella flexneri K-218]
gi|377905448|gb|EHU69717.1| ribosomal protein S4 [Escherichia coli DEC3E]
gi|391244216|gb|EIQ03503.1| ribosomal protein S4 [Shigella flexneri 2850-71]
gi|397896438|gb|EJL12857.1| ribosomal protein S4 [Shigella sonnei str. Moseley]
gi|404334900|gb|EJZ61376.1| ribosomal protein S4 [Shigella flexneri 1485-80]
gi|444639525|gb|ELW12834.1| ribosomal protein S4 [Escherichia coli PA8]
gi|444642077|gb|ELW15287.1| ribosomal protein S4 [Escherichia coli 99.1762]
Length = 152
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 116/145 (80%)
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EA
Sbjct: 1 MREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEA 60
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQL+SH+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VD
Sbjct: 61 RQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVD 120
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
A KMEG FK +P RS+ + DIN+ L
Sbjct: 121 AGKMEGTFKRKPERSDLSADINEHL 145
>gi|429102062|ref|ZP_19164036.1| SSU ribosomal protein S4p (S9e) [Cronobacter turicensis 564]
gi|426288711|emb|CCJ90149.1| SSU ribosomal protein S4p (S9e) [Cronobacter turicensis 564]
Length = 152
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 116/145 (80%)
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EA
Sbjct: 1 MREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEA 60
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQL+SH+A +VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VD
Sbjct: 61 RQLVSHKAIMVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVD 120
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
A KMEG FK +P R++ + DIN+ L
Sbjct: 121 AGKMEGTFKRKPERTDLSADINEHL 145
>gi|427399566|ref|ZP_18890804.1| 50S ribosomal protein L17 [Massilia timonae CCUG 45783]
gi|425721328|gb|EKU84241.1| 50S ribosomal protein L17 [Massilia timonae CCUG 45783]
Length = 131
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 107/118 (90%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTT+PKAKELRRV+EPILTL K +TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTVPKAKELRRVIEPILTLGKTDTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR++ KLF+ELGPRY NGGY+RILKMGFRVGDNAPMA++ELL++
Sbjct: 61 ANKRLAFARLRDREMVQKLFAELGPRYANRNGGYLRILKMGFRVGDNAPMAYVELLDR 118
>gi|302877826|ref|YP_003846390.1| 30S ribosomal protein S4 [Gallionella capsiferriformans ES-2]
gi|302580615|gb|ADL54626.1| ribosomal protein S4 [Gallionella capsiferriformans ES-2]
Length = 209
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 134/203 (66%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR + K + CRREG LFLK + KC ++ R PGQHG+ +R S+YG Q R
Sbjct: 1 MARNLDAKCRKCRREGEKLFLK-GEKCFTDKCAVERRAYPPGQHGQRRNTRLSEYGGQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG+LE+QFR + + +G TGE +L+LLESR DNV YRMGF ++R+EARQ
Sbjct: 60 EKQKVRRIYGVLERQFRLTYKKAEASRGITGESLLQLLESRLDNVSYRMGFGASRAEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H A LVN K VNI SY+++PGD++ V EK+K Q RI ++ +E WI +D K
Sbjct: 120 VVRHNALLVNGKRVNIPSYQVRPGDVVEVAEKSKAQLRIKAAIAAAETRGFPEWIEMDTK 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G FK+ P R+E IN+ L
Sbjct: 180 AFKGTFKANPQRAELPATINEHL 202
>gi|429093196|ref|ZP_19155799.1| SSU ribosomal protein S4p (S9e) [Cronobacter dublinensis 1210]
gi|426741941|emb|CCJ81912.1| SSU ribosomal protein S4p (S9e) [Cronobacter dublinensis 1210]
Length = 152
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 116/145 (80%)
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EA
Sbjct: 1 MREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEA 60
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQL+SH+A +VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VD
Sbjct: 61 RQLVSHKAIMVNGRVVNIASYQVGPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVD 120
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
A KMEG FK +P R++ + DIN+ L
Sbjct: 121 AGKMEGTFKRKPERTDLSADINEHL 145
>gi|417720200|ref|ZP_12369074.1| ribosomal protein S4 [Shigella flexneri K-227]
gi|333012800|gb|EGK32178.1| ribosomal protein S4 [Shigella flexneri K-227]
Length = 152
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 116/145 (80%)
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EA
Sbjct: 1 MREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLVLLEGRLDNVVYRMGFGATRAEA 60
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQL+SH+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VD
Sbjct: 61 RQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVD 120
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
A KMEG FK +P RS+ + DIN+ L
Sbjct: 121 AGKMEGTFKRKPERSDLSADINEHL 145
>gi|345858437|ref|ZP_08810830.1| ribosomal protein S4 [Desulfosporosinus sp. OT]
gi|344328456|gb|EGW39841.1| ribosomal protein S4 [Desulfosporosinus sp. OT]
Length = 209
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 132/204 (64%), Gaps = 6/204 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ LFLK R KC +D R PGQHG+ + ++YG Q R
Sbjct: 1 MARYTGPVCRLCRREGLKLFLK-GERCYTGKCAIDRRAYAPGQHGQARAKKPTEYGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +RMYG++EKQFR YF E AR KG TGE +L LLE R DNV++ +GF+S+R EARQ
Sbjct: 60 EKQKARRMYGVMEKQFRHYFDEAARRKGVTGENLLSLLERRLDNVIFHLGFASSRPEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE-LSEHSTPFSWITVDA 176
L++H F +N K V+IASY ++ G++I+VRE +K R+ LE L + P W+++DA
Sbjct: 120 LVNHGHFTINGKKVDIASYSVRAGEVIAVREGSKSSPRMKQLLENLGSRTVPV-WLSLDA 178
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
G + P R + I + L
Sbjct: 179 NTAAGTVVALPTREDIQLPIQEHL 202
>gi|378962271|ref|YP_005219757.1| 30S ribosomal protein S4, partial [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|374356143|gb|AEZ47904.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 152
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 116/145 (80%)
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQKV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EA
Sbjct: 1 MREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEA 60
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
RQL+SH+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VD
Sbjct: 61 RQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVD 120
Query: 176 AKKMEGVFKSEPNRSEFANDINDLL 200
A KMEG +K +P RS+ + DIN+ L
Sbjct: 121 AGKMEGTYKRKPERSDLSADINEHL 145
>gi|395760729|ref|ZP_10441398.1| 50S ribosomal protein L17 [Janthinobacterium lividum PAMC 25724]
Length = 130
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/118 (78%), Positives = 106/118 (89%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH HG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRVVEPILTL K + L
Sbjct: 1 MRHGHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDCL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR++ +KLF+ELGPRY NGGYVRILKMGFRVGDNAPMAF+EL+++
Sbjct: 61 ANKRLAFNRLRDREMVLKLFAELGPRYANRNGGYVRILKMGFRVGDNAPMAFVELMDR 118
>gi|238763710|ref|ZP_04624669.1| 30S ribosomal protein S4 [Yersinia kristensenii ATCC 33638]
gi|238698012|gb|EEP90770.1| 30S ribosomal protein S4 [Yersinia kristensenii ATCC 33638]
Length = 154
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 117/146 (80%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LE+QFR Y+ E ARLKG TG +L+LLE R DNVVYRMGF +TR+E
Sbjct: 2 QLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
+RQL+SH+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ V
Sbjct: 62 SRQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
DA KMEGVFK P R++ + DIN+ L
Sbjct: 122 DAVKMEGVFKRIPERTDLSADINEHL 147
>gi|239787587|emb|CAX84055.1| 30S ribosomal protein S4 [uncultured bacterium]
Length = 208
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G K +LCRRE LFLK + KC ++ R PG HG+ + SDYG R
Sbjct: 1 MARYFGSKCRLCRREAAKLFLK-GEKCYSDKCAMERRNYGPGLHGQ-RRRKVSDYGVHLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+KR Y +LEKQF YF + AR+ G TGE +L LLE R DNVVYR+GFSS+RSEARQ
Sbjct: 59 EKQKIKRTYCLLEKQFHNYFQKAARMPGVTGENLLILLERRLDNVVYRLGFSSSRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++SH+ LVN K +NI SY +KPGD I+V E+ K RI +L+ + + SW+ VD
Sbjct: 119 VVSHKQILVNGKPINICSYLVKPGDKIAVNEQCKAHLRIKAALDHAMRRSFPSWLEVDPV 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M G F S P+R++ D N+ L
Sbjct: 179 AMSGTFLSFPDRADLPADYNENL 201
>gi|339484160|ref|YP_004695946.1| 30S ribosomal protein S4 [Nitrosomonas sp. Is79A3]
gi|338806305|gb|AEJ02547.1| ribosomal protein S4 [Nitrosomonas sp. Is79A3]
Length = 223
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 134/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
+AR + PK K CRREG LFLK + KC ++ R PGQHG+ G R SDYG Q R
Sbjct: 16 LARNLDPKCKQCRREGEKLFLK-GEKCFTDKCAIERRNYPPGQHGQKKG-RLSDYGGQLR 73
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++++YGILE QFR + + +G TG+ +L+LLESR DNV Y MGF S+RSEARQ
Sbjct: 74 EKQKIRKIYGILESQFRNIYKSADQQRGVTGDNLLQLLESRLDNVAYHMGFGSSRSEARQ 133
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN K VNI +Y +K GD I + + AK Q RI S+E ++ +WI ++ K
Sbjct: 134 IVRHNCILVNGKRVNIPAYLVKTGDTIEITKNAKDQLRIKASIEAADRRNFPAWIDMNVK 193
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+M+G+FKS+P RSE IN+ L
Sbjct: 194 EMKGIFKSKPERSELPATINESL 216
>gi|237747391|ref|ZP_04577871.1| 50S ribosomal subunit protein L17 [Oxalobacter formigenes HOxBLS]
gi|229378742|gb|EEO28833.1| 50S ribosomal subunit protein L17 [Oxalobacter formigenes HOxBLS]
Length = 129
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 107/118 (90%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRVVEPI+TL K +T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPIITLGKTDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR+I +KLF+ELGPR+ NGGY+RILKMGFR GDNAPMA++EL+++
Sbjct: 61 ANKRLAFNRLRDREIVVKLFNELGPRFANRNGGYLRILKMGFRAGDNAPMAYVELMDR 118
>gi|237749541|ref|ZP_04580021.1| large subunit ribosomal protein L17 [Oxalobacter formigenes OXCC13]
gi|229380903|gb|EEO30994.1| large subunit ribosomal protein L17 [Oxalobacter formigenes OXCC13]
Length = 130
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/118 (77%), Positives = 108/118 (91%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNMT+SLLR+E IKTTLPKAKELRRVVEPI+TL K +++
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPIITLGKIDSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR+I +KLF+ELGPR+ NGGY+RILKMGFRVGDNAPMA++ELL++
Sbjct: 61 ANKRLAFNRLRDREIVVKLFNELGPRFANRNGGYLRILKMGFRVGDNAPMAYVELLDR 118
>gi|339484159|ref|YP_004695945.1| DNA-directed RNA polymerase subunit alpha [Nitrosomonas sp. Is79A3]
gi|338806304|gb|AEJ02546.1| DNA-directed RNA polymerase subunit alpha [Nitrosomonas sp. Is79A3]
Length = 334
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/131 (65%), Positives = 113/131 (86%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N+LL PRIIDV+ + HAKV+MEPFERGYG+TLGNALRR+LLSSM G APTEV I+G +
Sbjct: 4 NELLTPRIIDVQNISPLHAKVVMEPFERGYGHTLGNALRRILLSSMTGFAPTEVKIAGVV 63
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYS+L+GVQEDI+DI+LN+KG++LKL+N D AI+ LKK GKCVV A DI++ D+E++N
Sbjct: 64 HEYSALDGVQEDIVDILLNIKGIVLKLHNNDEAIITLKKSGKCVVTAGDIDVGHDVEILN 123
Query: 317 PNHIIAHLSDN 327
P+H++AHL+ +
Sbjct: 124 PDHVLAHLTSD 134
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIR +ARVLV QL+VFA LE+TP+ KE + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRFAARVLVQQLSVFADLESTPIPKE-QPQVPQIDPILLRPVDDLELTVRSANCLKV 268
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASR 425
ENI+ IGDLIQR+E ELLRTPNLGRKSLNEIKE+LASR
Sbjct: 269 ENIYYIGDLIQRTEAELLRTPNLGRKSLNEIKEVLASR 306
>gi|167587746|ref|ZP_02380134.1| DNA-directed RNA polymerase subunit alpha [Burkholderia ubonensis
Bu]
Length = 325
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 111/127 (87%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A+DIEL D E++NPN
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAADIELAHDCEVINPN 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|224373704|ref|YP_002608076.1| 30S ribosomal protein S4 [Nautilia profundicola AmH]
gi|254764602|sp|B9L6T8.1|RS4_NAUPA RecName: Full=30S ribosomal protein S4
gi|223590010|gb|ACM93746.1| ribosomal protein S4 [Nautilia profundicola AmH]
Length = 208
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 131/194 (67%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP K+ RR G+ L LK RR L K LD RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYTGPVEKIERRLGVSLELKGERR-LAGKSALDKRPYAPGQHGQ-RRTKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+K YG+LEKQFR++F E R +G TGE ++KLLE R DNVVYRMGF+STR ARQ
Sbjct: 59 EKQKIKFYYGVLEKQFRKFFREANRQEGNTGENLIKLLERRLDNVVYRMGFASTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K VNI SY +K GD I +REK+K +I +LELS+ + W+ VD +
Sbjct: 119 LVTHGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQRALELSQQTGIAPWVDVDKE 178
Query: 178 KMEGVFKSEPNRSE 191
K+ GVF+ P R E
Sbjct: 179 KLVGVFQRVPEREE 192
>gi|53720795|ref|YP_109781.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei K96243]
gi|53723828|ref|YP_104140.1| DNA-directed RNA polymerase subunit alpha [Burkholderia mallei ATCC
23344]
gi|76808919|ref|YP_335114.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1710b]
gi|121599305|ref|YP_994430.1| DNA-directed RNA polymerase subunit alpha [Burkholderia mallei
SAVP1]
gi|124385479|ref|YP_001027921.1| DNA-directed RNA polymerase subunit alpha [Burkholderia mallei NCTC
10229]
gi|126440174|ref|YP_001060724.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 668]
gi|126450024|ref|YP_001083016.1| DNA-directed RNA polymerase subunit alpha [Burkholderia mallei NCTC
10247]
gi|126453965|ref|YP_001068008.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1106a]
gi|134283239|ref|ZP_01769940.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 305]
gi|167001673|ref|ZP_02267465.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
PRL-20]
gi|167721551|ref|ZP_02404787.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei DM98]
gi|167740525|ref|ZP_02413299.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 14]
gi|167817730|ref|ZP_02449410.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 91]
gi|167826127|ref|ZP_02457598.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 9]
gi|167847639|ref|ZP_02473147.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei B7210]
gi|167896211|ref|ZP_02483613.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 7894]
gi|167904593|ref|ZP_02491798.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei NCTC 13177]
gi|167912858|ref|ZP_02499949.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 112]
gi|167920817|ref|ZP_02507908.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei BCC215]
gi|217424731|ref|ZP_03456228.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 576]
gi|226198177|ref|ZP_03793748.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237814119|ref|YP_002898570.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei MSHR346]
gi|238562959|ref|ZP_00439640.2| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei GB8
horse 4]
gi|242316674|ref|ZP_04815690.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1106b]
gi|254174996|ref|ZP_04881657.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
ATCC 10399]
gi|254180365|ref|ZP_04886963.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1655]
gi|254190328|ref|ZP_04896836.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|254198455|ref|ZP_04904876.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei S13]
gi|254201213|ref|ZP_04907577.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
FMH]
gi|254206554|ref|ZP_04912905.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
JHU]
gi|254260470|ref|ZP_04951524.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1710a]
gi|254300602|ref|ZP_04968047.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 406e]
gi|254357093|ref|ZP_04973367.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
2002721280]
gi|386863446|ref|YP_006276395.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1026b]
gi|403520441|ref|YP_006654575.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei BPC006]
gi|418392853|ref|ZP_12968603.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 354a]
gi|418534595|ref|ZP_13100434.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1026a]
gi|418542139|ref|ZP_13107593.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1258a]
gi|418548664|ref|ZP_13113772.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1258b]
gi|418554600|ref|ZP_13119380.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 354e]
gi|61215842|sp|Q62GN1.1|RPOA_BURMA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|61215856|sp|Q63Q37.1|RPOA_BURPS RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|90101574|sp|Q3JMT9.1|RPOA_BURP1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|158513536|sp|A3P087.1|RPOA_BURP0 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|166229261|sp|A3MRY0.1|RPOA_BURM7 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|166229262|sp|A2S7K2.1|RPOA_BURM9 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|166229263|sp|A1V877.1|RPOA_BURMS RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|166229264|sp|A3NEF3.1|RPOA_BURP6 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|52211209|emb|CAH37198.1| DNA-directed RNA polymerase alpha chain [Burkholderia pseudomallei
K96243]
gi|52427251|gb|AAU47844.1| dna-directed rna polymerase alpha chain [Burkholderia mallei ATCC
23344]
gi|76578372|gb|ABA47847.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1710b]
gi|121228115|gb|ABM50633.1| DNA-directed rna polymerase, alpha subunit [Burkholderia mallei
SAVP1]
gi|124293499|gb|ABN02768.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
NCTC 10229]
gi|126219667|gb|ABN83173.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 668]
gi|126227607|gb|ABN91147.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1106a]
gi|126242894|gb|ABO05987.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
NCTC 10247]
gi|134245434|gb|EBA45527.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 305]
gi|147747107|gb|EDK54183.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
FMH]
gi|147752096|gb|EDK59162.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
JHU]
gi|148026157|gb|EDK84242.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
2002721280]
gi|157810631|gb|EDO87801.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 406e]
gi|157938004|gb|EDO93674.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|160696041|gb|EDP86011.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
ATCC 10399]
gi|169655195|gb|EDS87888.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei S13]
gi|184210904|gb|EDU07947.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1655]
gi|217392187|gb|EEC32212.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 576]
gi|225929697|gb|EEH25713.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237503877|gb|ACQ96195.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei MSHR346]
gi|238521642|gb|EEP85092.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei GB8
horse 4]
gi|242139913|gb|EES26315.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1106b]
gi|243062570|gb|EES44756.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia mallei
PRL-20]
gi|254219159|gb|EET08543.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
pseudomallei 1710a]
gi|385356318|gb|EIF62435.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1258a]
gi|385357626|gb|EIF63672.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1258b]
gi|385358964|gb|EIF64944.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1026a]
gi|385370076|gb|EIF75349.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 354e]
gi|385374931|gb|EIF79734.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 354a]
gi|385660574|gb|AFI67997.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei 1026b]
gi|403076083|gb|AFR17663.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
pseudomallei BPC006]
Length = 325
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NPN
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPN 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|83720584|ref|YP_443546.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
thailandensis E264]
gi|167564390|ref|ZP_02357306.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
oklahomensis EO147]
gi|167571537|ref|ZP_02364411.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
oklahomensis C6786]
gi|167582597|ref|ZP_02375471.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
thailandensis TXDOH]
gi|167620711|ref|ZP_02389342.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
thailandensis Bt4]
gi|167838186|ref|ZP_02465045.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
thailandensis MSMB43]
gi|257137668|ref|ZP_05585930.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
thailandensis E264]
gi|119366670|sp|Q2SU53.1|RPOA_BURTA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|83654409|gb|ABC38472.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
thailandensis E264]
Length = 325
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NPN
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPN 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|254253494|ref|ZP_04946812.1| DNA-directed RNA polymerase [Burkholderia dolosa AUO158]
gi|416902469|ref|ZP_11930480.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. TJI49]
gi|124896103|gb|EAY69983.1| DNA-directed RNA polymerase [Burkholderia dolosa AUO158]
gi|325529704|gb|EGD06567.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. TJI49]
Length = 325
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NPN
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPN 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|254516934|ref|ZP_05128992.1| ribosomal protein S4 [gamma proteobacterium NOR5-3]
gi|219674439|gb|EED30807.1| ribosomal protein S4 [gamma proteobacterium NOR5-3]
Length = 154
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 118/146 (80%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLESR DNVVYR+GF STRSE
Sbjct: 2 QLREKQKVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRIGFGSTRSE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
+RQL++H+A LVN K+VNIASYK+K GD++S+REKAKKQ R+ +++ L+ WI +
Sbjct: 62 SRQLVAHKAILVNGKVVNIASYKVKAGDVVSLREKAKKQLRVQSAMALAAQRGEPEWIDI 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
+ +K+E V+K+ P+R + ++DIN+ L
Sbjct: 122 NVEKLEAVYKAAPDRQDLSSDINENL 147
>gi|149195169|ref|ZP_01872260.1| 30S ribosomal protein S4 [Caminibacter mediatlanticus TB-2]
gi|149134721|gb|EDM23206.1| 30S ribosomal protein S4 [Caminibacter mediatlanticus TB-2]
Length = 208
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 134/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP ++ RR G+ L LK RR L K LD RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYTGPVERIERRLGVSLELKGERR-LAGKSALDRRPYAPGQHGQ-RRAKISEYGQQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+K YG+LEKQFRR+F E R +G TGE ++KLLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKIKYYYGVLEKQFRRFFKEANRQEGNTGENLIKLLERRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K VNI SY +K GD I +REK+K +I +LEL+ + W+ VD +
Sbjct: 119 LVTHGHILVNGKRVNIPSYIVKEGDRIEIREKSKNNPQIQRALELTAQTGIAPWVDVDKE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
KM GVF+ P R E +++ L
Sbjct: 179 KMVGVFQRVPEREEVNIPVDERL 201
>gi|402570863|ref|YP_006620206.1| 30S ribosomal protein S4 [Desulfosporosinus meridiei DSM 13257]
gi|402252060|gb|AFQ42335.1| SSU ribosomal protein S4P [Desulfosporosinus meridiei DSM 13257]
Length = 209
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 132/204 (64%), Gaps = 6/204 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ LFLK R KC +D R PGQHG+ G + +D+G Q R
Sbjct: 1 MARYTGPVCRLCRREGMKLFLK-GERCYTGKCAIDRRAYAPGQHGQARGKKPTDFGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YG++EKQF YF E AR KG TGE +L LLE R DNV++++GF+S+R EARQ
Sbjct: 60 EKQKARRIYGVMEKQFHSYFDEAARRKGVTGENLLSLLERRLDNVIFQLGFASSRPEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE-LSEHSTPFSWITVDA 176
L+SH F +N K V+I SY ++ G++I+V+E +K R+ LE L + P W+++DA
Sbjct: 120 LVSHGHFTINGKKVDIPSYSVRIGEVIAVKEGSKSSPRMKQLLENLGSRTVP-GWLSLDA 178
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
G + P R + I + L
Sbjct: 179 NAASGTVVALPTREDIQLPIQEHL 202
>gi|424907046|ref|ZP_18330537.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
thailandensis MSMB43]
gi|390927403|gb|EIP84812.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
thailandensis MSMB43]
Length = 321
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
+LKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 1 MLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 60
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NPN
Sbjct: 61 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPN 120
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 121 HVIAHLS 127
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 206 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 265
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 304
>gi|78064950|ref|YP_367719.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. 383]
gi|107024277|ref|YP_622604.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cenocepacia
AU 1054]
gi|115350348|ref|YP_772187.1| DNA-directed RNA polymerase subunit alpha [Burkholderia ambifaria
AMMD]
gi|116688398|ref|YP_834021.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cenocepacia
HI2424]
gi|134294469|ref|YP_001118204.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
vietnamiensis G4]
gi|170700720|ref|ZP_02891715.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia ambifaria
IOP40-10]
gi|170731708|ref|YP_001763655.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cenocepacia
MC0-3]
gi|171318374|ref|ZP_02907532.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia ambifaria
MEX-5]
gi|172059367|ref|YP_001807019.1| DNA-directed RNA polymerase subunit alpha [Burkholderia ambifaria
MC40-6]
gi|206558667|ref|YP_002229427.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cenocepacia
J2315]
gi|254246577|ref|ZP_04939898.1| DNA-directed RNA polymerase [Burkholderia cenocepacia PC184]
gi|387901056|ref|YP_006331395.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. KJ006]
gi|402567891|ref|YP_006617236.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cepacia
GG4]
gi|421864097|ref|ZP_16295785.1| DNA-directed RNA polymerase alpha subunit [Burkholderia cenocepacia
H111]
gi|444357329|ref|ZP_21158872.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
cenocepacia BC7]
gi|444366833|ref|ZP_21166844.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
cenocepacia K56-2Valvano]
gi|90101525|sp|Q39KE1.1|RPOA_BURS3 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|119366669|sp|Q1BRX4.1|RPOA_BURCA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|122324240|sp|Q0BJ20.1|RPOA_BURCM RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|158512278|sp|A0K3Q1.1|RPOA_BURCH RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|166229265|sp|A4JAR6.1|RPOA_BURVG RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|238688546|sp|B1JU48.1|RPOA_BURCC RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|238689152|sp|B1YRQ5.1|RPOA_BURA4 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|238693061|sp|B4E5E6.1|RPOA_BURCJ RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|77965695|gb|ABB07075.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. 383]
gi|105894466|gb|ABF77631.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cenocepacia
AU 1054]
gi|115280336|gb|ABI85853.1| DNA-directed RNA polymerase subunit alpha [Burkholderia ambifaria
AMMD]
gi|116646487|gb|ABK07128.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cenocepacia
HI2424]
gi|124871353|gb|EAY63069.1| DNA-directed RNA polymerase [Burkholderia cenocepacia PC184]
gi|134137626|gb|ABO53369.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
vietnamiensis G4]
gi|169814950|gb|ACA89533.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
cenocepacia MC0-3]
gi|170134390|gb|EDT02723.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia ambifaria
IOP40-10]
gi|171096452|gb|EDT41351.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia ambifaria
MEX-5]
gi|171991884|gb|ACB62803.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia ambifaria
MC40-6]
gi|198034704|emb|CAR50571.1| DNA-directed RNA polymerase alpha chain [Burkholderia cenocepacia
J2315]
gi|358076050|emb|CCE46663.1| DNA-directed RNA polymerase alpha subunit [Burkholderia cenocepacia
H111]
gi|387575948|gb|AFJ84664.1| DNA-directed RNA polymerase alpha subunit [Burkholderia sp. KJ006]
gi|402249088|gb|AFQ49542.1| DNA-directed RNA polymerase subunit alpha [Burkholderia cepacia
GG4]
gi|443603993|gb|ELT71966.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
cenocepacia K56-2Valvano]
gi|443606438|gb|ELT74218.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
cenocepacia BC7]
Length = 325
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHA+V+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHARVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NPN
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPN 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|319955881|ref|YP_004167144.1| 30S ribosomal protein S4 [Nitratifractor salsuginis DSM 16511]
gi|319418285|gb|ADV45395.1| SSU ribosomal protein S4P [Nitratifractor salsuginis DSM 16511]
Length = 208
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 136/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP+ KL RR G+DL LK RR L K L+ RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYRGPREKLERRLGVDLGLKGERR-LAGKSALEKRPYPPGQHGQ-RRTKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F E RL+G TGE++++LLE R DNVVYRMGF++TR+ ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRSIFQEANRLEGNTGELLIQLLEQRLDNVVYRMGFATTRAFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K V+I SY++KPG I +REK+K +I S+EL+ + W+ VD +
Sbjct: 119 LVNHGHVLVDGKRVDIPSYRVKPGQKIEIREKSKNNPQIQRSVELTNQTGIVEWVDVDKE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G+F P R E + + + L
Sbjct: 179 KLFGIFTRIPEREEISIPVEERL 201
>gi|161523455|ref|YP_001578467.1| DNA-directed RNA polymerase subunit alpha [Burkholderia multivorans
ATCC 17616]
gi|189351772|ref|YP_001947400.1| DNA-directed RNA polymerase subunit alpha [Burkholderia multivorans
ATCC 17616]
gi|221201591|ref|ZP_03574629.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CGD2M]
gi|221207334|ref|ZP_03580344.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CGD2]
gi|221213472|ref|ZP_03586447.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CGD1]
gi|421471443|ref|ZP_15919729.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans ATCC BAA-247]
gi|421479173|ref|ZP_15926888.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CF2]
gi|238687015|sp|A9ADL9.1|RPOA_BURM1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|160340884|gb|ABX13970.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans ATCC 17616]
gi|189335794|dbj|BAG44864.1| DNA-directed RNA polymerase subunit alpha [Burkholderia multivorans
ATCC 17616]
gi|221166924|gb|EED99395.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CGD1]
gi|221172922|gb|EEE05359.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CGD2]
gi|221178407|gb|EEE10816.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CGD2M]
gi|400223454|gb|EJO53751.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans CF2]
gi|400225474|gb|EJO55637.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
multivorans ATCC BAA-247]
Length = 325
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NP+
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|291280122|ref|YP_003496957.1| 30S ribosomal protein S4 [Deferribacter desulfuricans SSM1]
gi|290754824|dbj|BAI81201.1| 30S ribosomal protein S4 [Deferribacter desulfuricans SSM1]
Length = 208
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG+ L+LK R KC + + PGQHG++ + SDYG Q R
Sbjct: 1 MARYTGPVCKLCRREGMKLYLK-GERCFKDKCAFEKKGYPPGQHGQMR-KKISDYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE+QFRRYF R++G TGE +L+LLE R DNVVYR GF+ +R EARQ
Sbjct: 59 EKQKVKRIYGVLERQFRRYFDRATRMQGITGENLLQLLERRLDNVVYRSGFARSRKEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
LI H FLVN + VNI S+ K GD++ V+EK++ I S+E +E WI++D
Sbjct: 119 LIRHNHFLVNGRKVNIPSFLCKEGDVVEVKEKSRDIAAIKESVETAEGRGLPEWISLDKT 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ P RS+ D+ + L
Sbjct: 179 NFKATVNRLPVRSDINYDVQEHL 201
>gi|325981830|ref|YP_004294232.1| DNA-directed RNA polymerase subunit alpha [Nitrosomonas sp. AL212]
gi|325531349|gb|ADZ26070.1| DNA-directed RNA polymerase, alpha subunit [Nitrosomonas sp. AL212]
Length = 335
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 110/128 (85%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
DLL PRIIDV+ + HAKV+MEPFERGYG+TLGNALRR+LLSSM G APTE+ I+G LH
Sbjct: 5 DLLTPRIIDVQNISPLHAKVVMEPFERGYGHTLGNALRRILLSSMTGYAPTEIKIAGVLH 64
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
EYS+L+GVQED++DI++N+KG++LKL+N D IL+LKK GK +V A+DIEL D+E++NP
Sbjct: 65 EYSALDGVQEDVVDILMNIKGIVLKLHNNDEVILSLKKSGKGIVTAADIELSHDVEIINP 124
Query: 318 NHIIAHLS 325
H+IAHL+
Sbjct: 125 EHVIAHLT 132
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIR +ARVLV QL+VFA LE+TP+ KE + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 211 EEAIRFAARVLVQQLSVFADLESTPLPKEKPQA-PQIDPILLRPVDDLELTVRSANCLKV 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASR 425
ENI+ IGDLIQR+E ELLRTPNLGRKSLNEIKE+LASR
Sbjct: 270 ENIYYIGDLIQRTEAELLRTPNLGRKSLNEIKEVLASR 307
>gi|254283192|ref|ZP_04958160.1| ribosomal protein S4 [gamma proteobacterium NOR51-B]
gi|219679395|gb|EED35744.1| ribosomal protein S4 [gamma proteobacterium NOR51-B]
Length = 154
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 116/146 (79%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF STR+E
Sbjct: 2 QLREKQKVRRIYGVLEKQFRNYYKEAARLKGATGENLLQLLECRLDNVVYRMGFGSTRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
ARQL++H+ L+N +VNI SY++KPGD++S+REKAKKQ R+ +L L+E WI V
Sbjct: 62 ARQLVAHKGILINNAVVNIPSYQVKPGDVVSIREKAKKQLRVQAALSLAEQRGEPVWIEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
+ +K+EG FK++P R++ +++IN+ L
Sbjct: 122 NNEKLEGTFKAKPERADLSSEINENL 147
>gi|113869405|ref|YP_727894.1| DNA-directed RNA polymerase subunit alpha [Ralstonia eutropha H16]
gi|194290997|ref|YP_002006904.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus taiwanensis
LMG 19424]
gi|339327490|ref|YP_004687183.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus necator N-1]
gi|123328832|sp|Q0K645.1|RPOA_RALEH RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|238692784|sp|B3R7E3.1|RPOA_CUPTR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|57506670|dbj|BAD86667.1| RNA polymerase alpha subunit [Cupriavidus necator]
gi|113528181|emb|CAJ94526.1| DNA-directed RNA polymerase alpha subunit [Ralstonia eutropha H16]
gi|193224832|emb|CAQ70843.1| RNA polymerase, alpha subunit; RNA polymerase alpha chain family
[Cupriavidus taiwanensis LMG 19424]
gi|338167647|gb|AEI78702.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus necator N-1]
Length = 326
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 112/127 (88%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NPN
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKDGEGVVTAADIELPHDVEIINPN 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/100 (81%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSS-LEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T E SS ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAASSRTPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|189424436|ref|YP_001951613.1| 30S ribosomal protein S4 [Geobacter lovleyi SZ]
gi|226699069|sp|B3E856.1|RS4_GEOLS RecName: Full=30S ribosomal protein S4
gi|189420695|gb|ACD95093.1| ribosomal protein S4 [Geobacter lovleyi SZ]
Length = 208
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 132/203 (65%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARYIGP +LCRRE ++LFLK R D KC L R PGQHG+ S+TSDYG Q R
Sbjct: 1 MARYIGPSCRLCRRENMELFLKGDRCYTD-KCALKRRNYPPGQHGQ-GRSKTSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LEKQFR YF R+KG TGE +L LLE R DNVVYR+GF+S+RSEARQ
Sbjct: 59 EKQKVKRLYGLLEKQFRSYFDRADRMKGVTGENLLSLLERRLDNVVYRLGFASSRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F++N + I S ++K GD I +REK++ I+ +L+ W+ +D
Sbjct: 119 LVRHGHFVLNGRKATIPSIQVKAGDTIVLREKSRNVAAISEALDAVVRRGIPQWLELDRD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
G+ K+ P R + + I + L
Sbjct: 179 AFTGLAKTVPVREDISTPIQEQL 201
>gi|413959407|ref|ZP_11398643.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. SJ98]
gi|413940364|gb|EKS72327.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. SJ98]
Length = 325
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 109/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NP
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPE 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTEAAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|254449317|ref|ZP_05062762.1| ribosomal protein S4 [gamma proteobacterium HTCC5015]
gi|198261076|gb|EDY85376.1| ribosomal protein S4 [gamma proteobacterium HTCC5015]
Length = 173
Score = 190 bits (482), Expect = 2e-45, Method: Composition-based stats.
Identities = 94/167 (56%), Positives = 125/167 (74%), Gaps = 1/167 (0%)
Query: 34 LDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILK 93
++ PGQ G R SDYG Q REKQKV+R+YG+LE+QFR Y+ AR KG TGE +LK
Sbjct: 1 MERTPGQAQARRG-RLSDYGLQLREKQKVRRIYGVLERQFRNYYKTAARQKGSTGENLLK 59
Query: 94 LLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQ 153
LLE R DNVVYRMG+ STR+EARQL+SH+A LVN +VN+ASY++K GD + VRE++ +Q
Sbjct: 60 LLECRLDNVVYRMGYGSTRAEARQLVSHKAILVNGAVVNVASYQVKAGDEVKVREQSAQQ 119
Query: 154 TRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
TRI +S+EL++ P W+ VD KK+ GVFK+ P+RS+ +IN+ L
Sbjct: 120 TRIQDSMELAQQRGPVEWMEVDTKKLSGVFKNVPDRSDLPAEINESL 166
>gi|330815274|ref|YP_004358979.1| DNA-directed RNA polymerase subunit alpha [Burkholderia gladioli
BSR3]
gi|327367667|gb|AEA59023.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia gladioli
BSR3]
Length = 325
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ +V A DIEL D E++NP+
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGIVTAGDIELAHDCEVINPD 124
Query: 319 HIIAHLS 325
H+IAHL+
Sbjct: 125 HVIAHLT 131
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|73542838|ref|YP_297358.1| DNA-directed RNA polymerase subunit alpha [Ralstonia eutropha
JMP134]
gi|90110863|sp|Q46WG9.1|RPOA_RALEJ RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|72120251|gb|AAZ62514.1| DNA-directed RNA polymerase subunit alpha [Ralstonia eutropha
JMP134]
Length = 326
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 112/127 (88%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ +V A+DIEL D+E++NPN
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKDGEGIVTAADIELPHDVEIINPN 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/100 (81%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSL-EKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T E SS ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAASSRAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|114330597|ref|YP_746819.1| 30S ribosomal protein S4 [Nitrosomonas eutropha C91]
gi|122314409|sp|Q0AIH2.1|RS4_NITEC RecName: Full=30S ribosomal protein S4
gi|114307611|gb|ABI58854.1| SSU ribosomal protein S4P [Nitrosomonas eutropha C91]
Length = 208
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 134/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR I PK + CRREG LFLK + KC ++ R PGQHG+ +R SDY Q R
Sbjct: 1 MARNINPKCRQCRREGEKLFLKGDK-CFSDKCPIERRNYPPGQHGQ-RKTRLSDYAVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFR + R KG TGE +LKLLESR DNV Y MGF ++R+EARQ
Sbjct: 59 EKQKIRRIYGLLENQFRNVYKRADRQKGITGENLLKLLESRLDNVAYNMGFGASRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
+I H L+N K NI S I PGD I V E AK RI +S+EL++ + SW+ VD
Sbjct: 119 IIRHDCILLNGKKANIPSQLIGPGDQIEVAEHAKSYLRIKSSIELAKRRSIPSWLEVDFD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++G++K++P+RS+ ++ IN+ L
Sbjct: 179 NLKGLYKNKPDRSDLSSTINESL 201
>gi|258512643|ref|YP_003186077.1| 30S ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479369|gb|ACV59688.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 208
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 129/201 (64%), Gaps = 5/201 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREGI L+LK R KC +D RP GQHG+ RT++YG Q R
Sbjct: 1 MARYTGPVCRLCRREGIKLYLKGER-CFSEKCAVDKRPYAPGQHGQ-GRKRTTEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R YG+LE QF RY+ E AR +G TGE +L+LLESR DNVVYR+GF+++R+EARQ
Sbjct: 59 EKQKARRYYGVLENQFERYYEEAARRRGVTGETLLQLLESRLDNVVYRLGFAASRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H VN + V+I S+ +K GD++SVREK++ R+ EL T +W+ +DA+
Sbjct: 119 LVRHGHIQVNGRRVDIPSFLVKEGDVVSVREKSRDNARLKELAELIPSRTIPAWLELDAE 178
Query: 178 KMEGVFKSEPNRSEFANDIND 198
P R E + +
Sbjct: 179 NWTAKVLRRPARDEIDAPVQE 199
>gi|91785439|ref|YP_560645.1| DNA-directed RNA polymerase subunit alpha [Burkholderia xenovorans
LB400]
gi|170695707|ref|ZP_02886849.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia graminis
C4D1M]
gi|187925590|ref|YP_001897232.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
phytofirmans PsJN]
gi|323527576|ref|YP_004229729.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp.
CCGE1001]
gi|385207768|ref|ZP_10034636.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp. Ch1-1]
gi|407714963|ref|YP_006835528.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
phenoliruptrix BR3459a]
gi|119366671|sp|Q13TJ6.1|RPOA_BURXL RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|238689619|sp|B2T725.1|RPOA_BURPP RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|91689393|gb|ABE32593.1| DNA-directed RNA polymerase subunit alpha [Burkholderia xenovorans
LB400]
gi|170139312|gb|EDT07498.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia graminis
C4D1M]
gi|187716784|gb|ACD18008.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia
phytofirmans PsJN]
gi|323384578|gb|ADX56669.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp.
CCGE1001]
gi|385180106|gb|EIF29382.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp. Ch1-1]
gi|407237147|gb|AFT87346.1| DNA-directed RNA polymerase subunit alpha [Burkholderia
phenoliruptrix BR3459a]
Length = 325
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG +HAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NP+
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTEATAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|169335656|ref|ZP_02862849.1| hypothetical protein ANASTE_02076 [Anaerofustis stercorihominis DSM
17244]
gi|169258394|gb|EDS72360.1| ribosomal protein S4 [Anaerofustis stercorihominis DSM 17244]
Length = 208
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY +LCRRE LFLK +R D KC + RP GQHG GS+ S+YG Q R
Sbjct: 1 MARYTEASCRLCRRENEKLFLKGSRCYSD-KCAFNRRPTAPGQHGS-KGSKMSEYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LEKQFR YF + R G GE ++ LLESR DNVVYRMGF+S+R EARQ
Sbjct: 59 EKQKVKRIYGVLEKQFRLYFDKAERKPGAAGENLISLLESRLDNVVYRMGFASSRKEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H FLV+ K VNI S+ +K G +I V++ ++K ++ E++E P ++ VD +
Sbjct: 119 LVRHNHFLVDGKKVNIPSFSVKEGQVIKVKDDSRKSSKFKEIAEMNETKVPAAYTQVDME 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
KMEG + P +++ I D L
Sbjct: 179 KMEGKMIAAPTKADIEIPIEDHL 201
>gi|312795804|ref|YP_004028726.1| DNA-directed RNA polymerase subunit alpha [Burkholderia rhizoxinica
HKI 454]
gi|312167579|emb|CBW74582.1| DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) [Burkholderia
rhizoxinica HKI 454]
Length = 325
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 109/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V +LG NHAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HE
Sbjct: 5 LLKPKIIAVDSLGDNHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV+A DIE+ D E++NP
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVIAGDIEVPHDCEVINPE 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETTAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|238025958|ref|YP_002910189.1| DNA-directed RNA polymerase subunit alpha [Burkholderia glumae
BGR1]
gi|237875152|gb|ACR27485.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia glumae
BGR1]
Length = 325
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ +V A DIEL D E++NP+
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGIVTAGDIELAHDCEVINPD 124
Query: 319 HIIAHLS 325
H+IAHL+
Sbjct: 125 HVIAHLT 131
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTETAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|239618238|ref|YP_002941560.1| 30S ribosomal protein S4 [Kosmotoga olearia TBF 19.5.1]
gi|259495284|sp|C5CGH5.1|RS4_KOSOT RecName: Full=30S ribosomal protein S4
gi|239507069|gb|ACR80556.1| ribosomal protein S4 [Kosmotoga olearia TBF 19.5.1]
Length = 208
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 124/194 (63%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKC---KLDLRPGQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG L+LK R KC K PGQHG + + + YG Q R
Sbjct: 1 MARYTGPVCKLCRREGFKLYLK-GERCFTPKCAVVKRPFAPGQHGSAT-RKLTQYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ +KRMYG+LEKQFRRYF +R +TG ++K+LESR DNVVYRMGF+S+R +ARQ
Sbjct: 59 SKQALKRMYGVLEKQFRRYFEIASRKSEETGTALIKVLESRLDNVVYRMGFASSRKQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH LVN + VN ASY ++PGDII ++EK+K + + ++E S + T W+ +D
Sbjct: 119 LVSHGHVLVNGRKVNKASYSVRPGDIIEIKEKSKAKVPVKEAIEASRNRTTPPWLEIDFD 178
Query: 178 KMEGVFKSEPNRSE 191
G F P R E
Sbjct: 179 AARGTFVRFPEREE 192
>gi|337286842|ref|YP_004626315.1| 30S ribosomal protein S4 [Thermodesulfatator indicus DSM 15286]
gi|335359670|gb|AEH45351.1| ribosomal protein S4 [Thermodesulfatator indicus DSM 15286]
Length = 210
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 135/204 (66%), Gaps = 5/204 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRIS-GSRTSDYGYQF 56
MA+Y GP+ +LCRREG+ LFLK R D KC + R PGQHG+ ++ SDYG +
Sbjct: 1 MAKYTGPRCRLCRREGMKLFLKGDRCYTD-KCAFERRSYPPGQHGQAQIRAKRSDYGIRL 59
Query: 57 REKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEAR 116
REKQKVKR+YG+ EKQF +YF R+KG+TG +L+LLE R DNVVYR+GF+S+R +AR
Sbjct: 60 REKQKVKRIYGVSEKQFAKYFDRADRMKGQTGHNLLQLLERRLDNVVYRLGFASSRMQAR 119
Query: 117 QLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDA 176
Q+++H F VN + V+I SY +KPG++I ++EK ++ RI +LE + W+ +DA
Sbjct: 120 QMVAHGLFKVNGRNVDIPSYLVKPGEVIELKEKYRQNARIQENLEAAVRRGIPQWLELDA 179
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + I + L
Sbjct: 180 DNFKGTVKALPTREDITMPIQEQL 203
>gi|339478212|ref|YP_004707031.1| 30S ribosomal protein S4 [Candidatus Tremblaya princeps PCIT]
gi|409191119|ref|YP_006884248.1| 30S ribosomal protein S4 [Candidatus Tremblaya princeps PCVAL]
gi|338172234|gb|AEI75163.1| 30S ribosomal protein S4 [Candidatus Tremblaya princeps PCIT]
gi|340536445|gb|AEK38443.1| 30S ribosomal protein S4 [Candidatus Tremblaya princeps PCVAL]
Length = 202
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 122/198 (61%), Gaps = 7/198 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GP+ +L RREG+DL LKS R + KC+ RPGQ R G R S Y QFR KQ
Sbjct: 1 MARYLGPRQRLSRREGVDLLLKSCARPFEDKCRAGARPGQCHRHQGHRPSTYCMQFRGKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
++KR YG+LE+QF Y A + G TG +L+ LESR DNVVYRMGF +TR ARQL+S
Sbjct: 61 RIKRYYGVLERQFSAYVRRAASVPGNTGSRLLQALESRLDNVVYRMGFGTTRPAARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELS-EHSTPFSWITVDAKKM 179
HR VN +V+ SY ++ GD+++VR + S L +H P++W+ V
Sbjct: 121 HRHVTVNATVVHTPSYAVRAGDVVAVRSA------LCRSAALPMQHPCPYAWLHVRWDIA 174
Query: 180 EGVFKSEPNRSEFANDIN 197
EGVF P+ +E + ++
Sbjct: 175 EGVFMRPPSGAELPHGLH 192
>gi|186477561|ref|YP_001859031.1| DNA-directed RNA polymerase subunit alpha [Burkholderia phymatum
STM815]
gi|209521360|ref|ZP_03270073.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp. H160]
gi|390576171|ref|ZP_10256244.1| DNA-directed RNA polymerase subunit alpha [Burkholderia terrae
BS001]
gi|420246438|ref|ZP_14749880.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp. BT03]
gi|238691303|sp|B2JI39.1|RPOA_BURP8 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|184194020|gb|ACC71985.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia phymatum
STM815]
gi|209498180|gb|EDZ98322.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp. H160]
gi|389931852|gb|EIM93907.1| DNA-directed RNA polymerase subunit alpha [Burkholderia terrae
BS001]
gi|398074541|gb|EJL65682.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp. BT03]
Length = 325
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NP+
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTEAAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|295677906|ref|YP_003606430.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp.
CCGE1002]
gi|295437749|gb|ADG16919.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp.
CCGE1002]
Length = 325
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E++NP+
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTEAAAETPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|392423921|ref|YP_006464915.1| SSU ribosomal protein S4P [Desulfosporosinus acidiphilus SJ4]
gi|391353884|gb|AFM39583.1| SSU ribosomal protein S4P [Desulfosporosinus acidiphilus SJ4]
Length = 209
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 132/204 (64%), Gaps = 6/204 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ LFLK R KC +D R PGQHG+ G + ++YG Q R
Sbjct: 1 MARYTGPVCRLCRREGMKLFLK-GERCYTGKCAIDRRAYAPGQHGQARGKKPTEYGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YG++EKQF+ YF E AR KG TGE +L LLE R DNV++ +GF+++R EARQ
Sbjct: 60 EKQKARRLYGVMEKQFQHYFDEAARRKGVTGENLLVLLERRLDNVIFHLGFATSRPEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE-LSEHSTPFSWITVDA 176
L++H F VN + V+I SY ++ G++I+V+E +K R+ LE L + P W+++DA
Sbjct: 120 LVNHGHFTVNGRRVDIPSYSVRVGEVIAVKEGSKSSPRMKQILENLGTRTVP-GWLSLDA 178
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
G + P R + I + L
Sbjct: 179 NAAAGTVVALPTREDIQLPIQEHL 202
>gi|386019375|ref|YP_005937399.1| 30S ribosomal protein S4 [Pseudomonas stutzeri DSM 4166]
gi|327479347|gb|AEA82657.1| 30S ribosomal protein S4 [Pseudomonas stutzeri DSM 4166]
Length = 167
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 116/160 (72%), Gaps = 1/160 (0%)
Query: 41 HGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFD 100
HG+ G R SDYG Q REKQKV+R+YG+LE+QF Y+ E A KG TGE +L+LLE R D
Sbjct: 2 HGQRRG-RLSDYGTQLREKQKVRRIYGVLERQFSGYYKEAASRKGATGENLLQLLECRLD 60
Query: 101 NVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSL 160
NVVYRMGF STR+E+RQL+SH++ VN + VNI SY++K GD+++VREK + Q RIA +L
Sbjct: 61 NVVYRMGFGSTRAESRQLVSHKSITVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQAL 120
Query: 161 ELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
EL W+ VDA K GVFK+ P RS+ + DIN+ L
Sbjct: 121 ELCAQRGRVEWVEVDADKKSGVFKNVPARSDLSADINENL 160
>gi|374368999|ref|ZP_09627039.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus basilensis
OR16]
gi|373099456|gb|EHP40537.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus basilensis
OR16]
Length = 326
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 111/127 (87%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKEGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/100 (81%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSS-LEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T E SS ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESSAEAASSRTPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|377821865|ref|YP_004978236.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. YI23]
gi|357936700|gb|AET90259.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp. YI23]
Length = 325
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 109/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ +V A DIEL D E++NP
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGLVTAGDIELAHDCEVINPE 124
Query: 319 HIIAHLS 325
H++AHLS
Sbjct: 125 HVVAHLS 131
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTEAAAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|421747399|ref|ZP_16185114.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus necator
HPC(L)]
gi|409773982|gb|EKN55676.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus necator
HPC(L)]
Length = 326
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 111/127 (87%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKEGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/100 (81%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSL-EKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T E SS ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESSAEAASSRAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|94312222|ref|YP_585432.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus
metallidurans CH34]
gi|430805774|ref|ZP_19432889.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus sp. HMR-1]
gi|119366711|sp|Q1LI63.1|RPOA_RALME RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|93356074|gb|ABF10163.1| RNA polymerase, alpha subunit [Cupriavidus metallidurans CH34]
gi|429501933|gb|ELA00257.1| DNA-directed RNA polymerase subunit alpha [Cupriavidus sp. HMR-1]
Length = 326
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 111/127 (87%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKDGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/100 (81%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSL-EKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T E SS ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAASSRAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|262197163|ref|YP_003268372.1| 30S ribosomal protein S4 [Haliangium ochraceum DSM 14365]
gi|262080510|gb|ACY16479.1| ribosomal protein S4 [Haliangium ochraceum DSM 14365]
Length = 209
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 130/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE + LFLK R KC D R PGQHG+ + SDYG Q R
Sbjct: 1 MARYTGPVCRLCRREEMKLFLK-GERCYTEKCGYDRRSYPPGQHGQSRRRKRSDYGEQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YGI E+QFR Y+ +R+KG TGE +++LLE R DNVVYRMGF+ +EARQ
Sbjct: 60 EKQKVKRIYGIAERQFRGYYHRASRMKGVTGENLIQLLERRLDNVVYRMGFACDHAEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H FL++ + VNI SY I+ G + V+EK++ TRI SL E WI ++
Sbjct: 120 LVLHGHFLIDGRRVNIPSYLIRSGQTVQVKEKSRTVTRIVESLGAVERRGVPVWIDLEKD 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P+RS+ + DI + L
Sbjct: 180 AFKGSVKALPSRSDVSLDIREQL 202
>gi|297618356|ref|YP_003703515.1| 30S ribosomal protein S4 [Syntrophothermus lipocalidus DSM 12680]
gi|297146193|gb|ADI02950.1| ribosomal protein S4 [Syntrophothermus lipocalidus DSM 12680]
Length = 209
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RY GP +LCRREGI L+LK A R KC L+ +P GQHGR + S+YG Q R
Sbjct: 1 MGRYTGPACRLCRREGIKLYLK-AERCYSEKCALERKPYIPGQHGRGRRGKPSEYGSQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK KR+YGILE+QFR YF + R G TGE +L LLE R DNVVYR+GF+ +R EARQ
Sbjct: 60 EKQKAKRIYGILERQFRNYFEKAERQPGITGENLLALLERRLDNVVYRLGFAGSRPEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
LI+H FL+N + VNI S +K GD+I V+EK+ + + + + TP W+ V+A
Sbjct: 120 LITHGHFLLNGRKVNIPSILVKVGDVIQVKEKSMESAKFKELQAQAAYKTPPEWLEVNAD 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I++ L
Sbjct: 180 NLSGRVLALPRRDQIDAPIDEHL 202
>gi|442806027|ref|YP_007374176.1| 30S ribosomal protein S4 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741877|gb|AGC69566.1| 30S ribosomal protein S4 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 208
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +LCRREG LFLK R +KC ++ R PG HG+ + S+YG Q R
Sbjct: 1 MARYTGASCRLCRREGQKLFLK-GERCYSNKCAIERRSYAPGMHGQ-QRKKLSEYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK KR YG+LE QFR+Y+ R KG TGEI+L++LESR DNVVYRMGF ++R+EARQ
Sbjct: 59 EKQKAKRFYGVLESQFRKYYEMAIRRKGITGEILLQILESRLDNVVYRMGFGTSRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
LI+H FLVN K VNI SY ++ GD++ V EK++K R LE++ T W+ VD +
Sbjct: 119 LITHGHFLVNGKRVNIPSYLVREGDVVEVAEKSRKLERFKEILEVTGGRTVPKWLEVDHE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G + P R + I + L
Sbjct: 179 NMKGRVVTLPAREDIDLPIEEHL 201
>gi|94266329|ref|ZP_01290031.1| Ribosomal protein S4:RNA-binding S4 [delta proteobacterium MLMS-1]
gi|93453083|gb|EAT03562.1| Ribosomal protein S4:RNA-binding S4 [delta proteobacterium MLMS-1]
Length = 209
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G + CRRE + LFLK R KC + R PGQHG+ + SDY Q R
Sbjct: 1 MARYTGAVCRQCRREKLKLFLKGDR-CYSDKCSFERRSYAPGQHGQARLRKVSDYAMQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QF RYF+E R +G TGE +L+LLE R DNV+YR+GF+S+R++AR
Sbjct: 60 EKQKVKRMYGMLEGQFHRYFVEAERQRGVTGENLLRLLECRLDNVIYRLGFASSRNQARH 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H FL+N VNI S ++K GD+++VREK++++ I SL +W+ ++ +
Sbjct: 120 LVRHNHFLLNGHKVNIPSLQVKVGDVLTVREKSRQKGMIQESLAAMARRGVPTWLELNQE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
G KS P R E I + L
Sbjct: 180 AFSGTVKSAPERQELTMPIQEQL 202
>gi|350545192|ref|ZP_08914696.1| DNA-directed RNA polymerase alpha subunit [Candidatus Burkholderia
kirkii UZHbot1]
gi|350526994|emb|CCD39051.1| DNA-directed RNA polymerase alpha subunit [Candidatus Burkholderia
kirkii UZHbot1]
Length = 320
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/126 (67%), Positives = 107/126 (84%)
Query: 200 LKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEY 259
+KP+II V++LG NHAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HEY
Sbjct: 1 MKPKIIAVESLGENHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVVHEY 60
Query: 260 SSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNH 319
S+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A DIEL D E+ NP H
Sbjct: 61 STLDGVQEDVVNLLLNLKGVVFKLHNRDEGTVTLRKEGEGVVTAGDIELAHDCEVTNPEH 120
Query: 320 IIAHLS 325
+IAHLS
Sbjct: 121 VIAHLS 126
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/99 (79%), Positives = 87/99 (87%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++ PILLRPVDDLELTVRSANCLKA
Sbjct: 205 EEAIRQSARILVDQLSVFAALEGTEAAAEAPSRAPQIAPILLRPVDDLELTVRSANCLKA 264
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 265 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 303
>gi|297569396|ref|YP_003690740.1| 30S ribosomal protein S4 [Desulfurivibrio alkaliphilus AHT2]
gi|296925311|gb|ADH86121.1| ribosomal protein S4 [Desulfurivibrio alkaliphilus AHT2]
Length = 209
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 129/203 (63%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G + CRRE + LFLK R KC + R PGQHG+ + SDY Q R
Sbjct: 1 MARYTGAVCRQCRREKLKLFLKGDR-CYSDKCSFERRSYAPGQHGQARLRKVSDYALQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF E R +G TGEI+L++LESR DNVVYR+GF+++R++AR
Sbjct: 60 EKQKVKRIYGMLEDQFRRYFDEAERRRGVTGEILLQMLESRLDNVVYRLGFAASRNQARH 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H FL+N + VNI S ++K GD+I++REK+++ I SL +W+ ++
Sbjct: 120 LVRHNHFLLNGRKVNIPSLQVKVGDVITLREKSREVEAIKESLAAVARRGVPTWLELNQD 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
G KS P+R E I + L
Sbjct: 180 AFSGTVKSAPDRQELTMPIQEQL 202
>gi|150020872|ref|YP_001306226.1| 30S ribosomal protein S4 [Thermosipho melanesiensis BI429]
gi|172048669|sp|A6LLP0.1|RS4_THEM4 RecName: Full=30S ribosomal protein S4
gi|149793393|gb|ABR30841.1| RNA-binding S4 domain protein [Thermosipho melanesiensis BI429]
Length = 209
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 127/194 (65%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP+ KLCRREG+ L+LK R KC D RP G HGR + + YG Q R
Sbjct: 1 MARYTGPQCKLCRREGMKLYLK-GERCFTDKCAFDRRPFAPGDHGR-EKKKLTQYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ +KR+YG+LE QFRRY+ + A+ G T E ++ +E R DNVVYR+GF+ R+ ARQ
Sbjct: 59 AKQTMKRIYGVLEAQFRRYYEKAAKKSGDTRENLVVQVERRLDNVVYRLGFAVNRTTARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH FLVN K VNI SY+++PGD+I VREK+K I N++EL++ W++VD +
Sbjct: 119 LVSHGHFLVNGKKVNIPSYQVRPGDVIEVREKSKDILPIKNAIELNKDKNRMPWLSVDFE 178
Query: 178 KMEGVFKSEPNRSE 191
+GV++ P E
Sbjct: 179 NYKGVYERHPKLEE 192
>gi|307731229|ref|YP_003908453.1| DNA-directed RNA polymerase subunit alpha [Burkholderia sp.
CCGE1003]
gi|307585764|gb|ADN59162.1| DNA-directed RNA polymerase, alpha subunit [Burkholderia sp.
CCGE1003]
Length = 325
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG +HAKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HE
Sbjct: 5 LLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED+++++LNLKGV+ KL+NRD + L+K G+ VV A +IEL D E++NP+
Sbjct: 65 YSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGEIELAHDCEVINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 88/99 (88%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIRQSAR+LVDQL+VFAALE T E S ++DPILLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTEATAEAPSRAPQIDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|257095015|ref|YP_003168656.1| DNA-directed RNA polymerase subunit alpha [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047539|gb|ACV36727.1| DNA-directed RNA polymerase, alpha subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 324
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 109/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
L KPRIIDV++L HA+V+MEPFERGYG+TLGNALRR+LLSSM G APTEV I G LHE
Sbjct: 6 LFKPRIIDVQSLSPVHARVVMEPFERGYGHTLGNALRRILLSSMPGYAPTEVSIDGVLHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED++DI+LNLKGV+ KL+NR+ +L+L+K GK VV A+DIE+ D+E++NP
Sbjct: 66 YSTIDGVQEDVVDILLNLKGVVFKLHNREEVVLHLRKEGKGVVRAADIEVSHDVEIINPE 125
Query: 319 HIIAHLS 325
HIIAHLS
Sbjct: 126 HIIAHLS 132
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 87/99 (87%), Gaps = 1/99 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIR +AR+L++QL+VFA L T + E +++ VDP+LLRPVDDLELTVRSANCLKA
Sbjct: 210 EEAIRTAARILMEQLSVFADLAGTAMPIEYQKTVQ-VDPLLLRPVDDLELTVRSANCLKA 268
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 269 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 307
>gi|218289979|ref|ZP_03494156.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius LAA1]
gi|218239964|gb|EED07151.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius LAA1]
Length = 208
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 95/201 (47%), Positives = 128/201 (63%), Gaps = 5/201 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREGI L+LK R KC +D RP GQHG+ RT++YG Q R
Sbjct: 1 MARYTGPVCRLCRREGIKLYLKGER-CFSEKCAVDKRPYAPGQHGQ-GRKRTTEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R YG+LE QF RY+ E AR +G TGE +L+LLESR DNVVYR+GF+++R+EARQ
Sbjct: 59 EKQKARRYYGVLENQFERYYEEAARRRGVTGETLLQLLESRLDNVVYRLGFAASRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H VN + V+I S+ +K GD++SVREK++ R+ EL T +W+ +D +
Sbjct: 119 LVRHGHIQVNGRRVDIPSFLVKEGDVVSVREKSRDNARLKELAELIPSRTIPAWLELDVE 178
Query: 178 KMEGVFKSEPNRSEFANDIND 198
P R E + +
Sbjct: 179 NWTAKVLRRPARDEIDAPVQE 199
>gi|295694865|ref|YP_003588103.1| 30S ribosomal protein S4 [Kyrpidia tusciae DSM 2912]
gi|295410467|gb|ADG04959.1| ribosomal protein S4 [Kyrpidia tusciae DSM 2912]
Length = 208
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ L+LK R KC +D R PGQHG+ + S+YG Q R
Sbjct: 1 MARYTGPVCRLCRREGVKLYLK-GERCYSDKCAIDRRGYAPGQHGQ-GRRKQSEYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R YG+LEKQFR Y+ E R G TGE++L+LLE R DNVVYR+G++++R+EARQ
Sbjct: 59 EKQKARRTYGVLEKQFRHYYEEANRQHGVTGEVLLQLLERRLDNVVYRLGYAASRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN + V+I SY++K GD+++VREK+ + R+ +E ++ T +W+ D+
Sbjct: 119 LVRHGHFTVNGRRVDIPSYQLKEGDVVAVREKSLESPRLKELVETADSRTVPAWLDRDSA 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
G P R E + + +
Sbjct: 179 TASGKVLRIPTRDEIDTPVQEQM 201
>gi|30248442|ref|NP_840512.1| 30S ribosomal protein S4 [Nitrosomonas europaea ATCC 19718]
gi|41017978|sp|Q82X70.1|RS4A_NITEU RecName: Full=30S ribosomal protein S4 A
gi|30138328|emb|CAD84336.1| Ribosomal protein S4:S4 domain [Nitrosomonas europaea ATCC 19718]
Length = 208
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 133/203 (65%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MAR I PK + CRREG LFLK + KC ++ R PGQHG+ R SDY Q R
Sbjct: 1 MARNINPKCRQCRREGEKLFLK-GDKCFSDKCPIERRNYPPGQHGQ-KKVRLSDYAVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFR + + KG TG+ +L+LLESR DNV Y MGF S+RSEARQ
Sbjct: 59 EKQKIRRIYGLLENQFRNVYKRADKQKGVTGDNLLQLLESRLDNVAYNMGFGSSRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H L+N K NI S+ ++PGD+I + E AK RI S+E ++ + SW+ VD
Sbjct: 119 IVRHNCVLLNGKRANIPSHLVEPGDLIEIAEHAKSYLRIKASIEAAKRRSIPSWLEVDFD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
++G++KS+P RS+ ++ IN+ L
Sbjct: 179 NLKGLYKSKPERSDLSSTINESL 201
>gi|71905988|ref|YP_283575.1| 50S ribosomal protein L17 [Dechloromonas aromatica RCB]
gi|119365865|sp|Q47J76.1|RL17_DECAR RecName: Full=50S ribosomal protein L17
gi|71845609|gb|AAZ45105.1| LSU ribosomal protein L17P [Dechloromonas aromatica RCB]
Length = 132
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 103/118 (87%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR+G RKLNRTSSHRL MLRNMT+SLL++E IKTT+PKAKELRRVVEPI+TL K TL
Sbjct: 1 MRHRNGLRKLNRTSSHRLAMLRNMTVSLLKHEAIKTTVPKAKELRRVVEPIITLGKNPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF LRDR I +KLF+E+GPRY GGY+RILK GFRVGDNAPMAF+ELL++
Sbjct: 61 ANKRLAFDRLRDRDIVVKLFAEIGPRYATRPGGYLRILKCGFRVGDNAPMAFVELLDR 118
>gi|336322778|ref|YP_004602745.1| 30S ribosomal protein S4 [Flexistipes sinusarabici DSM 4947]
gi|336106359|gb|AEI14177.1| ribosomal protein S4 [Flexistipes sinusarabici DSM 4947]
Length = 208
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 133/203 (65%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY KLCRREG L+LK R KC + + PGQHG++ + SDYG Q R
Sbjct: 1 MARYTEAVCKLCRREGQKLYLK-GERCFKDKCGFEKKGYPPGQHGQMR-KKISDYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFR YF + + +G TGE +L++LE R DNVV+R GF+S+R+EARQ
Sbjct: 59 EKQKVKRIYGVLEAQFRVYFAKAVQREGITGENLLQILERRLDNVVFRSGFASSRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++H F+VN K +NI S++++PGD++ ++EK++K RI SLE +E W+TVD
Sbjct: 119 FVNHNHFVVNGKKINIPSFQVRPGDVVELKEKSRKIPRINESLETAEGRGIPEWVTVDKS 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ P R + A DI++ L
Sbjct: 179 GYKSTVNRLPARDDIAYDIHEHL 201
>gi|253682663|ref|ZP_04863460.1| ribosomal protein S4 [Clostridium botulinum D str. 1873]
gi|416350149|ref|ZP_11680791.1| 30S ribosomal protein S4 [Clostridium botulinum C str. Stockholm]
gi|253562375|gb|EES91827.1| ribosomal protein S4 [Clostridium botulinum D str. 1873]
gi|338196386|gb|EGO88583.1| 30S ribosomal protein S4 [Clostridium botulinum C str. Stockholm]
Length = 206
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 135/203 (66%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARYIG +LCRREG+ LFLK R D KC R PGQHG+ + S+YG Q R
Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTD-KCAFARRSYAPGQHGQ-GRKKLSNYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YGILE QFR+Y+ + ++G TGE +LKLLE R DNVVYR+GF S+RSEARQ
Sbjct: 59 EKQKARRIYGILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYRLGFGSSRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K V+IAS+K+ GD+I+VREK++ + E + + P +W+ + +
Sbjct: 119 LVTHGHFLVNGKKVDIASFKVSAGDVITVREKSRGTEKFKTFAE-NPKTLP-AWLQGNVE 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG +EP R++ +N+ L
Sbjct: 177 NFEGKVIAEPTRTDIDVPVNETL 199
>gi|421498499|ref|ZP_15945601.1| 30S ribosomal protein S4 [Aeromonas media WS]
gi|407182473|gb|EKE56428.1| 30S ribosomal protein S4 [Aeromonas media WS]
Length = 154
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 112/146 (76%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQKV+R+YG+LEKQFR Y+ + AR KG TGE +L+LLE R DNVVYRMGF +TR+E
Sbjct: 2 QLREKQKVRRIYGVLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
+RQL+SH+A +VN ++VN+ S+++ P D+I VREKAKKQ RI SLE++ +W+ V
Sbjct: 62 SRQLVSHKAIMVNGRVVNVPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
DA KMEG FK P RS+ + DIN+ L
Sbjct: 122 DAAKMEGAFKRLPERSDLSADINEQL 147
>gi|206890097|ref|YP_002249221.1| 30S ribosomal protein S4 [Thermodesulfovibrio yellowstonii DSM
11347]
gi|226695094|sp|B5YG23.1|RS4_THEYD RecName: Full=30S ribosomal protein S4
gi|206742035|gb|ACI21092.1| ribosomal protein S4 [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 208
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +LCRRE + +FLK R KC + R PGQHG G + SDYG Q R
Sbjct: 1 MARYTGSLCRLCRRESMKMFLKGTR-CYTEKCAFERRKYPPGQHGHNRG-KLSDYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG++E+QF+ YF + ++KG TGE +LKLLE R DNV+YRMGF+ R +ARQ
Sbjct: 59 EKQKVKRIYGVMERQFKNYFEKATKMKGVTGENLLKLLERRLDNVIYRMGFAMNRRQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN K V+I SY ++PGDII + + K+ I SL L+E W+ V+A+
Sbjct: 119 LVRHGYFTVNGKKVDIPSYLVRPGDIIEIVQSGKELEIIKESLALAEQRGFPVWLEVNAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+M+G F P R E + + L
Sbjct: 179 EMKGKFVRLPEREEMQLPVQEQL 201
>gi|258513667|ref|YP_003189889.1| 30S ribosomal protein S4 [Desulfotomaculum acetoxidans DSM 771]
gi|257777372|gb|ACV61266.1| ribosomal protein S4 [Desulfotomaculum acetoxidans DSM 771]
Length = 208
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP+ KLCRREG+ L+LK R KC +D R PGQHG+ S + S+YG Q R
Sbjct: 1 MARYTGPQCKLCRREGLKLYLKGDR-CYSDKCAIDRRSYPPGQHGQ-SRRKVSEYGTQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG+LEKQFR YF R +G TGE +L+LLE R DNV++RMG ++R EARQ
Sbjct: 59 EKQKVRRIYGVLEKQFRTYFDRADRQQGITGENLLRLLERRMDNVIFRMGLGASRVEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H F VN + V+I S+ +K GD+I +RE +K RI +E + T +W+ D+
Sbjct: 119 LVTHGHFTVNGRKVDIPSFLVKVGDVIGIREGSKDSPRIKELMERAAEKTRPAWLEYDSD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G + P R E + + L
Sbjct: 179 AAQGRIVALPRRDEIDAPVQEHL 201
>gi|406999960|gb|EKE17428.1| 50S ribosomal protein L17 [uncultured bacterium]
Length = 132
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 104/118 (88%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR G RKLNRTSSHRL MLRNMT+SLLR+E IKTT+PKAKELRRVVEP++TL + TL
Sbjct: 1 MRHRSGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTVPKAKELRRVVEPMITLGRTPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF LRDR+I +KLF+E+GPRY + GGY+RILK GFRVGDNAPMAF+EL+++
Sbjct: 61 ANKRLAFDRLRDREIVVKLFAEIGPRYAQRPGGYLRILKCGFRVGDNAPMAFVELVDR 118
>gi|291286338|ref|YP_003503154.1| 30S ribosomal protein S4 [Denitrovibrio acetiphilus DSM 12809]
gi|290883498|gb|ADD67198.1| ribosomal protein S4 [Denitrovibrio acetiphilus DSM 12809]
Length = 208
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY G KLCRREG+ LFLK R KC + +P GQHG+ + SD+G Q R
Sbjct: 1 MARYTGAVCKLCRREGMKLFLK-GERCYKDKCGFEKKPYPPGQHGQ-GRKKISDFGTQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LEKQFRRYF + R+ G TGE +L+LLE R DN+VYR GF+ +R EARQ
Sbjct: 59 EKQKVKRLYGVLEKQFRRYFDKATRMDGITGENLLQLLERRLDNIVYRAGFAGSRKEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H FL++ K V+I S+ +KPG +I VREK++ +R + L+ +E W+ ++
Sbjct: 119 MVKHSHFLIDGKKVDIPSFLVKPGMVIEVREKSQNVSRFKDCLDTAEGRGVSDWLALEKS 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ V P R + DI + L
Sbjct: 179 NFKAVVNRLPERDDIGYDIQEHL 201
>gi|393778222|ref|ZP_10366502.1| DNA-directed RNA polymerase subunit alpha [Ralstonia sp. PBA]
gi|392714776|gb|EIZ02370.1| DNA-directed RNA polymerase subunit alpha [Ralstonia sp. PBA]
Length = 325
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 112/127 (88%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V++LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM G APTEV I+G +HE
Sbjct: 4 LLKPKIIAVESLGEHHAKVVMEPFERGYGHTLGNALRRVLLSSMNGFAPTEVTIAGVVHE 63
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NR+ ++L+K G+ VV A+DIEL D+E++NP+
Sbjct: 64 YSTIDGVQEDVVNLLLNLKGVVFKLHNREEVTVSLRKDGEGVVTAADIELPHDVEIINPD 123
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 124 HVIAHLS 130
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSS-LEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T E +S ++DPILLRPVDDLELTVRSANCLK
Sbjct: 209 EEAIRQSARILVDQLSVFAALEGTETAGEAAASRAPQIDPILLRPVDDLELTVRSANCLK 268
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 269 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 308
>gi|322418390|ref|YP_004197613.1| 30S ribosomal protein S4 [Geobacter sp. M18]
gi|320124777|gb|ADW12337.1| ribosomal protein S4 [Geobacter sp. M18]
Length = 208
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG +LFLK R D KC + R PGQHG+ + SDYG Q R
Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTD-KCAIKRRSYPPGQHGQ-GRIKVSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE QFR YF R+KG TGE +L LLE R DNVVYR+GF+++R EARQ
Sbjct: 59 EKQKVRRIYGILENQFRGYFESADRMKGVTGENLLFLLERRLDNVVYRLGFATSRDEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N + NI S ++K GD+I +REK++K I SLE W+ +D
Sbjct: 119 LVRHSHFTLNGRKANIPSIQVKAGDVIQLREKSRKIAVITESLEAVVRRGIPQWLELDKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + I + L
Sbjct: 179 AFKGTVKTSPVREDITMPIQEQL 201
>gi|331268441|ref|YP_004394933.1| 30S ribosomal protein S4 [Clostridium botulinum BKT015925]
gi|329124991|gb|AEB74936.1| ribosomal protein S4 [Clostridium botulinum BKT015925]
Length = 206
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 135/203 (66%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARYIG +LCRREG+ LFLK R D KC R PGQHG+ + S+YG Q R
Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTD-KCAFARRSYAPGQHGQ-GRKKLSNYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YGILE QFR+Y+ + ++G TGE +L+LLE R DNVVYR+GF S+RSEARQ
Sbjct: 59 EKQKARRIYGILEAQFRKYYEKAETMRGITGENLLRLLEMRLDNVVYRLGFGSSRSEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K V+IAS+K+ GD+I+VREK++ + E + + P +W+ + +
Sbjct: 119 LVTHGHFLVNGKKVDIASFKVSAGDVITVREKSRGTEKFKTFAE-NPKTLP-AWLQGNVE 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG +EP R++ +N+ L
Sbjct: 177 NFEGKVIAEPTRTDIDVPVNETL 199
>gi|119029437|gb|ABL59934.1| ribosomal protein S4 [uncultured bacterium]
Length = 210
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 130/204 (63%), Gaps = 5/204 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MAR +GP+ +L RRE DL L S D+K K + PGQHG S+ SDYG QFR KQ
Sbjct: 1 MARDLGPRGRLERREQHDLSLFSGVSPRDNKIKTAVVPGQHG-TRRSKLSDYGKQFRAKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KR+YG+LE+QFR YF ++ G TGE +L+LLE R DN+VYR GF+ TR EARQL+S
Sbjct: 60 LAKRIYGVLERQFRNYFRYASKRNGPTGENLLRLLECRLDNIVYRSGFARTRKEARQLVS 119
Query: 121 HRAFLVNK----KIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDA 176
H+ +VN ++VNI SY+IKP D I VREK + Q R+ +L+L++ T WI D
Sbjct: 120 HKGIVVNDGKNIRVVNIPSYQIKPEDEIFVREKCRDQGRVREALDLAQKRTTPEWIETDH 179
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
+GV K P R E +I +LL
Sbjct: 180 LNFKGVIKRLPERDEMPLEIAELL 203
>gi|337288337|ref|YP_004627809.1| 30S ribosomal protein S4 [Thermodesulfobacterium sp. OPB45]
gi|334902075|gb|AEH22881.1| ribosomal protein S4 [Thermodesulfobacterium geofontis OPF15]
Length = 210
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 132/202 (65%), Gaps = 5/202 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHG-RISGSRTSDYGYQF 56
MARY GP+ +LCRREG+ LFLK R D KC + R PGQHG + + SDYG +
Sbjct: 1 MARYTGPRCRLCRREGVKLFLKGERCYTD-KCAFERRSYPPGQHGPQQVRVKLSDYGIRL 59
Query: 57 REKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEAR 116
REKQKVKR+YGI EKQ R+Y+ ++ G++G +L+LLE R DNVVYR+GF+ +R++AR
Sbjct: 60 REKQKVKRIYGISEKQMRKYYEMATKMPGQSGHNLLQLLERRLDNVVYRLGFAVSRAQAR 119
Query: 117 QLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDA 176
Q ++H F VN K V+I SY +KPGD+I ++EK + +I SLE SW+ +DA
Sbjct: 120 QYVNHGFFKVNGKNVDIPSYLVKPGDVIELKEKYRNNPQILESLETVARRGIPSWLELDA 179
Query: 177 KKMEGVFKSEPNRSEFANDIND 198
+ +GV KS P R + I +
Sbjct: 180 ENFKGVVKSLPTREDITMPIQE 201
>gi|404492317|ref|YP_006716423.1| 30S ribosomal protein S4 [Pelobacter carbinolicus DSM 2380]
gi|90101701|sp|Q3A6M1.1|RS4_PELCD RecName: Full=30S ribosomal protein S4
gi|77544424|gb|ABA87986.1| ribosomal protein S4 [Pelobacter carbinolicus DSM 2380]
Length = 209
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 130/197 (65%), Gaps = 5/197 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE + LFLK R D KC L+ R PGQHG+ ++ SDYG Q R
Sbjct: 1 MARYTGPVCRLCRRETMKLFLKGDRCYTD-KCALERRNYAPGQHGQ-GRTKVSDYGTQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQ++KR YG+LEKQFR YF + +KG TGE +L LLE R D+ VYR+GF+S+R+E R
Sbjct: 59 EKQRMKRTYGLLEKQFRAYFDKADSMKGVTGENLLVLLERRLDSAVYRLGFASSRTEGRA 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ FLVN + VNI SY ++P D+I +REK++K TRI ++L+ SW+ +D +
Sbjct: 119 LVRQGHFLVNGRKVNIPSYVMRPNDVIELREKSRKITRINDALDGVMRRGLPSWVELDRE 178
Query: 178 KMEGVFKSEPNRSEFAN 194
+G FK+ P R E
Sbjct: 179 AFKGTFKTLPVREEMTT 195
>gi|187930338|ref|YP_001900825.1| DNA-directed RNA polymerase subunit alpha [Ralstonia pickettii 12J]
gi|241664506|ref|YP_002982866.1| DNA-directed RNA polymerase subunit alpha [Ralstonia pickettii 12D]
gi|309782860|ref|ZP_07677580.1| DNA-directed RNA polymerase, alpha subunit [Ralstonia sp.
5_7_47FAA]
gi|404397556|ref|ZP_10989346.1| DNA-directed RNA polymerase subunit alpha [Ralstonia sp. 5_2_56FAA]
gi|238691836|sp|B2UEJ3.1|RPOA_RALPJ RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|187727228|gb|ACD28393.1| DNA-directed RNA polymerase, alpha subunit [Ralstonia pickettii
12J]
gi|240866533|gb|ACS64194.1| DNA-directed RNA polymerase, alpha subunit [Ralstonia pickettii
12D]
gi|308918284|gb|EFP63961.1| DNA-directed RNA polymerase, alpha subunit [Ralstonia sp.
5_7_47FAA]
gi|348612673|gb|EGY62287.1| DNA-directed RNA polymerase subunit alpha [Ralstonia sp. 5_2_56FAA]
Length = 326
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 111/127 (87%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKEGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IA+LS
Sbjct: 125 HVIANLS 131
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T + + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAAAARAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|220930992|ref|YP_002507900.1| 30S ribosomal protein S4 [Halothermothrix orenii H 168]
gi|254764592|sp|B8D0T6.1|RS4_HALOH RecName: Full=30S ribosomal protein S4
gi|219992302|gb|ACL68905.1| ribosomal protein S4 [Halothermothrix orenii H 168]
Length = 208
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG L+LK R D KC +D R PG+HGR ++ ++YG Q R
Sbjct: 1 MARYKGPVCRLCRREGEKLYLKGQRCYTD-KCAIDRRSYPPGEHGR-RRNKPTEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YGILEKQF+RYF ++ G TGE L +LE R DNVVYR+G +++R+EARQ
Sbjct: 59 EKQKVKRIYGILEKQFKRYFDMAEKMPGVTGENFLSILERRLDNVVYRLGLATSRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
+ H LVN + VNI SY + GD+ISV++ ++K R E +E TP W++V+ +
Sbjct: 119 FVLHGHILVNGRKVNIPSYLVDEGDVISVKDSSRKSKRFKEVFEFNEDLTPPKWLSVNLE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K EG + P R + + + L
Sbjct: 179 KAEGKVVAMPTREDIDYPVEEHL 201
>gi|381191124|ref|ZP_09898635.1| 30S ribosomal protein S4 [Thermus sp. RL]
gi|384431845|ref|YP_005641205.1| 30S ribosomal protein S4 [Thermus thermophilus SG0.5JP17-16]
gi|333967313|gb|AEG34078.1| ribosomal protein S4 [Thermus thermophilus SG0.5JP17-16]
gi|380450913|gb|EIA38526.1| 30S ribosomal protein S4 [Thermus sp. RL]
Length = 209
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 131/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E+QFR F E +R KG TG + L LLESR DNVVYR+GF+ +R +ARQ
Sbjct: 60 EKQKLRRIYGISERQFRNLFEEASRKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H VN + V++ SY+++PGD I+V EK++ I +LE + W+++D +
Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 GMKGKFLRLPDREDLALPVNEQL 202
>gi|406910947|gb|EKD50850.1| hypothetical protein ACD_62C00417G0028 [uncultured bacterium]
Length = 208
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY K CRREG+ LF+K R KC L+ R PGQHG+ ++S+Y Q R
Sbjct: 1 MARYRESVCKQCRREGLKLFIKGDR-CYSDKCALERREYAPGQHGQ-GRKKSSEYATQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LEKQFR+ F E R KG TGE +++LLE+R DN+VYR GF+++R+EAR
Sbjct: 59 EKQKIRRIYGVLEKQFRKIFWEAERRKGITGENLVQLLEARLDNMVYRFGFANSRNEARL 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ R F VN KIV I SY KPGD I VREK++K RI S++ + W+ +D K
Sbjct: 119 LVGQRHFTVNGKIVTIPSYVTKPGDEICVREKSQKAVRIQESMKAVQRRGVPEWLALDEK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
KM G K P R + +N+ L
Sbjct: 179 KMVGKIKMLPMRQQITMPMNEQL 201
>gi|397905077|ref|ZP_10505949.1| SSU ribosomal protein S4p (S9e) [Caloramator australicus RC3]
gi|397161872|emb|CCJ33283.1| SSU ribosomal protein S4p (S9e) [Caloramator australicus RC3]
Length = 206
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 133/203 (65%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG+ L+LK R D KC + RP GQHG + + ++YG Q R
Sbjct: 1 MARYTGPSCKLCRREGVKLYLKGDRCYSD-KCAIVRRPYAPGQHGH-NKKKLTNYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK KR+YG+LE QFR+Y+ E R KG GE +L+LLE R DNVV+R+GF+ +R+EARQ
Sbjct: 59 EKQKAKRIYGVLESQFRKYYEEAERQKGIAGENLLRLLEMRLDNVVFRLGFAGSRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN K V I SY+++ D+I+V+E +K + SL+ +TP W+TVD +
Sbjct: 119 LVRHGHFTVNGKKVTIPSYQVRVNDVIAVKEGSKNLEKF-KSLQEVATTTP-KWLTVDKE 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
KMEG + P R + +N+ L
Sbjct: 177 KMEGQVTALPQREDIDIPVNETL 199
>gi|83748175|ref|ZP_00945202.1| DNA-directed RNA polymerase alpha chain [Ralstonia solanacearum
UW551]
gi|300702806|ref|YP_003744407.1| RNA polymerase subunit alpha; RNA polymerase alpha chain family
[Ralstonia solanacearum CFBP2957]
gi|83725143|gb|EAP72294.1| DNA-directed RNA polymerase alpha chain [Ralstonia solanacearum
UW551]
gi|299070468|emb|CBJ41763.1| RNA polymerase, alpha subunit; RNA polymerase alpha chain family
[Ralstonia solanacearum CFBP2957]
Length = 326
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKEGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IA LS
Sbjct: 125 HVIASLS 131
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T + + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAAAARAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|421890474|ref|ZP_16321333.1| RNA polymerase, alpha subunit; RNA polymerase alpha chain family
[Ralstonia solanacearum K60-1]
gi|378964185|emb|CCF98081.1| RNA polymerase, alpha subunit; RNA polymerase alpha chain family
[Ralstonia solanacearum K60-1]
Length = 326
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKEGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IA LS
Sbjct: 125 HVIASLS 131
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T + + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAAAARAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|152989997|ref|YP_001355719.1| 30S ribosomal protein S4 [Nitratiruptor sp. SB155-2]
gi|172048726|sp|A6Q1K3.1|RS4_NITSB RecName: Full=30S ribosomal protein S4
gi|151421858|dbj|BAF69362.1| 30S ribosomal protein S4 [Nitratiruptor sp. SB155-2]
Length = 208
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP K+ RR G+ L LK RR L K L+ RP GQHG+ S+ S+YG Q R
Sbjct: 1 MARYRGPVEKIERRLGVSLALKGERR-LAGKSALEKRPYPPGQHGQ-RRSKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F E R++G TGE ++KLLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVAEKQFRNLFKEANRMEGNTGENLIKLLERRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K VNI S+++KPG I +REK+K +I SLEL+ + W+ VD +
Sbjct: 119 LVNHGHVLVDGKRVNIPSFRVKPGQKIEIREKSKNNPQIQRSLELTNQTGIVPWVDVDKE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G+F P R E + + L
Sbjct: 179 KVFGIFTRIPEREEIDIPVEERL 201
>gi|218294781|ref|ZP_03495635.1| RNA-binding S4 domain protein [Thermus aquaticus Y51MC23]
gi|218244689|gb|EED11213.1| RNA-binding S4 domain protein [Thermus aquaticus Y51MC23]
Length = 209
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 132/203 (65%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQRRARRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E QFR F E +R KG TG ++L LLESR DNVVYR+GF+ +R +ARQ
Sbjct: 60 EKQKLRRIYGISETQFRNLFEEASRKKGVTGTVLLGLLESRLDNVVYRLGFAQSRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H VN + V++ +Y++KPGD I++ E+++ T I +LE + W+++D +
Sbjct: 120 MVRHGHITVNGRRVDLPAYRVKPGDEIAIAERSRNLTFIRENLEAMKGRKVGPWLSLDVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 GMKGKFLRLPDREDLALPVNEQL 202
>gi|386332173|ref|YP_006028342.1| DNA-directed RNA polymerase subunit alpha [Ralstonia solanacearum
Po82]
gi|334194621|gb|AEG67806.1| DNA-directed RNA polymerase subunit alpha [Ralstonia solanacearum
Po82]
Length = 326
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKDGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IA LS
Sbjct: 125 HVIASLS 131
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T + + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAAAARAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|17547712|ref|NP_521114.1| DNA-directed RNA polymerase subunit alpha [Ralstonia solanacearum
GMI1000]
gi|20139458|sp|Q8XV38.1|RPOA_RALSO RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|17430017|emb|CAD16702.1| probable dna-directed rna polymerase alpha chain (rnap
alphasubunit) (transcriptase alpha chain) (rna
polymerase alpha subunit) protein [Ralstonia
solanacearum GMI1000]
gi|299065441|emb|CBJ36610.1| RNA polymerase, alpha subunit; RNA polymerase alpha chain family
[Ralstonia solanacearum CMR15]
Length = 326
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 110/127 (86%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKEGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IA LS
Sbjct: 125 HVIASLS 131
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T + + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAAAARAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|34499615|ref|NP_903830.1| DNA-directed RNA polymerase subunit alpha [Chromobacterium
violaceum ATCC 12472]
gi|41688632|sp|Q7NQH7.1|RPOA_CHRVO RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|34105466|gb|AAQ61821.1| DNA-directed RNA polymerase (alpha subunit) [Chromobacterium
violaceum ATCC 12472]
Length = 327
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/132 (62%), Positives = 109/132 (82%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N ++ LKPR+IDV+ + + HA+V MEPFERGY +TLGN+LRR+LLSSM G APTEV I+
Sbjct: 3 NSASEFLKPRLIDVQPVSATHARVSMEPFERGYAHTLGNSLRRILLSSMPGYAPTEVTIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+L+GV+ED++DI+LNLKGV+LKL+ RD +L LKK G+ VLASDIEL D+E
Sbjct: 63 GVLHEYSALDGVREDVVDILLNLKGVVLKLHGRDSVVLTLKKEGEGAVLASDIELPHDVE 122
Query: 314 LVNPNHIIAHLS 325
++NP H+I H+S
Sbjct: 123 VINPEHVICHIS 134
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
E+A+R +AR+L+DQL++FA L+ T V++ ++ + +DPILLRPVDDLELTVRSANCLKA
Sbjct: 212 EQAVRNAARILMDQLSIFADLQGTAVEEVVEKA-PPIDPILLRPVDDLELTVRSANCLKA 270
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 271 ENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 309
>gi|224827042|ref|ZP_03700139.1| DNA-directed RNA polymerase, alpha subunit [Pseudogulbenkiania
ferrooxidans 2002]
gi|347538215|ref|YP_004845639.1| DNA-directed RNA polymerase subunit alpha [Pseudogulbenkiania sp.
NH8B]
gi|224600708|gb|EEG06894.1| DNA-directed RNA polymerase, alpha subunit [Pseudogulbenkiania
ferrooxidans 2002]
gi|345641392|dbj|BAK75225.1| DNA-directed RNA polymerase, alpha subunit [Pseudogulbenkiania sp.
NH8B]
Length = 327
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/132 (62%), Positives = 109/132 (82%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N ++ LKPR+IDV+ + + HA+V MEPFERGY +TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSASEFLKPRLIDVQPVSATHARVSMEPFERGYAHTLGNALRRILLSSMPGFAPTEVTIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+L+GV+ED++DI+LNLKGV+LKL+ RD +L LKK G+ VLA DIEL D+E
Sbjct: 63 GVLHEYSALDGVREDVVDILLNLKGVVLKLHGRDSVVLTLKKEGEGAVLAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLS 325
++NP+H+I HL+
Sbjct: 123 VINPDHVICHLA 134
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
E+A+R +AR+L+DQL++FA L+ T V++ ++ + +DPILLRPVDDLELTVRSANCLKA
Sbjct: 212 EQAVRNAARILMDQLSIFADLQGTAVEEVVEKA-PPIDPILLRPVDDLELTVRSANCLKA 270
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 271 ENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 309
>gi|320352938|ref|YP_004194277.1| 30S ribosomal protein S4 [Desulfobulbus propionicus DSM 2032]
gi|320121440|gb|ADW16986.1| SSU ribosomal protein S4P [Desulfobulbus propionicus DSM 2032]
Length = 209
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +LCRRE + +FLK R KC + R PGQHG+ + SDY Q R
Sbjct: 1 MARYTGASCRLCRRENLKMFLKGDR-CYSDKCAFERRSFAPGQHGQNRFRKVSDYAVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVK+MYG+LE QFRRYF R KG TGE +L +LE R DNV+YR GF+S+R +ARQ
Sbjct: 60 EKQKVKQMYGMLEAQFRRYFERAERAKGVTGETLLIMLERRLDNVLYRSGFASSRDQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H F +N K VNI S+++ GDII+++EK +K ++ ++LE + SW+ +D
Sbjct: 120 MVRHNLFTLNGKKVNIPSHQVNAGDIIALKEKYQKSEQVIDNLEGAVRRGLPSWLELDQA 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K K+ PNR E I + L
Sbjct: 180 KFHCAVKALPNREEITMPIQEQL 202
>gi|329907623|ref|ZP_08274693.1| SSU ribosomal protein S4p (S9e) [Oxalobacteraceae bacterium
IMCC9480]
gi|327546928|gb|EGF31837.1| SSU ribosomal protein S4p (S9e) [Oxalobacteraceae bacterium
IMCC9480]
Length = 139
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/132 (65%), Positives = 104/132 (78%)
Query: 69 LEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNK 128
+E+QFRRYF E R KG TGE +LKLLE R DNV+YRMGF STR+EARQL+SH+AF VN
Sbjct: 1 MERQFRRYFAEADRRKGNTGETLLKLLEGRLDNVIYRMGFGSTRAEARQLVSHKAFTVNG 60
Query: 129 KIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPN 188
+VNIASY++K GD+I VREKAKKQ RI +L L+E SW+ VDAKKMEG FKS P+
Sbjct: 61 IVVNIASYQVKAGDVIVVREKAKKQVRIVEALSLAEQIGMPSWVAVDAKKMEGTFKSVPD 120
Query: 189 RSEFANDINDLL 200
RSE A+D+N+ L
Sbjct: 121 RSEIAHDVNESL 132
>gi|222056680|ref|YP_002539042.1| 30S ribosomal protein S4 [Geobacter daltonii FRC-32]
gi|254764590|sp|B9M6F3.1|RS4_GEOSF RecName: Full=30S ribosomal protein S4
gi|221565969|gb|ACM21941.1| ribosomal protein S4 [Geobacter daltonii FRC-32]
Length = 208
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE +LFLK R D KC + R PGQHG+ S+TSDYG Q R
Sbjct: 1 MARYTGPSCRLCRRENTELFLKGERCYTD-KCAIKRRNYPPGQHGQ-GRSKTSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE QFR YF RLKG TGE +L LLE R DN+VYR+GF+S+R EARQ
Sbjct: 59 EKQKVRRIYGILENQFRGYFERADRLKGVTGENLLFLLERRLDNIVYRLGFASSRIEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N K V I S ++K GD + +REK++K I SLE W+ +D
Sbjct: 119 LVRHGHFTLNGKKVTIPSIQVKTGDTVELREKSRKVASINESLEAVVRRGIPQWLELDKG 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + I + L
Sbjct: 179 AFKGSVKTLPVREDITMPIQEQL 201
>gi|313680488|ref|YP_004058227.1| 30S ribosomal protein S4 [Oceanithermus profundus DSM 14977]
gi|313153203|gb|ADR37054.1| SSU ribosomal protein S4P [Oceanithermus profundus DSM 14977]
Length = 209
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 127/203 (62%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGDR-CYSPKCAIERRPYAPGQHGQRRARRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI EKQFR F E ++ KG TG + L+LLESR DNVVYR+G +S+R +ARQ
Sbjct: 60 EKQKMRRIYGISEKQFRNLFEEASKKKGVTGTVFLRLLESRLDNVVYRLGIASSRKQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H V + V + SY+++PGD+I+V E KK I + E ++ W+ D +
Sbjct: 120 LVRHGHIAVGGRKVTVPSYRVRPGDVIAVTEAGKKIGAIQANAEAAKGRKTGPWLEFDPE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
KM G F P R + A +N+ L
Sbjct: 180 KMVGKFLRLPEREDLALPVNEQL 202
>gi|345874159|ref|ZP_08825975.1| DNA-directed RNA polymerase, alpha subunit [Neisseria weaveri LMG
5135]
gi|417957268|ref|ZP_12600193.1| DNA-directed RNA polymerase, alpha subunit [Neisseria weaveri ATCC
51223]
gi|343968672|gb|EGV36897.1| DNA-directed RNA polymerase, alpha subunit [Neisseria weaveri ATCC
51223]
gi|343970804|gb|EGV38975.1| DNA-directed RNA polymerase, alpha subunit [Neisseria weaveri LMG
5135]
Length = 328
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 107/134 (79%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N ++ LKPR IDV TL + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV+IS
Sbjct: 3 NSTSEFLKPRQIDVDTLSTTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVVIS 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++DI+LNLKGV+ KL+ R L LKK G V+A DIEL D+E
Sbjct: 63 GVLHEYSTVDGVQEDVVDILLNLKGVVFKLHGRSQVQLTLKKSGSGPVVAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP+H+I HLSDN
Sbjct: 123 IINPDHLICHLSDN 136
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLKGTPVE-EVEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|456062413|ref|YP_007501383.1| DNA-directed RNA polymerase subunit alpha [beta proteobacterium CB]
gi|455439710|gb|AGG32648.1| DNA-directed RNA polymerase subunit alpha [beta proteobacterium CB]
Length = 326
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 109/129 (84%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+II V+ L +N AKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 TNLLKPKIISVEALTANQAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVAIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYS+L+GVQED+++++LNLKG++ KL +RD +NL+K G VV A DI+L D+E++N
Sbjct: 63 HEYSTLDGVQEDVVNLLLNLKGIVFKLQSRDEVTINLRKEGPGVVTAKDIDLPHDVEIIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHLS
Sbjct: 123 PDHVIAHLS 131
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEK-VDPILLRPVDDLELTVRSANCLK 386
EEAIRQ+A +LVDQL VFAALE++ V +L S VDP+L+RPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQAATILVDQLVVFAALESSEVSGDLAPSRSSMVDPMLMRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIK++LA+RG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKDVLAARG 309
>gi|326390634|ref|ZP_08212189.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus JW 200]
gi|345018507|ref|YP_004820860.1| 30S ribosomal protein S4 [Thermoanaerobacter wiegelii Rt8.B1]
gi|392939549|ref|ZP_10305193.1| ribosomal protein S4, bacterial/organelle type [Thermoanaerobacter
siderophilus SR4]
gi|325993312|gb|EGD51749.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus JW 200]
gi|344033850|gb|AEM79576.1| ribosomal protein S4 [Thermoanaerobacter wiegelii Rt8.B1]
gi|392291299|gb|EIV99742.1| ribosomal protein S4, bacterial/organelle type [Thermoanaerobacter
siderophilus SR4]
Length = 206
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 133/203 (65%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK + D KC + R PGQHG+ + ++YG Q R
Sbjct: 1 MGRYIGPTCRLCRREGMKLYLKGDKCYTD-KCPVARRGYAPGQHGQ-EKKKLTNYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+KR YG+LE+QF RY+ E R+KG TGE +L+LLE R DNVVYR+GF+++R +ARQ
Sbjct: 59 EKQKLKRYYGVLERQFVRYYEEAERMKGITGENLLQLLERRLDNVVYRLGFAASRPQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH VN K V+I S+ +KPGD+ISVREK++ I N+LE+S + W+ ++
Sbjct: 119 LVSHGHIEVNGKKVDIPSFLVKPGDVISVREKSRSMELIKNNLEVSRNVP--DWLELNKD 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG S P R I + L
Sbjct: 177 AFEGRVVSLPRREHIDLPIQEHL 199
>gi|374339831|ref|YP_005096567.1| 30S ribosomal protein S4 [Marinitoga piezophila KA3]
gi|372101365|gb|AEX85269.1| ribosomal protein S4, bacterial/organelle type [Marinitoga
piezophila KA3]
Length = 209
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 126/196 (64%), Gaps = 6/196 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARYIG KLCRREG L+LK R D KC + RP GQHG+ + + YG Q R
Sbjct: 1 MARYIGSLCKLCRREGFKLYLKGERCYTD-KCAIAKRPYAPGQHGK-QAKKPTQYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ +KR+YG+LE+QFRRYF E +R +G TGE ++++LE+R DNVVY+MGF+ R ARQ
Sbjct: 59 SKQALKRIYGVLERQFRRYFEEASRKEGNTGENLMRVLETRLDNVVYQMGFAVNRRTARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHST-PFSWITVDA 176
L+ H FLVN K V+I SY+++PGD+I V+EK++ I +EL++ + WI VD
Sbjct: 119 LVRHGHFLVNGKKVDIPSYRVRPGDVIEVKEKSRSALPIKQGIELAQKANRKLDWIEVDY 178
Query: 177 KKMEGVFKSEPNRSEF 192
+G F P E
Sbjct: 179 NAFKGTFLRLPTLDEM 194
>gi|435853001|ref|YP_007314320.1| ribosomal protein S4, bacterial/organelle type [Halobacteroides
halobius DSM 5150]
gi|433669412|gb|AGB40227.1| ribosomal protein S4, bacterial/organelle type [Halobacteroides
halobius DSM 5150]
Length = 209
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 125/203 (61%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG LFLK R D KC ++ RP G+HG+ + S+YG Q R
Sbjct: 1 MARYTGPVCKLCRREGEKLFLKGERCHSD-KCAIERRPYAPGEHGQGRRGKLSEYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R YG+LE QFRRYF E G TGE L+LLE R DNVVYR+GF+++R+EARQ
Sbjct: 60 EKQKVRRAYGVLENQFRRYFEEAEHEPGITGENFLQLLERRLDNVVYRLGFATSRNEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
+ H LVN ++I SY++K D I V E +K R+ E +E SW+ VD
Sbjct: 120 FVRHGHILVNGSRLDIPSYRVKTDDKIEVAEDSKSMKRMKEIAEYNEEKELPSWLQVDFN 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+EG +EP R E I + L
Sbjct: 180 KLEGTVLTEPVRDEIDLPIQEQL 202
>gi|291613263|ref|YP_003523420.1| ribosomal protein L17 [Sideroxydans lithotrophicus ES-1]
gi|291583375|gb|ADE11033.1| ribosomal protein L17 [Sideroxydans lithotrophicus ES-1]
Length = 129
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 100/121 (82%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR G RKLNRTSSHRL MLRNMT+SLLR+E+IKTTLPKAKELRRV EPILTL K +L
Sbjct: 1 MRHRLGLRKLNRTSSHRLAMLRNMTVSLLRHEVIKTTLPKAKELRRVAEPILTLGKNPSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTK 549
+N+RLAF+ LRDR I KLF ELGPRY NGGY RILK GFR GDNAPMA +ELL++
Sbjct: 61 ANRRLAFARLRDRDIVTKLFDELGPRYAARNGGYSRILKFGFRKGDNAPMALVELLDRPA 120
Query: 550 N 550
+
Sbjct: 121 D 121
>gi|444913347|ref|ZP_21233499.1| SSU ribosomal protein S4p (S9e) [Cystobacter fuscus DSM 2262]
gi|444715967|gb|ELW56827.1| SSU ribosomal protein S4p (S9e) [Cystobacter fuscus DSM 2262]
Length = 208
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + ++LK R D KC ++ RP GQHG+ + S YG Q R
Sbjct: 1 MARYTASSCRICRRENLKMYLKGDRCYTD-KCAIERRPYPPGQHGQ-GRVKFSGYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QFR Y+ + KGKTGE +L+ LE R DNVV+RMGF+ TR+EARQ
Sbjct: 59 EKQKVKRMYGLLESQFRGYYHRASAAKGKTGENLLQQLELRLDNVVFRMGFADTRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N K VNI S+ +KPG I V EK++K RIA +LE + WI +D K
Sbjct: 119 LVRHGHFTINGKRVNIPSFAVKPGTTIEVAEKSRKILRIAEALETVDRRGVPQWIDLDKK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ K+ PNR + I + L
Sbjct: 179 NFKATVKTPPNREDLTMPIQEQL 201
>gi|402847026|ref|ZP_10895333.1| ribosomal protein S4 [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267068|gb|EJU16467.1| ribosomal protein S4 [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 201
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 128/200 (64%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK+K+ R+ G +F A + L K + PGQHG +TS+YG Q +EKQ
Sbjct: 1 MARYTGPKSKIARKLGAPIF--GADKVLSKK---NYPPGQHGNNRRRKTSEYGIQLKEKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LE+QFR F + R KG TGE++L+LLESR DNVVYR+G + TR+ ARQL+S
Sbjct: 56 KAKYTYGVLERQFRNLFEKAQRTKGVTGEVLLQLLESRLDNVVYRLGIAKTRAAARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR V+ ++VNI SY +KPG ++ VREKAK I +SL HS+ +SW+ + +
Sbjct: 116 HRHITVDGQVVNIPSYTLKPGQVVGVREKAKSLEVITDSLAGRSHSS-YSWLEWNQASLS 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F S P R + +I + L
Sbjct: 175 GKFLSAPQREDIPEEIKEQL 194
>gi|393778221|ref|ZP_10366501.1| 50S ribosomal protein L17 [Ralstonia sp. PBA]
gi|392714775|gb|EIZ02369.1| 50S ribosomal protein L17 [Ralstonia sp. PBA]
Length = 131
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 104/118 (88%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SLLR+E+IKTTLPKAKELR+VVEP++TLSK +T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLLRHELIKTTLPKAKELRKVVEPLITLSKNDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR++ KLF+ELGPR+ GGY RILK GFRVGDNAPMA +ELL++
Sbjct: 61 ANRRLAFNRLRDREMVTKLFTELGPRFATRPGGYTRILKFGFRVGDNAPMALVELLDR 118
>gi|429742289|ref|ZP_19275932.1| ribosomal protein S4 [Porphyromonas catoniae F0037]
gi|429157335|gb|EKX99935.1| ribosomal protein S4 [Porphyromonas catoniae F0037]
Length = 201
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 128/200 (64%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK+K+ R+ G +F A + L K + PGQHG +TS+YG Q +EKQ
Sbjct: 1 MARYTGPKSKIARKLGAPIF--GADKVLSKK---NYPPGQHGNSRRRKTSEYGIQLKEKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LE+QFR F + R KG TGE++L+LLESR DNVVYR+G + TR+ ARQL+S
Sbjct: 56 KAKYTYGVLERQFRNLFEKAQRTKGVTGEVLLQLLESRLDNVVYRLGIAKTRAAARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR V+ ++VNI SY +KPG ++ VREKAK I +SL HS+ +SW+ + +
Sbjct: 116 HRHITVDGQVVNIPSYTLKPGQVVGVREKAKSLEVITDSLAGRSHSS-YSWLEWNQASLS 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F S P R + +I + L
Sbjct: 175 GKFLSAPAREDIPEEIKEQL 194
>gi|337281267|ref|YP_004620739.1| RNA polymerase subunit alpha [Ramlibacter tataouinensis TTB310]
gi|334732344|gb|AEG94720.1| RNA polymerase alpha subunit [Ramlibacter tataouinensis TTB310]
Length = 329
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 109/129 (84%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+ I+V+ LG+N AKV +EPFERGYG+TLGNALRRVLLSSM+G A TEV I+G L
Sbjct: 3 TNLLKPKAINVEQLGTNRAKVTLEPFERGYGHTLGNALRRVLLSSMVGYAATEVTIAGVL 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSS++GVQED++ I+LNLKGV+ KL+NRD L+L+K G+ VV A+DI+ D+E++N
Sbjct: 63 HEYSSIDGVQEDVVSILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTAADIQTPHDVEIIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHLS
Sbjct: 123 PDHVIAHLS 131
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 11/106 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE + PV++ S ++ DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGSELAAFDAPVQR----SSQQFDPILLRPVDELELTVR 265
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 311
>gi|46199603|ref|YP_005270.1| 30S ribosomal protein S4 [Thermus thermophilus HB27]
gi|55981634|ref|YP_144931.1| 30S ribosomal protein S4 [Thermus thermophilus HB8]
gi|386359830|ref|YP_006058075.1| 30S ribosomal protein S4 [Thermus thermophilus JL-18]
gi|7404455|sp|P80373.3|RS4_THET8 RecName: Full=30S ribosomal protein S4
gi|50401228|sp|P62664.2|RS4_THET2 RecName: Full=30S ribosomal protein S4
gi|10120567|pdb|1FKA|D Chain D, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
gi|13399795|pdb|1HNW|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
gi|13399817|pdb|1HNX|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
gi|13399839|pdb|1HNZ|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
gi|14278059|pdb|1IBK|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
gi|14278080|pdb|1IBL|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
gi|14278104|pdb|1IBM|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
gi|58177403|pdb|1XMO|D Chain D, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
gi|58177426|pdb|1XMQ|D Chain D, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
gi|58177467|pdb|1XNQ|D Chain D, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
gi|58177490|pdb|1XNR|D Chain D, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
gi|66361057|pdb|1YL4|G Chain G, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
gi|88192239|pdb|2B64|D Chain D, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
gi|88192302|pdb|2B9M|D Chain D, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
gi|88192358|pdb|2B9O|D Chain D, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
gi|116667657|pdb|2HHH|D Chain D, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
gi|116668200|pdb|2J00|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
gi|116668261|pdb|2J02|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
gi|119389715|pdb|2HGI|G Chain G, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
gi|119389772|pdb|2HGP|G Chain G, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
gi|119389828|pdb|2HGR|G Chain G, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
gi|149242711|pdb|2OW8|EE Chain e, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
gi|149243621|pdb|2UU9|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
gi|149243648|pdb|2UUA|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
gi|149243675|pdb|2UUB|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
gi|149243702|pdb|2UUC|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
gi|149243841|pdb|2UXC|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
gi|157836411|pdb|2UXB|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
gi|157836488|pdb|2V46|D Chain D, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
gi|157836544|pdb|2V48|D Chain D, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
gi|158430903|pdb|2UXD|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
gi|160285942|pdb|2QNH|EE Chain e, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
gi|186972852|pdb|2VQE|D Chain D, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
gi|186972875|pdb|2VQF|D Chain D, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
gi|187609258|pdb|2ZKQ|DD Chain d, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
gi|209156499|pdb|3D5A|D Chain D, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
gi|209156555|pdb|3D5C|D Chain D, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
gi|218766776|pdb|3F1E|D Chain D, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
gi|218766832|pdb|3F1G|D Chain D, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
gi|226887377|pdb|2WDG|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
gi|226887402|pdb|2WDH|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
gi|226887491|pdb|2WDK|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
gi|226887548|pdb|2WDM|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
gi|237823532|pdb|2WH1|D Chain D, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
gi|237823591|pdb|2WH3|D Chain D, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
gi|260099989|pdb|3HUW|D Chain D, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
gi|260100045|pdb|3HUY|D Chain D, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
gi|261824487|pdb|2WRI|D Chain D, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
gi|261824549|pdb|2WRK|D Chain D, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
gi|261824611|pdb|2WRN|D Chain D, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
gi|261824670|pdb|2WRQ|D Chain D, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
gi|281307170|pdb|3KIQ|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
gi|281307228|pdb|3KIS|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
gi|281307286|pdb|3KIU|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
gi|281307344|pdb|3KIX|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
gi|288965607|pdb|3KNH|D Chain D, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
gi|289526685|pdb|3KNJ|D Chain D, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
gi|289526710|pdb|3KNL|D Chain D, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
gi|289526735|pdb|3KNN|D Chain D, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
gi|294979507|pdb|3I8G|G Chain G, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
gi|294979532|pdb|3I8H|G Chain G, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
gi|294979591|pdb|3I9B|G Chain G, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
gi|294979645|pdb|3I9D|G Chain G, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
gi|295982078|pdb|2X9R|D Chain D, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
gi|295982137|pdb|2X9T|D Chain D, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
gi|307567965|pdb|2XFZ|D Chain D, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
gi|307568023|pdb|2XG1|D Chain D, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
gi|307776615|pdb|3OTO|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
gi|309320238|pdb|3OGE|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
gi|309320259|pdb|3OGY|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
gi|309320340|pdb|3OHC|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
gi|309320361|pdb|3OHD|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
gi|309320442|pdb|3OHY|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320493|pdb|3OI0|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320544|pdb|3OI2|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320595|pdb|3OI4|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|312207676|pdb|2XQD|D Chain D, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
gi|313754002|pdb|2XSY|D Chain D, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
gi|313754117|pdb|2XUY|D Chain D, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
gi|325533405|pdb|2Y0U|D Chain D, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
gi|325533464|pdb|2Y0W|D Chain D, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
gi|325533523|pdb|2Y0Y|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
gi|325533582|pdb|2Y10|D Chain D, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
gi|325533641|pdb|2Y12|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
gi|325533700|pdb|2Y14|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
gi|325533759|pdb|2Y16|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
gi|325533818|pdb|2Y18|D Chain D, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
gi|347948798|pdb|3ZVO|D Chain D, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
gi|374074266|pdb|3T1H|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
gi|374074291|pdb|3T1Y|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
gi|374074508|pdb|3UXS|D Chain D, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|374074529|pdb|3UXT|D Chain D, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
gi|381353091|pdb|4ABR|D Chain D, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
gi|381353195|pdb|4DH9|D Chain D, Crystal Structure Of Yaej Bound To The 70s Ribosome
gi|381353250|pdb|4DHB|D Chain D, Crystal Structure Of Yaej Bound To The 70s Ribosome
gi|388325946|pdb|3V22|D Chain D, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
gi|388325999|pdb|3V24|D Chain D, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
gi|388326052|pdb|3V26|D Chain D, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
gi|388326105|pdb|3V28|D Chain D, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
gi|388326228|pdb|3V2C|D Chain D, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
gi|388326281|pdb|3V2E|D Chain D, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
gi|414145510|pdb|4DR1|D Chain D, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
gi|414145531|pdb|4DR2|D Chain D, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
gi|414145552|pdb|4DR3|D Chain D, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
gi|414145573|pdb|4DR4|D Chain D, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
gi|414145596|pdb|4DR5|D Chain D, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
gi|414145619|pdb|4DR6|D Chain D, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
gi|414145644|pdb|4DR7|D Chain D, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
gi|453055752|pdb|4DUY|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
gi|453055773|pdb|4DUZ|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
gi|453055794|pdb|4DV0|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
gi|453055815|pdb|4DV1|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
gi|453055836|pdb|4DV2|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
gi|453055857|pdb|4DV3|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
gi|453055878|pdb|4DV4|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
gi|453055899|pdb|4DV5|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
gi|453055920|pdb|4DV6|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
gi|453055941|pdb|4DV7|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
gi|4519422|dbj|BAA75548.1| ribosomal protein S4 [Thermus thermophilus]
gi|46197229|gb|AAS81643.1| SSU ribosomal protein S4P [Thermus thermophilus HB27]
gi|55773047|dbj|BAD71488.1| 30S ribosomal protein S4 [Thermus thermophilus HB8]
gi|383508857|gb|AFH38289.1| ribosomal protein S4, bacterial/organelle type [Thermus
thermophilus JL-18]
Length = 209
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 131/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E+QFR F E ++ KG TG + L LLESR DNVVYR+GF+ +R +ARQ
Sbjct: 60 EKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H VN + V++ SY+++PGD I+V EK++ I +LE + W+++D +
Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 GMKGKFLRLPDREDLALPVNEQL 202
>gi|51894183|ref|YP_076874.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863]
gi|81691984|sp|Q67JX0.1|RS4A_SYMTH RecName: Full=30S ribosomal protein S4 A
gi|51857872|dbj|BAD42030.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863]
Length = 207
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 6/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ L+LK + KC + R PGQHG S + ++Y Q R
Sbjct: 1 MARYTGPVCRLCRREGVKLYLK-GEKCYSDKCPIVKRATPPGQHG-ASRRKPTEYAIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R YG+LE+QF RYF +R KG TGE++L+ LE R DNVVYRMGF+++R+EARQ
Sbjct: 59 EKQKARRYYGVLERQFERYFEMASRKKGVTGEVLLQTLERRLDNVVYRMGFAASRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H VN + VNI SY ++ GD+++VRE +++ RI + + P +W++VD +
Sbjct: 119 IVKHSHIEVNGRKVNIPSYLVREGDVVAVRESSREHKRIKELAAAATRTVP-AWLSVDPE 177
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G PNR E + + L
Sbjct: 178 ALRGTVLRLPNRDEIDTPVQEQL 200
>gi|225175647|ref|ZP_03729641.1| ribosomal protein S4 [Dethiobacter alkaliphilus AHT 1]
gi|225168976|gb|EEG77776.1| ribosomal protein S4 [Dethiobacter alkaliphilus AHT 1]
Length = 209
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 122/194 (62%), Gaps = 4/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G + CRREG+ L+LK R KC +D R PGQHG+ + S+YG Q R
Sbjct: 1 MARYTGSVCRQCRREGLKLYLKGER-CYTEKCAVDRRAYAPGQHGQRRRGKVSEYGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R YG+LE QF +YF E R KG TGE +L++LESR DNVVYRMGF+ +R EARQ
Sbjct: 60 EKQKARRTYGVLESQFHKYFKEADRRKGITGENLLQILESRLDNVVYRMGFALSRPEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN + V+I SY+++P D+++VRE ++ + R + EL W+ VD +
Sbjct: 120 LVKHGHFTVNGRKVDIPSYQVRPDDVVAVREASRDKGRFKDLAELMRTQGTMEWVNVDRE 179
Query: 178 KMEGVFKSEPNRSE 191
+ G P R E
Sbjct: 180 NLAGKVLRLPTREE 193
>gi|145588267|ref|YP_001154864.1| DNA-directed RNA polymerase subunit alpha [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|189043841|sp|A4SUY6.1|RPOA_POLSQ RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|145046673|gb|ABP33300.1| DNA-directed RNA polymerase subunit alpha [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 326
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 109/129 (84%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+II V+ L +N AKV+MEPFERGYG+TLGNALRRVLLSSM+G APTEV I+G +
Sbjct: 3 TNLLKPKIISVEALTANQAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVAIAGVV 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYS+L+GVQED+++++LNLKG++ KL +RD +NL+K G VV A DI+L D+E++N
Sbjct: 63 HEYSTLDGVQEDVVNLLLNLKGIVFKLQSRDEVTINLRKEGPGVVTAKDIDLPHDVEIMN 122
Query: 317 PNHIIAHLS 325
P+H+IAHLS
Sbjct: 123 PDHVIAHLS 131
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEK-VDPILLRPVDDLELTVRSANCLK 386
EEAIRQ+A +LVDQL VFAALE++ V +L S VDP+L+RPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQAASILVDQLVVFAALESSEVSGDLAPSRSSMVDPMLMRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIK++LA+RG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKDVLAARG 309
>gi|389873955|ref|YP_006381374.1| 50S ribosomal protein L17 [Advenella kashmirensis WT001]
gi|388539204|gb|AFK64392.1| 50S ribosomal protein L17 [Advenella kashmirensis WT001]
Length = 129
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 104/118 (88%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR G RKLNRTSSHRL M RNM++SL+++E IKTTLPKAKELRRV+EP++TL+K+ TL
Sbjct: 1 MRHRSGLRKLNRTSSHRLAMFRNMSVSLIQHEAIKTTLPKAKELRRVIEPLITLAKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPRY + NGGY R+LKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFARLRDRDAVVKLFAEIGPRYKERNGGYTRVLKMGFRQGDNAPMAFMELVDR 118
>gi|149926592|ref|ZP_01914852.1| DNA-directed RNA polymerase subunit alpha [Limnobacter sp. MED105]
gi|149824521|gb|EDM83737.1| DNA-directed RNA polymerase subunit alpha [Limnobacter sp. MED105]
Length = 326
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 108/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKPRI++V+T+ N AKV+MEPFERGYG+TLGNALRRVLLSSMIG APTEV I+G +HE
Sbjct: 6 LLKPRIVEVETVAPNSAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVSIAGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L+GVQED++D++LNLKG++ KL +RD + LK+ + VV A DIEL D+E++NP+
Sbjct: 66 YSTLDGVQEDVVDLLLNLKGIVFKLESRDVVTVTLKREVEGVVTAGDIELPHDVEIINPD 125
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 126 HVIAHLS 132
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/99 (76%), Positives = 89/99 (89%), Gaps = 1/99 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EE+IR +AR+LV+QL+VFAALENT + E+ +VDPILLRPVDDLELTVRSANCLKA
Sbjct: 211 EESIRLAARILVEQLSVFAALENT-AEPEVSQRAPQVDPILLRPVDDLELTVRSANCLKA 269
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 270 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 308
>gi|32266901|ref|NP_860933.1| 30S ribosomal protein S4 [Helicobacter hepaticus ATCC 51449]
gi|41017829|sp|Q7VGC0.1|RS4_HELHP RecName: Full=30S ribosomal protein S4
gi|32262953|gb|AAP77999.1| ribosomal protein S4 [Helicobacter hepaticus ATCC 51449]
Length = 208
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR GI L LK RR L KC LD RP GQHG+ G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGISLALKGERR-LAGKCALDKRPYGPGQHGQKRG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F E R +G TGE +++++E R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKIMYGVSEKQFRALFKEANRQEGNTGENLVRIIEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY +KPG I V+EK+K ++ +++L+ + W+ VD +
Sbjct: 119 LVTHGHILVNGKRVDIPSYMVKPGQKIEVKEKSKNNPQVIRAIDLTSQTGIVPWVDVDKE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKFGIFTRFPQREEVVIPIEERL 201
>gi|378821704|ref|ZP_09844573.1| ribosomal protein L17 [Sutterella parvirubra YIT 11816]
gi|378599480|gb|EHY32499.1| ribosomal protein L17 [Sutterella parvirubra YIT 11816]
Length = 131
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 101/115 (87%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTS+HRL MLRNM SL+++E IKTTLPKAKELRRVVEP++TL+K+ T+
Sbjct: 1 MRHRHGLRKLNRTSAHRLAMLRNMMCSLIKHEAIKTTLPKAKELRRVVEPMITLAKEPTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIEL 544
+NKRLAF+ LRDR++ +KLF E+GPR+ GGY RILKMGFRVGDNAPMA++EL
Sbjct: 61 ANKRLAFNRLRDREVVVKLFDEIGPRFANRQGGYTRILKMGFRVGDNAPMAYMEL 115
>gi|34558005|ref|NP_907820.1| 30S ribosomal protein S4 [Wolinella succinogenes DSM 1740]
gi|41017817|sp|Q7M8F6.1|RS4_WOLSU RecName: Full=30S ribosomal protein S4
gi|34483723|emb|CAE10720.1| 30S RIBOSOMAL PROTEIN S4 [Wolinella succinogenes]
Length = 208
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP K+ RR G+ L LK RR L K L+ RP GQHG+ S+ S+YG Q R
Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERR-LAGKSSLEKRPYAPGQHGQ-RRSKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F E RL+G TGE+++KLLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGISEKQFRSIFQEANRLEGNTGELLIKLLERRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++SH LV+ K VNI SY + PG + +REK+K ++ S+EL++ + W+ VD
Sbjct: 119 MVSHGHVLVDGKRVNIPSYMVLPGQKVEIREKSKNNPQVQRSIELTKQTGIAPWVDVDQA 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G+F P R E + + L
Sbjct: 179 KVFGIFTRLPEREEVVIPVEERL 201
>gi|119472063|ref|ZP_01614321.1| 30S ribosomal protein S4 [Alteromonadales bacterium TW-7]
gi|119445198|gb|EAW26490.1| 30S ribosomal protein S4 [Alteromonadales bacterium TW-7]
Length = 122
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLETAPGQHGARKG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF+STR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLVS 119
Query: 121 HRA 123
H+A
Sbjct: 120 HKA 122
>gi|119899679|ref|YP_934892.1| 50S ribosomal protein L17 [Azoarcus sp. BH72]
gi|166216136|sp|A1KB00.1|RL17_AZOSB RecName: Full=50S ribosomal protein L17
gi|119672092|emb|CAL96006.1| 50S ribosomal protein L17 [Azoarcus sp. BH72]
Length = 131
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHR M RNM +LLR+E+IKTTLPKAKELRRVVEP++TL KK +L
Sbjct: 1 MRHRHGLRKLNRTSSHRQAMFRNMANALLRHEVIKTTLPKAKELRRVVEPMITLGKKPSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF LRDR+I +KLF ELGPRY NGGY+RILK GFR GDNAPMA +ELL++
Sbjct: 61 ANRRLAFDRLRDREIVVKLFDELGPRYATRNGGYLRILKFGFRDGDNAPMALVELLDR 118
>gi|302877828|ref|YP_003846392.1| 50S ribosomal protein L17 [Gallionella capsiferriformans ES-2]
gi|302580617|gb|ADL54628.1| ribosomal protein L17 [Gallionella capsiferriformans ES-2]
Length = 128
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR G RKLNRTSSHRL M RNMT+SLLR+E+IKTTLPKAKELRRV EPILTL K TL
Sbjct: 1 MRHRLGLRKLNRTSSHRLAMFRNMTVSLLRHEVIKTTLPKAKELRRVAEPILTLGKTPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR++ KLF ELGPRY NGGY+R+LK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDREMVTKLFEELGPRYATRNGGYLRVLKFGFRQGDNAPMALVELMDR 118
>gi|115376109|ref|ZP_01463354.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1]
gi|310821021|ref|YP_003953379.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1]
gi|115366924|gb|EAU65914.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1]
gi|309394093|gb|ADO71552.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1]
Length = 208
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + ++LK R D KC ++ RP GQHG+ + S YG Q R
Sbjct: 1 MARYTASACRICRRENLKMYLKGDRCYTD-KCAIERRPYPPGQHGQ-GRVKFSGYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QFR Y+ + KGKTGE +L+ LE R DNVV+RMGF+ TR+EARQ
Sbjct: 59 EKQKVKRMYGLLESQFRGYYHRASAAKGKTGENLLQQLELRLDNVVFRMGFADTRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN K VNI S+ +KPG + V EK++K RI+ +LE + WI +D K
Sbjct: 119 LVRHGHFSVNGKKVNIPSFAVKPGSSVEVVEKSRKVLRISEALETVDRRGVPQWIDLDKK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ PNR + I + L
Sbjct: 179 SFKGTVKTVPNREDLTMPIQEQL 201
>gi|225076420|ref|ZP_03719619.1| hypothetical protein NEIFLAOT_01465 [Neisseria flavescens
NRL30031/H210]
gi|224952268|gb|EEG33477.1| hypothetical protein NEIFLAOT_01465 [Neisseria flavescens
NRL30031/H210]
Length = 328
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 106/134 (79%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL S AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV+IS
Sbjct: 3 NSTTEFLKPRQIDVDTLSSTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVVIS 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++D++LN+KG++ KL+ R+ L LKK G V+A DI+L D+E
Sbjct: 63 GVLHEYSTIDGVQEDVVDVLLNIKGIVFKLHGRNQVQLTLKKTGAGAVVAGDIDLPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HLSDN
Sbjct: 123 IINPEHVICHLSDN 136
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|404495510|ref|YP_006719616.1| 30S ribosomal protein S4 [Geobacter metallireducens GS-15]
gi|90101690|sp|Q39XY0.1|RS4_GEOMG RecName: Full=30S ribosomal protein S4
gi|78193127|gb|ABB30894.1| ribosomal protein S4 [Geobacter metallireducens GS-15]
Length = 208
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 134/204 (65%), Gaps = 7/204 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE ++LFLK R D KC + R PGQHG+ + S+YG Q R
Sbjct: 1 MARYTGPSCRLCRRENMELFLKGERCYTD-KCAIKRRNYPPGQHGQ-GRPKVSNYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG+LEKQFR YF E R++G TGE +L LLE R DNVVYR+GF+S+R+EAR
Sbjct: 59 EKQKVRRIYGVLEKQFRSYFEEADRMRGVTGENLLSLLERRLDNVVYRLGFASSRTEARI 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE-LSEHSTPFSWITVDA 176
L+ H F +N + NI S ++K GD++ ++EK++K I SL+ + TP W+ +D
Sbjct: 119 LVRHNHFTLNGRKANIPSIQLKAGDVVVLKEKSRKIACINESLDAVVRRGTP-QWLELDK 177
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
+ +GV K P R + A I + L
Sbjct: 178 EGYKGVVKLLPAREDIAMPIQEQL 201
>gi|319639574|ref|ZP_07994321.1| DNA-directed RNA polymerase subunit alpha [Neisseria mucosa C102]
gi|317399145|gb|EFV79819.1| DNA-directed RNA polymerase subunit alpha [Neisseria mucosa C102]
Length = 328
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 106/134 (79%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL S AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV+IS
Sbjct: 3 NSTTEFLKPRQIDVDTLSSTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVVIS 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++D++LN+KG++ KL+ R+ L LKK G V+A DI+L D+E
Sbjct: 63 GVLHEYSTIDGVQEDVVDVLLNIKGIVFKLHGRNQVQLTLKKAGAGAVVAGDIDLPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HLSDN
Sbjct: 123 IINPEHVICHLSDN 136
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|383455056|ref|YP_005369045.1| 30S ribosomal protein S4 [Corallococcus coralloides DSM 2259]
gi|380734251|gb|AFE10253.1| 30S ribosomal protein S4 [Corallococcus coralloides DSM 2259]
Length = 208
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + ++LK R D KC ++ RP GQHG+ + S YG Q R
Sbjct: 1 MARYTASACRICRRENLKMYLKGDRCYTD-KCAIERRPYPPGQHGQ-GRVKFSGYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QFR Y+ + KGKTGE +L+ LE R DNVV+RMGF+ TR+EARQ
Sbjct: 59 EKQKVKRMYGLLENQFRGYYHRASAAKGKTGENLLQQLELRLDNVVFRMGFADTRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN + VNI S+ +KPG + V EK++K RI+ +LE + WI +D K
Sbjct: 119 LVRHGHFQVNGRRVNIPSFAVKPGSAVEVAEKSRKVLRISEALETVDRRGVPQWIDLDKK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ PNR + I + L
Sbjct: 179 AFKGTVKTVPNREDLTMPIQEQL 201
>gi|118444508|ref|YP_877226.1| 30S ribosomal protein S4 [Clostridium novyi NT]
gi|152060917|sp|A0PXX4.1|RS4A_CLONN RecName: Full=30S ribosomal protein S4 A
gi|118134964|gb|ABK62008.1| ribosomal protein S4 [Clostridium novyi NT]
Length = 206
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARYIG +LCRREG+ LFLK R D KC R PGQHG+ + S+YG Q R
Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTD-KCAFARRSYAPGQHGQ-GRKKLSNYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YGILE QFR+Y+ + ++G TGE +LKLLE R DNVVY++GF S+R+EARQ
Sbjct: 59 EKQKARRIYGILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYKLGFGSSRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K V+I SY++ GD+ISVREK++ + E + + P +W+ + +
Sbjct: 119 LVTHGHFLVNGKKVDIISYQVSAGDVISVREKSRGTEKFKTFAE-NPKTLP-AWLEGNIE 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG +EP R++ +N+ L
Sbjct: 177 NFEGKVIAEPTRADIDVPVNETL 199
>gi|71905987|ref|YP_283574.1| DNA-directed RNA polymerase subunit alpha [Dechloromonas aromatica
RCB]
gi|90110836|sp|Q47J77.1|RPOA_DECAR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|71845608|gb|AAZ45104.1| DNA-directed RNA polymerase subunit alpha [Dechloromonas aromatica
RCB]
Length = 324
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 105/127 (82%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKPRIIDV+++ AKV+MEPFERGYG+TLGNALRR+LLSSM+G APTEV I G LHE
Sbjct: 6 LLKPRIIDVQSVSPVQAKVVMEPFERGYGHTLGNALRRILLSSMVGYAPTEVGIDGVLHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED++DI+LNLKGV+ KL+NRD L L K G+ V A DIEL D+E++NP
Sbjct: 66 YSTVDGVQEDVVDILLNLKGVVFKLHNRDVVNLKLVKEGEGAVRAGDIELPHDVEIINPE 125
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 126 HVIAHLS 132
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 88/100 (88%), Gaps = 3/100 (3%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANCLK 386
EEAIR +ARVL++QL+VFA LE T PV + S +VDP+LLRPVDDLELTVRSANCLK
Sbjct: 209 EEAIRYAARVLMEQLSVFADLEGTAPVAEA--SKPAQVDPVLLRPVDDLELTVRSANCLK 266
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 267 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 306
>gi|83591248|ref|YP_431257.1| 30S ribosomal protein S4 [Moorella thermoacetica ATCC 39073]
gi|123725621|sp|Q2RFS5.1|RS4_MOOTA RecName: Full=30S ribosomal protein S4
gi|83574162|gb|ABC20714.1| SSU ribosomal protein S4P [Moorella thermoacetica ATCC 39073]
Length = 208
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY +LCRREG LFLK R KC + R PGQHG+ + S+YG Q R
Sbjct: 1 MARYKDSTCRLCRREGTKLFLKGDR-CYSDKCAVARRSYPPGQHGQ-GRKKVSEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE+QFR YF + R KG TGE +L LLE R DNVVYR+GF+ +R+EAR
Sbjct: 59 EKQKVRRIYGILERQFRNYFEKAERQKGVTGENLLILLERRLDNVVYRLGFADSRAEART 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H FLVN + VNI SY ++PGD ISVREK+K + E + H +W+ D+
Sbjct: 119 LVRHGHFLVNGRKVNIPSYLVRPGDTISVREKSKASPKFKEIAEAAAHRNVPAWLKADSS 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+EG + P R + + L
Sbjct: 179 TLEGHVLALPTREQIDTPAQEHL 201
>gi|298370566|ref|ZP_06981881.1| DNA-directed RNA polymerase, alpha subunit [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281176|gb|EFI22666.1| DNA-directed RNA polymerase, alpha subunit [Neisseria sp. oral
taxon 014 str. F0314]
Length = 328
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/134 (61%), Positives = 104/134 (77%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVDTLSTTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++DI+LN+KG++ KLY R L LKK G V+A DIEL D+E
Sbjct: 63 GVLHEYSTVDGVQEDVVDILLNIKGIVFKLYGRSQVQLTLKKSGTGTVVAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HLSDN
Sbjct: 123 IINPEHVICHLSDN 136
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EIEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|148263164|ref|YP_001229870.1| 30S ribosomal protein S4 [Geobacter uraniireducens Rf4]
gi|189045382|sp|A5GAU5.1|RS4_GEOUR RecName: Full=30S ribosomal protein S4
gi|146396664|gb|ABQ25297.1| SSU ribosomal protein S4P [Geobacter uraniireducens Rf4]
Length = 208
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE +LFLK R D KC + R PGQHG+ ++TSDYG Q R
Sbjct: 1 MARYTGPSCRLCRRENTELFLKGERCYTD-KCAIKRRNYPPGQHGQ-GRTKTSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE QFR YF RLKG TGE +L LLE R DN+ YR+GF+S+R EARQ
Sbjct: 59 EKQKVRRIYGILENQFRGYFERADRLKGVTGENLLFLLERRLDNIAYRLGFASSRIEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N + V I S ++K GD++ +REK++K I SLE W+ +D
Sbjct: 119 LVRHGHFTLNGRKVTIPSIQVKAGDVLELREKSRKVACINESLEAVVRRGIPQWLELDKG 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + I + L
Sbjct: 179 AYKGAVKTLPAREDITMPIQEQL 201
>gi|197117349|ref|YP_002137776.1| 30S ribosomal protein S4 [Geobacter bemidjiensis Bem]
gi|226699068|sp|B5EFS6.1|RS4_GEOBB RecName: Full=30S ribosomal protein S4
gi|197086709|gb|ACH37980.1| ribosomal protein S4 [Geobacter bemidjiensis Bem]
Length = 208
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG +LFLK R D KC + R PGQHG+ + SDYG Q R
Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTD-KCAIKRRSYPPGQHGQ-GRIKVSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE QFR YF R+KG TGE +L +LE R DNV YR+GF+++R EARQ
Sbjct: 59 EKQKVRRIYGILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N K VNI S ++K GD++ +REK++K I+ SLE W+ ++
Sbjct: 119 LVRHGHFTLNGKKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + I + L
Sbjct: 179 AFKGTVKAMPVREDITMPIQEQL 201
>gi|301057497|ref|ZP_07198593.1| ribosomal protein S4 [delta proteobacterium NaphS2]
gi|300448425|gb|EFK12094.1| ribosomal protein S4 [delta proteobacterium NaphS2]
Length = 209
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 131/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY +LCRRE + LFLK R KC + R PGQHG+ G + SDY Q R
Sbjct: 1 MARYRDSSCRLCRRENLKLFLKGDR-CYGDKCAFERRAYAPGQHGQRRGGKLSDYSQQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YGILEKQF+ Y+ R KG TG +L LLESR DNVVY+MGF+++R++ARQ
Sbjct: 60 EKQKVKRIYGILEKQFKGYYYRAERQKGITGTNLLLLLESRLDNVVYKMGFAASRTQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
LI H FLVN+K VNI SY++K GD++ +EK+++ ++I ++E W+ V+ +
Sbjct: 120 LIRHNHFLVNQKKVNIPSYQVKVGDVVEAKEKSREVSQIIEAMETVVRRGVPGWMEVEKE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G+ K PNR + I + L
Sbjct: 180 AFKGMMKGLPNREDLTMPIQEQL 202
>gi|188584864|ref|YP_001916409.1| 30S ribosomal protein S4 [Natranaerobius thermophilus JW/NM-WN-LF]
gi|226699094|sp|B2A4P9.1|RS4_NATTJ RecName: Full=30S ribosomal protein S4
gi|179349551|gb|ACB83821.1| SSU ribosomal protein S4P [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 209
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 131/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG LFLK R D KC +D + PGQHG S+ S+YG Q R
Sbjct: 1 MARYQGPVCRLCRREGTKLFLKGERCYTD-KCAIDKKAYAPGQHGPTRRSKQSEYGMQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YG+LE QFRRYF E R KG TG+ +L+LLE+R DNVVYRMGF+++R+EARQ
Sbjct: 60 EKQKARRIYGVLENQFRRYFREADRKKGITGQTLLRLLETRLDNVVYRMGFAASRAEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++H +VN K VN+ASY++KPGD + VREK++ R+ EL+E W+ D +
Sbjct: 120 FVNHGHIMVNGKRVNVASYEVKPGDEVVVREKSRDIPRVQELKELAEGYRVPEWLEADHE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
G P R E + + L
Sbjct: 180 NFTGRVVRYPEREEIDVPVEEHL 202
>gi|421494919|ref|ZP_15942256.1| RPSD [Morganella morganii subsp. morganii KT]
gi|400190808|gb|EJO23967.1| RPSD [Morganella morganii subsp. morganii KT]
Length = 143
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 107/136 (78%)
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LE+QFR Y+ E RLKG TGE +L LLE R DNV+YRMGF +TR+EARQ++SH+A
Sbjct: 1 MYGVLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVIYRMGFGATRAEARQIVSHKAV 60
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
+VN ++VNIASY++ P D+IS+REKAKKQ+RI +LEL+E +W+ VDA KMEGVFK
Sbjct: 61 MVNGRVVNIASYQVSPNDVISIREKAKKQSRIKAALELAEQREKPTWLEVDAAKMEGVFK 120
Query: 185 SEPNRSEFANDINDLL 200
P R++ + DIN+ L
Sbjct: 121 RIPERTDLSADINEHL 136
>gi|221064829|ref|ZP_03540934.1| DNA-directed RNA polymerase, alpha subunit [Comamonas testosteroni
KF-1]
gi|264680560|ref|YP_003280470.1| DNA-directed RNA polymerase subunit alpha [Comamonas testosteroni
CNB-2]
gi|299532876|ref|ZP_07046263.1| DNA-directed RNA polymerase subunit alpha [Comamonas testosteroni
S44]
gi|418529069|ref|ZP_13095010.1| DNA-directed RNA polymerase subunit alpha [Comamonas testosteroni
ATCC 11996]
gi|220709852|gb|EED65220.1| DNA-directed RNA polymerase, alpha subunit [Comamonas testosteroni
KF-1]
gi|262211076|gb|ACY35174.1| DNA-directed RNA polymerase, alpha subunit [Comamonas testosteroni
CNB-2]
gi|298719100|gb|EFI60070.1| DNA-directed RNA polymerase subunit alpha [Comamonas testosteroni
S44]
gi|371454027|gb|EHN67038.1| DNA-directed RNA polymerase subunit alpha [Comamonas testosteroni
ATCC 11996]
Length = 332
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 108/128 (84%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG N AKV++EPFERGYG+TLGNALRRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKTINVEQLGHNRAKVVLEPFERGYGHTLGNALRRVLLSSMVGYAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
EYSS++GVQED+ +I+LNLKGV+ KL+NRD L+L+K G+ VV A DI+ D+E+VNP
Sbjct: 64 EYSSIDGVQEDVTNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVNP 123
Query: 318 NHIIAHLS 325
+H+IAHLS
Sbjct: 124 DHVIAHLS 131
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 84/105 (80%), Gaps = 6/105 (5%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDS------SLEKVDPILLRPVDDLELTVRS 381
E+A+R SA++LV+QL VFA L+ + D+ + DPILLRPVD+LELTVRS
Sbjct: 210 EDAVRASAKILVEQLAVFAQLDGGDIASVFDAPAGGRGAATSFDPILLRPVDELELTVRS 269
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 314
>gi|420149479|ref|ZP_14656655.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 335 str. F0486]
gi|394753702|gb|EJF37209.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 335 str. F0486]
Length = 201
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MARY GPK K+ R+ G +F +S + K + PGQHG ++ S+Y Q +EK
Sbjct: 1 MARYTGPKTKIARKFGEAIF--GDDKSFERK---NYPPGQHGLARRRAKRSEYAIQLQEK 55
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK K YGILEKQF + + R K TGE++L+L ESR DNVVYRMG + TRS ARQL+
Sbjct: 56 QKAKYTYGILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLV 115
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR VN IVNI SY +KPGD++ VREK+K + I NS L+ HST + WIT + +KM
Sbjct: 116 SHRHITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVIENS--LAAHSTVYEWITWNPEKM 173
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG F + P R + +I + L
Sbjct: 174 EGTFVAVPQRIQIPENIKEQL 194
>gi|384438888|ref|YP_005653612.1| 30S ribosomal protein S4 [Thermus sp. CCB_US3_UF1]
gi|359290021|gb|AEV15538.1| 30S ribosomal protein S4 [Thermus sp. CCB_US3_UF1]
Length = 209
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 130/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRTRRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E QFR F E +R KG TG + L LLESR DNVVYR+GF+++R +ARQ
Sbjct: 60 EKQKLRRIYGISETQFRNLFEEASRKKGVTGTVFLGLLESRLDNVVYRLGFAASRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H VN + V++ +Y++KPGD I++ E +K I +LE + W+++D +
Sbjct: 120 MVRHGHITVNGRRVDLPAYRVKPGDEIAIAEGSKNLAFIRENLEAMKGRKVGPWLSLDVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 GMKGKFLRLPDREDLALPVNEQL 202
>gi|442321566|ref|YP_007361587.1| 30S ribosomal protein S4 [Myxococcus stipitatus DSM 14675]
gi|441489208|gb|AGC45903.1| 30S ribosomal protein S4 [Myxococcus stipitatus DSM 14675]
Length = 208
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + ++LK R D KC ++ RP GQHG+ + S YG Q R
Sbjct: 1 MARYTASACRICRRENLKMYLKGDRCYTD-KCAIERRPYPPGQHGQ-GRVKFSGYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QFR Y+ + KGKTGE +L+ LE R DNVV+RMGF+ TR+EARQ
Sbjct: 59 EKQKVKRMYGLLENQFRGYYHRASAAKGKTGENLLQQLELRLDNVVFRMGFADTRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN + VNI S+ IKPG + V EK++K RI+ +LE + WI +D K
Sbjct: 119 LVRHGHFQVNGRKVNIPSFSIKPGTAVEVVEKSRKVLRISEALETVDRRGVPQWIDLDKK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G ++ PNR + I + L
Sbjct: 179 AFKGTVRTVPNREDLTMPIQEQL 201
>gi|241759603|ref|ZP_04757704.1| DNA-directed RNA polymerase, alpha subunit [Neisseria flavescens
SK114]
gi|261380584|ref|ZP_05985157.1| DNA-directed RNA polymerase, alpha subunit [Neisseria subflava
NJ9703]
gi|241319975|gb|EER56356.1| DNA-directed RNA polymerase, alpha subunit [Neisseria flavescens
SK114]
gi|284796552|gb|EFC51899.1| DNA-directed RNA polymerase, alpha subunit [Neisseria subflava
NJ9703]
Length = 328
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 106/134 (79%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL S AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV+IS
Sbjct: 3 NSTTEFLKPRQIDVDTLSSTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVVIS 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++D++LN+KG++ KL+ R+ L LKK G V+A DI+L D+E
Sbjct: 63 GVLHEYSTIDGVQEDVVDVLLNIKGIVFKLHGRNQVQLTLKKTGAGAVVAGDIDLPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HL+DN
Sbjct: 123 IINPEHVICHLADN 136
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|7440168|pir||JE0399 ribosomal protein S4 - Thermus aquaticus (strain HB8)
Length = 209
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 131/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E+QFR F E ++ KG TG + L LLESR DNVVYR+GF+ +R +ARQ
Sbjct: 60 EKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H VN + V++ SY+++PGD I+V EK++ I +LE + W++++ +
Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLEVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 GMKGKFLRLPDREDLALPVNEQL 202
>gi|39997924|ref|NP_953875.1| 30S ribosomal protein S4 [Geobacter sulfurreducens PCA]
gi|409913276|ref|YP_006891741.1| 30S ribosomal protein S4 [Geobacter sulfurreducens KN400]
gi|61215647|sp|Q749B2.1|RS4_GEOSL RecName: Full=30S ribosomal protein S4
gi|39984869|gb|AAR36225.1| ribosomal protein S4 [Geobacter sulfurreducens PCA]
gi|307635098|gb|ADI85585.2| ribosomal protein S4 [Geobacter sulfurreducens KN400]
Length = 208
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE ++LFLK R D KC + R PGQHG+ + S+YG Q R
Sbjct: 1 MARYTGPSCRLCRRENMELFLKGERCYTD-KCAIKRRNYPPGQHGQ-GRPKVSNYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILEKQFR YF E RLKG TGE +L LLE R DNVVYR+GF+++R+EAR
Sbjct: 59 EKQKVRRIYGILEKQFRSYFQEADRLKGVTGENLLSLLERRLDNVVYRLGFAASRTEARI 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N K NI S +++ GD++ ++EK++K I SL+ W+ ++
Sbjct: 119 LVRHNHFTLNGKKANIPSIQLRAGDVVELKEKSRKIACINESLDAVVRRGIPQWLELEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+GV K+ P R + I + L
Sbjct: 179 AYKGVVKTLPVREDITMPIQEQL 201
>gi|149922188|ref|ZP_01910626.1| SSU ribosomal protein S4P [Plesiocystis pacifica SIR-1]
gi|149816928|gb|EDM76413.1| SSU ribosomal protein S4P [Plesiocystis pacifica SIR-1]
Length = 202
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 4/195 (2%)
Query: 9 AKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFREKQKVKRM 65
+LCRRE LFLK R KC D R PGQHG+ R SDYG+Q REKQKVKRM
Sbjct: 2 CRLCRREDQKLFLKGDR-CFSEKCAYDRRQYPPGQHGQGRRRRPSDYGHQLREKQKVKRM 60
Query: 66 YGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFL 125
YG+LEKQFR Y+ + AR+KG TGE +L LLE R DNV R GF+++ +EARQL+ H F
Sbjct: 61 YGLLEKQFRGYYFKAARMKGITGENLLSLLERRLDNVAVRCGFAASHAEARQLVRHGHFT 120
Query: 126 VNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKS 185
+N K VNI SY+++ G+ I VREK++K +I ++L + S +W+ +D + K+
Sbjct: 121 INGKKVNIPSYQVREGEEIVVREKSRKIQKIVDALAKLDRSPLPTWLEIDRDNFKAKIKN 180
Query: 186 EPNRSEFANDINDLL 200
P RS+ + DI++ L
Sbjct: 181 VPQRSDISADIDEQL 195
>gi|405351425|ref|ZP_11022908.1| SSU ribosomal protein S4p (S9e) [Chondromyces apiculatus DSM 436]
gi|397093316|gb|EJJ24039.1| SSU ribosomal protein S4p (S9e) [Myxococcus sp. (contaminant ex DSM
436)]
Length = 208
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + ++LK R D KC ++ RP GQHG+ + S YG Q R
Sbjct: 1 MARYTASACRICRRENLKMYLKGDRCYTD-KCAIERRPYPPGQHGQ-GRVKFSGYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QFR Y+ + KGKTGE +L+ LE R DNVV+RMGF+ TR+EARQ
Sbjct: 59 EKQKVKRMYGLLENQFRGYYHRASAAKGKTGENLLQQLELRLDNVVFRMGFADTRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN + VNI S+ +KPG + V EK++K RI+ +LE + WI++D K
Sbjct: 119 LVRHGHFQVNGRKVNIPSFAVKPGSAVEVVEKSRKVLRISEALETVDRRGVPQWISLDKK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G + PNR + I++ L
Sbjct: 179 SFKGTVTTVPNREDLTMPISEQL 201
>gi|268316434|ref|YP_003290153.1| 30S ribosomal protein S4 [Rhodothermus marinus DSM 4252]
gi|345303852|ref|YP_004825754.1| 30S ribosomal protein S4 [Rhodothermus marinus SG0.5JP17-172]
gi|262333968|gb|ACY47765.1| ribosomal protein S4 [Rhodothermus marinus DSM 4252]
gi|345113085|gb|AEN73917.1| ribosomal protein S4 [Rhodothermus marinus SG0.5JP17-172]
Length = 200
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 133/200 (66%), Gaps = 7/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK K+ RR G +F S ++L+ K PGQHGR ++ S+Y Q +EKQ
Sbjct: 1 MARYRGPKQKIARRFGEPIFGPS--KALERKP---YPPGQHGRTRRAKESEYAVQLKEKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVK +YG+LE+QFR F + R KG TGE +LK+LE+R DN VYRMGF+ TR +ARQL+
Sbjct: 56 KVKHIYGLLERQFRNLFEKATRKKGITGENLLKMLEARLDNTVYRMGFARTRRQARQLVV 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR +VN ++VN+ SY+++PGD+++VR K+++ I +++ + F W+ VD K+M+
Sbjct: 116 HRHIMVNGQVVNVPSYQLRPGDVVAVRPKSRQLAVIQENIKRLRRN--FPWLEVDRKEMQ 173
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F PNR + +I + L
Sbjct: 174 GKFLDYPNREDIPENIREHL 193
>gi|256830514|ref|YP_003159242.1| 30S ribosomal protein S4 [Desulfomicrobium baculatum DSM 4028]
gi|256579690|gb|ACU90826.1| ribosomal protein S4 [Desulfomicrobium baculatum DSM 4028]
Length = 208
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GPK ++CRREG LFLK R D KC + R PG HG+ + + SDY Q R
Sbjct: 1 MARYTGPKCRICRREGGKLFLKGDRCYTD-KCAFERRAYAPGDHGK-ARKKPSDYALQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV++MYGILE QFRRYF E R KG TG +L LLE+R DNV Y++GF+++RS+ARQ
Sbjct: 59 EKQKVRKMYGILEGQFRRYFEEAERRKGITGTNLLMLLETRIDNVAYKLGFANSRSQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H F +N + VN+ S ++K GD++ VR++ KK I +LE+ +W+ +DA
Sbjct: 119 MVRHGLFSLNGRRVNVPSIQMKSGDVLEVRDRTKKNLVITEALEVVARRGVPAWLEIDAP 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + + + L
Sbjct: 179 AFKGSVKALPTREDITFPMTEQL 201
>gi|154174170|ref|YP_001409132.1| 30S ribosomal protein S4 [Campylobacter curvus 525.92]
gi|402546328|ref|ZP_10843203.1| ribosomal protein S4 [Campylobacter sp. FOBRC14]
gi|171769259|sp|A7H0Z0.1|RS4_CAMC5 RecName: Full=30S ribosomal protein S4
gi|112802255|gb|EAT99599.1| ribosomal protein S4 [Campylobacter curvus 525.92]
gi|401017141|gb|EJP75902.1| ribosomal protein S4 [Campylobacter sp. FOBRC14]
Length = 208
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYTGPVEKLERRLGVSLALKGERR-LAGKSALDKRPYAPGQHGQ-RRAKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGISEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY+++PG + V EK+K +I +++L+ + W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEPGSKVEVIEKSKNNPQIVRAIDLTAQTGIVGWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F P R E
Sbjct: 179 KKFGIFTRNPEREE 192
>gi|313204943|ref|YP_004043600.1| 30S ribosomal protein S4 [Paludibacter propionicigenes WB4]
gi|312444259|gb|ADQ80615.1| SSU ribosomal protein S4P [Paludibacter propionicigenes WB4]
Length = 201
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 129/200 (64%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK+++ R+ G +F + L K + PGQHG+ +TS+YG Q REKQ
Sbjct: 1 MARYIGPKSRIARKFGEAIF--GPDKVL---AKKNYPPGQHGQGRRKKTSEYGIQLREKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LEKQFR + + R KG TGE++L+LLESR DN+VYR+GF+ TRS ARQL+S
Sbjct: 56 KAKYTYGVLEKQFRNMYEKAQRTKGVTGEVLLQLLESRLDNIVYRLGFAPTRSGARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ V+ K+VNIASY ++ G +I+VREK K IA SL HS + WI +A +
Sbjct: 116 HKHITVDGKVVNIASYHVRAGQVIAVREKDKSMEVIAASLNGFNHSK-YPWIEWNAASLS 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
GV+ P R + +I + L
Sbjct: 175 GVYLHIPEREDIPENIKEQL 194
>gi|168187786|ref|ZP_02622421.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund]
gi|169294366|gb|EDS76499.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund]
Length = 206
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 133/203 (65%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARYIG +LCRREG+ LFLK R D KC R PGQHG+ + S+YG Q R
Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTD-KCAFARRSYAPGQHGQ-GRKKLSNYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YGILE QFR+Y+ + ++G TGE +LKLLE R DNVVY++GF S+R+EARQ
Sbjct: 59 EKQKARRIYGILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYKLGFGSSRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K V+I SY++ GD+ISVREK++ + E + + P +W+ + +
Sbjct: 119 LVTHGHFLVNGKKVDIISYQVSAGDVISVREKSRGTEKFKTFAE-NPKTLP-AWLEGNIE 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG +EP R + +N+ L
Sbjct: 177 NFEGKVIAEPTRVDIDVPVNETL 199
>gi|157164972|ref|YP_001467696.1| 30S ribosomal protein S4 [Campylobacter concisus 13826]
gi|365154532|ref|ZP_09350965.1| 30S ribosomal protein S4 [Campylobacter sp. 10_1_50]
gi|416116575|ref|ZP_11594436.1| SSU ribosomal protein S4p (S9e) [Campylobacter concisus UNSWCD]
gi|171855075|sp|A7ZFY8.1|RS4_CAMC1 RecName: Full=30S ribosomal protein S4
gi|112800789|gb|EAT98133.1| ribosomal protein S4 [Campylobacter concisus 13826]
gi|363650370|gb|EHL89461.1| 30S ribosomal protein S4 [Campylobacter sp. 10_1_50]
gi|384577343|gb|EIF06629.1| SSU ribosomal protein S4p (S9e) [Campylobacter concisus UNSWCD]
Length = 208
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 128/194 (65%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K L+ RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYTGPVEKLERRLGVSLALKGERR-LAGKSALEKRPYAPGQHGQ-RRAKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY+++PG + V EK+K +I +++L+ + +W+ V+ +
Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEPGSKVEVAEKSKNNPQIVRAIDLTAQTGIVAWVDVEKE 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F P R E
Sbjct: 179 KKFGIFTRNPEREE 192
>gi|332286116|ref|YP_004418027.1| 50S ribosomal protein L17 [Pusillimonas sp. T7-7]
gi|330430069|gb|AEC21403.1| 50S ribosomal protein L17 [Pusillimonas sp. T7-7]
Length = 127
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR G RKLNRTSSHRL M RNM +SLL +E IKTTLPKAKELRRVVEP++TL K+ TL
Sbjct: 1 MRHRSGLRKLNRTSSHRLAMFRNMAVSLLTHEAIKTTLPKAKELRRVVEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR KLF+E+GPRY + NGGY R+LKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFARLRDRDAVTKLFAEIGPRYKERNGGYTRVLKMGFRQGDNAPMAFMELVDR 118
>gi|300690186|ref|YP_003751181.1| RNA polymerase subunit alpha; RNA polymerase alpha chain family
[Ralstonia solanacearum PSI07]
gi|299077246|emb|CBJ49872.1| RNA polymerase, alpha subunit; RNA polymerase alpha chain family
[Ralstonia solanacearum PSI07]
gi|344168992|emb|CCA81313.1| RNA polymerase, alpha subunit; RNA polymerase alpha chain family
[blood disease bacterium R229]
Length = 326
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 109/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+II V+ LG +HAKV+MEPFERGYG+TLGNALRRVLLSSM+G A TEV I+G +HE
Sbjct: 5 LLKPKIIAVEPLGDHHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYASTEVTIAGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED+++++LNLKGV+ KL+NRD ++L+K G+ VV A+DIEL D+E++NP
Sbjct: 65 YSTIDGVQEDVVNLLLNLKGVVFKLHNRDEVTVSLRKEGEGVVTAADIELPHDVEIINPG 124
Query: 319 HIIAHLS 325
H+IA LS
Sbjct: 125 HVIASLS 131
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANCLK 386
EEAIRQSAR+LVDQL+VFAALE T + + ++DPILLRPVDDLELTVRSANCLK
Sbjct: 210 EEAIRQSARILVDQLSVFAALEGTESAAEAAAARAPQIDPILLRPVDDLELTVRSANCLK 269
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|392961478|ref|ZP_10326936.1| ribosomal protein S4 [Pelosinus fermentans DSM 17108]
gi|421056284|ref|ZP_15519211.1| ribosomal protein S4 [Pelosinus fermentans B4]
gi|421058288|ref|ZP_15521000.1| ribosomal protein S4 [Pelosinus fermentans B3]
gi|421064594|ref|ZP_15526455.1| ribosomal protein S4 [Pelosinus fermentans A12]
gi|421072737|ref|ZP_15533841.1| ribosomal protein S4 [Pelosinus fermentans A11]
gi|421078721|ref|ZP_15539671.1| ribosomal protein S4 [Pelosinus fermentans JBW45]
gi|392438700|gb|EIW16523.1| ribosomal protein S4 [Pelosinus fermentans B4]
gi|392445164|gb|EIW22496.1| ribosomal protein S4 [Pelosinus fermentans A11]
gi|392453735|gb|EIW30598.1| ribosomal protein S4 [Pelosinus fermentans DSM 17108]
gi|392460754|gb|EIW37016.1| ribosomal protein S4 [Pelosinus fermentans A12]
gi|392461097|gb|EIW37325.1| ribosomal protein S4 [Pelosinus fermentans B3]
gi|392523197|gb|EIW46373.1| ribosomal protein S4 [Pelosinus fermentans JBW45]
Length = 211
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 127/205 (61%), Gaps = 6/205 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGR-ISGSRTSDYGYQF 56
MARY GP + CRREG L+LK R D KC + R PGQHG+ + + S+YG Q
Sbjct: 1 MARYTGPVCRQCRREGTKLYLKGERCYTD-KCSVGKRAYAPGQHGQGQTRKKVSEYGVQL 59
Query: 57 REKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEAR 116
REKQK +R+YGILE QFR YF + R KG TGE +L LLE R DNVVYR+GF+++R++AR
Sbjct: 60 REKQKARRVYGILETQFRSYFDKADRQKGITGENLLVLLERRLDNVVYRLGFAASRTQAR 119
Query: 117 QLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDA 176
QL++HR F VN K V+I SY IKPGD+I+V E +K+ I E H T W+
Sbjct: 120 QLVTHRHFTVNGKRVDIPSYLIKPGDVIAVHESSKESPLIKEITESLAHKTVAPWLERPT 179
Query: 177 KK-MEGVFKSEPNRSEFANDINDLL 200
++ M G P R E + + L
Sbjct: 180 QEVMNGTVLRYPTREEIDTPVQEHL 204
>gi|253701896|ref|YP_003023085.1| 30S ribosomal protein S4 [Geobacter sp. M21]
gi|259495281|sp|C6E4N1.1|RS4_GEOSM RecName: Full=30S ribosomal protein S4
gi|251776746|gb|ACT19327.1| ribosomal protein S4 [Geobacter sp. M21]
Length = 208
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG +LFLK R D KC + R PGQHG+ + SDYG Q R
Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTD-KCAIKRRSYPPGQHGQ-GRIKVSDYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE QFR YF R+KG TGE +L +LE R DNV YR+GF+++R EARQ
Sbjct: 59 EKQKVRRIYGILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N + VNI S ++K GD++ +REK++K I+ SLE W+ ++
Sbjct: 119 LVRHGHFTLNGRKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + I + L
Sbjct: 179 AFKGTVKAMPVREDITMPIQEQL 201
>gi|118579144|ref|YP_900394.1| 30S ribosomal protein S4 [Pelobacter propionicus DSM 2379]
gi|152112242|sp|A1ALW6.1|RS4_PELPD RecName: Full=30S ribosomal protein S4
gi|118501854|gb|ABK98336.1| SSU ribosomal protein S4P [Pelobacter propionicus DSM 2379]
Length = 208
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE ++LFLK R D KC + R PGQHG+ ++ S YG Q R
Sbjct: 1 MARYTGPSCRLCRRENMELFLKGDRCYTD-KCAIKRRNYPPGQHGQ-GRTKNSAYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG++E QFR YF E R+KG TGE +L LLE R DNVVYR+GF+S+RSE+RQ
Sbjct: 59 EKQKVRRIYGLMENQFRGYFAEADRMKGVTGENLLSLLERRLDNVVYRLGFASSRSESRQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N K V+I S + + GD+I +REK++K I ++L+ W+ +D
Sbjct: 119 LVRHGHFTLNGKKVDIPSIQTRVGDVIELREKSRKIVSINDALDAVARRGIPQWLELDRD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K+ P R + I + L
Sbjct: 179 AFKGNLKALPVREDVTTPIQEQL 201
>gi|388565198|ref|ZP_10151693.1| RNA polymerase subunit alpha [Hydrogenophaga sp. PBC]
gi|388267551|gb|EIK93046.1| RNA polymerase subunit alpha [Hydrogenophaga sp. PBC]
Length = 327
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 111/130 (85%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+N+LLKP+ I+V+ L +N AKV +EPFERGYG+TLGNALRRVLLSSM+G APTEV I+G
Sbjct: 2 LNNLLKPKSINVEQLSANRAKVTLEPFERGYGHTLGNALRRVLLSSMVGHAPTEVTIAGV 61
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
+HEYSS++GVQED+++++LNLKGV+ KL+NRD L+L+K G+ VV A+DI+ D+E+V
Sbjct: 62 VHEYSSIDGVQEDVVNLLLNLKGVVFKLHNRDEVTLSLRKDGEGVVTAADIQTPHDVEIV 121
Query: 316 NPNHIIAHLS 325
NP+H+IA LS
Sbjct: 122 NPDHVIATLS 131
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 85/101 (84%), Gaps = 2/101 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDS--SLEKVDPILLRPVDDLELTVRSANCL 385
EEA+R SA++LV+QL VFA LE + E S ++ DPILLRPVD+LELTVRSANCL
Sbjct: 209 EEAVRASAKILVEQLAVFAQLEGADLFTEAPQQRSSQQFDPILLRPVDELELTVRSANCL 268
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 269 KAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 309
>gi|372487027|ref|YP_005026592.1| DNA-directed RNA polymerase subunit alpha [Dechlorosoma suillum PS]
gi|359353580|gb|AEV24751.1| DNA-directed RNA polymerase, alpha subunit [Dechlorosoma suillum
PS]
Length = 324
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 106/127 (83%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKPRIIDV++L A+V+MEPFERGYG+TLGNALRR+LLSSM G APT+V I G LHE
Sbjct: 6 LLKPRIIDVQSLSPVQARVVMEPFERGYGHTLGNALRRILLSSMPGYAPTDVSIDGVLHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED++DI+LNLKG++ KL+ RD +L L K G+ +V ASDIE D+E++NP+
Sbjct: 66 YSTIDGVQEDVVDILLNLKGIVFKLHGRDEVVLKLSKDGEGIVRASDIETTHDVEIINPD 125
Query: 319 HIIAHLS 325
H+IAH+S
Sbjct: 126 HVIAHIS 132
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/99 (74%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIR +AR+L++QL+VFA LE T E ++ VDPILLRPVDDLELTVRSANCLKA
Sbjct: 209 EEAIRTAARILMEQLSVFADLEGTAPMVEAQKPVQ-VDPILLRPVDDLELTVRSANCLKA 267
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 268 ENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 306
>gi|332524581|ref|ZP_08400785.1| 50S ribosomal protein L17P [Rubrivivax benzoatilyticus JA2]
gi|332107894|gb|EGJ09118.1| 50S ribosomal protein L17P [Rubrivivax benzoatilyticus JA2]
Length = 130
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 99/118 (83%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM SL+R+E IKTT+PKAKELR VVEP++TL K TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMANSLIRHEAIKTTVPKAKELRAVVEPLITLGKTPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF RDR++ KLF+ELGPRY GGY RILKMGFRVGDNAPMAF+EL+++
Sbjct: 61 ANRRLAFDRTRDREVVTKLFNELGPRYATRPGGYTRILKMGFRVGDNAPMAFVELVDR 118
>gi|393760690|ref|ZP_10349497.1| 50S ribosomal protein L17 [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|424778050|ref|ZP_18205004.1| 50S ribosomal protein L17 [Alcaligenes sp. HPC1271]
gi|393161188|gb|EJC61255.1| 50S ribosomal protein L17 [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|422887110|gb|EKU29519.1| 50S ribosomal protein L17 [Alcaligenes sp. HPC1271]
Length = 128
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 99/118 (83%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL M RNM++SLL +E IKTTLPKAKELRRVVEP++TL+K TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMFRNMSVSLLTHEAIKTTLPKAKELRRVVEPLITLAKNPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR KLF GPRY + NGGY RILKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANRRLAFARLRDRDAVTKLFEVFGPRYQERNGGYTRILKMGFRQGDNAPMAFMELVDR 118
>gi|120609326|ref|YP_969004.1| DNA-directed RNA polymerase subunit alpha [Acidovorax citrulli
AAC00-1]
gi|326315415|ref|YP_004233087.1| DNA-directed RNA polymerase subunit alpha [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|158513025|sp|A1TJU2.1|RPOA_ACIAC RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|120587790|gb|ABM31230.1| DNA-directed RNA polymerase subunit alpha [Acidovorax citrulli
AAC00-1]
gi|323372251|gb|ADX44520.1| DNA-directed RNA polymerase subunit alpha [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 330
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 108/129 (83%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G L
Sbjct: 3 TNLLKPKTINVEQLGHNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVL 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ VV A DI+ D+E+VN
Sbjct: 63 HEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVN 122
Query: 317 PNHIIAHLS 325
P+H+IAHLS
Sbjct: 123 PDHVIAHLS 131
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 85/106 (80%), Gaps = 10/106 (9%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE +TP ++ DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGGELAAFDTPAGPRGSATF---DPILLRPVDELELTVR 266
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 267 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 312
>gi|91786412|ref|YP_547364.1| 50S ribosomal protein L17 [Polaromonas sp. JS666]
gi|119365889|sp|Q12G76.1|RL17_POLSJ RecName: Full=50S ribosomal protein L17
gi|91695637|gb|ABE42466.1| LSU ribosomal protein L17P [Polaromonas sp. JS666]
Length = 132
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 101/118 (85%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH HG RKLNRTS HRL MLRNM SLL++E+IKTTLPKAKELRRVVEP++TL+K+ T+
Sbjct: 1 MRHGHGLRKLNRTSEHRLAMLRNMMNSLLQHEVIKTTLPKAKELRRVVEPMITLAKEPTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF LRDR + +KLF+ELGPRY GGY RILKMGFRVGDNAPMA +EL+++
Sbjct: 61 ANKRLAFDRLRDRDMVVKLFAELGPRYKARPGGYTRILKMGFRVGDNAPMALVELVDR 118
>gi|338534521|ref|YP_004667855.1| 30S ribosomal protein S4 [Myxococcus fulvus HW-1]
gi|337260617|gb|AEI66777.1| 30S ribosomal protein S4 [Myxococcus fulvus HW-1]
Length = 208
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + ++LK R D KC ++ RP GQHG+ + S YG Q R
Sbjct: 1 MARYTASVCRICRRENLKMYLKGDRCYTD-KCAIERRPYPPGQHGQ-GRVKFSGYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QFR Y+ + KGKTGE +L+ LE R DNVV+RMGF+ TR+EARQ
Sbjct: 59 EKQKVKRMYGLLENQFRGYYHRASAAKGKTGENLLQQLELRLDNVVFRMGFADTRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN + VNI S+ +KPG + V EK++K RI+ +LE + WI++D K
Sbjct: 119 LVRHGHFQVNGRKVNIPSFAVKPGTAVEVVEKSRKVLRISEALETVDRRGVPQWISLDKK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G + PNR + I++ L
Sbjct: 179 AFKGTVTTVPNREDLTMPISEQL 201
>gi|14278533|pdb|1I94|D Chain D, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
gi|14278554|pdb|1I95|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
gi|14278575|pdb|1I96|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
gi|14278597|pdb|1I97|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
gi|20663889|pdb|1J5E|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
gi|27065879|pdb|1N32|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
gi|27065906|pdb|1N33|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
gi|27065933|pdb|1N34|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
gi|27065959|pdb|1N36|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
gi|34811532|pdb|1PNS|D Chain D, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
gi|34811588|pdb|1PNX|D Chain D, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
gi|56966326|pdb|1VOQ|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966379|pdb|1VOS|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966432|pdb|1VOV|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966485|pdb|1VOX|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966538|pdb|1VOZ|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|149241278|pdb|2E5L|D Chain D, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
gi|224510686|pdb|3FIC|D Chain D, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
gi|226887632|pdb|2ZM6|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
gi|300508608|pdb|3MR8|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
gi|300508663|pdb|3MS0|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
gi|322812553|pdb|3PYN|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
gi|322812606|pdb|3PYQ|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
gi|322812659|pdb|3PYS|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
gi|322812712|pdb|3PYU|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome.
gi|380764245|pdb|3TVF|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
gi|380764270|pdb|3TVG|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
gi|380764347|pdb|3UYD|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
gi|380764403|pdb|3UYF|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
gi|380764523|pdb|3UZ3|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
gi|380764548|pdb|3UZ4|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
gi|380764574|pdb|3UZ6|G Chain G, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
gi|380764600|pdb|3UZ7|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
gi|380764720|pdb|3UZG|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
gi|380764776|pdb|3UZI|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
gi|380764831|pdb|3UZL|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
gi|380764857|pdb|3UZM|G Chain G, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
gi|395759337|pdb|4AQY|D Chain D, Structure Of Ribosome-Apramycin Complexes
gi|451928692|pdb|4G5K|G Chain G, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
gi|451928745|pdb|4G5M|G Chain G, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
gi|451928798|pdb|4G5T|G Chain G, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
gi|451928852|pdb|4G5V|G Chain G, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B
Length = 208
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 130/202 (64%), Gaps = 4/202 (1%)
Query: 2 ARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFRE 58
RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + RE
Sbjct: 1 GRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQK++R+YGI E+QFR F E ++ KG TG + L LLESR DNVVYR+GF+ +R +ARQL
Sbjct: 60 KQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+ H VN + V++ SY+++PGD I+V EK++ I +LE + W+++D +
Sbjct: 120 VRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEG 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 MKGKFLRLPDREDLALPVNEQL 201
>gi|365920164|ref|ZP_09444514.1| ribosomal protein S4 [Cardiobacterium valvarum F0432]
gi|364578434|gb|EHM55638.1| ribosomal protein S4 [Cardiobacterium valvarum F0432]
Length = 173
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 117/163 (71%), Gaps = 1/163 (0%)
Query: 38 PGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLES 97
PGQHG + R SDYG Q REKQK+KR+YG+LE+QFR Y+ + ++ KG TGE +L+ LE
Sbjct: 5 PGQHG-VRRGRLSDYGNQLREKQKLKRIYGVLERQFRNYYKKASQRKGTTGENLLQFLEQ 63
Query: 98 RFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIA 157
R DNVVYRMG+ +TR+E+RQL+SH A VN K V IASY++ DI++V EK++KQ RI
Sbjct: 64 RLDNVVYRMGYGATRAESRQLVSHGAIEVNGKRVTIASYQVNAEDIVAVCEKSRKQLRIQ 123
Query: 158 NSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
+SLE++ WI VD KM G+FK P R + ++DIN+ L
Sbjct: 124 SSLEVASQRGFVDWIEVDTAKMSGLFKRVPERIDLSSDINESL 166
>gi|226939212|ref|YP_002794283.1| DNA-directed RNA polymerase subunit alpha [Laribacter hongkongensis
HLHK9]
gi|254765253|sp|C1DAU3.1|RPOA_LARHH RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|226714136|gb|ACO73274.1| RpoA [Laribacter hongkongensis HLHK9]
Length = 327
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/132 (62%), Positives = 107/132 (81%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N ++ LKPR+IDV+ + + A+V MEPFERGY YTLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSASEFLKPRLIDVQPVSATQARVAMEPFERGYAYTLGNALRRILLSSMPGFAPTEVSIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+L+GV+ED++DI+LNLKGV+ KL+ RD +L LKK G+ V ASDI+L D+E
Sbjct: 63 GVLHEYSALDGVREDVVDILLNLKGVVFKLHGRDSVLLTLKKEGEGAVRASDIDLPHDVE 122
Query: 314 LVNPNHIIAHLS 325
+VNP+H+I HL+
Sbjct: 123 VVNPDHVICHLA 134
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 87/99 (87%), Gaps = 1/99 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEA+R +AR+L+DQL++FA L+ T V+ ++ +VDPILLRPVDDLELTVRSANCLKA
Sbjct: 212 EEAVRSAARILIDQLSIFADLQGTTVEV-VEERAPQVDPILLRPVDDLELTVRSANCLKA 270
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 271 ENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 309
>gi|320451274|ref|YP_004203370.1| 30S ribosomal protein S4 [Thermus scotoductus SA-01]
gi|320151443|gb|ADW22821.1| 30S ribosomal protein S4 [Thermus scotoductus SA-01]
Length = 209
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 130/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRTRRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E QFR F E +R KG TG + L LLESR DNVVYR+GF+++R +ARQ
Sbjct: 60 EKQKLRRIYGISETQFRNLFEEASRKKGVTGTVFLGLLESRLDNVVYRLGFAASRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H VN + V++ +Y++KPGD I++ E ++ I +LE + W+++D +
Sbjct: 120 MVRHGHITVNGRRVDLPAYRVKPGDEIAIAEGSRNLAFIRENLEAMKGRKVGPWLSLDVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 GMKGKFLRLPDREDLALPVNEQL 202
>gi|10835588|pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
gi|13096397|pdb|1HR0|D Chain D, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
gi|14278013|pdb|1GIX|G Chain G, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
gi|15826123|pdb|1JGO|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
gi|15826148|pdb|1JGP|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
gi|15826173|pdb|1JGQ|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
gi|28373702|pdb|1ML5|G Chain G, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
gi|110591326|pdb|2F4V|D Chain D, 30s Ribosome + Designer Antibiotic
Length = 209
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 130/203 (64%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E+QFR F E ++ KG TG + L LLESR DNVVYR+GF+ +R +ARQ
Sbjct: 60 EKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H VN + V++ SY+++PGD I+V EK++ I +LE + W+++D +
Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A + + L
Sbjct: 180 GMKGKFLRLPDREDLALPVQENL 202
>gi|410696312|gb|AFV75380.1| ribosomal protein S4, bacterial/organelle type [Thermus oshimai
JL-2]
Length = 209
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M RYIGP +LCRREG+ L+LK R KC ++ RP GQHG+ R SDY + R
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YGI E QFR F E +R KG TG + L LLESR DNVVYR+GF+ +R +ARQ
Sbjct: 60 EKQKLRRIYGISETQFRNLFEEASRKKGVTGTVFLGLLESRLDNVVYRLGFAQSRRQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H VN + V++ +Y++KPGD I++ E ++ I +LE + W+++D +
Sbjct: 120 MVRHGHITVNGRRVDLPAYRVKPGDEIAIAEGSRNLDFIRQNLEAMKGRKVGPWLSLDVE 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
M+G F P+R + A +N+ L
Sbjct: 180 AMKGKFLRLPDREDLALPVNEQL 202
>gi|257459219|ref|ZP_05624338.1| ribosomal protein S4 [Campylobacter gracilis RM3268]
gi|257443604|gb|EEV18728.1| ribosomal protein S4 [Campylobacter gracilis RM3268]
Length = 208
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 128/194 (65%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+DLF+K RR L K L RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYTGPVEKLERRLGVDLFMKGERR-LAGKSALLKRPYAPGQHGQ-RRAKLSEYGSQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG I+++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARREGNTGAILVQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K V+I SY ++ G I V EK+K +I+ +L+L+ + +W+ V+ +
Sbjct: 119 LVTHGHILVDGKRVDIPSYSVRAGQKIEVIEKSKNNPQISRALDLTAQTGIVAWVDVEKE 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F P R E
Sbjct: 179 KRYGIFSRVPEREE 192
>gi|257095014|ref|YP_003168655.1| 50S ribosomal protein L17 [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047538|gb|ACV36726.1| ribosomal protein L17 [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 132
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR G RKLNRTS+HRL MLRNMT+SLLR E IKTTLPKAKELRRVVEPI+TL KK +L
Sbjct: 1 MRHRLGLRKLNRTSAHRLAMLRNMTVSLLREETIKTTLPKAKELRRVVEPIITLGKKPSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF LRDR + +K+F ELG RY NGGY+RILK GFR GDNAPMAF++LL+Q
Sbjct: 61 ANRRLAFDRLRDRDMVVKVFDELGLRYATRNGGYLRILKCGFRDGDNAPMAFVQLLDQ 118
>gi|412340640|ref|YP_006969395.1| 50S ribosomal protein L17 [Bordetella bronchiseptica 253]
gi|408770474|emb|CCJ55268.1| 50S ribosomal protein L17 [Bordetella bronchiseptica 253]
Length = 131
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHRL M RNM +SLL +E IKTTLPKAKELRRV+EP++TL K+ TL
Sbjct: 1 MRHGNGLRKLNRTSSHRLAMFRNMAVSLLTHEAIKTTLPKAKELRRVIEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPRY NGGY R+LKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQGDNAPMAFMELVDR 118
>gi|393779791|ref|ZP_10368026.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 412 str. F0487]
gi|429746518|ref|ZP_19279866.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 380 str. F0488]
gi|429757012|ref|ZP_19289570.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 324 str. F0483]
gi|392609748|gb|EIW92551.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 412 str. F0487]
gi|429166124|gb|EKY08131.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 380 str. F0488]
gi|429169786|gb|EKY11523.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 324 str. F0483]
Length = 201
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MARY GPK K+ R+ G +F +S + K + PGQHG ++ S+Y Q +EK
Sbjct: 1 MARYTGPKTKIARKFGEAIF--GDDKSFERK---NYPPGQHGLARRRAKRSEYAIQLQEK 55
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK K YGILEKQF + + R K TGE++L+L ESR DNVVYRMG + TRS ARQL+
Sbjct: 56 QKAKYTYGILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLV 115
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR VN IVNI SY +KPGD++ VREK+K + I NS L+ HST + WIT + +K+
Sbjct: 116 SHRHITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVIENS--LAAHSTVYEWITWNPEKL 173
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG F + P R + +I + L
Sbjct: 174 EGTFVAVPQRIQIPENIKEQL 194
>gi|375103771|ref|ZP_09750032.1| ribosomal protein L17 [Burkholderiales bacterium JOSHI_001]
gi|374664502|gb|EHR69287.1| ribosomal protein L17 [Burkholderiales bacterium JOSHI_001]
Length = 133
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTS HR ML+NM +SLL++E IKTTLPKAKELRRVVEP++TL+K +++
Sbjct: 1 MRHRHGLRKLNRTSEHRQAMLQNMCVSLLKHEAIKTTLPKAKELRRVVEPLITLAKISSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILKMGFRVGDNAPMAF+EL+++
Sbjct: 61 ANRRLAFARLRDRDVVTKLFNELGPRYNARPGGYTRILKMGFRVGDNAPMAFVELVDR 118
>gi|301628933|ref|XP_002943603.1| PREDICTED: DNA-directed RNA polymerase subunit alpha-like [Xenopus
(Silurana) tropicalis]
Length = 332
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 106/129 (82%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+ I V+ LG N AKV +EPFERGYG+TLGNALRRVLLSSM+G A TEV I G L
Sbjct: 3 TNLLKPKTIQVEQLGHNRAKVELEPFERGYGHTLGNALRRVLLSSMVGYAATEVTIVGVL 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSS++GVQED+++I+LNLKGV+ KLYNRD L+L+K G+ VV A DI+ D+E++N
Sbjct: 63 HEYSSIDGVQEDVVNILLNLKGVVFKLYNRDEVTLSLRKDGEGVVTARDIQTPHDVEIIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHLS
Sbjct: 123 PDHVIAHLS 131
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 84/105 (80%), Gaps = 6/105 (5%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKEL------DSSLEKVDPILLRPVDDLELTVRS 381
EEA+R SA++LV+QL VFA LE + L SS DPILLRPVD+LELTVRS
Sbjct: 210 EEAVRASAKILVEQLAVFAQLEGGDIDGMLIGSGASRSSATTFDPILLRPVDELELTVRS 269
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 314
>gi|398804842|ref|ZP_10563832.1| ribosomal protein L17 [Polaromonas sp. CF318]
gi|398093233|gb|EJL83622.1| ribosomal protein L17 [Polaromonas sp. CF318]
Length = 133
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH HG RKLNRTS HRL MLRNM SLL++E+IKTTLPKAKELRRVVEP++TL K+ TL
Sbjct: 1 MRHGHGLRKLNRTSEHRLAMLRNMMNSLLQHEVIKTTLPKAKELRRVVEPMITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF LRDR + +KLF+E+GPRY GGY RILKMGFRVGDNAPMA +EL+++
Sbjct: 61 ANKRLAFDRLRDRDMVVKLFAEIGPRYKARPGGYTRILKMGFRVGDNAPMALVELVDR 118
>gi|121603261|ref|YP_980590.1| 50S ribosomal protein L17 [Polaromonas naphthalenivorans CJ2]
gi|166216199|sp|A1VJ41.1|RL17_POLNA RecName: Full=50S ribosomal protein L17
gi|120592230|gb|ABM35669.1| LSU ribosomal protein L17P [Polaromonas naphthalenivorans CJ2]
Length = 133
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 99/118 (83%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH HG RKLNRTS HRL MLRNM SLL++E IKTTLPKAKELRRVVEP++TL+K TL
Sbjct: 1 MRHGHGLRKLNRTSEHRLAMLRNMMNSLLQHEAIKTTLPKAKELRRVVEPMITLAKTPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF LRDR + +KLF+ELGPRY GGY RILKMGFRVGDNAPMA +EL+++
Sbjct: 61 ANKRLAFDRLRDRDMVVKLFAELGPRYQTRPGGYTRILKMGFRVGDNAPMALVELVDR 118
>gi|89902964|ref|YP_525435.1| DNA-directed RNA polymerase subunit alpha [Rhodoferax ferrireducens
T118]
gi|119366714|sp|Q21QP9.1|RPOA_RHOFD RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|89347701|gb|ABD71904.1| DNA-directed RNA polymerase, alpha subunit [Rhodoferax
ferrireducens T118]
Length = 329
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 108/129 (83%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKP+ I+V+ +G N AKV +EPFERGYG+TLGNALRRVLL+SM G A TEV I+G L
Sbjct: 3 NSLLKPKAINVEQMGGNRAKVALEPFERGYGHTLGNALRRVLLASMPGYAATEVTIAGVL 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ +V ASDI+ D+E++N
Sbjct: 63 HEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGLVTASDIQTPHDVEIIN 122
Query: 317 PNHIIAHLS 325
P+H+IAHLS
Sbjct: 123 PDHVIAHLS 131
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 85/106 (80%), Gaps = 11/106 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE +TP + + DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGSELAAFDTPSPR----GSTQFDPILLRPVDELELTVR 265
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 311
>gi|375255287|ref|YP_005014454.1| 30S ribosomal protein S4 [Tannerella forsythia ATCC 43037]
gi|363406798|gb|AEW20484.1| ribosomal protein S4 [Tannerella forsythia ATCC 43037]
Length = 201
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 126/200 (63%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK K+ R+ G +F A + L K + PGQHG +TS+YG Q REKQ
Sbjct: 1 MARYTGPKTKIARKFGEAIF--GADKVLSKK---NYPPGQHGNNRRRKTSEYGVQLREKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LEKQFR F + +R KG TGE++L+LLESR DNVV+R+G + TR ARQL+S
Sbjct: 56 KAKYTYGVLEKQFRNMFEKASRSKGITGEVLLQLLESRLDNVVFRLGLAPTRDAARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR +V+ K+VNI SY +KPG II VREK+K I+ +L HS + WI + M
Sbjct: 116 HRHIVVDGKVVNIPSYSVKPGQIIGVREKSKSLEVISEALSGFNHSK-YPWIEWEQSAMN 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F P R++ +I + L
Sbjct: 175 GKFLHLPERADIPENIKEQL 194
>gi|429753391|ref|ZP_19286198.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429173672|gb|EKY15184.1| ribosomal protein S4 [Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 201
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MARY GPK K+ R+ G +F +S + K + PGQHG ++ S+Y Q +EK
Sbjct: 1 MARYTGPKTKIARKFGEAIF--GDDKSFERK---NYPPGQHGLARRRAKRSEYATQLQEK 55
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK K YGILEKQF + + R K TGE++L+L ESR DNVVYRMG + TRS ARQL+
Sbjct: 56 QKAKYTYGILEKQFHNLYEKAKRSKHITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLV 115
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR VN +IVNI SY +KPGD++ VREK+K + I NS L+ HST + WIT + +K+
Sbjct: 116 SHRHITVNGEIVNIPSYSLKPGDVVGVREKSKSLSVIENS--LAAHSTVYEWITWNPEKL 173
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG F + P R + +I + L
Sbjct: 174 EGTFVAVPQRIQIPENIKEQL 194
>gi|198282663|ref|YP_002218984.1| 30S ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667358|ref|YP_002424856.1| 30S ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|226697790|sp|B7J4A3.1|RS4_ACIF2 RecName: Full=30S ribosomal protein S4
gi|226697791|sp|B5EM98.1|RS4_ACIF5 RecName: Full=30S ribosomal protein S4
gi|198247184|gb|ACH82777.1| ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519571|gb|ACK80157.1| ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 208
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 136/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MA+Y GP +LCRREG LFLK + KC + +R PGQHG+ G R S+YG Q R
Sbjct: 1 MAKYTGPSCRLCRREGGKLFLK-GEKCFSDKCPVSIRAYAPGQHGQRRG-RVSEYGGQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFRRYF ++ +G TGE++L+ LE R DNV YR+GF ++R+EARQ
Sbjct: 59 EKQKIRRIYGVLEGQFRRYFQRASQARGVTGELLLRFLELRLDNVAYRLGFGASRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN + V+I SY+++ GD++SV E A+ RIA S+E + W+++D
Sbjct: 119 VVRHGHILVNGRRVDIPSYQVRAGDVVSVAEAARTHIRIAASVEATAGRGFPEWVSMDTT 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+++ K+ P R + A D+N+ +
Sbjct: 179 ELKATIKAVPVREDMAPDLNEQV 201
>gi|302337501|ref|YP_003802707.1| 30S ribosomal protein S4 [Spirochaeta smaragdinae DSM 11293]
gi|301634686|gb|ADK80113.1| ribosomal protein S4 [Spirochaeta smaragdinae DSM 11293]
Length = 211
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 127/202 (62%), Gaps = 8/202 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY+GP+ +LCR E LFLK R KC + + PG+ R + SDYG Q R
Sbjct: 1 MARYVGPQCRLCRAEKTKLFLK-GERCHTGKCPIAKKKNPPGKGPRFRARKMSDYGIQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++RMYG+LEKQF+ F+E RL+GKTGE ++ LLE R DNVVYR+ F+++R +ARQ
Sbjct: 60 EKQKLRRMYGLLEKQFKLTFVEAERLRGKTGENLIILLERRLDNVVYRLRFANSRKQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH LVN K V I SY ++ GD I +RE +KK I ++L+ S WI +D
Sbjct: 120 LVSHGHILVNGKRVTIPSYVVRQGDEIEIREASKKMVVIKDALKEYTKSGVMPWIMLDPD 179
Query: 178 KMEGVFKSEPNRSEFANDINDL 199
M+G + P R ND+ DL
Sbjct: 180 AMKGSLSAIPRR----NDVTDL 197
>gi|108758664|ref|YP_631524.1| 30S ribosomal protein S4 [Myxococcus xanthus DK 1622]
gi|122981072|sp|Q1D749.1|RS4A_MYXXD RecName: Full=30S ribosomal protein S4 A
gi|108462544|gb|ABF87729.1| ribosomal protein S4 [Myxococcus xanthus DK 1622]
Length = 208
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + ++LK R D KC ++ RP GQHG+ + S YG Q R
Sbjct: 1 MARYTASACRICRRENLKMYLKGDRCYTD-KCAIERRPYPPGQHGQ-GRVKFSGYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKRMYG+LE QFR Y+ + KGKTG+ +L+ LE R DNVV+RMGF+ TR+EARQ
Sbjct: 59 EKQKVKRMYGLLENQFRGYYHRASAAKGKTGDNLLQQLELRLDNVVFRMGFADTRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN + VNI S+ +KPG + V EK++K RI+ +LE + WI++D K
Sbjct: 119 LVRHGHFQVNGRKVNIPSFAVKPGTAVEVVEKSRKVLRISEALETVDRRGIPQWISLDKK 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G + PNR + I++ L
Sbjct: 179 AFKGTVTTVPNREDLTMPISEQL 201
>gi|291613262|ref|YP_003523419.1| DNA-directed RNA polymerase subunit alpha [Sideroxydans
lithotrophicus ES-1]
gi|291583374|gb|ADE11032.1| DNA-directed RNA polymerase, alpha subunit [Sideroxydans
lithotrophicus ES-1]
Length = 323
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 109/129 (84%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N+LLKPRIIDV+ + A+V+MEPFERGYG+TLGNALRRVLLSSM G A TEV I+G L
Sbjct: 4 NNLLKPRIIDVQRSSATQARVVMEPFERGYGHTLGNALRRVLLSSMPGYAVTEVKIAGVL 63
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSS++GVQED+++I+LNLKG++LKL+N A L+L+K G VV A+DIE+ +D E++N
Sbjct: 64 HEYSSIDGVQEDVVEILLNLKGLVLKLHNSREATLHLRKSGAGVVTAADIEVGADTEVIN 123
Query: 317 PNHIIAHLS 325
PNH+IAHL+
Sbjct: 124 PNHVIAHLA 132
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEAIR +AR+L+DQL+VFAALE TP E + KVDP+LLRPVDDLELT RS+NCL
Sbjct: 208 DPEEAIRYAARILMDQLSVFAALEGTPAPVEKPQT-PKVDPMLLRPVDDLELTPRSSNCL 266
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KA++IH IGDLIQ +E +LLRTPNLGRKSLNEIK++LA G
Sbjct: 267 KAQSIHYIGDLIQNTEADLLRTPNLGRKSLNEIKQVLAEHG 307
>gi|82701925|ref|YP_411491.1| DNA-directed RNA polymerase subunit alpha [Nitrosospira multiformis
ATCC 25196]
gi|119366704|sp|Q2YAX2.1|RPOA_NITMU RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|82409990|gb|ABB74099.1| DNA-directed RNA polymerase subunit alpha [Nitrosospira multiformis
ATCC 25196]
Length = 334
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 105/129 (81%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N L PRIIDV+ + HA++ MEPFERGYG+TLGNALRR+LLSSM G APTEV ISG +
Sbjct: 4 NTFLTPRIIDVQNISPLHARITMEPFERGYGHTLGNALRRILLSSMPGFAPTEVQISGVV 63
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYS+L+GVQED++DI+LNLKG++LKL+NR A+L L K G+ V A DIE D+E++N
Sbjct: 64 HEYSALDGVQEDVVDILLNLKGIVLKLHNRTEALLTLSKKGEGTVTAGDIEGGHDVEIIN 123
Query: 317 PNHIIAHLS 325
P+H++AHL+
Sbjct: 124 PDHVVAHLT 132
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEAIR +A+VLV+QL+VFA L+ TP+ E L ++DP+LLRPVDDLELTVRSANCL
Sbjct: 208 DPEEAIRYAAKVLVEQLSVFADLKGTPLPVE-QPKLPQIDPVLLRPVDDLELTVRSANCL 266
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 267 KAENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASRG 307
>gi|315225425|ref|ZP_07867239.1| 30S ribosomal protein S4 [Capnocytophaga ochracea F0287]
gi|420159731|ref|ZP_14666529.1| ribosomal protein S4 [Capnocytophaga ochracea str. Holt 25]
gi|314944698|gb|EFS96733.1| 30S ribosomal protein S4 [Capnocytophaga ochracea F0287]
gi|394761782|gb|EJF44110.1| ribosomal protein S4 [Capnocytophaga ochracea str. Holt 25]
Length = 201
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 127/201 (63%), Gaps = 8/201 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MARY GPK K+ R+ G +F +S + K + PGQHG ++ S+Y Q +EK
Sbjct: 1 MARYTGPKTKIARKFGEAIF--GDDKSFERK---NYPPGQHGLARRRAKRSEYAIQLQEK 55
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK K YGILEKQF + + R K TGE++L+L ESR DNVVYRMG + TRS ARQL+
Sbjct: 56 QKAKYTYGILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLV 115
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR VN IVNI SY +KPGD++ VREK+K + I NS L+ HS + WIT + +KM
Sbjct: 116 SHRHITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVIENS--LAAHSAVYEWITWNPEKM 173
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG F + P R + +I + L
Sbjct: 174 EGTFVAVPQRIQIPENIKEQL 194
>gi|213962933|ref|ZP_03391193.1| ribosomal protein S4 [Capnocytophaga sputigena Capno]
gi|213954590|gb|EEB65912.1| ribosomal protein S4 [Capnocytophaga sputigena Capno]
Length = 201
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MARY GPK K+ R+ G +F +S + K + PGQHG ++ S+Y Q +EK
Sbjct: 1 MARYTGPKTKIARKFGEAIF--GDDKSFERK---NYPPGQHGLARRRAKRSEYAIQLQEK 55
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK K YGILEKQF + + R K TGE++L+L ESR DNVVYRMG + TRS ARQL+
Sbjct: 56 QKAKYTYGILEKQFHNLYEKAKRSKHITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLV 115
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR VN IVNI SY +KPGD++ VREK+K + I NS L+ HST + WIT + +K+
Sbjct: 116 SHRHITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVIENS--LAAHSTVYEWITWNPEKL 173
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG F + P R + +I + L
Sbjct: 174 EGTFVAVPQRIQIPENIKEQL 194
>gi|239818003|ref|YP_002946913.1| DNA-directed RNA polymerase subunit alpha [Variovorax paradoxus
S110]
gi|319796380|ref|YP_004158020.1| DNA-directed RNA polymerase subunit alpha [Variovorax paradoxus
EPS]
gi|398808341|ref|ZP_10567206.1| DNA-directed RNA polymerase, alpha subunit [Variovorax sp. CF313]
gi|259494174|sp|C5CQ75.1|RPOA_VARPS RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|239804580|gb|ACS21647.1| DNA-directed RNA polymerase, alpha subunit [Variovorax paradoxus
S110]
gi|315598843|gb|ADU39909.1| DNA-directed RNA polymerase, alpha subunit [Variovorax paradoxus
EPS]
gi|398087858|gb|EJL78436.1| DNA-directed RNA polymerase, alpha subunit [Variovorax sp. CF313]
Length = 329
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 107/127 (84%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+ I V+ L +N AKV +EPFERGYG+TLGNALRRVLLSSM+G + TEV I+G LHE
Sbjct: 5 LLKPKTIQVEQLAANKAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAGVLHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ VLASDI+ D+E++NP+
Sbjct: 65 YSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVLASDIQTPHDVEIINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 86/106 (81%), Gaps = 11/106 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE + P + S ++ DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGGELAAFDAPAPR----SAQQFDPILLRPVDELELTVR 265
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 311
>gi|225024813|ref|ZP_03714005.1| hypothetical protein EIKCOROL_01700 [Eikenella corrodens ATCC
23834]
gi|224942416|gb|EEG23625.1| hypothetical protein EIKCOROL_01700 [Eikenella corrodens ATCC
23834]
Length = 325
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/134 (62%), Positives = 104/134 (77%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV L + AKV MEPFERG+GYTLGNALRR+LLSSM G APTEV+I
Sbjct: 3 NSTYEFLKPRQIDVDALSATRAKVFMEPFERGFGYTLGNALRRILLSSMNGFAPTEVVID 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
GALHEYS+L+GVQED++DI+LN+KGV+ KL RD ++L K G VV A+D+EL D+E
Sbjct: 63 GALHEYSTLDGVQEDVVDILLNIKGVVFKLQGRDSVQVSLNKSGSGVVTAADLELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I LSDN
Sbjct: 123 VINPEHVICRLSDN 136
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R++AR+L+DQ++VFA LE TPV++ + + +DPILLRPVDDLELTVRSANCL
Sbjct: 208 DPEEAVRRAARILIDQMSVFADLEGTPVEESKEEA-PPIDPILLRPVDDLELTVRSANCL 266
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 267 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 307
>gi|149926593|ref|ZP_01914853.1| Ribosomal protein L17 [Limnobacter sp. MED105]
gi|149824522|gb|EDM83738.1| Ribosomal protein L17 [Limnobacter sp. MED105]
Length = 132
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 101/121 (83%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL M RNMT +LLR+E+IKTTLPKAKELR++ EPI+T+ K TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMFRNMTNALLRHEVIKTTLPKAKELRKIAEPIITMGKSPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTK 549
+NKRLAFS LRDR++ +KLF E+GPRY GGY+R+LK GFR GDNAPMA +EL+++ +
Sbjct: 61 ANKRLAFSRLRDREMVVKLFDEIGPRYAARPGGYMRVLKFGFRKGDNAPMALVELVDRPE 120
Query: 550 N 550
Sbjct: 121 T 121
>gi|293602597|ref|ZP_06685040.1| 50S ribosomal protein L17 [Achromobacter piechaudii ATCC 43553]
gi|359801012|ref|ZP_09303534.1| 50S ribosomal protein L17 [Achromobacter arsenitoxydans SY8]
gi|421486513|ref|ZP_15934057.1| 50S ribosomal protein L17 [Achromobacter piechaudii HLE]
gi|292818969|gb|EFF78007.1| 50S ribosomal protein L17 [Achromobacter piechaudii ATCC 43553]
gi|359361014|gb|EHK62789.1| 50S ribosomal protein L17 [Achromobacter arsenitoxydans SY8]
gi|400195217|gb|EJO28209.1| 50S ribosomal protein L17 [Achromobacter piechaudii HLE]
Length = 130
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHRL M RNM +SL+ +E IKTTLPKAKELRRV+EP++TL K+ TL
Sbjct: 1 MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVIEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPRY NGGY R+LKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFARLRDRDAVVKLFAEIGPRYAARNGGYTRVLKMGFRQGDNAPMAFMELVDR 118
>gi|187930337|ref|YP_001900824.1| 50S ribosomal protein L17 [Ralstonia pickettii 12J]
gi|226712199|sp|B2UEJ2.1|RL17_RALPJ RecName: Full=50S ribosomal protein L17
gi|187727227|gb|ACD28392.1| ribosomal protein L17 [Ralstonia pickettii 12J]
Length = 132
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 103/118 (87%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SLL++E+IKTT+PKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLLQHELIKTTVPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPR+ GGY RILK GFR GDNAPMA +ELL++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFNELGPRFATRPGGYTRILKFGFRQGDNAPMALVELLDR 118
>gi|452126809|ref|ZP_21939392.1| 50S ribosomal protein L17 [Bordetella holmesii F627]
gi|452130182|ref|ZP_21942755.1| 50S ribosomal protein L17 [Bordetella holmesii H558]
gi|451921904|gb|EMD72049.1| 50S ribosomal protein L17 [Bordetella holmesii F627]
gi|451923042|gb|EMD73186.1| 50S ribosomal protein L17 [Bordetella holmesii H558]
Length = 131
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHRL M RNM +SL+ +E IKTTLPKAKELRRV+EP++TL K+ TL
Sbjct: 1 MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVIEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPRY NGGY R+LKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQGDNAPMAFMELVDR 118
>gi|386761341|ref|YP_006234976.1| 30S ribosomal protein S4 [Helicobacter cinaedi PAGU611]
gi|385146357|dbj|BAM11865.1| 30S ribosomal protein S4 [Helicobacter cinaedi PAGU611]
Length = 208
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG+ G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYGPGQHGQKRG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F E R +G TGE +++++E R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKIMYGVSEKQFRALFREANRQEGNTGENLVRIIEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++H LVN K V+I SY +KPG I V+EK+K ++A +++L+ + W+ VD +
Sbjct: 119 FVTHGHILVNGKRVDIPSYMVKPGQKIEVKEKSKNNPQVARAIDLTAQTGIVPWVDVDKE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKFGIFTRFPQREEVVIPIEERL 201
>gi|336453193|ref|YP_004607659.1| 30S ribosomal protein S4 [Helicobacter bizzozeronii CIII-1]
gi|335333220|emb|CCB79947.1| SSU ribosomal protein S4p (S9e) [Helicobacter bizzozeronii CIII-1]
Length = 208
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G KL RR GI L LK RR L K +D R PGQHG+ G + SDYG Q R
Sbjct: 1 MARYRGAVEKLERRFGISLALKGERR-LSGKSAVDKRAYGPGQHGQRRG-KISDYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR FIE R++G TGE +++LLE R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKAMYGISEKQFRSIFIEANRMEGNTGENLVRLLERRLDNVVYRMGFATTRSFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I S IK G + +REK+K+ +I ++ELS WI VD
Sbjct: 119 LVTHGHVLVDGKRMDIPSAFIKSGQKVEIREKSKQNAQIMRAVELSNQVGIVPWIDVDQN 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ GVF P R E I + L
Sbjct: 179 QKMGVFTRYPERDEVVIPIEERL 201
>gi|160896495|ref|YP_001562077.1| DNA-directed RNA polymerase subunit alpha [Delftia acidovorans
SPH-1]
gi|333917067|ref|YP_004490799.1| DNA-directed RNA polymerase subunit alpha [Delftia sp. Cs1-4]
gi|238687179|sp|A9BRX5.1|RPOA_DELAS RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|160362079|gb|ABX33692.1| DNA-directed RNA polymerase, alpha subunit [Delftia acidovorans
SPH-1]
gi|333747267|gb|AEF92444.1| DNA-directed RNA polymerase, alpha subunit [Delftia sp. Cs1-4]
Length = 332
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 109/128 (85%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG N AKV++EPFERGYG+TLGNALRRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKTINVEQLGHNRAKVVLEPFERGYGHTLGNALRRVLLSSMVGYAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
EYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ VV A DI+ D+E++NP
Sbjct: 64 EYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIINP 123
Query: 318 NHIIAHLS 325
+H+IA+LS
Sbjct: 124 DHVIANLS 131
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 84/105 (80%), Gaps = 6/105 (5%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDS------SLEKVDPILLRPVDDLELTVRS 381
E+A+R SA++LV+QL VFA L+ + D+ + DPILLRPVD+LELTVRS
Sbjct: 210 EDAVRASAKILVEQLAVFAQLDGGDIASVFDAPAGGRGAATAFDPILLRPVDELELTVRS 269
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 314
>gi|311109575|ref|YP_003982428.1| 50S ribosomal protein L17 [Achromobacter xylosoxidans A8]
gi|422323465|ref|ZP_16404504.1| 50S ribosomal protein L17 [Achromobacter xylosoxidans C54]
gi|423014739|ref|ZP_17005460.1| 50S ribosomal protein L17 [Achromobacter xylosoxidans AXX-A]
gi|310764264|gb|ADP19713.1| ribosomal protein L17 [Achromobacter xylosoxidans A8]
gi|317401575|gb|EFV82204.1| 50S ribosomal protein L17 [Achromobacter xylosoxidans C54]
gi|338782355|gb|EGP46730.1| 50S ribosomal protein L17 [Achromobacter xylosoxidans AXX-A]
Length = 130
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHRL M RNM +SL+ +E IKTTLPKAKELRRV+EP++TL K+ TL
Sbjct: 1 MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVIEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPRY NGGY R+LKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFARLRDRDAVVKLFAEIGPRYAARNGGYTRVLKMGFRQGDNAPMAFMELVDR 118
>gi|313143763|ref|ZP_07805956.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818]
gi|313128794|gb|EFR46411.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818]
gi|396078481|dbj|BAM31857.1| 30S ribosomal protein S4 [Helicobacter cinaedi ATCC BAA-847]
Length = 208
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/203 (48%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG+ G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYGPGQHGQKRG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F E R +G TGE +++++E R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKIMYGVSEKQFRALFREANRQEGNTGENLVRIIEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY +KPG I V+EK+K ++ +++L+ + W+ VD +
Sbjct: 119 LVTHGHILVNGKHVDIPSYMVKPGQKIEVKEKSKNNPQVVRAIDLTAQTGIVPWVDVDKE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKFGIFTRFPQREEVVIPIEERL 201
>gi|33594508|ref|NP_882152.1| 50S ribosomal protein L17 [Bordetella pertussis Tohama I]
gi|33594779|ref|NP_882422.1| 50S ribosomal protein L17 [Bordetella parapertussis 12822]
gi|33599051|ref|NP_886611.1| 50S ribosomal protein L17 [Bordetella bronchiseptica RB50]
gi|384205805|ref|YP_005591544.1| 50S ribosomal protein L17 [Bordetella pertussis CS]
gi|408416768|ref|YP_006627475.1| 50S ribosomal protein L17 [Bordetella pertussis 18323]
gi|410417872|ref|YP_006898321.1| 50S ribosomal protein L17 [Bordetella bronchiseptica MO149]
gi|410470872|ref|YP_006894153.1| 50S ribosomal protein L17 [Bordetella parapertussis Bpp5]
gi|427812311|ref|ZP_18979375.1| 50S ribosomal protein L17 [Bordetella bronchiseptica 1289]
gi|427817361|ref|ZP_18984424.1| 50S ribosomal protein L17 [Bordetella bronchiseptica D445]
gi|427823098|ref|ZP_18990160.1| 50S ribosomal protein L17 [Bordetella bronchiseptica Bbr77]
gi|81713200|sp|Q7VTA6.1|RL17_BORPE RecName: Full=50S ribosomal protein L17
gi|81713551|sp|Q7W2D0.1|RL17_BORPA RecName: Full=50S ribosomal protein L17
gi|81714456|sp|Q7WR98.1|RL17_BORBR RecName: Full=50S ribosomal protein L17
gi|33564584|emb|CAE43900.1| 50S ribosomal protein L17 [Bordetella pertussis Tohama I]
gi|33564855|emb|CAE39799.1| 50S ribosomal protein L17 [Bordetella parapertussis]
gi|33575097|emb|CAE30560.1| 50S ribosomal protein L17 [Bordetella bronchiseptica RB50]
gi|332383919|gb|AEE68766.1| 50S ribosomal protein L17 [Bordetella pertussis CS]
gi|401778938|emb|CCJ64407.1| 50S ribosomal protein L17 [Bordetella pertussis 18323]
gi|408440982|emb|CCJ47391.1| 50S ribosomal protein L17 [Bordetella parapertussis Bpp5]
gi|408445167|emb|CCJ56815.1| 50S ribosomal protein L17 [Bordetella bronchiseptica MO149]
gi|410563311|emb|CCN20845.1| 50S ribosomal protein L17 [Bordetella bronchiseptica 1289]
gi|410568361|emb|CCN16395.1| 50S ribosomal protein L17 [Bordetella bronchiseptica D445]
gi|410588363|emb|CCN03420.1| 50S ribosomal protein L17 [Bordetella bronchiseptica Bbr77]
Length = 131
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHRL M RNM +SL+ +E IKTTLPKAKELRRV+EP++TL K+ TL
Sbjct: 1 MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVIEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPRY NGGY R+LKMGFR GDNAPMAF+EL+++
Sbjct: 61 ANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQGDNAPMAFMELVDR 118
>gi|154148523|ref|YP_001405813.1| 30S ribosomal protein S4 [Campylobacter hominis ATCC BAA-381]
gi|171769700|sp|A7HZX2.1|RS4_CAMHC RecName: Full=30S ribosomal protein S4
gi|153804532|gb|ABS51539.1| ribosomal protein S4 [Campylobacter hominis ATCC BAA-381]
Length = 208
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 130/201 (64%), Gaps = 5/201 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M+RY GP KL RR G+DLF+K RR L K L RP GQHG+ ++ S+YG Q R
Sbjct: 1 MSRYTGPVEKLERRLGVDLFMKGERR-LAGKSALLKRPYAPGQHGQ-RRAKVSEYGSQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TGEI+++LLE R DN+VYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGLSEKQFRRLFKEAARREGNTGEILVQLLEQRLDNLVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K V+I SY +K G I + EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVDGKRVDIPSYSVKVGQKIEIAEKSKNNPQILRAVELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDIND 198
K G+F +P R E I +
Sbjct: 179 KKFGIFTRKPERDEIVIPIEE 199
>gi|386332174|ref|YP_006028343.1| 50S ribosomal protein L17 [Ralstonia solanacearum Po82]
gi|334194622|gb|AEG67807.1| 50S ribosomal protein L17 [Ralstonia solanacearum Po82]
Length = 132
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/118 (71%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +ELL++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFTELGPRYATRPGGYTRILKFGFRQGDNAPMALVELLDR 118
>gi|300702807|ref|YP_003744408.1| 50S ribosomal protein L17 [Ralstonia solanacearum CFBP2957]
gi|299070469|emb|CBJ41764.1| 50S ribosomal subunit protein L17 [Ralstonia solanacearum CFBP2957]
Length = 132
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/118 (71%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +ELL++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFTELGPRYATRPGGYTRILKFGFRQGDNAPMALVELLDR 118
>gi|217077309|ref|YP_002335027.1| 30S ribosomal protein S4 [Thermosipho africanus TCF52B]
gi|419759885|ref|ZP_14286170.1| 30S ribosomal protein S4 [Thermosipho africanus H17ap60334]
gi|226695088|sp|B7IHX2.1|RS4_THEAB RecName: Full=30S ribosomal protein S4
gi|217037164|gb|ACJ75686.1| ribosomal protein S4 [Thermosipho africanus TCF52B]
gi|407514924|gb|EKF49710.1| 30S ribosomal protein S4 [Thermosipho africanus H17ap60334]
Length = 209
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 123/194 (63%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP+ KLCRREG+ L+LK R KC D RP G HGR + + YG Q R
Sbjct: 1 MARYTGPQCKLCRREGMKLYLK-GERCFTDKCAFDRRPFAPGDHGR-DKKKLTQYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ +KR+YG+LE QFRRY+ +R G T E ++ +E R DNVVYR+GF+ R+ ARQ
Sbjct: 59 AKQTMKRIYGVLETQFRRYYETASRKSGDTRENLVVQVERRLDNVVYRLGFAVNRTTARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN + V I SY+++PGD+I +REK++ + N++EL++ W+TVD +
Sbjct: 119 LVNHGHVLVNGRKVTIPSYQVRPGDVIEIREKSRDILPVKNAIELNKDKNTMPWLTVDYE 178
Query: 178 KMEGVFKSEPNRSE 191
+G ++ P E
Sbjct: 179 NYKGTYERNPKLEE 192
>gi|159901450|ref|YP_001547697.1| 30S ribosomal protein S4 [Herpetosiphon aurantiacus DSM 785]
gi|226699075|sp|A9B436.1|RS4_HERA2 RecName: Full=30S ribosomal protein S4
gi|159894489|gb|ABX07569.1| ribosomal protein S4 [Herpetosiphon aurantiacus DSM 785]
Length = 211
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 136/206 (66%), Gaps = 8/206 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSA---RRSLDSKCKLDLRPGQHG-RISGSRTSDYGYQF 56
MARY GP KL RREG+DL LKS R+ L+ + PGQHG + + SDYG Q
Sbjct: 1 MARYTGPVCKLSRREGVDLMLKSGNSGRKVLERRGSQP--PGQHGASVRRRQLSDYGVQL 58
Query: 57 REKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEAR 116
REKQKV+R+YG+LE+QFRRY+ R G+TG ++L++LE R DNVV+R+G++ TR++AR
Sbjct: 59 REKQKVRRIYGVLERQFRRYYGIATRTTGQTGAVLLQILERRLDNVVFRLGYAVTRAQAR 118
Query: 117 QLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSE--HSTPFSWITV 174
QL++H VN + +I S ++ GD+I VR +++K+ + E + +P SW+++
Sbjct: 119 QLVNHGHITVNGRKTDIPSALVEVGDVIGVRAESRKRDYFKDLEETKQLNRVSPPSWLSL 178
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
DA KMEGV ++ P+R E IN+ L
Sbjct: 179 DAGKMEGVVQTFPSREELDMSINEQL 204
>gi|302871525|ref|YP_003840161.1| 30S ribosomal protein S4 [Caldicellulosiruptor obsidiansis OB47]
gi|312127253|ref|YP_003992127.1| 30S ribosomal protein S4 [Caldicellulosiruptor hydrothermalis 108]
gi|302574384|gb|ADL42175.1| ribosomal protein S4 [Caldicellulosiruptor obsidiansis OB47]
gi|311777272|gb|ADQ06758.1| ribosomal protein S4 [Caldicellulosiruptor hydrothermalis 108]
Length = 208
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M++YIGP +LCRREG+ LFLK R KC RP GQHG+ + S+YG Q R
Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDR-CYTEKCAFARRPYPPGQHGQ-ERKKLSEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF ++KG GE +L LLE R DNVVYR+GF+S+R EAR
Sbjct: 59 EKQKVKRIYGVLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH F VN + VNI SY +K GD+I V E++K +TR E W+ DA+
Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I + L
Sbjct: 179 NLVGKVIALPTREDIDMPIREHL 201
>gi|222823138|ref|YP_002574711.1| 30S ribosomal protein S4 [Campylobacter lari RM2100]
gi|254764576|sp|B9KEH5.1|RS4_CAMLR RecName: Full=30S ribosomal protein S4
gi|222538359|gb|ACM63460.1| 30S ribosomal protein S4 [Campylobacter lari RM2100]
Length = 208
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 127/194 (65%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L +K RR L K LD RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYRGPVEKLERRLGVSLAMKGERR-LAGKSALDKRPYAPGQHGQ-RKAKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARKDGNTGALLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY+++ G I V EK+K +I+ ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEAGQKIEVIEKSKNNPQISRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|389873956|ref|YP_006381375.1| DNA-directed RNA polymerase subunit alpha [Advenella kashmirensis
WT001]
gi|388539205|gb|AFK64393.1| DNA-directed RNA polymerase subunit alpha [Advenella kashmirensis
WT001]
Length = 327
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 105/129 (81%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V + NHAKV+MEPFERGYG+TLGNALRR+LLSSM G APTEV I+G +HE
Sbjct: 5 FLKPRSIEVTPVTENHAKVVMEPFERGYGHTLGNALRRILLSSMTGFAPTEVQITGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L GV+ED++DI+LNLKG++ KL NR+ + L+K G VLASDI+L D+E++NPN
Sbjct: 65 YSTLTGVREDVVDIVLNLKGIVFKLNNREEVTVTLRKSGSGPVLASDIDLPHDVEIINPN 124
Query: 319 HIIAHLSDN 327
H+IA L++N
Sbjct: 125 HVIATLTEN 133
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 90/105 (85%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALEN------TPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQSAR+L+DQ++VFAALE TPV+ + ++DP+LLRPVDDLELTVRS
Sbjct: 210 EEAVRQSARILMDQISVFAALEGASDTFETPVR-----GVPQIDPVLLRPVDDLELTVRS 264
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 265 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 309
>gi|332286119|ref|YP_004418030.1| 30S ribosomal protein S4 [Pusillimonas sp. T7-7]
gi|330430072|gb|AEC21406.1| 30S ribosomal protein S4 [Pusillimonas sp. T7-7]
Length = 154
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 106/144 (73%)
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q REKQK+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+E
Sbjct: 2 QLREKQKLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAE 61
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
ARQL++HRA +N +IAS +K GD+IS+REKAK Q RI SL+L+ W+ V
Sbjct: 62 ARQLVNHRAIELNGHTADIASMLVKAGDVISIREKAKAQLRIRESLDLATGQGLPQWVEV 121
Query: 175 DAKKMEGVFKSEPNRSEFANDIND 198
D K+ G FK P+R++ A D+N+
Sbjct: 122 DTNKLAGTFKQAPDRADVARDVNE 145
>gi|116749016|ref|YP_845703.1| 30S ribosomal protein S4 [Syntrophobacter fumaroxidans MPOB]
gi|152112270|sp|A0LIL6.1|RS4_SYNFM RecName: Full=30S ribosomal protein S4
gi|116698080|gb|ABK17268.1| SSU ribosomal protein S4P [Syntrophobacter fumaroxidans MPOB]
Length = 208
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY ++CRRE + L+LK R KC ++ R PGQHG+ G + SDYG Q R
Sbjct: 1 MARYTDSSCRICRRETMKLYLKGDR-CYSDKCAVERRNYPPGQHGQGRG-KFSDYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++RMYG++EKQF+ YF R KG TG L LLE R DN VYR+GF+S+R++ARQ
Sbjct: 59 EKQKIRRMYGLVEKQFKTYFKHADRQKGVTGTNFLTLLERRIDNTVYRLGFASSRAQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H FLVN K VNI S+ ++PGD +SV E +++ I ++E W+ +D
Sbjct: 119 LVRHSHFLVNGKKVNIPSFLLRPGDSVSVVEGSRQLQMINEAMEAMPRRGLPPWLELDKA 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K EGVFK+ P R E + + L
Sbjct: 179 KYEGVFKTLPTREEMNLPVQEQL 201
>gi|392413534|ref|YP_006450141.1| SSU ribosomal protein S4P [Desulfomonile tiedjei DSM 6799]
gi|390626670|gb|AFM27877.1| SSU ribosomal protein S4P [Desulfomonile tiedjei DSM 6799]
Length = 208
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY + CRRE LFLK R KC ++ R PGQHG+ + +DYG Q R
Sbjct: 1 MARYRESVCRFCRREMTKLFLKGDR-CYSDKCSVERRNYPPGQHGQ-GRPKHTDYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LEKQFR Y R KG TGE +L LLESR DN+VYRMGF+S+R+EARQ
Sbjct: 59 EKQKVKRIYGVLEKQFRNYVGLAERQKGVTGENLLVLLESRLDNMVYRMGFASSRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN + V+I S++IKPG++I +REK++ + SL+ W+ VD
Sbjct: 119 LVTHGHILVNGRKVDIVSFRIKPGNVIELREKSRTIPSVEESLKTVTRRGVPEWLDVDVA 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+GV K+ P R E I + L
Sbjct: 179 NFKGVVKALPTREELPPTIREQL 201
>gi|187476574|ref|YP_784598.1| DNA-directed RNA polymerase subunit alpha [Bordetella avium 197N]
gi|119366666|sp|Q2L238.1|RPOA_BORA1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|115421160|emb|CAJ47644.1| DNA-directed RNA polymerase alpha chain [Bordetella avium 197N]
Length = 328
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 106/128 (82%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G NHAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGPNHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS++ GV+ED++DI+LNLKGV+ KL+NRD L L+K G +VLASDIEL D+E+VNP
Sbjct: 66 YSTIPGVREDVVDILLNLKGVVFKLHNRDEVTLILRKNGSGLVLASDIELPHDVEIVNPE 125
Query: 319 HIIAHLSD 326
H I +L+D
Sbjct: 126 HPICNLTD 133
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 88/105 (83%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT------PVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQSAR+L+DQ++VFAALE PV+ ++DP+LLRPVDDLELTVRS
Sbjct: 211 EEAVRQSARILMDQISVFAALEGAGDSYEAPVR-----GTPQIDPVLLRPVDDLELTVRS 265
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 266 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 310
>gi|222529703|ref|YP_002573585.1| 30S ribosomal protein S4 [Caldicellulosiruptor bescii DSM 6725]
gi|254764564|sp|B9MKF4.1|RS4_ANATD RecName: Full=30S ribosomal protein S4
gi|222456550|gb|ACM60812.1| ribosomal protein S4 [Caldicellulosiruptor bescii DSM 6725]
Length = 208
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M++YIGP +LCRREG+ LFLK R KC RP GQHG+ + S+YG Q R
Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDR-CYTEKCAFARRPYPPGQHGQ-ERKKLSEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF ++KG GE +L LLE R DNVVYR+GF+S+R EAR
Sbjct: 59 EKQKVKRIYGVLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARL 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH F VN + VNI SY +K GD+I V E++K +TR E W+ DA+
Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I + L
Sbjct: 179 NLVGKVIALPTREDIDMPIREHL 201
>gi|312622072|ref|YP_004023685.1| 30S ribosomal protein S4 [Caldicellulosiruptor kronotskyensis 2002]
gi|312202539|gb|ADQ45866.1| ribosomal protein S4 [Caldicellulosiruptor kronotskyensis 2002]
Length = 208
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M++YIGP +LCRREG+ LFLK R KC RP GQHG+ + S+YG Q R
Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDR-CYTEKCAFARRPYPPGQHGQ-ERKKLSEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF ++KG GE +L LLE R DNVVYR+GF+S+R EAR
Sbjct: 59 EKQKVKRIYGVLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARL 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH F VN + VNI SY +K GD+I V E++K +TR E W+ DA+
Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I + L
Sbjct: 179 NLVGKVIALPTREDIDMPIREHL 201
>gi|312793912|ref|YP_004026835.1| 30S ribosomal protein S4 [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181052|gb|ADQ41222.1| ribosomal protein S4 [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 208
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M++YIGP +LCRREG+ LFLK R KC RP GQHG+ + S+YG Q R
Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDR-CYTEKCAFARRPYPPGQHGQ-ERKKLSEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF ++KG GE +L LLE R DNVVYR+GF+S+R EAR
Sbjct: 59 EKQKVKRIYGVLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH F VN + VNI SY +K GD+I V E++K +TR E W+ DA+
Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I + L
Sbjct: 179 NLVGKVIALPTREDIDMPIREHL 201
>gi|118474712|ref|YP_891268.1| 30S ribosomal protein S4 [Campylobacter fetus subsp. fetus 82-40]
gi|424819986|ref|ZP_18245024.1| 30S ribosomal protein S4 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|152060940|sp|A0RM35.1|RS4_CAMFF RecName: Full=30S ribosomal protein S4
gi|118413938|gb|ABK82358.1| ribosomal protein S4 [Campylobacter fetus subsp. fetus 82-40]
gi|342326765|gb|EGU23249.1| 30S ribosomal protein S4 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 208
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 127/201 (63%), Gaps = 5/201 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERR-LAGKSALDKRPYAPGQHGQ-RKTKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG +++ LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFSEAARREGNTGALLIGLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY++ G+ I V EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKKVDIPSYRVTAGEKIEVAEKSKTNPQIVRAIELTNQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDIND 198
K G+F P R E + +
Sbjct: 179 KKYGIFTRIPEREEVVIPVEE 199
>gi|163859244|ref|YP_001633542.1| 50S ribosomal protein L17 [Bordetella petrii DSM 12804]
gi|226712113|sp|A9IHR4.1|RL17_BORPD RecName: Full=50S ribosomal protein L17
gi|163262972|emb|CAP45275.1| 50S ribosomal protein L17 [Bordetella petrii]
Length = 131
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHRL M RNM +SL+ +E IKTTLPKAKELRRVVEP++TL K+ TL
Sbjct: 1 MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVVEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPRY NGGY R+LKMGFR GDNAPMA++EL+++
Sbjct: 61 ANKRLAFARLRDRAAVVKLFAEIGPRYAARNGGYTRVLKMGFRQGDNAPMAYMELVDR 118
>gi|296131863|ref|YP_003639110.1| 30S ribosomal protein S4 [Thermincola potens JR]
gi|296030441|gb|ADG81209.1| ribosomal protein S4 [Thermincola potens JR]
Length = 208
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG L+LK R KC +D R PG HG+ + S+YG Q R
Sbjct: 1 MARYTGPVCRLCRREGAKLYLKGDR-CYSDKCAIDRRGYAPGMHGQ-GRKKISEYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YG+LEKQFR YF + R G TGE +L+LLE R DNVVYR+GF+S+R+EARQ
Sbjct: 59 EKQKARRIYGVLEKQFRNYFAKADRQPGVTGENLLRLLERRLDNVVYRLGFASSRTEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN K VNI SY +K GD+I ++EK+ + RI LE + H TP +W+ +D
Sbjct: 119 LVRHGHFTVNDKKVNIPSYSLKVGDVIKIKEKSLELPRIKELLEQAAHKTPPAWLELDVD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P+R E I + L
Sbjct: 179 QHLGKVVAIPSREEIDVPIEEHL 201
>gi|237653969|ref|YP_002890283.1| 50S ribosomal protein L17 [Thauera sp. MZ1T]
gi|237625216|gb|ACR01906.1| ribosomal protein L17 [Thauera sp. MZ1T]
Length = 132
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 101/118 (85%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR+G RKLNRTSSHR M RNM SLLR+E+IKTTLPKAKELRRVVEP++TL KK +L
Sbjct: 1 MRHRNGLRKLNRTSSHRQAMFRNMANSLLRHELIKTTLPKAKELRRVVEPMITLGKKPSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
SN+RLAF+ LRDR + +KLF ELGPRY NGGY+RILK GFR GDNAPMA++ELL++
Sbjct: 61 SNRRLAFNRLRDRDMVVKLFDELGPRYATRNGGYLRILKCGFRDGDNAPMAYVELLDR 118
>gi|312135469|ref|YP_004002807.1| 30S ribosomal protein S4 [Caldicellulosiruptor owensensis OL]
gi|311775520|gb|ADQ05007.1| ribosomal protein S4 [Caldicellulosiruptor owensensis OL]
Length = 208
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M++YIGP +LCRREG+ LFLK R KC RP GQHG+ + S+YG Q R
Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDR-CYTEKCAFARRPYPPGQHGQ-ERKKLSEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF ++KG GE +L LLE R DNVVYR+GF+S+R EAR
Sbjct: 59 EKQKVKRIYGVLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH F VN + VNI SY +K GD+I V E++K +TR E W+ DA+
Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I + L
Sbjct: 179 NLIGKVIALPTREDIDMPIREHL 201
>gi|152993918|ref|YP_001359639.1| 30S ribosomal protein S4 [Sulfurovum sp. NBC37-1]
gi|172048747|sp|A6QCS3.1|RS4_SULNB RecName: Full=30S ribosomal protein S4
gi|151425779|dbj|BAF73282.1| 30S ribosomal protein S4 [Sulfurovum sp. NBC37-1]
Length = 208
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP +L RR G+DL LK RR L K L+ RP GQHG+ ++ S+YG Q +
Sbjct: 1 MARYRGPVERLERRLGVDLGLKGERR-LAGKSALEKRPYAPGQHGQRR-TKISEYGLQLQ 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG EKQFR + E R +G TG I+++LLE R DNVVYRMGF++TR+ ARQ
Sbjct: 59 EKQKAKFMYGTSEKQFRALYKEANRKEGNTGSILIQLLEQRLDNVVYRMGFATTRASARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++H LV+ K V+I SY++K G I +REK+K ++I ++EL+ + W+ VD +
Sbjct: 119 FVNHGHVLVDGKRVDIPSYRVKAGQKIEIREKSKTNSQILRAIELTNQTGMVEWVDVDKE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G+F P R E A + + L
Sbjct: 179 KLFGIFSRVPEREEIAIPVEERL 201
>gi|422348987|ref|ZP_16429879.1| 50S ribosomal protein L17 [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658747|gb|EKB31611.1| 50S ribosomal protein L17 [Sutterella wadsworthensis 2_1_59BFAA]
Length = 129
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 101/115 (87%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR G RKLNRTS+HRL MLRNM SL+++E IKTTLPKAKELRRVVEP++TL+K+ T+
Sbjct: 1 MRHRLGLRKLNRTSAHRLAMLRNMMCSLIKHEAIKTTLPKAKELRRVVEPMITLAKEPTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIEL 544
+NKRLAF+ LRDR++ KLF+E+GPR+ NGGY RILKMGFRVGDNAPMA++EL
Sbjct: 61 ANKRLAFNRLRDREVVCKLFNEIGPRFANRNGGYTRILKMGFRVGDNAPMAYMEL 115
>gi|20808633|ref|NP_623804.1| 30S ribosomal protein S4 [Thermoanaerobacter tengcongensis MB4]
gi|26399396|sp|Q8R7Y1.1|RS4_THETN RecName: Full=30S ribosomal protein S4
gi|20517267|gb|AAM25408.1| Ribosomal protein S4 and related proteins [Thermoanaerobacter
tengcongensis MB4]
Length = 206
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
M RY+GP +LCRREGI L+LK + D KC L R PGQHG+ + + YG Q R
Sbjct: 1 MGRYLGPSCRLCRREGIKLYLKGEKCYTD-KCPLAKRGYAPGQHGQ-EKKKLTQYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+KR YGILE+QF RY+ R++G TGE +L+LLE R DNVVYR+GF+ +R++ARQ
Sbjct: 59 EKQKLKRYYGILERQFVRYYERAERMRGITGENLLQLLERRLDNVVYRLGFAVSRAQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH VN K V+I SY +KPGD+ISV+E ++ I N+LE+ + P W+ ++
Sbjct: 119 LVSHGHIEVNGKKVDIPSYLVKPGDVISVKESSRSMELIKNNLEMG-RNVP-DWLELNKD 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG S P R + + L
Sbjct: 177 AFEGRVVSLPRREHIDLPVQEHL 199
>gi|374316516|ref|YP_005062944.1| 30S ribosomal protein S4 [Sphaerochaeta pleomorpha str. Grapes]
gi|359352160|gb|AEV29934.1| ribosomal protein S4, bacterial/organelle type [Sphaerochaeta
pleomorpha str. Grapes]
Length = 213
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 128/207 (61%), Gaps = 8/207 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKL-DLR----PGQHGRISGSRTSDYGYQ 55
MARY GPK + CR E LFLK R KC + DL+ PG+ R + +DYG Q
Sbjct: 1 MARYTGPKCRYCRAERTKLFLK-GERCHSGKCPMNDLKSAGLPGKDPRARSKKPTDYGLQ 59
Query: 56 FREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEA 115
REKQK+KR Y +LEKQF+ F E AR+ GKTGE ++ LLE R DNVVYR+ F+S+RSE+
Sbjct: 60 LREKQKLKRTYCMLEKQFKLTFDEAARVPGKTGENLIMLLECRLDNVVYRLHFASSRSES 119
Query: 116 RQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVD 175
QLI+H VN K V I SY++KPGD++SV + +K I +L+ S W+T+D
Sbjct: 120 AQLINHGHIQVNGKRVTIPSYRLKPGDVVSVGPRGQKMISIKENLKEYSKSGVCQWLTLD 179
Query: 176 AKKMEGVFKSEPNRSEFA--NDINDLL 200
A M+G F + P RSE IN+ L
Sbjct: 180 ADAMKGTFVAVPRRSEVTELEKINEQL 206
>gi|158319571|ref|YP_001512078.1| 30S ribosomal protein S4 [Alkaliphilus oremlandii OhILAs]
gi|172048249|sp|A8MLG8.1|RS4A_ALKOO RecName: Full=30S ribosomal protein S4 A
gi|158139770|gb|ABW18082.1| ribosomal protein S4 [Alkaliphilus oremlandii OhILAs]
Length = 207
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 131/203 (64%), Gaps = 6/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY +LCRREG+ L+LK R D KC + R PGQHG+ S + S+YG Q R
Sbjct: 1 MARYTEAVCRLCRREGMKLYLKGDRCYTD-KCAISKRTYAPGQHGQ-SRKKLSNYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK KR YG+LE QFR+YF + G TGE +L+LLE+R DNV YR+GF S+R+EARQ
Sbjct: 59 EKQKAKRFYGVLESQFRKYFEIADKQAGITGENLLRLLETRLDNVAYRLGFGSSRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F VN K V+I SY + GD I+V EK+K + E ++ +TP +W+TVD +
Sbjct: 119 LVVHGHFTVNGKKVDIPSYLVSAGDTIAVAEKSKSSAKFKALAENAKGNTP-NWLTVDVE 177
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+EG + P+R + +I + L
Sbjct: 178 KLEGKVVALPSREDIDLEIAENL 200
>gi|94312221|ref|YP_585431.1| 50S ribosomal protein L17 [Cupriavidus metallidurans CH34]
gi|430805775|ref|ZP_19432890.1| 50S ribosomal protein L17 [Cupriavidus sp. HMR-1]
gi|119365894|sp|Q1LI64.1|RL17_RALME RecName: Full=50S ribosomal protein L17
gi|93356073|gb|ABF10162.1| 50S ribosomal subunit protein L17 [Cupriavidus metallidurans CH34]
gi|429501934|gb|ELA00258.1| 50S ribosomal protein L17 [Cupriavidus sp. HMR-1]
Length = 131
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFTELGPRYATRPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|452126808|ref|ZP_21939391.1| DNA-directed RNA polymerase subunit alpha [Bordetella holmesii
F627]
gi|452130181|ref|ZP_21942754.1| DNA-directed RNA polymerase subunit alpha [Bordetella holmesii
H558]
gi|451921903|gb|EMD72048.1| DNA-directed RNA polymerase subunit alpha [Bordetella holmesii
F627]
gi|451923041|gb|EMD73185.1| DNA-directed RNA polymerase subunit alpha [Bordetella holmesii
H558]
Length = 328
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 106/128 (82%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G NHAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGPNHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS++ GV+ED++DI+LNLKGV+ KL+NRD L L+K G VLASDIEL D+E+VNP+
Sbjct: 66 YSTIPGVREDVVDILLNLKGVVFKLHNRDEVTLILRKNGAGQVLASDIELPHDVEIVNPD 125
Query: 319 HIIAHLSD 326
H I +L+D
Sbjct: 126 HPICNLTD 133
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 87/100 (87%), Gaps = 1/100 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELD-SSLEKVDPILLRPVDDLELTVRSANCLK 386
EEA+RQSAR+L+DQ++VFAALE E+ ++DP+LLRPVDDLELTVRSANCLK
Sbjct: 211 EEAVRQSARILMDQISVFAALEGAGDSYEVPVRGTPQIDPVLLRPVDDLELTVRSANCLK 270
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
AENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 271 AENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 310
>gi|114778798|ref|ZP_01453605.1| 30S ribosomal protein S4 [Mariprofundus ferrooxydans PV-1]
gi|114550929|gb|EAU53493.1| 30S ribosomal protein S4 [Mariprofundus ferrooxydans PV-1]
Length = 209
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY+ K +LCRREG LFLK + KC ++ RP G HG+ ++ SDYG Q R
Sbjct: 1 MARYLEAKCRLCRREGEKLFLKGGK-CYSDKCPIERRPYAPGMHGQNRRTKVSDYGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+ EKQFR YF + R+ G TG +L++LESR DNVVYRMG +S+R+EARQ
Sbjct: 60 EKQKVKRIYGLQEKQFRGYFDDADRMPGITGLNLLQILESRLDNVVYRMGLASSRTEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H+ VN IVNI SY++ G + + + AK+Q R+ + E + W+ VD
Sbjct: 120 IVRHKLLKVNGGIVNIPSYRVAVGSRLELVDGAKEQLRVNAATEAAGSRGAAEWLDVDLP 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+GV++ P R + ++I + L
Sbjct: 180 SRQGVYREMPVRDQLDSNIREQL 202
>gi|393760691|ref|ZP_10349498.1| DNA-directed RNA polymerase subunit alpha [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
gi|424778051|ref|ZP_18205005.1| DNA-directed RNA polymerase subunit alpha [Alcaligenes sp. HPC1271]
gi|393161189|gb|EJC61256.1| DNA-directed RNA polymerase subunit alpha [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
gi|422887111|gb|EKU29520.1| DNA-directed RNA polymerase subunit alpha [Alcaligenes sp. HPC1271]
Length = 327
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 106/129 (82%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ + NHAKVIMEPFERGYG+TLGNALRR+LLSSM G APTEV I+G +HE
Sbjct: 5 FLKPRSIEVEPISKNHAKVIMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQITGVVHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+L GV ED++DI++NLKGV+ KL++R+ L L+K G VLASDIEL D+E++NPN
Sbjct: 65 YSTLPGVGEDVVDILMNLKGVVFKLHSREEVTLILRKEGAGQVLASDIELPHDVEIINPN 124
Query: 319 HIIAHLSDN 327
H+IA L+D+
Sbjct: 125 HVIATLTDD 133
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 88/105 (83%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALEN------TPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQSAR+L+DQ++VFAALE PV+ ++DP+LLRPVDDLELTVRS
Sbjct: 210 EEAVRQSARILMDQISVFAALEGVGDAYEAPVR-----GAPQIDPVLLRPVDDLELTVRS 264
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 265 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 309
>gi|256820007|ref|YP_003141286.1| 30S ribosomal protein S4 [Capnocytophaga ochracea DSM 7271]
gi|256581590|gb|ACU92725.1| ribosomal protein S4 [Capnocytophaga ochracea DSM 7271]
Length = 201
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 127/201 (63%), Gaps = 8/201 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISG-SRTSDYGYQFREK 59
MARY GPK K+ R+ G +F +S + K + PGQHG ++ S+Y Q +EK
Sbjct: 1 MARYTGPKTKIARKFGEAIF--GDDKSFERK---NYPPGQHGLARRRAKRSEYAIQLQEK 55
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK K YGILEKQF + + R K TGE++L+L ESR DNVVYRMG + TRS ARQL+
Sbjct: 56 QKAKYTYGILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLV 115
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR VN IVNI SY +KPGD++ VREK+K + I NS L+ HS + WIT + +K+
Sbjct: 116 SHRHITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVIENS--LAAHSAVYEWITWNPEKL 173
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG F + P R + +I + L
Sbjct: 174 EGTFVAVPQRIQIPENIKEQL 194
>gi|354558467|ref|ZP_08977722.1| ribosomal protein S4 [Desulfitobacterium metallireducens DSM 15288]
gi|353546945|gb|EHC16392.1| ribosomal protein S4 [Desulfitobacterium metallireducens DSM 15288]
Length = 208
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 133/203 (65%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ LFLK R KC +D R PGQHG+ G + ++YG Q R
Sbjct: 1 MARYTGPVCRLCRREGMKLFLKGDR-CYTGKCAIDRRAYAPGQHGQSRGKKPTEYGIQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YG+ EKQFR YF+E +R KG TGE +L+LLE R DNVV+++GF+++R EARQ
Sbjct: 60 EKQKVRRIYGVAEKQFRTYFVEASRQKGMTGENLLRLLERRLDNVVFQLGFATSRPEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F+VN + V+I S+ ++ GD+++ +E +K RI L + TP W+++DA
Sbjct: 120 LVRHGHFIVNGRRVDIPSFLVRQGDVVAYKEASKTSPRIKEIL-TNLDRTPPQWLSLDAN 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
G + P R + I + L
Sbjct: 179 AASGTVVALPTREDIQMPIQEHL 201
>gi|383756216|ref|YP_005435201.1| 50S ribosomal protein L17 [Rubrivivax gelatinosus IL144]
gi|381376885|dbj|BAL93702.1| 50S ribosomal protein L17 RplQ [Rubrivivax gelatinosus IL144]
Length = 131
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 99/118 (83%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM SL+R+E IKTT+PKAKELR VVEP++TL K TL
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMANSLIRHEAIKTTVPKAKELRAVVEPLITLGKTPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF RDR++ KLF+ELGPRY GGY RILKMGFRVGDNAPMAF+EL+++
Sbjct: 61 ANRRLAFDRTRDREVVSKLFNELGPRYATRPGGYTRILKMGFRVGDNAPMAFVELVDR 118
>gi|340360981|ref|ZP_08683431.1| DNA-directed RNA polymerase subunit alpha [Neisseria macacae ATCC
33926]
gi|339889212|gb|EGQ78597.1| DNA-directed RNA polymerase subunit alpha [Neisseria macacae ATCC
33926]
Length = 328
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 105/134 (78%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV IS
Sbjct: 3 NSTTEFLKPRQIDVDTLSTTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIS 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++DI+LN+KG++ KL+ R L L+K G VV+A DIEL D+E
Sbjct: 63 GVLHEYSTVDGVQEDVVDILLNVKGIVFKLHGRGQVQLTLRKSGAGVVVAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP HII HL++N
Sbjct: 123 ILNPEHIICHLAEN 136
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|340353276|ref|ZP_08676098.1| 30S ribosomal protein S4 [Prevotella pallens ATCC 700821]
gi|339610643|gb|EGQ15491.1| 30S ribosomal protein S4 [Prevotella pallens ATCC 700821]
Length = 202
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 125/200 (62%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK+++ RR G +F A + L K + PGQHG + S+YG Q EKQ
Sbjct: 1 MARYIGPKSRIARRFGEPIF--GADKVL---AKRNFPPGQHGNNRRRKVSEYGAQLAEKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LE+QFR F A+ G TGE++L+ LESR DNVVYR+G + TR+ ARQL+S
Sbjct: 56 KAKYTYGVLERQFRNLFDRAAKASGITGEVLLQSLESRLDNVVYRLGLAPTRAAARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ +VN +VNIASY +KPGDI+ VRE+AK I +L HS + WI D
Sbjct: 116 HKHIVVNGSVVNIASYAVKPGDIVGVRERAKSLEVIEAALAGFNHSK-YPWIEWDENSKS 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F +P+R++ +I + L
Sbjct: 175 GKFLHQPDRADIPENIKEQL 194
>gi|83748176|ref|ZP_00945203.1| LSU ribosomal protein L17P [Ralstonia solanacearum UW551]
gi|207744549|ref|YP_002260941.1| 50s ribosomal subunit protein l17 [Ralstonia solanacearum IPO1609]
gi|421890475|ref|ZP_16321334.1| 50S ribosomal subunit protein L17 [Ralstonia solanacearum K60-1]
gi|421895873|ref|ZP_16326272.1| 50s ribosomal subunit protein l17 [Ralstonia solanacearum MolK2]
gi|83725144|gb|EAP72295.1| LSU ribosomal protein L17P [Ralstonia solanacearum UW551]
gi|206587038|emb|CAQ17622.1| 50s ribosomal subunit protein l17 [Ralstonia solanacearum MolK2]
gi|206595955|emb|CAQ62882.1| 50s ribosomal subunit protein l17 [Ralstonia solanacearum IPO1609]
gi|378964186|emb|CCF98082.1| 50S ribosomal subunit protein L17 [Ralstonia solanacearum K60-1]
Length = 132
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFTELGPRYATRPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|258406160|ref|YP_003198902.1| 30S ribosomal protein S4 [Desulfohalobium retbaense DSM 5692]
gi|257798387|gb|ACV69324.1| ribosomal protein S4 [Desulfohalobium retbaense DSM 5692]
Length = 208
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY K +LCRREG LFLK R D KC + R PGQHGR+ + SDY Q R
Sbjct: 1 MARYTESKCRLCRREGEKLFLKGDRCYTD-KCAFERRAYPPGQHGRMR-KKPSDYAIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILE QFR YF + KG TG +L+LLE+R DNVVYR+GF+++R +ARQ
Sbjct: 59 EKQKVRRLYGILENQFRNYFKKAEAQKGVTGTNLLRLLETRLDNVVYRLGFANSREQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H F +N + VNI S +++ GD I VRE+++K + E+ W+ VD+
Sbjct: 119 LVRHGHFELNGRRVNIPSLQVREGDAIEVRERSRKVPAFQEAQEVIARRGCPEWLEVDSA 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+G K++P R + IN+ L
Sbjct: 179 AFKGAIKAQPQREDVTFPINEQL 201
>gi|293602598|ref|ZP_06685041.1| DNA-directed RNA polymerase subunit alpha [Achromobacter piechaudii
ATCC 43553]
gi|311109576|ref|YP_003982429.1| DNA-directed RNA polymerase subunit alpha [Achromobacter
xylosoxidans A8]
gi|421486512|ref|ZP_15934056.1| DNA-directed RNA polymerase subunit alpha [Achromobacter piechaudii
HLE]
gi|422323464|ref|ZP_16404503.1| DNA-directed RNA polymerase subunit alpha [Achromobacter
xylosoxidans C54]
gi|423014740|ref|ZP_17005461.1| DNA-directed RNA polymerase subunit alpha [Achromobacter
xylosoxidans AXX-A]
gi|292818970|gb|EFF78008.1| DNA-directed RNA polymerase subunit alpha [Achromobacter piechaudii
ATCC 43553]
gi|310764265|gb|ADP19714.1| DNA-directed RNA polymerase, alpha subunit [Achromobacter
xylosoxidans A8]
gi|317401574|gb|EFV82203.1| DNA-directed RNA polymerase subunit alpha [Achromobacter
xylosoxidans C54]
gi|338782356|gb|EGP46731.1| DNA-directed RNA polymerase subunit alpha [Achromobacter
xylosoxidans AXX-A]
gi|400195216|gb|EJO28208.1| DNA-directed RNA polymerase subunit alpha [Achromobacter piechaudii
HLE]
Length = 328
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 106/128 (82%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G++HAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGTHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS++ GV+ED++DI+LNLKGV+ KL+NRD L L+K G VLASDIEL D+E++NP
Sbjct: 66 YSTIPGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKTGAGTVLASDIELPHDVEIINPG 125
Query: 319 HIIAHLSD 326
H I +L+D
Sbjct: 126 HAICNLTD 133
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 88/105 (83%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT------PVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQSAR+L+DQ++VFAALE PV+ ++DP+LLRPVDDLELTVRS
Sbjct: 211 EEAVRQSARILMDQISVFAALEGAGDSYEAPVR-----GTPQIDPVLLRPVDDLELTVRS 265
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 266 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 310
>gi|253998042|ref|YP_003050105.1| 50S ribosomal protein L17 [Methylovorus glucosetrophus SIP3-4]
gi|253984721|gb|ACT49578.1| ribosomal protein L17 [Methylovorus glucosetrophus SIP3-4]
Length = 129
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR+ RKLNRTSSHR MLRNM SLLR+E+IKTTLPKAKELRRV EP++TL K TL
Sbjct: 1 MRHRNSNRKLNRTSSHRQAMLRNMATSLLRHEVIKTTLPKAKELRRVAEPLITLGKNATL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAFS LRDR I KLF+ELGPRY+ NGGY+RILK GFRVGDNAPMA +EL+++
Sbjct: 61 ANRRLAFSRLRDRDIVGKLFNELGPRYLTRNGGYLRILKCGFRVGDNAPMALVELVDR 118
>gi|167036828|ref|YP_001664406.1| 30S ribosomal protein S4 [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167039547|ref|YP_001662532.1| 30S ribosomal protein S4 [Thermoanaerobacter sp. X514]
gi|256752659|ref|ZP_05493511.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus CCSD1]
gi|300915202|ref|ZP_07132517.1| ribosomal protein S4 [Thermoanaerobacter sp. X561]
gi|307725126|ref|YP_003904877.1| 30S ribosomal protein S4 [Thermoanaerobacter sp. X513]
gi|320115250|ref|YP_004185409.1| 30S ribosomal protein S4 [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|226695091|sp|B0KCM7.1|RS4_THEP3 RecName: Full=30S ribosomal protein S4
gi|226695092|sp|B0K5S0.1|RS4_THEPX RecName: Full=30S ribosomal protein S4
gi|166853787|gb|ABY92196.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X514]
gi|166855662|gb|ABY94070.1| RNA-binding S4 domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748479|gb|EEU61531.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus CCSD1]
gi|300888926|gb|EFK84073.1| ribosomal protein S4 [Thermoanaerobacter sp. X561]
gi|307582187|gb|ADN55586.1| ribosomal protein S4 [Thermoanaerobacter sp. X513]
gi|319928341|gb|ADV79026.1| ribosomal protein S4 [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 206
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
M RY GP +LCRREG+ L+LK + D KC R PGQHG+ + ++YG Q R
Sbjct: 1 MGRYTGPTCRLCRREGMKLYLKGDKCYTD-KCPFARRGYAPGQHGQ-EKKKLTNYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+KR YG+LE+QF R + E R+KG TGE +L+LLE R DNVV+R+GF+++R +ARQ
Sbjct: 59 EKQKLKRYYGVLERQFERLYEEAERMKGITGENLLQLLERRLDNVVFRLGFAASRPQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH VN K V+I S+ +KPGD+ISVREK++ I N+LE+S + W+ ++
Sbjct: 119 LVSHGHIEVNGKKVDIPSFLVKPGDVISVREKSRSMELIKNNLEVSRNVP--DWLELNKD 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG S P R I + L
Sbjct: 177 AFEGRVVSLPRREHIDLPIQEHL 199
>gi|172049036|sp|A6LEG6.2|RS4_PARD8 RecName: Full=30S ribosomal protein S4
Length = 201
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 124/200 (62%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP+ ++ R+ G +F A + L K + PGQHG +TS+YG Q REKQ
Sbjct: 1 MARYTGPRTRIARKFGEAIF--GADKVLSKK---NYPPGQHGNSRKRKTSEYGIQLREKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LEKQFR F + +R KG TGE++L+LLE R DNVVYR+G + TR+ ARQL+S
Sbjct: 56 KAKYTYGVLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVYRLGIAPTRAAARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR V+ +VNI SY +KPG +I VREK+K IA++L HS + WI D M
Sbjct: 116 HRHITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSQ-YPWIEWDQSSMS 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
G P R++ +I + L
Sbjct: 175 GKLLHLPERADIPENIKEQL 194
>gi|33594507|ref|NP_882151.1| DNA-directed RNA polymerase subunit alpha [Bordetella pertussis
Tohama I]
gi|33594778|ref|NP_882421.1| DNA-directed RNA polymerase subunit alpha [Bordetella parapertussis
12822]
gi|33599050|ref|NP_886610.1| DNA-directed RNA polymerase subunit alpha [Bordetella
bronchiseptica RB50]
gi|384205804|ref|YP_005591543.1| DNA-directed RNA polymerase subunit alpha [Bordetella pertussis CS]
gi|408416769|ref|YP_006627476.1| DNA-directed RNA polymerase subunit alpha [Bordetella pertussis
18323]
gi|410417871|ref|YP_006898320.1| DNA-directed RNA polymerase subunit alpha [Bordetella
bronchiseptica MO149]
gi|427812310|ref|ZP_18979374.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
1289]
gi|427817360|ref|ZP_18984423.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
D445]
gi|427823097|ref|ZP_18990159.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
Bbr77]
gi|61234210|sp|P0A4E5.1|RPOA_BORPE RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|61234215|sp|P0A4E6.1|RPOA_BORBR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|61234219|sp|P0A4E7.1|RPOA_BORPA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|406284|emb|CAA81390.1| RNA polymerase alpha subunit [Bordetella pertussis Tohama I]
gi|33564583|emb|CAE43899.1| DNA-directed RNA polymerase alpha chain [Bordetella pertussis
Tohama I]
gi|33564854|emb|CAE39798.1| DNA-directed RNA polymerase alpha chain [Bordetella parapertussis]
gi|33575096|emb|CAE30559.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
RB50]
gi|332383918|gb|AEE68765.1| DNA-directed RNA polymerase subunit alpha [Bordetella pertussis CS]
gi|401778939|emb|CCJ64408.1| DNA-directed RNA polymerase alpha chain [Bordetella pertussis
18323]
gi|408445166|emb|CCJ56814.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
MO149]
gi|410563310|emb|CCN20844.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
1289]
gi|410568360|emb|CCN16394.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
D445]
gi|410588362|emb|CCN03419.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
Bbr77]
Length = 328
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 108/128 (84%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G++HAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS++ GV+ED++DI+LNLKGV+ KL+NRD L L+K G V+ASDIEL D+E++NP+
Sbjct: 66 YSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNGAGAVVASDIELPHDVEIINPD 125
Query: 319 HIIAHLSD 326
H+I +L+D
Sbjct: 126 HLICNLTD 133
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 88/105 (83%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT------PVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQ+AR+L+DQ++VFAALE PV+ ++DP+LLRPVDDLELTVRS
Sbjct: 211 EEAVRQAARILMDQISVFAALEGAGDAYEPPVR-----GTPQIDPVLLRPVDDLELTVRS 265
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 266 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 310
>gi|146297258|ref|YP_001181029.1| 30S ribosomal protein S4 [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|172046028|sp|A4XLQ3.1|RS4_CALS8 RecName: Full=30S ribosomal protein S4
gi|145410834|gb|ABP67838.1| ribosomal protein S4 [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 208
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 124/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M++YIGP +LCRREG+ LFLK R KC RP GQHG+ + S+YG Q R
Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDR-CYTEKCAFAKRPYPPGQHGQ-ERKKLSEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF ++KG GE +L LLE R DNVVYR+GF+S+R EAR
Sbjct: 59 EKQKVKRIYGVLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH F VN K VNI SY + GD+I V+EK+K + R E W+ DA+
Sbjct: 119 LVSHAHFKVNGKTVNIPSYLVDVGDVIEVKEKSKSKPRFIEIKEKYAKRPSPKWLEKDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I + L
Sbjct: 179 NLVGKVIALPTREDIDMPIKEHL 201
>gi|374368998|ref|ZP_09627038.1| 50S ribosomal protein L17 [Cupriavidus basilensis OR16]
gi|373099455|gb|EHP40536.1| 50S ribosomal protein L17 [Cupriavidus basilensis OR16]
Length = 131
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFNELGPRYNARPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|421747400|ref|ZP_16185115.1| 50S ribosomal protein L17 [Cupriavidus necator HPC(L)]
gi|409773983|gb|EKN55677.1| 50S ribosomal protein L17 [Cupriavidus necator HPC(L)]
Length = 131
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFNELGPRYATRPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|223038545|ref|ZP_03608839.1| ribosomal protein S4 [Campylobacter rectus RM3267]
gi|255321747|ref|ZP_05362902.1| ribosomal protein S4 [Campylobacter showae RM3277]
gi|222880402|gb|EEF15489.1| ribosomal protein S4 [Campylobacter rectus RM3267]
gi|255301227|gb|EET80489.1| ribosomal protein S4 [Campylobacter showae RM3277]
Length = 208
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG+ S+ S+YG Q R
Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERR-LAGKSALDKRPYAPGQHGQ-RRSKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGISEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY+++ G + V EK+K +I +++L+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSYRVQAGAKVEVIEKSKNNPQIVRAIDLTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F P R E
Sbjct: 179 KKFGIFTRTPEREE 192
>gi|225010541|ref|ZP_03701012.1| ribosomal protein S4 [Flavobacteria bacterium MS024-3C]
gi|225005370|gb|EEG43321.1| ribosomal protein S4 [Flavobacteria bacterium MS024-3C]
Length = 201
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 130/202 (64%), Gaps = 10/202 (4%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHG--RISGSRTSDYGYQFRE 58
MARY GPK K+ RR G +F + +S + K + PGQHG R G + S+Y Q E
Sbjct: 1 MARYTGPKTKIARRFGEAIFGED--KSFE---KRNFPPGQHGNNRRRG-KESEYKVQLME 54
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQK K YGILEKQFR F + R KG TGE++L+ ESR DNVVYRMG S++RS ARQL
Sbjct: 55 KQKAKYTYGILEKQFRNIFAKANRSKGVTGEVLLQFCESRLDNVVYRMGVSTSRSGARQL 114
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SHR VN IVNI SY +K GD++ VREK+K I+++L +S S + WIT +++K
Sbjct: 115 VSHRHITVNGSIVNIPSYSLKAGDVVGVREKSKSLQTISDALSVS--SNVYEWITWNSEK 172
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
MEG F + P R + +I + L
Sbjct: 173 MEGSFVAVPERLQIPENIKEQL 194
>gi|255014789|ref|ZP_05286915.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_7]
gi|256841040|ref|ZP_05546547.1| ribosomal protein S4 [Parabacteroides sp. D13]
gi|298375808|ref|ZP_06985764.1| ribosomal protein S4 [Bacteroides sp. 3_1_19]
gi|410102802|ref|ZP_11297727.1| 30S ribosomal protein S4 [Parabacteroides sp. D25]
gi|423330297|ref|ZP_17308081.1| 30S ribosomal protein S4 [Parabacteroides distasonis CL03T12C09]
gi|256736883|gb|EEU50210.1| ribosomal protein S4 [Parabacteroides sp. D13]
gi|298266845|gb|EFI08502.1| ribosomal protein S4 [Bacteroides sp. 3_1_19]
gi|409231913|gb|EKN24761.1| 30S ribosomal protein S4 [Parabacteroides distasonis CL03T12C09]
gi|409237929|gb|EKN30724.1| 30S ribosomal protein S4 [Parabacteroides sp. D25]
Length = 201
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 124/200 (62%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP+ ++ R+ G +F A + L K + PGQHG +TS+YG Q REKQ
Sbjct: 1 MARYTGPRTRIARKFGEAIF--GADKVLSKK---NYPPGQHGNSRKRKTSEYGIQLREKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LEKQFR F + +R KG TGE++L+LLE R DNVVYR+G + TR+ ARQL+S
Sbjct: 56 KAKYTYGVLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVYRLGIAPTRAAARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR V+ +VNI SY +KPG +I VREK+K IA++L HS + WI D M
Sbjct: 116 HRHITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSK-YPWIEWDQSSMS 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
G P R++ +I + L
Sbjct: 175 GKLLHLPERADIPENIKEQL 194
>gi|344200761|ref|YP_004785087.1| 30S ribosomal protein S4 [Acidithiobacillus ferrivorans SS3]
gi|343776205|gb|AEM48761.1| ribosomal protein S4 [Acidithiobacillus ferrivorans SS3]
Length = 208
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 136/203 (66%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MA+Y GP +LCRREG LFLK + KC + +R PGQHG+ G R S+YG Q R
Sbjct: 1 MAKYTGPSCRLCRREGGKLFLK-GEKCFSDKCPVSIRAYAPGQHGQRRG-RVSEYGGQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK++R+YG+LE QFRRYF ++ +G TGE++L+ LE R DNV YR+GF ++R+EARQ
Sbjct: 59 EKQKIRRIYGVLEGQFRRYFQRASQTRGVTGELLLRFLELRLDNVAYRLGFGASRAEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++ H LVN + V+I SY+++ GD++SV E A+ RI +++E + W+++D
Sbjct: 119 VVRHGHILVNGRRVDIPSYQVRAGDVVSVAESARAHMRIVSAVEAAAGRGFPEWVSMDTT 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+++ K+ P R + A D+N+ +
Sbjct: 179 ELKATIKAVPVREDIAPDLNEQV 201
>gi|15645907|ref|NP_208086.1| 30S ribosomal protein S4 [Helicobacter pylori 26695]
gi|217032048|ref|ZP_03437548.1| hypothetical protein HPB128_16g8 [Helicobacter pylori B128]
gi|298735681|ref|YP_003728206.1| 30S ribosomal protein S4 [Helicobacter pylori B8]
gi|384891656|ref|YP_005765789.1| 30S ribosomal protein S4p:S9e [Helicobacter pylori 908]
gi|385224338|ref|YP_005784264.1| 30S ribosomal protein S4 [Helicobacter pylori 2017]
gi|385232193|ref|YP_005792112.1| 30S ribosomal protein S4 [Helicobacter pylori 2018]
gi|410024528|ref|YP_006893781.1| 30S ribosomal protein S4 [Helicobacter pylori Rif1]
gi|410502295|ref|YP_006936822.1| 30S ribosomal protein S4 [Helicobacter pylori Rif2]
gi|410682813|ref|YP_006935215.1| 30S ribosomal protein S4 [Helicobacter pylori 26695]
gi|419416547|ref|ZP_13957090.1| 30S ribosomal protein S4 [Helicobacter pylori P79]
gi|420402386|ref|ZP_14901575.1| ribosomal protein S4 [Helicobacter pylori CPY6081]
gi|421718864|ref|ZP_16158159.1| ribosomal protein S4 [Helicobacter pylori R038b]
gi|2500400|sp|P56011.1|RS4_HELPY RecName: Full=30S ribosomal protein S4
gi|2314460|gb|AAD08337.1| ribosomal protein S4 (rps4) [Helicobacter pylori 26695]
gi|216946196|gb|EEC24804.1| hypothetical protein HPB128_16g8 [Helicobacter pylori B128]
gi|298354870|emb|CBI65742.1| small subunit ribosomal protein S4 [Helicobacter pylori B8]
gi|307637965|gb|ADN80415.1| SSU ribosomal protein S4p:S9e [Helicobacter pylori 908]
gi|325996570|gb|ADZ51975.1| 30S ribosomal protein S4 [Helicobacter pylori 2018]
gi|325998160|gb|ADZ50368.1| 30S ribosomal protein S4 [Helicobacter pylori 2017]
gi|384375053|gb|EIE30388.1| 30S ribosomal protein S4 [Helicobacter pylori P79]
gi|393016783|gb|EJB17940.1| ribosomal protein S4 [Helicobacter pylori CPY6081]
gi|407219722|gb|EKE89536.1| ribosomal protein S4 [Helicobacter pylori R038b]
gi|409894454|gb|AFV42512.1| 30S ribosomal protein S4 [Helicobacter pylori 26695]
gi|409896185|gb|AFV44107.1| 30S ribosomal protein S4 [Helicobacter pylori Rif1]
gi|409897846|gb|AFV45700.1| 30S ribosomal protein S4 [Helicobacter pylori Rif2]
Length = 208
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K +++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|412340641|ref|YP_006969396.1| DNA-directed RNA polymerase subunit alpha [Bordetella
bronchiseptica 253]
gi|408770475|emb|CCJ55269.1| DNA-directed RNA polymerase alpha chain [Bordetella bronchiseptica
253]
Length = 328
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 108/128 (84%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G++HAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS++ GV+ED++DI+LNLKGV+ KL+NRD L L+K G V+ASDIEL D+E++NP+
Sbjct: 66 YSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNGAGTVVASDIELPHDVEIINPD 125
Query: 319 HIIAHLSD 326
H+I +L+D
Sbjct: 126 HLICNLTD 133
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 88/105 (83%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT------PVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQ+AR+L+DQ++VFAALE PV+ ++DP+LLRPVDDLELTVRS
Sbjct: 211 EEAVRQAARILMDQISVFAALEGAGDAYEPPVR-----GTPQIDPVLLRPVDDLELTVRS 265
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 266 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 310
>gi|420404104|ref|ZP_14903289.1| ribosomal protein S4 [Helicobacter pylori CPY6261]
gi|393018976|gb|EJB20122.1| ribosomal protein S4 [Helicobacter pylori CPY6261]
Length = 208
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-TKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K +++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKNNSQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|157737265|ref|YP_001489948.1| 30S ribosomal protein S4 [Arcobacter butzleri RM4018]
gi|315636982|ref|ZP_07892206.1| 30S ribosomal protein S4 [Arcobacter butzleri JV22]
gi|384155677|ref|YP_005538492.1| 30S ribosomal protein S4 [Arcobacter butzleri ED-1]
gi|172045648|sp|A8ETK5.1|RS4_ARCB4 RecName: Full=30S ribosomal protein S4
gi|157699119|gb|ABV67279.1| 30S ribosomal protein S4 [Arcobacter butzleri RM4018]
gi|315478812|gb|EFU69521.1| 30S ribosomal protein S4 [Arcobacter butzleri JV22]
gi|345469231|dbj|BAK70682.1| 30S ribosomal protein S4 [Arcobacter butzleri ED-1]
Length = 208
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP K+ RR DL LK RR L K L+ RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYRGPVEKIERRLDADLGLKGERR-LSGKSALEKRPFAPGQHGQ-RRAKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVK MYGI EKQFR YF E R +G TG I++ L+E R DNVV+RMGF++TR+ ARQ
Sbjct: 59 EKQKVKFMYGISEKQFRNYFKEAVRREGNTGAILISLIEQRLDNVVFRMGFATTRANARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
+H LV+ K V+I SY +KPG I ++EK+K ++ +LEL+ + W+ VD
Sbjct: 119 FTTHGHVLVDGKKVDIPSYLVKPGQKIEIKEKSKSNPQVVRALELTNQTGMVDWVNVDKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G+F P R E + + L
Sbjct: 179 KVFGIFTRIPAREEVVIPVEERL 201
>gi|299065442|emb|CBJ36611.1| 50S ribosomal subunit protein L17 [Ralstonia solanacearum CMR15]
Length = 132
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFNELGPRYATRPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|237751463|ref|ZP_04581943.1| 30S ribosomal protein S4 [Helicobacter bilis ATCC 43879]
gi|229372829|gb|EEO23220.1| 30S ribosomal protein S4 [Helicobacter bilis ATCC 43879]
Length = 208
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 126/202 (62%), Gaps = 3/202 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARR--SLDSKCKLDLRPGQHGRISGSRTSDYGYQFRE 58
MARY GP K+ RR G+ L LK RR ++ K D PGQHG G + SDYG Q RE
Sbjct: 1 MARYRGPVEKIERRLGVSLALKGERRLAGKSAREKRDYGPGQHGMRRG-KISDYGLQLRE 59
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQK K MYGI EKQFR F E R +G TGE +++LLE R DNVVYRMGF++TR ARQL
Sbjct: 60 KQKAKFMYGISEKQFRSIFKEANRQEGNTGENLIRLLELRLDNVVYRMGFATTRRFARQL 119
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
++H LV+ K V+I S++IK G + VREK+K +I SL+L++ W+ +D K
Sbjct: 120 VTHGHILVDGKRVDIPSFQIKQGQKVEVREKSKNNVQIVRSLDLTDQIGIVPWVDIDKDK 179
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
G+F P RSE I + L
Sbjct: 180 KFGIFTRNPERSEVEIPIEERL 201
>gi|419796965|ref|ZP_14322476.1| DNA-directed RNA polymerase, alpha subunit, partial [Neisseria
sicca VK64]
gi|385698967|gb|EIG29293.1| DNA-directed RNA polymerase, alpha subunit, partial [Neisseria
sicca VK64]
Length = 275
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 104/134 (77%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV IS
Sbjct: 3 NSTTEFLKPRQIDVDTLSTTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIS 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++DI+LN+KG++ KL+ R L LKK G V+A DIEL D+E
Sbjct: 63 GVLHEYSTVDGVQEDVVDILLNVKGIVFKLHGRGQVQLTLKKAGAGTVVAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP HII HL++N
Sbjct: 123 ILNPEHIICHLAEN 136
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIH 391
KAE+I+
Sbjct: 270 KAEDIY 275
>gi|241664505|ref|YP_002982865.1| 50S ribosomal protein L17 [Ralstonia pickettii 12D]
gi|309782861|ref|ZP_07677581.1| ribosomal protein L17 [Ralstonia sp. 5_7_47FAA]
gi|404397557|ref|ZP_10989347.1| 50S ribosomal protein L17 [Ralstonia sp. 5_2_56FAA]
gi|240866532|gb|ACS64193.1| ribosomal protein L17 [Ralstonia pickettii 12D]
gi|308918285|gb|EFP63962.1| ribosomal protein L17 [Ralstonia sp. 5_7_47FAA]
gi|348612672|gb|EGY62286.1| 50S ribosomal protein L17 [Ralstonia sp. 5_2_56FAA]
Length = 132
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 103/118 (87%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SLL++E+IKTT+PKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLLQHELIKTTVPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPR+ GGY RILK GFR GDNAPMA +ELL++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFNELGPRFATRPGGYTRILKFGFRQGDNAPMALVELLDR 118
>gi|163804148|ref|ZP_02197919.1| 30S ribosomal protein S4 [Vibrio sp. AND4]
gi|159172034|gb|EDP57005.1| 30S ribosomal protein S4 [Vibrio sp. AND4]
Length = 143
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 104/136 (76%)
Query: 65 MYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124
MYG+LEKQFR Y+ + ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+SH+A
Sbjct: 1 MYGVLEKQFRNYYKDAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 60
Query: 125 LVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFK 184
LVN K+VN+ S+K+ D++S+REKAK+Q RI +LE++E +WI VD KMEG FK
Sbjct: 61 LVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKMEGTFK 120
Query: 185 SEPNRSEFANDINDLL 200
P RS+ + DIN+ L
Sbjct: 121 RMPERSDLSADINEQL 136
>gi|408906895|emb|CCM12425.1| SSU ribosomal protein S4p (S9e) [Helicobacter heilmannii ASB1.4]
Length = 208
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G KL RR GI L LK RR L K LD R PGQHG+ G + SDYG Q R
Sbjct: 1 MARYRGAVEKLERRFGISLALKGERR-LSGKSALDKRAYGPGQHGQRRG-KISDYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F E R++G TGE +++LLE R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKAMYGISEKQFRSIFREANRMEGNTGENLVRLLERRLDNVVYRMGFATTRSFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I S IK G I + EK+K+ +I S+ELS+ + +WI VD
Sbjct: 119 LVTHGHILVDGKRMDIPSAFIKHGQKIELIEKSKENPQILRSIELSKQTGMVAWIDVDQD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E A I + L
Sbjct: 179 KKFGIFTRYPEREEVAIPIEERL 201
>gi|402495230|ref|ZP_10841961.1| 30S ribosomal protein S4 [Aquimarina agarilytica ZC1]
Length = 201
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 125/200 (62%), Gaps = 10/200 (5%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHG--RISGSRTSDYGYQFRE 58
MARY GPK K+ R+ G +F +S + K + PGQHG R G + S+Y Q E
Sbjct: 1 MARYTGPKTKIARKFGQAIF--GDDKSFE---KRNYPPGQHGNNRRRGKK-SEYAIQLME 54
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQK K YGILEKQFR F R G TGE++L+L ESR DNV YRMG S++RS ARQL
Sbjct: 55 KQKAKYTYGILEKQFRNMFDRATRATGITGEVLLQLCESRLDNVAYRMGLSTSRSGARQL 114
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SHR VN +IVNI SY+IKPGD++ VREK+K I NSL S S + WIT +++
Sbjct: 115 VSHRHITVNGEIVNIPSYQIKPGDVVGVREKSKSLEVINNSLSAS--SEVYEWITWNSET 172
Query: 179 MEGVFKSEPNRSEFANDIND 198
EG F S P R + IN+
Sbjct: 173 KEGTFVSVPQRIQIPETINE 192
>gi|419595548|ref|ZP_14130648.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23336]
gi|380573330|gb|EIA95478.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23336]
Length = 208
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 125/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGAKKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARRDGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I V EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEVIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|410470871|ref|YP_006894152.1| DNA-directed RNA polymerase subunit alpha [Bordetella parapertussis
Bpp5]
gi|408440981|emb|CCJ47390.1| DNA-directed RNA polymerase alpha chain [Bordetella parapertussis
Bpp5]
Length = 328
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 108/128 (84%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G++HAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS++ GV+ED++DI+LNLKGV+ KL+NRD L L+K G V+ASDIEL D+E++NP+
Sbjct: 66 YSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNGAGAVVASDIELPHDVEIINPD 125
Query: 319 HIIAHLSD 326
H+I +L+D
Sbjct: 126 HLICNLTD 133
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 87/105 (82%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT------PVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQ+AR+L+DQ++VFAALE PV+ ++DP+LL PVDDLELTVRS
Sbjct: 211 EEAVRQAARILMDQISVFAALEGAGDAYEPPVR-----GTPQIDPVLLCPVDDLELTVRS 265
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 266 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 310
>gi|420486387|ref|ZP_14985001.1| ribosomal protein S4 [Helicobacter pylori Hp P-4]
gi|420516897|ref|ZP_15015355.1| ribosomal protein S4 [Helicobacter pylori Hp P-4c]
gi|420518597|ref|ZP_15017046.1| ribosomal protein S4 [Helicobacter pylori Hp P-4d]
gi|393100312|gb|EJC00889.1| ribosomal protein S4 [Helicobacter pylori Hp P-4]
gi|393121022|gb|EJC21506.1| ribosomal protein S4 [Helicobacter pylori Hp P-4d]
gi|393121620|gb|EJC22102.1| ribosomal protein S4 [Helicobacter pylori Hp P-4c]
Length = 208
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQ-RRAKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKCLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|121609260|ref|YP_997067.1| DNA-directed RNA polymerase subunit alpha [Verminephrobacter
eiseniae EF01-2]
gi|158514002|sp|A1WK92.1|RPOA_VEREI RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|121553900|gb|ABM58049.1| DNA-directed RNA polymerase, alpha subunit [Verminephrobacter
eiseniae EF01-2]
Length = 330
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 109/128 (85%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG +HAKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKAINVEQLGHHHAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
EYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ +V A DI+ D+E+VNP
Sbjct: 64 EYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGMVTARDIQTPHDVEIVNP 123
Query: 318 NHIIAHLS 325
+H+IA+LS
Sbjct: 124 DHVIANLS 131
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 85/106 (80%), Gaps = 10/106 (9%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE + P ++S DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGGELAAFDAPTGPRGNASF---DPILLRPVDELELTVR 266
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 267 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 312
>gi|419660621|ref|ZP_14191067.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380636006|gb|EIB53752.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-979]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 125/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARRDGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I V EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEVIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|315453711|ref|YP_004073981.1| 30S ribosomal protein S4 [Helicobacter felis ATCC 49179]
gi|315132763|emb|CBY83391.1| 30S ribosomal protein S4 [Helicobacter felis ATCC 49179]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 125/196 (63%), Gaps = 5/196 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G KL RR GI LFLK RR L K LD R PGQHG+ G + SDYG Q R
Sbjct: 1 MARYRGAVEKLERRFGISLFLKGERR-LSGKSALDKRAYGPGQHGQRRG-KISDYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F E R++G TGE +++LLE R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKAMYGISEKQFRSIFREANRMEGNTGENLVRLLERRLDNVVYRMGFATTRSFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I S IK G I ++EK+K+ +I ++EL+ WI VD
Sbjct: 119 LVTHGHILVDGKRMDIPSAFIKSGQKIEIKEKSKENPQITRAVELTNQVGIVPWIDVDKD 178
Query: 178 KMEGVFKSEPNRSEFA 193
K G+F P R E +
Sbjct: 179 KKFGIFTRYPERDEVS 194
>gi|358638961|dbj|BAL26258.1| DNA-directed RNA polymerase subunit alpha [Azoarcus sp. KH32C]
Length = 326
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 106/129 (82%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRIIDV+++ A+V MEPFERG+G+TLGNALRR+LLSS+ G APTEV I G L
Sbjct: 4 NSLLKPRIIDVQSISPVQARVTMEPFERGFGHTLGNALRRILLSSLPGYAPTEVTIEGVL 63
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYS+L+GV+EDI+D++LNLKGV+LKL+NR L L K G+ VV A+DIE D+E++N
Sbjct: 64 HEYSTLDGVREDIVDLLLNLKGVVLKLHNRSETTLRLSKSGEGVVTAADIEGGHDVEIIN 123
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 124 PDHVIAHLA 132
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 90/102 (88%), Gaps = 3/102 (2%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANC 384
D EEAIR +ARVL+DQL+VFA LE T PV ++ S+ + +DP+LLRPVDDLELTVRSANC
Sbjct: 208 DPEEAIRYAARVLMDQLSVFADLEGTAPVVEQ--STTQVIDPVLLRPVDDLELTVRSANC 265
Query: 385 LKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
LKAENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 LKAENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASRG 307
>gi|113869404|ref|YP_727893.1| 50S ribosomal protein L17 [Ralstonia eutropha H16]
gi|194290996|ref|YP_002006903.1| 50S ribosomal protein l17 [Cupriavidus taiwanensis LMG 19424]
gi|339327489|ref|YP_004687182.1| 50S ribosomal protein L17 [Cupriavidus necator N-1]
gi|123328833|sp|Q0K646.1|RL17_RALEH RecName: Full=50S ribosomal protein L17
gi|226712137|sp|B3R7E2.1|RL17_CUPTR RecName: Full=50S ribosomal protein L17
gi|113528180|emb|CAJ94525.1| LSU ribosomal protein L17 [Ralstonia eutropha H16]
gi|193224831|emb|CAQ70842.1| 50S ribosomal subunit protein L17 [Cupriavidus taiwanensis LMG
19424]
gi|338167646|gb|AEI78701.1| 50S ribosomal protein L17 [Cupriavidus necator N-1]
Length = 131
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTT+PKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTVPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFTELGPRYATRPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|73542837|ref|YP_297357.1| 50S ribosomal protein L17 [Ralstonia eutropha JMP134]
gi|119365893|sp|Q46WH0.1|RL17_RALEJ RecName: Full=50S ribosomal protein L17
gi|72120250|gb|AAZ62513.1| LSU ribosomal protein L17P [Ralstonia eutropha JMP134]
Length = 131
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTSSHRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSSHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFTELGPRYNARPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|254458831|ref|ZP_05072255.1| ribosomal protein S4 [Sulfurimonas gotlandica GD1]
gi|373867158|ref|ZP_09603556.1| ribosomal protein S4 [Sulfurimonas gotlandica GD1]
gi|207084597|gb|EDZ61885.1| ribosomal protein S4 [Sulfurimonas gotlandica GD1]
gi|372469259|gb|EHP29463.1| ribosomal protein S4 [Sulfurimonas gotlandica GD1]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP K+ RR G+ L LK RR L K L+ RP GQHG+ + S+YG Q
Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERR-LAGKSALEKRPYGPGQHGQRR-KKVSEYGLQLN 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F+E R +G TG ++ L+ESR DNVVYRMGF+STR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRALFVEAKRREGNTGTNLITLIESRLDNVVYRMGFASTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY++KPG I VRE +KK +I ++EL+ + W+ +DA
Sbjct: 119 LVTHGHLLVDGKKLDIPSYRVKPGQKIEVRESSKKNNQIVRAMELTNQTGLAPWVDIDAD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G+F P R E + + L
Sbjct: 179 KVFGIFTRLPEREEVVIPVEERL 201
>gi|57238607|ref|YP_179738.1| 30S ribosomal protein S4 [Campylobacter jejuni RM1221]
gi|148925738|ref|ZP_01809426.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205355608|ref|ZP_03222378.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
CG8421]
gi|384443958|ref|YP_005660210.1| 30S ribosomal protein S4p [Campylobacter jejuni subsp. jejuni S3]
gi|419619962|ref|ZP_14153417.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 51494]
gi|419642859|ref|ZP_14174636.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni ATCC
33560]
gi|419644648|ref|ZP_14176224.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9081]
gi|419646884|ref|ZP_14178335.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 53161]
gi|419667990|ref|ZP_14197935.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-10]
gi|419671156|ref|ZP_14200830.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-14]
gi|419673312|ref|ZP_14202784.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 51037]
gi|419679192|ref|ZP_14208207.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 87459]
gi|419696252|ref|ZP_14224118.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23210]
gi|424846670|ref|ZP_18271264.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NW]
gi|81675536|sp|Q5HSJ7.1|RS4_CAMJR RecName: Full=30S ribosomal protein S4
gi|57167411|gb|AAW36190.1| ribosomal protein S4 [Campylobacter jejuni RM1221]
gi|145845748|gb|EDK22839.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205346385|gb|EDZ33018.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
CG8421]
gi|315059045|gb|ADT73374.1| SSU ribosomal protein S4p [Campylobacter jejuni subsp. jejuni S3]
gi|356485968|gb|EHI15955.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NW]
gi|380602044|gb|EIB22341.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 51494]
gi|380621672|gb|EIB40465.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9081]
gi|380622638|gb|EIB41382.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 53161]
gi|380623784|gb|EIB42470.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni ATCC
33560]
gi|380645016|gb|EIB62105.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-10]
gi|380649773|gb|EIB66457.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-14]
gi|380653948|gb|EIB70333.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 51037]
gi|380657987|gb|EIB74026.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 87459]
gi|380674995|gb|EIB89912.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23210]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I + EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|57504894|ref|ZP_00370869.1| ribosomal protein S4 [Campylobacter coli RM2228]
gi|305432399|ref|ZP_07401561.1| 30S ribosomal protein S4 [Campylobacter coli JV20]
gi|419536793|ref|ZP_14076268.1| 30S ribosomal protein S4 [Campylobacter coli 111-3]
gi|419538232|ref|ZP_14077593.1| 30S ribosomal protein S4 [Campylobacter coli 90-3]
gi|419541243|ref|ZP_14080458.1| 30S ribosomal protein S4 [Campylobacter coli Z163]
gi|419542683|ref|ZP_14081799.1| 30S ribosomal protein S4 [Campylobacter coli 2548]
gi|419543813|ref|ZP_14082788.1| 30S ribosomal protein S4 [Campylobacter coli 2553]
gi|419546936|ref|ZP_14085680.1| 30S ribosomal protein S4 [Campylobacter coli 2680]
gi|419549214|ref|ZP_14087818.1| 30S ribosomal protein S4 [Campylobacter coli 2685]
gi|419550232|ref|ZP_14088747.1| 30S ribosomal protein S4 [Campylobacter coli 2688]
gi|419553084|ref|ZP_14091356.1| 30S ribosomal protein S4 [Campylobacter coli 2692]
gi|419554522|ref|ZP_14092660.1| 30S ribosomal protein S4 [Campylobacter coli 2698]
gi|419556969|ref|ZP_14094938.1| 30S ribosomal protein S4 [Campylobacter coli 84-2]
gi|419557384|ref|ZP_14095296.1| 30S ribosomal protein S4 [Campylobacter coli 80352]
gi|419560445|ref|ZP_14098087.1| 30S ribosomal protein S4 [Campylobacter coli 86119]
gi|419561992|ref|ZP_14099518.1| 30S ribosomal protein S4 [Campylobacter coli 1091]
gi|419564471|ref|ZP_14101850.1| 30S ribosomal protein S4 [Campylobacter coli 1098]
gi|419566217|ref|ZP_14103482.1| 30S ribosomal protein S4 [Campylobacter coli 1148]
gi|419567734|ref|ZP_14104888.1| 30S ribosomal protein S4 [Campylobacter coli 1417]
gi|419570451|ref|ZP_14107493.1| 30S ribosomal protein S4 [Campylobacter coli 7--1]
gi|419571289|ref|ZP_14108245.1| 30S ribosomal protein S4 [Campylobacter coli 132-6]
gi|419574449|ref|ZP_14111194.1| 30S ribosomal protein S4 [Campylobacter coli 1891]
gi|419575680|ref|ZP_14112364.1| 30S ribosomal protein S4 [Campylobacter coli 1909]
gi|419576748|ref|ZP_14113316.1| 30S ribosomal protein S4 [Campylobacter coli 59-2]
gi|419579895|ref|ZP_14116284.1| 30S ribosomal protein S4 [Campylobacter coli 1948]
gi|419581714|ref|ZP_14118005.1| 30S ribosomal protein S4 [Campylobacter coli 1957]
gi|419583338|ref|ZP_14119521.1| 30S ribosomal protein S4 [Campylobacter coli 1961]
gi|419586918|ref|ZP_14122873.1| 30S ribosomal protein S4 [Campylobacter coli 67-8]
gi|419588273|ref|ZP_14124097.1| 30S ribosomal protein S4 [Campylobacter coli 317/04]
gi|419590923|ref|ZP_14126285.1| 30S ribosomal protein S4 [Campylobacter coli 37/05]
gi|419593826|ref|ZP_14129029.1| 30S ribosomal protein S4 [Campylobacter coli LMG 9854]
gi|419596250|ref|ZP_14131256.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23341]
gi|419599028|ref|ZP_14133898.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23342]
gi|419600375|ref|ZP_14135135.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23344]
gi|419602689|ref|ZP_14137265.1| 30S ribosomal protein S4 [Campylobacter coli 151-9]
gi|419605067|ref|ZP_14139518.1| 30S ribosomal protein S4 [Campylobacter coli LMG 9853]
gi|419607205|ref|ZP_14141543.1| 30S ribosomal protein S4 [Campylobacter coli LMG 9860]
gi|419608237|ref|ZP_14142433.1| 30S ribosomal protein S4 [Campylobacter coli H6]
gi|419611367|ref|ZP_14145401.1| 30S ribosomal protein S4 [Campylobacter coli H8]
gi|419611865|ref|ZP_14145753.1| 30S ribosomal protein S4 [Campylobacter coli H9]
gi|419615155|ref|ZP_14148913.1| 30S ribosomal protein S4 [Campylobacter coli H56]
gi|419617030|ref|ZP_14150662.1| 30S ribosomal protein S4 [Campylobacter coli Z156]
gi|57019322|gb|EAL56024.1| ribosomal protein S4 [Campylobacter coli RM2228]
gi|304444438|gb|EFM37089.1| 30S ribosomal protein S4 [Campylobacter coli JV20]
gi|380514908|gb|EIA41103.1| 30S ribosomal protein S4 [Campylobacter coli Z163]
gi|380517338|gb|EIA43455.1| 30S ribosomal protein S4 [Campylobacter coli 111-3]
gi|380518720|gb|EIA44812.1| 30S ribosomal protein S4 [Campylobacter coli 90-3]
gi|380521558|gb|EIA47282.1| 30S ribosomal protein S4 [Campylobacter coli 2680]
gi|380522360|gb|EIA48045.1| 30S ribosomal protein S4 [Campylobacter coli 2548]
gi|380526152|gb|EIA51628.1| 30S ribosomal protein S4 [Campylobacter coli 2553]
gi|380526536|gb|EIA51996.1| 30S ribosomal protein S4 [Campylobacter coli 2685]
gi|380529762|gb|EIA54890.1| 30S ribosomal protein S4 [Campylobacter coli 2692]
gi|380531173|gb|EIA56206.1| 30S ribosomal protein S4 [Campylobacter coli 2688]
gi|380532566|gb|EIA57542.1| 30S ribosomal protein S4 [Campylobacter coli 2698]
gi|380534099|gb|EIA58928.1| 30S ribosomal protein S4 [Campylobacter coli 84-2]
gi|380537081|gb|EIA61662.1| 30S ribosomal protein S4 [Campylobacter coli 86119]
gi|380542264|gb|EIA66504.1| 30S ribosomal protein S4 [Campylobacter coli 1091]
gi|380542331|gb|EIA66569.1| 30S ribosomal protein S4 [Campylobacter coli 1098]
gi|380542445|gb|EIA66679.1| 30S ribosomal protein S4 [Campylobacter coli 80352]
gi|380547035|gb|EIA70968.1| 30S ribosomal protein S4 [Campylobacter coli 7--1]
gi|380547210|gb|EIA71136.1| 30S ribosomal protein S4 [Campylobacter coli 1148]
gi|380547449|gb|EIA71369.1| 30S ribosomal protein S4 [Campylobacter coli 1417]
gi|380549620|gb|EIA73399.1| 30S ribosomal protein S4 [Campylobacter coli 1891]
gi|380553109|gb|EIA76638.1| 30S ribosomal protein S4 [Campylobacter coli 1909]
gi|380553910|gb|EIA77406.1| 30S ribosomal protein S4 [Campylobacter coli 132-6]
gi|380555924|gb|EIA79207.1| 30S ribosomal protein S4 [Campylobacter coli 1948]
gi|380558540|gb|EIA81717.1| 30S ribosomal protein S4 [Campylobacter coli 1957]
gi|380559172|gb|EIA82335.1| 30S ribosomal protein S4 [Campylobacter coli 59-2]
gi|380563247|gb|EIA86086.1| 30S ribosomal protein S4 [Campylobacter coli 1961]
gi|380565536|gb|EIA88265.1| 30S ribosomal protein S4 [Campylobacter coli 67-8]
gi|380568751|gb|EIA91212.1| 30S ribosomal protein S4 [Campylobacter coli LMG 9854]
gi|380569665|gb|EIA92102.1| 30S ribosomal protein S4 [Campylobacter coli 37/05]
gi|380570495|gb|EIA92917.1| 30S ribosomal protein S4 [Campylobacter coli 317/04]
gi|380576198|gb|EIA98256.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23342]
gi|380576579|gb|EIA98632.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23341]
gi|380578769|gb|EIB00594.1| 30S ribosomal protein S4 [Campylobacter coli LMG 9853]
gi|380580655|gb|EIB02396.1| 30S ribosomal protein S4 [Campylobacter coli 151-9]
gi|380583110|gb|EIB04689.1| 30S ribosomal protein S4 [Campylobacter coli LMG 23344]
gi|380585486|gb|EIB06836.1| 30S ribosomal protein S4 [Campylobacter coli LMG 9860]
gi|380585843|gb|EIB07171.1| 30S ribosomal protein S4 [Campylobacter coli H6]
gi|380588285|gb|EIB09421.1| 30S ribosomal protein S4 [Campylobacter coli H8]
gi|380591614|gb|EIB12589.1| 30S ribosomal protein S4 [Campylobacter coli H9]
gi|380591852|gb|EIB12804.1| 30S ribosomal protein S4 [Campylobacter coli H56]
gi|380594270|gb|EIB15074.1| 30S ribosomal protein S4 [Campylobacter coli Z156]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 125/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARRDGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I V EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEVIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|340621244|ref|YP_004739695.1| 30S ribosomal protein S4 [Capnocytophaga canimorsus Cc5]
gi|339901509|gb|AEK22588.1| 30S ribosomal protein S4 [Capnocytophaga canimorsus Cc5]
Length = 201
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 131/201 (65%), Gaps = 8/201 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHG-RISGSRTSDYGYQFREK 59
MARY GPK K+ R+ G +F + +S + K + PGQHG ++ S+Y Q +EK
Sbjct: 1 MARYTGPKTKIARKFGEAIFGED--KSFEKK---NYPPGQHGINRRRAKKSEYAIQLQEK 55
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK K YGILE+QFR + + R K TGE++L+L ESR DNVV+RMG + TRS ARQL+
Sbjct: 56 QKAKYTYGILERQFRNMYEKAKRSKNVTGEVLLQLCESRLDNVVFRMGIAPTRSAARQLV 115
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
SHR VN +IVNI SY ++PGD++ VREK+K + I NS L+ +ST + WIT + +K+
Sbjct: 116 SHRHITVNGEIVNIPSYSLRPGDVVGVREKSKSLSVIENS--LAANSTVYEWITWNTEKL 173
Query: 180 EGVFKSEPNRSEFANDINDLL 200
EG F + P R + +I + L
Sbjct: 174 EGTFVAVPQRLQIPENIKEQL 194
>gi|319796379|ref|YP_004158019.1| 50S ribosomal protein L17 [Variovorax paradoxus EPS]
gi|315598842|gb|ADU39908.1| ribosomal protein L17 [Variovorax paradoxus EPS]
Length = 132
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH HG RKLNRTSSHRL ML+NM SL+ +E+IKTT+PKAKELRRV+EP++TL+KK TL
Sbjct: 1 MRHGHGLRKLNRTSSHRLAMLQNMMNSLIEHEVIKTTVPKAKELRRVIEPMITLAKKPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF LRDR +KLF++LGPR+ GGY RILKMGFRVGDNAPMA +EL+++
Sbjct: 61 ANKRLAFDRLRDRDSVVKLFADLGPRFAARPGGYTRILKMGFRVGDNAPMALVELVDR 118
>gi|420469408|ref|ZP_14968130.1| ribosomal protein S4 [Helicobacter pylori Hp H-10]
gi|393084375|gb|EJB85068.1| ribosomal protein S4 [Helicobacter pylori Hp H-10]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ +++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVHAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|17547711|ref|NP_521113.1| 50S ribosomal protein L17 [Ralstonia solanacearum GMI1000]
gi|300690187|ref|YP_003751182.1| 50S ribosomal subunit protein L17 [Ralstonia solanacearum PSI07]
gi|81768486|sp|Q8XV39.1|RL17_RALSO RecName: Full=50S ribosomal protein L17
gi|17430016|emb|CAD16701.1| probable 50s ribosomal subunit protein l17 [Ralstonia solanacearum
GMI1000]
gi|299077247|emb|CBJ49873.1| 50S ribosomal subunit protein L17 [Ralstonia solanacearum PSI07]
gi|344172704|emb|CCA85358.1| 50S ribosomal subunit protein L17 [Ralstonia syzygii R24]
Length = 132
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 102/118 (86%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTS+HRL MLRNM+ SL ++E+IKTTLPKAKELR+VVEP++TL+KK+T+
Sbjct: 1 MRHRHGLRKLNRTSAHRLAMLRNMSNSLFQHELIKTTLPKAKELRKVVEPLITLAKKDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ LRDR + KLF+ELGPRY GGY RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFARLRDRDMVTKLFTELGPRYATRPGGYTRILKFGFRQGDNAPMALVELVDR 118
>gi|403253592|ref|ZP_10919893.1| 30S ribosomal protein S4 [Thermotoga sp. EMP]
gi|402811126|gb|EJX25614.1| 30S ribosomal protein S4 [Thermotoga sp. EMP]
Length = 209
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 127/202 (62%), Gaps = 5/202 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG+ L+LK R D KC D RP GQHG+ ++ + YG Q R
Sbjct: 1 MARYTGPLCKLCRREGMKLYLKGERCYTD-KCAFDRRPYAPGQHGQ-RRTKLTQYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ VKR+YGILE+QF RY + + G T E ++++LESR DNVVYRMGF+ R +ARQ
Sbjct: 59 AKQTVKRIYGILERQFERYVEKAMQKAGDTRENLIQILESRLDNVVYRMGFAINRRQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K VNI SY ++P D++ +REK++ I ++E+++ + WI VD
Sbjct: 119 LVNHGHFLVNGKKVNIPSYLLRPNDVVELREKSRDLEVIKKAIEVNKDRSVVPWIEVDYD 178
Query: 178 KMEGVFKSEPNRSEFANDINDL 199
G F P+ E + DL
Sbjct: 179 NYRGTFLRYPSLEEVTDLPVDL 200
>gi|373458327|ref|ZP_09550094.1| ribosomal protein S4 [Caldithrix abyssi DSM 13497]
gi|371719991|gb|EHO41762.1| ribosomal protein S4 [Caldithrix abyssi DSM 13497]
Length = 204
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 127/198 (64%), Gaps = 3/198 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP+ K+ R+ G ++F L +K PGQHG + + SDY Q REKQ
Sbjct: 1 MARYKGPRGKIVRKFGENIFGNPKFDRLLAKKPYP--PGQHG-MKRKKVSDYALQLREKQ 57
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVK MYG+LEKQFRR+F + R+KG TGE +L+LLESR DN VYR+GF++TR++ARQ++
Sbjct: 58 KVKYMYGLLEKQFRRFFHKAERMKGVTGENLLQLLESRLDNTVYRLGFATTRAQARQMVL 117
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR +VN ++VNI S+ +KPGD+I VREK+++ +L+ + W+ +D M
Sbjct: 118 HRHIMVNGQVVNIPSFILKPGDVIQVREKSRRLAMFHEALKRVDADRMLPWLELDKANMT 177
Query: 181 GVFKSEPNRSEFANDIND 198
G F P R + ++ +
Sbjct: 178 GKFIDRPKREDIPVNVQE 195
>gi|419584526|ref|ZP_14120594.1| 30S ribosomal protein S4 [Campylobacter coli 202/04]
gi|380563902|gb|EIA86728.1| 30S ribosomal protein S4 [Campylobacter coli 202/04]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 125/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG + + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHG-VRKGKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARRDGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I V EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEVIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|86152218|ref|ZP_01070429.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 260.94]
gi|86153129|ref|ZP_01071334.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni HB93-13]
gi|121612243|ref|YP_001001237.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
81-176]
gi|153952009|ref|YP_001398874.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. doylei
269.97]
gi|157415814|ref|YP_001483070.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81116]
gi|167006130|ref|ZP_02271888.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
81-176]
gi|283956978|ref|ZP_06374450.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1336]
gi|384442168|ref|YP_005658471.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni M1]
gi|415747324|ref|ZP_11475974.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 327]
gi|419617702|ref|ZP_14151271.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
129-258]
gi|419622576|ref|ZP_14155805.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23216]
gi|419624857|ref|ZP_14157923.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23218]
gi|419626079|ref|ZP_14159078.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23223]
gi|419627618|ref|ZP_14160516.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23263]
gi|419630382|ref|ZP_14163065.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 60004]
gi|419632350|ref|ZP_14164898.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23264]
gi|419633986|ref|ZP_14166403.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23269]
gi|419635898|ref|ZP_14168190.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 55037]
gi|419639677|ref|ZP_14171696.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 86605]
gi|419640065|ref|ZP_14172005.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23357]
gi|419648626|ref|ZP_14179960.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9217]
gi|419652053|ref|ZP_14183138.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-894]
gi|419654694|ref|ZP_14185608.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419656674|ref|ZP_14187456.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419657527|ref|ZP_14188178.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-1]
gi|419663151|ref|ZP_14193353.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419666406|ref|ZP_14196425.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419669860|ref|ZP_14199623.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-11]
gi|419680379|ref|ZP_14209240.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
140-16]
gi|419683371|ref|ZP_14212073.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1213]
gi|419687580|ref|ZP_14215959.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1798]
gi|419689036|ref|ZP_14217343.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1854]
gi|419691049|ref|ZP_14219232.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1893]
gi|419692930|ref|ZP_14220988.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1928]
gi|419698161|ref|ZP_14225883.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23211]
gi|424849097|ref|ZP_18273566.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni D2600]
gi|152060941|sp|A1W1J6.1|RS4_CAMJJ RecName: Full=30S ribosomal protein S4
gi|171769457|sp|A7H5U4.1|RS4_CAMJD RecName: Full=30S ribosomal protein S4
gi|172047193|sp|A8FNQ6.1|RS4_CAMJ8 RecName: Full=30S ribosomal protein S4
gi|85840707|gb|EAQ57958.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 260.94]
gi|85844014|gb|EAQ61224.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni HB93-13]
gi|87249805|gb|EAQ72764.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81-176]
gi|152939455|gb|ABS44196.1| ribosomal protein S4 [Campylobacter jejuni subsp. doylei 269.97]
gi|157386778|gb|ABV53093.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81116]
gi|283791479|gb|EFC30276.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1336]
gi|307748451|gb|ADN91721.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni M1]
gi|315931273|gb|EFV10243.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 327]
gi|356487734|gb|EHI17676.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni D2600]
gi|380596693|gb|EIB17373.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
129-258]
gi|380597591|gb|EIB18111.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23218]
gi|380599153|gb|EIB19530.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23216]
gi|380603778|gb|EIB23841.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23223]
gi|380605297|gb|EIB25272.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 60004]
gi|380606535|gb|EIB26442.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23263]
gi|380609065|gb|EIB28779.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23264]
gi|380610427|gb|EIB30019.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23269]
gi|380611460|gb|EIB31009.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 55037]
gi|380615673|gb|EIB34910.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 86605]
gi|380619870|gb|EIB38899.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23357]
gi|380626137|gb|EIB44632.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9217]
gi|380629883|gb|EIB48132.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380630447|gb|EIB48682.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380634384|gb|EIB52268.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380634648|gb|EIB52519.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380641066|gb|EIB58462.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380643464|gb|EIB60689.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380646044|gb|EIB63036.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
1997-11]
gi|380659049|gb|EIB75038.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1213]
gi|380660542|gb|EIB76487.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
140-16]
gi|380662155|gb|EIB77936.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1798]
gi|380664154|gb|EIB79764.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1854]
gi|380667801|gb|EIB83207.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1893]
gi|380668288|gb|EIB83650.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1928]
gi|380675999|gb|EIB90887.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
23211]
Length = 208
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I + EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|320160440|ref|YP_004173664.1| 30S ribosomal protein S4 [Anaerolinea thermophila UNI-1]
gi|319994293|dbj|BAJ63064.1| 30S ribosomal protein S4 [Anaerolinea thermophila UNI-1]
Length = 212
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 125/206 (60%), Gaps = 7/206 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRT---SDYGY 54
M +Y+GP KLCRREG LFLK R KC + R PGQHGR R+ SDY
Sbjct: 1 MGKYLGPVCKLCRREGEKLFLK-GERCYSPKCSFEKRGFAPGQHGRTQQGRSERESDYAR 59
Query: 55 QFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSE 114
Q R KQK +R+YGI E+QFRRYF R KG TG +L+ LE R DNVV+RMGF+S+R++
Sbjct: 60 QLRAKQKARRVYGIFERQFRRYFGLALRKKGLTGLNLLQTLEMRLDNVVFRMGFASSRAQ 119
Query: 115 ARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITV 174
ARQL++H VN +I S +KPGDIISV+E A+ T + L++ + T WI
Sbjct: 120 ARQLVNHGHIQVNNHRADIPSMLVKPGDIISVKESARSLTYWKDLLDVVDRRTCPMWIDR 179
Query: 175 DAKKMEGVFKSEPNRSEFANDINDLL 200
D K + G P RSE ++N+ L
Sbjct: 180 DTKNLSGRILRLPERSEIDGNLNEQL 205
>gi|296137039|ref|YP_003644281.1| DNA-directed RNA polymerase subunit alpha [Thiomonas intermedia
K12]
gi|295797161|gb|ADG31951.1| DNA-directed RNA polymerase, alpha subunit [Thiomonas intermedia
K12]
Length = 328
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 109/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LL+P+ I V++LG N +KV++EPFERGYG+TLGNALRRV+LSS++G APTEV I+G LHE
Sbjct: 5 LLRPKSIQVESLGHNRSKVVLEPFERGYGHTLGNALRRVMLSSLVGYAPTEVSINGVLHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS ++G+QED+I ++LNLKGV+LKL+NRD L+L+K G+ VV A+DI+ D+E+VNP+
Sbjct: 65 YSVVDGLQEDVIGVLLNLKGVVLKLHNRDEVTLSLRKEGEGVVTAADIQTPHDVEIVNPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 86/101 (85%), Gaps = 2/101 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSL--EKVDPILLRPVDDLELTVRSANCL 385
EEAIR SAR+LV+QL+VFA+LE + +++ + DPILLRPVD+LELTVRSANCL
Sbjct: 210 EEAIRSSARILVEQLSVFASLEGAETTEAAEAAAGGQTYDPILLRPVDELELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAENI+ IGDLIQRSE ELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 270 KAENIYYIGDLIQRSETELLKTPNLGRKSLNEIKEVLAARG 310
>gi|15612279|ref|NP_223932.1| 30S ribosomal protein S4 [Helicobacter pylori J99]
gi|384888179|ref|YP_005762690.1| 30S ribosomal protein S4 [Helicobacter pylori 52]
gi|384889910|ref|YP_005764212.1| 30S ribosomal protein S4 [Helicobacter pylori v225d]
gi|385225948|ref|YP_005785873.1| 30S ribosomal protein S4 [Helicobacter pylori 83]
gi|420442700|ref|ZP_14941633.1| ribosomal protein S4 [Helicobacter pylori Hp H-36]
gi|420466076|ref|ZP_14964839.1| ribosomal protein S4 [Helicobacter pylori Hp H-6]
gi|421712358|ref|ZP_16151692.1| ribosomal protein S4 [Helicobacter pylori R030b]
gi|421715503|ref|ZP_16154820.1| ribosomal protein S4 [Helicobacter pylori R036d]
gi|421720326|ref|ZP_16159609.1| ribosomal protein S4 [Helicobacter pylori R046Wa]
gi|7388210|sp|Q9ZJT4.1|RS4_HELPJ RecName: Full=30S ribosomal protein S4
gi|4155842|gb|AAD06816.1| 30S RIBOSOMAL PROTEIN S4 [Helicobacter pylori J99]
gi|261840009|gb|ACX99774.1| 30S ribosomal protein S4 [Helicobacter pylori 52]
gi|297380476|gb|ADI35363.1| ribosomal protein S4 [Helicobacter pylori v225d]
gi|332674094|gb|AEE70911.1| 30S ribosomal protein S4 [Helicobacter pylori 83]
gi|393057275|gb|EJB58178.1| ribosomal protein S4 [Helicobacter pylori Hp H-36]
gi|393079624|gb|EJB80356.1| ribosomal protein S4 [Helicobacter pylori Hp H-6]
gi|407209631|gb|EKE79519.1| ribosomal protein S4 [Helicobacter pylori R030b]
gi|407215259|gb|EKE85099.1| ribosomal protein S4 [Helicobacter pylori R036d]
gi|407220365|gb|EKE90173.1| ribosomal protein S4 [Helicobacter pylori R046Wa]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-TKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|424782466|ref|ZP_18209313.1| SSU ribosomal protein S4p (S9e) [Campylobacter showae CSUNSWCD]
gi|421959786|gb|EKU11394.1| SSU ribosomal protein S4p (S9e) [Campylobacter showae CSUNSWCD]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K L+ R PGQHG+ S+ S+YG Q R
Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERR-LAGKSALEKRNYAPGQHGQ-RRSKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGISEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I SY+++ G + V EK+K +I +++L+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSYRVQAGSKVEVIEKSKNNPQIVRAIDLTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F P R E
Sbjct: 179 KKFGIFTRTPEREE 192
>gi|399051330|ref|ZP_10741252.1| ribosomal protein S4, bacterial/organelle type [Brevibacillus sp.
CF112]
gi|433542923|ref|ZP_20499341.1| 30S ribosomal protein S4 [Brevibacillus agri BAB-2500]
gi|398050907|gb|EJL43252.1| ribosomal protein S4, bacterial/organelle type [Brevibacillus sp.
CF112]
gi|432185761|gb|ELK43244.1| 30S ribosomal protein S4 [Brevibacillus agri BAB-2500]
Length = 199
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 131/200 (65%), Gaps = 8/200 (4%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M+RY GP+ KL RR GI L K + PGQHG + + S+YG Q +EKQ
Sbjct: 1 MSRYTGPRHKLARRLGISL------DGTGKDIKRNFPPGQHGHNNRRKLSEYGIQLQEKQ 54
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++ M+G+ EKQFRR F + +++ G GE +KLLESR DN+VYRMGF+ TR ARQL++
Sbjct: 55 KLRHMFGLNEKQFRRTFDQASKMAGVVGENFMKLLESRLDNLVYRMGFAPTRPAARQLVN 114
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H FLVN K VNI SY+++PGD+IS+REK++ I +SLE S + P ++I+ + E
Sbjct: 115 HGHFLVNGKKVNIPSYRVQPGDVISIREKSRGLQLIKDSLE-SRNFLP-NYISFNDAAAE 172
Query: 181 GVFKSEPNRSEFANDINDLL 200
G + P+R E ++IN++L
Sbjct: 173 GTYTRLPDREEMPSEINEVL 192
>gi|387908539|ref|YP_006338873.1| 30S ribosomal protein S4 [Helicobacter pylori XZ274]
gi|387573474|gb|AFJ82182.1| 30S ribosomal protein S4 [Helicobacter pylori XZ274]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQ-RRTKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKNNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|15644222|ref|NP_229273.1| 30S ribosomal protein S4 [Thermotoga maritima MSB8]
gi|418045531|ref|ZP_12683626.1| ribosomal protein S4 [Thermotoga maritima MSB8]
gi|7388196|sp|Q9X1I3.1|RS4_THEMA RecName: Full=30S ribosomal protein S4
gi|4982039|gb|AAD36541.1|AE001798_6 ribosomal protein S4 [Thermotoga maritima MSB8]
gi|351676416|gb|EHA59569.1| ribosomal protein S4 [Thermotoga maritima MSB8]
Length = 209
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 126/202 (62%), Gaps = 5/202 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG+ L+LK R D KC D RP GQHG+ ++ + YG Q R
Sbjct: 1 MARYTGPLCKLCRREGMKLYLKGERCYTD-KCAFDRRPYAPGQHGQ-RRTKLTQYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ VKR+YGILE+QF RY + + G T E ++++LE+R DNVVYRMGF+ R +ARQ
Sbjct: 59 AKQTVKRIYGILERQFERYVEKAMQKAGDTRENLIQILEARLDNVVYRMGFAINRRQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K VNI SY ++P D++ VREK++ I ++E ++ + WI VD
Sbjct: 119 LVNHGHFLVNGKKVNIPSYLLRPNDVVEVREKSRDLEVIKKAIEANKERSIVPWIEVDYD 178
Query: 178 KMEGVFKSEPNRSEFANDINDL 199
G F P+ E + DL
Sbjct: 179 NYRGTFLRYPSLEEVTDLPVDL 200
>gi|385227486|ref|YP_005787410.1| 30S ribosomal protein S4 [Helicobacter pylori SNT49]
gi|344332399|gb|AEN17429.1| 30S ribosomal protein S4 [Helicobacter pylori SNT49]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKTMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|57242510|ref|ZP_00370448.1| ribosomal protein S4 [Campylobacter upsaliensis RM3195]
gi|315639080|ref|ZP_07894248.1| 30S ribosomal protein S4 [Campylobacter upsaliensis JV21]
gi|57016795|gb|EAL53578.1| ribosomal protein S4 [Campylobacter upsaliensis RM3195]
gi|315480856|gb|EFU71492.1| 30S ribosomal protein S4 [Campylobacter upsaliensis JV21]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 127/194 (65%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARRG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARKEGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN + V+I S++++ G I V EK+K +I+ +++L+ + +W+ V+
Sbjct: 119 LVTHGHILVNGRRVDIPSFRVEAGAKIEVAEKSKNNPQISRAIDLTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRYGIFTRKPEREE 192
>gi|384136704|ref|YP_005519418.1| 30S ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290789|gb|AEJ44899.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 201
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 123/193 (63%), Gaps = 5/193 (2%)
Query: 9 AKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFREKQKVKRM 65
+LCRREGI L+LK R KC +D RP GQHG+ RT++YG Q REKQK +R
Sbjct: 2 CRLCRREGIKLYLKGER-CFSEKCAVDKRPYAPGQHGQ-GRKRTTEYGMQLREKQKARRY 59
Query: 66 YGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFL 125
YG+LE QF RY+ E AR +G TGE +L+LLESR DNVVYR+GF+++R+EARQL+ H
Sbjct: 60 YGVLENQFERYYEEAARRRGVTGETLLQLLESRLDNVVYRLGFAASRAEARQLVRHGHIQ 119
Query: 126 VNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKS 185
VN + V+I S+ +K GD++SVREK++ R+ EL T +W+ +DA+
Sbjct: 120 VNGRRVDIPSFLVKEGDVVSVREKSRDNARLKELAELIPSRTIPAWLELDAENWTAKVLR 179
Query: 186 EPNRSEFANDIND 198
P R E + +
Sbjct: 180 RPARDEIDAPVQE 192
>gi|262383848|ref|ZP_06076984.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_33B]
gi|301312006|ref|ZP_07217928.1| ribosomal protein S4 [Bacteroides sp. 20_3]
gi|423339438|ref|ZP_17317179.1| 30S ribosomal protein S4 [Parabacteroides distasonis CL09T03C24]
gi|262294746|gb|EEY82678.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_33B]
gi|300830108|gb|EFK60756.1| ribosomal protein S4 [Bacteroides sp. 20_3]
gi|409230819|gb|EKN23680.1| 30S ribosomal protein S4 [Parabacteroides distasonis CL09T03C24]
Length = 201
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 124/200 (62%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP+ ++ R+ G +F A + L K + PGQHG +TS+YG Q REKQ
Sbjct: 1 MARYTGPRTRIARKFGEAIF--GADKVLSKK---NYPPGQHGNSRKRKTSEYGIQLREKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LEKQFR F + +R KG TGE++L+LLE R DN+VYR+G + TR+ ARQL+S
Sbjct: 56 KAKYTYGVLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNMVYRLGMAPTRAAARQLVS 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR V+ +VNI SY +KPG +I VREK+K IA++L HS + WI D M
Sbjct: 116 HRHITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSK-YPWIEWDQSSMS 174
Query: 181 GVFKSEPNRSEFANDINDLL 200
G P R++ +I + L
Sbjct: 175 GKLLHLPERTDIPENIKEQL 194
>gi|302876506|ref|YP_003845139.1| 30S ribosomal protein S4 [Clostridium cellulovorans 743B]
gi|307687178|ref|ZP_07629624.1| 30S ribosomal protein S4 [Clostridium cellulovorans 743B]
gi|302579363|gb|ADL53375.1| ribosomal protein S4 [Clostridium cellulovorans 743B]
Length = 206
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 131/203 (64%), Gaps = 7/203 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG L LK R KC D R PGQHG+ S + S+YG Q R
Sbjct: 1 MARYTGPVCRLCRREGEKLNLKGDR-CFTDKCAFDRRGYAPGQHGQ-SKKKLSNYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK KR+YG+LE QFRR + + +++G TGE ++KLLE R DNV+YR+G+ ++R+EARQ
Sbjct: 59 EKQKAKRIYGVLENQFRRTYDKADKMRGITGENLVKLLEMRLDNVIYRLGYGNSRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K V+I SY +K GD+I+VREK+ + T + + P +W++ D
Sbjct: 119 LVTHGHFLVNGKKVDIPSYVVKAGDVITVREKS-RATETFKTFAENPRVLP-AWLSGDIA 176
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
EG + P+R + +N+ L
Sbjct: 177 TFEGKVVTAPSREDIDVPLNETL 199
>gi|315125002|ref|YP_004067006.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|419693483|ref|ZP_14221472.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9872]
gi|315018724|gb|ADT66817.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|380672589|gb|EIB87745.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9872]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARREGNTGILLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I + EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|283953794|ref|ZP_06371325.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 414]
gi|283794835|gb|EFC33573.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 414]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K V+I S+++K G I + EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHVLVDGKRVDIPSFRVKAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|167629495|ref|YP_001679994.1| 30S ribosomal protein S4 [Heliobacterium modesticaldum Ice1]
gi|226699071|sp|B0TC84.1|RS4_HELMI RecName: Full=30S ribosomal protein S4
gi|167592235|gb|ABZ83983.1| 30S ribosomal protein s4 [Heliobacterium modesticaldum Ice1]
Length = 208
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG L+LK R KC +D R PGQHG+ + S+YG Q R
Sbjct: 1 MARYTGPVCRLCRREGAKLYLK-GERCYTGKCAVDRRTYAPGQHGQ-GRKKISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK +R+YGILE QFR YF E R +G TGE +L+LLE+R DNVV+R+GF+ +R+EARQ
Sbjct: 59 EKQKARRVYGILEGQFRAYFAEADRQQGVTGENLLRLLETRLDNVVFRLGFARSRNEARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
+ H F +N K VNI S +++ GD+I ++EK+K ++ TP +W+ +D
Sbjct: 119 FVLHNHFTLNGKKVNIPSIQLRVGDVIQLKEKSKDTPLFKEIVDGLGQKTPPAWLELDVN 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + ++ + L
Sbjct: 179 TLSGRVIALPKREDIDTNLQEHL 201
>gi|261400077|ref|ZP_05986202.1| DNA-directed RNA polymerase, alpha subunit [Neisseria lactamica
ATCC 23970]
gi|313667466|ref|YP_004047750.1| DNA-directed RNA polymerase subunit alpha [Neisseria lactamica
020-06]
gi|421863372|ref|ZP_16295070.1| DNA-directed RNA polymerase, alpha subunit [Neisseria lactamica
Y92-1009]
gi|269210302|gb|EEZ76757.1| DNA-directed RNA polymerase, alpha subunit [Neisseria lactamica
ATCC 23970]
gi|309379134|emb|CBX22265.1| DNA-directed RNA polymerase, alpha subunit [Neisseria lactamica
Y92-1009]
gi|313004928|emb|CBN86354.1| DNA-directed RNA polymerase alpha chain [Neisseria lactamica
020-06]
Length = 328
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 104/134 (77%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV T + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTAEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++DI+LN+KG++ KL+ R L LKK G VV A DIEL D+E
Sbjct: 63 GVLHEYSTVDGVQEDVVDILLNIKGIVFKLHGRSQVQLVLKKTGSGVVSAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP+H+I HL+DN
Sbjct: 123 ILNPDHVICHLADN 136
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DP+LLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFANLQGTPVE-EVEEKAPPIDPVLLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|395010706|ref|ZP_10394058.1| DNA-directed RNA polymerase, alpha subunit [Acidovorax sp. CF316]
gi|394311233|gb|EJE48609.1| DNA-directed RNA polymerase, alpha subunit [Acidovorax sp. CF316]
Length = 330
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 107/128 (83%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKAINVEQLGHNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
EYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ VV A DI+ D+E+VNP
Sbjct: 64 EYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVNP 123
Query: 318 NHIIAHLS 325
+H+IA LS
Sbjct: 124 DHVIATLS 131
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 85/106 (80%), Gaps = 10/106 (9%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE + P +++ DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGGELAAFDAPAGPRGNATF---DPILLRPVDELELTVR 266
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 267 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 312
>gi|109946782|ref|YP_664010.1| 30S ribosomal protein S4 [Helicobacter acinonychis str. Sheeba]
gi|188528082|ref|YP_001910769.1| 30S ribosomal protein S4 [Helicobacter pylori Shi470]
gi|207092545|ref|ZP_03240332.1| 30S ribosomal protein S4 [Helicobacter pylori HPKX_438_AG0C1]
gi|208435192|ref|YP_002266858.1| 30S ribosomal protein S4 [Helicobacter pylori G27]
gi|210135453|ref|YP_002301892.1| 30S ribosomal protein S4 [Helicobacter pylori P12]
gi|217033613|ref|ZP_03439041.1| hypothetical protein HP9810_899g49 [Helicobacter pylori 98-10]
gi|254779836|ref|YP_003057942.1| 30S ribosomal protein S4 [Helicobacter pylori B38]
gi|308183404|ref|YP_003927531.1| 30S ribosomal protein S4 [Helicobacter pylori PeCan4]
gi|308185046|ref|YP_003929179.1| 30S ribosomal protein S4 [Helicobacter pylori SJM180]
gi|383750338|ref|YP_005425441.1| 30S ribosomal protein S4 [Helicobacter pylori ELS37]
gi|384893282|ref|YP_005767375.1| 30S ribosomal protein S4 [Helicobacter pylori Cuz20]
gi|384894817|ref|YP_005768866.1| 30S ribosomal protein S4 [Helicobacter pylori Sat464]
gi|384897976|ref|YP_005773404.1| 30S ribosomal protein S4 [Helicobacter pylori Lithuania75]
gi|384898472|ref|YP_005773851.1| 30S ribosomal protein S4 [Helicobacter pylori F30]
gi|385217984|ref|YP_005779460.1| 30S ribosomal protein S4 [Helicobacter pylori F16]
gi|385219527|ref|YP_005781002.1| 30S ribosomal protein S4 [Helicobacter pylori Gambia94/24]
gi|385221170|ref|YP_005782642.1| 30S ribosomal protein S4 [Helicobacter pylori India7]
gi|385222715|ref|YP_005771848.1| 30S ribosomal protein S4 [Helicobacter pylori SouthAfrica7]
gi|385230592|ref|YP_005790508.1| 30S ribosomal protein S4 [Helicobacter pylori Puno135]
gi|385249745|ref|YP_005777964.1| 30S ribosomal protein S4 [Helicobacter pylori F57]
gi|386746716|ref|YP_006219933.1| 30S ribosomal protein S4 [Helicobacter pylori HUP-B14]
gi|386751665|ref|YP_006224885.1| 30S ribosomal protein S4 [Helicobacter pylori Shi417]
gi|386753222|ref|YP_006226441.1| 30S ribosomal protein S4 [Helicobacter pylori Shi169]
gi|386754760|ref|YP_006227978.1| 30S ribosomal protein S4 [Helicobacter pylori Shi112]
gi|419418614|ref|ZP_13958928.1| 30S ribosomal protein S4 [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|420399366|ref|ZP_14898573.1| ribosomal protein S4 [Helicobacter pylori CPY1962]
gi|420405641|ref|ZP_14904815.1| ribosomal protein S4 [Helicobacter pylori CPY6271]
gi|420410671|ref|ZP_14909810.1| ribosomal protein S4 [Helicobacter pylori NQ4200]
gi|420412672|ref|ZP_14911799.1| ribosomal protein S4 [Helicobacter pylori NQ4228]
gi|420414241|ref|ZP_14913362.1| ribosomal protein S4 [Helicobacter pylori NQ4099]
gi|420415802|ref|ZP_14914915.1| ribosomal protein S4 [Helicobacter pylori NQ4053]
gi|420417612|ref|ZP_14916709.1| ribosomal protein S4 [Helicobacter pylori NQ4044]
gi|420419102|ref|ZP_14918193.1| ribosomal protein S4 [Helicobacter pylori NQ4076]
gi|420422561|ref|ZP_14921638.1| ribosomal protein S4 [Helicobacter pylori NQ4110]
gi|420424195|ref|ZP_14923263.1| ribosomal protein S4 [Helicobacter pylori Hp A-4]
gi|420425801|ref|ZP_14924861.1| ribosomal protein S4 [Helicobacter pylori Hp A-5]
gi|420427593|ref|ZP_14926636.1| ribosomal protein S4 [Helicobacter pylori Hp A-9]
gi|420429338|ref|ZP_14928371.1| ribosomal protein S4 [Helicobacter pylori Hp A-17]
gi|420432726|ref|ZP_14931739.1| ribosomal protein S4 [Helicobacter pylori Hp H-16]
gi|420435346|ref|ZP_14934346.1| ribosomal protein S4 [Helicobacter pylori Hp H-27]
gi|420437749|ref|ZP_14936730.1| ribosomal protein S4 [Helicobacter pylori Hp H-28]
gi|420439363|ref|ZP_14938328.1| ribosomal protein S4 [Helicobacter pylori Hp H-29]
gi|420441012|ref|ZP_14939963.1| ribosomal protein S4 [Helicobacter pylori Hp H-30]
gi|420444322|ref|ZP_14943246.1| ribosomal protein S4 [Helicobacter pylori Hp H-41]
gi|420446025|ref|ZP_14944928.1| ribosomal protein S4 [Helicobacter pylori Hp H-42]
gi|420449371|ref|ZP_14948242.1| ribosomal protein S4 [Helicobacter pylori Hp H-44]
gi|420450822|ref|ZP_14949677.1| ribosomal protein S4 [Helicobacter pylori Hp H-45]
gi|420452673|ref|ZP_14951516.1| ribosomal protein S4 [Helicobacter pylori Hp A-6]
gi|420454058|ref|ZP_14952892.1| ribosomal protein S4 [Helicobacter pylori Hp A-8]
gi|420455825|ref|ZP_14954651.1| ribosomal protein S4 [Helicobacter pylori Hp A-14]
gi|420457630|ref|ZP_14956444.1| ribosomal protein S4 [Helicobacter pylori Hp A-16]
gi|420459465|ref|ZP_14958267.1| ribosomal protein S4 [Helicobacter pylori Hp A-26]
gi|420460787|ref|ZP_14959584.1| ribosomal protein S4 [Helicobacter pylori Hp A-27]
gi|420462647|ref|ZP_14961428.1| ribosomal protein S4 [Helicobacter pylori Hp H-3]
gi|420464335|ref|ZP_14963109.1| ribosomal protein S4 [Helicobacter pylori Hp H-4]
gi|420467617|ref|ZP_14966367.1| ribosomal protein S4 [Helicobacter pylori Hp H-9]
gi|420471215|ref|ZP_14969918.1| ribosomal protein S4 [Helicobacter pylori Hp H-11]
gi|420472945|ref|ZP_14971629.1| ribosomal protein S4 [Helicobacter pylori Hp H-18]
gi|420474729|ref|ZP_14973403.1| ribosomal protein S4 [Helicobacter pylori Hp H-19]
gi|420476172|ref|ZP_14974839.1| ribosomal protein S4 [Helicobacter pylori Hp H-21]
gi|420479705|ref|ZP_14978351.1| ribosomal protein S4 [Helicobacter pylori Hp H-34]
gi|420481365|ref|ZP_14980004.1| ribosomal protein S4 [Helicobacter pylori Hp P-1]
gi|420482913|ref|ZP_14981547.1| ribosomal protein S4 [Helicobacter pylori Hp P-2]
gi|420484604|ref|ZP_14983227.1| ribosomal protein S4 [Helicobacter pylori Hp P-3]
gi|420487933|ref|ZP_14986536.1| ribosomal protein S4 [Helicobacter pylori Hp P-8]
gi|420489763|ref|ZP_14988355.1| ribosomal protein S4 [Helicobacter pylori Hp P-11]
gi|420493200|ref|ZP_14991773.1| ribosomal protein S4 [Helicobacter pylori Hp P-15]
gi|420494612|ref|ZP_14993180.1| ribosomal protein S4 [Helicobacter pylori Hp P-16]
gi|420496582|ref|ZP_14995145.1| ribosomal protein S4 [Helicobacter pylori Hp P-23]
gi|420498358|ref|ZP_14996917.1| ribosomal protein S4 [Helicobacter pylori Hp P-25]
gi|420499418|ref|ZP_14997974.1| ribosomal protein S4 [Helicobacter pylori Hp P-26]
gi|420500855|ref|ZP_14999400.1| ribosomal protein S4 [Helicobacter pylori Hp P-30]
gi|420503319|ref|ZP_15001853.1| ribosomal protein S4 [Helicobacter pylori Hp P-41]
gi|420504878|ref|ZP_15003402.1| ribosomal protein S4 [Helicobacter pylori Hp P-62]
gi|420505681|ref|ZP_15004197.1| ribosomal protein S4 [Helicobacter pylori Hp P-74]
gi|420511808|ref|ZP_15010293.1| ribosomal protein S4 [Helicobacter pylori Hp P-1b]
gi|420513379|ref|ZP_15011857.1| ribosomal protein S4 [Helicobacter pylori Hp P-2b]
gi|420514956|ref|ZP_15013425.1| ribosomal protein S4 [Helicobacter pylori Hp P-3b]
gi|420520151|ref|ZP_15018589.1| ribosomal protein S4 [Helicobacter pylori Hp H-5b]
gi|420521810|ref|ZP_15020239.1| ribosomal protein S4 [Helicobacter pylori Hp P-8b]
gi|420523695|ref|ZP_15022113.1| ribosomal protein S4 [Helicobacter pylori Hp P-11b]
gi|420526105|ref|ZP_15024506.1| ribosomal protein S4 [Helicobacter pylori Hp P-15b]
gi|420528592|ref|ZP_15026983.1| ribosomal protein S4 [Helicobacter pylori Hp P-25c]
gi|420529372|ref|ZP_15027760.1| ribosomal protein S4 [Helicobacter pylori Hp P-25d]
gi|420531828|ref|ZP_15030199.1| ribosomal protein S4 [Helicobacter pylori Hp P-28b]
gi|421710766|ref|ZP_16150116.1| ribosomal protein S4 [Helicobacter pylori R018c]
gi|421714078|ref|ZP_16153402.1| ribosomal protein S4 [Helicobacter pylori R32b]
gi|421717386|ref|ZP_16156691.1| ribosomal protein S4 [Helicobacter pylori R037c]
gi|421722231|ref|ZP_16161498.1| ribosomal protein S4 [Helicobacter pylori R055a]
gi|421724002|ref|ZP_16163251.1| ribosomal protein S4 [Helicobacter pylori R056a]
gi|425433410|ref|ZP_18813945.1| ribosomal protein S4 [Helicobacter pylori GAM100Ai]
gi|425789831|ref|YP_007017751.1| 30S ribosomal protein S4 [Helicobacter pylori Aklavik117]
gi|425790374|ref|YP_007018291.1| 30S ribosomal protein S4 [Helicobacter pylori Aklavik86]
gi|444374910|ref|ZP_21174212.1| 30S ribosomal protein S4 [Helicobacter pylori A45]
gi|123362789|sp|Q17ZB5.1|RS4_HELAH RecName: Full=30S ribosomal protein S4
gi|226699072|sp|B6JND4.1|RS4_HELP2 RecName: Full=30S ribosomal protein S4
gi|226699073|sp|B5Z8U3.1|RS4_HELPG RecName: Full=30S ribosomal protein S4
gi|226699074|sp|B2UV57.1|RS4_HELPS RecName: Full=30S ribosomal protein S4
gi|109714003|emb|CAJ99011.1| 30S ribosomal protein S4 [Helicobacter acinonychis str. Sheeba]
gi|188144322|gb|ACD48739.1| 30S ribosomal protein S4 [Helicobacter pylori Shi470]
gi|208433121|gb|ACI27992.1| ribosomal protein S4 [Helicobacter pylori G27]
gi|210133421|gb|ACJ08412.1| 30S ribosomal protein S4 [Helicobacter pylori P12]
gi|216943959|gb|EEC23393.1| hypothetical protein HP9810_899g49 [Helicobacter pylori 98-10]
gi|254001748|emb|CAX29979.1| 30S ribosomal subunit protein S4 [Helicobacter pylori B38]
gi|308060966|gb|ADO02862.1| 30S ribosomal protein S4 [Helicobacter pylori SJM180]
gi|308062579|gb|ADO04467.1| 30S ribosomal protein S4 [Helicobacter pylori Cuz20]
gi|308064071|gb|ADO05958.1| 30S ribosomal protein S4 [Helicobacter pylori Sat464]
gi|308065589|gb|ADO07481.1| 30S ribosomal protein S4 [Helicobacter pylori PeCan4]
gi|317009977|gb|ADU80557.1| 30S ribosomal protein S4 [Helicobacter pylori India7]
gi|317011494|gb|ADU85241.1| 30S ribosomal protein S4 [Helicobacter pylori SouthAfrica7]
gi|317013081|gb|ADU83689.1| 30S ribosomal protein S4 [Helicobacter pylori Lithuania75]
gi|317014685|gb|ADU82121.1| 30S ribosomal protein S4 [Helicobacter pylori Gambia94/24]
gi|317178033|dbj|BAJ55822.1| 30S ribosomal protein S4 [Helicobacter pylori F16]
gi|317178415|dbj|BAJ56203.1| 30S ribosomal protein S4 [Helicobacter pylori F30]
gi|317182540|dbj|BAJ60324.1| 30S ribosomal protein S4 [Helicobacter pylori F57]
gi|344337030|gb|AEN18991.1| 30S ribosomal protein S4 [Helicobacter pylori Puno135]
gi|380875084|gb|AFF20865.1| 30S ribosomal protein S4 [Helicobacter pylori ELS37]
gi|384373911|gb|EIE29357.1| 30S ribosomal protein S4 [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384552965|gb|AFI07913.1| 30S ribosomal protein S4 [Helicobacter pylori HUP-B14]
gi|384557923|gb|AFH98391.1| 30S ribosomal protein S4 [Helicobacter pylori Shi417]
gi|384559480|gb|AFH99947.1| 30S ribosomal protein S4 [Helicobacter pylori Shi169]
gi|384561018|gb|AFI01485.1| 30S ribosomal protein S4 [Helicobacter pylori Shi112]
gi|393011557|gb|EJB12744.1| ribosomal protein S4 [Helicobacter pylori CPY1962]
gi|393022316|gb|EJB23441.1| ribosomal protein S4 [Helicobacter pylori CPY6271]
gi|393026490|gb|EJB27589.1| ribosomal protein S4 [Helicobacter pylori NQ4228]
gi|393026907|gb|EJB28001.1| ribosomal protein S4 [Helicobacter pylori NQ4200]
gi|393027192|gb|EJB28285.1| ribosomal protein S4 [Helicobacter pylori NQ4099]
gi|393031707|gb|EJB32778.1| ribosomal protein S4 [Helicobacter pylori NQ4053]
gi|393032192|gb|EJB33261.1| ribosomal protein S4 [Helicobacter pylori NQ4076]
gi|393032414|gb|EJB33481.1| ribosomal protein S4 [Helicobacter pylori NQ4044]
gi|393036495|gb|EJB37534.1| ribosomal protein S4 [Helicobacter pylori NQ4110]
gi|393039483|gb|EJB40510.1| ribosomal protein S4 [Helicobacter pylori Hp A-4]
gi|393040699|gb|EJB41717.1| ribosomal protein S4 [Helicobacter pylori Hp A-5]
gi|393041091|gb|EJB42108.1| ribosomal protein S4 [Helicobacter pylori Hp A-9]
gi|393044668|gb|EJB45660.1| ribosomal protein S4 [Helicobacter pylori Hp A-17]
gi|393046816|gb|EJB47795.1| ribosomal protein S4 [Helicobacter pylori Hp H-16]
gi|393051274|gb|EJB52226.1| ribosomal protein S4 [Helicobacter pylori Hp H-28]
gi|393053114|gb|EJB54060.1| ribosomal protein S4 [Helicobacter pylori Hp H-27]
gi|393053985|gb|EJB54920.1| ribosomal protein S4 [Helicobacter pylori Hp H-29]
gi|393055132|gb|EJB56055.1| ribosomal protein S4 [Helicobacter pylori Hp H-30]
gi|393059201|gb|EJB60084.1| ribosomal protein S4 [Helicobacter pylori Hp H-41]
gi|393060194|gb|EJB61067.1| ribosomal protein S4 [Helicobacter pylori Hp H-42]
gi|393062674|gb|EJB63523.1| ribosomal protein S4 [Helicobacter pylori Hp H-44]
gi|393066157|gb|EJB66983.1| ribosomal protein S4 [Helicobacter pylori Hp H-45]
gi|393067235|gb|EJB68048.1| ribosomal protein S4 [Helicobacter pylori Hp A-6]
gi|393068531|gb|EJB69333.1| ribosomal protein S4 [Helicobacter pylori Hp A-8]
gi|393071463|gb|EJB72247.1| ribosomal protein S4 [Helicobacter pylori Hp A-14]
gi|393072155|gb|EJB72935.1| ribosomal protein S4 [Helicobacter pylori Hp A-26]
gi|393072866|gb|EJB73641.1| ribosomal protein S4 [Helicobacter pylori Hp A-16]
gi|393074944|gb|EJB75700.1| ribosomal protein S4 [Helicobacter pylori Hp A-27]
gi|393078048|gb|EJB78792.1| ribosomal protein S4 [Helicobacter pylori Hp H-3]
gi|393078409|gb|EJB79151.1| ribosomal protein S4 [Helicobacter pylori Hp H-4]
gi|393083194|gb|EJB83905.1| ribosomal protein S4 [Helicobacter pylori Hp H-9]
gi|393083757|gb|EJB84456.1| ribosomal protein S4 [Helicobacter pylori Hp H-11]
gi|393087418|gb|EJB88080.1| ribosomal protein S4 [Helicobacter pylori Hp H-18]
gi|393088467|gb|EJB89114.1| ribosomal protein S4 [Helicobacter pylori Hp H-19]
gi|393090079|gb|EJB90713.1| ribosomal protein S4 [Helicobacter pylori Hp H-21]
gi|393094088|gb|EJB94700.1| ribosomal protein S4 [Helicobacter pylori Hp H-34]
gi|393094373|gb|EJB94982.1| ribosomal protein S4 [Helicobacter pylori Hp P-1]
gi|393097517|gb|EJB98110.1| ribosomal protein S4 [Helicobacter pylori Hp P-2]
gi|393099931|gb|EJC00511.1| ribosomal protein S4 [Helicobacter pylori Hp P-3]
gi|393101323|gb|EJC01895.1| ribosomal protein S4 [Helicobacter pylori Hp P-8]
gi|393105184|gb|EJC05735.1| ribosomal protein S4 [Helicobacter pylori Hp P-11]
gi|393105794|gb|EJC06341.1| ribosomal protein S4 [Helicobacter pylori Hp P-15]
gi|393110292|gb|EJC10818.1| ribosomal protein S4 [Helicobacter pylori Hp P-16]
gi|393110640|gb|EJC11165.1| ribosomal protein S4 [Helicobacter pylori Hp P-23]
gi|393111597|gb|EJC12119.1| ribosomal protein S4 [Helicobacter pylori Hp P-25]
gi|393117213|gb|EJC17717.1| ribosomal protein S4 [Helicobacter pylori Hp P-74]
gi|393118479|gb|EJC18976.1| ribosomal protein S4 [Helicobacter pylori Hp P-1b]
gi|393125433|gb|EJC25893.1| ribosomal protein S4 [Helicobacter pylori Hp H-5b]
gi|393126044|gb|EJC26496.1| ribosomal protein S4 [Helicobacter pylori Hp P-11b]
gi|393126380|gb|EJC26831.1| ribosomal protein S4 [Helicobacter pylori Hp P-8b]
gi|393131410|gb|EJC31833.1| ribosomal protein S4 [Helicobacter pylori Hp P-15b]
gi|393132946|gb|EJC33364.1| ribosomal protein S4 [Helicobacter pylori Hp P-25c]
gi|393135678|gb|EJC36073.1| ribosomal protein S4 [Helicobacter pylori Hp P-28b]
gi|393138486|gb|EJC38868.1| ribosomal protein S4 [Helicobacter pylori Hp P-25d]
gi|393149415|gb|EJC49725.1| ribosomal protein S4 [Helicobacter pylori Hp P-41]
gi|393151237|gb|EJC51541.1| ribosomal protein S4 [Helicobacter pylori Hp P-30]
gi|393151620|gb|EJC51923.1| ribosomal protein S4 [Helicobacter pylori Hp P-26]
gi|393154024|gb|EJC54309.1| ribosomal protein S4 [Helicobacter pylori Hp P-62]
gi|393155796|gb|EJC56067.1| ribosomal protein S4 [Helicobacter pylori Hp P-2b]
gi|393156286|gb|EJC56554.1| ribosomal protein S4 [Helicobacter pylori Hp P-3b]
gi|407209232|gb|EKE79135.1| ribosomal protein S4 [Helicobacter pylori R018c]
gi|407213391|gb|EKE83248.1| ribosomal protein S4 [Helicobacter pylori R32b]
gi|407218431|gb|EKE88256.1| ribosomal protein S4 [Helicobacter pylori R037c]
gi|407223372|gb|EKE93162.1| ribosomal protein S4 [Helicobacter pylori R055a]
gi|407223677|gb|EKE93462.1| ribosomal protein S4 [Helicobacter pylori R056a]
gi|410713978|gb|EKQ71465.1| ribosomal protein S4 [Helicobacter pylori GAM100Ai]
gi|425628146|gb|AFX91614.1| 30S ribosomal protein S4 [Helicobacter pylori Aklavik117]
gi|425628689|gb|AFX89229.1| 30S ribosomal protein S4 [Helicobacter pylori Aklavik86]
gi|443620566|gb|ELT81010.1| 30S ribosomal protein S4 [Helicobacter pylori A45]
Length = 208
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|82701926|ref|YP_411492.1| 50S ribosomal protein L17 [Nitrosospira multiformis ATCC 25196]
gi|119365884|sp|Q2YAX1.1|RL17_NITMU RecName: Full=50S ribosomal protein L17
gi|82409991|gb|ABB74100.1| LSU ribosomal protein L17P [Nitrosospira multiformis ATCC 25196]
Length = 131
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHR MLRNMT SLLR+E+IKTTLPKAKELRRV+EP++TL KK +L
Sbjct: 1 MRHHNGLRKLNRTSSHRSAMLRNMTNSLLRHEVIKTTLPKAKELRRVIEPMITLGKKPSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF LRDR + KLFSELGPRY NGGY+RILK GFR GDNAPMA +EL+++
Sbjct: 61 ANRRLAFDRLRDRDMVGKLFSELGPRYQTRNGGYLRILKFGFRKGDNAPMALVELMDR 118
>gi|387782854|ref|YP_005793567.1| 30S ribosomal protein S4 [Helicobacter pylori 51]
gi|420407453|ref|ZP_14906618.1| ribosomal protein S4 [Helicobacter pylori CPY6311]
gi|261838613|gb|ACX98379.1| ribosomal protein S4 [Helicobacter pylori 51]
gi|393021461|gb|EJB22592.1| ribosomal protein S4 [Helicobacter pylori CPY6311]
Length = 208
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKNNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|86149496|ref|ZP_01067727.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88596172|ref|ZP_01099409.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 84-25]
gi|218563183|ref|YP_002344963.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC
11168 = ATCC 700819]
gi|317511044|ref|ZP_07968407.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 305]
gi|384448808|ref|YP_005656859.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
IA3902]
gi|403056305|ref|YP_006633710.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407942929|ref|YP_006858576.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni PT14]
gi|415731416|ref|ZP_11473490.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|419636914|ref|ZP_14169099.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9879]
gi|419650976|ref|ZP_14182172.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419661635|ref|ZP_14191956.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-831]
gi|419675887|ref|ZP_14205144.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
110-21]
gi|419677230|ref|ZP_14206385.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 87330]
gi|26399526|sp|Q9PM81.1|RS4_CAMJE RecName: Full=30S ribosomal protein S4
gi|85840278|gb|EAQ57536.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88191013|gb|EAQ94985.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360890|emb|CAL35691.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC
11168 = ATCC 700819]
gi|284926789|gb|ADC29141.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927660|gb|EFV06991.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315929465|gb|EFV08662.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 305]
gi|380616402|gb|EIB35607.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni LMG
9879]
gi|380627658|gb|EIB46028.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380639662|gb|EIB57144.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380651127|gb|EIB67702.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni
110-21]
gi|380654739|gb|EIB71084.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 87330]
gi|401781957|emb|CCK67668.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407906767|gb|AFU43596.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni PT14]
Length = 208
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DN+VYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNIVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I + EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>gi|404379471|ref|ZP_10984528.1| DNA-directed RNA polymerase subunit alpha [Simonsiella muelleri
ATCC 29453]
gi|294482960|gb|EFG30648.1| DNA-directed RNA polymerase subunit alpha [Simonsiella muelleri
ATCC 29453]
Length = 327
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 106/134 (79%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVDTLSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVSIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
LHEYS+L+GVQED++DI+LN+KG++ KL+NR ++LKK G VV A DIEL D+E
Sbjct: 63 NVLHEYSTLDGVQEDVVDILLNIKGIVFKLHNRTEVTVSLKKSGAGVVRAGDIELSHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP+H++ HL++N
Sbjct: 123 IINPDHVLCHLAEN 136
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E + +DP+LLRPVDDLELTVRSANCL
Sbjct: 210 DPEEAVRAAARILIDQMSIFADLQGTPVEVE-EEKAPPIDPVLLRPVDDLELTVRSANCL 268
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 269 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 309
>gi|385228980|ref|YP_005788913.1| 30S ribosomal protein S4 [Helicobacter pylori Puno120]
gi|344335418|gb|AEN15862.1| 30S ribosomal protein S4 [Helicobacter pylori Puno120]
Length = 208
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQ-RRTKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAIELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|383756215|ref|YP_005435200.1| DNA-directed RNA polymerase subunit alpha RpoA [Rubrivivax
gelatinosus IL144]
gi|381376884|dbj|BAL93701.1| DNA-directed RNA polymerase subunit alpha RpoA [Rubrivivax
gelatinosus IL144]
Length = 328
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 105/127 (82%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+ I V+ LG + AK ++EPFERGYG+TLGNALRRVLLSSM+G APTEV I+G LHE
Sbjct: 5 LLKPKAIHVEPLGGHRAKAVLEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAGVLHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS+++GVQED++ I+LNLKGV+ +L+NRD L L+K G+ V A+DI+ D+E++NP+
Sbjct: 65 YSAIDGVQEDVVHIMLNLKGVVFRLHNRDEVTLVLRKEGEGAVTAADIQTPHDVEIINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 83/101 (82%), Gaps = 2/101 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALEN--TPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
EEAIRQSA++LV+QL VFA LE + + + DPILLRPVD+LELTVRSANCL
Sbjct: 210 EEAIRQSAKILVEQLAVFAQLEGQVSDIFEPQPQRTPNFDPILLRPVDELELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 KAENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASRG 310
>gi|388565197|ref|ZP_10151692.1| 50S ribosomal protein L17 [Hydrogenophaga sp. PBC]
gi|388267550|gb|EIK93045.1| 50S ribosomal protein L17 [Hydrogenophaga sp. PBC]
Length = 131
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 101/120 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH HG RKLNRTS HRL MLRNM SLL +E IKTTLPKAKELRRVVEP++TL+K+ T+
Sbjct: 1 MRHGHGLRKLNRTSEHRLAMLRNMMNSLLTHEAIKTTLPKAKELRRVVEPMITLAKEPTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTK 549
+N+RLAF+ LRDR + +KLF+ELGPR+ GGY RILKMGFRVGDNAPMA +EL+++ +
Sbjct: 61 ANRRLAFNRLRDRDVVVKLFNELGPRFKARPGGYTRILKMGFRVGDNAPMALVELVDRAE 120
>gi|148270449|ref|YP_001244909.1| 30S ribosomal protein S4 [Thermotoga petrophila RKU-1]
gi|170289156|ref|YP_001739394.1| 30S ribosomal protein S4 [Thermotoga sp. RQ2]
gi|281412756|ref|YP_003346835.1| 30S ribosomal protein S4 [Thermotoga naphthophila RKU-10]
gi|172047881|sp|A5IMB0.1|RS4_THEP1 RecName: Full=30S ribosomal protein S4
gi|226695093|sp|B1LBL3.1|RS4_THESQ RecName: Full=30S ribosomal protein S4
gi|147735993|gb|ABQ47333.1| SSU ribosomal protein S4P [Thermotoga petrophila RKU-1]
gi|170176659|gb|ACB09711.1| RNA-binding S4 domain protein [Thermotoga sp. RQ2]
gi|281373859|gb|ADA67421.1| ribosomal protein S4 [Thermotoga naphthophila RKU-10]
Length = 209
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 126/202 (62%), Gaps = 5/202 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREG+ L+LK R D KC D RP GQHG+ ++ + YG Q R
Sbjct: 1 MARYTGPLCKLCRREGMKLYLKGERCYTD-KCAFDRRPYAPGQHGQ-RRAKLTQYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ VKR+YGILE+QF RY + + G T E ++++LE+R DNVVYRMGF+ R +ARQ
Sbjct: 59 AKQTVKRIYGILERQFERYVEKAMQKAGDTRENLIQILEARLDNVVYRMGFAINRRQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K VNI SY +KP D++ +REK++ I ++E ++ + WI VD
Sbjct: 119 LVNHGHFLVNGKKVNIPSYLLKPNDVVELREKSRDLEVIKKAVEANKERSVVPWIEVDYD 178
Query: 178 KMEGVFKSEPNRSEFANDINDL 199
G F P+ E + DL
Sbjct: 179 NYRGTFLRYPSLEEVTDLPVDL 200
>gi|358638960|dbj|BAL26257.1| 50S ribosomal protein L17 [Azoarcus sp. KH32C]
Length = 133
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR+G RKLNRTS+HR M RNM SLLR+E+IKTTLPKAKELRRVVEP++TL KK +L
Sbjct: 1 MRHRNGLRKLNRTSAHRQAMFRNMANSLLRHEVIKTTLPKAKELRRVVEPLITLGKKPSL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
SN+RLAF+ LRDR + +KLF ELGPR+ NGGY+RILK GFR GDNAPMA +EL+++
Sbjct: 61 SNRRLAFNRLRDRDMVVKLFDELGPRFSARNGGYLRILKFGFRDGDNAPMALVELVDR 118
>gi|410694791|ref|YP_003625413.1| DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit) [Thiomonas sp. 3As]
gi|294341216|emb|CAZ89617.1| DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit) [Thiomonas sp. 3As]
Length = 328
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 109/127 (85%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LL+P+ I V++LG N +KV++EPFERGYG+TLGNALRRV+LSS++G APTEV I+G LHE
Sbjct: 5 LLRPKSIQVESLGHNRSKVVLEPFERGYGHTLGNALRRVMLSSLVGYAPTEVSINGVLHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS ++G+QED+I ++LNLKGV+LKL+NRD L+L+K G+ VV A+DI+ D+E++NP+
Sbjct: 65 YSVVDGLQEDVIGVLLNLKGVVLKLHNRDEVTLSLRKEGEGVVTAADIQTPHDVEIINPD 124
Query: 319 HIIAHLS 325
H+IAHLS
Sbjct: 125 HVIAHLS 131
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 86/101 (85%), Gaps = 2/101 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSL--EKVDPILLRPVDDLELTVRSANCL 385
EEAIR SAR+LV+QL+VFA+LE + +++ + DPILLRPVD+LELTVRSANCL
Sbjct: 210 EEAIRSSARILVEQLSVFASLEGAETTEAAEAAAGGQTYDPILLRPVDELELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAENI+ IGDLIQRSE ELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 270 KAENIYYIGDLIQRSETELLKTPNLGRKSLNEIKEVLAARG 310
>gi|187476575|ref|YP_784599.1| 50S ribosomal protein L17 [Bordetella avium 197N]
gi|119361752|sp|Q2L235.1|RL17_BORA1 RecName: Full=50S ribosomal protein L17
gi|115421161|emb|CAJ47645.1| 50S ribosomal protein L17 [Bordetella avium 197N]
Length = 131
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 100/118 (84%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH +G RKLNRTSSHRL M RNM +SL+ +E IKTTLPKAKELRRV+EP++TL K+ TL
Sbjct: 1 MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVIEPLITLGKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+NKRLAF+ LRDR +KLF+E+GPR+ NGGY R+LKMGFR GDNAPMA++EL+++
Sbjct: 61 ANKRLAFARLRDRDAVVKLFAEIGPRFANRNGGYTRVLKMGFRQGDNAPMAYMELVDR 118
>gi|420477997|ref|ZP_14976652.1| ribosomal protein S4 [Helicobacter pylori Hp H-23]
gi|393092676|gb|EJB93297.1| ribosomal protein S4 [Helicobacter pylori Hp H-23]
Length = 208
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQ-RRAKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAIELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|291277243|ref|YP_003517015.1| 30S ribosomal protein S4 [Helicobacter mustelae 12198]
gi|290964437|emb|CBG40287.1| 30S ribosomal protein S4 [Helicobacter mustelae 12198]
Length = 208
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG+ G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYGPGQHGQKRG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F E RL G TGE +++L+E R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKVMYGVSEKQFRAIFTEANRLDGNTGENLVRLIERRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+SH LV+ K VNI S+ +K G I V EK+K +I ++EL+ + W+ VD
Sbjct: 119 LVSHGHILVDGKRVNIPSFFVKQGQKIEVIEKSKNNPQITRAIELTSQTGISPWVDVDKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KRFGIFTRYPEREEVVIPIEERL 201
>gi|310829557|ref|YP_003961914.1| 30S ribosomal protein S4 [Eubacterium limosum KIST612]
gi|308741291|gb|ADO38951.1| ribosomal protein S4 [Eubacterium limosum KIST612]
Length = 209
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 125/203 (61%), Gaps = 4/203 (1%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY + CRREG+ L+LK R +KC + RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYTEASCRQCRREGMKLYLKGERCYSTNKCAFERRPTPPGQHGK-RRTKLSEYGLQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LEKQF YF + KG TG +L++LE+R DNVVYR+G +++R EARQ
Sbjct: 60 EKQKVKRIYGVLEKQFAHYFDLAEKQKGITGSNLLEILETRLDNVVYRLGLATSRKEARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H FLVN K VN+ SY +K GD I V+ K+KK + LE +E+ W++ D
Sbjct: 120 LVQHAHFLVNGKKVNVPSYLVKEGDTIEVKAKSKKSPKFKEILEATENRAVAPWLSADLD 179
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G P R + +I + L
Sbjct: 180 TLSGKVIGRPTREDIDVEIAEHL 202
>gi|319764614|ref|YP_004128551.1| DNA-directed RNA polymerase subunit alpha [Alicycliphilus
denitrificans BC]
gi|330826871|ref|YP_004390174.1| DNA-directed RNA polymerase subunit alpha [Alicycliphilus
denitrificans K601]
gi|317119175|gb|ADV01664.1| DNA-directed RNA polymerase, alpha subunit [Alicycliphilus
denitrificans BC]
gi|329312243|gb|AEB86658.1| DNA-directed RNA polymerase, alpha subunit [Alicycliphilus
denitrificans K601]
Length = 331
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 107/129 (82%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G L
Sbjct: 3 TNLLKPKAINVEQLGHNRAKVELEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVL 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ VV A DI+ D+E+VN
Sbjct: 63 HEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVN 122
Query: 317 PNHIIAHLS 325
P+H+IA LS
Sbjct: 123 PDHVIATLS 131
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/104 (68%), Positives = 84/104 (80%), Gaps = 5/104 (4%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDS-----SLEKVDPILLRPVDDLELTVRSA 382
EEA+R SA++LV+QL VFA L+ + + + S DPILLRPVD+LELTVRSA
Sbjct: 210 EEAVRASAKILVEQLAVFAQLDGGEIFESQATGARAASGATFDPILLRPVDELELTVRSA 269
Query: 383 NCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
NCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 270 NCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 313
>gi|121592838|ref|YP_984734.1| DNA-directed RNA polymerase subunit alpha [Acidovorax sp. JS42]
gi|222109618|ref|YP_002551882.1| DNA-directed RNA polymerase subunit alpha [Acidovorax ebreus TPSY]
gi|158513895|sp|A1W333.1|RPOA_ACISJ RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|254765252|sp|B9MBW2.1|RPOA_ACIET RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|120604918|gb|ABM40658.1| DNA-directed RNA polymerase subunit alpha [Acidovorax sp. JS42]
gi|221729062|gb|ACM31882.1| DNA-directed RNA polymerase, alpha subunit [Acidovorax ebreus TPSY]
Length = 330
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 106/129 (82%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
+LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNA+RRVLLSSM+G A TEV I+G L
Sbjct: 3 TNLLKPKAINVEQLGPNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAGVL 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ VV A DI+ D+E+VN
Sbjct: 63 HEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEIVN 122
Query: 317 PNHIIAHLS 325
P H+IA LS
Sbjct: 123 PEHVIATLS 131
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 84/106 (79%), Gaps = 10/106 (9%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE + P ++ DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGGELAAFDAPASSRGAATF---DPILLRPVDELELTVR 266
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 267 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 312
>gi|317050554|ref|YP_004111670.1| 30S ribosomal protein S4 [Desulfurispirillum indicum S5]
gi|316945638|gb|ADU65114.1| ribosomal protein S4 [Desulfurispirillum indicum S5]
Length = 208
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP ++CRRE L+LK R SKC + R PG HG+ G + SDY Q R
Sbjct: 1 MARYTGPVCRMCRRENQKLYLKGLR-CETSKCAFERRAYAPGSHGQRRG-KPSDYAIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R YG+LE QFRR F + R+KG TG +L LLE RFDNVVYR+G +RS++RQ
Sbjct: 59 EKQKVRRTYGLLETQFRRTFDKAVRMKGVTGSNLLTLLELRFDNVVYRLGLGVSRSQSRQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
LI+H FL+N K NI S +++ GD+IS+REK+ + S+E T W+ DA+
Sbjct: 119 LITHGHFLLNGKKANIPSIQLRAGDVISLREKSANLDVVRGSVEAGPSRTVPQWLEFDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K+ G K P R + + + L
Sbjct: 179 KLTGKVKQLPVREDVTEPVTENL 201
>gi|395225712|ref|ZP_10404228.1| ribosomal protein S4, bacterial/organelle type [Thiovulum sp. ES]
gi|394446112|gb|EJF06957.1| ribosomal protein S4, bacterial/organelle type [Thiovulum sp. ES]
Length = 208
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP K+ RR G+ L LK RR L K L+ RP GQHG+ G + S+YG Q
Sbjct: 1 MARYRGPVEKIERRFGVSLGLKGERR-LAGKSALEKRPYAPGQHGQKRG-KVSEYGLQLN 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E R G TGE ++ LLE R DNVVYRMGF+STR+ ARQ
Sbjct: 59 EKQKAKFMYGLSEKQFRRLFQEANRRDGNTGENLISLLERRLDNVVYRMGFASTRASARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
++H LV+ K V+I S+++K G + V+E +KK ++ +LEL+ + W+ VD
Sbjct: 119 FVTHGHILVDGKKVDIPSFRVKVGQKVEVKEASKKNVQVTRALELTNQTGLVDWVDVDKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P RSE + + + L
Sbjct: 179 KAFGIFTRIPERSEVSIPVEERL 201
>gi|384896567|ref|YP_005770556.1| 30S ribosomal protein S4 [Helicobacter pylori 35A]
gi|315587183|gb|ADU41564.1| 30S ribosomal protein S4 [Helicobacter pylori 35A]
Length = 208
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKNNPQVVRAMELTAQTGIAPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|420409335|ref|ZP_14908486.1| ribosomal protein S4 [Helicobacter pylori NQ4216]
gi|393022090|gb|EJB23219.1| ribosomal protein S4 [Helicobacter pylori NQ4216]
Length = 208
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQ-RRAKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAVELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|420394717|ref|ZP_14893948.1| ribosomal protein S4 [Helicobacter pylori CPY1124]
gi|420400812|ref|ZP_14900011.1| ribosomal protein S4 [Helicobacter pylori CPY3281]
gi|393015481|gb|EJB16646.1| ribosomal protein S4 [Helicobacter pylori CPY1124]
gi|393016420|gb|EJB17579.1| ribosomal protein S4 [Helicobacter pylori CPY3281]
Length = 208
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ +TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-DKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|315925228|ref|ZP_07921442.1| 30S ribosomal protein S4 [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621462|gb|EFV01429.1| 30S ribosomal protein S4 [Pseudoramibacter alactolyticus ATCC
23263]
Length = 209
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRT--SDYGYQFRE 58
MARY + CRREG L+LK R KC RP G R S+YG Q RE
Sbjct: 1 MARYTEAACRQCRREGTKLYLKGERCYAKDKCAFGKRPTPPGGAPKRRAKLSEYGLQLRE 60
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQKVKR+YG+LEKQFR YF + +G TGE +L LLE+R DN VYRMG +R EARQL
Sbjct: 61 KQKVKRIYGVLEKQFRHYFDVAEKQQGITGENLLALLETRLDNAVYRMGMGQSRKEARQL 120
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+ H FLVN VN+ASY++K GD+ISV +K+KK + +E +E+ W+ D +K
Sbjct: 121 VLHGHFLVNGAKVNVASYQLKAGDVISVADKSKKSAKFKEVVESTENRAIVPWLEADLEK 180
Query: 179 MEGVFKSEPNRSEFANDINDLL 200
+ G +P+R + +I + L
Sbjct: 181 LSGKVIGKPSREDIDIEIAEHL 202
>gi|386756298|ref|YP_006229515.1| 30S ribosomal protein S4 [Helicobacter pylori PeCan18]
gi|420434556|ref|ZP_14933558.1| ribosomal protein S4 [Helicobacter pylori Hp H-24]
gi|420491442|ref|ZP_14990022.1| ribosomal protein S4 [Helicobacter pylori Hp P-13]
gi|420508284|ref|ZP_15006790.1| ribosomal protein S4 [Helicobacter pylori Hp H-24b]
gi|420509919|ref|ZP_15008417.1| ribosomal protein S4 [Helicobacter pylori Hp H-24c]
gi|420525228|ref|ZP_15023633.1| ribosomal protein S4 [Helicobacter pylori Hp P-13b]
gi|420533703|ref|ZP_15032061.1| ribosomal protein S4 [Helicobacter pylori Hp M1]
gi|420535266|ref|ZP_15033611.1| ribosomal protein S4 [Helicobacter pylori Hp M2]
gi|420537079|ref|ZP_15035414.1| ribosomal protein S4 [Helicobacter pylori Hp M3]
gi|420538825|ref|ZP_15037148.1| ribosomal protein S4 [Helicobacter pylori Hp M4]
gi|420540463|ref|ZP_15038779.1| ribosomal protein S4 [Helicobacter pylori Hp M5]
gi|420542185|ref|ZP_15040491.1| ribosomal protein S4 [Helicobacter pylori Hp M6]
gi|420543690|ref|ZP_15041980.1| ribosomal protein S4 [Helicobacter pylori Hp M9]
gi|384562556|gb|AFI03022.1| 30S ribosomal protein S4 [Helicobacter pylori PeCan18]
gi|393048076|gb|EJB49044.1| ribosomal protein S4 [Helicobacter pylori Hp H-24]
gi|393105482|gb|EJC06031.1| ribosomal protein S4 [Helicobacter pylori Hp P-13]
gi|393115076|gb|EJC15587.1| ribosomal protein S4 [Helicobacter pylori Hp H-24b]
gi|393118154|gb|EJC18652.1| ribosomal protein S4 [Helicobacter pylori Hp H-24c]
gi|393130034|gb|EJC30464.1| ribosomal protein S4 [Helicobacter pylori Hp P-13b]
gi|393136710|gb|EJC37100.1| ribosomal protein S4 [Helicobacter pylori Hp M1]
gi|393139551|gb|EJC39925.1| ribosomal protein S4 [Helicobacter pylori Hp M2]
gi|393141056|gb|EJC41422.1| ribosomal protein S4 [Helicobacter pylori Hp M3]
gi|393141939|gb|EJC42295.1| ribosomal protein S4 [Helicobacter pylori Hp M4]
gi|393144713|gb|EJC45045.1| ribosomal protein S4 [Helicobacter pylori Hp M5]
gi|393145907|gb|EJC46237.1| ribosomal protein S4 [Helicobacter pylori Hp M6]
gi|393159055|gb|EJC59310.1| ribosomal protein S4 [Helicobacter pylori Hp M9]
Length = 208
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIAPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|359801011|ref|ZP_09303533.1| DNA-directed RNA polymerase subunit alpha [Achromobacter
arsenitoxydans SY8]
gi|359361013|gb|EHK62788.1| DNA-directed RNA polymerase subunit alpha [Achromobacter
arsenitoxydans SY8]
Length = 328
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 106/128 (82%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LKPR I+V+ +G++HAK++MEPFERGYG+TLGNALRR+LLSSM G APTEV ++G +HE
Sbjct: 6 FLKPRSIEVEPVGTHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHE 65
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YS++ GV+ED++DI+LNLKGV+ KL+NRD L L+K G VLASDIEL D+E++NP
Sbjct: 66 YSTIPGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKSGAGTVLASDIELPHDVEIINPG 125
Query: 319 HIIAHLSD 326
H I +L++
Sbjct: 126 HAICNLTE 133
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 88/105 (83%), Gaps = 11/105 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT------PVKKELDSSLEKVDPILLRPVDDLELTVRS 381
EEA+RQSAR+L+DQ++VFAALE PV+ ++DP+LLRPVDDLELTVRS
Sbjct: 211 EEAVRQSARILMDQISVFAALEGAGDSYEAPVR-----GTPQIDPVLLRPVDDLELTVRS 265
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LA+RG
Sbjct: 266 ANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARG 310
>gi|221632952|ref|YP_002522175.1| 30S ribosomal protein S4 [Thermomicrobium roseum DSM 5159]
gi|254764619|sp|B9KZW1.1|RS4_THERP RecName: Full=30S ribosomal protein S4
gi|221156886|gb|ACM06013.1| ribosomal protein S4 [Thermomicrobium roseum DSM 5159]
Length = 217
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 128/200 (64%), Gaps = 10/200 (5%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR-------PGQHGRI--SGSRTSD 51
M RYIGP +LCRREG+ L+LK R KC + R PGQHG + R S+
Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGER-CFGPKCPIVKRHPNKNYPPGQHGPTQRAARRPSE 59
Query: 52 YGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSST 111
+ Q REKQK+KR+YGILE+QFRR+F E R G TG+ +L++LESR DNVVYR+GF+ +
Sbjct: 60 FALQLREKQKLKRVYGILERQFRRHFDEAERRPGLTGDNLLQILESRLDNVVYRLGFADS 119
Query: 112 RSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSW 171
R +ARQL+ H FLVN + +I SY+++PGDII+VR +++++ E +++ +W
Sbjct: 120 RRQARQLVRHGHFLVNGRKTDIPSYQVRPGDIIAVRPESRRREYFKVLEETAKNKAVPAW 179
Query: 172 ITVDAKKMEGVFKSEPNRSE 191
++ D + M G P R E
Sbjct: 180 LSRDLETMSGRVLRLPTRDE 199
>gi|363581388|ref|ZP_09314198.1| 30S ribosomal protein S4 [Flavobacteriaceae bacterium HQM9]
Length = 201
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 123/200 (61%), Gaps = 10/200 (5%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHG--RISGSRTSDYGYQFRE 58
MARY GPK K+ R+ G +F +S + K + PGQHG R G + S+Y Q E
Sbjct: 1 MARYTGPKTKIARKFGQAIF--GDDKSFE---KRNYPPGQHGNNRRRGKK-SEYAIQLME 54
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQK K YGILEKQFR F + R G TGE++L+L ESR DNV YRMG S +RS ARQL
Sbjct: 55 KQKAKYTYGILEKQFRNMFDKATRATGITGEVLLQLCESRLDNVAYRMGLSPSRSGARQL 114
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+SHR VN IVNI SY++KPGD++ VREK+K I NSL S S + WIT ++
Sbjct: 115 VSHRHITVNGDIVNIPSYQVKPGDVVGVREKSKSLEVINNSLSAS--SVVYEWITWNSAT 172
Query: 179 MEGVFKSEPNRSEFANDIND 198
EG F S P R + IN+
Sbjct: 173 KEGTFVSVPQRIQIPETINE 192
>gi|222099994|ref|YP_002534562.1| 30S ribosomal protein S4 [Thermotoga neapolitana DSM 4359]
gi|254764618|sp|B9K8B3.1|RS4_THENN RecName: Full=30S ribosomal protein S4
gi|221572384|gb|ACM23196.1| 30S ribosomal protein S4 [Thermotoga neapolitana DSM 4359]
Length = 209
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 124/202 (61%), Gaps = 5/202 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP +LCRREG+ L+LK R D KC D RP GQHG+ S+ + YG Q R
Sbjct: 1 MARYTGPVCRLCRREGMKLYLKGERCYTD-KCAFDRRPYAPGQHGQ-RRSKLTQYGIQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
KQ VKR+YGILE+QF RY + + G T E +++LLE+R DNVVYRMGF+ R +ARQ
Sbjct: 59 AKQTVKRIYGILERQFERYVEKAMKRAGDTRENLIQLLEARLDNVVYRMGFAINRRQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H FLVN K V+I SY ++P D++ VREK++ I ++E + WI VD
Sbjct: 119 LVNHGHFLVNGKKVDIPSYLLRPNDVVEVREKSRDIEVIKKAIEFNRERNTVPWIEVDFD 178
Query: 178 KMEGVFKSEPNRSEFANDINDL 199
+G F P E + DL
Sbjct: 179 NYKGTFLRYPRLEEVTDLPVDL 200
>gi|119899680|ref|YP_934893.1| DNA-directed RNA polymerase subunit alpha [Azoarcus sp. BH72]
gi|158512916|sp|A1KB01.1|RPOA_AZOSB RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|119672093|emb|CAL96007.1| DNA-directed RNA polymerase [Azoarcus sp. BH72]
Length = 326
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 107/129 (82%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRIIDV+++ A+V MEPFERG+G+TLGNALRR+LLSS+ G APTEV I G L
Sbjct: 4 NALLKPRIIDVQSISPVQARVTMEPFERGFGHTLGNALRRILLSSLPGHAPTEVSIEGVL 63
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYS+L+G++EDI+D++LNLKGV+LKL+NR A+L L K G+ VV A DIE D+E++N
Sbjct: 64 HEYSTLDGMREDIVDLLLNLKGVVLKLHNRSEAMLTLSKSGEGVVTARDIEGGHDVEIIN 123
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 124 PDHVIAHLA 132
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEAIR +ARVL+DQL+VFA LE TPV + +DP+LLRPVDDLELTVRSANCL
Sbjct: 208 DPEEAIRYAARVLMDQLSVFADLEGTPVAV-VPEKTPSIDPVLLRPVDDLELTVRSANCL 266
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 267 KAENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASRG 307
>gi|56477619|ref|YP_159208.1| DNA-directed RNA polymerase subunit alpha [Aromatoleum aromaticum
EbN1]
gi|81598738|sp|Q5P307.1|RPOA_AZOSE RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|56313662|emb|CAI08307.1| DNA-directed RNA polymerase (alpha subunit) [Aromatoleum aromaticum
EbN1]
Length = 326
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 106/129 (82%)
Query: 197 NDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
N LLKPRIIDV+++ A+V MEPFERG+G+TLGNALRR+LLSS+ G APTEV I G L
Sbjct: 4 NSLLKPRIIDVQSVSPVQARVTMEPFERGFGHTLGNALRRILLSSLPGYAPTEVSIEGVL 63
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HEYS+L+GV+EDI+D++LNLKGV+LKL++R A L L K G VV A DIE+ D+E++N
Sbjct: 64 HEYSTLDGVREDIVDLLLNLKGVVLKLHSRSEATLRLAKSGDGVVTARDIEVGHDVEIIN 123
Query: 317 PNHIIAHLS 325
P+H+IAHL+
Sbjct: 124 PDHVIAHLA 132
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 90/102 (88%), Gaps = 3/102 (2%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENT-PVKKELDSSLEKVDPILLRPVDDLELTVRSANC 384
D EEAIR +ARVL+DQL+VFA LE T PV ++ S+ + +DP+LLRPVDDLELTVRSANC
Sbjct: 208 DPEEAIRYAARVLMDQLSVFADLEGTAPVVEQ--SAAQTIDPVLLRPVDDLELTVRSANC 265
Query: 385 LKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
LKAENI+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 LKAENIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASRG 307
>gi|229496321|ref|ZP_04390041.1| ribosomal protein S4 [Porphyromonas endodontalis ATCC 35406]
gi|229316899|gb|EEN82812.1| ribosomal protein S4 [Porphyromonas endodontalis ATCC 35406]
Length = 209
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 122/200 (61%), Gaps = 6/200 (3%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK+K+ RR G +F S K + PGQHG ++S+YG Q EKQ
Sbjct: 9 MARYTGPKSKVARRFGEPIFGPDKVLS-----KKNYPPGQHGEGRRRKSSEYGIQLAEKQ 63
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K YG+LE+QFR F R KG TGE++L+LLE R DN+VYR+G + TR+ ARQ++S
Sbjct: 64 KAKYTYGVLERQFRNLFKAAQRSKGVTGEVLLQLLECRLDNIVYRLGIAPTRAAARQIVS 123
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR V+ +VNI SY +KPG II+VRE+ K IANSL H +SWI D M
Sbjct: 124 HRHITVDGNVVNIPSYSVKPGQIIAVRERDKSMEVIANSLAGFNHGK-YSWIEWDNSSMS 182
Query: 181 GVFKSEPNRSEFANDINDLL 200
G F + P R++ +I + L
Sbjct: 183 GKFLNIPQRADIPENIKEQL 202
>gi|349611071|ref|ZP_08890385.1| DNA-directed RNA polymerase subunit alpha [Neisseria sp. GT4A_CT1]
gi|348614959|gb|EGY64494.1| DNA-directed RNA polymerase subunit alpha [Neisseria sp. GT4A_CT1]
Length = 328
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 104/134 (77%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV TL + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV IS
Sbjct: 3 NSTTEFLKPRQIDVDTLSTTRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIS 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++GVQED++DI+LN+KG++ KL+ R L L+K G V+A DIEL D+E
Sbjct: 63 GVLHEYSTVDGVQEDVVDILLNVKGIVFKLHGRGQVQLTLRKSGVGTVVAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP HII HL++N
Sbjct: 123 ILNPEHIICHLAEN 136
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DPILLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPILLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|421539362|ref|ZP_15985524.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
93004]
gi|421549726|ref|ZP_15995736.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
69166]
gi|433470553|ref|ZP_20427953.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
68094]
gi|433476744|ref|ZP_20434072.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
70012]
gi|433525212|ref|ZP_20481858.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
69096]
gi|433537928|ref|ZP_20494415.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
70030]
gi|402321942|gb|EJU57413.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
93004]
gi|402331677|gb|EJU67009.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
69166]
gi|432211986|gb|ELK67930.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
68094]
gi|432217897|gb|ELK73762.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
70012]
gi|432263360|gb|ELL18580.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
69096]
gi|432276068|gb|ELL31130.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
70030]
Length = 328
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 104/134 (77%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV T + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++G+QED++DI+LN+KG++ KL+ R L LKK G VV A DIEL D+E
Sbjct: 63 GVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVLKKSGSGVVSAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP+H+I HL+DN
Sbjct: 123 ILNPSHVICHLADN 136
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DP+LLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPVLLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|91774661|ref|YP_544417.1| 50S ribosomal protein L17P [Methylobacillus flagellatus KT]
gi|119365881|sp|Q1H4L1.1|RL17_METFK RecName: Full=50S ribosomal protein L17
gi|91708648|gb|ABE48576.1| LSU ribosomal protein L17P [Methylobacillus flagellatus KT]
Length = 131
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 99/118 (83%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR+ RKLNRTSSHR MLRNM SLLR+EIIKTTLPKAKELRRV EP++TL K TL
Sbjct: 1 MRHRNSNRKLNRTSSHRQAMLRNMANSLLRHEIIKTTLPKAKELRRVAEPLITLGKDATL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAFS LRDR I KLF+ELGPRY NGGY+RILK GFRVGDNAPMA +EL+++
Sbjct: 61 ANRRLAFSRLRDRDIVGKLFNELGPRYQTRNGGYLRILKCGFRVGDNAPMALVELVDR 118
>gi|325267151|ref|ZP_08133819.1| DNA-directed RNA polymerase subunit alpha [Kingella denitrificans
ATCC 33394]
gi|324981389|gb|EGC17033.1| DNA-directed RNA polymerase subunit alpha [Kingella denitrificans
ATCC 33394]
Length = 327
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 106/135 (78%), Gaps = 1/135 (0%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N ++ LKPR IDV TL + AKV M+PFERG+G+TLGNALRR+LLSSM G APTE+ I+
Sbjct: 3 NSTSEFLKPRQIDVDTLSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEITIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLY-NRDYAILNLKKFGKCVVLASDIELLSDI 312
G LHEYS+L+GVQED++DI+LN+K V+ KL+ NR A+L+LKK G V ASD EL D+
Sbjct: 63 GVLHEYSTLDGVQEDVVDILLNVKSVVFKLHGNRTEAVLSLKKTGAGPVYASDFELPHDV 122
Query: 313 ELVNPNHIIAHLSDN 327
E++NP +I HLSDN
Sbjct: 123 EIINPKQVICHLSDN 137
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA LE TP + E + +DP+LLRPVDDLELTVRSANCL
Sbjct: 210 DPEEAVRMAARILIDQMSIFADLEGTPAEVE-EEKAPPIDPVLLRPVDDLELTVRSANCL 268
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 269 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 309
>gi|269837093|ref|YP_003319321.1| 30S ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745]
gi|269786356|gb|ACZ38499.1| ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745]
Length = 214
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 121/188 (64%), Gaps = 8/188 (4%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKL-------DLRPGQHGRISGSRTSDYG 53
MARY GP ++CRREG+ LFLK R KC + + PGQHG+ R S+YG
Sbjct: 1 MARYTGPVCRICRREGMKLFLKGER-CFGPKCPIVQRQPAKNFPPGQHGQKRTRRPSEYG 59
Query: 54 YQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRS 113
Q REKQK++RMYGI+E+QFRR+F E R G TGE +L++LE R DNVVYR+GF+ +R+
Sbjct: 60 LQLREKQKIRRMYGIMERQFRRHFEEAERRGGVTGENLLQILEMRLDNVVYRLGFADSRN 119
Query: 114 EARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWIT 173
+ARQL+ H F VN + NI S+ +KPGD+++VR +++++ E + WI+
Sbjct: 120 QARQLVRHGHFTVNGRKTNIPSFIVKPGDVVAVRPQSREREYFKIVAETAGSKQVPEWIS 179
Query: 174 VDAKKMEG 181
D + + G
Sbjct: 180 RDMESLSG 187
>gi|385216487|ref|YP_005776444.1| 30S ribosomal protein S4 [Helicobacter pylori F32]
gi|317181016|dbj|BAJ58802.1| 30S ribosomal protein S4 [Helicobacter pylori F32]
Length = 208
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K LD R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGVSEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K +++ SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDVPSYFVRSGQKIEIKEKTKNNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|124268600|ref|YP_001022604.1| 50S ribosomal protein L17P [Methylibium petroleiphilum PM1]
gi|166216183|sp|A2SLD0.1|RL17_METPP RecName: Full=50S ribosomal protein L17
gi|124261375|gb|ABM96369.1| LSU ribosomal protein L17P [Methylibium petroleiphilum PM1]
Length = 131
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 99/118 (83%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHRHG RKLNRTS HRL MLRNM SL++ E IKTT+PKAKELRRVVEP++TL+K+ TL
Sbjct: 1 MRHRHGLRKLNRTSEHRLAMLRNMANSLIQSEAIKTTVPKAKELRRVVEPLITLAKEPTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF RDR + KLF++LGPRY GGY RILKMGFRVGDNAPMAF+EL+++
Sbjct: 61 ANRRLAFDRTRDRDVVAKLFNDLGPRYKARPGGYTRILKMGFRVGDNAPMAFVELVDR 118
>gi|433520954|ref|ZP_20477656.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
61103]
gi|432262738|gb|ELL17973.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
61103]
Length = 328
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 103/134 (76%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV T + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++G+QED++DI+LN+KG++ KL+ R L LKK G VV A DIEL D+E
Sbjct: 63 GVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVLKKSGSGVVSAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HL+DN
Sbjct: 123 ILNPGHVICHLADN 136
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DP+LLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPVLLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIK++LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKKVLASKG 310
>gi|15676095|ref|NP_273226.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
MC58]
gi|121634042|ref|YP_974287.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
FAM18]
gi|161871037|ref|YP_001600069.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
053442]
gi|218767142|ref|YP_002341654.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
Z2491]
gi|254805788|ref|YP_003084009.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
alpha14]
gi|304388968|ref|ZP_07371015.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
ATCC 13091]
gi|385323317|ref|YP_005877756.1| DNA-directed RNA polymerase alpha chain (RNAP alpha subunit;
transcriptase alpha chain; RNA polymerase alpha subunit)
[Neisseria meningitidis 8013]
gi|385327532|ref|YP_005881835.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
alpha710]
gi|385338934|ref|YP_005892807.1| DNA-directed RNA polymerase alpha chain (RNAP alpha subunit;
transcriptase alpha chain; RNA polymerase alpha subunit)
[Neisseria meningitidis WUE 2594]
gi|385339211|ref|YP_005893083.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
G2136]
gi|385342791|ref|YP_005896662.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
M01-240149]
gi|385850438|ref|YP_005896953.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
M04-240196]
gi|385852377|ref|YP_005898891.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
H44/76]
gi|385854347|ref|YP_005900860.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
M01-240355]
gi|385856316|ref|YP_005902828.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
NZ-05/33]
gi|416159259|ref|ZP_11605724.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
N1568]
gi|416167763|ref|ZP_11607730.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
OX99.30304]
gi|416176348|ref|ZP_11609598.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M6190]
gi|416181271|ref|ZP_11611567.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M13399]
gi|416186114|ref|ZP_11613563.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M0579]
gi|416190000|ref|ZP_11615480.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
ES14902]
gi|416194749|ref|ZP_11617466.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
CU385]
gi|416199867|ref|ZP_11619507.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
961-5945]
gi|416211568|ref|ZP_11621437.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M01-240013]
gi|418287352|ref|ZP_12899961.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM233]
gi|418289620|ref|ZP_12901885.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM220]
gi|421537206|ref|ZP_15983394.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
93003]
gi|421541509|ref|ZP_15987626.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM255]
gi|421543568|ref|ZP_15989659.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM140]
gi|421545628|ref|ZP_15991688.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM183]
gi|421547697|ref|ZP_15993729.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM2781]
gi|421551908|ref|ZP_15997889.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM576]
gi|421553916|ref|ZP_15999867.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
98008]
gi|421556154|ref|ZP_16002071.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
80179]
gi|421558187|ref|ZP_16004071.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
92045]
gi|421560318|ref|ZP_16006177.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM2657]
gi|421562391|ref|ZP_16008218.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM2795]
gi|421564497|ref|ZP_16010296.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3081]
gi|421566637|ref|ZP_16012380.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3001]
gi|421907627|ref|ZP_16337502.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
alpha704]
gi|427826447|ref|ZP_18993498.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
H44/76]
gi|433464160|ref|ZP_20421654.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM422]
gi|433466280|ref|ZP_20423743.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
87255]
gi|433468401|ref|ZP_20425838.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
98080]
gi|433472547|ref|ZP_20429917.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
97021]
gi|433474640|ref|ZP_20431988.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
88050]
gi|433479020|ref|ZP_20436319.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
63041]
gi|433480973|ref|ZP_20438245.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2006087]
gi|433483095|ref|ZP_20440333.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2002038]
gi|433485195|ref|ZP_20442401.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
97014]
gi|433487365|ref|ZP_20444544.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M13255]
gi|433489539|ref|ZP_20446678.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM418]
gi|433491636|ref|ZP_20448739.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM586]
gi|433493759|ref|ZP_20450835.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM762]
gi|433495874|ref|ZP_20452923.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M7089]
gi|433497874|ref|ZP_20454891.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M7124]
gi|433499948|ref|ZP_20456940.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM174]
gi|433501932|ref|ZP_20458905.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM126]
gi|433506220|ref|ZP_20463139.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
9757]
gi|433510437|ref|ZP_20467280.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
4119]
gi|433514632|ref|ZP_20471408.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2004090]
gi|433516751|ref|ZP_20473505.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
96023]
gi|433518944|ref|ZP_20475671.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
65014]
gi|433523033|ref|ZP_20479706.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
97020]
gi|433527328|ref|ZP_20483941.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3652]
gi|433529419|ref|ZP_20486019.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3642]
gi|433531541|ref|ZP_20488110.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2007056]
gi|433533726|ref|ZP_20490275.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2001212]
gi|433535768|ref|ZP_20492288.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
77221]
gi|433540099|ref|ZP_20496556.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
63006]
gi|54039275|sp|P66704.1|RPOA_NEIMB RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|54042186|sp|P66703.1|RPOA_NEIMA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|158513130|sp|A1KRJ9.1|RPOA_NEIMF RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|7225386|gb|AAF40625.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
MC58]
gi|120865748|emb|CAM09477.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
FAM18]
gi|121051150|emb|CAM07421.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
Z2491]
gi|161596590|gb|ABX74250.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
053442]
gi|254669330|emb|CBA08369.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
alpha14]
gi|254670763|emb|CBA07039.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
alpha153]
gi|254672693|emb|CBA06591.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
alpha275]
gi|261391704|emb|CAX49153.1| DNA-directed RNA polymerase alpha chain (RNAP alpha subunit;
transcriptase alpha chain; RNA polymerase alpha subunit)
[Neisseria meningitidis 8013]
gi|304337102|gb|EFM03289.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
ATCC 13091]
gi|308388384|gb|ADO30704.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
alpha710]
gi|316985690|gb|EFV64636.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
H44/76]
gi|319411348|emb|CBY91759.1| DNA-directed RNA polymerase alpha chain (RNAP alpha subunit;
transcriptase alpha chain; RNA polymerase alpha subunit)
[Neisseria meningitidis WUE 2594]
gi|325129087|gb|EGC51936.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
N1568]
gi|325131058|gb|EGC53782.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
OX99.30304]
gi|325133080|gb|EGC55752.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M6190]
gi|325135174|gb|EGC57800.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M13399]
gi|325137226|gb|EGC59821.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M0579]
gi|325139058|gb|EGC61604.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
ES14902]
gi|325141181|gb|EGC63681.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
CU385]
gi|325143258|gb|EGC65597.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
961-5945]
gi|325145365|gb|EGC67642.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M01-240013]
gi|325197455|gb|ADY92911.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
G2136]
gi|325199381|gb|ADY94836.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
H44/76]
gi|325202997|gb|ADY98451.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M01-240149]
gi|325203288|gb|ADY98741.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M01-240355]
gi|325205261|gb|ADZ00714.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M04-240196]
gi|325207205|gb|ADZ02657.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NZ-05/33]
gi|372203233|gb|EHP16941.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM220]
gi|372203830|gb|EHP17431.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM233]
gi|389604784|emb|CCA43710.1| DNA-directed RNA polymerase subunit alpha [Neisseria meningitidis
alpha522]
gi|393291296|emb|CCI73499.1| DNA-directed RNA polymerase alpha chain [Neisseria meningitidis
alpha704]
gi|402319683|gb|EJU55188.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
93003]
gi|402319878|gb|EJU55382.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM255]
gi|402325856|gb|EJU61263.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM183]
gi|402326410|gb|EJU61812.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM140]
gi|402327717|gb|EJU63104.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM2781]
gi|402332824|gb|EJU68142.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM576]
gi|402333952|gb|EJU69247.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
98008]
gi|402338007|gb|EJU73246.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
80179]
gi|402338581|gb|EJU73812.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
92045]
gi|402340491|gb|EJU75691.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM2657]
gi|402343047|gb|EJU78202.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM2795]
gi|402345061|gb|EJU80188.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3001]
gi|402346094|gb|EJU81198.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3081]
gi|432205068|gb|ELK61099.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
87255]
gi|432205970|gb|ELK61985.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM422]
gi|432206487|gb|ELK62494.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
98080]
gi|432212431|gb|ELK68369.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
97021]
gi|432212700|gb|ELK68635.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
88050]
gi|432218994|gb|ELK74846.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
63041]
gi|432219326|gb|ELK75173.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2006087]
gi|432223541|gb|ELK79321.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2002038]
gi|432224655|gb|ELK80418.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
97014]
gi|432226130|gb|ELK81863.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M13255]
gi|432230535|gb|ELK86210.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM418]
gi|432231321|gb|ELK86988.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM586]
gi|432231937|gb|ELK87592.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM762]
gi|432237057|gb|ELK92657.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M7124]
gi|432237516|gb|ELK93109.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
M7089]
gi|432237858|gb|ELK93447.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM174]
gi|432243687|gb|ELK99193.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM126]
gi|432244236|gb|ELK99731.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
9757]
gi|432250505|gb|ELL05898.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
4119]
gi|432256296|gb|ELL11619.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2004090]
gi|432256543|gb|ELL11865.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
96023]
gi|432256909|gb|ELL12220.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
65014]
gi|432262906|gb|ELL18137.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
97020]
gi|432267397|gb|ELL22575.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3652]
gi|432269561|gb|ELL24718.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2007056]
gi|432270070|gb|ELL25217.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
NM3642]
gi|432274279|gb|ELL29372.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
2001212]
gi|432276779|gb|ELL31834.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
77221]
gi|432278080|gb|ELL33124.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
63006]
Length = 328
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 103/134 (76%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV T + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++G+QED++DI+LN+KG++ KL+ R L LKK G VV A DIEL D+E
Sbjct: 63 GVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVLKKSGSGVVSAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HL+DN
Sbjct: 123 ILNPGHVICHLADN 136
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DP+LLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPVLLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|433504156|ref|ZP_20461101.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
9506]
gi|432243539|gb|ELK99050.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
9506]
Length = 328
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 103/134 (76%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV T + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++G+QED++DI+LN+KG++ KL+ R L LKK G VV A DIEL D+E
Sbjct: 63 GVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVLKKSGSGVVSAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HL+DN
Sbjct: 123 ILNPGHVICHLADN 136
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DP+LLRPVDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPVLLRPVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|91786411|ref|YP_547363.1| DNA-directed RNA polymerase subunit alpha [Polaromonas sp. JS666]
gi|119366707|sp|Q12G77.1|RPOA_POLSJ RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|91695636|gb|ABE42465.1| DNA-directed RNA polymerase subunit alpha [Polaromonas sp. JS666]
Length = 329
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 107/128 (83%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG+N AKV +EPFERGYG+TLGNALRRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKTINVEQLGANRAKVTLEPFERGYGHTLGNALRRVLLSSMVGHAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
EYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ V A+DI+ D+E++NP
Sbjct: 64 EYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVTAADIQTPHDVEIINP 123
Query: 318 NHIIAHLS 325
H+I +LS
Sbjct: 124 EHVIVNLS 131
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 11/106 (10%)
Query: 328 EEAIRQSARVLVDQLNVFAALE-------NTPVKKELDSSLEKVDPILLRPVDDLELTVR 380
E+A+R SA++LV+QL VFA LE + PV++ S ++ DPILLRPVD+LELTVR
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGNELAAFDAPVQR----SSQQFDPILLRPVDELELTVR 265
Query: 381 SANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
SANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 SANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 311
>gi|344996398|ref|YP_004798741.1| 30S ribosomal protein S4 [Caldicellulosiruptor lactoaceticus 6A]
gi|343964617|gb|AEM73764.1| ribosomal protein S4 [Caldicellulosiruptor lactoaceticus 6A]
Length = 208
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 124/203 (61%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
M++YIGP +LCRREG+ LFLK R KC RP GQHG+ + S+YG Q R
Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDR-CYTEKCAFARRPYPPGQHGQ-ERKKLSEYGMQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKVKR+YG+LE QFRRYF ++KG GE +L LLE R DNVVYR+GF+S+R EAR
Sbjct: 59 EKQKVKRIYGVLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H F VN + VNI SY +K GD I V E++K +TR E W+ DA+
Sbjct: 119 LVTHAHFKVNGRTVNIPSYLVKVGDEIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
+ G + P R + I + L
Sbjct: 179 NLVGRVIALPTREDIDMPIREHL 201
>gi|420431032|ref|ZP_14930057.1| ribosomal protein S4 [Helicobacter pylori Hp A-20]
gi|393045358|gb|EJB46343.1| ribosomal protein S4 [Helicobacter pylori Hp A-20]
Length = 208
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY G +L RR G+ L LK RR L K +D R PGQHG+ ++TSDYG Q +
Sbjct: 1 MARYRGAVERLERRFGVSLALKGERR-LSGKSAIDKRAYGPGQHGQ-RRAKTSDYGLQLK 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYGI EKQFR F+E RL G TGE +++L+E R DNVVYRMGF++TRS ARQ
Sbjct: 59 EKQKAKMMYGISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LV+ K ++I SY ++ G I ++EK K ++ ++EL+ + WI V+
Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E I + L
Sbjct: 179 KKYGIFTRYPEREEVVVPIEERL 201
>gi|258543843|ref|ZP_05704077.1| 30S ribosomal protein S4 [Cardiobacterium hominis ATCC 15826]
gi|258520932|gb|EEV89791.1| 30S ribosomal protein S4 [Cardiobacterium hominis ATCC 15826]
Length = 159
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 111/151 (73%)
Query: 50 SDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFS 109
SDYG Q REKQK+KR+YG+LE+QFR Y+ + ++ KG TGE +L+ LE R DNVVYRMG+
Sbjct: 2 SDYGNQLREKQKLKRIYGVLERQFRNYYKKASQKKGSTGENLLQFLEQRLDNVVYRMGYG 61
Query: 110 STRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPF 169
+TR+EARQL+SH A VN K V IASY+++ D+++VREK++KQ RI +SLE++
Sbjct: 62 ATRAEARQLVSHGAIEVNGKRVTIASYQVRAEDVVAVREKSRKQVRIQSSLEVAAQRGFV 121
Query: 170 SWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
W+ VD KM G+FK P R + + DIN+ L
Sbjct: 122 DWVEVDTAKMSGLFKRVPERIDLSADINESL 152
>gi|332298889|ref|YP_004440811.1| 30S ribosomal protein S4 [Treponema brennaborense DSM 12168]
gi|332181992|gb|AEE17680.1| ribosomal protein S4 [Treponema brennaborense DSM 12168]
Length = 211
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 135/210 (64%), Gaps = 5/210 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRT---SDYGYQFR 57
MARY GP +LCR E L LK R D KC ++ + G G+ +RT S+YG Q R
Sbjct: 1 MARYTGPVCRLCRTEQKKLCLKGDRCKSD-KCPINKKRGAPGKDPKARTGKKSEYGVQLR 59
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK+KR+YG+LEKQF F R+ G TG+ ++ LLESR DNVV+RM F+S+R++ARQ
Sbjct: 60 EKQKMKRIYGMLEKQFHLTFEHAQRMPGVTGDNLICLLESRLDNVVFRMHFASSRTQARQ 119
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L+ H LVN K VNI SY+++PGD++ V+E +KK T I ++L+ S WI +D
Sbjct: 120 LVLHGHILVNGKSVNIPSYEVRPGDVVEVKENSKKLTVILDALKEVSKSGVMPWINLDVD 179
Query: 178 KMEGVFKSEPNRSEFANDINDLLKPRIIDV 207
+GV+ ++P R E D+ D+ + ++++
Sbjct: 180 AQKGVYTAKPRRVEVI-DLADIKEQLVVEL 208
>gi|342903399|ref|ZP_08725210.1| DNA-directed RNA polymerase subunit alpha [Haemophilus haemolyticus
M21621]
gi|373467820|ref|ZP_09559109.1| DNA-directed RNA polymerase, alpha subunit [Haemophilus sp. oral
taxon 851 str. F0397]
gi|417838896|ref|ZP_12485116.1| DNA-directed RNA polymerase subunit alpha [Haemophilus haemolyticus
M19107]
gi|341955503|gb|EGT81959.1| DNA-directed RNA polymerase subunit alpha [Haemophilus haemolyticus
M21621]
gi|341956050|gb|EGT82490.1| DNA-directed RNA polymerase subunit alpha [Haemophilus haemolyticus
M19107]
gi|371757478|gb|EHO46267.1| DNA-directed RNA polymerase, alpha subunit [Haemophilus sp. oral
taxon 851 str. F0397]
Length = 329
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 108/142 (76%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+ + LKPR++D++ + S HAKVI+EP ERG+G+TLGNALRR+LLSSM GCA TEV I G
Sbjct: 5 VTEFLKPRLVDIEQISSTHAKVILEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
LHEYSS EGVQEDI++++LNLKG+ +K+ N+D IL L K G V+A+DI D+E+V
Sbjct: 65 LHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDVILTLNKSGIGPVVAADITHDGDVEIV 124
Query: 316 NPNHIIAHLSDNEEAIRQSARV 337
NPNH+I HL+D +I RV
Sbjct: 125 NPNHVICHLTDENASISMRIRV 146
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCLKA 387
EEAIR++A +L +QL+ F L + + E+ + DPILLRPVDDLELTVRSANCLKA
Sbjct: 214 EEAIRRAATILAEQLDAFVDLRDV-RQPEIKEEKPEFDPILLRPVDDLELTVRSANCLKA 272
Query: 388 ENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
E IH IGDL+QR+E ELL+TPNLG+KSL EIK++LASRG
Sbjct: 273 ETIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311
>gi|332530054|ref|ZP_08406004.1| DNA-directed RNA polymerase subunit alpha [Hylemonella gracilis
ATCC 19624]
gi|332040527|gb|EGI76903.1| DNA-directed RNA polymerase subunit alpha [Hylemonella gracilis
ATCC 19624]
Length = 328
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 104/127 (81%)
Query: 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHE 258
LLKP+ I+V+ LG N AKV +EPFERGYG+TLGNALRRVLLSSM G A TEV I+G LHE
Sbjct: 5 LLKPKTINVEQLGPNRAKVALEPFERGYGHTLGNALRRVLLSSMPGYAATEVTIAGVLHE 64
Query: 259 YSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPN 318
YSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ VV A DI+ D+E++NP
Sbjct: 65 YSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTAGDIQTPHDVEIINPE 124
Query: 319 HIIAHLS 325
H+IA LS
Sbjct: 125 HVIATLS 131
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 87/105 (82%), Gaps = 10/105 (9%)
Query: 328 EEAIRQSARVLVDQLNVFAALE------NTPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
E+A+R SA++LV+QL VFA L+ +TP ++ S + DPILLRPVD+LELTVRS
Sbjct: 210 EDAVRASAKILVEQLAVFAQLDGSEKIFDTPSQR----SAGQFDPILLRPVDELELTVRS 265
Query: 382 ANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
ANCLKAENI+ IGDLIQRSENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 ANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEIKEVLASRG 310
>gi|433512524|ref|ZP_20469326.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
63049]
gi|432250279|gb|ELL05674.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
63049]
Length = 328
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 103/134 (76%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV T + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++G+QED++DI+LN+KG++ KL+ R L LKK G VV A DIEL D+E
Sbjct: 63 GVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVLKKSGSGVVSAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HL+DN
Sbjct: 123 ILNPGHVICHLADN 136
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DP+LLR VDDLELTVRSANCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPVLLRLVDDLELTVRSANCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|433508305|ref|ZP_20465191.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
12888]
gi|432249956|gb|ELL05354.1| DNA-directed RNA polymerase, alpha subunit [Neisseria meningitidis
12888]
Length = 328
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 103/134 (76%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + LKPR IDV T + AKV M+PFERG+G+TLGNALRR+LLSSM G APTEV I+
Sbjct: 3 NSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIA 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYS+++G+QED++DI+LN+KG++ KL+ R L LKK G VV A DIEL D+E
Sbjct: 63 GVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVLKKSGSGVVSAGDIELPHDVE 122
Query: 314 LVNPNHIIAHLSDN 327
++NP H+I HL+DN
Sbjct: 123 ILNPGHVICHLADN 136
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEA+R +AR+L+DQ+++FA L+ TPV+ E++ +DP+LLRPVDDLELTVRS NCL
Sbjct: 211 DPEEAVRSAARILIDQMSIFADLQGTPVE-EVEEKAPPIDPVLLRPVDDLELTVRSVNCL 269
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDLIQR+E ELL+TPNLGRKSLNEIKE+LAS+G
Sbjct: 270 KAEDIYYIGDLIQRTETELLKTPNLGRKSLNEIKEVLASKG 310
>gi|303256476|ref|ZP_07342490.1| ribosomal protein L17 [Burkholderiales bacterium 1_1_47]
gi|331000671|ref|ZP_08324324.1| ribosomal protein L17 [Parasutterella excrementihominis YIT 11859]
gi|302859967|gb|EFL83044.1| ribosomal protein L17 [Burkholderiales bacterium 1_1_47]
gi|329570883|gb|EGG52594.1| ribosomal protein L17 [Parasutterella excrementihominis YIT 11859]
Length = 133
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 104/121 (85%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH+ G RKLNRTS+HRL MLRNM SLLR+E IKTTLPKAKELRRVVEP++TL+K+ T+
Sbjct: 1 MRHKLGLRKLNRTSAHRLAMLRNMMNSLLRHEAIKTTLPKAKELRRVVEPMITLAKEPTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTK 549
+NKRLAF+ LRDR+I +KLF+E+GP + GGY RILKMG+RVGDNAP+A++EL+ +T
Sbjct: 61 ANKRLAFNRLRDREIVVKLFNEIGPMFKDRKGGYTRILKMGYRVGDNAPLAYVELVQKTT 120
Query: 550 N 550
+
Sbjct: 121 D 121
>gi|296272961|ref|YP_003655592.1| 30S ribosomal protein S4 [Arcobacter nitrofigilis DSM 7299]
gi|296097135|gb|ADG93085.1| ribosomal protein S4 [Arcobacter nitrofigilis DSM 7299]
Length = 208
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP K+ RR DL LK RR L+ K L+ RP GQHG+ ++ S+YG Q R
Sbjct: 1 MARYRGPVEKIERRLDADLGLKGERR-LNGKSALEKRPFAPGQHGQ-RRTKLSEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFR+YF E AR +G TG ++ L+E R DNVVYRMGF++TR+ ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRKYFKEAARREGNTGSNLITLIEQRLDNVVYRMGFATTRANARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
+H LV+ + V+I S+ +KPG I ++EK+K +I +LEL+ + W+ VD
Sbjct: 119 FTTHGHILVDGQKVDIPSFVVKPGQKIEIKEKSKTNPQIVRALELTNQTGMVEWVDVDKD 178
Query: 178 KMEGVFKSEPNRSEFANDINDLL 200
K G+F P R E + + L
Sbjct: 179 KAFGIFTRIPTREEVVIPVEERL 201
>gi|121603260|ref|YP_980589.1| DNA-directed RNA polymerase subunit alpha [Polaromonas
naphthalenivorans CJ2]
gi|158513921|sp|A1VJ40.1|RPOA_POLNA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP
subunit alpha; AltName: Full=RNA polymerase subunit
alpha; AltName: Full=Transcriptase subunit alpha
gi|120592229|gb|ABM35668.1| DNA-directed RNA polymerase subunit alpha [Polaromonas
naphthalenivorans CJ2]
Length = 330
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/128 (62%), Positives = 108/128 (84%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
+LLKP+ I+V+ LG+N AKV +EPFERGYG+TLGNALRRVLLSSM+G A TEV I+G LH
Sbjct: 4 NLLKPKTINVEQLGANRAKVTLEPFERGYGHTLGNALRRVLLSSMVGHAATEVTIAGVLH 63
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
EYSS++GVQED+++I+LNLKGV+ KL+NRD L+L+K G+ + A+DI+ D+E+VNP
Sbjct: 64 EYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPITAADIQTPHDVEIVNP 123
Query: 318 NHIIAHLS 325
+H+I +LS
Sbjct: 124 DHVIMNLS 131
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 86/107 (80%), Gaps = 12/107 (11%)
Query: 328 EEAIRQSARVLVDQLNVFAALE--------NTPVKKELDSSLEKVDPILLRPVDDLELTV 379
E+A+R SA++LV+QL VFA LE N P + S ++ DPILLRPVD+LELTV
Sbjct: 210 EDAVRASAKILVEQLAVFAQLEGNELGAIINDPAPR----SSQQFDPILLRPVDELELTV 265
Query: 380 RSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
RSANCLKAENI+ IGDLIQR+ENELL+TPNLGRKSLNEIKE+LASRG
Sbjct: 266 RSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLASRG 312
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,828,245,592
Number of Sequences: 23463169
Number of extensions: 310020255
Number of successful extensions: 837583
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16865
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 808851
Number of HSP's gapped (non-prelim): 21707
length of query: 550
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 402
effective length of database: 8,886,646,355
effective search space: 3572431834710
effective search space used: 3572431834710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)