BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8861
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6T3H9|RS4_JANMA 30S ribosomal protein S4 OS=Janthinobacterium sp. (strain
Marseille) GN=rpsD PE=3 SV=1
Length = 207
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/200 (73%), Positives = 170/200 (85%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILE+QFRRYF E R KG TGE +LKLLE+R DNVVYRMGF STR+E RQL+S
Sbjct: 61 KVKRMYGILERQFRRYFAEADRRKGNTGETLLKLLEARLDNVVYRMGFGSTRAEGRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNIASY++KPGD+I+VREK+KKQ RI +L L+E S SW++VDAKKME
Sbjct: 121 HKAFTVNGIVVNIASYQVKPGDVIAVREKSKKQVRIVEALSLAEQSGMPSWVSVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K+ P+RSE AND+N+ L
Sbjct: 181 GTYKAAPDRSEIANDVNESL 200
>sp|A4G9R4|RS4_HERAR 30S ribosomal protein S4 OS=Herminiimonas arsenicoxydans GN=rpsD
PE=3 SV=1
Length = 207
Score = 311 bits (797), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 146/200 (73%), Positives = 167/200 (83%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYGILE+QFRRYF E R KG TGE +LKLLE+R DNVVYRMGF STR+E RQL+S
Sbjct: 61 KVKRMYGILERQFRRYFAEADRRKGNTGETLLKLLETRLDNVVYRMGFGSTRAEGRQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+AF VN +VNIASY++KPGDI++VREK+KKQ RI +L L+E SW+ VD+KKME
Sbjct: 121 HKAFTVNGIVVNIASYQVKPGDIVAVREKSKKQVRIVEALSLAEQIGMPSWVAVDSKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+RSE A D+N+ L
Sbjct: 181 GTFKSVPDRSEIAADVNESL 200
>sp|B2UEJ4|RS4_RALPJ 30S ribosomal protein S4 OS=Ralstonia pickettii (strain 12J)
GN=rpsD PE=3 SV=1
Length = 207
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S ++K GD+I++REK+KKQ RIA SL L+E S W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQVKSGDVIAIREKSKKQVRIAESLTLAEQSGFPIWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ A DIN+ L
Sbjct: 181 GTFKQAPDRADIAGDINESL 200
>sp|Q8XV37|RS4_RALSO 30S ribosomal protein S4 OS=Ralstonia solanacearum (strain GMI1000)
GN=rpsD PE=3 SV=1
Length = 207
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 161/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++REK+KKQ RIA SL L+E + W+ VDAKKME
Sbjct: 121 HKAILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQTGFPGWVAVDAKKME 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + A DIN+ L
Sbjct: 181 GTFKQAPDRGDIAGDINESL 200
>sp|Q63Q36|RS4_BURPS 30S ribosomal protein S4 OS=Burkholderia pseudomallei (strain
K96243) GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|A3NEF4|RS4_BURP6 30S ribosomal protein S4 OS=Burkholderia pseudomallei (strain 668)
GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|Q3JMT8|RS4_BURP1 30S ribosomal protein S4 OS=Burkholderia pseudomallei (strain
1710b) GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|A1V878|RS4_BURMS 30S ribosomal protein S4 OS=Burkholderia mallei (strain SAVP1)
GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|Q62GN0|RS4_BURMA 30S ribosomal protein S4 OS=Burkholderia mallei (strain ATCC 23344)
GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|A2S7K1|RS4_BURM9 30S ribosomal protein S4 OS=Burkholderia mallei (strain NCTC 10229)
GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|A3MRX9|RS4_BURM7 30S ribosomal protein S4 OS=Burkholderia mallei (strain NCTC 10247)
GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|A3P088|RS4_BURP0 30S ribosomal protein S4 OS=Burkholderia pseudomallei (strain
1106a) GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (746), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGRISG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRISGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAVTVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|Q1LI62|RS4_RALME 30S ribosomal protein S4 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rpsD PE=3 SV=1
Length = 207
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 163/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GDI+SVRE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILVNGETLNVPSAQIKSGDIVSVREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G +K P+R++ + DIN+ L
Sbjct: 181 GTYKQAPDRADISGDINESL 200
>sp|Q2SU52|RS4_BURTA 30S ribosomal protein S4 OS=Burkholderia thailandensis (strain E264
/ ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsD PE=3
SV=1
Length = 207
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+IS+REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKAITVNGIVANIPSQQVKAGDVISIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQVPERADIAGDINESL 200
>sp|Q13TJ5|RS4_BURXL 30S ribosomal protein S4 OS=Burkholderia xenovorans (strain LB400)
GN=rpsD PE=3 SV=1
Length = 207
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 160/200 (80%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN + NI S ++K GD+++VRE+ KKQ RI +L L+E SW+ VD+KK E
Sbjct: 121 HKAIMVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGLPSWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>sp|B4E5E5|RS4_BURCJ 30S ribosomal protein S4 OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=rpsD PE=3 SV=1
Length = 207
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>sp|A0K3Q0|RS4_BURCH 30S ribosomal protein S4 OS=Burkholderia cenocepacia (strain
HI2424) GN=rpsD PE=3 SV=1
Length = 207
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>sp|B1JU47|RS4_BURCC 30S ribosomal protein S4 OS=Burkholderia cenocepacia (strain MC0-3)
GN=rpsD PE=3 SV=1
Length = 207
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>sp|Q1BRX3|RS4_BURCA 30S ribosomal protein S4 OS=Burkholderia cenocepacia (strain AU
1054) GN=rpsD PE=3 SV=1
Length = 207
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>sp|Q39KE2|RS4_BURS3 30S ribosomal protein S4 OS=Burkholderia sp. (strain 383) GN=rpsD
PE=3 SV=1
Length = 207
Score = 289 bits (739), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKSGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R+E A DIN+ L
Sbjct: 181 GTFKQMPERAEIAGDINESL 200
>sp|B2JI40|RS4_BURP8 30S ribosomal protein S4 OS=Burkholderia phymatum (strain DSM 17167
/ STM815) GN=rpsD PE=3 SV=1
Length = 207
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + NI S ++K GD+I+VRE+AKKQ RI +L L+E W+ VD+KK E
Sbjct: 121 HKAITVNGVVANIPSLQVKAGDVIAVREQAKKQARILEALSLAEQGGLPQWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RS+ A DIN+ L
Sbjct: 181 GTFKSMPERSDIAGDINESL 200
>sp|Q46WG8|RS4_CUPPJ 30S ribosomal protein S4 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rpsD PE=3 SV=1
Length = 207
Score = 288 bits (738), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGEKLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD+I++RE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>sp|B2T726|RS4_BURPP 30S ribosomal protein S4 OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=rpsD PE=3 SV=1
Length = 207
Score = 288 bits (737), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E RLKG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN + NI S ++K GD+++VRE KKQ RI +L L+E SW+ VD+KK E
Sbjct: 121 HKAIVVNGVVSNIPSMQVKAGDVVAVRETKKKQARILEALSLAEQGGMPSWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ A DIN+ L
Sbjct: 181 GTFKQKPERSDIAGDINESL 200
>sp|Q0BJ21|RS4_BURCM 30S ribosomal protein S4 OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=rpsD PE=3 SV=2
Length = 207
Score = 288 bits (736), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GDI+++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDIVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>sp|B1YRQ4|RS4_BURA4 30S ribosomal protein S4 OS=Burkholderia ambifaria (strain MC40-6)
GN=rpsD PE=3 SV=1
Length = 207
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD++++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>sp|A4JAR5|RS4_BURVG 30S ribosomal protein S4 OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=rpsD PE=3 SV=2
Length = 207
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD+I++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGVVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ A DIN+ L
Sbjct: 181 GTFKQMPERADIAGDINESL 200
>sp|B3R7E4|RS4_CUPTR 30S ribosomal protein S4 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rpsD PE=3 SV=1
Length = 207
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKS+RRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSSRRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD+I++RE++KKQ RIA +L L+E S +W+ VDAKK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>sp|Q7NQH6|RS4_CHRVO 30S ribosomal protein S4 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsD PE=3 SV=1
Length = 206
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 160/200 (80%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARR+LDSKCKLD PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRALDSKCKLDAAPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR YF E R KG TGE +LKLLESR DNVVYRMGF STR+EARQL+S
Sbjct: 60 KIRRIYGVLERQFRNYFAEAVRRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI SY++K GD++SVREKAKKQ RI L L+E SW++VD+KKME
Sbjct: 120 HKAIVVNGQVVNIPSYQVKAGDVVSVREKAKKQARIVEGLALAEQGGFPSWVSVDSKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P RSE ++DIN+ L
Sbjct: 180 GTFKSAPERSELSSDINEQL 199
>sp|Q0K644|RS4_CUPNH 30S ribosomal protein S4 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rpsD PE=3 SV=1
Length = 207
Score = 286 bits (733), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 162/200 (81%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN + +N+ S +IK GD++++RE++KKQ RIA +L L+E S +W+ VD+KK E
Sbjct: 121 HKAILVNGQTLNVPSAQIKSGDVVTIREQSKKQVRIAEALSLAEQSGFPTWVAVDSKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R++ + DIN+ L
Sbjct: 181 GTFKQVPDRADISGDINESL 200
>sp|A4SUY5|RS4_POLSQ 30S ribosomal protein S4 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rpsD PE=3 SV=1
Length = 207
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR+L KCKLD +PGQHGR SGSRTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCKLDTKPGQHGRTSGSRTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A L+N VNI S ++KPGD++++REKAKKQ RI SL L +W++VDA K+E
Sbjct: 121 HCAILLNGSPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDAAKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + + +IN+ L
Sbjct: 181 GTFKQVPDREDISGEINESL 200
>sp|P0A4C5|RS4_BORPE 30S ribosomal protein S4 OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=rpsD PE=3 SV=1
Length = 207
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF+E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+IS+REKAKKQ RI SL+L+ W+ VDA KM
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLAASIGLPQWVEVDASKMT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A D+N+ +
Sbjct: 181 GTFKSAPDRADVARDVNESM 200
>sp|P0A4C7|RS4_BORPA 30S ribosomal protein S4 OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=rpsD PE=3 SV=1
Length = 207
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF+E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+IS+REKAKKQ RI SL+L+ W+ VDA KM
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLAASIGLPQWVEVDASKMT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A D+N+ +
Sbjct: 181 GTFKSAPDRADVARDVNESM 200
>sp|P0A4C6|RS4_BORBR 30S ribosomal protein S4 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=rpsD PE=3 SV=1
Length = 207
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF+E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+IS+REKAKKQ RI SL+L+ W+ VDA KM
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLAASIGLPQWVEVDASKMT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A D+N+ +
Sbjct: 181 GTFKSAPDRADVARDVNESM 200
>sp|A9ADL8|RS4_BURM1 30S ribosomal protein S4 OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=rpsD PE=3 SV=1
Length = 207
Score = 285 bits (729), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRSL KCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ VN + N+ S ++K GD+I++REKAKKQ RI +L L+E SW+ VDAKK E
Sbjct: 121 HKSITVNGIVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDAKKFE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P R++ DIN+ L
Sbjct: 181 GTFKQVPERADIGGDINESL 200
>sp|A1VJ39|RS4_POLNA 30S ribosomal protein S4 OS=Polaromonas naphthalenivorans (strain
CJ2) GN=rpsD PE=3 SV=1
Length = 207
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/200 (66%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSKPGQHGRTSGTRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R +G TG +L +LESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRRGNTGANLLSVLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+I+VR+K+KKQTRIA +LEL++ +W+ V+A K E
Sbjct: 121 HKAMTVNGQSVNIPSYMVKAGDVIAVRDKSKKQTRIAEALELAKQVGLPAWVDVNADKGE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKVPDRDEFAADINESL 200
>sp|A1TJU1|RS4_ACIAC 30S ribosomal protein S4 OS=Acidovorax citrulli (strain AAC00-1)
GN=rpsD PE=3 SV=1
Length = 207
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +KPGD+++VREK+KKQ RI +L+L++ +W+ V+A K+E
Sbjct: 121 HKAITVNGQSVNIASYLVKPGDVVAVREKSKKQARIVEALQLAQQVGIPAWVEVNADKVE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKAPDRDEFGADINESL 200
>sp|A9IHR7|RS4_BORPD 30S ribosomal protein S4 OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=rpsD PE=3 SV=1
Length = 207
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA VN +IAS +K GD+I+VREKAKKQ RI +L+L+ W+ VD KM
Sbjct: 121 HRAIEVNGHTADIASLIVKAGDVITVREKAKKQGRIREALDLASSIGIPQWVEVDTNKMA 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A DIN+ +
Sbjct: 181 GTFKSMPDRADVARDINESM 200
>sp|Q2L242|RS4_BORA1 30S ribosomal protein S4 OS=Bordetella avium (strain 197N) GN=rpsD
PE=3 SV=1
Length = 207
Score = 278 bits (711), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DLFLKSARRSLDSKCKLD +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K+KRMYG+LEKQFR+YF E R +G TGE +++LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KLKRMYGVLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HRA +N +IAS +K GD+I+VRE AKKQ RI SL+L+ W+ VD+ KM
Sbjct: 121 HRAIELNGHTADIASMLVKAGDVITVREGAKKQARIRESLDLAASIGIPQWVEVDSNKMT 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P+R++ A D+N+ +
Sbjct: 181 GTFKSPPDRADVARDVNESM 200
>sp|B1XSS6|RS4_POLNS 30S ribosomal protein S4 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rpsD PE=3 SV=1
Length = 207
Score = 278 bits (711), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 156/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR+L KC+LD +PGQ GR SGSRTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCRLDNKPGQDGRTSGSRTSDYGNQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKR+YG+LE+QFRRYF E R KG TGE +L+LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRIYGVLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H A L+N VNI S ++KPGD++++REKAKKQ RI SL L +W++VD K+E
Sbjct: 121 HCAILLNGNPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDVAKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R + + +IN+ L
Sbjct: 181 GTFKQVPDREDISGEINESL 200
>sp|C5CQ76|RS4_VARPS 30S ribosomal protein S4 OS=Variovorax paradoxus (strain S110)
GN=rpsD PE=3 SV=1
Length = 207
Score = 278 bits (711), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIQDKAKFDSKPGQHGRTSGQRTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R +G TG +L +LESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRRGNTGANLLFILESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+I+VR+K+KKQTRIA +L+L++ +W+ V+A K E
Sbjct: 121 HKAITVNGQSVNIPSYLVKTGDVIAVRDKSKKQTRIAEALQLAQQVGIPAWVEVNADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EFA DIN+ L
Sbjct: 181 GTFKKVPDRDEFAADINESL 200
>sp|A2SLD2|RS4_METPP 30S ribosomal protein S4 OS=Methylibium petroleiphilum (strain PM1)
GN=rpsD PE=3 SV=1
Length = 207
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 159/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR++ K K + +PGQHGR SGSRTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRAIGDKSKFETKPGQHGRTSGSRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LE+QFRRYF E R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLERQFRRYFAEAERRKGNTGANLLLLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ VN ++VNIASY +K GD+++VREKAKKQ R+ SL+L+E +W+ VDA K+E
Sbjct: 121 HKGITVNGEVVNIASYLVKTGDVVAVREKAKKQLRVTESLKLAESMGLPAWVQVDATKLE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EF +DIN+ L
Sbjct: 181 GVFKKSPDRDEFGSDINESL 200
>sp|Q21QP8|RS4_RHOFD 30S ribosomal protein S4 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=rpsD PE=3 SV=1
Length = 207
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 158/200 (79%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIGDKAKFDSKPGQHGRTSGARTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN K VNI SY +K GD+I+VR+K+KKQ RI +L+L++ +W+ ++A+K E
Sbjct: 121 HKAMTVNGKSVNIPSYMVKAGDMIAVRDKSKKQNRIVEALQLAQQVGMPAWVEINAEKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P+R +FA D+N+ L
Sbjct: 181 GTFKAVPDRDQFAADVNESL 200
>sp|B9MBW1|RS4_ACIET 30S ribosomal protein S4 OS=Acidovorax ebreus (strain TPSY) GN=rpsD
PE=3 SV=1
Length = 207
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF RLKG TG +L LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +K GD+++VREK+KKQ RI +L+L++ W+ V+A K+E
Sbjct: 121 HKAITVNGQSVNIASYLVKAGDVVAVREKSKKQARIVEALQLAQQVGMPVWVEVNADKVE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKVPDRDEFGADINESL 200
>sp|A1W332|RS4_ACISJ 30S ribosomal protein S4 OS=Acidovorax sp. (strain JS42) GN=rpsD
PE=3 SV=1
Length = 207
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 155/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF RLKG TG +L LLE R DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNIASY +K GD+++VR+K+KKQ RI +L+L++ W+ V+A K+E
Sbjct: 121 HKAITVNGQSVNIASYLVKAGDVVAVRDKSKKQARIVEALQLAQQVGMPVWVEVNADKVE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKVPDRDEFGADINESL 200
>sp|Q12G78|RS4_POLSJ 30S ribosomal protein S4 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rpsD PE=3 SV=1
Length = 207
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARR++ K K D +PGQHGR SG+RTSD+G Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRAISDKAKFDSKPGQHGRTSGTRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF E R KG TG +L +LESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEEADRRKGNTGANLLFILESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN VNI SY +K GD+I+VR+K+KKQTR+ +LEL++ +W+ V+A K E
Sbjct: 121 HKAITVNGNSVNIPSYMVKTGDVIAVRDKSKKQTRVTEALELAKQVGLPAWVDVNADKGE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R EFA D+N+ L
Sbjct: 181 GVFKKVPDRDEFAADVNESL 200
>sp|C1DAU2|RS4_LARHH 30S ribosomal protein S4 OS=Laribacter hongkongensis (strain HLHK9)
GN=rpsD PE=3 SV=1
Length = 206
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GPK KL RREG DLFLKSARRS+DSKCKLD RPGQHG R SDYG REKQ
Sbjct: 1 MARYTGPKCKLARREGTDLFLKSARRSIDSKCKLDSRPGQHG-AKQPRLSDYGIHLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++R+YG+LE+QFR+YF E R KG TGE +L++LESR DNVVYRMG+ STR+E+RQL+S
Sbjct: 60 KIRRIYGVLERQFRKYFAEAERRKGSTGENLLQILESRLDNVVYRMGYGSTRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNI SY++K GD++SVREK+KKQ RIA SL L+E W++VD KKME
Sbjct: 120 HKAIVVNGEVVNIPSYQVKAGDVVSVREKSKKQVRIAESLALAEQIGFPGWVSVDPKKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK+ P RSE ++DIN+ L
Sbjct: 180 GTFKNAPERSELSSDINEQL 199
>sp|Q2S936|RS4_HAHCH 30S ribosomal protein S4 OS=Hahella chejuensis (strain KCTC 2396)
GN=rpsD PE=3 SV=1
Length = 206
Score = 275 bits (703), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPK KL RREG DLFLKS R+LDSKC ++ PGQHG+ G R SDYG Q REKQ
Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCNMETAPGQHGQRRG-RLSDYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+RMYG+LEKQFR Y+ E AR+KG TGE +L+LLE R DNVVYRMGF STRSEARQL+S
Sbjct: 60 KVRRMYGVLEKQFRNYYKEAARIKGATGENLLQLLERRLDNVVYRMGFGSTRSEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K VNI SY++KPGD++S+REK+K Q RI SLEL+ WI VDA KM
Sbjct: 120 HKAILVNGKAVNIPSYQVKPGDVVSIREKSKNQLRIKGSLELAAQRATLEWIEVDAAKMS 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FKS P R++ + DIN+ L
Sbjct: 180 GTFKSVPERTDLSPDINENL 199
>sp|A9BRX4|RS4_DELAS 30S ribosomal protein S4 OS=Delftia acidovorans (strain DSM 14801 /
SPH-1) GN=rpsD PE=3 SV=1
Length = 207
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 151/200 (75%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARYIGPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG RTSD+G Q REKQ
Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKSKFDTKPGQHGRTSGQRTSDFGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF + KG TG +L LLESR DNVVYRMGF STRSEARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+++VREK+KKQ RI +L+L+ +W+ V A K E
Sbjct: 121 HKAITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSADKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P+R EF DIN+ L
Sbjct: 181 GTFKKSPDRDEFGADINESL 200
>sp|C5BF28|RS4_EDWI9 30S ribosomal protein S4 OS=Edwardsiella ictaluri (strain 93-146)
GN=rpsD PE=3 SV=1
Length = 206
Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 158/200 (79%), Gaps = 1/200 (0%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++SVREKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIVVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK +P RS+ + DIN+ L
Sbjct: 180 GVFKRQPERSDLSADINEHL 199
>sp|A1WK93|RS4_VEREI 30S ribosomal protein S4 OS=Verminephrobacter eiseniae (strain
EF01-2) GN=rpsD PE=3 SV=1
Length = 207
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 154/200 (77%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPKAKL RREG DLFLKSARRS+ K K D +PGQHGR SG+RTSDYG Q REKQ
Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSKPGQHGRTSGARTSDYGLQLREKQ 60
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KVKRMYG+LEKQFRRYF KG TG +L LLESR DNVVYRMGF STR+EARQL+S
Sbjct: 61 KVKRMYGVLEKQFRRYFEAAESRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEARQLVS 120
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A VN + VNI SY +K GD+++VREK+KKQ RIA +L+L+ +W+ V+ +K E
Sbjct: 121 HKAITVNGQSVNIPSYLVKTGDLVAVREKSKKQGRIAEALQLATQVGMPAWVEVNTEKAE 180
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+FK P+R EF DIN+ L
Sbjct: 181 GLFKKAPDRDEFGADINESL 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,550,077
Number of Sequences: 539616
Number of extensions: 7736062
Number of successful extensions: 27274
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2698
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 22009
Number of HSP's gapped (non-prelim): 3592
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)