Query psy8861
Match_columns 550
No_of_seqs 495 out of 3220
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:15:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lu0_A DNA-directed RNA polyme 100.0 3.5E-69 1.2E-73 556.4 14.0 243 194-437 3-322 (329)
2 2a6h_A DNA-directed RNA polyme 100.0 6.3E-66 2.2E-70 530.7 17.5 231 199-430 6-314 (315)
3 3r8n_D 30S ribosomal protein S 100.0 7.8E-55 2.7E-59 422.9 11.9 199 2-201 1-199 (205)
4 3bbn_D Ribosomal protein S4; s 100.0 9E-52 3.1E-56 400.8 13.4 193 1-201 1-193 (201)
5 3r8s_N 50S ribosomal protein L 100.0 4.4E-51 1.5E-55 363.5 13.5 119 430-548 1-119 (120)
6 1gd8_A 50S ribosomal protein L 100.0 2.4E-50 8.1E-55 358.5 11.7 117 430-546 1-118 (118)
7 2zjr_K 50S ribosomal protein L 100.0 4.3E-50 1.5E-54 355.5 13.0 116 430-545 1-116 (116)
8 2vqe_D 30S ribosomal protein S 100.0 1E-47 3.4E-52 375.5 17.5 200 1-201 1-203 (209)
9 3bbo_P Ribosomal protein L17; 100.0 9.5E-48 3.2E-52 364.5 11.6 120 426-545 86-205 (205)
10 2cqm_A Ribosomal protein L17 i 100.0 3E-45 1E-49 327.5 8.1 107 443-549 2-110 (122)
11 1bdf_A RNA polymerase alpha su 100.0 7.2E-42 2.5E-46 339.5 18.3 131 195-325 4-134 (235)
12 1c05_A Ribosomal protein S4 de 100.0 6.7E-36 2.3E-40 280.6 15.6 152 48-201 2-153 (159)
13 2pa8_D DNA-directed RNA polyme 100.0 1.9E-29 6.6E-34 254.4 12.4 112 205-326 3-135 (265)
14 1twf_C B44.5, DNA-directed RNA 99.9 1.1E-28 3.7E-33 254.4 7.5 116 199-326 3-149 (318)
15 3h0g_C DNA-directed RNA polyme 99.9 1.3E-26 4.4E-31 236.4 4.9 119 201-326 4-150 (297)
16 3k4g_A DNA-directed RNA polyme 99.9 1.7E-23 5.8E-28 176.7 6.1 74 363-436 5-78 (86)
17 3gfk_B DNA-directed RNA polyme 99.9 3.3E-23 1.1E-27 172.5 5.9 69 363-431 9-77 (79)
18 1coo_A RNA polymerase alpha su 99.9 3.9E-23 1.3E-27 178.5 4.8 71 363-433 17-87 (98)
19 1z3e_B DNA-directed RNA polyme 99.9 1.8E-22 6.1E-27 166.0 5.2 66 366-431 5-70 (73)
20 2xzm_D Ribosomal protein S4 co 99.8 2.5E-19 8.5E-24 171.2 4.2 81 47-148 78-160 (181)
21 3j20_D 30S ribosomal protein S 99.7 1.4E-17 4.7E-22 158.7 7.6 97 54-150 21-158 (180)
22 2cqj_A BRMS2, U3 small nucleol 99.6 4.6E-16 1.6E-20 127.2 2.2 59 93-151 4-64 (71)
23 3u5c_J 40S ribosomal protein S 99.6 7.7E-16 2.6E-20 148.3 2.6 66 85-150 95-162 (197)
24 3iz6_C 40S ribosomal protein S 99.5 2.6E-17 8.9E-22 158.2 -12.1 87 61-147 57-159 (195)
25 1p9k_A ORF, hypothetical prote 98.7 1.4E-09 4.9E-14 89.9 0.3 53 97-149 21-73 (79)
26 1dm9_A Hypothetical 15.5 KD pr 98.7 1.6E-08 5.3E-13 92.0 6.8 54 96-150 8-61 (133)
27 3hp7_A Hemolysin, putative; st 98.6 9.1E-08 3.1E-12 97.6 8.0 86 96-182 6-98 (291)
28 2k6p_A Uncharacterized protein 98.5 1.2E-08 3.9E-13 86.5 0.4 53 97-150 1-53 (92)
29 3j20_E 30S ribosomal protein S 98.2 4.5E-07 1.5E-11 89.8 2.8 46 105-150 52-97 (243)
30 3kbg_A 30S ribosomal protein S 98.0 3.7E-06 1.3E-10 81.8 3.8 42 105-146 17-58 (213)
31 1vio_A Ribosomal small subunit 97.9 5.9E-06 2E-10 81.6 5.0 52 96-148 2-53 (243)
32 3dh3_A Ribosomal large subunit 97.9 8E-06 2.7E-10 83.2 5.6 52 96-149 6-57 (290)
33 1ksk_A Ribosomal small subunit 97.9 8.1E-06 2.8E-10 80.1 5.2 51 97-148 4-54 (234)
34 1v9f_A Ribosomal large subunit 97.5 1.3E-05 4.4E-10 82.5 0.0 53 96-148 16-68 (325)
35 2pa8_L DNA-directed RNA polyme 96.9 0.0097 3.3E-07 50.6 11.2 84 204-347 2-85 (92)
36 1twf_K B13.6, DNA-directed RNA 95.9 0.081 2.8E-06 47.1 11.8 83 205-347 21-103 (120)
37 1xpp_A TA1416, DNA-directed RN 95.9 0.041 1.4E-06 48.6 9.5 45 204-253 12-56 (115)
38 1b22_A DNA repair protein RAD5 95.7 0.004 1.4E-07 55.0 2.3 56 370-425 23-81 (114)
39 3h0g_K DNA-directed RNA polyme 94.9 0.06 2.1E-06 48.1 7.3 33 205-241 18-52 (123)
40 1wcn_A Transcription elongatio 94.8 0.023 7.8E-07 45.8 3.8 49 376-424 14-62 (70)
41 1u9l_A Transcription elongatio 94.2 0.025 8.5E-07 45.7 2.8 56 370-425 7-62 (70)
42 1jil_A Tyrrs, tyrosyl-tRNA syn 93.8 0.011 3.9E-07 63.0 0.0 48 97-144 353-400 (420)
43 2jan_A Tyrosyl-tRNA synthetase 93.3 0.044 1.5E-06 58.7 3.6 45 98-142 357-401 (432)
44 1h3f_A Tyrosyl-tRNA synthetase 93.2 0.086 2.9E-06 56.4 5.6 49 98-146 370-418 (432)
45 2kz3_A Putative uncharacterize 91.4 0.15 5.2E-06 42.5 3.8 53 372-424 6-59 (83)
46 2ts1_A Tyrosyl-tRNA synthetase 90.9 0.043 1.5E-06 58.5 0.0 47 98-144 353-399 (419)
47 3lda_A DNA repair protein RAD5 90.7 0.19 6.5E-06 53.0 4.7 55 370-424 81-138 (400)
48 2i1q_A DNA repair and recombin 90.6 0.19 6.3E-06 50.6 4.4 54 371-424 4-58 (322)
49 3u5c_E RP5, S7, YS6, 40S ribos 90.3 0.17 5.7E-06 50.6 3.6 46 105-150 51-96 (261)
50 2ktl_A Tyrosyl-tRNA synthetase 89.8 0.16 5.4E-06 47.6 2.8 33 101-133 54-86 (164)
51 3iz6_D 40S ribosomal protein S 89.5 0.17 5.9E-06 50.6 3.0 46 105-150 51-96 (265)
52 2xzm_W 40S ribosomal protein S 89.4 0.31 1.1E-05 48.7 4.7 46 105-150 51-98 (260)
53 2z43_A DNA repair and recombin 87.2 0.12 3.9E-06 52.5 0.0 54 370-423 12-66 (324)
54 1pzn_A RAD51, DNA repair and r 86.3 0.46 1.6E-05 48.8 4.0 53 370-422 35-88 (349)
55 1v5w_A DMC1, meiotic recombina 86.1 0.14 4.9E-06 52.4 0.0 54 370-423 25-81 (343)
56 4glx_A DNA ligase; inhibitor, 80.5 0.97 3.3E-05 50.1 3.7 70 376-445 453-526 (586)
57 1im4_A DBH; DNA polymerase PAL 75.4 0.9 3.1E-05 43.9 1.4 38 368-405 182-220 (221)
58 3bq0_A POL IV, DBH, DNA polyme 74.0 1.9 6.5E-05 44.2 3.5 53 369-423 178-231 (354)
59 1z00_A DNA excision repair pro 72.4 3.2 0.00011 34.0 3.8 43 380-424 31-73 (89)
60 4f4y_A POL IV, DNA polymerase 70.8 2 6.9E-05 44.4 2.8 53 368-422 177-230 (362)
61 1kft_A UVRC, excinuclease ABC 70.7 3.3 0.00011 33.1 3.5 43 379-423 35-77 (78)
62 2a1j_B DNA excision repair pro 70.4 3.3 0.00011 34.1 3.6 43 380-424 44-86 (91)
63 1jx4_A DNA polymerase IV (fami 70.2 2.5 8.7E-05 43.2 3.4 52 369-422 177-229 (352)
64 1vq8_Y 50S ribosomal protein L 67.3 1.1 3.9E-05 44.2 0.0 49 376-424 22-70 (241)
65 4dez_A POL IV 1, DNA polymeras 64.2 4.4 0.00015 41.5 3.8 52 368-421 176-228 (356)
66 1x2i_A HEF helicase/nuclease; 60.2 6.1 0.00021 30.7 3.1 43 380-424 26-68 (75)
67 3rpf_C Molybdopterin convertin 59.6 15 0.0005 28.9 5.3 30 120-149 41-70 (74)
68 2owo_A DNA ligase; protein-DNA 59.5 5.9 0.0002 44.6 3.9 67 376-442 453-523 (671)
69 3gqc_A DNA repair protein REV1 58.2 5.1 0.00018 43.5 3.1 56 369-428 314-370 (504)
70 1dgs_A DNA ligase; AMP complex 58.1 6.8 0.00023 44.1 4.1 66 376-441 448-517 (667)
71 2zj8_A DNA helicase, putative 56.7 7.1 0.00024 43.4 4.0 50 378-427 655-704 (720)
72 1fm0_D Molybdopterin convertin 55.9 19 0.00067 28.3 5.5 26 123-149 52-77 (81)
73 2aq4_A DNA repair protein REV1 54.6 6.9 0.00024 41.3 3.3 52 369-422 240-295 (434)
74 3osn_A DNA polymerase IOTA; ho 51.3 7.9 0.00027 40.9 3.1 49 370-420 233-283 (420)
75 4ecq_A DNA polymerase ETA; tra 50.1 7.7 0.00026 41.1 2.8 56 369-428 252-309 (435)
76 2zjr_S 50S ribosomal protein L 48.9 4.9 0.00017 39.6 0.9 53 276-328 117-175 (237)
77 2kl0_A Putative thiamin biosyn 46.7 10 0.00036 30.2 2.4 25 124-148 33-60 (73)
78 2q5w_D Molybdopterin convertin 45.6 15 0.00052 28.7 3.2 25 123-148 48-72 (77)
79 2w9m_A Polymerase X; SAXS, DNA 45.3 8.7 0.0003 42.2 2.3 45 379-424 108-153 (578)
80 3dwg_C 9.5 kDa culture filtrat 44.6 15 0.0005 30.1 3.1 26 123-148 60-88 (93)
81 2g1e_A Hypothetical protein TA 44.5 13 0.00043 30.0 2.6 26 123-148 57-85 (90)
82 3im1_A Protein SNU246, PRE-mRN 44.1 19 0.00066 36.3 4.5 95 327-425 112-213 (328)
83 1feu_A 50S ribosomal protein L 44.0 11 0.00039 36.0 2.7 52 277-328 122-178 (206)
84 2cu3_A Unknown function protei 43.2 20 0.00067 27.4 3.5 26 123-148 31-59 (64)
85 3po0_A Small archaeal modifier 42.4 19 0.00064 29.1 3.4 26 123-149 60-85 (89)
86 2hj1_A Hypothetical protein; s 42.3 11 0.00037 32.0 2.0 27 122-149 59-85 (97)
87 1tyg_B YJBS; alpha beta barrel 42.0 20 0.00067 29.8 3.5 25 124-148 55-82 (87)
88 1vjk_A Molybdopterin convertin 41.2 15 0.00052 30.5 2.7 26 123-149 69-94 (98)
89 2k5p_A THis protein, thiamine- 40.1 12 0.0004 30.3 1.8 25 124-148 37-64 (78)
90 4ejq_A Kinesin-like protein KI 37.9 19 0.00065 32.6 3.0 26 122-148 110-135 (154)
91 1f0z_A THis protein; ubiquitin 37.8 14 0.00048 28.4 1.8 25 124-148 34-61 (66)
92 3fm8_A Kinesin-like protein KI 37.7 19 0.00064 31.7 2.8 25 123-148 91-115 (124)
93 1rws_A Hypothetical protein PF 37.3 13 0.00045 29.6 1.6 25 123-148 48-72 (77)
94 2hc8_A PACS, cation-transporti 36.4 24 0.00082 30.3 3.3 28 123-150 15-42 (113)
95 4egx_A Kinesin-like protein KI 35.8 23 0.00077 33.3 3.2 26 122-148 140-165 (184)
96 3pzp_A DNA polymerase kappa; D 35.3 23 0.00077 38.5 3.6 49 368-419 336-385 (517)
97 2bgw_A XPF endonuclease; hydro 31.7 24 0.00084 33.3 2.8 44 379-424 173-216 (219)
98 1ryj_A Unknown; beta/alpha pro 31.4 37 0.0013 26.4 3.4 24 124-148 42-65 (70)
99 2a1j_A DNA repair endonuclease 30.9 33 0.0011 26.4 2.9 41 379-423 15-56 (63)
100 3hx1_A SLR1951 protein; P74513 30.4 26 0.0009 30.7 2.6 25 122-148 82-106 (131)
101 2k9x_A Tburm1, uncharacterized 30.1 25 0.00084 30.4 2.3 24 124-147 70-96 (110)
102 3b0x_A DNA polymerase beta fam 29.7 25 0.00087 38.4 2.9 50 376-425 100-151 (575)
103 2q0z_X Protein Pro2281; SEC63, 29.4 37 0.0013 34.4 3.9 94 327-425 115-217 (339)
104 1t94_A Polymerase (DNA directe 29.2 31 0.001 36.6 3.3 56 368-428 280-336 (459)
105 3uv0_A Mutator 2, isoform B; F 29.0 15 0.0005 31.7 0.6 22 121-144 61-82 (102)
106 1wln_A Afadin; beta sandwich, 27.9 27 0.00093 30.0 2.2 27 121-148 79-105 (120)
107 2l52_A Methanosarcina acetivor 27.8 25 0.00086 29.3 1.9 26 123-148 66-94 (99)
108 3mab_A Uncharacterized protein 27.6 32 0.0011 28.9 2.5 36 376-411 11-47 (93)
109 3hvz_A Uncharacterized protein 26.5 48 0.0016 26.8 3.3 23 124-147 44-66 (78)
110 2qjl_A URM1, ubiquitin-related 26.4 43 0.0015 27.8 3.1 26 123-148 66-94 (99)
111 2kp7_A Crossover junction endo 25.8 32 0.0011 28.5 2.1 40 380-425 42-81 (87)
112 2kg5_A ARF-GAP, RHO-GAP domain 25.6 70 0.0024 27.0 4.3 50 370-423 31-80 (100)
113 1ixr_A Holliday junction DNA h 25.4 45 0.0015 31.5 3.3 47 378-424 82-129 (191)
114 3po8_A RV0020C protein, putati 24.8 35 0.0012 28.1 2.2 24 123-148 66-89 (100)
115 2kmm_A Guanosine-3',5'-BIS(dip 24.4 49 0.0017 25.3 2.9 23 124-147 39-61 (73)
116 3gqs_A Adenylate cyclase-like 23.8 33 0.0011 28.7 1.9 25 123-148 70-94 (106)
117 3bqs_A Uncharacterized protein 23.8 31 0.0011 28.9 1.7 76 376-459 11-87 (93)
118 2jqj_A DNA damage response pro 23.2 39 0.0013 30.2 2.4 29 120-148 85-113 (151)
119 2l32_A Small archaeal modifier 22.1 35 0.0012 27.2 1.6 24 123-148 38-61 (74)
120 2va8_A SSO2462, SKI2-type heli 21.8 32 0.0011 38.0 1.8 46 377-423 665-712 (715)
121 1wv3_A Similar to DNA segregat 21.7 42 0.0014 32.5 2.4 26 121-147 134-160 (238)
122 3hil_A Ephrin type-A receptor 21.3 65 0.0022 26.2 3.1 34 372-406 30-63 (82)
123 4h87_A Kanadaptin; FHA domain 21.0 61 0.0021 28.4 3.1 28 122-149 94-122 (130)
124 2xt9_B Putative signal transdu 20.8 49 0.0017 28.0 2.4 25 122-148 73-97 (115)
125 3h8m_A Ephrin type-A receptor 20.3 45 0.0015 27.6 2.0 34 372-406 32-65 (90)
126 1v8c_A MOAD related protein; r 20.2 61 0.0021 29.8 3.1 27 123-149 54-83 (168)
127 1wgk_A Riken cDNA 2900073H19 p 20.2 41 0.0014 29.1 1.8 26 123-148 75-103 (114)
128 3c1y_A DNA integrity scanning 20.0 53 0.0018 34.4 2.9 35 390-424 335-369 (377)
129 3arc_U Photosystem II 12 kDa e 20.0 35 0.0012 28.8 1.3 28 399-426 49-76 (97)
No 1
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=100.00 E-value=3.5e-69 Score=556.38 Aligned_cols=243 Identities=56% Similarity=0.880 Sum_probs=151.7
Q ss_pred ccccccCCCeeEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHH
Q psy8861 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDII 273 (550)
Q Consensus 194 l~inEll~p~~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~Ii 273 (550)
..|.++.+|+.+++.+.+++||+|+++|||+|||+|+||||||+|||++||+||++|+|+|+.|||++||||+|||+||+
T Consensus 3 ~~~~~~~~p~~~~v~~~~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~V~I~gv~Hefs~Ipgv~Edv~eii 82 (329)
T 3lu0_A 3 GSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 (329)
T ss_dssp CSTTTSSSCCCCCEEECTTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEEEEESSCSSTTCCCTTBSSCHHHHH
T ss_pred hhhhhccCCceEEEEEcCCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEEEEEeCccccccccccccCCHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccceeeeccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcC-C--------------------------
Q psy8861 274 LNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLS-D-------------------------- 326 (550)
Q Consensus 274 lNLK~i~~~~~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~-~-------------------------- 326 (550)
+|||+++|+.++.|++.++|+++||++|||+||++|++|+|+|||+|||||+ +
T Consensus 83 lNlK~i~~k~~~~~~~~~~L~~~Gp~~VtA~DI~~~~~veivnpd~~IatL~~~~~~L~me~~i~~G~GY~~a~~~~~~~ 162 (329)
T 3lu0_A 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSE 162 (329)
T ss_dssp HHHHSCCCEESSCSCEEEEECCCSSSCEETTSSCCCSSEECSCTTCEEECBCSSCCCCCEEEEEEEESSEECTTTSCCCS
T ss_pred hhhccceEecCCCceEEEEEEEeCCeEEEeeeeccCCCCEEeCCCcEEEEEccCCcEEEEEEEEECcccceechhccccc
Confidence 9999999999989999999999999999999999999999999999999999 5
Q ss_pred --------------------------------------------------hHHHHHHHHHHHHHHhhhhhccCCCCCccc
Q psy8861 327 --------------------------------------------------NEEAIRQSARVLVDQLNVFAALENTPVKKE 356 (550)
Q Consensus 327 --------------------------------------------------P~~Al~~Aa~iL~~~~~~f~~~~~~~~~~~ 356 (550)
|+||+.+||+||++||++|.+++.......
T Consensus 163 ~~~~~ig~i~iDa~fsPV~~Vny~Ve~~rvgq~td~dkL~leI~TdGsi~P~eAl~~Aa~iL~~~l~~f~~~~~~~~~~~ 242 (329)
T 3lu0_A 163 EDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 (329)
T ss_dssp TTSSSCCCEECCEECCCEEEEEEEEEEECCSSCSCEEEEEEEEEECSSSCHHHHHHHHHHHHHHHTTTSSSCC-------
T ss_pred cccCcCceEeeCCCCCceeeEEEEEeccccCCCcccceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999998764333221
Q ss_pred cCccccccCCcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcccccccccc
Q psy8861 357 LDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYMRHRHGF 436 (550)
Q Consensus 357 ~~~~~~~~~~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lmrhrk~~ 436 (550)
.++. +..++++.++||+|+||||||||||+|||+||+||+++|++||+++||||+||++||+++|+++||+|++.--.|
T Consensus 243 ~~~~-~~~~~~l~~~I~eLeLsvRs~NCLKra~I~tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~~~gl~l~~~~~~~ 321 (329)
T 3lu0_A 243 KEEK-PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-chhhhhhhhhHHhhcCCHHHHHHHHHcCCcCHHHHhhCCHHHHhhCcCCChhhHHHHHHHHHHcCCCcCCccccC
Confidence 1111 345677889999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred c
Q psy8861 437 R 437 (550)
Q Consensus 437 r 437 (550)
.
T Consensus 322 ~ 322 (329)
T 3lu0_A 322 P 322 (329)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=100.00 E-value=6.3e-66 Score=530.75 Aligned_cols=231 Identities=36% Similarity=0.573 Sum_probs=145.1
Q ss_pred cCCCeeEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHHhcccc
Q psy8861 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKG 278 (550)
Q Consensus 199 ll~p~~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~IilNLK~ 278 (550)
+.+|+ |++.+.+++|++|+++|||+|||+|+||||||+|||++||+||++|+|+|+.|||++||||+|||+||+||||+
T Consensus 6 ~~~p~-i~i~~~~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~AI~~V~I~~v~He~~~Ipgv~Edv~eIilNlk~ 84 (315)
T 2a6h_A 6 LKAPV-FTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKE 84 (315)
T ss_dssp TSCCE-EEEEEETTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEEEEEEEEESSCCSTTCBCTTBSSBHHHHHHHHHT
T ss_pred ccCCe-EEEEEccCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCceEEEEEEEecchhccCCCCCccCCHHHHhhhhhe
Confidence 67897 88888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeec--cCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcCC------------------------------
Q psy8861 279 VILKLY--NRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSD------------------------------ 326 (550)
Q Consensus 279 i~~~~~--~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~~------------------------------ 326 (550)
++|+.+ +++++.++|+++||++|||+||++|++|+|+|||+|||||++
T Consensus 85 i~~~~~~~~~~~~~~~L~v~gp~~VtA~Di~~~~~v~ivnpd~~IatL~~g~~l~me~~~~kG~Gy~~ak~~~~~~p~g~ 164 (315)
T 2a6h_A 85 LVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINA 164 (315)
T ss_dssp CCEEECSTTCSBCCEEEEEESSCEEEGGGSCCCTTEEESCTTCEEEEBCSSCEEEEEEEEEEEESEECHHHHCCCSSTTC
T ss_pred EEEecccCCCCeEEEEEEEecCeeEEhhhCCcCCCcEEcCCCeEEEEECCCCEEEEEEEEEecCCccccccCcccCCcce
Confidence 999998 788999999999999999999999999999999999999987
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHHhhhhhccCCCCCcc-c--cC-cc
Q psy8861 327 ------------------------------------------NEEAIRQSARVLVDQLNVFAALENTPVKK-E--LD-SS 360 (550)
Q Consensus 327 ------------------------------------------P~~Al~~Aa~iL~~~~~~f~~~~~~~~~~-~--~~-~~ 360 (550)
|++|+.+|++||++||+.|.++.+..... + .+ ++
T Consensus 165 i~iDa~f~pv~~v~y~ve~~rv~~~~~~dkli~eIeT~Gsi~P~eal~~A~~iL~~~l~~f~~~~~~~~~~~~~~~~~~~ 244 (315)
T 2a6h_A 165 IPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAKEPEA 244 (315)
T ss_dssp EECCEECCCEEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCSCC---------------
T ss_pred EeecCCCCCceeEEEEeeeeeecccccccEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 99999999999999999998875322211 1 11 11
Q ss_pred ccccCCcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcccc
Q psy8861 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYM 430 (550)
Q Consensus 361 ~~~~~~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lm 430 (550)
.+...+.+.++||+|+||||||||||+|||+|||||+++|++||+++||||+||++||+++|+++||+|.
T Consensus 245 ~~~~~~~l~~~i~~L~LsvRs~NcLk~a~I~ti~dL~~~se~~l~~~~n~G~kSl~Ei~~~L~~~gl~l~ 314 (315)
T 2a6h_A 245 PPEQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLK 314 (315)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccCcHHHccCcHHHHHHHHHcCCcCHHHHhhCCHHHHhcCCCCCcchHHHHHHHHHHhCCCCC
Confidence 1234567889999999999999999999999999999999999999999999999999999999999884
No 3
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=100.00 E-value=7.8e-55 Score=422.88 Aligned_cols=199 Identities=61% Similarity=1.027 Sum_probs=189.6
Q ss_pred CCCCCCchhhhhhcCCCCccccccccccccccCCCCCCCCCCCCcccccchhhhhHhhhhhHhhhCCcHHHHHHHHHHhh
Q psy8861 2 ARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGA 81 (550)
Q Consensus 2 ~r~~gp~~Ki~Rrlg~~l~~~~~~~~~~~k~~~~~~pg~~~~~~~~k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~~~a~ 81 (550)
|||+||++|+|||+|+++|++++.+|+++|++.+.+|||||+.++ |.|+|++||+||||+|++||++|+||++||++|.
T Consensus 1 ary~gp~~k~~Rr~g~~l~~~~~~~~~~~k~~~~~~pgqhg~~r~-K~S~y~~qL~eKQklr~~YG~~EkQf~~~~~~A~ 79 (205)
T 3r8n_D 1 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAA 79 (205)
T ss_dssp CCCCSCSHHHHHHHTSCCSSSTTSSCSSCSSCCSSCSSSSCSSCC-CCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCccCchhhhhccCCCCcCCCcccccccCCCcccCCCCCCCCCCC-cccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 799999999999999999988778899999887779999998654 8999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCchhhHHHHhhhh
Q psy8861 82 RLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE 161 (550)
Q Consensus 82 ~~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~~~~~~i~~~~~ 161 (550)
+.+|+||++|+++||+|||++|+++||+.||.+|+|||.||||+|||++|++|||.|++||+|+|.+..++...|+++++
T Consensus 80 ~~kG~tg~~ll~lle~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~~~~~~~~~~~~~ 159 (205)
T 3r8n_D 80 RLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 159 (205)
T ss_dssp HSSSCHHHHHHHHHHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSSSCSCHHHHHHHH
T ss_pred hcCCCcHHHHHHhhHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCcEEEecCccEEEEecccCcccccccccccCC
Q psy8861 162 LSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLLK 201 (550)
Q Consensus 162 ~~~~~~~p~~l~vd~~~~~g~~~~~P~~~~Ipl~inEll~ 201 (550)
......+|+||++|.++++|+|++.|+++|||+++||+++
T Consensus 160 ~~~~~~~p~~l~~d~~~~~g~~~~~p~r~~i~~~i~e~lv 199 (205)
T 3r8n_D 160 LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI 199 (205)
T ss_dssp HHTTSCCCSSCCBCSSSCBBCBCSCCCSSSSCSSCCTTHH
T ss_pred hcccCCCCCeEEEEcccCEEEEEeccCHHHCCCCCccceE
Confidence 7665678999999999999999999999999999999874
No 4
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9e-52 Score=400.80 Aligned_cols=193 Identities=36% Similarity=0.540 Sum_probs=178.9
Q ss_pred CCCCCCCchhhhhhcCCCCccccccccccccccCCCCCCCCCCCCcccccchhhhhHhhhhhHhhhCCcHHHHHHHHHHh
Q psy8861 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEG 80 (550)
Q Consensus 1 M~r~~gp~~Ki~Rrlg~~l~~~~~~~~~~~k~~~~~~pg~~~~~~~~k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~~~a 80 (550)
||||+||++|+|||+|. +++. ++|+. .++|||||+++++|.|+|++||+||||++++||++|+||++||++|
T Consensus 1 Mary~gp~~k~~Rr~g~-l~g~------~~k~~-~~~pg~hg~~~~~K~S~y~~~l~ekqkl~~~yGl~e~q~~~~~~~a 72 (201)
T 3bbn_D 1 MSRYRGPRFKKIRRLGA-LPGL------TNKRP-RAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGITERQLLKYVRIA 72 (201)
T ss_dssp CCSCCSCCTTSSSSSSS-CCCS------SSCCC-SCCSSSCSSSCCCCCCTTHHHHTTHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCCChhhhcccCCC-CCCC------CCCcc-CCCCCccccccccccchHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999999999999996 4432 23433 4699999966666899999999999999999999999999999999
Q ss_pred hccCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCchhhHHHHhhh
Q psy8861 81 ARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSL 160 (550)
Q Consensus 81 ~~~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~~~~~~i~~~~ 160 (550)
.+.+|.|+++|+++||+|||++|++.||+.||.+|+|||.||||+|||++|++|||.|++||+|+|.+..+....+++++
T Consensus 73 ~~~~g~tg~~ll~~Le~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~r~~~~i~~~~ 152 (201)
T 3bbn_D 73 RKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSL 152 (201)
T ss_dssp HHSSSCTTTTTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSCHHHHHHS
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCcEEEecCccEEEEecccCcccccccccccCC
Q psy8861 161 ELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLLK 201 (550)
Q Consensus 161 ~~~~~~~~p~~l~vd~~~~~g~~~~~P~~~~Ipl~inEll~ 201 (550)
+......+|+||++|.++++|+|++.|+++|||+++||+++
T Consensus 153 ~~~~~~~~p~~l~~d~~~~~g~~~~~p~r~~i~~~ine~lv 193 (201)
T 3bbn_D 153 DLSPREELPKHLTLNPFPYKGLVNQIIDSKWVGLKINELLV 193 (201)
T ss_dssp SSTTTSCCCTTEEEETTTTEEEECSCCCGGGCCCSCCHHHH
T ss_pred HhhcccCCCCceEeecccCEEEEEecCCHHHCCCCCCcceE
Confidence 87665578999999999999999999999999999999865
No 5
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=100.00 E-value=4.4e-51 Score=363.46 Aligned_cols=119 Identities=65% Similarity=1.011 Sum_probs=117.9
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHHHHHHhhcCChHHHHHHH
Q psy8861 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDRKITIKLF 509 (550)
Q Consensus 430 mrhrk~~rklgr~~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~~~~~~~kLf 509 (550)
|+|+++++||||+++||+||||||+||||+||+|+||++||||+|++||+|||+||+||+|++|+|.+||+|+++|+|||
T Consensus 1 MrH~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF 80 (120)
T 3r8s_N 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF 80 (120)
T ss_dssp CCTTCCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCeEEEEeccCCCCCCCCeEEEEeccCC
Q psy8861 510 SELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQT 548 (550)
Q Consensus 510 ~~l~pry~~r~gGyTRi~k~~~R~gD~A~ma~iElv~~~ 548 (550)
++|+|||++|+||||||+|+++|.||+||||||||||++
T Consensus 81 ~elapry~~R~GGYTRI~K~~~R~GD~A~maiiELVd~~ 119 (120)
T 3r8s_N 81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119 (120)
T ss_dssp HTHHHHTTTCCSCCEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred HHHHHHhcCCCCCeEEEEECCCCCCCCcCeEEEEEecCC
Confidence 999999999999999999999999999999999999986
No 6
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=100.00 E-value=2.4e-50 Score=358.49 Aligned_cols=117 Identities=50% Similarity=0.757 Sum_probs=103.5
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHHHHHHhhcCChHHHHHHH
Q psy8861 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDRKITIKLF 509 (550)
Q Consensus 430 mrhrk~~rklgr~~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~~~~~~~kLf 509 (550)
|+|+++++||||+++||++|||||+||||+||+|+||++||||+|++||+|||+||+||+|++|+|.+||+|+++|+|||
T Consensus 1 Mrh~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF 80 (118)
T 1gd8_A 1 MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLF 80 (118)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCeEEEEecc-CCCCCCCCeEEEEecc
Q psy8861 510 SELGPRYIKINGGYVRILKMG-FRVGDNAPMAFIELLN 546 (550)
Q Consensus 510 ~~l~pry~~r~gGyTRi~k~~-~R~gD~A~ma~iElv~ 546 (550)
++|+|||++||||||||+|++ +|.||+||||||||||
T Consensus 81 ~~iapry~~R~GGYTRI~K~~~~R~GD~A~maiiELVd 118 (118)
T 1gd8_A 81 DEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 118 (118)
T ss_dssp HTHHHHTSSCCSCCEEEEEEEEECTTTCCEEEEEEECC
T ss_pred HHHHHHhCCCCCCeEEEEECCCCCCCCCCCeEEEEecC
Confidence 999999999999999999999 9999999999999997
No 7
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=100.00 E-value=4.3e-50 Score=355.51 Aligned_cols=116 Identities=45% Similarity=0.678 Sum_probs=112.6
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHHHHHHhhcCChHHHHHHH
Q psy8861 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDRKITIKLF 509 (550)
Q Consensus 430 mrhrk~~rklgr~~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~~~~~~~kLf 509 (550)
|+|+++++||||+++||++|||||+||||+||+|+||++||||+|++||+|||+||+||+|++|+|.+||+|+++++|||
T Consensus 1 Mrh~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF 80 (116)
T 2zjr_K 1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVM 80 (116)
T ss_dssp --CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCeEEEEeccCCCCCCCCeEEEEec
Q psy8861 510 SELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545 (550)
Q Consensus 510 ~~l~pry~~r~gGyTRi~k~~~R~gD~A~ma~iElv 545 (550)
++|+|||++|+||||||+|+++|.||+|||||||||
T Consensus 81 ~~iapry~~R~GGYTRI~K~~~R~GD~A~maiiElV 116 (116)
T 2zjr_K 81 DEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV 116 (116)
T ss_dssp HTHHHHTTTSCSCCCEEEECCCCTTTCCCEEEEEC-
T ss_pred HHHHHHhCCCCCCeeEEEECCCCCCCCCceEEEEeC
Confidence 999999999999999999999999999999999998
No 8
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=100.00 E-value=1e-47 Score=375.49 Aligned_cols=200 Identities=46% Similarity=0.823 Sum_probs=182.7
Q ss_pred CCCCCCCchhhhhhcCCCCccccccccccccccC---CCCCCCCCCCCcccccchhhhhHhhhhhHhhhCCcHHHHHHHH
Q psy8861 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKL---DLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYF 77 (550)
Q Consensus 1 M~r~~gp~~Ki~Rrlg~~l~~~~~~~~~~~k~~~---~~~pg~~~~~~~~k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~ 77 (550)
||||+||++|+|||+|++||++ +.+|+++|++. +|+|||||+++.+|.|+|++||+||||++++||+.|+||.+||
T Consensus 1 m~r~~gp~~k~~rr~g~~l~~~-~~~~~~~k~~~~~~~~~pg~h~~~~~~k~s~y~~~L~ekqkl~~~Yg~~e~q~~~y~ 79 (209)
T 2vqe_D 1 MGRYIGPVCRLCRREGVKLYLK-GERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLF 79 (209)
T ss_dssp -CCCCSCCHHHHHHHSSCCCTT-STTSSSTTCSGGGCCSCSSTTTTSCCCCCCHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCccCchhhhhhhCCCCcCCC-cccccccccccccCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999999999999986 55677777643 4899999964425899999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCchhhHHHH
Q psy8861 78 IEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIA 157 (550)
Q Consensus 78 ~~a~~~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~~~~~~i~ 157 (550)
..|.+..|.|+++|+++||+|||++|++.||+.||.+|+|||.||+|+|||++|++||+.|++||+|+|...++....+.
T Consensus 80 ~~a~~~~g~t~~~l~~~le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~~~~~ 159 (209)
T 2vqe_D 80 EEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIR 159 (209)
T ss_dssp HHHHHSSSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHH
T ss_pred HHHHHccCCcchHHHHhHHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877787
Q ss_pred hhhhccCCCCCCCcEEEecCccEEEEecccCcccccccccccCC
Q psy8861 158 NSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLLK 201 (550)
Q Consensus 158 ~~~~~~~~~~~p~~l~vd~~~~~g~~~~~P~~~~Ipl~inEll~ 201 (550)
.++.......+|.|+++|.+...|+|.++|+++|||+++||+++
T Consensus 160 ~~l~~~~~~kp~g~l~~d~~~~~g~v~~lp~r~~i~~~ine~lv 203 (209)
T 2vqe_D 160 QNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLV 203 (209)
T ss_dssp HHHHHTTTCCCCTTCCEETTTTEEECCSCCCGGGCCCSCCHHHH
T ss_pred HHHHhcCCCCCCCeEEEecccCeEEEEEcCCHHHCCCCCCceeE
Confidence 88876643457999999999999999999999999999999864
No 9
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=9.5e-48 Score=364.46 Aligned_cols=120 Identities=40% Similarity=0.663 Sum_probs=115.4
Q ss_pred CccccccccccccCCCChHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHHHHHHhhcCChHHH
Q psy8861 426 GKYYMRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDRKIT 505 (550)
Q Consensus 426 gl~lmrhrk~~rklgr~~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~~~~~~ 505 (550)
++..|+|+++++||||+++||++|||||+|+||+||||+||++||||+|+|||||||+||+||+|++|+|.+||+|+++|
T Consensus 86 ~~~~MrH~~~~rKLgRtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V 165 (205)
T 3bbo_P 86 RVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIV 165 (205)
T ss_dssp ----CCTTCCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHH
T ss_pred chhhcCCccCCCCCCCChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCCCeEEEEeccCCCCCCCCeEEEEec
Q psy8861 506 IKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545 (550)
Q Consensus 506 ~kLf~~l~pry~~r~gGyTRi~k~~~R~gD~A~ma~iElv 545 (550)
+|||+||+|||+||+||||||+|+++|+||+|||||||||
T Consensus 166 ~KLF~eiaPRY~dR~GGYTRIlKlg~R~GD~ApMAiIELV 205 (205)
T 3bbo_P 166 HALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205 (205)
T ss_dssp HHHTTSSGGGGSSCCSCCEECCBCSCCSSSCCCCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCeeEEEECCCCCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999998
No 10
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=100.00 E-value=3e-45 Score=327.46 Aligned_cols=107 Identities=33% Similarity=0.459 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChh--HHHHHHhhcCChHHHHHHHhhhhhccCCCC
Q psy8861 443 SSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLS--NKRLAFSYLRDRKITIKLFSELGPRYIKIN 520 (550)
Q Consensus 443 ~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~--~~r~~~~~l~~~~~~~kLf~~l~pry~~r~ 520 (550)
++||+||||||+|+||+||||+||++||||+|++||+|||+||+|++| ++|+|.+||+|+++|+|||++|+|||++|+
T Consensus 2 ~~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R~ 81 (122)
T 2cqm_A 2 SSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQT 81 (122)
T ss_dssp CCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999999999999999999999 569999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCCCeEEEEeccCCC
Q psy8861 521 GGYVRILKMGFRVGDNAPMAFIELLNQTK 549 (550)
Q Consensus 521 gGyTRi~k~~~R~gD~A~ma~iElv~~~~ 549 (550)
||||||+|+++|.||+||||||||||+|.
T Consensus 82 GGYTRI~K~~~R~GD~A~maiIELVd~p~ 110 (122)
T 2cqm_A 82 GGYTRMLQIPNRSLDRAKMAVIEYKGNCL 110 (122)
T ss_dssp SCCEEEEEECCCSSSCCCEEEEEESSCCC
T ss_pred CCeeEEEECCCCCCCCCCeEEEEeCCCCC
Confidence 99999999999999999999999999885
No 11
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=100.00 E-value=7.2e-42 Score=339.52 Aligned_cols=131 Identities=55% Similarity=0.904 Sum_probs=127.3
Q ss_pred cccccCCCeeEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHHh
Q psy8861 195 DINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIIL 274 (550)
Q Consensus 195 ~inEll~p~~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~Iil 274 (550)
.+.++.+|..+++.+.+++|++|.++|||+|||+|+||||||+|||++||+||++|+|+|+.|||++||||+|||+||+|
T Consensus 4 ~~~~~~~p~~i~i~~~~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~V~Ie~v~He~~~Ipgv~Edv~~iil 83 (235)
T 1bdf_A 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 (235)
T ss_dssp CSSCSCCCCEEEEEESSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEEEEETTCCSTTCCCTTBSSCHHHHHH
T ss_pred chhhhcCCceEEEEEccCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEEEEEcceeeccccCCCccCCHHHHhh
Confidence 46788999989999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcC
Q psy8861 275 NLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLS 325 (550)
Q Consensus 275 NLK~i~~~~~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~ 325 (550)
|||+++++.++++++.++|+++||++|||+||+.|++|+|+|||+|||||+
T Consensus 84 Nlk~i~~~~~~~~~~~~~L~v~gp~~VtA~Di~~~~~v~ivnpd~~IatL~ 134 (235)
T 1bdf_A 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 (235)
T ss_dssp HHHTCCEECSSCSEEEEEEEEESSEEEEGGGBCCCSSCEESCTTCEEEEEC
T ss_pred chheeEEeccCCceEEEEEEEecCeEEEhHhCCCCCCCEEcCCCeEEEEEC
Confidence 999999999989999999999999999999999999999999999999995
No 12
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=100.00 E-value=6.7e-36 Score=280.62 Aligned_cols=152 Identities=45% Similarity=0.781 Sum_probs=143.9
Q ss_pred cccchhhhhHhhhhhHhhhCCcHHHHHHHHHHhhccCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEEC
Q psy8861 48 RTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVN 127 (550)
Q Consensus 48 k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~~~a~~~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VN 127 (550)
|.|+|+.||+||||++++||++|+||++||++|.+.+|.|+++|+++||+|||++|++.||+.||.+|+++|.||+|+||
T Consensus 2 k~s~y~~~l~~kqk~~~~yg~~e~q~~~~~~~a~~~~g~~~~~~~~~le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VN 81 (159)
T 1c05_A 2 KLSEYGLQLQEKQKLRHMYGVNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILVD 81 (159)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEET
T ss_pred CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCcccCCCCEEEEccCchhhHHHHhhhhccCCCCCCCcEEEecCccEEEEecccCcccccccccccCC
Q psy8861 128 KKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLLK 201 (550)
Q Consensus 128 g~~v~~ps~~vk~gDiI~v~~~~~~~~~i~~~~~~~~~~~~p~~l~vd~~~~~g~~~~~P~~~~Ipl~inEll~ 201 (550)
|+++++||+.|++||+|+|...++....++.+++.. ..+|.|+++|.+...|+|.++|.++|||+++||+++
T Consensus 82 G~~v~~ps~~V~~gD~I~V~~~~~~~~kl~~al~~~--~~~~g~v~~d~~~~~g~f~~lp~~~~i~~~~~~~lv 153 (159)
T 1c05_A 82 GSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALEAN--NYIPDYLSFDPEKMEGTYTRLPERSELPAEINEALI 153 (159)
T ss_dssp TEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHHTC--CCCCSSEEEETTTTEEEECSCCCTTTSCSSCCSHHH
T ss_pred CEEeCcCCcEeCCCCEEEEeCceehHHHHHHHHHHh--CCCCCeEEEecCCCceEEEeCCCHHHCCCCCChheE
Confidence 999999999999999999998887777777777654 457999999999999999999999999999999764
No 13
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=99.96 E-value=1.9e-29 Score=254.36 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=104.9
Q ss_pred EEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECC---------cccccccccCccccHHHHHhc
Q psy8861 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISG---------ALHEYSSLEGVQEDIIDIILN 275 (550)
Q Consensus 205 i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~g---------v~hEfs~i~Gv~Edv~~IilN 275 (550)
|++.+.+++|++|.++ |||+||||||||+|||++||+||++|+|+| +.|||++|||+.|||+
T Consensus 3 i~i~~~~~~~~~f~l~----g~~~t~~NalRRills~vp~~AI~~V~i~~Ntsvl~DE~v~Hr~~~Ip~~~edv~----- 73 (265)
T 2pa8_D 3 INLLHKDDTRIDLVFE----GYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEAL----- 73 (265)
T ss_dssp EEEEEECSSEEEEEEE----SSCHHHHHHHHHHHHHSCCEEEEEEEEEEEECSSSCHHHHHHHHTTSCBCCTTHH-----
T ss_pred EEEEEcCCCEEEEEEe----CCCHHHHHHHHHHHHHcCccceEEEEEEEeCCCccccHHHHHhhcCCcCcccCch-----
Confidence 6777788999999999 999999999999999999999999999999 9999999999999985
Q ss_pred cccceeeecc--------CceEEEEEEEe---ceeeEEeccCcc-CCCeEEeCCCceEEEcCC
Q psy8861 276 LKGVILKLYN--------RDYAILNLKKF---GKCVVLASDIEL-LSDIELVNPNHIIAHLSD 326 (550)
Q Consensus 276 LK~i~~~~~~--------~~~~~~~l~~~---Gp~~V~A~DI~~-~~~veivnpd~~IatL~~ 326 (550)
|+++++.++ ++++.++|+++ ||++|||+||+. |++|+++|||+|||||.+
T Consensus 74 -k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~V~a~Di~~~~~~v~~~~~~i~I~~L~~ 135 (265)
T 2pa8_D 74 -DTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGT 135 (265)
T ss_dssp -HHSCCGGGCTTCCSSCTTTEEEEEEEEECCSSCEEEEGGGCEESSTTCCBSCSCCEEEEECT
T ss_pred -hhccccccccccccCCCCcEEEEEEEEEecCCCcEEEhhhcccCCCCceecCCCcEEEEeCC
Confidence 778887764 67899999999 999999999996 999999999999999976
No 14
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=99.95 E-value=1.1e-28 Score=254.38 Aligned_cols=116 Identities=18% Similarity=0.272 Sum_probs=105.7
Q ss_pred cCCCeeEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECC---------cccccccccCccccH
Q psy8861 199 LLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISG---------ALHEYSSLEGVQEDI 269 (550)
Q Consensus 199 ll~p~~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~g---------v~hEfs~i~Gv~Edv 269 (550)
+..|+ |++.+.+++|++|.++ |||+||||||||+||||+||+||+.|+|+| +.|||++||||.||+
T Consensus 3 ~~~p~-I~i~~~~~~~~kF~le----G~~~tlaNALRRiLLSevPg~AI~~V~I~~NTSvl~DE~vaHrlglIP~v~eDv 77 (318)
T 1twf_C 3 EEGPQ-VKIREASKDNVDFILS----NVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI 77 (318)
T ss_dssp CCSSB-CCCSCCCSSEECCEEB----SSCHHHHHHHHHHHHHCCCEEEEEEEEEEEECSSSCHHHHHHHHHTSCEEETTG
T ss_pred ccCCe-EEEEEecCCEEEEEEE----ccChhHHHHHHHHHHHcCccceEEEEEEEeCCcccccceeEeecccCCCcccCh
Confidence 45675 7777778999999999 999999999999999999999999999999 999999999999997
Q ss_pred HHHHhccccceeeecc-------CceEEEEEEEe----ceeeEEeccCccCC----------Ce-EEeCCCceEEEcCC
Q psy8861 270 IDIILNLKGVILKLYN-------RDYAILNLKKF----GKCVVLASDIELLS----------DI-ELVNPNHIIAHLSD 326 (550)
Q Consensus 270 ~~IilNLK~i~~~~~~-------~~~~~~~l~~~----Gp~~V~A~DI~~~~----------~v-eivnpd~~IatL~~ 326 (550)
|+++++.++ .+++.++|+++ ||++|||+||++++ .+ +++|||++||||.+
T Consensus 78 -------k~l~~~~~~~~~~~c~~~~v~l~L~v~c~~~g~~~Vta~Di~~~~~~~~~~~~~p~v~ei~npdi~IakL~~ 149 (318)
T 1twf_C 78 -------EQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRK 149 (318)
T ss_dssp -------GGSCCTTTSSSSSCCTTTEEEEEEEEECCSSSCEEEEGGGEEECSCCTTCSEEEECCCSTTSCCSEEEEECT
T ss_pred -------hheEEeeccccccCCCCceEEEEEEEEecCCCCeeEEhHhccccCccccccccCCCccccCCCCeEEEEECC
Confidence 788887653 57899999999 99999999999776 78 59999999999987
No 15
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.3e-26 Score=236.39 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=102.3
Q ss_pred CCeeEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECC---------cccccccccCccccHHH
Q psy8861 201 KPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISG---------ALHEYSSLEGVQEDIID 271 (550)
Q Consensus 201 ~p~~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~g---------v~hEfs~i~Gv~Edv~~ 271 (550)
.|+ |++.+.+++|++|.++ |+|.||||||||+|||++||+||+.|+|++ +.|||++|||+.||+.+
T Consensus 4 ~p~-I~i~~~~~~~~~F~l~----g~~~tiaNALRRiLLSeVPt~AI~~V~I~~NtSvl~DE~laHrlglIP~v~edv~e 78 (297)
T 3h0g_C 4 ETH-ITIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDE 78 (297)
T ss_dssp CCS-BCCCCBCSSEEEEEEC----SCCHHHHHHHHHHHHSSCCEEEEEEEEEEEECSSSCHHHHHHHHHHSCBCCTTCSS
T ss_pred CCe-EEEEEccCCEEEEEEE----CCChhHHHHHHHHHHHcCccceEEEEEEEeCCccccccceeeeeccCCcccccccc
Confidence 353 7777888999999999 999999999999999999999999999987 99999999999999988
Q ss_pred HHhccccceeeec-------cCceEEEEEEEec----eeeEEeccCccCCCe----EE----eCCCceEEEcCC
Q psy8861 272 IILNLKGVILKLY-------NRDYAILNLKKFG----KCVVLASDIELLSDI----EL----VNPNHIIAHLSD 326 (550)
Q Consensus 272 IilNLK~i~~~~~-------~~~~~~~~l~~~G----p~~V~A~DI~~~~~v----ei----vnpd~~IatL~~ 326 (550)
+ |+|.+.++.+ +.+++.++|+++| |+.|||+||+++++. .| +|||++||||.+
T Consensus 79 ~--~~~~l~~k~~c~~~~~~~~~~v~l~L~v~g~~~~~~~Vta~Dl~~~~~~~~~~pv~~~~~n~di~IakL~~ 150 (297)
T 3h0g_C 79 P--PPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRK 150 (297)
T ss_dssp C--SSSCCCCSSSCSSSSSCGGGSCEEEEEECCCCSSCEEEEGGGCBCCSCCSSCCBCCCSTTSCCSEEEEECS
T ss_pred c--ccceeEeccccccccCCCCceEEEEEEEEeccCCCceEEcccccccCcccccccccccCCCCCeEEEEECC
Confidence 3 3555555432 3468999999999 999999999977753 23 689999999977
No 16
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=99.88 E-value=1.7e-23 Score=176.73 Aligned_cols=74 Identities=66% Similarity=0.953 Sum_probs=69.7
Q ss_pred ccCCcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcccccccccc
Q psy8861 363 KVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYMRHRHGF 436 (550)
Q Consensus 363 ~~~~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lmrhrk~~ 436 (550)
..++++++||++|+|||||+||||+|||+||+||+++|++||++++|||+||++||+++|+++|++|++.-..|
T Consensus 5 ~~~~~l~~~I~~L~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~GL~~gm~l~~~ 78 (86)
T 3k4g_A 5 EFDPILLRPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLSLGMRLENW 78 (86)
T ss_dssp CCCGGGGSBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCSSCCEESB
T ss_pred chhHHHhCcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcCCCcCCCcccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999876555
No 17
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=99.87 E-value=3.3e-23 Score=172.51 Aligned_cols=69 Identities=35% Similarity=0.622 Sum_probs=64.9
Q ss_pred ccCCcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCccccc
Q psy8861 363 KVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYMR 431 (550)
Q Consensus 363 ~~~~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lmr 431 (550)
...++++++|++|+||+||+|||++|||+||+||+++|++||++++|||+||++||+++|+++|++|+.
T Consensus 9 ~~~~~l~~~Ie~L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~Gl~l~~ 77 (79)
T 3gfk_B 9 QKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRK 77 (79)
T ss_dssp SCCCGGGCBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTCCCC-
T ss_pred chHHHhcCcHHHhCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHcCCCCCC
Confidence 345678999999999999999999999999999999999999999999999999999999999999864
No 18
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=99.87 E-value=3.9e-23 Score=178.53 Aligned_cols=71 Identities=73% Similarity=1.055 Sum_probs=66.2
Q ss_pred ccCCcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCccccccc
Q psy8861 363 KVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYMRHR 433 (550)
Q Consensus 363 ~~~~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lmrhr 433 (550)
.....++++|++|+||||||||||++||+||+||+++|++||++++|||+||++||+++|+++|+.|++.-
T Consensus 17 ~~~~~l~~~Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~Gl~l~~~~ 87 (98)
T 1coo_A 17 EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 87 (98)
T ss_dssp -CCHHHHSBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCTTCCC
T ss_pred hHHHHhcCcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHHcCccccCCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999997654
No 19
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=99.86 E-value=1.8e-22 Score=166.04 Aligned_cols=66 Identities=36% Similarity=0.637 Sum_probs=62.5
Q ss_pred CcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCccccc
Q psy8861 366 PILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYMR 431 (550)
Q Consensus 366 ~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lmr 431 (550)
..+++|||+|+||+||+|||+++||+||+||+++|++||++++|||+||++||+++|+++|+.|+.
T Consensus 5 ~~l~~~Ie~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~gl~l~~ 70 (73)
T 1z3e_B 5 KVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRK 70 (73)
T ss_dssp HHHTCBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCCCC-
T ss_pred hhhcCcHHHhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 356799999999999999999999999999999999999999999999999999999999999864
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=99.75 E-value=2.5e-19 Score=171.16 Aligned_cols=81 Identities=23% Similarity=0.475 Sum_probs=75.8
Q ss_pred ccccchhhhhHhhhhhHhhhCCcHHHHHHHHHHhhccCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEE
Q psy8861 47 SRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLV 126 (550)
Q Consensus 47 ~k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~~~a~~~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~V 126 (550)
+|.|+||+++.|||+++++||++|+| +||+|||++|++.||+.||.+|+|||.||||.|
T Consensus 78 ~kl~~~g~~~~~kqkl~~~~gl~~~~---------------------~le~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~V 136 (181)
T 2xzm_D 78 RRMFKYGLLSEQERKLDYVLGLTIHK---------------------LMERRLQTRVFKLNLANSIHHSRVLIRQRHIKV 136 (181)
T ss_dssp HHHHHTTSSCTTCCSTHHHHSCCHHH---------------------HHTTBHHHHHHHTTCSSSTTHHHHHTTTTCCEE
T ss_pred HHHHHhccccchhhhHHHHhCcCcch---------------------hhccchhHHHHhccccCCHHHHHHHHHCCEEEE
Confidence 37899999999999999999999983 689999999999999999999999999999999
Q ss_pred CcEEeccCCcccCCCC--EEEEcc
Q psy8861 127 NKKIVNIASYKIKPGD--IISVRE 148 (550)
Q Consensus 127 Ng~~v~~ps~~vk~gD--iI~v~~ 148 (550)
||++|++|||.|++|| .|++..
T Consensus 137 Ng~~V~~Ps~~V~~~d~~~I~v~~ 160 (181)
T 2xzm_D 137 GKNLVNVPSFMVRTDSEKSIDFAS 160 (181)
T ss_dssp TTEECCCSCCBCCSTTSSCEECTT
T ss_pred CCEEECCCCcCCCCCCceEEEEeC
Confidence 9999999999999997 577644
No 21
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.70 E-value=1.4e-17 Score=158.73 Aligned_cols=97 Identities=29% Similarity=0.472 Sum_probs=85.6
Q ss_pred hhhHhhhhhHhhhCCc--------HHHHHHHHHHhhccCCCch-------HHHH------------------------HH
Q psy8861 54 YQFREKQKVKRMYGIL--------EKQFRRYFIEGARLKGKTG-------EIIL------------------------KL 94 (550)
Q Consensus 54 ~~L~~Kqkl~~~YG~~--------ekq~~~~~~~a~~~~g~~~-------~~ll------------------------~~ 94 (550)
.++.+++++...||+. ++++.+|-+.|.+..+.++ ..|+ ++
T Consensus 21 ~r~~~E~kl~~~YgL~nk~e~wk~~~~l~~~r~~Ar~L~~l~~~d~~~~~~~LL~kL~~~Gll~~~~~L~~vl~l~~~~~ 100 (180)
T 3j20_D 21 ERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDI 100 (180)
T ss_dssp HHHHHHHHHHHHHTCSCTHHHHHHHHHHHHHHHHHHHHHHSCTTSCTHHHHHHHHHHHHHTSSSSCCCSHHHHTCCHHHH
T ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHhccchHhh
Confidence 6899999999999999 7888888888876543332 2244 89
Q ss_pred HhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCC--CEEEEccCc
Q psy8861 95 LESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPG--DIISVREKA 150 (550)
Q Consensus 95 LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~g--DiI~v~~~~ 150 (550)
||+|||++|+++|||.||.+|+|||.||||.|||++|++|||.|.+| |.|+|.+.+
T Consensus 101 le~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~s 158 (180)
T 3j20_D 101 LERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTS 158 (180)
T ss_dssp HHTSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSCS
T ss_pred hhhhhhheeecCcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999 999997654
No 22
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.6e-16 Score=127.24 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=55.0
Q ss_pred HHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCC--CCEEEEccCch
Q psy8861 93 KLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKP--GDIISVREKAK 151 (550)
Q Consensus 93 ~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~--gDiI~v~~~~~ 151 (550)
++||+|||++|++.|||.||.+|+|||.||||+|||++|++|||.|++ +|.|++.+.+.
T Consensus 4 ~~l~~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~~~~ 64 (71)
T 2cqj_A 4 GSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSK 64 (71)
T ss_dssp SCCEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSS
T ss_pred HHHHHHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEECCce
Confidence 468999999999999999999999999999999999999999999998 89999876653
No 23
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=99.55 E-value=7.7e-16 Score=148.26 Aligned_cols=66 Identities=29% Similarity=0.446 Sum_probs=60.0
Q ss_pred CCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCC--CEEEEccCc
Q psy8861 85 GKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPG--DIISVREKA 150 (550)
Q Consensus 85 g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~g--DiI~v~~~~ 150 (550)
++++.++.++||+|||++||++|||.||.+|+|||.||||+|||++|++|||.|++| |.|++.+.+
T Consensus 95 ~v~~l~~~~~le~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~s 162 (197)
T 3u5c_J 95 YVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 162 (197)
T ss_dssp HHHHCCHHHHHTTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSSS
T ss_pred hhhcccHHHHHHHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCCC
Confidence 445677889999999999999999999999999999999999999999999999999 578886543
No 24
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.50 E-value=2.6e-17 Score=158.24 Aligned_cols=87 Identities=25% Similarity=0.372 Sum_probs=76.2
Q ss_pred hhHhhhCCcHHHHHHHHHHhhc-----cCCCchHHH-----------HHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcE
Q psy8861 61 KVKRMYGILEKQFRRYFIEGAR-----LKGKTGEII-----------LKLLESRFDNVVYRMGFSSTRSEARQLISHRAF 124 (550)
Q Consensus 61 kl~~~YG~~ekq~~~~~~~a~~-----~~g~~~~~l-----------l~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V 124 (550)
..+..|++.|+|+.++|..+.. ..|.++++. .++||+|||++||++|||.||.+|+|||.||||
T Consensus 57 ~Ar~L~~l~e~d~~r~~~~~~lL~kL~~~Gll~e~~~~Ld~vl~l~~~~~le~RLD~~L~r~G~a~SR~~ArqlI~~GhV 136 (195)
T 3iz6_C 57 NARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHI 136 (195)
T ss_dssp SSCHHHHHHHTCCCHHHHHHHHTCSSSTTSHHHHHHHTTCCEETTEECCCTTSCCCSSCCCCCCHHHHSCTTSHHHHHST
T ss_pred HHHHHHcCCccchHHHHHHHHHHHHHHHcCCCCccccCHHHHHhhhHHHHHHhhhhHHHHhccccCCHHHHHHHHHcCCE
Confidence 3456789999999898888765 347666544 689999999999999999999999999999999
Q ss_pred EECcEEeccCCcccCCCCEEEEc
Q psy8861 125 LVNKKIVNIASYKIKPGDIISVR 147 (550)
Q Consensus 125 ~VNg~~v~~ps~~vk~gDiI~v~ 147 (550)
+|||++|++|||.|++||.+.|.
T Consensus 137 ~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 137 RVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp TTSCCCCCCCCCCCSSSCSSSSC
T ss_pred EECCEEeCCCCcCcCCCCEEEEE
Confidence 99999999999999999997775
No 25
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.72 E-value=1.4e-09 Score=89.90 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=50.7
Q ss_pred hhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 97 SRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 97 ~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
+|||.+|...|++.||.+|++||.+|.|+|||+.+++|++.|.+||.|+|.+.
T Consensus 21 ~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~~ 73 (79)
T 1p9k_A 21 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 (79)
T ss_dssp CCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred chHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECCE
Confidence 79999999999999999999999999999999999999999999999999754
No 26
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.71 E-value=1.6e-08 Score=92.04 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=50.0
Q ss_pred hhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 96 ESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 96 E~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
.+|||.||+..+++.||..|+++|.+|+|+|||+.+ +||+.|++||+|+|....
T Consensus 8 ~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 (133)
T ss_dssp CCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETT
T ss_pred chhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCC
Confidence 379999999999999999999999999999999998 999999999999997544
No 27
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.56 E-value=9.1e-08 Score=97.60 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=65.4
Q ss_pred hhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECc-E-EeccCCcccCCCCEEEEccCc-----hhhHHHHhhhhccCCCCC
Q psy8861 96 ESRFDNVVYRMGFSSTRSEARQLISHRAFLVNK-K-IVNIASYKIKPGDIISVREKA-----KKQTRIANSLELSEHSTP 168 (550)
Q Consensus 96 E~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg-~-~v~~ps~~vk~gDiI~v~~~~-----~~~~~i~~~~~~~~~~~~ 168 (550)
.+|||.+|++.|++.||++|++||.+|+|+||| + ++++|++.|++||.|+|.+.. +.-.-+...+.... ...
T Consensus 6 ~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~~~~yvsrg~~Kl~~~l~~~~-~~~ 84 (291)
T 3hp7_A 6 KERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGEKLRYVSRGGLKLEKALAVFN-LSV 84 (291)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTCCCCSSSTTHHHHHHHHHHTT-CCC
T ss_pred hhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcccccccccchHHHHHHHHHhcC-CCc
Confidence 479999999999999999999999999999999 8 899999999999999997653 23233445555443 223
Q ss_pred CCcEEEecCccEEE
Q psy8861 169 FSWITVDAKKMEGV 182 (550)
Q Consensus 169 p~~l~vd~~~~~g~ 182 (550)
+...-+|...-+|.
T Consensus 85 ~g~~vLDiGcGTG~ 98 (291)
T 3hp7_A 85 EDMITIDIGASTGG 98 (291)
T ss_dssp TTCEEEEETCTTSH
T ss_pred cccEEEecCCCccH
Confidence 44555665444443
No 28
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.53 E-value=1.2e-08 Score=86.52 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=49.2
Q ss_pred hhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 97 SRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 97 ~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
+|||.+|...+++.|+.+|+++|.+|.|+|||+.+ +|++.|++||.|+|....
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~ 53 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLK 53 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSS
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCC
Confidence 59999999888889999999999999999999998 899999999999997544
No 29
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.20 E-value=4.5e-07 Score=89.82 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=43.8
Q ss_pred HcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 105 RMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 105 r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
|+|||.|+.+|||++.||+|+|||++++.|+|.|..+|+|+|.+..
T Consensus 52 rLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~kt~ 97 (243)
T 3j20_E 52 YLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETG 97 (243)
T ss_dssp TSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETTTT
T ss_pred hhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecccC
Confidence 5899999999999999999999999999999999999999998744
No 30
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=97.95 E-value=3.7e-06 Score=81.76 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=41.1
Q ss_pred HcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEE
Q psy8861 105 RMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISV 146 (550)
Q Consensus 105 r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v 146 (550)
|+|||.|+.+|||++.||+|+|||++++.|+|.+..+|+|++
T Consensus 17 rLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 17 YLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp HHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred hhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 579999999999999999999999999999999999999999
No 31
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=97.94 E-value=5.9e-06 Score=81.61 Aligned_cols=52 Identities=29% Similarity=0.323 Sum_probs=48.4
Q ss_pred hhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 96 ESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 96 E~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
++|||.+|...+ ..||.+|+++|..|.|+|||+.+++|++.|++||.|++.+
T Consensus 2 ~~RLd~~L~~~~-~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 53 (243)
T 1vio_A 2 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 53 (243)
T ss_dssp CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred CccHHHHHHHcC-CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec
Confidence 579999999886 7799999999999999999999999999999999999964
No 32
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=97.91 E-value=8e-06 Score=83.21 Aligned_cols=52 Identities=25% Similarity=0.476 Sum_probs=48.3
Q ss_pred hhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 96 ESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 96 E~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
.+|||.+|...|++ ||.+|+++|.+|.|+|||+++ .+++.|.+||.|+|...
T Consensus 6 g~RLdk~La~~g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~ 57 (290)
T 3dh3_A 6 SVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQ 57 (290)
T ss_dssp CEEHHHHHHTTTSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTE
T ss_pred chHHHHHHHhCCCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccc
Confidence 47999999999876 999999999999999999999 99999999999999753
No 33
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=97.90 E-value=8.1e-06 Score=80.06 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=47.7
Q ss_pred hhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 97 SRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 97 ~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
+|||.+|...+ ..||.+|+++|.+|.|+|||+.+++|++.|++||.|++.+
T Consensus 4 ~RLd~~L~~~~-~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 54 (234)
T 1ksk_A 4 MRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG 54 (234)
T ss_dssp EEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT
T ss_pred ccHHHHHHHcC-CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC
Confidence 69999998875 7799999999999999999999988999999999999974
No 34
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=97.52 E-value=1.3e-05 Score=82.50 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=0.0
Q ss_pred hhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 96 ESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 96 E~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
.+|||.+|...+...||.+|+++|.+|.|+|||+.+.+|++.|++||+|+|..
T Consensus 16 g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 68 (325)
T 1v9f_A 16 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68 (325)
T ss_dssp -----------------------------------------------------
T ss_pred CchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEec
Confidence 37999999887768899999999999999999999889999999999999964
No 35
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=96.88 E-value=0.0097 Score=50.59 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=61.5
Q ss_pred eEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHHhccccceeee
Q psy8861 204 IIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKL 283 (550)
Q Consensus 204 ~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~IilNLK~i~~~~ 283 (550)
++++.+..++++.|.+. |-.+||||+||-.|+.. |+.-.-+-+|+...
T Consensus 2 eikvi~k~~n~~~f~i~----~EDHTLgN~Lr~~L~~~-p~V~fagY~vpHPl--------------------------- 49 (92)
T 2pa8_L 2 EIRILKSESNYLELEIE----GEDHTLGNLIAGTLRRI-SGVSFASYYQPHPL--------------------------- 49 (92)
T ss_dssp EEEEEEEETTEEEEEEE----TCCHHHHHHHHHHHHTS-TTEEEEEEECSSTT---------------------------
T ss_pred ceEEEecCCCeEEEEEe----cCchhHHHHHHHHHhcC-CCeeEEEeecCCCC---------------------------
Confidence 37788889999999999 99999999999998874 77666666654332
Q ss_pred ccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcCChHHHHHHHHHHHHHHhhhhhc
Q psy8861 284 YNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAA 347 (550)
Q Consensus 284 ~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~~P~~Al~~Aa~iL~~~~~~f~~ 347 (550)
.....+++...|. ..|.+||.+|++-|++.++.|.+
T Consensus 50 --~~~~~lrIqT~~~--------------------------~~p~~al~~a~~~l~~~~~~~~~ 85 (92)
T 2pa8_L 50 --SDKIIVKILTDGS--------------------------ITPKDALLKAIENIRGMTSHYID 85 (92)
T ss_dssp --SCCEEEEEEECSS--------------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCceEEEEEECCC--------------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 1112333333321 34999999999999998887754
No 36
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=95.94 E-value=0.081 Score=47.06 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=59.0
Q ss_pred EEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHHhccccceeeec
Q psy8861 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKLY 284 (550)
Q Consensus 205 i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~IilNLK~i~~~~~ 284 (550)
+++....++.+.|.|. |-.+||||+||-.|+.. |+.-.-+-+|+.-.-
T Consensus 21 ~~~~~k~~n~~~f~i~----~EDHTLgNlLr~~Llk~-p~V~fAgY~vpHPl~--------------------------- 68 (120)
T 1twf_K 21 IDPDTKAPNAVVITFE----KEDHTLGNLIRAELLND-RKVLFAAYKVEHPFF--------------------------- 68 (120)
T ss_dssp EEECSSSTTEEEEEEE----SCCHHHHHHHHHHHTTC-TTEEEEEEECSCTTS---------------------------
T ss_pred EEeccCCCCeEEEEEe----CCCchHHHHHHHHHhhC-CCeeEEeeecCCCCC---------------------------
Confidence 4555567899999999 99999999999998874 776666665543210
Q ss_pred cCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcCChHHHHHHHHHHHHHHhhhhhc
Q psy8861 285 NRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAA 347 (550)
Q Consensus 285 ~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~~P~~Al~~Aa~iL~~~~~~f~~ 347 (550)
....+++...|- ..|.+||.+|++-|++.++.|.+
T Consensus 69 --~~~~lrIqT~~~--------------------------~~p~eaL~~a~~~L~~~~~~l~~ 103 (120)
T 1twf_K 69 --ARFKLRIQTTEG--------------------------YDPKDALKNACNSIINKLGALKT 103 (120)
T ss_dssp --CEEEEEEEECTT--------------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CccEEEEEECCC--------------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 112333333321 25999999999999998887754
No 37
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=95.88 E-value=0.041 Score=48.64 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=37.4
Q ss_pred eEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEEC
Q psy8861 204 IIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253 (550)
Q Consensus 204 ~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~ 253 (550)
.+++.+..++++.|.+. |-.+||||+||-.|+.. |+.-.-+-+|+
T Consensus 12 eiki~~k~~n~~~f~i~----~EDHTLgNlLr~~Llkd-p~V~fAgY~vp 56 (115)
T 1xpp_A 12 SLRVISKEKNSITVEMI----NYDNTLLRTLVEEILKD-DQVDEARYYIK 56 (115)
T ss_dssp EEEEEEECSSEEEEEEE----SCCHHHHHHHHHHHTTC-TTEEEEEEECS
T ss_pred EEEEEcCCCCEEEEEEe----CCCchhHHHHHHHHhcC-CCeEEEEeecC
Confidence 57788889999999999 99999999999998776 66666565554
No 38
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=95.71 E-value=0.004 Score=55.04 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=51.2
Q ss_pred ccccccC---CchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhc
Q psy8861 370 RPVDDLE---LTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASR 425 (550)
Q Consensus 370 ~~I~~L~---LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~ 425 (550)
.+|++|+ ++....+-|+.+|++||.+|...+.++|.+++++|....+.|.+.-.++
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3677765 9999999999999999999999999999999999999999999988764
No 39
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=94.92 E-value=0.06 Score=48.13 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=28.1
Q ss_pred EEEE--eeCCcEEEEEEeeCccchhhhHHHHHHHHHhhc
Q psy8861 205 IDVK--TLGSNHAKVIMEPFERGYGYTLGNALRRVLLSS 241 (550)
Q Consensus 205 i~v~--~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLss 241 (550)
|++. ...++++.|.|. |-.+||||+||-.|+..
T Consensus 18 v~~~~dtk~~n~~~f~i~----~EDHTLgNlLr~~Llk~ 52 (123)
T 3h0g_K 18 VTYELDSKSPNAAVVTLE----KEDHTLANMLANQLLSD 52 (123)
T ss_dssp CCEEECSSSTTEEEEEEE----SCCSSHHHHHHHTGGGS
T ss_pred eEEecCCCCCceEEEEEe----CCCcchHHHHHHHHhcC
Confidence 4444 456899999999 99999999999999876
No 40
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.77 E-value=0.023 Score=45.84 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 376 ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 376 ~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+++.....-|+.+||+|+.||...+.+||..++++++...+.|...-.+
T Consensus 14 Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 14 GVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp TCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999888888766543
No 41
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=94.22 E-value=0.025 Score=45.74 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=50.0
Q ss_pred ccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhc
Q psy8861 370 RPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASR 425 (550)
Q Consensus 370 ~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~ 425 (550)
..++.|+.+-...+-|..+|++|+.++...+.+||+.|++|..--.++|++.-.++
T Consensus 7 ~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 7 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 45667888889999999999999999999999999999999999999998876543
No 42
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=93.76 E-value=0.011 Score=62.95 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEE
Q psy8861 97 SRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDII 144 (550)
Q Consensus 97 ~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI 144 (550)
..|..+|..+|+++|..+||.+|..|-|.|||.+|+.+.+.+.++|.+
T Consensus 353 i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 353 TNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp ------------------------------------------------
T ss_pred ccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 368888999999999999999999999999999999999999988765
No 43
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=93.33 E-value=0.044 Score=58.67 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=40.6
Q ss_pred hhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCC
Q psy8861 98 RFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGD 142 (550)
Q Consensus 98 RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gD 142 (550)
.+=.+|+.+|+++|..+||.+|..|-|.|||.+|+.|.+.+.++|
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 401 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSD 401 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGG
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhh
Confidence 456667899999999999999999999999999999999998754
No 44
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.16 E-value=0.086 Score=56.38 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=42.3
Q ss_pred hhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEE
Q psy8861 98 RFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISV 146 (550)
Q Consensus 98 RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v 146 (550)
.+=.++..+|+++|..+||.+|..|-|.|||.+|+.|.+.+..++.+.+
T Consensus 370 ~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~~~~l 418 (432)
T 1h3f_A 370 WVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRIL 418 (432)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEE
T ss_pred cHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCCcEEE
Confidence 3556678999999999999999999999999999999999987763333
No 45
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=91.35 E-value=0.15 Score=42.45 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=47.1
Q ss_pred ccc-cCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 372 VDD-LELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 372 I~~-L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++. ..||-=-.+-|++.||.|+.|++..++.||+++=+++-+.+.+|+..|.+
T Consensus 6 ~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA 59 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444 37777778999999999999999999999999999999999999988864
No 46
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=90.94 E-value=0.043 Score=58.53 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEE
Q psy8861 98 RFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDII 144 (550)
Q Consensus 98 RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI 144 (550)
.+=.+|+.+|+++|..+||.+|..|-|.|||.+|+.+.+.+.++|.+
T Consensus 353 ~~~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~ 399 (419)
T 2ts1_A 353 PLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 399 (419)
T ss_dssp -----------------------------------------------
T ss_pred cHHHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhcc
Confidence 45556779999999999999999999999999999999999887653
No 47
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.72 E-value=0.19 Score=53.03 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=48.7
Q ss_pred ccccccC---CchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 370 RPVDDLE---LTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 370 ~~I~~L~---LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
.+|+.|+ ++.+....|++|||+|+.|++..+..||.++.+++....++|.+...+
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~ 138 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 138 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5676665 999999999999999999999999999999999999888888776654
No 48
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.64 E-value=0.19 Score=50.56 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=47.3
Q ss_pred cccccC-CchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 371 PVDDLE-LTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 371 ~I~~L~-LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+|++|+ ++....+-|+++||+|+.||+..+..||.++.++..+..+++.++..+
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 577776 999999999999999999999999999999999998888777776543
No 49
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=90.26 E-value=0.17 Score=50.58 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=42.6
Q ss_pred HcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 105 RMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 105 r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
++++|.|..+|+..+++|.|+|||++.+.+.|.+-.=|+|+|....
T Consensus 51 ~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~ 96 (261)
T 3u5c_E 51 RLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATN 96 (261)
T ss_dssp TTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETTTT
T ss_pred hhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcCCC
Confidence 5789999999999999999999999999999999889999996544
No 50
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=89.80 E-value=0.16 Score=47.57 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=29.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHcCcEEECcEEecc
Q psy8861 101 NVVYRMGFSSTRSEARQLISHRAFLVNKKIVNI 133 (550)
Q Consensus 101 ~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ 133 (550)
.+|+.+|+++|..+||.+|..|-|.|||.++..
T Consensus 54 dlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~~ 86 (164)
T 2ktl_A 54 KVLWSAGLVASKSEGQRIINNNGAYVGSRPGVK 86 (164)
T ss_dssp HHHHHHTSCSTHHHHHHHHHHTCEEEEECCSCC
T ss_pred HHHHHhCcccCHHHHHHHHHhCCEEECCEeccc
Confidence 345789999999999999999999999988744
No 51
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.46 E-value=0.17 Score=50.58 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=42.2
Q ss_pred HcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 105 RMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 105 r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
++++|.|..+|+..+++|.|+|||++.+.+.|.+-.=|+|+|....
T Consensus 51 ~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~ 96 (265)
T 3iz6_D 51 RLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTG 96 (265)
T ss_dssp HHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSC
T ss_pred hhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCC
Confidence 5789999999999999999999999999999999888999996543
No 52
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=89.37 E-value=0.31 Score=48.66 Aligned_cols=46 Identities=11% Similarity=0.311 Sum_probs=42.0
Q ss_pred HcCCCCCHHHHHHHHHc--CcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 105 RMGFSSTRSEARQLISH--RAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 105 r~gfa~Sr~~ArqlI~h--G~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
++++|.|..+|+..+++ |.|+|||++.+.+.|.+-.=|+|+|....
T Consensus 51 ~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~ 98 (260)
T 2xzm_W 51 RLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 98 (260)
T ss_dssp TTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGGGT
T ss_pred hhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcCCC
Confidence 47899999999999999 99999999999999999999999996533
No 53
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.21 E-value=0.12 Score=52.50 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred ccccccC-CchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 370 RPVDDLE-LTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 370 ~~I~~L~-LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
.+|++|. |+....+-|+++||+|+.|++..+..+|.++.++.....+++.+...
T Consensus 12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~ 66 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEAR 66 (324)
T ss_dssp -------------------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3788887 99999999999999999999999999999999998877777766553
No 54
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.28 E-value=0.46 Score=48.83 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=44.9
Q ss_pred ccccccC-CchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHH
Q psy8861 370 RPVDDLE-LTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422 (550)
Q Consensus 370 ~~I~~L~-LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L 422 (550)
.+|++|. ++....+-|+++||+|+.+++..+..+|.++.+++....+.|.+..
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~ 88 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAA 88 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHH
Confidence 4688885 9999999999999999999999999999999999765555554443
No 55
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.08 E-value=0.14 Score=52.38 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred ccccccC---CchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 370 RPVDDLE---LTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 370 ~~I~~L~---LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
.+|+.|+ |+....+-|+++||+|+.|++..+..+|.++.++.....+++.+...
T Consensus 25 ~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 25 QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAAN 81 (343)
T ss_dssp ---------------------------------------------------------
T ss_pred CcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3788887 99999999999999999999999999999999998876666665543
No 56
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=80.52 E-value=0.97 Score=50.10 Aligned_cols=70 Identities=17% Similarity=0.306 Sum_probs=54.4
Q ss_pred CCchhhhhhhhccC-ccchHHHhhcCHHHhhccCccccccHHHHHHHHHh-cCccccc--cccccccCCCChHH
Q psy8861 376 ELTVRSANCLKAEN-IHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS-RGKYYMR--HRHGFRKLNRTSSH 445 (550)
Q Consensus 376 ~LsvRs~NcLk~a~-I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~-~gl~lmr--hrk~~rklgr~~~h 445 (550)
+|+-.+..-|-.+| |+++.||..++.+||+++++||+||.+-+.+.+++ ....|.+ ..-+.+..|.+++.
T Consensus 453 GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~ 526 (586)
T 4glx_A 453 GMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAA 526 (586)
T ss_dssp TCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHH
T ss_pred CcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHH
Confidence 56667777788888 69999999999999999999999999999999975 4555544 23345666665553
No 57
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=75.42 E-value=0.9 Score=43.92 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=25.8
Q ss_pred cccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhh
Q psy8861 368 LLRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELL 405 (550)
Q Consensus 368 l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~ 405 (550)
-.+||++| ++.-++..-|++.||+|++||..++.++|.
T Consensus 182 ~~lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 182 NELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELE 220 (221)
T ss_dssp HTCBGGGSTTCCHHHHHHHHHTTCCBTTC----------
T ss_pred HhCCcccccCCCHHHHHHHHHcCCCcHHHHHCCCHHHhh
Confidence 34799999 899999999999999999999999988764
No 58
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=73.97 E-value=1.9 Score=44.18 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=44.6
Q ss_pred ccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 369 LRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 369 ~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
.+||++| ++.-++..-|++.||+|++||..++.++|.+ -||......+.+.+.
T Consensus 178 ~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~--~fG~~~g~~l~~~a~ 231 (354)
T 3bq0_A 178 ELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEK--ITGKAKALYLLKLAQ 231 (354)
T ss_dssp HCBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHH--HHCHHHHHHHHHHHT
T ss_pred hCCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHH--HHCHHHHHHHHHHhC
Confidence 4799999 8999999999999999999999999998864 588765666665553
No 59
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=72.38 E-value=3.2 Score=34.02 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=36.1
Q ss_pred hhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 380 RSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 380 Rs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++...|+.- .++.++...+.++|.+++++|.+..+.|.+.+++
T Consensus 31 ~A~~Ll~~f--gsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 31 DSQTLLTTF--GSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHHHHHHT--CBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHC--CCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 455555554 4789999999999999999999999999999974
No 60
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=70.81 E-value=2 Score=44.39 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=44.4
Q ss_pred cccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHH
Q psy8861 368 LLRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422 (550)
Q Consensus 368 l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L 422 (550)
-.+||++| ++.-++..-|++.||+|++||..++.+.|. +-||.+....+.+.+
T Consensus 177 ~~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~--~~fG~~~g~~l~~~a 230 (362)
T 4f4y_A 177 NELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELE--KITGKAKALYLLKLA 230 (362)
T ss_dssp HTCBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHH--HHHCHHHHHHHHHHH
T ss_pred HhCChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHH--HHhChHHHHHHHHHh
Confidence 34799999 899999999999999999999999998876 468876666666544
No 61
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=70.75 E-value=3.3 Score=33.09 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=35.3
Q ss_pred hhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 379 VRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 379 vRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
.++...++.- .++.+|...+.+||.+++++|.+..+.|.+.+.
T Consensus 35 ~~A~~Ll~~f--gsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 35 KRRQMLLKYM--GGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp SHHHHHHHHH--SCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 3555656553 479999999999999999999999999988764
No 62
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=70.44 E-value=3.3 Score=34.13 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=35.4
Q ss_pred hhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 380 RSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 380 Rs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++...|+.- .++.+|...+.+||.+++++|.+..+.|.+.+.+
T Consensus 44 ~A~~Ll~~f--gs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 44 DSQTLLTTF--GSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp HHHHHHHHH--SSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HHHHHHHHC--CCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 455555543 3789999999999999999999999999998853
No 63
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=70.23 E-value=2.5 Score=43.21 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=43.8
Q ss_pred ccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHH
Q psy8861 369 LRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422 (550)
Q Consensus 369 ~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L 422 (550)
.+||++| ++.-++..-|++.||+|++||..++.++|.+ -||......+.+.+
T Consensus 177 ~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~--~fG~~~g~~l~~~a 229 (352)
T 1jx4_A 177 ELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKG--MIGEAKAKYLISLA 229 (352)
T ss_dssp HSBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHH--HHCHHHHHHHHHHH
T ss_pred hCCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHH--hcChhHHHHHHHHh
Confidence 4799999 6899999999999999999999999999864 58876566666555
No 64
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=67.31 E-value=1.1 Score=44.16 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 376 ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 376 ~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++.......|-.+|+.++.+|...+.++|.++++||++..+.|.+.|..
T Consensus 22 GIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 22 GVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp -------------------------------------------------
T ss_pred CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4544555555555999999999999999999999999999999888864
No 65
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=64.16 E-value=4.4 Score=41.45 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=41.9
Q ss_pred cccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHH
Q psy8861 368 LLRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEI 421 (550)
Q Consensus 368 l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~ 421 (550)
-.+||++| ++.-++..-|++.||+|++||..++.+.|.+ -||.+.-..+.+.
T Consensus 176 ~~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~--~fG~~~g~~l~~~ 228 (356)
T 4dez_A 176 GDRPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTT--AFGPSTGLWLLLL 228 (356)
T ss_dssp TTSCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHH--HHCHHHHHHHHHH
T ss_pred hcCcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHH--HhCChHHHHHHHH
Confidence 34799998 5899999999999999999999999999864 5786554444443
No 66
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=60.16 E-value=6.1 Score=30.66 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=35.7
Q ss_pred hhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 380 RSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 380 Rs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++...|.. ..++.+|...+.++|.+++++|.+..+.|.+.+++
T Consensus 26 ~a~~Ll~~--fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 26 LARRLLKH--FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHHHHHH--HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHH--cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 45555553 45689999999999999999999999999988864
No 67
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=59.63 E-value=15 Score=28.93 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.0
Q ss_pred HcCcEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 120 SHRAFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 120 ~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
.+-.|.|||+.|..+++.+++||.|.|-+.
T Consensus 41 ~~~~vavN~~~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 41 GVCAIALNDHLIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp TTCEEEESSSEECCTTCCCCTTCEEEEECC
T ss_pred hccEEEECCEEcCCCCcCCCCCCEEEEECC
Confidence 345689999997789999999999998553
No 68
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=59.47 E-value=5.9 Score=44.55 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=48.2
Q ss_pred CCchhhhhhhhcc-CccchHHHhhcCHHHhhccCccccccHHHHHHHHHhc-Cccccccc--cccccCCCC
Q psy8861 376 ELTVRSANCLKAE-NIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASR-GKYYMRHR--HGFRKLNRT 442 (550)
Q Consensus 376 ~LsvRs~NcLk~a-~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~-gl~lmrhr--k~~rklgr~ 442 (550)
+|.-.+...|-.+ .|+++.||..++.++|..+++||+||.+-|.+.+++. ...|.+-- -+.+..|..
T Consensus 453 GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~ 523 (671)
T 2owo_A 453 GMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEA 523 (671)
T ss_dssp TCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHH
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHH
Confidence 3444555555555 4899999999999999999999999999999998753 33333322 244556653
No 69
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=58.25 E-value=5.1 Score=43.48 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=44.9
Q ss_pred ccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcc
Q psy8861 369 LRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKY 428 (550)
Q Consensus 369 ~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~ 428 (550)
.+||++| ++.-++..-|++.||+|++||..++.++|.+ -||.+....+.+.. .|+.
T Consensus 314 ~LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~--~fG~~~g~~L~~~a--~GiD 370 (504)
T 3gqc_A 314 GQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQK--EFGPKTGQMLYRFC--RGLD 370 (504)
T ss_dssp HSBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHH--HHCHHHHHHHHHHT--TTCC
T ss_pred cCChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHH--hhChhHHHHHHHHh--cCCC
Confidence 4899999 8999999999999999999999999998864 58876555555332 4554
No 70
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=58.12 E-value=6.8 Score=44.06 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCchhhhhhhhcc-CccchHHHhhcCHHHhhccCccccccHHHHHHHHHhc-Ccccccccc--ccccCCC
Q psy8861 376 ELTVRSANCLKAE-NIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASR-GKYYMRHRH--GFRKLNR 441 (550)
Q Consensus 376 ~LsvRs~NcLk~a-~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~-gl~lmrhrk--~~rklgr 441 (550)
+|.-.+..-|-.+ +|+++.||..++.++|..+++||+||.+.|.+.+++. ...|++--. +.+..|.
T Consensus 448 GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~ 517 (667)
T 1dgs_A 448 GLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGE 517 (667)
T ss_dssp TCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCH
T ss_pred cCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccH
Confidence 3444555555444 6899999999999999999999999999999998753 344444322 3344554
No 71
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=56.75 E-value=7.1 Score=43.43 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=40.4
Q ss_pred chhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCc
Q psy8861 378 TVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGK 427 (550)
Q Consensus 378 svRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl 427 (550)
.-.....|.++||.|+.||...+.+++..++++|++-++++...+.+++.
T Consensus 655 ~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 655 GRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp CHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcccccc
Confidence 33334557799999999999999999999999999999999988876554
No 72
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=55.88 E-value=19 Score=28.29 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.1
Q ss_pred cEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
.|.|||+.+. ++..++.||.|.|-+.
T Consensus 52 ~v~vN~~~v~-~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 52 LAAVNQTLVS-FDHPLTDGDEVAFFPP 77 (81)
T ss_dssp EEEETTEECC-TTCBCCTTCEEEEECC
T ss_pred EEEECCEECC-CCCCCCCCCEEEEeCC
Confidence 4889999995 7899999999988543
No 73
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=54.57 E-value=6.9 Score=41.34 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=43.0
Q ss_pred ccccccc-CCchhhhhhhhc--cCccchHHHhhc-CHHHhhccCccccccHHHHHHHH
Q psy8861 369 LRPVDDL-ELTVRSANCLKA--ENIHCIGDLIQR-SENELLRTPNLGRKSLNEIKEIL 422 (550)
Q Consensus 369 ~~~I~~L-~LsvRs~NcLk~--a~I~tv~dL~~~-s~~dL~~~~n~G~kSl~Ei~~~L 422 (550)
.+||++| ++.-++..-|.+ .||+|++||..+ +.++|.+ -||.+....+.+.+
T Consensus 240 ~lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~--~fG~~~g~~l~~~a 295 (434)
T 2aq4_A 240 SFKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKA--SVGSKLGMKIHLAL 295 (434)
T ss_dssp TCCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHH--HHCSSHHHHHHHHT
T ss_pred cCCcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHH--HhCHHHHHHHHHHh
Confidence 4899999 899999999999 999999999999 9888864 47876666555443
No 74
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=51.27 E-value=7.9 Score=40.86 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=39.7
Q ss_pred cc-cccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHH
Q psy8861 370 RP-VDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420 (550)
Q Consensus 370 ~~-I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~ 420 (550)
+| |++| ++.-++..-|++.||+|++||..++.+.|. +-||.+.-..+.+
T Consensus 233 Lppv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~--~~fG~~~g~~L~~ 283 (420)
T 3osn_A 233 LNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILE--KELGISVAQRIQK 283 (420)
T ss_dssp CSSGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHH--HHHHHHHHHHHHH
T ss_pred CccHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHH--HHhCchHHHHHHH
Confidence 54 9997 899999999999999999999999998886 4577554444443
No 75
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=50.15 E-value=7.7 Score=41.07 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=41.8
Q ss_pred ccccccc-CCchhhhhh-hhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcc
Q psy8861 369 LRPVDDL-ELTVRSANC-LKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKY 428 (550)
Q Consensus 369 ~~~I~~L-~LsvRs~Nc-Lk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~ 428 (550)
.+||++| ++.-++..- |.+.||+|++||..++.++|.+ -||.+...++.+.+ .|+.
T Consensus 252 ~lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~--~fG~~~g~~L~~~a--~G~d 309 (435)
T 4ecq_A 252 QMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS--HFGEKNGSWLYAMC--RGIE 309 (435)
T ss_dssp TCBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHH--HHCHHHHHHHHHHT--TTCC
T ss_pred hCCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHH--HhCccHHHHHHHHh--hCCC
Confidence 4789998 577776555 8999999999999999999865 48865555555333 4554
No 76
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ...
Probab=48.89 E-value=4.9 Score=39.60 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=36.8
Q ss_pred cccceeee-ccC-ceEEEEEEEece---eeEEeccCccCCCeEEeC-CCceEEEcCChH
Q psy8861 276 LKGVILKL-YNR-DYAILNLKKFGK---CVVLASDIELLSDIELVN-PNHIIAHLSDNE 328 (550)
Q Consensus 276 LK~i~~~~-~~~-~~~~~~l~~~Gp---~~V~A~DI~~~~~veivn-pd~~IatL~~P~ 328 (550)
+..|.++. ... =|-.+.++++|= ..++.+||.+|+++++++ ||..||++..|.
T Consensus 117 ~~eveV~~~lP~~IPe~IeVDVs~LeiGdsI~v~DL~LPeGv~l~~d~d~vVvsV~~p~ 175 (237)
T 2zjr_S 117 VHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR 175 (237)
T ss_dssp CSEEEEECCCTTCCCSCCEEECTTCCSSCEEETTTSCCSTTCCCCSCTTCEEEEEECCC
T ss_pred EeEEEEEEeCHHHCCccEEEEcccCCCCCEEEeeeccCCCCcEEcCCCCcEEEEEEcCC
Confidence 34455555 322 244555555543 379999999999999986 899999997754
No 77
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=46.68 E-value=10 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.6
Q ss_pred EEECcEEeccC---CcccCCCCEEEEcc
Q psy8861 124 FLVNKKIVNIA---SYKIKPGDIISVRE 148 (550)
Q Consensus 124 V~VNg~~v~~p---s~~vk~gDiI~v~~ 148 (550)
|-|||..|.+. ++.++.||.|+|-.
T Consensus 33 V~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 33 VALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred EEECCEECChHHcCcccCCCCCEEEEEc
Confidence 78999999876 67999999999843
No 78
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=45.63 E-value=15 Score=28.71 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.5
Q ss_pred cEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
.|.|||+.++ ++..++.||.|.|-+
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEEEC
T ss_pred EEEECCEECC-CCCCcCCCCEEEEEC
Confidence 5899999996 578999999999854
No 79
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=45.27 E-value=8.7 Score=42.17 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=35.2
Q ss_pred hhhhhhhhccCccchHHHhhc-CHHHhhccCccccccHHHHHHHHHh
Q psy8861 379 VRSANCLKAENIHCIGDLIQR-SENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 379 vRs~NcLk~a~I~tv~dL~~~-s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
.++...+. +||.|+.||... ....|.++++||+|+.+.|...|+-
T Consensus 108 k~A~~i~~-~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~ 153 (578)
T 2w9m_A 108 KKIRSLWL-AGIDSLERLREAAESGELAGLKGFGAKSAATILENVVF 153 (578)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHH
Confidence 34445454 499999999975 4458889999999999999877753
No 80
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=44.56 E-value=15 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.3
Q ss_pred cEEECcEEecc---CCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNI---ASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~---ps~~vk~gDiI~v~~ 148 (550)
.|.|||+.+.. +++.++.||.|.|-+
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 48899999975 789999999998854
No 81
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=44.50 E-value=13 Score=30.02 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.4
Q ss_pred cEEECcEEecc---CCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNI---ASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~---ps~~vk~gDiI~v~~ 148 (550)
.|.|||+.+.. +++.++.||.|.|-+
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 48999999974 789999999999854
No 82
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=44.05 E-value=19 Score=36.30 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCCCCcc-c-----cCccccccCCcccccccccC-CchhhhhhhhccCccchHHHhhc
Q psy8861 327 NEEAIRQSARVLVDQLNVFAALENTPVKK-E-----LDSSLEKVDPILLRPVDDLE-LTVRSANCLKAENIHCIGDLIQR 399 (550)
Q Consensus 327 P~~Al~~Aa~iL~~~~~~f~~~~~~~~~~-~-----~~~~~~~~~~~l~~~I~~L~-LsvRs~NcLk~a~I~tv~dL~~~ 399 (550)
-...+..|.+|+...+.+........... . .... .-+ -+.|+-+|. ++.-...-|.++||.|+.||..+
T Consensus 112 ~~~V~~~a~rLl~al~di~~~~g~~~~~~~l~L~q~i~q~---~w~-~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~ 187 (328)
T 3im1_A 112 LKDILEKVVPLINVVVDILSANGYLNATTAMDLAQMLIQG---VWD-VDNPLRQIPHFNNKILEKCKEINVETVYDIMAL 187 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHT---SCT-TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhh---cCC-CCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcC
Confidence 44567778888887777765543222110 0 0000 000 011232332 33233344778999999999999
Q ss_pred CHHHhhccCccccccHHHHHHHHHhc
Q psy8861 400 SENELLRTPNLGRKSLNEIKEILASR 425 (550)
Q Consensus 400 s~~dL~~~~n~G~kSl~Ei~~~L~~~ 425 (550)
+.+++..+-+++..-.++|.+.++.+
T Consensus 188 ~~~e~~~ll~~~~~~~~~v~~~~~~~ 213 (328)
T 3im1_A 188 EDEERDEILTLTDSQLAQVAAFVNNY 213 (328)
T ss_dssp CHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_pred CHHHHHhHhCCCHHHHHHHHHHHHhC
Confidence 99999998899888889999999876
No 83
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=44.04 E-value=11 Score=36.04 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=36.3
Q ss_pred ccceeeeccC-ceEEEEEEEece---eeEEeccCccCCCeEEeC-CCceEEEcCChH
Q psy8861 277 KGVILKLYNR-DYAILNLKKFGK---CVVLASDIELLSDIELVN-PNHIIAHLSDNE 328 (550)
Q Consensus 277 K~i~~~~~~~-~~~~~~l~~~Gp---~~V~A~DI~~~~~veivn-pd~~IatL~~P~ 328 (550)
..|.++.... =|-.+.++++|= ..++.+||.+|+++++++ ||..||++..|.
T Consensus 122 ~~v~V~~~p~~IPe~I~VDvs~L~iGdsi~v~Dl~lP~gv~~~~d~d~~V~~V~~~~ 178 (206)
T 1feu_A 122 RDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPE 178 (206)
T ss_dssp SEEEEEECGGGCCSCEEEECTTCCTTEEEEGGGSCCCTTCEESSCTTCEEEEEECSS
T ss_pred eEEEEEEcHHHCCccEEEEcccCCCCCEEEEeeccCCCCcEEcCCCCcEEEEEeCCC
Confidence 3444444332 244455555543 379999999999999986 799999998765
No 84
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=43.21 E-value=20 Score=27.43 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.3
Q ss_pred cEEECcEEeccC---CcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIA---SYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~p---s~~vk~gDiI~v~~ 148 (550)
.|.|||..+... ++.++.||.|+|-+
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 388999999763 57899999998854
No 85
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=42.38 E-value=19 Score=29.12 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.3
Q ss_pred cEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
.|.|||+.+. +++.|++||.|.|-+.
T Consensus 60 ~v~VN~~~v~-~~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 60 NVLRNGEAAA-LGEATAAGDELALFPP 85 (89)
T ss_dssp EEEETTEECC-TTSBCCTTCEEEEECC
T ss_pred EEEECCEECC-CCcccCCCCEEEEECC
Confidence 5899999996 6899999999988553
No 86
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=42.31 E-value=11 Score=32.02 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=23.4
Q ss_pred CcEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 122 RAFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 122 G~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
..|-|||+.+. +++.++.||.|+|-..
T Consensus 59 ~~V~Vng~~v~-~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 59 NKIGIFSRPIK-LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp SEEEEEECSCC-TTCBCCTTCEEEECCC
T ss_pred cEEEEcCEECC-CCccCCCCCEEEEEec
Confidence 46899999995 9999999999998543
No 87
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=41.99 E-value=20 Score=29.76 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEECcEEeccC---CcccCCCCEEEEcc
Q psy8861 124 FLVNKKIVNIA---SYKIKPGDIISVRE 148 (550)
Q Consensus 124 V~VNg~~v~~p---s~~vk~gDiI~v~~ 148 (550)
|-|||..|... ++.|+.||.|+|-+
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 78999999875 56799999999853
No 88
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=41.20 E-value=15 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.2
Q ss_pred cEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
.|.|||+.+. +++.|+.||.|.|-+.
T Consensus 69 ~v~VNg~~v~-~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 69 NIAVNGRYVS-WDEELKDGDVVGVFPP 94 (98)
T ss_dssp EEEETTBCCC-TTCBCCTTCEEEEESC
T ss_pred EEEECCEECC-CCCCCCCCCEEEEECC
Confidence 4899999996 6999999999998543
No 89
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=40.15 E-value=12 Score=30.32 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.5
Q ss_pred EEECcEEeccC---CcccCCCCEEEEcc
Q psy8861 124 FLVNKKIVNIA---SYKIKPGDIISVRE 148 (550)
Q Consensus 124 V~VNg~~v~~p---s~~vk~gDiI~v~~ 148 (550)
|-|||..|.+. ++.|+.||.|+|-.
T Consensus 37 VavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 37 VELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred EEECCEECChHHcCcccCCCCCEEEEEe
Confidence 88999999776 57899999999853
No 90
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=37.92 E-value=19 Score=32.63 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.3
Q ss_pred CcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 122 RAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 122 G~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
..++|||+.|+.| ..++.||.|.+-.
T Consensus 110 ngt~VNG~~i~~~-~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 110 ADTYVNGKKVTEP-SILRSGNRIIMGK 135 (154)
T ss_dssp CCEEETTEECCSC-EECCTTCEEEETT
T ss_pred CceEECCEEcCCc-eECCCCCEEEECC
Confidence 3599999999654 6799999999953
No 91
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=37.78 E-value=14 Score=28.41 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEECcEEeccC---CcccCCCCEEEEcc
Q psy8861 124 FLVNKKIVNIA---SYKIKPGDIISVRE 148 (550)
Q Consensus 124 V~VNg~~v~~p---s~~vk~gDiI~v~~ 148 (550)
|.|||..+... ++.++.||.|+|-+
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 78999999764 67899999998754
No 92
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=37.66 E-value=19 Score=31.71 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.0
Q ss_pred cEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
-++|||+.|+. ...++.||.|.+-.
T Consensus 91 gt~VNG~~V~~-~~~L~~GD~I~lG~ 115 (124)
T 3fm8_A 91 RTFVNGSSVSS-PIQLHHGDRILWGN 115 (124)
T ss_dssp CEEETTEECCS-CEEECTTCEEEETT
T ss_pred CEEECCEEcCC-cEECCCCCEEEECC
Confidence 58999999975 46799999999853
No 93
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=37.33 E-value=13 Score=29.60 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.0
Q ss_pred cEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
.|.|||+.++ +++.|+.||.|.|-+
T Consensus 48 ~VavNg~~v~-~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 48 IAKVNGKVVL-EDDEVKDGDFVEVIP 72 (77)
T ss_dssp CEEETTEEEC-SSSCCCSSCCCBCSC
T ss_pred EEEECCEECC-CCCCcCCCCEEEEEc
Confidence 3899999995 568999999998754
No 94
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=36.39 E-value=24 Score=30.27 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.3
Q ss_pred cEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
+|.-||+...+|+..|.+||+|.|++..
T Consensus 15 ~v~r~g~~~~i~~~~l~~GDiv~v~~G~ 42 (113)
T 2hc8_A 15 VVIRDGKEIAVPVEEVAVGDIVIVRPGE 42 (113)
T ss_dssp EEEETTEEEEEEGGGCCTTCEEEECTTC
T ss_pred EEEECCEEEEEEHHHCCCCCEEEECCCC
Confidence 4556899999999999999999998765
No 95
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=35.81 E-value=23 Score=33.25 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.8
Q ss_pred CcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 122 RAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 122 G~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
..++|||+.|+.| ..++.||.|.+-.
T Consensus 140 a~t~VNG~~I~~~-~~L~~GDrI~lG~ 165 (184)
T 4egx_A 140 ADTYVNGKKVTEP-SILRSGNRIIMGK 165 (184)
T ss_dssp CCEEETTEECCSC-EECCTTCEEEETT
T ss_pred CeEEEcCEEcccc-EEcCCCCEEEECC
Confidence 3699999999766 6799999998854
No 96
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=35.26 E-value=23 Score=38.47 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=37.8
Q ss_pred cccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHH
Q psy8861 368 LLRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419 (550)
Q Consensus 368 l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~ 419 (550)
-.+||.+| ++.-++...|++.||+|++||... .+.|. +-||..+..-+.
T Consensus 336 ~~LPV~kl~GIG~~t~~~L~~lGI~TigDL~~~-~~~L~--~~fG~~~~~~l~ 385 (517)
T 3pzp_A 336 KDLPIRKVSGIGKVTEKMLKALGIITCTELYQQ-RALLS--LLFSETSWHYFL 385 (517)
T ss_dssp TTCBGGGSTTCCHHHHHHHHHTTCCBHHHHHHH-HHHHH--HHSCHHHHHHHH
T ss_pred hcCChhhhccccHHHHHHHHHhCCCcHHHHHhh-HHHHH--HHhChHHHHHHH
Confidence 35899998 899999999999999999999987 34333 347876554443
No 97
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=31.67 E-value=24 Score=33.32 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=35.7
Q ss_pred hhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 379 VRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 379 vRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
..+...++. ..++.+|+..+.+||.+++++|++..+.|.+.+.+
T Consensus 173 ~~a~~Ll~~--fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 173 RTAERILER--FGSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHHHHHHHH--HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHH--cCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhc
Confidence 345555554 34689999999999999999999999999988864
No 98
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=31.42 E-value=37 Score=26.39 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=20.1
Q ss_pred EEECcEEeccCCcccCCCCEEEEcc
Q psy8861 124 FLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 124 V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
|-|||..+. ++..++.||.|.|-+
T Consensus 42 vavN~~~v~-~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 42 VKKNGQIVI-DEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEETTEECC-TTSBCCTTCEEEEEE
T ss_pred EEECCEECC-CcccCCCCCEEEEEe
Confidence 889999995 456899999998854
No 99
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=30.93 E-value=33 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=33.3
Q ss_pred hhhhhhhhccCccchHHHhhcCHHHhhccCcccccc-HHHHHHHHH
Q psy8861 379 VRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKS-LNEIKEILA 423 (550)
Q Consensus 379 vRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kS-l~Ei~~~L~ 423 (550)
.|...-|+. ..++.++...|.+||.++ +|.+. .+.|.+.|+
T Consensus 15 kr~~~LL~~--Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 15 KNCRSLMHH--VKNIAELAALSQDELTSI--LGNAANAKQLYDFIH 56 (63)
T ss_dssp HHHHHHHHH--CSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHh
Confidence 345555554 459999999999999999 99888 899998886
No 100
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=30.39 E-value=26 Score=30.75 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.2
Q ss_pred CcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 122 RAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 122 G~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
.-++|||+++.. +.++.||+|.|-.
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~iG~ 106 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVMGP 106 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEECST
T ss_pred CceEECCEEeEe--EECCCCCEEEECC
Confidence 358899999975 8999999999864
No 101
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=30.10 E-value=25 Score=30.37 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred EEECcEEec---cCCcccCCCCEEEEc
Q psy8861 124 FLVNKKIVN---IASYKIKPGDIISVR 147 (550)
Q Consensus 124 V~VNg~~v~---~ps~~vk~gDiI~v~ 147 (550)
|+|||+-+. -..+.|+.||.|.|-
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEEe
Confidence 899998874 678999999999883
No 102
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=29.69 E-value=25 Score=38.37 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=37.4
Q ss_pred CCchhh-hhhhhccCccchHHHhhcC-HHHhhccCccccccHHHHHHHHHhc
Q psy8861 376 ELTVRS-ANCLKAENIHCIGDLIQRS-ENELLRTPNLGRKSLNEIKEILASR 425 (550)
Q Consensus 376 ~LsvRs-~NcLk~a~I~tv~dL~~~s-~~dL~~~~n~G~kSl~Ei~~~L~~~ 425 (550)
++..++ ...|...||.|+.||...- ..||.++|++|+|+.+.|...|+.+
T Consensus 100 GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~ 151 (575)
T 3b0x_A 100 GVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALA 151 (575)
T ss_dssp TTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHH
Confidence 333444 4555666999999998754 4679999999999999987777643
No 103
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=29.37 E-value=37 Score=34.37 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCCCCcc-------ccCccc-cccCCcccccccccC-CchhhhhhhhccCccchHHHh
Q psy8861 327 NEEAIRQSARVLVDQLNVFAALENTPVKK-------ELDSSL-EKVDPILLRPVDDLE-LTVRSANCLKAENIHCIGDLI 397 (550)
Q Consensus 327 P~~Al~~Aa~iL~~~~~~f~~~~~~~~~~-------~~~~~~-~~~~~~l~~~I~~L~-LsvRs~NcLk~a~I~tv~dL~ 397 (550)
-...+..|.+|+...+.+........... ...... +. +.|+-+|. ++.-....|.++||.|+.||.
T Consensus 115 ~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~-----~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~ 189 (339)
T 2q0z_X 115 TEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK-----DSYLKQLPHFTSEHIKRCTDKGVESVFDIM 189 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTT-----SCGGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-----CCceecCCCCCHHHHHHHHhcCCCCHHHHH
Confidence 44567777777777777665433211100 000000 00 11222232 343445567899999999999
Q ss_pred hcCHHHhhccCccccccHHHHHHHHHhc
Q psy8861 398 QRSENELLRTPNLGRKSLNEIKEILASR 425 (550)
Q Consensus 398 ~~s~~dL~~~~n~G~kSl~Ei~~~L~~~ 425 (550)
.++++|+..+=++...-.++|.+.++.+
T Consensus 190 ~~~~~e~~~ll~l~~~~~~~i~~~~~~~ 217 (339)
T 2q0z_X 190 EMEDEERNALLQLTDSQIADVARFCNRY 217 (339)
T ss_dssp HSCHHHHHHHHCCCHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999998888666666678888888765
No 104
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=29.15 E-value=31 Score=36.58 Aligned_cols=56 Identities=20% Similarity=0.093 Sum_probs=41.5
Q ss_pred cccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcc
Q psy8861 368 LLRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKY 428 (550)
Q Consensus 368 l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~ 428 (550)
-.+||.+| ++.-++...|++.||+|++||.... ++|.+ -||.+....+.+.. .|+.
T Consensus 280 ~~lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~~-~~L~~--~fG~~~~~~l~~~a--~G~d 336 (459)
T 1t94_A 280 KDLPIRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSL--LFSETSWHYFLHIS--LGLG 336 (459)
T ss_dssp TTCBGGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HHHHH--HSCHHHHHHHHHHH--TTCC
T ss_pred HcCCHHhcCCcCHHHHHHHHHcCCCcHHHHHhhH-HHHHH--HhChHhHHHHHHHH--cCCC
Confidence 34789998 5888899999999999999999974 55543 68877655554433 3554
No 105
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=29.02 E-value=15 Score=31.67 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=18.0
Q ss_pred cCcEEECcEEeccCCcccCCCCEE
Q psy8861 121 HRAFLVNKKIVNIASYKIKPGDII 144 (550)
Q Consensus 121 hG~V~VNg~~v~~ps~~vk~gDiI 144 (550)
.|.|+|||+++ -...+..||.|
T Consensus 61 nGtVFVNGqrv--~~~~I~~gDtI 82 (102)
T 3uv0_A 61 VGKIFVNDQEE--TVVDIGMENAV 82 (102)
T ss_dssp SSCEEETTEEE--SEEEECGGGCB
T ss_pred cCcEEECCEEe--eeEEccCCccc
Confidence 58999999999 56677888873
No 106
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=27.93 E-value=27 Score=29.98 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=22.0
Q ss_pred cCcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 121 HRAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 121 hG~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
..-++|||+++..+ ..++.||+|.+-.
T Consensus 79 ~ngt~vNg~~i~~~-~~L~~GD~I~iG~ 105 (120)
T 1wln_A 79 DAETYVDGQRISET-TMLQSGMRLQFGT 105 (120)
T ss_dssp SSCEEETSCBCSSC-EEECTTCEEEETT
T ss_pred CCCEEECCEEcCCC-EECCCCCEEEECC
Confidence 35689999999743 6799999999865
No 107
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=27.83 E-value=25 Score=29.30 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.1
Q ss_pred cEEECcEEec---cCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVN---IASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~---~ps~~vk~gDiI~v~~ 148 (550)
.|.|||+.+. ...+.++.||.|.|-+
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 5899999885 5788999999998854
No 108
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=27.55 E-value=32 Score=28.92 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=28.4
Q ss_pred CCchhhhhhhhccCccchHHHhhcCHHHh-hccCccc
Q psy8861 376 ELTVRSANCLKAENIHCIGDLIQRSENEL-LRTPNLG 411 (550)
Q Consensus 376 ~LsvRs~NcLk~a~I~tv~dL~~~s~~dL-~~~~n~G 411 (550)
+++..+..-|.++||+|+.||......+. ++++..|
T Consensus 11 Nig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~ 47 (93)
T 3mab_A 11 NIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEND 47 (93)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHhC
Confidence 78888999999999999999999887653 3444333
No 109
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=26.48 E-value=48 Score=26.79 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEECcEEeccCCcccCCCCEEEEc
Q psy8861 124 FLVNKKIVNIASYKIKPGDIISVR 147 (550)
Q Consensus 124 V~VNg~~v~~ps~~vk~gDiI~v~ 147 (550)
..|||+.++ .++.++.||+|+|-
T Consensus 44 AkVNG~~v~-L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 44 AKVDGRIVP-IDYKVKTGEIIDVL 66 (78)
T ss_dssp EEETTEEEC-TTCBCCTTCBEEEE
T ss_pred EEECCEEcC-CCcccCCCCEEEEE
Confidence 578999995 57899999999984
No 110
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=26.38 E-value=43 Score=27.75 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=21.6
Q ss_pred cEEECcEEec---cCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVN---IASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~---~ps~~vk~gDiI~v~~ 148 (550)
.|.||+.-+. .+.+.|+.||.|.|=+
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 4889999765 5889999999998854
No 111
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=25.80 E-value=32 Score=28.52 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=30.3
Q ss_pred hhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhc
Q psy8861 380 RSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASR 425 (550)
Q Consensus 380 Rs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~ 425 (550)
+|++.|++--. --.|..|+..+++||.+-.+-|.++|+++
T Consensus 42 KA~~sLk~~P~------~i~s~~e~~~L~giG~ki~~~L~e~L~~~ 81 (87)
T 2kp7_A 42 KALRSLQRYPL------PLRSGKEAKILQHFGDRLCRMLDEKLKQH 81 (87)
T ss_dssp HHHHHHHHCCS------CCCSHHHHHTCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC------CCCCHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 45556665543 23567889999999999999999999865
No 112
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=25.63 E-value=70 Score=26.98 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=36.6
Q ss_pred ccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 370 RPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 370 ~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
.-++.|+|. +=..++..+||.+...|+.++++||.. +|-.++..-+..|.
T Consensus 31 ~WL~~lgL~-qY~~~F~~~gid~~~~L~~Lt~eDLke---LGIt~~GhRkkIL~ 80 (100)
T 2kg5_A 31 VWLATVHLE-QYADTFRRHGLATAGAARGLGHEELKQ---LGISATGHRKRILR 80 (100)
T ss_dssp HHHGGGTCG-GGHHHHHHTTCCBHHHHTTCCHHHHHH---HTCCCHHHHHHHHH
T ss_pred HHHHHCCCH-HHHHHHHHcCCChHHHHHhcCHHHHHH---CCCCChhHHHHHHH
Confidence 346667887 345668889999999999999999864 66666554444443
No 113
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=25.44 E-value=45 Score=31.48 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=38.6
Q ss_pred chhhhhhhhccCccchHH-HhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 378 TVRSANCLKAENIHCIGD-LIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 378 svRs~NcLk~a~I~tv~d-L~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+-++...|..-|-.++-+ +.+-+.++|.++|++|+|..+.|...|++
T Consensus 82 pk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 82 PKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 356778888878777654 66788899999999999999999988864
No 114
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=24.84 E-value=35 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.4
Q ss_pred cEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
-++|||+++. .+.+++||.|.+-.
T Consensus 66 Gt~vng~~i~--~~~L~~gd~i~iG~ 89 (100)
T 3po8_A 66 GTTVNNAPVQ--EWQLADGDVIRLGH 89 (100)
T ss_dssp CCEETTEECS--EEECCTTCEEEETT
T ss_pred CEEECCEECc--eEECCCCCEEEECC
Confidence 4889999986 57899999999864
No 115
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=24.38 E-value=49 Score=25.26 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=19.3
Q ss_pred EEECcEEeccCCcccCCCCEEEEc
Q psy8861 124 FLVNKKIVNIASYKIKPGDIISVR 147 (550)
Q Consensus 124 V~VNg~~v~~ps~~vk~gDiI~v~ 147 (550)
+.|||+.++. ++.++.||.|++-
T Consensus 39 a~vNg~lvdl-~~~L~~~~~Veiv 61 (73)
T 2kmm_A 39 AKVNHKLVPL-SYVLNSGDQVEVL 61 (73)
T ss_dssp EEETTEECCT-TCBCCSSSBEEEE
T ss_pred EEECCEEeCC-CcCcCCCCEEEEE
Confidence 5799999965 7889999988874
No 116
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=23.81 E-value=33 Score=28.68 Aligned_cols=25 Identities=4% Similarity=0.267 Sum_probs=20.6
Q ss_pred cEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
-++|||+.+.. ...+++||+|.+-.
T Consensus 70 Gt~vng~~i~~-~~~L~~Gd~i~~G~ 94 (106)
T 3gqs_A 70 GVIVEGRKIEH-QSTLSANQVVALGT 94 (106)
T ss_dssp CCEETTEECSS-EEECCTTCCEEETT
T ss_pred CeEECCEECCC-CeECCCCCEEEECC
Confidence 47899999975 46899999999864
No 117
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.80 E-value=31 Score=28.91 Aligned_cols=76 Identities=16% Similarity=0.035 Sum_probs=43.3
Q ss_pred CCchhhhhhhhccCccchHHHhhcCHHHhh-ccCccccccHHHHHHHHHhcCccccccccccccCCCChHHHHHHHHHHH
Q psy8861 376 ELTVRSANCLKAENIHCIGDLIQRSENELL-RTPNLGRKSLNEIKEILASRGKYYMRHRHGFRKLNRTSSHRLIMLRNMT 454 (550)
Q Consensus 376 ~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~-~~~n~G~kSl~Ei~~~L~~~gl~lmrhrk~~rklgr~~~hR~~llrnl~ 454 (550)
+++..+..-|.++||+|+.||......++- +++-.|..---.+.=+|. |.--+ ..+.-| +..|++-|+...
T Consensus 11 NiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~~~L~aL~--gAi~G---~~w~~l---~~~~K~~L~~~~ 82 (93)
T 3bqs_A 11 NIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALE--GAVQG---IRWHGL---DEAKKIELKKFH 82 (93)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHH--HHHHT---SCGGGS---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHH--HHHcC---CCHHHC---CHHHHHHHHHHH
Confidence 677788889999999999999988776543 444443221112222221 11111 223333 345666667666
Q ss_pred HHHHh
Q psy8861 455 ISLLR 459 (550)
Q Consensus 455 t~Li~ 459 (550)
.+|--
T Consensus 83 ~~~~~ 87 (93)
T 3bqs_A 83 QSLEG 87 (93)
T ss_dssp HHHC-
T ss_pred HHhhc
Confidence 66643
No 118
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=23.21 E-value=39 Score=30.18 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.1
Q ss_pred HcCcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 120 SHRAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 120 ~hG~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
+..-++|||+++....+.++.||+|.|-.
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVFGK 113 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEETT
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEECC
Confidence 44458899999965457899999999975
No 119
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=22.05 E-value=35 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.8
Q ss_pred cEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
-|.|||+.+ .++..++ ||.|+|-.
T Consensus 38 vV~vNG~~v-~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 38 TVLVDGRPV-PEDQSVE-VDRVKVLR 61 (74)
T ss_dssp CEECCCCCC-CTTSSSC-CCCEEECS
T ss_pred EEEECCEEC-CHHHCCC-CCEEEEEE
Confidence 389999998 5666665 99999854
No 120
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=21.76 E-value=32 Score=37.95 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=36.9
Q ss_pred CchhhhhhhhccCccchHHHhhcCHHHhhcc--CccccccHHHHHHHHH
Q psy8861 377 LTVRSANCLKAENIHCIGDLIQRSENELLRT--PNLGRKSLNEIKEILA 423 (550)
Q Consensus 377 LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~--~n~G~kSl~Ei~~~L~ 423 (550)
+.-.....|.++||.|+.||. .+.++|.++ +++|++-++++...+.
T Consensus 665 i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~~~~~~~~ 712 (715)
T 2va8_A 665 VGRKRARLLYNNGIKELGDVV-MNPDKVKNLLGQKLGEKVVQEAARLLN 712 (715)
T ss_dssp CCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhChhHHHHHHHHHHHhhc
Confidence 333444568899999999999 999999999 8888887777776654
No 121
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=21.72 E-value=42 Score=32.55 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.1
Q ss_pred cCcEEECcEEeccCCcccC-CCCEEEEc
Q psy8861 121 HRAFLVNKKIVNIASYKIK-PGDIISVR 147 (550)
Q Consensus 121 hG~V~VNg~~v~~ps~~vk-~gDiI~v~ 147 (550)
.|-|.|||++++.+. .++ +||.|.|.
T Consensus 134 ngtvyvNg~~i~~~~-~L~~~GD~I~ig 160 (238)
T 1wv3_A 134 NTDVYINYELQEQLT-NKAYIGDHIYVE 160 (238)
T ss_dssp TCCEEETTEECCSSE-EEEETTCEEEET
T ss_pred CCCEEECCEEeccce-eccCCcCEEEEC
Confidence 567999999997776 589 99999984
No 122
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=21.35 E-value=65 Score=26.16 Aligned_cols=34 Identities=3% Similarity=0.239 Sum_probs=27.4
Q ss_pred ccccCCchhhhhhhhccCccchHHHhhcCHHHhhc
Q psy8861 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLR 406 (550)
Q Consensus 372 I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~ 406 (550)
++.|+|+-=+-+ +..+||.+..+|..++++||..
T Consensus 30 L~~lgL~qY~~~-F~~~g~~s~e~l~~lt~~DL~~ 63 (82)
T 3hil_A 30 LESIRMKRYILH-FHSAGLDTMECVLELTAEDLTQ 63 (82)
T ss_dssp HHHTTCGGGHHH-HHHTTCCSGGGGTTCCHHHHHH
T ss_pred HHhCCHHHHHHH-HHHcCCChHHHHhcCCHHHHHH
Confidence 466788766666 4588999999999999999853
No 123
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=20.95 E-value=61 Score=28.39 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=21.1
Q ss_pred CcEEECcEEeccCC-cccCCCCEEEEccC
Q psy8861 122 RAFLVNKKIVNIAS-YKIKPGDIISVREK 149 (550)
Q Consensus 122 G~V~VNg~~v~~ps-~~vk~gDiI~v~~~ 149 (550)
.-.+|||+++..-. +.++.||+|.+-..
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~G~s 122 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRFGGS 122 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEETTC
T ss_pred CceEECCEECCCCceeECCCCCEEEECCc
Confidence 44789999985432 57999999999643
No 124
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=20.79 E-value=49 Score=28.04 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.7
Q ss_pred CcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 122 RAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 122 G~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
.-++|||+.+. .+.+++||+|.+-.
T Consensus 73 nGt~vng~~i~--~~~L~~gd~i~iG~ 97 (115)
T 2xt9_B 73 NGTYVNREPVD--SAVLANGDEVQIGK 97 (115)
T ss_dssp SCEEETTEECS--EEEECTTCEEEETT
T ss_pred CCeEECCEEcc--eEECCCCCEEEECC
Confidence 34789999987 57899999999964
No 125
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=20.29 E-value=45 Score=27.61 Aligned_cols=34 Identities=6% Similarity=0.242 Sum_probs=27.2
Q ss_pred ccccCCchhhhhhhhccCccchHHHhhcCHHHhhc
Q psy8861 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLR 406 (550)
Q Consensus 372 I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~ 406 (550)
++.|+|+-=+-+ +.++||.+...|..++++||..
T Consensus 32 L~~lgL~qY~~~-F~~~g~d~~e~l~~lt~~DL~~ 65 (90)
T 3h8m_A 32 LQAIKMERYKDN-FTAAGYNSLESVARMTIEDVMS 65 (90)
T ss_dssp HHHTTCGGGHHH-HHHTTCCSHHHHHTCCHHHHHH
T ss_pred HHHCChHHHHHH-HHHcCCChHHHHhhCCHHHHHH
Confidence 456777765555 5689999999999999999864
No 126
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=20.23 E-value=61 Score=29.84 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=22.2
Q ss_pred cEEECcEEecc---CCcccCCCCEEEEccC
Q psy8861 123 AFLVNKKIVNI---ASYKIKPGDIISVREK 149 (550)
Q Consensus 123 ~V~VNg~~v~~---ps~~vk~gDiI~v~~~ 149 (550)
.|.|||+.+.. .++.|++||.|.|-+.
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEECc
Confidence 48899999976 3788999999998543
No 127
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=20.20 E-value=41 Score=29.09 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=21.6
Q ss_pred cEEECcEEe---ccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIV---NIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v---~~ps~~vk~gDiI~v~~ 148 (550)
.|+|||+-+ .-..+.|+.||.|.|-+
T Consensus 75 ~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 75 LVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp EEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred EEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 499999866 46889999999998843
No 128
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=20.04 E-value=53 Score=34.37 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=31.5
Q ss_pred ccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 390 IHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 390 I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
..|+..++.-|.+||.++.|+|++-...|++.|..
T Consensus 335 FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r 369 (377)
T 3c1y_A 335 FKTLDQISKASVEDLKKVEGIGEKRARAISESISS 369 (377)
T ss_dssp HCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHH
Confidence 35778889999999999999999999999999874
No 129
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=20.01 E-value=35 Score=28.84 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.5
Q ss_pred cCHHHhhccCccccccHHHHHHHHHhcC
Q psy8861 399 RSENELLRTPNLGRKSLNEIKEILASRG 426 (550)
Q Consensus 399 ~s~~dL~~~~n~G~kSl~Ei~~~L~~~g 426 (550)
.|-+||++++++|.+.++.|++.+..+-
T Consensus 49 ~s~edL~~V~Gig~~~~e~l~~~l~~f~ 76 (97)
T 3arc_U 49 ESVEDVLNIPGLTERQKQILRENLEHFT 76 (97)
T ss_dssp SSGGGGGGCTTCCHHHHHHHHHTGGGEE
T ss_pred CCHHHHHhccCCCHHHHHHHHHHhceeE
Confidence 4556778999999999999998876543
Done!