Query psy8861
Match_columns 550
No_of_seqs 495 out of 3220
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 21:16:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8861.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8861hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9d1 d.66.1.2 (D:2-205) Rib 100.0 3.5E-61 2.6E-65 464.4 17.7 198 3-201 1-198 (204)
2 d2uubd1 d.66.1.2 (D:2-209) Rib 100.0 1.3E-60 9.7E-65 460.9 19.0 199 2-201 1-202 (208)
3 d1c06a_ d.66.1.2 (A:) Ribosoma 100.0 1.9E-48 1.4E-52 362.5 15.6 152 48-201 2-153 (159)
4 d2qamn1 d.188.1.1 (N:1-120) Pr 100.0 2.8E-49 2E-53 351.0 6.9 119 430-548 1-119 (120)
5 d2zjrk1 d.188.1.1 (K:3-115) Pr 100.0 4.4E-47 3.2E-51 333.9 13.0 113 432-544 1-113 (113)
6 d1gd8a_ d.188.1.1 (A:) Prokary 100.0 9.2E-45 6.7E-49 315.2 11.7 104 443-546 1-105 (105)
7 d2cqma1 d.188.1.1 (A:28-136) P 100.0 1.4E-41 1.1E-45 297.3 10.2 101 449-549 1-103 (109)
8 d1bdfa2 d.181.1.1 (A:53-178) R 99.9 7.2E-28 5.3E-32 215.7 9.2 83 244-326 1-83 (126)
9 d1smya2 d.181.1.1 (A:50-172) R 99.9 5E-28 3.6E-32 216.0 6.4 83 244-326 1-85 (123)
10 d1lb2b_ a.60.3.1 (B:) C-termin 99.9 1.2E-23 9.1E-28 170.4 6.1 70 365-434 1-70 (72)
11 d1z3eb1 a.60.3.1 (B:245-311) C 99.9 2.4E-23 1.7E-27 166.5 4.1 64 366-429 3-66 (67)
12 d1doqa_ a.60.3.1 (A:) C-termin 99.8 4.6E-22 3.4E-26 159.9 4.7 66 365-430 3-68 (69)
13 d1bdfa1 d.74.3.1 (A:2-52,A:179 99.7 4.2E-18 3E-22 147.3 10.6 103 195-346 3-105 (105)
14 d1smya1 d.74.3.1 (A:1-49,A:173 99.5 2.7E-15 2E-19 129.4 6.7 98 201-348 8-105 (106)
15 d1dm9a_ d.66.1.3 (A:) Heat sho 99.5 2.2E-14 1.6E-18 123.5 6.7 57 96-153 4-60 (104)
16 d1kska3 d.66.1.5 (A:1-59) Pseu 99.2 2.7E-12 2E-16 99.2 5.0 53 97-150 1-53 (59)
17 d1vioa2 d.66.1.5 (A:0-57) Pseu 99.2 3.2E-12 2.3E-16 98.5 5.0 52 97-149 2-53 (58)
18 d1p9ka_ d.66.1.6 (A:) Hypothet 99.0 1.3E-11 9.7E-16 100.8 0.3 55 95-149 19-73 (79)
19 d1twfc1 d.74.3.1 (C:3-41,C:173 97.8 1.7E-05 1.2E-09 69.9 7.2 115 205-347 6-127 (135)
20 d1szpa1 a.60.4.1 (A:81-144) DN 97.8 8.2E-06 6E-10 63.3 4.2 55 370-424 1-58 (64)
21 d1h3fa2 d.66.1.4 (A:352-432) T 97.7 2.1E-05 1.5E-09 63.5 5.3 54 97-150 18-71 (81)
22 d1b22a_ a.60.4.1 (A:) DNA repa 97.4 2.7E-05 2E-09 61.3 2.8 55 370-424 8-65 (70)
23 d1jh3a_ d.66.1.4 (A:) Tyrosyl- 97.1 0.00032 2.3E-08 58.3 5.6 41 102-142 37-77 (99)
24 d1pzna1 a.60.4.1 (A:35-95) DNA 95.9 0.0026 1.9E-07 48.0 3.8 49 376-424 8-56 (61)
25 d1xppa_ d.74.3.2 (A:) DNA-dire 95.7 0.023 1.7E-06 46.7 8.9 43 204-251 4-46 (99)
26 d2i1qa1 a.60.4.1 (A:5-64) DNA 95.3 0.007 5.1E-07 45.5 4.0 48 377-424 7-54 (60)
27 d1twfk_ d.74.3.2 (K:) RPB11 {B 91.8 0.16 1.1E-05 42.6 6.6 83 205-347 19-103 (114)
28 d1twfc2 d.181.1.1 (C:42-172) R 88.0 0.071 5.2E-06 45.5 1.3 77 243-326 1-108 (131)
29 d1kfta_ a.60.2.3 (A:) Excinucl 86.9 0.24 1.7E-05 36.2 3.5 43 379-423 13-55 (56)
30 d1x2ia1 a.60.2.5 (A:2-69) ATP- 86.1 0.27 2E-05 37.1 3.6 43 380-424 22-64 (68)
31 d1dgsa1 a.60.2.2 (A:401-581) N 84.9 0.3 2.2E-05 43.9 3.8 69 376-444 48-120 (181)
32 d1jx4a2 e.8.1.7 (A:1-240) DinB 82.8 0.66 4.8E-05 42.9 5.5 49 369-419 177-226 (240)
33 d2a1jb1 a.60.2.5 (B:219-296) D 81.7 0.54 4E-05 36.3 3.7 35 390-424 39-73 (78)
34 d2bgwa1 a.60.2.5 (A:160-229) D 81.1 0.5 3.6E-05 35.7 3.2 44 379-424 24-67 (70)
35 d1u9la_ a.60.4.2 (A:) Transcri 79.6 0.48 3.5E-05 36.1 2.6 57 368-424 5-61 (68)
36 d2q0zx1 a.289.1.1 (X:33-208) P 68.2 1.5 0.00011 38.2 3.2 94 327-424 73-174 (176)
37 d2a1ja1 a.60.2.5 (A:837-898) D 66.8 1.4 0.0001 32.2 2.4 47 376-424 10-56 (62)
38 d2p6ra2 a.289.1.2 (A:489-686) 64.7 0.81 5.9E-05 41.6 0.7 42 379-421 155-197 (198)
39 d2g1la1 b.26.1.2 (A:498-599) K 60.0 2.8 0.0002 33.3 3.2 26 121-147 68-93 (102)
40 d1zeta2 e.8.1.7 (A:27-299) DNA 57.3 2.6 0.00019 39.3 2.9 47 371-419 209-256 (273)
41 d1dxsa_ a.60.1.2 (A:) C-termin 51.4 3.8 0.00028 29.5 2.3 33 373-406 7-39 (57)
42 d2affa1 b.26.1.2 (A:3-100) Ant 48.6 4.6 0.00034 31.6 2.7 26 122-148 65-90 (98)
43 d1t94a2 e.8.1.7 (A:75-407) DNA 47.3 6.4 0.00046 37.9 4.0 51 368-421 273-324 (333)
44 d1gm5a2 b.40.4.9 (A:106-285) R 39.5 5.6 0.00041 34.3 2.0 34 368-401 8-42 (180)
45 d1zud21 d.15.3.2 (2:2-66) Thia 39.4 11 0.00083 27.4 3.5 25 123-147 32-59 (65)
46 d2ff4a3 b.26.1.2 (A:284-382) P 38.6 6.8 0.0005 30.8 2.2 25 123-148 66-90 (99)
47 d2cu3a1 d.15.3.2 (A:1-63) Unch 38.0 13 0.00091 27.1 3.5 24 124-147 32-58 (63)
48 d2zjrs1 b.53.1.1 (S:1-175) Rib 37.6 5.5 0.0004 35.0 1.6 28 300-327 146-174 (175)
49 d1x40a1 a.60.1.2 (A:8-85) Cent 36.2 11 0.00082 28.3 3.0 48 371-422 14-61 (78)
50 d1dgsa1 a.60.2.2 (A:401-581) N 34.3 15 0.0011 32.0 4.1 40 383-423 121-160 (181)
51 d1v8ca1 d.15.3.1 (A:1-87) MoaD 30.7 23 0.0017 26.7 4.1 27 123-149 54-83 (87)
52 d1ucva_ a.60.1.2 (A:) Ephrin t 28.5 23 0.0017 26.5 3.7 44 372-419 14-57 (81)
53 d1cuka2 a.60.2.1 (A:65-142) DN 28.0 17 0.0013 27.7 2.8 43 381-423 22-65 (78)
54 d2bcqa1 a.60.6.1 (A:252-327) D 27.0 15 0.0011 27.4 2.3 24 401-424 45-68 (76)
55 d1tygb_ d.15.3.2 (B:) Thiamin 26.2 27 0.002 25.2 3.6 25 123-147 33-60 (65)
56 d1v38a_ a.60.1.2 (A:) Sam-doma 26.1 22 0.0016 26.3 3.2 48 371-422 18-65 (78)
57 d1vjka_ d.15.3.1 (A:) Molybdop 25.8 28 0.002 26.0 3.8 60 84-149 27-86 (88)
58 d1ow5a_ a.60.1.2 (A:) Serine/t 24.2 31 0.0023 24.2 3.5 47 373-423 8-54 (60)
59 d1jmsa1 a.60.6.1 (A:148-242) T 23.8 16 0.0012 28.6 2.0 22 402-423 62-83 (95)
60 d1ixra1 a.60.2.1 (A:63-135) DN 23.7 22 0.0016 26.7 2.7 43 381-423 23-66 (73)
61 d1gxca_ b.26.1.2 (A:) Chk2 kin 23.3 18 0.0013 29.0 2.2 26 123-148 76-102 (116)
62 d1feua_ b.53.1.1 (A:) Ribosoma 22.3 18 0.0013 31.7 2.2 51 278-328 123-178 (185)
63 d1xo3a_ d.15.3.3 (A:) C9orf74 22.2 23 0.0017 27.6 2.7 26 123-148 68-96 (101)
64 d2axtu1 a.60.12.2 (U:37-134) P 20.6 21 0.0015 28.4 2.1 27 399-425 50-76 (98)
65 d1wlna1 b.26.1.2 (A:8-114) Afa 20.4 21 0.0015 28.3 2.0 26 122-148 73-98 (107)
66 d1t6sa1 a.4.5.60 (A:1-85) Segr 20.1 40 0.0029 25.4 3.6 54 469-524 4-60 (85)
No 1
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.5e-61 Score=464.44 Aligned_cols=198 Identities=61% Similarity=1.028 Sum_probs=188.0
Q ss_pred CCCCCchhhhhhcCCCCccccccccccccccCCCCCCCCCCCCcccccchhhhhHhhhhhHhhhCCcHHHHHHHHHHhhc
Q psy8861 3 RYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGAR 82 (550)
Q Consensus 3 r~~gp~~Ki~Rrlg~~l~~~~~~~~~~~k~~~~~~pg~~~~~~~~k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~~~a~~ 82 (550)
||+||++|+|||+|+++|++++.++++.++..+++|||||.+++ |.|+||.||+||||+|++||++|+||++||++|.+
T Consensus 1 Ry~GPk~Ki~RRlG~~l~~~~~~~~~~~~~~~~~~PG~hg~~~~-k~S~yg~qL~EKQklr~~YGi~EkQ~~~~~~~a~~ 79 (204)
T d2gy9d1 1 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAAR 79 (204)
T ss_dssp CCCSCCHHHHHHHSSCCCSSTTSSSCSGGGTCCSCSSSSSSSCC-CCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCchhhhcccCCCCcccCCCCccccccccccCCCCCCCCCCC-cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 89999999999999999988666777777777899999998654 89999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCchhhHHHHhhhhc
Q psy8861 83 LKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLEL 162 (550)
Q Consensus 83 ~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~~~~~~i~~~~~~ 162 (550)
.+|+|+++|+++||+|||++|||+|||+|+.+|||||+||||+|||++||+|||.|++||+|+|++++++...++++++.
T Consensus 80 ~~g~tg~~l~~~LE~RLDnvv~R~gfa~t~~~ARQ~v~Hghi~VNgk~VnIPSy~vk~GDvIsvkeksk~~~~i~~~~e~ 159 (204)
T d2gy9d1 80 LKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALEL 159 (204)
T ss_dssp SSSCHHHHHHHHHTTBHHHHHHHHTSSSSHHHHHHHHHTTCEEESSSBCCCTTCBCCTTCBEEECTTGGGCHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhcceecCCEEEEeccEeecCCCEEEeccchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCcEEEecCccEEEEecccCcccccccccccCC
Q psy8861 163 SEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLLK 201 (550)
Q Consensus 163 ~~~~~~p~~l~vd~~~~~g~~~~~P~~~~Ipl~inEll~ 201 (550)
.....+|+||++|.++++|+|++.|+++|||.++||+++
T Consensus 160 ~~~~~~P~wLevd~~~l~g~v~~~P~reei~~~ineqLV 198 (204)
T d2gy9d1 160 AEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI 198 (204)
T ss_dssp HTTCCCCTTEEEETTTTEEEECSCCCTTTCCCSCCHHHH
T ss_pred cccCCCCCeEEEecccCEEEEEeccCHHHCCCCCCccEE
Confidence 766788999999999999999999999999999999764
No 2
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.3e-60 Score=460.93 Aligned_cols=199 Identities=45% Similarity=0.820 Sum_probs=188.8
Q ss_pred CCCCCCchhhhhhcCCCCccccccccccccccC---CCCCCCCCCCCcccccchhhhhHhhhhhHhhhCCcHHHHHHHHH
Q psy8861 2 ARYIGPKAKLCRREGIDLFLKSARRSLDSKCKL---DLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGILEKQFRRYFI 78 (550)
Q Consensus 2 ~r~~gp~~Ki~Rrlg~~l~~~~~~~~~~~k~~~---~~~pg~~~~~~~~k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~~ 78 (550)
+||+||++|+|||+|+++|++ +.++++.|+.. +|+|||||+++++|.|+|+.||+||||+|++||++|+||++||.
T Consensus 1 gRy~GPk~K~~RRlG~~l~~~-g~~~~~~k~~~~kr~~~PG~hg~~r~~k~S~Yg~qL~EKQKlr~~YGv~EkQfr~~~~ 79 (208)
T d2uubd1 1 GRYIGPVCRLCRREGVKLYLK-GERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFE 79 (208)
T ss_dssp CCCCSCCHHHHHHHTSCCCSS-STTSSSTTSSSSSCCSCSSTTSSSCCCCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCccCchhhhhccCCCCcCCC-CcccCCCCcccccCCCCCCCCCCcCCCcccHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 599999999999999999998 66777777654 49999999988778999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCchhhHHHHh
Q psy8861 79 EGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIAN 158 (550)
Q Consensus 79 ~a~~~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~~~~~~i~~ 158 (550)
+|.+.+|+||++|+++||+|||++|||+|||+|+.+|||||+||||+|||++||+|||.|++||+|+|++++++...+++
T Consensus 80 ~A~~~~G~tg~~ll~lLE~Rld~vv~r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vreksk~~~~i~~ 159 (208)
T d2uubd1 80 EASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQ 159 (208)
T ss_dssp HHHHSSSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHHH
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhcCeecCCeEEEeccEEecCCceeehhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCcEEEecCccEEEEecccCcccccccccccCC
Q psy8861 159 SLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLLK 201 (550)
Q Consensus 159 ~~~~~~~~~~p~~l~vd~~~~~g~~~~~P~~~~Ipl~inEll~ 201 (550)
+++......+|+||++|.++++|+|++.|+++|||.++||+++
T Consensus 160 ~le~~~~~~~P~wLevd~~~l~g~v~~~P~reei~~~ine~LI 202 (208)
T d2uubd1 160 NLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLV 202 (208)
T ss_dssp HHHHHTTCCCCTTEEEETTTTEEEECSCCCGGGCCCSCCHHHH
T ss_pred HHHhhccCCCCCCeEeecccCEEEEEeccCHHHCCCCCCccEE
Confidence 9987776778999999999999999999999999999999863
No 3
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=1.9e-48 Score=362.46 Aligned_cols=152 Identities=45% Similarity=0.781 Sum_probs=146.2
Q ss_pred cccchhhhhHhhhhhHhhhCCcHHHHHHHHHHhhccCCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEEC
Q psy8861 48 RTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVN 127 (550)
Q Consensus 48 k~s~y~~~L~~Kqkl~~~YG~~ekq~~~~~~~a~~~~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VN 127 (550)
|.|+||.||+||||+|++||++|+||++||++|.+.+|+||++|+++||+|||++|||+|||.|+.+|||+|+||||+||
T Consensus 2 K~S~yg~qL~eKQK~r~~YGi~EkQf~~~~~~A~~~~g~tg~~ll~llE~RlD~vv~r~gfa~t~~~arQ~v~Hghi~vN 81 (159)
T d1c06a_ 2 KLSEYGLQLQEKQKLRHMYGVNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILVD 81 (159)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSSSTHHHHHHHHHHHCHHHHHHHHTSSSSHHHHHHHHHTSCEEET
T ss_pred CccHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhccCcccCCHHHHHHHHHhcceEcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCcccCCCCEEEEccCchhhHHHHhhhhccCCCCCCCcEEEecCccEEEEecccCcccccccccccCC
Q psy8861 128 KKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVFKSEPNRSEFANDINDLLK 201 (550)
Q Consensus 128 g~~v~~ps~~vk~gDiI~v~~~~~~~~~i~~~~~~~~~~~~p~~l~vd~~~~~g~~~~~P~~~~Ipl~inEll~ 201 (550)
|++||+|||.|++||+|+|++++++...++++++.. ..+|+||++|.++++|+|++.|+++|||.++|++++
T Consensus 82 gk~v~iPSy~vk~GDvIsvkeksk~~~~v~~~~~~~--~~~P~wL~vD~~~l~g~v~~~P~r~eIp~~ine~LV 153 (159)
T d1c06a_ 82 GSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALEAN--NYIPDYLSFDPEKMEGTYTRLPERSELPAEINEALI 153 (159)
T ss_dssp TEECCCSSCCCCSSCEEEECGGGSSCHHHHHHTTCC--CCCCSSEEEETTTTEEEECSCCCTTTSCSSCCCHHH
T ss_pred ceEEEecceeecCCcEEeeccccchHHHHHHHHHcc--CCCCCEEEEEcccCEEEEEEecCHHHCCCCCCccEE
Confidence 999999999999999999999999999999998743 457999999999999999999999999999998764
No 4
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.8e-49 Score=351.03 Aligned_cols=119 Identities=65% Similarity=1.011 Sum_probs=118.1
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHHHHHHhhcCChHHHHHHH
Q psy8861 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDRKITIKLF 509 (550)
Q Consensus 430 mrhrk~~rklgr~~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~~~~~~~kLf 509 (550)
|+|+++++||||+++||++|||||+|+||+||+|+||++||||+|++||+|||+||+|++|++|++.+||.|+++++|||
T Consensus 1 MrH~~~~rklgr~~~hR~allrnl~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf 80 (120)
T d2qamn1 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF 80 (120)
T ss_dssp CCTTCCCCCTTSCTTGGGTTTHHHHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTT
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEecHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCeEEEEeccCCCCCCCCeEEEEeccCC
Q psy8861 510 SELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQT 548 (550)
Q Consensus 510 ~~l~pry~~r~gGyTRi~k~~~R~gD~A~ma~iElv~~~ 548 (550)
++|+|||++||||||||+|+++|.||+||||||||||++
T Consensus 81 ~~iapry~~R~GGYTRI~klg~R~GD~A~maiiElVd~~ 119 (120)
T d2qamn1 81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119 (120)
T ss_dssp TTHHHHTTTCCSCCEECCCCCCCSSSCCCBCCEEETTCC
T ss_pred HHHHhHhcCCCCCeeeeeecCCCCCCCCCEEEEEEecCC
Confidence 999999999999999999999999999999999999987
No 5
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=4.4e-47 Score=333.86 Aligned_cols=113 Identities=44% Similarity=0.664 Sum_probs=112.0
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHHHHHHhhcCChHHHHHHHhh
Q psy8861 432 HRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDRKITIKLFSE 511 (550)
Q Consensus 432 hrk~~rklgr~~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~~~~~~~kLf~~ 511 (550)
|+++++||||+++||++|||||+++||+||||+||++||||+|++||+|||+||+||+|++|++.+||.|+++++|||++
T Consensus 1 H~~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~ 80 (113)
T d2zjrk1 1 HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDE 80 (113)
T ss_dssp CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHT
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCeEEEEeccCCCCCCCCeEEEEe
Q psy8861 512 LGPRYIKINGGYVRILKMGFRVGDNAPMAFIEL 544 (550)
Q Consensus 512 l~pry~~r~gGyTRi~k~~~R~gD~A~ma~iEl 544 (550)
|+|||++||||||||+|+++|.||+||||+|||
T Consensus 81 iapry~~R~GGYTRI~kl~~R~gD~A~ma~iEL 113 (113)
T d2zjrk1 81 VAPKYAERPGGYTRILRVGTRRGDGVTMALIEL 113 (113)
T ss_dssp HHHHTTTSCSCCCEEEECCCCTTTCCCEEEEEC
T ss_pred HhHHhcCCCCCeEEEEECCCCCCCCCceEEEeC
Confidence 999999999999999999999999999999997
No 6
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=9.2e-45 Score=315.23 Aligned_cols=104 Identities=48% Similarity=0.758 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHHHHHHhhcCChHHHHHHHhhhhhccCCCCCC
Q psy8861 443 SSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDRKITIKLFSELGPRYIKINGG 522 (550)
Q Consensus 443 ~~hR~~llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~~~~~~~kLf~~l~pry~~r~gG 522 (550)
++||++|||||+++||+||+|+||++||||+|++||||||+||+|++|++|++.++|.|+++++|||++|+|||++|+||
T Consensus 1 sshR~allrnl~t~Li~~erI~TT~~KAKelr~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~KLf~~lapry~~R~GG 80 (105)
T d1gd8a_ 1 SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGG 80 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSC
T ss_pred ChHHHHHHHHHHHHHHHcCEEEEcHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccC-CCCCCCCeEEEEecc
Q psy8861 523 YVRILKMGF-RVGDNAPMAFIELLN 546 (550)
Q Consensus 523 yTRi~k~~~-R~gD~A~ma~iElv~ 546 (550)
||||+|+++ |.||+||||+|||||
T Consensus 81 YTRI~kl~~~R~GD~A~ma~iElVd 105 (105)
T d1gd8a_ 81 YTRVLKLAERRRGDGAPLALVELVE 105 (105)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEECC
T ss_pred eEEEEecCCCCCCCCCCEEEEEeeC
Confidence 999999975 999999999999998
No 7
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.4e-41 Score=297.25 Aligned_cols=101 Identities=33% Similarity=0.516 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCcEEechhhHHHHhhhhHHHHhhhccCChhHH--HHHHhhcCChHHHHHHHhhhhhccCCCCCCeEEE
Q psy8861 449 MLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNK--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRI 526 (550)
Q Consensus 449 llrnl~t~Li~~erI~TT~~kAke~r~~aeklIt~ak~~~~~~~--r~~~~~l~~~~~~~kLf~~l~pry~~r~gGyTRi 526 (550)
|||||+|+||+||||+||++||||+|+|||+|||+||+||+|++ +++.+|+.|+++++|||++|+|||++|+||||||
T Consensus 1 llrnl~tsLi~herI~TT~~KAKelr~~~ErLIt~aK~~~~~~r~~~~~~~~l~~k~~v~KLf~~lapry~~R~GGYTRI 80 (109)
T d2cqma1 1 LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRM 80 (109)
T ss_dssp HHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSCSCCEEE
T ss_pred ChHHHHHHHHHcCeEEecHHHHHHHHHhHHHHHHHhhcCchhHHHHHHhhhhcccHHHHHHHHHHHhHHHhcCCCCeEEE
Confidence 79999999999999999999999999999999999999999987 7888999999999999999999999999999999
Q ss_pred EeccCCCCCCCCeEEEEeccCCC
Q psy8861 527 LKMGFRVGDNAPMAFIELLNQTK 549 (550)
Q Consensus 527 ~k~~~R~gD~A~ma~iElv~~~~ 549 (550)
+|+++|.||+|+||+|||||+|-
T Consensus 81 ~kl~~R~gD~A~ma~iElv~~p~ 103 (109)
T d2cqma1 81 LQIPNRSLDRAKMAVIEYKGNCL 103 (109)
T ss_dssp EEECCCSSSCCCEEEEEESSCCC
T ss_pred EecCCCCCCCCCeEEEEECCCCC
Confidence 99999999999999999999984
No 8
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=7.2e-28 Score=215.66 Aligned_cols=83 Identities=54% Similarity=0.853 Sum_probs=81.0
Q ss_pred cceeEEEEECCcccccccccCccccHHHHHhccccceeeeccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEE
Q psy8861 244 GCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAH 323 (550)
Q Consensus 244 G~AI~~vkI~gv~hEfs~i~Gv~Edv~~IilNLK~i~~~~~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~Iat 323 (550)
|+|||+|||+|+.|||++||||+|||+||+||||+|+|+.++.++..++|+++||++|||+||.+|++|||+||||||||
T Consensus 1 G~AIt~vkI~Gv~HEfsti~GV~EDV~~IiLNLK~i~~k~~~~~~~~~~l~~~gp~~VtA~di~~~~~veIvNpd~~Iat 80 (126)
T d1bdfa2 1 GCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH 80 (126)
T ss_dssp CEEEEEEEETTCCSTTCCCTTBSSCHHHHHHHHHTCCEECSSCSEEEEEEEEESSEEEEGGGBCCCSSCEESCTTCEEEE
T ss_pred CCCEEEEEECCcccccccCCCchhhHHHHHHhcccceEEecCCCceEEEEEecCcccEEEecccCCCCEEEeCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy8861 324 LSD 326 (550)
Q Consensus 324 L~~ 326 (550)
|++
T Consensus 81 lt~ 83 (126)
T d1bdfa2 81 LTD 83 (126)
T ss_dssp ECS
T ss_pred Eec
Confidence 963
No 9
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=99.94 E-value=5e-28 Score=215.99 Aligned_cols=83 Identities=41% Similarity=0.625 Sum_probs=79.2
Q ss_pred cceeEEEEECCcccccccccCccccHHHHHhccccceeeeccC--ceEEEEEEEeceeeEEeccCccCCCeEEeCCCceE
Q psy8861 244 GCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKLYNR--DYAILNLKKFGKCVVLASDIELLSDIELVNPNHII 321 (550)
Q Consensus 244 G~AI~~vkI~gv~hEfs~i~Gv~Edv~~IilNLK~i~~~~~~~--~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~I 321 (550)
|+|||+|||+|+.|||++||||+|||+||+||||+|+|+..+. ++..++++++||++|||+||.+|++|||+||||||
T Consensus 1 G~AIt~vkI~Gv~HEfsti~GV~EDV~eIiLNLK~i~~~~~~~~~~~~~~~l~~~Gp~~VtA~Di~~~~~veIvNpd~~I 80 (123)
T d1smya2 1 GTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHI 80 (123)
T ss_dssp EEEEEEEEESSCCSTTCCCTTBSSCHHHHHHHHHHCCEEESSTTCSEEEEEEEECSSBCCBGGGSCCCTTEEESCTTCBC
T ss_pred CcCEEEEEECCcccccccCCChhhhHHHHHHhhhhhheeecccccccEEEEEEecCCCeEEeeeecCCCcEEEECCcEEE
Confidence 8999999999999999999999999999999999999997653 67889999999999999999999999999999999
Q ss_pred EEcCC
Q psy8861 322 AHLSD 326 (550)
Q Consensus 322 atL~~ 326 (550)
|||++
T Consensus 81 aTl~~ 85 (123)
T d1smya2 81 ATLEE 85 (123)
T ss_dssp CCBCT
T ss_pred EEEcC
Confidence 99986
No 10
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=1.2e-23 Score=170.40 Aligned_cols=70 Identities=74% Similarity=1.066 Sum_probs=66.7
Q ss_pred CCcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcccccccc
Q psy8861 365 DPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYMRHRH 434 (550)
Q Consensus 365 ~~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lmrhrk 434 (550)
+++|.+||++|+||+||+|||+++||+||+||+++|++||+++||||+||++||+++|+++|++|++.--
T Consensus 1 ~~~L~k~I~~L~lS~R~~N~L~~~gI~tvgdL~~~s~~dLl~~~n~G~KSl~EI~~~L~~~gL~lgm~~~ 70 (72)
T d1lb2b_ 1 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 70 (72)
T ss_dssp CCTTTSBGGGGCCCHHHHHHHHHTTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHHHHHHHTTCCSSCCCS
T ss_pred CchhcCcHHHhCCCHHHHHHHhHcCCcCHHHHHhCCHHHHHhCCCCcHhHHHHHHHHHHHcCCCCCCCCC
Confidence 3578899999999999999999999999999999999999999999999999999999999999998654
No 11
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}
Probab=99.86 E-value=2.4e-23 Score=166.49 Aligned_cols=64 Identities=38% Similarity=0.652 Sum_probs=62.1
Q ss_pred CcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCccc
Q psy8861 366 PILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYY 429 (550)
Q Consensus 366 ~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~l 429 (550)
++|++||++|+||+||+|||+++||+||+||+++|++||+++||||+||++||+++|+++|++|
T Consensus 3 ~~L~~~I~~L~LS~R~~N~Lk~~~I~tv~dL~~~s~~dLl~~~nfG~kSl~EIk~~L~~~gL~l 66 (67)
T d1z3eb1 3 KVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGL 66 (67)
T ss_dssp HHHTCBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCCC
T ss_pred chhcCCHHHhcCCHHHHHHHHHcCCcCHHHHHHCCHHHHHhCCCCchhhHHHHHHHHHHcCCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999987
No 12
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=99.84 E-value=4.6e-22 Score=159.95 Aligned_cols=66 Identities=32% Similarity=0.494 Sum_probs=63.3
Q ss_pred CCcccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHhcCcccc
Q psy8861 365 DPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRGKYYM 430 (550)
Q Consensus 365 ~~~l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~~gl~lm 430 (550)
++.+++||++|+||+||+|||+++||+||+||+++|++||+++||||+||++||+++|+++|++|.
T Consensus 3 ~~~L~~~I~~L~LS~R~~N~L~~~gI~tv~dL~~~s~~dLl~i~n~G~ksl~EI~~~L~~~gl~l~ 68 (69)
T d1doqa_ 3 EEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLK 68 (69)
T ss_dssp CSSCCCCHHHHTCCHHHHHHHHHTTCCSHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHCCCSC
T ss_pred hhHhCCcHHHcCCCHHHHHHHHHcCCccHHHHHHCCHHHHHhCCCCCHHHHHHHHHHHHHcCCcCC
Confidence 456889999999999999999999999999999999999999999999999999999999999874
No 13
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]}
Probab=99.73 E-value=4.2e-18 Score=147.26 Aligned_cols=103 Identities=42% Similarity=0.717 Sum_probs=85.7
Q ss_pred cccccCCCeeEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHHh
Q psy8861 195 DINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIIL 274 (550)
Q Consensus 195 ~inEll~p~~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~Iil 274 (550)
...|++.|..+.+++.++.+++|.++|+|+|||.|+||++||+|+|++++.++++++|+++.||+.+
T Consensus 3 s~~eil~P~~v~i~~~~~~~~k~~~eplErG~Gyt~gn~lr~~llSs~sPV~~V~y~Ve~~~~e~~t------------- 69 (105)
T d1bdfa1 3 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPPVERIAYNVEAARVEQRT------------- 69 (105)
T ss_dssp CSSCSCCCCEEEEEESSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCSEEEEEEECCBCCCSSCS-------------
T ss_pred cHhhhcCCCEEEEEecCCceEEEEEEEccCCcccccccccchhhhhcccceeEEEEeeeeeecCCCC-------------
Confidence 3567899998888888999999999999999999999999999999999999999999999999876
Q ss_pred ccccceeeeccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcCChHHHHHHHHHHHHHHhhhhh
Q psy8861 275 NLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFA 346 (550)
Q Consensus 275 NLK~i~~~~~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~~P~~Al~~Aa~iL~~~~~~f~ 346 (550)
+..++ .+.+...| ++ +|+||+.+||+||++||++|+
T Consensus 70 d~d~L----------~lei~TnG-------------------------si-~p~eA~~~Aa~il~~~~~~f~ 105 (105)
T d1bdfa1 70 DLDKL----------VIEMETNG-------------------------TI-DPEEAIRRAATILAEQLEAFV 105 (105)
T ss_dssp SEEEE----------EEEEEECS-------------------------SS-CHHHHHHHHHHHHHHHGGGGC
T ss_pred cceEE----------EEEEEeCC-------------------------CC-CHHHHHHHHHHHHHHHHHhhC
Confidence 11111 22222221 11 399999999999999999984
No 14
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus thermophilus [TaxId: 274]}
Probab=99.54 E-value=2.7e-15 Score=129.41 Aligned_cols=98 Identities=32% Similarity=0.546 Sum_probs=77.5
Q ss_pred CCeeEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHHhccccce
Q psy8861 201 KPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVI 280 (550)
Q Consensus 201 ~p~~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~IilNLK~i~ 280 (550)
.| .+.+.+.+..|++|+++|+++|||.|+||++||+++|++|+.+.++..|++ +..|.++|.-.++||+
T Consensus 8 ~p-~~~~~~~~~~y~~~v~~p~erG~g~~~gn~l~~il~ss~~PV~kV~y~Ve~------~rvg~~~d~dkL~LeI---- 76 (106)
T d1smya1 8 AP-VFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPPVRRVAFQVED------TRLGQRTDLDKLTLRI---- 76 (106)
T ss_dssp CC-CCEEEECSSSCEEEEEEEECTTHHHHHHHHHHHHHHHTCECEEEEEEEEEE------CCCSSCSCCEEEEEEE----
T ss_pred Cc-eEEEeecCCceeEEEeeccCCCcccccccccceeehhcCChhhEEEEEecc------cccCcccceeEEEEEE----
Confidence 44 356666788999999999999999999999999999999999999998884 5666666433222222
Q ss_pred eeeccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcCChHHHHHHHHHHHHHHhhhhhcc
Q psy8861 281 LKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAAL 348 (550)
Q Consensus 281 ~~~~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~~P~~Al~~Aa~iL~~~~~~f~~~ 348 (550)
...| +++ |+||+++||+||++||.+|.|+
T Consensus 77 -------------~TnG-------------------------si~-P~eAl~~Aa~il~~h~~~f~n~ 105 (106)
T d1smya1 77 -------------WTDG-------------------------SVT-PLEALNQAVEILREHLTYFSNP 105 (106)
T ss_dssp -------------EECS-------------------------SSC-HHHHHHHHHHHHHHHHHTSCSC
T ss_pred -------------EeCC-------------------------CCC-HHHHHHHHHHHHHHHHHhhcCC
Confidence 2111 122 9999999999999999999886
No 15
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=99.47 E-value=2.2e-14 Score=123.54 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=53.1
Q ss_pred hhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCchhh
Q psy8861 96 ESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQ 153 (550)
Q Consensus 96 E~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~~~~ 153 (550)
+||||+|||+++|++||+.|+++|.||||+|||+.+ +||+.|++||+|+|.......
T Consensus 4 ~mRlD~~L~~~r~~ktR~~A~~~i~~G~V~vNg~~v-Kps~~vk~GDvI~i~~~~~~~ 60 (104)
T d1dm9a_ 4 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 60 (104)
T ss_dssp CCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEE
T ss_pred cEeHHHHHHHhhhHhhHHHHHHHHHcCCeeeCCeec-cccccCCCCCEEEEEeCCeEE
Confidence 799999999999999999999999999999999987 799999999999998766543
No 16
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.24 E-value=2.7e-12 Score=99.17 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=50.4
Q ss_pred hhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 97 SRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 97 ~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
||||.+|...+++ ||.+|++||.+|+|+|||++|++|+|.|+++|.|++.++.
T Consensus 1 mRLdk~l~~~~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~dg~~ 53 (59)
T d1kska3 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNP 53 (59)
T ss_dssp EEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTEE
T ss_pred CcHHHHHHHcCCC-CHHHHHHHHHcCcEEECCEEeecCCcCcCCCCEEEECCEE
Confidence 7999999999988 9999999999999999999999999999999999998653
No 17
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.23 E-value=3.2e-12 Score=98.45 Aligned_cols=52 Identities=29% Similarity=0.294 Sum_probs=49.8
Q ss_pred hhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 97 SRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 97 ~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
||||.+|.+.+++ ||.+|++||.+|+|+|||+.+++|++.|++||.|++++.
T Consensus 2 mRLD~~Ls~~~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~g~ 53 (58)
T d1vioa2 2 LRLDKFIAENVGL-TRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE 53 (58)
T ss_dssp EEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE
T ss_pred cHHHHHHHHcCCC-CHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEECCE
Confidence 7999999999987 999999999999999999999999999999999999764
No 18
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=99.03 E-value=1.3e-11 Score=100.79 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=52.1
Q ss_pred HhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 95 LESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 95 LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
...|||.+|+.+|++.||.+|++||.+|+|+|||+++++|++.|.+||+|+|.+.
T Consensus 19 ~~irL~k~L~~~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vdG~ 73 (79)
T d1p9ka_ 19 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 (79)
T ss_dssp SCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred CcEEHHHHHHHCCCccCHHHHHHHHHhCCcccCCEEeccccccCCCCCEEEECCE
Confidence 3479999999999999999999999999999999999999999999999999754
No 19
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.80 E-value=1.7e-05 Score=69.92 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=73.5
Q ss_pred EEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCc-ccc-cccccCccccHHHHHhccccceee
Q psy8861 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA-LHE-YSSLEGVQEDIIDIILNLKGVILK 282 (550)
Q Consensus 205 i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv-~hE-fs~i~Gv~Edv~~IilNLK~i~~~ 282 (550)
|++.+.+++..+|.++ |.-.+++|||||+|||++|.+++..+-.+|. .|- |... +|..+ ... +
T Consensus 6 i~i~~~~~~~~~F~l~----~~d~s~ANalRRi~iaeV~t~v~feyDp~N~lrHtdyw~e----~~~~~------ewP-~ 70 (135)
T d1twfc1 6 VKIREASKDNVDFILS----NVDLAMANSLRRVMIAEIAAAIEFEYDPWNKLKHTDYWYE----QDSAK------EWP-Q 70 (135)
T ss_dssp CCCSCCCSSEECCEEB----SSCHHHHHHHHHHHHHCCEEEEEEEECSSTTSCCSCCCCS----SCHHH------HSC-C
T ss_pred EEEEEcCCCEEEEEEe----CCCHHHHHHHHHHHHHhhhhheeeeecccccccceeeccc----CCccc------cCC-c
Confidence 6777778899999999 8888999999999999999999988877654 341 1100 11111 000 0
Q ss_pred eccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcCC-----hHHHHHHHHHHHHHHhhhhhc
Q psy8861 283 LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSD-----NEEAIRQSARVLVDQLNVFAA 347 (550)
Q Consensus 283 ~~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~~-----P~~Al~~Aa~iL~~~~~~f~~ 347 (550)
++. + .++..-.-+.. .+.+ .-||+.|+++.. |++.+.+|.++|+.-+.-|..
T Consensus 71 s~~-~--------~~e~~~~e~e~-fd~~---akpd~F~f~VEs~G~l~p~~Iv~~ai~iL~~Kl~~l~~ 127 (135)
T d1twfc1 71 SKN-C--------EYEDPPNEGDP-FDYK---AQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILL 127 (135)
T ss_dssp CGG-G--------TTSCCCCSSSC-CCTT---CCCCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-C--------CCCCCcccccC-CCCC---CCCCEEEEEEEeccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000000000 1111 148999999865 999999999999998887753
No 20
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.78 E-value=8.2e-06 Score=63.27 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=50.7
Q ss_pred cccccc---CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 370 RPVDDL---ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 370 ~~I~~L---~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+||++| +++..+.+-|+.||++||.+|...|.+||.++++||++..+.|.+.-.+
T Consensus 1 ~pi~~L~~~Gig~~~~~kL~~aG~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k 58 (64)
T d1szpa1 1 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 58 (64)
T ss_dssp CCGGGGCCTTCCHHHHHHHHTTSCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHhHCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 478888 4899999999999999999999999999999999999999999987765
No 21
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=97.67 E-value=2.1e-05 Score=63.50 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=47.5
Q ss_pred hhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccCc
Q psy8861 97 SRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKA 150 (550)
Q Consensus 97 ~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~~ 150 (550)
..|..++...||++|..+||.+|..|-|.|||++|+.|.+.+.++|.+-++-..
T Consensus 18 i~l~~ll~~~gl~~S~searRlI~~g~V~iN~~ki~d~~~~l~~~~~~il~~GK 71 (81)
T d1h3fa2 18 IWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGK 71 (81)
T ss_dssp EEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEEEETT
T ss_pred ccHHHHHHHcCCCcCHHHHHHHHHcCCEEECCEEecCccceecCCCeEEEEecC
Confidence 356777889999999999999999999999999999999999998876665443
No 22
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.43 E-value=2.7e-05 Score=61.34 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=50.3
Q ss_pred cccccc---CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 370 RPVDDL---ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 370 ~~I~~L---~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
.+|+.| +++....+-|+.||++||.+|+..|.+||+++++||+++.+.|.+...+
T Consensus 8 ~~i~~L~~~Gig~~~i~kL~~aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k 65 (70)
T d1b22a_ 8 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 65 (70)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred ccHHHHhhCCCCHHHHHHHHHcCcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456666 7899999999999999999999999999999999999999999988765
No 23
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.06 E-value=0.00032 Score=58.29 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred HHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCC
Q psy8861 102 VVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGD 142 (550)
Q Consensus 102 ~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gD 142 (550)
++...|+++|..+||.+|..|-|.|||++|+.|.+.+.++|
T Consensus 37 ll~~~~l~~S~seaRrlI~~ggv~iN~~kv~d~~~~l~~~~ 77 (99)
T d1jh3a_ 37 LLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEH 77 (99)
T ss_dssp HHHHHTSCCSHHHHHHHHHSTTEEETTEECCSTTTCCSSTT
T ss_pred HHHHcCCCcCHHHHHHHHHcCCEEECCEEecCcccccCHhH
Confidence 35689999999999999999999999999999999998876
No 24
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=95.95 E-value=0.0026 Score=48.04 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=45.3
Q ss_pred CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 376 ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 376 ~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++......-|..+|+.|+.+|...|.+||.+++++|++..+.|.+..++
T Consensus 8 GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~ 56 (61)
T d1pzna1 8 GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARK 56 (61)
T ss_dssp TCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 6677888899999999999999999999999999999999999988765
No 25
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=95.67 E-value=0.023 Score=46.70 Aligned_cols=43 Identities=21% Similarity=0.136 Sum_probs=35.2
Q ss_pred eEEEEeeCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEE
Q psy8861 204 IIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVI 251 (550)
Q Consensus 204 ~i~v~~~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vk 251 (550)
.++|.+.++++..|.+. |.++|+||+||..|+.. |+.-..+-+
T Consensus 4 ~ikvi~~~~n~~~~~i~----~EdHTlgn~L~~~L~~~-~~V~fagY~ 46 (99)
T d1xppa_ 4 SLRVISKEKNSITVEMI----NYDNTLLRTLVEEILKD-DQVDEARYY 46 (99)
T ss_dssp EEEEEEECSSEEEEEEE----SCCHHHHHHHHHHHTTC-TTEEEEEEE
T ss_pred eEEEEecCCCEEEEEEe----CCCchHHHHHHHHHhcC-CCeeEEEEe
Confidence 57888899999999999 99999999999999974 554433333
No 26
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=95.28 E-value=0.007 Score=45.49 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=42.1
Q ss_pred CchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 377 LTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 377 LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+......-|.++|+.|+.+|...|.+||.++++||++..+.|.+..++
T Consensus 7 IG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~ 54 (60)
T d2i1qa1 7 VGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 54 (60)
T ss_dssp CCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 344555679999999999999999999999999999999999887764
No 27
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.76 E-value=0.16 Score=42.55 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=56.1
Q ss_pred EEEEe--eCCcEEEEEEeeCccchhhhHHHHHHHHHhhcCccceeEEEEECCcccccccccCccccHHHHHhccccceee
Q psy8861 205 IDVKT--LGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILK 282 (550)
Q Consensus 205 i~v~~--~~~~y~~F~i~Ple~G~g~TlgNaLRRvLLssi~G~AI~~vkI~gv~hEfs~i~Gv~Edv~~IilNLK~i~~~ 282 (550)
+++.. ...+...|.+. |..+||||+||..|+.. |+....+-++++-.
T Consensus 19 i~i~~~~~~~n~~~~~i~----~EdhTlGnlL~~~L~~~-~~V~fagY~~pHPl-------------------------- 67 (114)
T d1twfk_ 19 LKIDPDTKAPNAVVITFE----KEDHTLGNLIRAELLND-RKVLFAAYKVEHPF-------------------------- 67 (114)
T ss_dssp CCEEECSSSTTEEEEEEE----SCCHHHHHHHHHHHTTC-TTEEEEEEECSCTT--------------------------
T ss_pred EEEEecCCCCceEEEEEe----CCCchHHHHHHHHHhcC-CCceEEEeecCCCC--------------------------
Confidence 44443 45799999999 99999999999999964 44444444443221
Q ss_pred eccCceEEEEEEEeceeeEEeccCccCCCeEEeCCCceEEEcCChHHHHHHHHHHHHHHhhhhhc
Q psy8861 283 LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAA 347 (550)
Q Consensus 283 ~~~~~~~~~~l~~~Gp~~V~A~DI~~~~~veivnpd~~IatL~~P~~Al~~Aa~iL~~~~~~f~~ 347 (550)
.....+++...+- .+|.+||..|++-|++.++.+.+
T Consensus 68 ---~~~i~irI~t~~~--------------------------~~p~~~l~~a~~~l~~~~~~l~~ 103 (114)
T d1twfk_ 68 ---FARFKLRIQTTEG--------------------------YDPKDALKNACNSIINKLGALKT 103 (114)
T ss_dssp ---SCEEEEEEEECTT--------------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCeeEEEEEeCCC--------------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 1223444443321 24899999999999988887643
No 28
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=87.98 E-value=0.071 Score=45.49 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=52.2
Q ss_pred ccceeEEEEECC---------cccccccccCccccHHHHHhccccceeeec-------cCceEEEEEEEec----eeeEE
Q psy8861 243 IGCAPTEVIISG---------ALHEYSSLEGVQEDIIDIILNLKGVILKLY-------NRDYAILNLKKFG----KCVVL 302 (550)
Q Consensus 243 ~G~AI~~vkI~g---------v~hEfs~i~Gv~Edv~~IilNLK~i~~~~~-------~~~~~~~~l~~~G----p~~V~ 302 (550)
|.+||..|.|.. ..|.++.||-..+| ...+.+... ..+.+.+.|++++ +..||
T Consensus 1 PtlAid~V~I~~NTS~l~DE~iaHRLglIPi~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~L~v~~~~~~~~~V~ 73 (131)
T d1twfc2 1 PTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMD-------IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVY 73 (131)
T ss_dssp CEEEEEEEEEEEECSSSCHHHHHHHHHTSCEEETT-------GGGSCCTTTSSSSSCCTTTEEEEEEEEECCSSSCEEEE
T ss_pred CeEEEEEEEEEECCcccchHHHHHhhcCceeeccC-------hhhccccccccccCCCCCceEEEEeEcccCCCCCceEE
Confidence 789999999952 68999999976543 222323221 2467889999887 56899
Q ss_pred eccCccCCC-----------eEEeCCCceEEEcCC
Q psy8861 303 ASDIELLSD-----------IELVNPNHIIAHLSD 326 (550)
Q Consensus 303 A~DI~~~~~-----------veivnpd~~IatL~~ 326 (550)
+.||++-++ ....+++.+|+.|..
T Consensus 74 s~Dl~~~~~~~~~~~~~~~~~~~~~~~IlI~kL~p 108 (131)
T d1twfc2 74 SKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRK 108 (131)
T ss_dssp GGGEEECSCCTTCSEEEECCCSTTSCCSEEEEECT
T ss_pred hhheEEcCCccccccCCccccCCcCCCCEEEEeCC
Confidence 999974221 123456788888863
No 29
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=86.89 E-value=0.24 Score=36.18 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=37.1
Q ss_pred hhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 379 VRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 379 vRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
+++..-++.- .++.++..-|.+||.+++++|.+-.++|.+.|+
T Consensus 13 ~~a~~L~~~F--~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~ 55 (56)
T d1kfta_ 13 KRRQMLLKYM--GGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 55 (56)
T ss_dssp SHHHHHHHHH--SCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHc
Confidence 4566666664 499999999999999999999999999999875
No 30
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=86.05 E-value=0.27 Score=37.14 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=37.3
Q ss_pred hhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 380 RSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 380 Rs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++.+-++. ..|+.++.+-|.+||.+++++|.+..+.|.+.+.+
T Consensus 22 ~a~~L~~~--f~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~~~~ 64 (68)
T d1x2ia1 22 LARRLLKH--FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 64 (68)
T ss_dssp HHHHHHHH--HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHH--cCCHHHHHHhHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55565555 56999999999999999999999999999999874
No 31
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=84.91 E-value=0.3 Score=43.90 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=55.1
Q ss_pred CCchhhhhhhhccC-ccchHHHhhcCHHHhhccCccccccHHHHHHHHHh-cCccccc--cccccccCCCChH
Q psy8861 376 ELTVRSANCLKAEN-IHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS-RGKYYMR--HRHGFRKLNRTSS 444 (550)
Q Consensus 376 ~LsvRs~NcLk~a~-I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~-~gl~lmr--hrk~~rklgr~~~ 444 (550)
+|+-.+.+-|-.+| |+++.||-.++.+||+.+++||+||.+-+.+.++. ....|-+ ..-+.+..|+..+
T Consensus 48 GlG~~~i~~L~~~g~i~~~~Dly~L~~~~l~~l~~~g~ksa~nl~~~Ie~sk~~~l~r~l~aLGI~~vG~~~A 120 (181)
T d1dgsa1 48 GLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLA 120 (181)
T ss_dssp TCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHH
T ss_pred HHHHHHHHHHhhcCCcchhhhhhhhhhHHHhcccccchHHHHHHHHHHHhhcchhHHHHHHHHHhhhhhHHHH
Confidence 56667888899999 69999999999999999999999999999998874 4555543 3345677776444
No 32
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
Probab=82.80 E-value=0.66 Score=42.87 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=39.2
Q ss_pred ccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHH
Q psy8861 369 LRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419 (550)
Q Consensus 369 ~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~ 419 (550)
.+||++| ++.-++..-|++.||+|++||.+++.++|.+ -||..--..+.
T Consensus 177 ~lpl~~l~GiG~~~~~~L~~~Gi~t~gdl~~~~~~~L~~--~fG~~~g~~l~ 226 (240)
T d1jx4a2 177 ELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKG--MIGEAKAKYLI 226 (240)
T ss_dssp HSBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHH--HHCHHHHHHHH
T ss_pred ccchhhcCCCCHHHHHHHHHhCCCcHHHHHcCCHHHHHH--HHCHHHHHHHH
Confidence 4889988 6788888999999999999999999999864 47754334443
No 33
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.74 E-value=0.54 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.8
Q ss_pred ccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 390 IHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 390 I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
..|+.+|.+-+.+||.+++++|.+..+.|.+.|++
T Consensus 39 F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f~~ 73 (78)
T d2a1jb1 39 FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (78)
T ss_dssp HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred hCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHHcC
Confidence 66999999999999999999999999999999874
No 34
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=81.13 E-value=0.5 Score=35.67 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=37.7
Q ss_pred hhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 379 VRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 379 vRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+++.+-++.- .++.++.+-|.+||.+++++|.+-.++|.+.|++
T Consensus 24 ~~a~~L~~~F--~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~~~ 67 (70)
T d2bgwa1 24 RTAERILERF--GSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 67 (70)
T ss_dssp HHHHHHHHHH--SSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHh--CCHHHHHHcCHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 3666666664 4899999999999999999999999999998864
No 35
>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}
Probab=79.56 E-value=0.48 Score=36.15 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=48.8
Q ss_pred ccccccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 368 LLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 368 l~~~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+++.++.|++.-=....|-..|..||.++...+.+||+.|.+|-..-.+|+++.=++
T Consensus 5 ~~~F~~~LdVDe~lA~lLv~EGF~siEeIAyv~~~eL~~IegfDee~a~eL~~RA~~ 61 (68)
T d1u9la_ 5 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHhccCcHHHHhcCCHHHHHHhcccCHHHHHHHHHHHHH
Confidence 345677788877788899999999999999999999999999998888888776443
No 36
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.21 E-value=1.5 Score=38.20 Aligned_cols=94 Identities=10% Similarity=0.128 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCCCCcc-------ccCccccccCCccccccccc-CCchhhhhhhhccCccchHHHhh
Q psy8861 327 NEEAIRQSARVLVDQLNVFAALENTPVKK-------ELDSSLEKVDPILLRPVDDL-ELTVRSANCLKAENIHCIGDLIQ 398 (550)
Q Consensus 327 P~~Al~~Aa~iL~~~~~~f~~~~~~~~~~-------~~~~~~~~~~~~l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~ 398 (550)
-...+..|.+|+...+............. ......-+. +-|+-+| .++.-...-|++.||.|++||.+
T Consensus 73 ~~~I~~~~~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~----~~~L~Qlp~~~~~~~~kl~~~~i~sl~~l~~ 148 (176)
T d2q0zx1 73 TEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK----DSYLKQLPHFTSEHIKRCTDKGVESVFDIME 148 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTT----SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC----CCCccCCCcCCHHHHHHHHHCCCCCHHHHHh
Confidence 45677788888888877765443211110 000000000 1123334 25666677789999999999999
Q ss_pred cCHHHhhccCccccccHHHHHHHHHh
Q psy8861 399 RSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 399 ~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
++++|+..+-|++..-.++|.+.+..
T Consensus 149 ~~~~e~~~ll~~~~~~~~~i~~~~~~ 174 (176)
T d2q0zx1 149 MEDEERNALLQLTDSQIADVARFCNR 174 (176)
T ss_dssp SCHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999888888887764
No 37
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.83 E-value=1.4 Score=32.25 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHHh
Q psy8861 376 ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 376 ~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
+++......|- ....++.+|.+.|.+||.++.+ |++..+.|.+.|++
T Consensus 10 GIg~~~~~~Ll-~~f~Si~~l~~As~~eL~~v~G-~~~~A~~i~~f~~~ 56 (62)
T d2a1ja1 10 GVNAKNCRSLM-HHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 56 (62)
T ss_dssp TCCHHHHHHHH-HHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHH-HHhccHHHHHhCCHHHHHHCcC-cHHHHHHHHHHHhh
Confidence 45556666665 4788999999999999999999 99999999998863
No 38
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=64.68 E-value=0.81 Score=41.60 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=34.3
Q ss_pred hhhhhhhhccCccchHHHhhcCHHHhhcc-CccccccHHHHHHH
Q psy8861 379 VRSANCLKAENIHCIGDLIQRSENELLRT-PNLGRKSLNEIKEI 421 (550)
Q Consensus 379 vRs~NcLk~a~I~tv~dL~~~s~~dL~~~-~n~G~kSl~Ei~~~ 421 (550)
+|+. .|-++||+|+.||...+++.+..+ +++|+|.+++|+.+
T Consensus 155 ~rAr-~L~~~Gi~t~~dl~~a~~~~~~~~~~g~g~ki~~~i~~k 197 (198)
T d2p6ra2 155 VRAR-KLYNAGIRNAEDIVRHREKVASLIGRGIAERVVEGISVK 197 (198)
T ss_dssp HHHH-HHHTTTCCSHHHHHHTHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHcCCCCHHHHHHccHhhHHHHhcchHHHHHHHhccc
Confidence 4444 466799999999999998877777 89999999988643
No 39
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.04 E-value=2.8 Score=33.31 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.0
Q ss_pred cCcEEECcEEeccCCcccCCCCEEEEc
Q psy8861 121 HRAFLVNKKIVNIASYKIKPGDIISVR 147 (550)
Q Consensus 121 hG~V~VNg~~v~~ps~~vk~gDiI~v~ 147 (550)
...++|||++|+.+ ..++.||+|.+-
T Consensus 68 ~~gt~VNg~~i~~~-~~L~~gD~I~~G 93 (102)
T d2g1la1 68 GAETYVNGKLVTEP-LVLKSGNRIVMG 93 (102)
T ss_dssp TCCEEETTEECCSC-EECCTTCEEEET
T ss_pred CCCeEECCeEccce-eEcCCCCEEEEC
Confidence 34699999999765 789999999984
No 40
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.26 E-value=2.6 Score=39.30 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=35.5
Q ss_pred ccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHH
Q psy8861 371 PVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419 (550)
Q Consensus 371 ~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~ 419 (550)
||++| ++.-++...|++.||+|++||..++.++|.+. ||.+.-..+.
T Consensus 209 pv~~l~GiG~~~~~~L~~~GI~ti~dl~~~~~~~L~~~--fG~~~g~~l~ 256 (273)
T d1zeta2 209 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKE--LGISVAQRIQ 256 (273)
T ss_dssp SGGGSTTCCHHHHHHHHTTTCCSHHHHHHSCHHHHHHH--HHHHHHHHHH
T ss_pred chHHhcCCCHHHHHHHHHhCCCcHHHHhcCCHHHHHHH--HCHHHHHHHH
Confidence 57776 56668889999999999999999999888754 5544333343
No 41
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.37 E-value=3.8 Score=29.46 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=26.2
Q ss_pred cccCCchhhhhhhhccCccchHHHhhcCHHHhhc
Q psy8861 373 DDLELTVRSANCLKAENIHCIGDLIQRSENELLR 406 (550)
Q Consensus 373 ~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~ 406 (550)
+.|+|+ +=..+..++|+.|+.++..+|++||..
T Consensus 7 ~~lgL~-~Y~~~F~~~G~~~l~~l~~lt~eDL~~ 39 (57)
T d1dxsa_ 7 TGLGCP-NCIEYFTSQGLQSIYHLQNLTIEDLGA 39 (57)
T ss_dssp HHTTCT-TSHHHHHTTTCCCHHHHHTCCHHHHHH
T ss_pred HHCCcH-HHHHHHHHccCCcHHHHHHhhHHHHHH
Confidence 345555 334678999999999999999999865
No 42
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.60 E-value=4.6 Score=31.63 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=21.4
Q ss_pred CcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 122 RAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 122 G~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
+-++|||+.+..| +.+++||+|.|-.
T Consensus 65 ng~~vNg~~l~~~-~~L~~Gd~I~iG~ 90 (98)
T d2affa1 65 NPTQVNGSVIDEP-VRLKHGDVITIID 90 (98)
T ss_dssp SCCEETTEECSSC-EEECTTCEEEETT
T ss_pred ccceECCEECCCc-eECCCCCEEEECC
Confidence 3478999999665 6799999999953
No 43
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.26 E-value=6.4 Score=37.89 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=37.9
Q ss_pred cccccccc-CCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHH
Q psy8861 368 LLRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEI 421 (550)
Q Consensus 368 l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~ 421 (550)
-.+||.+| ++.-++...|+..||+|++||.+ .++.|.+. ||+++-.-+.+.
T Consensus 273 ~~lpi~~i~GiG~~~~~~L~~~gi~ti~dl~~-~~~~l~~~--fG~~~g~~l~~~ 324 (333)
T d1t94a2 273 KDLPIRKVSGIGKVTEKMLKALGIITCTELYQ-QRALLSLL--FSETSWHYFLHI 324 (333)
T ss_dssp TTCBGGGCTTSCHHHHHHHHHTTCCBHHHHHH-THHHHHHH--SCHHHHHHHHHH
T ss_pred hCCCccccCCcCHHHHHHHHHcCCcCHHHHhc-CHHHHHHH--hCHHHHHHHHHH
Confidence 34788886 57888999999999999999998 45554444 898775545443
No 44
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=39.50 E-value=5.6 Score=34.34 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=29.6
Q ss_pred cccccccc-CCchhhhhhhhccCccchHHHhhcCH
Q psy8861 368 LLRPVDDL-ELTVRSANCLKAENIHCIGDLIQRSE 401 (550)
Q Consensus 368 l~~~I~~L-~LsvRs~NcLk~a~I~tv~dL~~~s~ 401 (550)
|+.+|+.| +..-+....|++.||+|++||+.+=.
T Consensus 8 l~~~i~~lkGvGpk~~~~L~klgI~ti~DLL~~~P 42 (180)
T d1gm5a2 8 LSTDIQYAKGVGPNRKKKLKKLGIETLRDLLEFFP 42 (180)
T ss_dssp SCCCSSSSSSCCHHHHHHHHTTTCCSSGGGTSCCC
T ss_pred CCCChhhcCCcCHHHHHHHHHhCCCcHHHHHHhCc
Confidence 56788888 48889999999999999999998765
No 45
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}
Probab=39.40 E-value=11 Score=27.41 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.1
Q ss_pred cEEECcEEecc---CCcccCCCCEEEEc
Q psy8861 123 AFLVNKKIVNI---ASYKIKPGDIISVR 147 (550)
Q Consensus 123 ~V~VNg~~v~~---ps~~vk~gDiI~v~ 147 (550)
-|-||++.|.+ +++.++.||.|+|-
T Consensus 32 aV~vN~~ivpk~~~~~~~L~~gD~ieIv 59 (65)
T d1zud21 32 ALAINQQIVPREQWAQHIVQDGDQILLF 59 (65)
T ss_dssp EEEETTEECCGGGTTTCBCCTTCEEEEE
T ss_pred EEEECCEEcCHHHHhhccCCCCCEEEEE
Confidence 47899999977 57899999999874
No 46
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=38.62 E-value=6.8 Score=30.83 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=20.3
Q ss_pred cEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
-++|||+++.. .+.+++||+|.|-+
T Consensus 66 Gt~vNg~~i~~-~~~L~~Gd~i~iG~ 90 (99)
T d2ff4a3 66 GVHVQHERIRS-AVTLNDGDHIRICD 90 (99)
T ss_dssp CCEETTEECSS-EEEECTTCEEEETT
T ss_pred CCeECCEEcCC-ceECCCCCEEEECC
Confidence 37899999965 46789999999854
No 47
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=37.98 E-value=13 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred EEECcEEeccC---CcccCCCCEEEEc
Q psy8861 124 FLVNKKIVNIA---SYKIKPGDIISVR 147 (550)
Q Consensus 124 V~VNg~~v~~p---s~~vk~gDiI~v~ 147 (550)
|-+||..|.+. ++.++.||.|+|-
T Consensus 32 V~vN~~ivpr~~~~~~~l~~gD~iEIv 58 (63)
T d2cu3a1 32 VLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (63)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred EEECCEEcCHHHcCcccCCCCCEEEEE
Confidence 77999999776 7789999999873
No 48
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.63 E-value=5.5 Score=35.00 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.7
Q ss_pred eEEeccCccCCCeEEe-CCCceEEEcCCh
Q psy8861 300 VVLASDIELLSDIELV-NPNHIIAHLSDN 327 (550)
Q Consensus 300 ~V~A~DI~~~~~veiv-npd~~IatL~~P 327 (550)
.++.+||..|++++++ +||..||++..|
T Consensus 146 ~i~v~Dl~lp~gv~~~~d~~~~v~~V~~p 174 (175)
T d2zjrs1 146 HITAGDIKLPEGCTLAADPELTVVSVLPP 174 (175)
T ss_dssp EEETTTSCCSTTCCCCSCTTCEEEEEECC
T ss_pred eEEEEeecCCCCcEEccCCCcEEEEEeCC
Confidence 7999999999999988 679999998654
No 49
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}
Probab=36.25 E-value=11 Score=28.28 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=34.4
Q ss_pred cccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHH
Q psy8861 371 PVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422 (550)
Q Consensus 371 ~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L 422 (550)
-++.|+|+- =..++.++||.++.+|+.++++||.+ +|-++....+..|
T Consensus 14 WL~~lgL~~-Y~~~F~~~g~~~~~~l~~l~~~dL~~---lGI~~~ghr~kil 61 (78)
T d1x40a1 14 FLMSINLEQ-YLLHFHESGFTTVKDCAAINDSLLQK---IGISPTGHRRRIL 61 (78)
T ss_dssp HHHTTTCGG-GHHHHHHHTCCBSGGGGGCCHHHHHH---HTCCCHHHHHHHH
T ss_pred HHHHCchHH-HHHHHHHcCCCCHHHHHHCCHHHHHH---cCCCCHHHHHHHH
Confidence 456677764 34678999999999999999999754 4555555444433
No 50
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=34.28 E-value=15 Score=32.04 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=33.2
Q ss_pred hhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 383 NCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 383 NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
.-|-+. ..++.+|...+.+||.+++++|.+..+.|.+-++
T Consensus 121 k~La~~-f~sl~~l~~as~eeL~~I~GIG~~~A~si~~ff~ 160 (181)
T d1dgsa1 121 RNLARR-FGTMDRLLEASLEELIEVEEVGELTARAILETLK 160 (181)
T ss_dssp HHHHHT-TSBHHHHTTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHH-hhhhhhhhhhHHHHHhhcCCcCHHHHHHHHHHHC
Confidence 334443 7799999999999999999999999888887664
No 51
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=30.72 E-value=23 Score=26.70 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=21.9
Q ss_pred cEEECcEEec---cCCcccCCCCEEEEccC
Q psy8861 123 AFLVNKKIVN---IASYKIKPGDIISVREK 149 (550)
Q Consensus 123 ~V~VNg~~v~---~ps~~vk~gDiI~v~~~ 149 (550)
.|.|||+.+. .....|+.||.|.|-+.
T Consensus 54 ~i~vng~~i~~~~~~~~~l~~gdeV~i~Pp 83 (87)
T d1v8ca1 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (87)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred EEEEcCeeeecccCCcccCCCCCEEEEECC
Confidence 3889999886 46888999999987553
No 52
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.49 E-value=23 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=32.2
Q ss_pred ccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHH
Q psy8861 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419 (550)
Q Consensus 372 I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~ 419 (550)
++.++|+- =..+...+||.++.+|+.++++||.. +|-.+.-..+
T Consensus 14 L~~lgL~q-Y~~~F~~~gi~~~~~L~~lt~~dL~~---lGI~~~ghr~ 57 (81)
T d1ucva_ 14 LDSIRMGR-YRDHFAAGGYSSLGMVLRMNAQDVRA---LGITLMGHQK 57 (81)
T ss_dssp HHHTTCGG-GHHHHHHTTCCBHHHHTTCCHHHHHH---HTCCCHHHHH
T ss_pred HHHCccHH-HHHHHHHcCCchHHHHHhCCHHHHHH---cCCCCHHHHH
Confidence 44577774 34678999999999999999999854 5655544333
No 53
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=27.99 E-value=17 Score=27.67 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=31.4
Q ss_pred hhhhhhccCccchHHHhhc-CHHHhhccCccccccHHHHHHHHH
Q psy8861 381 SANCLKAENIHCIGDLIQR-SENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 381 s~NcLk~a~I~tv~dL~~~-s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
|.++|...+...+.+.+.- ..+-|.++|++|+|..+-|.--|+
T Consensus 22 Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk 65 (78)
T d1cuka2 22 ALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMK 65 (78)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHccCHHHhhcCCCCCHHHHHHHHHHHH
Confidence 4567777777777775544 446677999999999987766655
No 54
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.00 E-value=15 Score=27.39 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.0
Q ss_pred HHHhhccCccccccHHHHHHHHHh
Q psy8861 401 ENELLRTPNLGRKSLNEIKEILAS 424 (550)
Q Consensus 401 ~~dL~~~~n~G~kSl~Ei~~~L~~ 424 (550)
.+|+.++||+|++..+-|.+.|..
T Consensus 45 ~~~l~~lpGiG~~i~~kI~Eil~t 68 (76)
T d2bcqa1 45 YQEACSIPGIGKRMAEKIIEILES 68 (76)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHhcCCCccHHHHHHHHHHHHh
Confidence 457899999999988888888763
No 55
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Probab=26.18 E-value=27 Score=25.19 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.4
Q ss_pred cEEECcEEecc---CCcccCCCCEEEEc
Q psy8861 123 AFLVNKKIVNI---ASYKIKPGDIISVR 147 (550)
Q Consensus 123 ~V~VNg~~v~~---ps~~vk~gDiI~v~ 147 (550)
-|-+||..|.+ +++.++.||.|+|-
T Consensus 33 AVevN~~iv~k~~~~~~~L~~gD~IEIv 60 (65)
T d1tygb_ 33 IVERNKEIIGKERYHEVELCDRDVIEIV 60 (65)
T ss_dssp EEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred EEEECCEEcCHHHcCcccCCCCCEEEEE
Confidence 37799998855 67789999999873
No 56
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.10 E-value=22 Score=26.34 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=34.7
Q ss_pred cccccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHH
Q psy8861 371 PVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422 (550)
Q Consensus 371 ~I~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L 422 (550)
-++.++|+- =..++.+.||.++.+|..++++||.. +|-.+....+..|
T Consensus 18 WL~~lgL~~-Y~~~F~~~g~~~~~~l~~l~~~dL~~---lGI~~~~hr~kil 65 (78)
T d1v38a_ 18 FLERIHLQE-YTSTLLLNGYETLDDLKDIKESHLIE---LNIADPEDRARLL 65 (78)
T ss_dssp HHHTTTCGG-GHHHHHHHTCCBHHHHTTCCHHHHHH---TTTCCHHHHHHHH
T ss_pred HHHHCCHHH-HHHHHHHcCccchHHHccCCHHHHhH---cCCCCHHHHHHHH
Confidence 356678876 44778899999999999999999753 5655554444333
No 57
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=25.81 E-value=28 Score=26.00 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHhhhhhHHHHHcCCCCCHHHHHHHHHcCcEEECcEEeccCCcccCCCCEEEEccC
Q psy8861 84 KGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149 (550)
Q Consensus 84 ~g~~~~~ll~~LE~RLD~~l~r~gfa~Sr~~ArqlI~hG~V~VNg~~v~~ps~~vk~gDiI~v~~~ 149 (550)
.+.|-..|+..|..|-..+- +.-|... ..+..+=.|.|||+.++ .++.++.||.|.+=++
T Consensus 27 ~~~Tv~~l~~~L~~~~~~~~-~~l~~~~----~~~~~~i~iavN~~~~~-~d~~L~~gDevai~PP 86 (88)
T d1vjka_ 27 EGARVRDLIEEIKKRHEKFK-EEVFGEG----YDEDADVNIAVNGRYVS-WDEELKDGDVVGVFPP 86 (88)
T ss_dssp TTCBHHHHHHHHHHHCGGGG-GSCBCSS----SCTTSSBEEEETTBCCC-TTCBCCTTCEEEEESC
T ss_pred CCCCHHHHHHHHHHHChHHH-HHhhhcc----ccccccEEEEEcceEcC-CCcCcCCCCEEEEeCC
Confidence 35566777777766654321 1111100 01111225789999995 7899999999988553
No 58
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.23 E-value=31 Score=24.22 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=32.9
Q ss_pred cccCCchhhhhhhhccCccchHHHhhcCHHHhhccCccccccHHHHHHHHH
Q psy8861 373 DDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 373 ~~L~LsvRs~NcLk~a~I~tv~dL~~~s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
++++|+- =.....++|..+..+|+.++++||.. +|-.++..-+..|+
T Consensus 8 ~~lgL~~-Y~~~F~~~~~i~~~~l~~l~~~dL~~---lGI~~~ghr~ril~ 54 (60)
T d1ow5a_ 8 EEIGCTQ-YLDSFIQCNLVTEEEIKYLDKDILIA---LGVNKIGDRLKILR 54 (60)
T ss_dssp HHHSCTH-HHHHHHHHTCCCHHHHHHCCHHHHHH---HTCCCHHHHHHHHH
T ss_pred HHCcCHH-HHHHHHHcCCCcHHHHHhCCHHHHHH---cCCCCHHHHHHHHH
Confidence 4456652 33556778999999999999999854 67666655554443
No 59
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.79 E-value=16 Score=28.57 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.4
Q ss_pred HHhhccCccccccHHHHHHHHH
Q psy8861 402 NELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 402 ~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
+|+..+||+|++..+-|.+.|+
T Consensus 62 ~~l~~i~GIGk~i~~kI~Eil~ 83 (95)
T d1jmsa1 62 KDTEGIPCLGDKVKSIIEGIIE 83 (95)
T ss_dssp GGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHH
Confidence 5789999999999999988885
No 60
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=23.66 E-value=22 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=32.1
Q ss_pred hhhhhhccCccchHHHhhc-CHHHhhccCccccccHHHHHHHHH
Q psy8861 381 SANCLKAENIHCIGDLIQR-SENELLRTPNLGRKSLNEIKEILA 423 (550)
Q Consensus 381 s~NcLk~a~I~tv~dL~~~-s~~dL~~~~n~G~kSl~Ei~~~L~ 423 (550)
|.++|...+...+-+.+.- ..+-|.+++++|+|+.+.|.-.|+
T Consensus 23 Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eLk 66 (73)
T d1ixra1 23 ALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 66 (73)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHccHHHHHHHHHhcCHHHhhcCCCCCHHHHHHHHHHHH
Confidence 3466766666666665544 556677999999999999987775
No 61
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.27 E-value=18 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.5
Q ss_pred cEEECcEEeccC-CcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNIA-SYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~p-s~~vk~gDiI~v~~ 148 (550)
-++|||+++.+- .+.++.||+|++-.
T Consensus 76 GT~vN~~~i~~~~~~~L~~gD~I~ig~ 102 (116)
T d1gxca_ 76 GTFVNTELVGKGKRRPLNNNSEIALSL 102 (116)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESS
T ss_pred CceECCEEcCCCCEEECCCCCEEEECC
Confidence 388999998664 57899999999964
No 62
>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]}
Probab=22.34 E-value=18 Score=31.70 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=33.8
Q ss_pred cceeeeccC-ceEEEEEEEec--e-eeEEeccCccCCCeEEe-CCCceEEEcCChH
Q psy8861 278 GVILKLYNR-DYAILNLKKFG--K-CVVLASDIELLSDIELV-NPNHIIAHLSDNE 328 (550)
Q Consensus 278 ~i~~~~~~~-~~~~~~l~~~G--p-~~V~A~DI~~~~~veiv-npd~~IatL~~P~ 328 (550)
.|.++.... =|-.+.+++++ . ..++.+||.+|++|+++ +|+..|+++..|+
T Consensus 123 ~i~v~~~p~~IPe~i~VDvs~L~igd~i~v~Dl~lp~gv~~~~d~~~~vv~v~~p~ 178 (185)
T d1feua_ 123 DILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPE 178 (185)
T ss_dssp EEEEEECGGGCCSCEEEECTTCCTTEEEEGGGSCCCTTCEESSCTTCEEEEEECSS
T ss_pred eeEEEeeccCCCeEEEEEcccCCCCCeEEEEeecCCCCcEEccCCCCeEEEEeCCC
Confidence 344444322 13344444443 2 37999999999999876 6788999987664
No 63
>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.22 E-value=23 Score=27.64 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.5
Q ss_pred cEEECcEEecc---CCcccCCCCEEEEcc
Q psy8861 123 AFLVNKKIVNI---ASYKIKPGDIISVRE 148 (550)
Q Consensus 123 ~V~VNg~~v~~---ps~~vk~gDiI~v~~ 148 (550)
.|+|||+-+.. ..+.|+.||.|.+=+
T Consensus 68 ~v~vN~~di~~l~gl~t~l~dgDeV~~~p 96 (101)
T d1xo3a_ 68 LVLINDADWELLGELDYQLQDQDSILFIS 96 (101)
T ss_dssp EEEETTEEHHHHTTTSCCCCTTCEEEEEE
T ss_pred EEEEcCcceeccCCCccCcCCCCEEEEeC
Confidence 58899998765 579999999999854
No 64
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.60 E-value=21 Score=28.38 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.4
Q ss_pred cCHHHhhccCccccccHHHHHHHHHhc
Q psy8861 399 RSENELLRTPNLGRKSLNEIKEILASR 425 (550)
Q Consensus 399 ~s~~dL~~~~n~G~kSl~Ei~~~L~~~ 425 (550)
.|-+||++++++|.+.++-|+.-|..+
T Consensus 50 ~s~edL~~V~GIg~~~~e~lk~yl~~f 76 (98)
T d2axtu1 50 ESVEDVLNIPGLTERQKQILRENLEHF 76 (98)
T ss_dssp SSGGGGGGCTTCCTTHHHHHHHHGGGE
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHhcc
Confidence 355789999999999999999877543
No 65
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.41 E-value=21 Score=28.26 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=21.2
Q ss_pred CcEEECcEEeccCCcccCCCCEEEEcc
Q psy8861 122 RAFLVNKKIVNIASYKIKPGDIISVRE 148 (550)
Q Consensus 122 G~V~VNg~~v~~ps~~vk~gDiI~v~~ 148 (550)
.-++|||++|+.+. .++.||.|.+-.
T Consensus 73 ~gt~vng~~v~~~~-~L~~gd~i~iG~ 98 (107)
T d1wlna1 73 AETYVDGQRISETT-MLQSGMRLQFGT 98 (107)
T ss_dssp SCEEETSCBCSSCE-EECTTCEEEETT
T ss_pred cceEEcccccccee-ECCCCCEEEECC
Confidence 35899999997754 589999999853
No 66
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=20.06 E-value=40 Score=25.38 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=38.8
Q ss_pred hHHHHhhhhHHHHhhhccCChhHHHHHHhhcC---ChHHHHHHHhhhhhccCCCCCCeE
Q psy8861 469 KAKELRRVVEPILTLSKKNTLSNKRLAFSYLR---DRKITIKLFSELGPRYIKINGGYV 524 (550)
Q Consensus 469 kAke~r~~aeklIt~ak~~~~~~~r~~~~~l~---~~~~~~kLf~~l~pry~~r~gGyT 524 (550)
.-+++...+|-++..|-+ .+.... +...+. +++.+..+.++|..+|.+++.||.
T Consensus 4 ~~~~l~~~IEAlLFas~~-Pls~~~-L~~~l~~~~~~~~i~~~l~~L~~~y~~~~~g~e 60 (85)
T d1t6sa1 4 QRQQLLRSLEALIFSSEE-PVNLQT-LSQITAHKFTPSELQEAVDELNRDYEATGRTFR 60 (85)
T ss_dssp HHHHHHHHHHHHHHHCSS-CBCHHH-HHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred hHHHHHHHHHHHHHhcCC-CCCHHH-HHHHHccCCCHHHHHHHHHHHHHHHhcCCCcEE
Confidence 346788899999998743 333333 344443 467789999999999998887864
Done!