Your job contains 1 sequence.
>psy8861
MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ
KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS
HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME
GVFKSEPNRSEFANDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLS
SMIGCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCV
VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS
LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE
ILASRGKYYMRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPI
LTLSKKNTLSNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMA
FIELLNQTKN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8861
(550 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P0A7Z4 - symbol:rpoA species:83333 "Escherichia... 401 8.7e-69 2
UNIPROTKB|P0A7V8 - symbol:rpsD species:83333 "Escherichia... 655 2.9e-64 1
TIGR_CMR|CPS_0626 - symbol:CPS_0626 "DNA-directed RNA pol... 364 1.3e-63 2
UNIPROTKB|Q9KP07 - symbol:rpsD "30S ribosomal protein S4"... 631 1.0e-61 1
TIGR_CMR|VC_2572 - symbol:VC_2572 "ribosomal protein S4" ... 631 1.0e-61 1
TIGR_CMR|SO_0255 - symbol:SO_0255 "ribosomal protein S4" ... 613 8.1e-60 1
TIGR_CMR|CBU_0263 - symbol:CBU_0263 "DNA-directed RNA pol... 362 9.2e-60 2
TIGR_CMR|CPS_0625 - symbol:CPS_0625 "ribosomal protein S4... 609 2.2e-59 1
TIGR_CMR|CBU_0262 - symbol:CBU_0262 "ribosomal protein S4... 588 3.6e-57 1
TIGR_CMR|SPO_0511 - symbol:SPO_0511 "DNA-directed RNA pol... 281 4.5e-49 2
TIGR_CMR|GSU_2831 - symbol:GSU_2831 "DNA-directed RNA pol... 288 5.0e-45 2
TIGR_CMR|GSU_2832 - symbol:GSU_2832 "ribosomal protein S4... 457 2.8e-43 1
TIGR_CMR|CJE_1766 - symbol:CJE_1766 "ribosomal protein S4... 447 3.2e-42 1
TIGR_CMR|CHY_2281 - symbol:CHY_2281 "DNA-directed RNA pol... 293 6.5e-42 2
TIGR_CMR|CHY_2282 - symbol:CHY_2282 "ribosomal protein S4... 434 7.5e-41 1
TIGR_CMR|BA_0137 - symbol:BA_0137 "DNA-directed RNA polym... 289 2.7e-40 2
TIGR_CMR|ECH_0432 - symbol:ECH_0432 "DNA-directed RNA pol... 241 3.0e-37 2
UNIPROTKB|P0AG44 - symbol:rplQ "50S ribosomal subunit pro... 397 6.3e-37 1
TIGR_CMR|SO_0256 - symbol:SO_0256 "DNA-directed RNA polym... 396 8.0e-37 1
UNIPROTKB|Q9KP08 - symbol:rpoA "DNA-directed RNA polymera... 392 2.1e-36 1
TIGR_CMR|VC_2571 - symbol:VC_2571 "DNA-directed RNA polym... 392 2.1e-36 1
TIGR_CMR|APH_0303 - symbol:APH_0303 "DNA-directed RNA pol... 241 5.4e-36 2
TIGR_CMR|BA_4908 - symbol:BA_4908 "ribosomal protein S4" ... 387 7.2e-36 1
UNIPROTKB|Q9KP09 - symbol:rplQ "50S ribosomal protein L17... 384 1.5e-35 1
TIGR_CMR|VC_2570 - symbol:VC_2570 "ribosomal protein L17"... 384 1.5e-35 1
TIGR_CMR|CBU_0264 - symbol:CBU_0264 "ribosomal protein L1... 377 9.4e-35 1
TIGR_CMR|SO_0257 - symbol:SO_0257 "ribosomal protein L17"... 372 3.8e-34 1
TIGR_CMR|CPS_0627 - symbol:CPS_0627 "ribosomal protein L1... 348 2.3e-31 1
UNIPROTKB|P66701 - symbol:rpoA "DNA-directed RNA polymera... 237 2.4e-31 2
UNIPROTKB|O06325 - symbol:rpsD "30S ribosomal protein S4"... 344 6.5e-31 1
TIGR_CMR|SPO_3181 - symbol:SPO_3181 "ribosomal protein S4... 336 5.2e-30 1
TIGR_CMR|DET_0501 - symbol:DET_0501 "ribosomal protein S4... 311 3.1e-27 1
TIGR_CMR|SPO_0512 - symbol:SPO_0512 "ribosomal protein L1... 304 1.9e-26 1
UNIPROTKB|P0C486 - symbol:rps4 "30S ribosomal protein S4,... 303 2.4e-26 1
UNIPROTKB|P0C487 - symbol:rps4 "30S ribosomal protein S4,... 303 2.4e-26 1
UNIPROTKB|P0C488 - symbol:rps4 "30S ribosomal protein S4,... 303 2.4e-26 1
UNIPROTKB|Q6ENH2 - symbol:rps4 "30S ribosomal protein S4,... 303 2.4e-26 1
TIGR_CMR|GSU_2830 - symbol:GSU_2830 "ribosomal protein L1... 301 4.0e-26 1
TIGR_CMR|ECH_0433 - symbol:ECH_0433 "ribosomal protein L1... 293 3.0e-25 1
TIGR_CMR|CJE_1768 - symbol:CJE_1768 "ribosomal protein L1... 289 8.3e-25 1
TIGR_CMR|ECH_0912 - symbol:ECH_0912 "ribosomal protein S4... 287 1.4e-24 1
TIGR_CMR|NSE_0289 - symbol:NSE_0289 "DNA-directed RNA pol... 206 1.7e-24 2
TIGR_CMR|APH_0989 - symbol:APH_0989 "ribosomal protein S4... 285 2.3e-24 1
TIGR_CMR|CJE_1767 - symbol:CJE_1767 "DNA-directed RNA pol... 182 8.7e-23 2
TIGR_CMR|APH_0304 - symbol:APH_0304 "ribosomal protein L1... 259 1.6e-21 1
DICTYBASE|DDB_G0281435 - symbol:mrpl17 "ribosomal protein... 258 2.0e-21 1
TAIR|locus:2144821 - symbol:AT5G09770 species:3702 "Arabi... 247 3.2e-20 1
TIGR_CMR|DET_0502 - symbol:DET_0502 "DNA-directed RNA pol... 245 5.2e-20 1
TAIR|locus:2080335 - symbol:AT3G54210 species:3702 "Arabi... 244 6.7e-20 1
TIGR_CMR|NSE_0583 - symbol:NSE_0583 "ribosomal protein S4... 242 1.1e-19 1
TAIR|locus:2174804 - symbol:AT5G64650 species:3702 "Arabi... 242 1.1e-19 1
TIGR_CMR|CHY_2280 - symbol:CHY_2280 "ribosomal protein L1... 238 3.0e-19 1
TIGR_CMR|NSE_0290 - symbol:NSE_0290 "ribosomal protein L1... 232 1.4e-18 1
UNIPROTKB|P0A5V4 - symbol:rplQ "50S ribosomal protein L17... 230 2.2e-18 1
ASPGD|ASPL0000055909 - symbol:AN1348 species:162425 "Emer... 228 3.7e-18 1
TIGR_CMR|DET_0503 - symbol:DET_0503 "ribosomal protein L1... 225 7.8e-18 1
TIGR_CMR|BA_0138 - symbol:BA_0138 "ribosomal protein L17"... 223 1.3e-17 1
POMBASE|SPBC1271.13 - symbol:mrpl8 "mitochondrial ribosom... 218 4.5e-17 1
UNIPROTKB|Q2LIP1 - symbol:rpoA "RNA polymerase subunit" s... 170 1.4e-15 2
UNIPROTKB|Q2LIP0 - symbol:rpoA "RNA polymerase subunit" s... 164 7.2e-15 2
UNIPROTKB|Q2LIP2 - symbol:rpoA "RNA polymerase subunit" s... 164 7.2e-15 2
UNIPROTKB|Q2LIP3 - symbol:rpoA "RNA polymerase subunit" s... 164 7.2e-15 2
UNIPROTKB|Q2LIN9 - symbol:rpoA "RNA polymerase subunit" s... 163 9.6e-15 2
UNIPROTKB|Q2LIP4 - symbol:rpoA "RNA polymerase subunit" s... 163 9.6e-15 2
UNIPROTKB|Q2LIP5 - symbol:rpoA "RNA polymerase subunit" s... 163 9.6e-15 2
UNIPROTKB|Q2LIP6 - symbol:rpoA "RNA polymerase subunit" s... 163 9.6e-15 2
UNIPROTKB|Q2LIP8 - symbol:rpoA "RNA polymerase subunit" s... 163 9.6e-15 2
UNIPROTKB|P0C498 - symbol:rpoA "DNA-directed RNA polymera... 163 1.4e-14 2
UNIPROTKB|P0C499 - symbol:rpoA "DNA-directed RNA polymera... 163 1.4e-14 2
UNIPROTKB|P0C500 - symbol:rpoA "DNA-directed RNA polymera... 163 1.4e-14 2
UNIPROTKB|Q6ENE2 - symbol:rpoA "DNA-directed RNA polymera... 163 1.4e-14 2
UNIPROTKB|Q2LIP7 - symbol:rpoA "RNA polymerase subunit" s... 161 1.6e-14 2
GENEDB_PFALCIPARUM|PFE1125w - symbol:PFE1125w "50S riboso... 193 2.3e-14 1
UNIPROTKB|C0H4F9 - symbol:PFE1125w "Mitochondrial ribosom... 193 2.3e-14 1
SGD|S000003599 - symbol:MRPL8 "Mitochondrial ribosomal pr... 186 1.3e-13 1
UNIPROTKB|F1NHT8 - symbol:MRPL17 "Uncharacterized protein... 152 5.9e-10 1
UNIPROTKB|Q9NRX2 - symbol:MRPL17 "39S ribosomal protein L... 149 1.3e-09 1
UNIPROTKB|Q3T0L3 - symbol:MRPL17 "39S ribosomal protein L... 146 2.6e-09 1
MGI|MGI:1351608 - symbol:Mrpl17 "mitochondrial ribosomal ... 146 2.6e-09 1
UNIPROTKB|F1RMQ4 - symbol:MRPL17 "Uncharacterized protein... 145 3.4e-09 1
UNIPROTKB|E2QYN8 - symbol:MRPL17 "Uncharacterized protein... 150 3.9e-09 1
RGD|70943 - symbol:Mrpl17 "mitochondrial ribosomal protei... 142 7.1e-09 1
GENEDB_PFALCIPARUM|PF14_0289 - symbol:PF14_0289 "ribosoma... 145 2.0e-07 1
UNIPROTKB|Q8ILF5 - symbol:PF14_0289 "Mitochondrial riboso... 145 2.0e-07 1
DICTYBASE|DDB_G0294046 - symbol:mrps4 "ribosomal protein ... 145 3.5e-07 1
ZFIN|ZDB-GENE-040912-133 - symbol:mrpl17 "mitochondrial r... 123 7.8e-07 1
CGD|CAL0005986 - symbol:MRPL8 species:5476 "Candida albic... 120 0.00015 1
UNIPROTKB|E9PKV2 - symbol:MRPL17 "39S ribosomal protein L... 83 0.00044 2
>UNIPROTKB|P0A7Z4 [details] [associations]
symbol:rpoA species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 EMBL:U18997
GO:GO:0006351 DrugBank:DB00615 PDB:1LB2 PDB:3IYD PDB:3N4M
PDBsum:1LB2 PDBsum:3IYD PDBsum:3N4M GO:GO:0003899 PDB:1XS9
PDBsum:1XS9 EMBL:X02543 EMBL:J01685 EMBL:X00766 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:X53843 EMBL:X53844
EMBL:V00353 EMBL:M29822 EMBL:M29823 EMBL:M29824 PIR:A22884
RefSeq:NP_417754.1 RefSeq:YP_492137.1 PDB:1BDF PDB:1COO PDB:3K4G
PDB:3LU0 PDB:3N97 PDBsum:1BDF PDBsum:1COO PDBsum:3K4G PDBsum:3LU0
PDBsum:3N97 ProteinModelPortal:P0A7Z4 SMR:P0A7Z4 DIP:DIP-35879N
IntAct:P0A7Z4 SWISS-2DPAGE:P0A7Z4 PaxDb:P0A7Z4 PRIDE:P0A7Z4
EnsemblBacteria:EBESCT00000004672 EnsemblBacteria:EBESCT00000014914
GeneID:12934404 GeneID:947794 KEGG:ecj:Y75_p3881 KEGG:eco:b3295
PATRIC:32122022 EchoBASE:EB0886 EcoGene:EG10893
BioCyc:EcoCyc:EG10893-MONOMER BioCyc:ECOL316407:JW3257-MONOMER
BioCyc:MetaCyc:EG10893-MONOMER EvolutionaryTrace:P0A7Z4
Genevestigator:P0A7Z4 Uniprot:P0A7Z4
Length = 329
Score = 401 (146.2 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 76/142 (53%), Positives = 103/142 (72%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+ + LKPR++D++ + S HAKV +EP ERG+G+TLGNALRR+LLSSM GCA TEV I G
Sbjct: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
LHEYS+ EGVQEDI++I+LNLKG+ +++ +D IL L K G V A+DI D+E+V
Sbjct: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124
Query: 316 NPNHIIAHLSDNEEAIRQSARV 337
P H+I HL+D +I +V
Sbjct: 125 KPQHVICHLTDENASISMRIKV 146
Score = 315 (115.9 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 65/101 (64%), Positives = 79/101 (78%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEAIR++A +L +QL F L + + E+ + DPILLRPVDDLELTVRSANCL
Sbjct: 212 DPEEAIRRAATILAEQLEAFVDLRDVR-QPEVKEEKPEFDPILLRPVDDLELTVRSANCL 270
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE IH IGDL+QR+E ELL+TPNLG+KSL EIK++LASRG
Sbjct: 271 KAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311
>UNIPROTKB|P0A7V8 [details] [associations]
symbol:rpsD species:83333 "Escherichia coli K-12"
[GO:0019843 "rRNA binding" evidence=IEA;IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0048027
"mRNA 5'-UTR binding" evidence=IDA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045947 "negative regulation of translational
initiation" evidence=IDA] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=IMP] InterPro:IPR001912
InterPro:IPR002942 InterPro:IPR005709 InterPro:IPR018079
Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632 PROSITE:PS50889
SMART:SM00363 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0045947 GO:GO:0006412 GO:GO:0046677
EMBL:U18997 GO:GO:0048027 GO:GO:0003735 GO:GO:0019843 PDB:3J00
PDBsum:3J00 GO:GO:0000900 DrugBank:DB01017 DrugBank:DB00254
GO:GO:0006353 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV
PDBsum:3IZW GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522
InterPro:IPR022801 PANTHER:PTHR11831 GO:GO:0031564 DrugBank:DB00759
PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ PDB:1EG0 PDBsum:1EG0
EMBL:X02543 EMBL:J01685 EMBL:V00353 Gene3D:1.10.1050.10
HAMAP:MF_01306_B TIGRFAMs:TIGR01017 HOGENOM:HOG000221003 KO:K02986
PDB:4GAS PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G
PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB
PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD
PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0
PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHP
PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1
PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O
PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U
PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13
PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA
PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY
PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ
PDBsum:4GD2 ProtClustDB:PRK05327 OMA:THGHILV PIR:C23807
RefSeq:NP_417755.1 RefSeq:YP_492136.1 ProteinModelPortal:P0A7V8
SMR:P0A7V8 DIP:DIP-35794N IntAct:P0A7V8 PaxDb:P0A7V8 PRIDE:P0A7V8
EnsemblBacteria:EBESCT00000004491 EnsemblBacteria:EBESCT00000017050
GeneID:12934394 GeneID:947793 KEGG:ecj:Y75_p3880 KEGG:eco:b3296
PATRIC:32122024 EchoBASE:EB0896 EcoGene:EG10903
BioCyc:EcoCyc:EG10903-MONOMER BioCyc:ECOL316407:JW3258-MONOMER
DrugBank:DB00453 DrugBank:DB00618 DrugBank:DB00256 DrugBank:DB00595
DrugBank:DB00560 EvolutionaryTrace:P0A7V8 Genevestigator:P0A7V8
Uniprot:P0A7V8
Length = 206
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 123/200 (61%), Positives = 157/200 (78%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK-PRLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KME
Sbjct: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK +P RS+ + DIN+ L
Sbjct: 180 GTFKRKPERSDLSADINEHL 199
>TIGR_CMR|CPS_0626 [details] [associations]
symbol:CPS_0626 "DNA-directed RNA polymerase, alpha
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 RefSeq:YP_267376.1
ProteinModelPortal:Q488Y8 SMR:Q488Y8 STRING:Q488Y8 PRIDE:Q488Y8
GeneID:3520070 KEGG:cps:CPS_0626 PATRIC:21464579
BioCyc:CPSY167879:GI48-713-MONOMER Uniprot:Q488Y8
Length = 329
Score = 364 (133.2 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 74/145 (51%), Positives = 105/145 (72%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+ + L+PR++ ++T+ AKV +EP ERG+G+TLGNALRR+LLSSM GCA TEV I G
Sbjct: 5 VTEFLRPRLVGIETVSPRRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
LHEYSS EGVQEDII+I+LNLKG+ + L ++ A+L + K G+ V A+DI+ D+ +
Sbjct: 65 LHEYSSKEGVQEDIIEILLNLKGLAVILEGKNEAVLTVTKSGEGPVTAADIQHDGDVTIA 124
Query: 316 NPNHIIAHLSDNEEAIRQSARVLVD 340
NP+H+I L+ E +I S R+ V+
Sbjct: 125 NPDHVICTLT-GEGSI--SMRIKVE 146
Score = 307 (113.1 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 66/103 (64%), Positives = 81/103 (78%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEK--VDPILLRPVDDLELTVRSAN 383
D EEAIR+++ +L +QL+ F L + KE++ EK DPILLRPVDDLELTVRSAN
Sbjct: 211 DPEEAIRRASTILAEQLDAFVELRDI---KEVEQVEEKPLFDPILLRPVDDLELTVRSAN 267
Query: 384 CLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
CLKAE I IGDL+QR+E ELL+TPNLG+KSL EIK++LASRG
Sbjct: 268 CLKAEAIQYIGDLVQRAEVELLKTPNLGKKSLTEIKDVLASRG 310
>UNIPROTKB|Q9KP07 [details] [associations]
symbol:rpsD "30S ribosomal protein S4" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001912 InterPro:IPR002942
InterPro:IPR005709 InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479
PROSITE:PS00632 PROSITE:PS50889 SMART:SM00363 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003735 GO:GO:0019843
GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 KO:K02986 ProtClustDB:PRK05327 OMA:THGHILV
PIR:B82061 RefSeq:NP_232200.1 ProteinModelPortal:Q9KP07 SMR:Q9KP07
DNASU:2615589 GeneID:2615589 KEGG:vch:VC2572 PATRIC:20084170
Uniprot:Q9KP07
Length = 206
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 121/200 (60%), Positives = 152/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D+++VREKAKKQ+RI +LE++E +WI VD ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>TIGR_CMR|VC_2572 [details] [associations]
symbol:VC_2572 "ribosomal protein S4" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003735 GO:GO:0019843 GO:GO:0015935
Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 KO:K02986 ProtClustDB:PRK05327 OMA:THGHILV
PIR:B82061 RefSeq:NP_232200.1 ProteinModelPortal:Q9KP07 SMR:Q9KP07
DNASU:2615589 GeneID:2615589 KEGG:vch:VC2572 PATRIC:20084170
Uniprot:Q9KP07
Length = 206
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 121/200 (60%), Positives = 152/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK+D PG HG G R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARRG-RLSEYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE R DNVVYRMGF +TR+EARQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN K+VN+ S+ + D+++VREKAKKQ+RI +LE++E +WI VD ME
Sbjct: 120 HKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + DIN+ L
Sbjct: 180 GTFKRMPERSDLSADINEQL 199
>TIGR_CMR|SO_0255 [details] [associations]
symbol:SO_0255 "ribosomal protein S4" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 GO:GO:0006412 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843 GO:GO:0015935
Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 HOGENOM:HOG000221003 KO:K02986
ProtClustDB:PRK05327 OMA:THGHILV RefSeq:NP_715895.1
ProteinModelPortal:P59131 SMR:P59131 GeneID:1168138
KEGG:son:SO_0255 PATRIC:23520203 Uniprot:P59131
Length = 206
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 115/200 (57%), Positives = 153/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++DSKCKL+ PGQHG R S+YG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLESAPGQHGARK-PRLSEYGLQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R+YG+LEKQFR Y+ E ARLKG TGE +L+LLE+R DNVVYRMGF +TR+E+RQL+S
Sbjct: 60 KVRRIYGVLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H++ +VN ++VNI S+K+ D++S+REK++ Q RI +LE++ +W+ VD+ KME
Sbjct: 120 HKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDSAKME 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
G FK P RS+ + +IN+ L
Sbjct: 180 GAFKRIPERSDLSAEINEQL 199
>TIGR_CMR|CBU_0263 [details] [associations]
symbol:CBU_0263 "DNA-directed RNA polymerase, alpha
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 RefSeq:NP_819307.1
ProteinModelPortal:Q83EQ2 SMR:Q83EQ2 PRIDE:Q83EQ2 GeneID:1208144
KEGG:cbu:CBU_0263 PATRIC:17929219
BioCyc:CBUR227377:GJ7S-270-MONOMER Uniprot:Q83EQ2
Length = 327
Score = 362 (132.5 bits), Expect = 9.2e-60, Sum P(2) = 9.2e-60
Identities = 69/136 (50%), Positives = 98/136 (72%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
N + L P+ I V+T+ H ++++EP ERG+G+TLGNALRR+LLSSM G A + I
Sbjct: 3 NVLKSFLTPKNIQVQTISPCHFRILLEPLERGFGHTLGNALRRILLSSMPGAAIVQAEID 62
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
G LHEYSS+EGV+ED++D++LNLKGV +KL R+ A L L K G V A DI+ S ++
Sbjct: 63 GVLHEYSSIEGVREDVVDVLLNLKGVAIKLEGREDAKLTLHKKGAGTVTAGDIQTESGVK 122
Query: 314 LVNPNHIIAHLSDNEE 329
+VNP+H+IAH++ + E
Sbjct: 123 IVNPDHVIAHITKDGE 138
Score = 273 (101.2 bits), Expect = 9.2e-60, Sum P(2) = 9.2e-60
Identities = 59/101 (58%), Positives = 76/101 (75%)
Query: 326 DNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
D EEAIR +A VL QL F L+ ++ KV+P+LLRPV+DLELTVR+ANCL
Sbjct: 210 DPEEAIRFAAAVLQHQLAAFVDLKQES-DRDGGGKEGKVNPLLLRPVEDLELTVRAANCL 268
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
KAE+I+ IGDL+Q +EN+LL+TPNLG+KSL EIK +LA +G
Sbjct: 269 KAESINYIGDLVQCTENDLLKTPNLGKKSLLEIKSVLAQKG 309
>TIGR_CMR|CPS_0625 [details] [associations]
symbol:CPS_0625 "ribosomal protein S4" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 GO:GO:0006412 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843 GO:GO:0015935
Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 HOGENOM:HOG000221003 KO:K02986 OMA:THGHILV
RefSeq:YP_267375.1 ProteinModelPortal:Q488Y9 SMR:Q488Y9
STRING:Q488Y9 PRIDE:Q488Y9 GeneID:3519538 KEGG:cps:CPS_0625
PATRIC:21464577 BioCyc:CPSY167879:GI48-712-MONOMER Uniprot:Q488Y9
Length = 206
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 117/200 (58%), Positives = 153/200 (76%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG G R SDYG Q REKQ
Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIETIPGQHGARRG-RLSDYGVQLREKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
KV+R++G+LEKQF Y+ E AR KG TGE +L+LLE+R DNVVYRMG++STR+EARQL+S
Sbjct: 60 KVRRIFGVLEKQFSNYYKEAARQKGNTGENLLQLLETRLDNVVYRMGYASTRAEARQLVS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A +VN +VNI S+ +K D +SVREK+K Q RI +LEL++ W+ VD KK+E
Sbjct: 120 HKAIVVNGVVVNIPSFTVKAEDTVSVREKSKTQARIIAALELADQREKPLWVEVDTKKLE 179
Query: 181 GVFKSEPNRSEFANDINDLL 200
GVFK P+R++ + +IN+ L
Sbjct: 180 GVFKRVPDRADLSAEINEQL 199
>TIGR_CMR|CBU_0262 [details] [associations]
symbol:CBU_0262 "ribosomal protein S4" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001912 InterPro:IPR002942
InterPro:IPR005709 InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479
PROSITE:PS00632 PROSITE:PS50889 SMART:SM00363 GO:GO:0006412
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 HOGENOM:HOG000221003 KO:K02986
ProtClustDB:PRK05327 OMA:THGHILV RefSeq:NP_819306.1
ProteinModelPortal:Q83EQ3 SMR:Q83EQ3 PRIDE:Q83EQ3 GeneID:1208143
KEGG:cbu:CBU_0262 PATRIC:17929217
BioCyc:CBUR227377:GJ7S-269-MONOMER Uniprot:Q83EQ3
Length = 206
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 114/191 (59%), Positives = 143/191 (74%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY+GPK +L RRE DL LKS R++DSKC ++ PG H + G RT+DYG Q R KQ
Sbjct: 1 MARYLGPKCRLSRREKTDLQLKSGIRAIDSKCNIERIPGMHWQRRG-RTTDYGVQLRMKQ 59
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
+KR Y +LEKQF Y+ + RLKG TG+ +LKLLESR DNVVYRMGF++TR+EARQLIS
Sbjct: 60 MIKRYYDVLEKQFANYYKQADRLKGSTGDNLLKLLESRLDNVVYRMGFAATRAEARQLIS 119
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+A LVN ++VNI SY++KPGDII VR +AK Q RI +LEL++ P SWI VD KKM
Sbjct: 120 HKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLRIKGALELAQQRAPISWIEVDTKKMT 179
Query: 181 GVFKSEPNRSE 191
G FK +P+ +E
Sbjct: 180 GTFKEQPDVAE 190
>TIGR_CMR|SPO_0511 [details] [associations]
symbol:SPO_0511 "DNA-directed RNA polymerase, alpha
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 RefSeq:YP_165773.1
ProteinModelPortal:Q5LW32 SMR:Q5LW32 GeneID:3193120
KEGG:sil:SPO0511 PATRIC:23374285 Uniprot:Q5LW32
Length = 338
Score = 281 (104.0 bits), Expect = 4.5e-49, Sum P(2) = 4.5e-49
Identities = 63/135 (46%), Positives = 89/135 (65%)
Query: 198 DLLKPRIIDVKTLGSNHAK---VIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISG 254
+L+KP ++VK G++ A+ VI EP ERG+G TLGNALRR+L+SS+ G A + V I
Sbjct: 8 ELIKPTQLEVKP-GNDPARQATVIAEPLERGFGLTLGNALRRILMSSLQGAAISSVQIDN 66
Query: 255 ALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIEL 314
LHE+SS+ GV+ED+ DIILNLK V L++ L++ G VV A DI + IE+
Sbjct: 67 VLHEFSSVAGVREDVTDIILNLKQVSLRMDVEGPKRLSVNAKGPAVVTAGDISESAGIEV 126
Query: 315 VNPNHIIAHLSDNEE 329
+N +H+I HL D +
Sbjct: 127 LNRDHVICHLDDGAD 141
Score = 261 (96.9 bits), Expect = 4.5e-49, Sum P(2) = 4.5e-49
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 328 EEAIRQSARVLVDQLNVFAALEN--TPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
++A+ +AR+L DQL++F + + +++ D LE +P+LL+ VD+LEL+VRSANCL
Sbjct: 213 DDAVAFAARILQDQLSIFVNFDEPESAGRQDDDDGLE-FNPLLLKKVDELELSVRSANCL 271
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
K +NI IGDLIQ++E E+LRTPN GRKSLNEIKE+L+ G
Sbjct: 272 KNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLSGMG 312
>TIGR_CMR|GSU_2831 [details] [associations]
symbol:GSU_2831 "DNA-directed RNA polymerase, alpha
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 RefSeq:NP_953874.1
ProteinModelPortal:Q749B3 SMR:Q749B3 GeneID:2686836
KEGG:gsu:GSU2831 PATRIC:22028507
BioCyc:GSUL243231:GH27-2783-MONOMER Uniprot:Q749B3
Length = 340
Score = 288 (106.4 bits), Expect = 5.0e-45, Sum P(2) = 5.0e-45
Identities = 62/130 (47%), Positives = 84/130 (64%)
Query: 198 DLLKPRIIDVK--TLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
DL+ P+ + V+ TL + + K EPFERG+G TLGN+LRRVLLSS+ G T V I G
Sbjct: 7 DLISPKKLQVESETLTNKYGKFYAEPFERGFGTTLGNSLRRVLLSSLQGAGITSVRIKGV 66
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
LHE+SS+ GV ED+ +IILNLKGV LK+Y + + + G ++ A DI +E++
Sbjct: 67 LHEFSSIPGVTEDVTNIILNLKGVSLKMYGTEPKTVRIIHKGDGIITAGDIITDPQVEIL 126
Query: 316 NPNHIIAHLS 325
NP H IA S
Sbjct: 127 NPEHHIATCS 136
Score = 215 (80.7 bits), Expect = 5.0e-45, Sum P(2) = 5.0e-45
Identities = 48/102 (47%), Positives = 68/102 (66%)
Query: 328 EEAIRQSARVLVDQLNVFAAL--ENTPV-KKELDSSLEKVDPILLRPVDDLELTVRSANC 384
E+A+ +A++L +QL++F E P + E+ ++ L R VD+LEL+VRSANC
Sbjct: 212 EDAVAFAAKILKEQLSIFINFDEEAEPSGEAEVGEGESPINENLYRSVDELELSVRSANC 271
Query: 385 LKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
LK I IG+L+ R+E E+L+T N GRKSLNEIK+ILA G
Sbjct: 272 LKNAGIKLIGELVSRTEAEMLKTQNFGRKSLNEIKDILAEMG 313
>TIGR_CMR|GSU_2832 [details] [associations]
symbol:GSU_2832 "ribosomal protein S4" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001912
InterPro:IPR002942 InterPro:IPR005709 InterPro:IPR018079
Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632 PROSITE:PS50889
SMART:SM00363 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 GO:GO:0015935 Gene3D:3.10.290.10
eggNOG:COG0522 InterPro:IPR022801 PANTHER:PTHR11831
Gene3D:1.10.1050.10 HAMAP:MF_01306_B TIGRFAMs:TIGR01017
HOGENOM:HOG000221003 KO:K02986 ProtClustDB:PRK05327 OMA:THGHILV
RefSeq:NP_953875.1 ProteinModelPortal:Q749B2 SMR:Q749B2
PRIDE:Q749B2 GeneID:2686834 KEGG:gsu:GSU2832 PATRIC:22028509
BioCyc:GSUL243231:GH27-2784-MONOMER Uniprot:Q749B2
Length = 208
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 97/204 (47%), Positives = 132/204 (64%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP +LCRRE ++LFLK R D KC + R PGQHG+ + S+YG Q R
Sbjct: 1 MARYTGPSCRLCRRENMELFLKGERCYTD-KCAIKRRNYPPGQHGQ-GRPKVSNYGVQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQKV+R+YGILEKQFR YF E RLKG TGE +L LLE R DNVVYR+GF+++R+EAR
Sbjct: 59 EKQKVRRIYGILEKQFRSYFQEADRLKGVTGENLLSLLERRLDNVVYRLGFAASRTEARI 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLE-LSEHSTPFSWITVDA 176
L+ H F +N K NI S +++ GD++ ++EK++K I SL+ + P W+ ++
Sbjct: 119 LVRHNHFTLNGKKANIPSIQLRAGDVVELKEKSRKIACINESLDAVVRRGIP-QWLELEK 177
Query: 177 KKMEGVFKSEPNRSEFANDINDLL 200
+GV K+ P R + I + L
Sbjct: 178 DAYKGVVKTLPVREDITMPIQEQL 201
>TIGR_CMR|CJE_1766 [details] [associations]
symbol:CJE_1766 "ribosomal protein S4" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006450 "regulation of translational fidelity" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001912
InterPro:IPR002942 InterPro:IPR005709 InterPro:IPR018079
Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632 PROSITE:PS50889
SMART:SM00363 GO:GO:0006412 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 GO:GO:0015935 Gene3D:3.10.290.10
eggNOG:COG0522 InterPro:IPR022801 PANTHER:PTHR11831
Gene3D:1.10.1050.10 HAMAP:MF_01306_B TIGRFAMs:TIGR01017
HOGENOM:HOG000221003 KO:K02986 ProtClustDB:PRK05327 OMA:THGHILV
RefSeq:YP_179738.1 ProteinModelPortal:Q5HSJ7 SMR:Q5HSJ7
STRING:Q5HSJ7 GeneID:3232393 KEGG:cjr:CJE1766 PATRIC:20045342
BioCyc:CJEJ195099:GJC0-1796-MONOMER Uniprot:Q5HSJ7
Length = 208
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 96/194 (49%), Positives = 126/194 (64%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRP---GQHGRISGSRTSDYGYQFR 57
MARY GP KL RR G+ L LK RR L K LD RP GQHG G + S+YG Q R
Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERR-LAGKSALDKRPYAPGQHGARKG-KISEYGLQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK K MYG+ EKQFRR F E AR +G TG ++++LLE R DNVVYRMGF++TR ARQ
Sbjct: 59 EKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAK 177
L++H LVN K V+I S++++ G I + EK+K +I ++EL+ + +W+ V+
Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178
Query: 178 KMEGVFKSEPNRSE 191
K G+F +P R E
Sbjct: 179 KRFGIFTRKPEREE 192
>TIGR_CMR|CHY_2281 [details] [associations]
symbol:CHY_2281 "DNA-directed RNA polymerase, alpha
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182 SUPFAM:SSF47789
TIGRFAMs:TIGR02027 HOGENOM:HOG000218480 RefSeq:YP_361090.1
ProteinModelPortal:Q3A9U4 SMR:Q3A9U4 STRING:Q3A9U4 GeneID:3727157
KEGG:chy:CHY_2281 PATRIC:21277633
BioCyc:CHYD246194:GJCN-2280-MONOMER Uniprot:Q3A9U4
Length = 313
Score = 293 (108.2 bits), Expect = 6.5e-42, Sum P(2) = 6.5e-42
Identities = 54/129 (41%), Positives = 91/129 (70%)
Query: 198 DLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALH 257
++ KP+I + + L + + ++EP ERGYG TLGN++RR+LLSS+ G A T + I G LH
Sbjct: 3 EIEKPKI-ETEELNDRYGRFVIEPLERGYGITLGNSMRRILLSSLPGAAVTSIKIEGVLH 61
Query: 258 EYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNP 317
E+S++ GV ED+ +IILN+K + LKL+ + +L ++ G+ V+ A DI ++E++NP
Sbjct: 62 EFSTVPGVVEDVTEIILNIKNLTLKLHGDEEQVLRIEAEGEGVITAKDIIAPPEVEILNP 121
Query: 318 NHIIAHLSD 326
+ +IAH+++
Sbjct: 122 DLVIAHIAE 130
Score = 180 (68.4 bits), Expect = 6.5e-42, Sum P(2) = 6.5e-42
Identities = 37/101 (36%), Positives = 65/101 (64%)
Query: 328 EEAIRQSARVLVDQLNVFAALEN--TPVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
+EA+ +AR++V+ L +F L T V+ ++ + + + P++DL+L+VRS NCL
Sbjct: 205 DEAVSLAARIMVEHLQLFVNLNERATGVEIMVEKEEDAKEKLAEMPIEDLDLSVRSYNCL 264
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
K I+ +G+LIQ++E ++++ NLG+KSL E+ L S G
Sbjct: 265 KRAGINTVGELIQKTEADMMKVRNLGKKSLEEVISKLNSMG 305
>TIGR_CMR|CHY_2282 [details] [associations]
symbol:CHY_2282 "ribosomal protein S4" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001912 InterPro:IPR002942
InterPro:IPR005709 InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479
PROSITE:PS00632 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 HOGENOM:HOG000221003 KO:K02986
ProtClustDB:PRK05327 OMA:THGHILV RefSeq:YP_361091.1
ProteinModelPortal:Q3A9U3 SMR:Q3A9U3 STRING:Q3A9U3 PRIDE:Q3A9U3
GeneID:3726616 KEGG:chy:CHY_2282 PATRIC:21277635
BioCyc:CHYD246194:GJCN-2281-MONOMER Uniprot:Q3A9U3
Length = 208
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 94/195 (48%), Positives = 125/195 (64%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFR 57
MARY GP KLCRREGI LFLK R D KC + R PGQHG + + ++Y Q R
Sbjct: 1 MARYTGPVCKLCRREGIKLFLKGDRCYTD-KCAIARRNYAPGQHGH-TRKKPTEYALQLR 58
Query: 58 EKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQ 117
EKQK KR+YG+LE QFRRYF R G TGE +L +LE R DNVVYR+G + +R++ARQ
Sbjct: 59 EKQKAKRIYGVLEAQFRRYFEMAERQPGITGENLLVILERRLDNVVYRLGLAESRAQARQ 118
Query: 118 LISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSL-ELSEHSTPFSWITVDA 176
L+ H F VN + VNI SY +K GD+I+++E+ KK + IA + E + T +W++ DA
Sbjct: 119 LVRHNFFTVNGRKVNIPSYLVKVGDVIALKEE-KKDSPIAKEIMERAASKTLPAWLSYDA 177
Query: 177 KKMEGVFKSEPNRSE 191
G ++ P R +
Sbjct: 178 NNAVGKVEALPKRED 192
>TIGR_CMR|BA_0137 [details] [associations]
symbol:BA_0137 "DNA-directed RNA polymerase, alpha subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182 SUPFAM:SSF47789
TIGRFAMs:TIGR02027 RefSeq:NP_842705.1 RefSeq:YP_016742.1
RefSeq:YP_026423.1 ProteinModelPortal:Q81VQ4 SMR:Q81VQ4
DNASU:1086425 EnsemblBacteria:EBBACT00000011228
EnsemblBacteria:EBBACT00000017035 EnsemblBacteria:EBBACT00000019253
GeneID:1086425 GeneID:2819324 GeneID:2850423 KEGG:ban:BA_0137
KEGG:bar:GBAA_0137 KEGG:bat:BAS0137 HOGENOM:HOG000218480
BioCyc:BANT260799:GJAJ-148-MONOMER
BioCyc:BANT261594:GJ7F-150-MONOMER Uniprot:Q81VQ4
Length = 314
Score = 289 (106.8 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 62/141 (43%), Positives = 93/141 (65%)
Query: 198 DLLKPRIIDVK-TLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
++ KP+I V+ + + K ++EP ERGYG TLGN+LRR+LLSS+ G A T + I G L
Sbjct: 3 EIEKPKIETVELNEDAKYGKFVIEPLERGYGTTLGNSLRRILLSSLPGAAVTAIQIDGVL 62
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HE+S++EGV ED+ IILNLK + LK+Y+ + L + G+ +V A+DI SD+E++N
Sbjct: 63 HEFSTVEGVVEDVTTIILNLKKLALKIYSEEEKTLEIDVQGEGIVTAADITHDSDVEILN 122
Query: 317 PN-HIIAHLSDNEEAIRQSAR 336
P+ HI D +R +A+
Sbjct: 123 PDLHIATLAKDAHFRVRLTAK 143
Score = 169 (64.5 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 34/101 (33%), Positives = 61/101 (60%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTPVKKEL--DSSLEKVDPILLRPVDDLELTVRSANCL 385
+EAI A++L + LN+F L + E+ + ++ + +L +++L+L+VRS NCL
Sbjct: 207 KEAISLGAKILTEHLNIFVGLTDEAQNAEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCL 266
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
K I+ + +L ++E ++++ NLGRKSL E+K L G
Sbjct: 267 KRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKLEELG 307
>TIGR_CMR|ECH_0432 [details] [associations]
symbol:ECH_0432 "DNA-directed RNA polymerase, alpha
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 ProtClustDB:PRK05182 SUPFAM:SSF47789
TIGRFAMs:TIGR02027 RefSeq:YP_507250.1 ProteinModelPortal:Q2GH33
SMR:Q2GH33 STRING:Q2GH33 GeneID:3927273 KEGG:ech:ECH_0432
PATRIC:20576341 BioCyc:ECHA205920:GJNR-433-MONOMER Uniprot:Q2GH33
Length = 372
Score = 241 (89.9 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 53/99 (53%), Positives = 68/99 (68%)
Query: 328 EEAIRQSARVLVDQLNVFAALENT--PVKKELDSSLEKVDPILLRPVDDLELTVRSANCL 385
+EA+ +AR+L DQ F + T P KK D LLR VD+LEL+VRS NCL
Sbjct: 247 DEAVALAARILQDQFQPFINFDETDEPHKKVDAKDTLPYDSNLLRKVDELELSVRSYNCL 306
Query: 386 KAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424
K +NI IGDL+Q++E+++LRTPN GRKSLNEI E+LAS
Sbjct: 307 KNDNITYIGDLVQKTESDMLRTPNFGRKSLNEINELLAS 345
Score = 222 (83.2 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 53/128 (41%), Positives = 77/128 (60%)
Query: 199 LLKPRIIDVKTLGS--NHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGAL 256
L KP I V G+ N A +I+EP E G+ TLGNALRRV++SS+ G A V I L
Sbjct: 39 LTKPSSIKVVPSGASPNKADLIIEPLESGFALTLGNALRRVMMSSLRGFAVYGVEIENVL 98
Query: 257 HEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVN 316
HE++S+ GV+ED+ DI+LN+ + +KL + +L+LK G C V + I D ++N
Sbjct: 99 HEFTSISGVREDVTDILLNISMMRVKLSGMNSKVLSLKVKGPCEVRSGMIPDTDDCIILN 158
Query: 317 PNHIIAHL 324
+ +I L
Sbjct: 159 KDLLICTL 166
>UNIPROTKB|P0AG44 [details] [associations]
symbol:rplQ "50S ribosomal subunit protein L17"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] HAMAP:MF_01368
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 EMBL:U18997 GO:GO:0005840 GO:GO:0003735 PDB:2RDO
PDBsum:2RDO eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y
PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS
PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB
PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO
PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV
PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3E1B
PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20
PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS
PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0
PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2WWQ PDBsum:2Z4L
PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05591 EMBL:X02543 EMBL:J01685 EMBL:X00766 PIR:B22884
RefSeq:NP_417753.1 RefSeq:YP_492138.1 ProteinModelPortal:P0AG44
SMR:P0AG44 DIP:DIP-35801N IntAct:P0AG44 MINT:MINT-1251899
PaxDb:P0AG44 PRIDE:P0AG44 EnsemblBacteria:EBESCT00000001152
EnsemblBacteria:EBESCT00000015807 GeneID:12934436 GeneID:947784
KEGG:ecj:Y75_p3882 KEGG:eco:b3294 PATRIC:32122020 EchoBASE:EB0871
EcoGene:EG10878 OMA:VVEPMIT BioCyc:EcoCyc:EG10878-MONOMER
BioCyc:ECOL316407:JW3256-MONOMER EvolutionaryTrace:P0AG44
Genevestigator:P0AG44 Uniprot:P0AG44
Length = 127
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 77/120 (64%), Positives = 98/120 (81%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR R+LNR SSHR M RNM SL+R+EIIKTTLPKAKELRRVVEP++TL+K +++
Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTK 549
+N+RLAF+ RD +I KLF+ELGPR+ GGY RILK GFR GDNAPMA+IEL+++++
Sbjct: 61 ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120
>TIGR_CMR|SO_0256 [details] [associations]
symbol:SO_0256 "DNA-directed RNA polymerase, alpha subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 RefSeq:NP_715896.1
ProteinModelPortal:Q8EK47 SMR:Q8EK47 PRIDE:Q8EK47 GeneID:1168139
KEGG:son:SO_0256 PATRIC:23520205 Uniprot:Q8EK47
Length = 329
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 77/146 (52%), Positives = 107/146 (73%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+ + LKPR++D++ + S AKV +EP ERG+G+TLGNALRR+LLSSM GCA TEV I G
Sbjct: 5 VTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
LHEYSS EGVQEDI++I+LNLKG+ + + +D A+L L K G V+A+DI D+ +V
Sbjct: 65 LHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGAGPVIAADITHDGDVTIV 124
Query: 316 NPNHIIAHLSDNEEAIRQSARVLVDQ 341
NP+H+I HL+ N + S R+ V++
Sbjct: 125 NPDHVICHLTGNNDI---SMRIRVER 147
Score = 325 (119.5 bits), Expect = 8.8e-29, P = 8.8e-29
Identities = 70/126 (55%), Positives = 91/126 (72%)
Query: 301 VLASDIELLSDIELVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSS 360
V A+ +E +D++ + + D EEAIR+SA +L +QL+ F L + + E+
Sbjct: 186 VEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDV-TEPEMKEE 244
Query: 361 LEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKE 420
+ DPILLRPVDDLELTVRSANCLKAE IH IGDL+QR+E ELL+TPNLG+KSL EIK+
Sbjct: 245 KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 304
Query: 421 ILASRG 426
+LASRG
Sbjct: 305 VLASRG 310
>UNIPROTKB|Q9KP08 [details] [associations]
symbol:rpoA "DNA-directed RNA polymerase subunit alpha"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182 SUPFAM:SSF47789
TIGRFAMs:TIGR02027 PIR:A82061 RefSeq:NP_232199.1
ProteinModelPortal:Q9KP08 SMR:Q9KP08 PRIDE:Q9KP08 DNASU:2615588
GeneID:2615588 KEGG:vch:VC2571 PATRIC:20084168 Uniprot:Q9KP08
Length = 330
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 84/188 (44%), Positives = 119/188 (63%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+ + LKPR++D++ + + HAKV +EP ERG+G+TLGNALRR+LLSSM GCA TEV I G
Sbjct: 5 VTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGV 64
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYN-RDYAILNLKKFGKCVVLASDIELLSDIEL 314
LHEYS+ EGVQEDI++I+LNLKG+ +++ +D + L K G V+A DI D+E+
Sbjct: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEI 124
Query: 315 VNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDD 374
VNP H+I HL+ + AI +V + V A+ + E VD PVD
Sbjct: 125 VNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATF-SPVDK 183
Query: 375 LELTVRSA 382
+ +V +A
Sbjct: 184 IAYSVEAA 191
Score = 321 (118.1 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/127 (57%), Positives = 93/127 (73%)
Query: 301 VLASDIELLSDIE-LVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDS 359
V A+ +E +D++ LV L + EEAIR++A +L +QL+ F L + V +E +
Sbjct: 188 VEAARVEQRTDLDKLVIDMETNGTL-EPEEAIRRAATILAEQLDAFVDLRDVRVPEEKEE 246
Query: 360 SLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419
E DPILLRPVDDLELTVRSANCLKAE IH IGDL+QR+E ELL+TPNLG+KSL EIK
Sbjct: 247 KPE-FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 305
Query: 420 EILASRG 426
++LASRG
Sbjct: 306 DVLASRG 312
>TIGR_CMR|VC_2571 [details] [associations]
symbol:VC_2571 "DNA-directed RNA polymerase, alpha subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 KO:K03040 OMA:GKKSYDE
ProtClustDB:PRK05182 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 PIR:A82061
RefSeq:NP_232199.1 ProteinModelPortal:Q9KP08 SMR:Q9KP08
PRIDE:Q9KP08 DNASU:2615588 GeneID:2615588 KEGG:vch:VC2571
PATRIC:20084168 Uniprot:Q9KP08
Length = 330
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 84/188 (44%), Positives = 119/188 (63%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
+ + LKPR++D++ + + HAKV +EP ERG+G+TLGNALRR+LLSSM GCA TEV I G
Sbjct: 5 VTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGV 64
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYN-RDYAILNLKKFGKCVVLASDIELLSDIEL 314
LHEYS+ EGVQEDI++I+LNLKG+ +++ +D + L K G V+A DI D+E+
Sbjct: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEI 124
Query: 315 VNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDD 374
VNP H+I HL+ + AI +V + V A+ + E VD PVD
Sbjct: 125 VNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATF-SPVDK 183
Query: 375 LELTVRSA 382
+ +V +A
Sbjct: 184 IAYSVEAA 191
Score = 321 (118.1 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/127 (57%), Positives = 93/127 (73%)
Query: 301 VLASDIELLSDIE-LVNPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDS 359
V A+ +E +D++ LV L + EEAIR++A +L +QL+ F L + V +E +
Sbjct: 188 VEAARVEQRTDLDKLVIDMETNGTL-EPEEAIRRAATILAEQLDAFVDLRDVRVPEEKEE 246
Query: 360 SLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419
E DPILLRPVDDLELTVRSANCLKAE IH IGDL+QR+E ELL+TPNLG+KSL EIK
Sbjct: 247 KPE-FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 305
Query: 420 EILASRG 426
++LASRG
Sbjct: 306 DVLASRG 312
>TIGR_CMR|APH_0303 [details] [associations]
symbol:APH_0303 "DNA-directed RNA polymerase, alpha
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
RefSeq:YP_504915.1 ProteinModelPortal:Q2GL36 SMR:Q2GL36
STRING:Q2GL36 GeneID:3929972 KEGG:aph:APH_0303 PATRIC:20949180
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
BioCyc:APHA212042:GHPM-333-MONOMER SUPFAM:SSF47789
TIGRFAMs:TIGR02027 Uniprot:Q2GL36
Length = 344
Score = 241 (89.9 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
Identities = 53/101 (52%), Positives = 72/101 (71%)
Query: 328 EEAIRQSARVLVDQLNVFAALENTP-VKKELDSSLEKVDPI---LLRPVDDLELTVRSAN 383
++A+ +A++L DQL F + + +K +D E V P LLR VD+LEL+VRS N
Sbjct: 218 DDAVAVAAKILQDQLQSFISFDEVEETRKSVDKE-EGVLPYDHNLLRKVDELELSVRSHN 276
Query: 384 CLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424
CLK +NI IGDL+QR+E+++LRTPN GRKSLNEI E+LAS
Sbjct: 277 CLKNDNITYIGDLVQRTESDMLRTPNFGRKSLNEINEVLAS 317
Score = 202 (76.2 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
Identities = 50/132 (37%), Positives = 78/132 (59%)
Query: 193 ANDINDLLKPRIIDVKTLGSNHA---KVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTE 249
A+ N L +P +K +G ++++EP E G+ TLGNALRRV++SS+ G A
Sbjct: 2 ADHWNKLTRPS--SIKVVGGKEPCVMELVIEPLESGFALTLGNALRRVMMSSLRGFAVYG 59
Query: 250 VIISGALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELL 309
+ I GA HE ++L GV+ED+ D++LNL + +KL N + +L L G V A+ I
Sbjct: 60 IEIEGASHELTALSGVREDVADLVLNLSMLRVKLLNSNQRVLRLVARGPGEVTAASIVDS 119
Query: 310 SDIELVNPN-HI 320
+D ++N + HI
Sbjct: 120 ADHVVLNKDLHI 131
>TIGR_CMR|BA_4908 [details] [associations]
symbol:BA_4908 "ribosomal protein S4" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 KO:K02986 HOGENOM:HOG000221004
ProtClustDB:PRK05327 RefSeq:NP_847106.1 RefSeq:YP_021552.1
RefSeq:YP_030801.1 ProteinModelPortal:Q81KT2 SMR:Q81KT2
DNASU:1084081 EnsemblBacteria:EBBACT00000011798
EnsemblBacteria:EBBACT00000015610 EnsemblBacteria:EBBACT00000023852
GeneID:1084081 GeneID:2819232 GeneID:2849725 KEGG:ban:BA_4908
KEGG:bar:GBAA_4908 KEGG:bat:BAS4554 OMA:THGHILV
BioCyc:BANT260799:GJAJ-4611-MONOMER
BioCyc:BANT261594:GJ7F-4767-MONOMER Uniprot:Q81KT2
Length = 200
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 84/200 (42%), Positives = 120/200 (60%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP KL RR GI L + L+ K PG HG + S+YG Q +EKQ
Sbjct: 1 MARYTGPAWKLSRRLGISL--SGTGKELE---KRPYAPGPHGPNQRKKLSEYGLQLQEKQ 55
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++ MYG+ E+QFRR F + ++ GK GE + LLE+R DN+VYRMG + TR ARQL++
Sbjct: 56 KLRHMYGMTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVN 115
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H +V+ V+I SY++KPG ISVREK+ + ++E++ P ++T DA K+E
Sbjct: 116 HGHIMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEVNNF-VP-EYLTFDADKLE 173
Query: 181 GVFKSEPNRSEFANDINDLL 200
+ R+E +IN+ L
Sbjct: 174 ATYTRHAERAELPAEINEAL 193
>UNIPROTKB|Q9KP09 [details] [associations]
symbol:rplQ "50S ribosomal protein L17" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_01368 InterPro:IPR000456
Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 HSSP:Q9Z9H5
eggNOG:COG0203 KO:K02879 Gene3D:3.90.1030.10 PANTHER:PTHR14413
SUPFAM:SSF64263 TIGRFAMs:TIGR00059 ProtClustDB:PRK05591 OMA:VVEPMIT
PIR:H82060 RefSeq:NP_232198.1 ProteinModelPortal:Q9KP09 SMR:Q9KP09
PRIDE:Q9KP09 DNASU:2615587 GeneID:2615587 KEGG:vch:VC2570
PATRIC:20084166 Uniprot:Q9KP09
Length = 128
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 73/118 (61%), Positives = 94/118 (79%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR R+LNR SSHR M NM SL+R+E+IKTTLPKAKELRRVVEP++TL+K +++
Sbjct: 1 MRHRKSGRQLNRNSSHRKAMFSNMASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ RD ++ KLF+ELGPR+ GGY RILK GFR GD APMA+IEL+++
Sbjct: 61 ANRRLAFARTRDNEVVAKLFNELGPRFAARQGGYTRILKCGFRAGDKAPMAYIELVDR 118
>TIGR_CMR|VC_2570 [details] [associations]
symbol:VC_2570 "ribosomal protein L17" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 HSSP:Q9Z9H5 eggNOG:COG0203 KO:K02879
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 ProtClustDB:PRK05591 OMA:VVEPMIT PIR:H82060
RefSeq:NP_232198.1 ProteinModelPortal:Q9KP09 SMR:Q9KP09
PRIDE:Q9KP09 DNASU:2615587 GeneID:2615587 KEGG:vch:VC2570
PATRIC:20084166 Uniprot:Q9KP09
Length = 128
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 73/118 (61%), Positives = 94/118 (79%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR R+LNR SSHR M NM SL+R+E+IKTTLPKAKELRRVVEP++TL+K +++
Sbjct: 1 MRHRKSGRQLNRNSSHRKAMFSNMASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ RD ++ KLF+ELGPR+ GGY RILK GFR GD APMA+IEL+++
Sbjct: 61 ANRRLAFARTRDNEVVAKLFNELGPRFAARQGGYTRILKCGFRAGDKAPMAYIELVDR 118
>TIGR_CMR|CBU_0264 [details] [associations]
symbol:CBU_0264 "ribosomal protein L17" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_01368 InterPro:IPR000456
Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735 HSSP:Q9Z9H5
eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
ProtClustDB:PRK05591 OMA:LIMNERI RefSeq:NP_819308.1
ProteinModelPortal:Q83EQ1 SMR:Q83EQ1 GeneID:1208145
KEGG:cbu:CBU_0264 PATRIC:17929221
BioCyc:CBUR227377:GJ7S-271-MONOMER Uniprot:Q83EQ1
Length = 126
Score = 377 (137.8 bits), Expect = 9.4e-35, P = 9.4e-35
Identities = 72/121 (59%), Positives = 97/121 (80%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
M HR R LNRTS+HR MLRNM +SL ++E+IKTTLPKAKELRRVVEP++TL+K++T+
Sbjct: 1 MHHRKSGRHLNRTSAHRKAMLRNMAVSLFQHELIKTTLPKAKELRRVVEPLITLAKEDTV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTK 549
+N+RLAF+ LRD I KLF E+ PR+ + GGY R+LK GFR GD+APMA +EL+++ +
Sbjct: 61 ANRRLAFNRLRDDAIVAKLFKEIAPRHKERPGGYCRVLKYGFRNGDSAPMAIVELVDREE 120
Query: 550 N 550
+
Sbjct: 121 S 121
>TIGR_CMR|SO_0257 [details] [associations]
symbol:SO_0257 "ribosomal protein L17" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 HSSP:Q9Z9H5 eggNOG:COG0203 HOGENOM:HOG000019780
KO:K02879 Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 ProtClustDB:PRK05591 RefSeq:NP_715897.1
ProteinModelPortal:Q8EK46 SMR:Q8EK46 GeneID:1168140
KEGG:son:SO_0257 PATRIC:23520207 OMA:YKRIETT Uniprot:Q8EK46
Length = 131
Score = 372 (136.0 bits), Expect = 3.8e-34, P = 3.8e-34
Identities = 73/118 (61%), Positives = 93/118 (78%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR R+LNR SSHR M RNM SL+R+EIIKTT+ KAKELRRVVEP++TL+K +++
Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ RD ++ KLF+ELGPRY + GGY RILK G R GD APMA+IEL+ +
Sbjct: 61 ANRRLAFARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118
>TIGR_CMR|CPS_0627 [details] [associations]
symbol:CPS_0627 "ribosomal protein L17" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_01368
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
ProtClustDB:PRK05591 OMA:LIMNERI HSSP:Q9NRX2 RefSeq:YP_267377.1
ProteinModelPortal:Q488Y7 SMR:Q488Y7 STRING:Q488Y7 PRIDE:Q488Y7
GeneID:3523270 KEGG:cps:CPS_0627 PATRIC:21464581
BioCyc:CPSY167879:GI48-714-MONOMER Uniprot:Q488Y7
Length = 134
Score = 348 (127.6 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 67/118 (56%), Positives = 93/118 (78%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR R+LNR SSHR M RNM SL+++ +IKTT+ KAKELRRV+EP++TL+K +++
Sbjct: 1 MRHRQSGRQLNRNSSHRQAMFRNMASSLVKHGVIKTTVAKAKELRRVLEPLITLAKTDSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ +D+++ LF+ELG RY + GGY RILK GFR GD APMA+IEL+++
Sbjct: 61 ANRRLAFARTQDKEVVGILFNELGARYQERPGGYTRILKCGFRTGDKAPMAYIELVDR 118
>UNIPROTKB|P66701 [details] [associations]
symbol:rpoA "DNA-directed RNA polymerase subunit alpha"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0005829 GO:GO:0005886
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006351
GO:GO:0003899 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 HOGENOM:HOG000218480 PIR:F70565
RefSeq:NP_217974.1 RefSeq:NP_338089.1 RefSeq:YP_006516946.1
ProteinModelPortal:P66701 SMR:P66701 IntAct:P66701 PRIDE:P66701
EnsemblBacteria:EBMYCT00000003093 EnsemblBacteria:EBMYCT00000071454
GeneID:13317064 GeneID:887629 GeneID:926635 KEGG:mtc:MT3564
KEGG:mtu:Rv3457c KEGG:mtv:RVBD_3457c PATRIC:18129565
TubercuList:Rv3457c Uniprot:P66701
Length = 347
Score = 237 (88.5 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 210 LGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDI 269
L N ++ ++EP E G+GYTLGN+LRR LLSS+ G A T + I G LHE++++ GV+ED+
Sbjct: 14 LTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDV 73
Query: 270 IDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSD 326
+IILNLK +++ + + L+K G V A DI + + + NP IA L+D
Sbjct: 74 TEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLND 130
Score = 165 (63.1 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 329 EAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPI--LLRPVDDLELTVRSANCLK 386
+A+ + + LV+ + L E+ S + D I P+DDL+LTVRS NCLK
Sbjct: 206 DALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLDLTVRSYNCLK 265
Query: 387 AENIHCIGDLIQRSENELLRTPNLGRKSLNEIK 419
E +H +G+L+ R+E++LL N G+KS++E+K
Sbjct: 266 REGVHTVGELVARTESDLLDIRNFGQKSIDEVK 298
>UNIPROTKB|O06325 [details] [associations]
symbol:rpsD "30S ribosomal protein S4" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR001912
InterPro:IPR002942 InterPro:IPR005709 InterPro:IPR018079
Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632 PROSITE:PS50889
SMART:SM00363 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842583 GO:GO:0006412 GO:GO:0003735
GO:GO:0019843 GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522
InterPro:IPR022801 PANTHER:PTHR11831 Gene3D:1.10.1050.10
HAMAP:MF_01306_B TIGRFAMs:TIGR01017 KO:K02986 HOGENOM:HOG000221004
ProtClustDB:PRK05327 OMA:THGHILV PIR:G70565 RefSeq:NP_217975.1
RefSeq:NP_338090.1 RefSeq:YP_006516947.1 ProteinModelPortal:O06325
SMR:O06325 PhosSite:P12071746 PRIDE:O06325
EnsemblBacteria:EBMYCT00000000856 EnsemblBacteria:EBMYCT00000072320
GeneID:13317065 GeneID:887620 GeneID:926628 KEGG:mtc:MT3565
KEGG:mtu:Rv3458c KEGG:mtv:RVBD_3458c PATRIC:18129567
TubercuList:Rv3458c Uniprot:O06325
Length = 201
Score = 344 (126.2 bits), Expect = 6.5e-31, P = 6.5e-31
Identities = 80/192 (41%), Positives = 111/192 (57%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
MARY GP + RR DL ++ + K PGQHGR + + S+Y Q +EKQ
Sbjct: 1 MARYTGPVTRKSRRLRTDLV--GGDQAFE---KRPYPPGQHGR-ARIKESEYLLQLQEKQ 54
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K + YG++EKQFRRY+ E R GKTGE +LK+LESR DNV+YR G + TR ARQL+S
Sbjct: 55 KARFTYGVMEKQFRRYYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVS 114
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELS-EHSTPFSWITVDAKKM 179
H F VN VN+ SY++ DI+ VR+K+ + E + E P SW+ V ++
Sbjct: 115 HGHFNVNGVHVNVPSYRVSQYDIVDVRDKSLNTVPFQIARETAGERPIP-SWLQVVGERQ 173
Query: 180 EGVFKSEPNRSE 191
+ P R++
Sbjct: 174 RVLIHQLPERAQ 185
>TIGR_CMR|SPO_3181 [details] [associations]
symbol:SPO_3181 "ribosomal protein S4" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 KO:K02986 HOGENOM:HOG000221004 OMA:YRCKPGD
ProtClustDB:PRK05327 RefSeq:YP_168384.1 ProteinModelPortal:Q5LNM2
GeneID:3195804 KEGG:sil:SPO3181 PATRIC:23379809 Uniprot:Q5LNM2
Length = 206
Score = 336 (123.3 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 79/206 (38%), Positives = 116/206 (56%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M + K K+ RR G +++ R + + PGQHG+ + SD+G Q R KQ
Sbjct: 1 MTKRTSAKYKIDRRMGENIW----GRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQ 56
Query: 61 KVKRMYGIL-EKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
K+K YG L EKQFRR + E R+KG TGE ++ LLE R D VVYR F T ARQ +
Sbjct: 57 KLKGYYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFV 116
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
+H LVN K VNI SY++K GD+I VRE++K+ + ++ L+E P ++ VD KM
Sbjct: 117 NHGHVLVNGKRVNIPSYRVKEGDVIEVRERSKQLASVLEAVSLAERDVP-DYLEVDHSKM 175
Query: 180 EGVFKSEPNRSEFANDINDLLKPRII 205
F P+ + + +++P ++
Sbjct: 176 TATFVRTPHLGDVPYAV--VMEPNLV 199
>TIGR_CMR|DET_0501 [details] [associations]
symbol:DET_0501 "ribosomal protein S4" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 GO:GO:0006412 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0019843 GO:GO:0015935
Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 HOGENOM:HOG000221003 KO:K02986
ProtClustDB:PRK05327 OMA:THGHILV RefSeq:YP_181245.1
ProteinModelPortal:Q3Z954 STRING:Q3Z954 GeneID:3230221
KEGG:det:DET0501 PATRIC:21608071 BioCyc:DETH243164:GJNF-501-MONOMER
Uniprot:Q3Z954
Length = 207
Score = 311 (114.5 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 72/189 (38%), Positives = 104/189 (55%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGS--RTSDYGYQFRE 58
M+R G ++CRR G LFLK + +KC + RP G G R SD G Q R
Sbjct: 1 MSRETGAVCRMCRRSGDKLFLKGDK--CVTKCVFEKRPKAPGPQLGRPRRLSDRGQQLRH 58
Query: 59 KQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQL 118
KQ ++ YG+ E+QFRR+F G TG+ ++ LLE R DNV++R+GF ++R++ARQ+
Sbjct: 59 KQSIRWSYGMTERQFRRFFGLATAQPGVTGDNMMILLERRLDNVLFRLGFGTSRAQARQI 118
Query: 119 ISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
+ H LVN + +I SY +K G I+VRE +K E E W+++D K
Sbjct: 119 VMHGHILVNGQKTDIPSYLVKEGQEITVRETSKATAYFKTLAENIEAKAIPGWLSLDRKT 178
Query: 179 MEGVFKSEP 187
+ G S P
Sbjct: 179 LSGKVISLP 187
>TIGR_CMR|SPO_0512 [details] [associations]
symbol:SPO_0512 "ribosomal protein L17" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_01368
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
HSSP:Q9Z9H5 eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 ProtClustDB:PRK05591 OMA:SHQKAIF
RefSeq:YP_165774.1 ProteinModelPortal:Q5LW31 SMR:Q5LW31
GeneID:3195334 KEGG:sil:SPO0512 PATRIC:23374287 Uniprot:Q5LW31
Length = 140
Score = 304 (112.1 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 63/118 (53%), Positives = 79/118 (66%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH G+R+LNRT HR + NM SL+ +E IKTTLPKAKELR +VE ++TL K+ L
Sbjct: 1 MRHARGYRRLNRTHEHRKALFANMAGSLIEHEQIKTTLPKAKELRPIVEKLITLGKRGDL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+R A + L++ K KLF L RY GGYVRILK GFR GD APMA IE +++
Sbjct: 61 HARRQAAAQLKEDKDVAKLFDVLAERYKDRQGGYVRILKAGFRYGDMAPMAIIEFVDR 118
>UNIPROTKB|P0C486 [details] [associations]
symbol:rps4 "30S ribosomal protein S4, chloroplastic"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 GO:GO:0009536 GO:GO:0009570
GO:GO:0016020 GO:GO:0006412 EMBL:AY522331 GO:GO:0003735
GO:GO:0019843 GO:GO:0015935 Gene3D:3.10.290.10 InterPro:IPR022801
PANTHER:PTHR11831 ProtClustDB:CHL00113 Gene3D:1.10.1050.10
HAMAP:MF_01306_B TIGRFAMs:TIGR01017 RefSeq:NP_039385.1
ProteinModelPortal:P0C486 SMR:P0C486 PRIDE:P0C486 GeneID:3131457
KEGG:osa:3131457 Gramene:P0C486 HOGENOM:HOG000221003 KO:K02986
Genevestigator:P0C486 Uniprot:P0C486
Length = 201
Score = 303 (111.7 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 72/200 (36%), Positives = 114/200 (57%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M+RY GP+ K RR G L R K +L+ H SG + Y + +EKQ
Sbjct: 1 MSRYRGPRFKKIRRLGA---LPGLTRKTP-KSGSNLKKKFH---SGKK-EQYRIRLQEKQ 52
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++ YG+ E+Q RY + K TG+++L+LLE R DN+++R+G +ST EARQL++
Sbjct: 53 KLRFHYGLTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVN 112
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR LVN +IV+I S++ KP DII+ ++ + + + NS+ S+ +T+D + +
Sbjct: 113 HRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYK 172
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K +R IN+LL
Sbjct: 173 GLVKKILDRKWVGLKINELL 192
>UNIPROTKB|P0C487 [details] [associations]
symbol:rps4 "30S ribosomal protein S4, chloroplastic"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR001912 InterPro:IPR002942
InterPro:IPR005709 InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479
PROSITE:PS00632 PROSITE:PS50889 SMART:SM00363 GO:GO:0009536
GO:GO:0009570 GO:GO:0016020 GO:GO:0006412 EMBL:AY522329
GO:GO:0003735 GO:GO:0019843 GO:GO:0015935 Gene3D:3.10.290.10
InterPro:IPR022801 PANTHER:PTHR11831 ProtClustDB:CHL00113
Gene3D:1.10.1050.10 HAMAP:MF_01306_B TIGRFAMs:TIGR01017
RefSeq:YP_654216.1 ProteinModelPortal:P0C487 SMR:P0C487
PRIDE:P0C487 GeneID:4126886 Gramene:P0C487 Uniprot:P0C487
Length = 201
Score = 303 (111.7 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 72/200 (36%), Positives = 114/200 (57%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M+RY GP+ K RR G L R K +L+ H SG + Y + +EKQ
Sbjct: 1 MSRYRGPRFKKIRRLGA---LPGLTRKTP-KSGSNLKKKFH---SGKK-EQYRIRLQEKQ 52
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++ YG+ E+Q RY + K TG+++L+LLE R DN+++R+G +ST EARQL++
Sbjct: 53 KLRFHYGLTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVN 112
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR LVN +IV+I S++ KP DII+ ++ + + + NS+ S+ +T+D + +
Sbjct: 113 HRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYK 172
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K +R IN+LL
Sbjct: 173 GLVKKILDRKWVGLKINELL 192
>UNIPROTKB|P0C488 [details] [associations]
symbol:rps4 "30S ribosomal protein S4, chloroplastic"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR001912 InterPro:IPR002942
InterPro:IPR005709 InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479
PROSITE:PS00632 PROSITE:PS50889 SMART:SM00363 GO:GO:0009536
GO:GO:0009570 GO:GO:0016020 GO:GO:0006412 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR GO:GO:0003735 GO:GO:0019843 EMBL:AC074232
GO:GO:0015935 Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 ProtClustDB:CHL00113 Gene3D:1.10.1050.10
HAMAP:MF_01306_B TIGRFAMs:TIGR01017 RefSeq:NP_039385.1
GeneID:3131457 KEGG:osa:3131457 KO:K02986 PIR:JQ0225
ProteinModelPortal:P0C488 SMR:P0C488 STRING:P0C488
EnsemblPlants:LOC_Os04g16738.1 EnsemblPlants:LOC_Os04g16764.1
EnsemblPlants:LOC_Os10g38214.1 EnsemblPlants:LOC_Osp1g00360.1
Gramene:P0C488 OMA:ASYQCKP Uniprot:P0C488
Length = 201
Score = 303 (111.7 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 72/200 (36%), Positives = 114/200 (57%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M+RY GP+ K RR G L R K +L+ H SG + Y + +EKQ
Sbjct: 1 MSRYRGPRFKKIRRLGA---LPGLTRKTP-KSGSNLKKKFH---SGKK-EQYRIRLQEKQ 52
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++ YG+ E+Q RY + K TG+++L+LLE R DN+++R+G +ST EARQL++
Sbjct: 53 KLRFHYGLTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVN 112
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR LVN +IV+I S++ KP DII+ ++ + + + NS+ S+ +T+D + +
Sbjct: 113 HRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYK 172
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K +R IN+LL
Sbjct: 173 GLVKKILDRKWVGLKINELL 192
>UNIPROTKB|Q6ENH2 [details] [associations]
symbol:rps4 "30S ribosomal protein S4, chloroplastic"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 GO:GO:0009507 GO:GO:0009536
GO:GO:0006412 GO:GO:0003735 GO:GO:0019843 EMBL:AP006728
GO:GO:0015935 Gene3D:3.10.290.10 InterPro:IPR022801
PANTHER:PTHR11831 RefSeq:YP_052751.1 ProteinModelPortal:Q6ENH2
SMR:Q6ENH2 GeneID:2885947 Gramene:Q6ENH2 ProtClustDB:CHL00113
Gene3D:1.10.1050.10 HAMAP:MF_01306_B TIGRFAMs:TIGR01017
Uniprot:Q6ENH2
Length = 201
Score = 303 (111.7 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 72/200 (36%), Positives = 114/200 (57%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M+RY GP+ K RR G L R K +L+ H SG + Y + +EKQ
Sbjct: 1 MSRYRGPRFKKIRRLGA---LPGLTRKTP-KSGSNLKKKFH---SGKK-EQYRIRLQEKQ 52
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K++ YG+ E+Q RY + K TG+++L+LLE R DN+++R+G +ST EARQL++
Sbjct: 53 KLRFHYGLTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVN 112
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
HR LVN +IV+I S++ KP DII+ ++ + + + NS+ S+ +T+D + +
Sbjct: 113 HRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYK 172
Query: 181 GVFKSEPNRSEFANDINDLL 200
G+ K +R IN+LL
Sbjct: 173 GLVKKILDRKWVGLKINELL 192
>TIGR_CMR|GSU_2830 [details] [associations]
symbol:GSU_2830 "ribosomal protein L17" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_01368
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
HSSP:Q9Z9H5 eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 ProtClustDB:PRK05591 RefSeq:NP_953873.1
ProteinModelPortal:Q749B4 SMR:Q749B4 GeneID:2686840
KEGG:gsu:GSU2830 PATRIC:22028505 OMA:SHQKAIF
BioCyc:GSUL243231:GH27-2782-MONOMER Uniprot:Q749B4
Length = 175
Score = 301 (111.0 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 60/118 (50%), Positives = 80/118 (67%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH R+L RT+SHR+ M RNM SL +E I TT KAKELR + E ++TL K+ L
Sbjct: 1 MRHNKAGRRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
R A SY+RD+K+ KLFS + PRY + +GGY RI+K+G R GD AP++ IEL+ +
Sbjct: 61 HAVRQAASYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEE 118
>TIGR_CMR|ECH_0433 [details] [associations]
symbol:ECH_0433 "ribosomal protein L17" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 ProtClustDB:PRK05591 OMA:LIMNERI
RefSeq:YP_507251.1 ProteinModelPortal:Q2GH32 SMR:Q2GH32
STRING:Q2GH32 GeneID:3927393 KEGG:ech:ECH_0433 PATRIC:20576343
BioCyc:ECHA205920:GJNR-434-MONOMER Uniprot:Q2GH32
Length = 133
Score = 293 (108.2 bits), Expect = 3.0e-25, P = 3.0e-25
Identities = 63/122 (51%), Positives = 83/122 (68%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSK---- 485
MRHR RK +RTS+HR+ ML N+ ISL+++E I TTLPKAKE+R VE ++T+ K
Sbjct: 1 MRHRVAHRKFSRTSAHRMSMLLNLCISLIKHERISTTLPKAKEIRPYVEKLITIGKVYKE 60
Query: 486 KNTLSNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545
KN + KRL S +++ I KL L RY NGGY RI+K GFR GD+APMA IEL+
Sbjct: 61 KNLVYGKRLLISKIKNPDIADKLIGILSVRYKSRNGGYTRIIKNGFRKGDSAPMAIIELV 120
Query: 546 NQ 547
++
Sbjct: 121 DR 122
>TIGR_CMR|CJE_1768 [details] [associations]
symbol:CJE_1768 "ribosomal protein L17" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] HAMAP:MF_01368 InterPro:IPR000456
Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735 HSSP:Q9Z9H5
eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
ProtClustDB:PRK05591 OMA:LIMNERI RefSeq:YP_179740.1
ProteinModelPortal:Q5HSJ5 STRING:Q5HSJ5 GeneID:3232395
KEGG:cjr:CJE1768 PATRIC:20045346
BioCyc:CJEJ195099:GJC0-1798-MONOMER Uniprot:Q5HSJ5
Length = 117
Score = 289 (106.8 bits), Expect = 8.3e-25, P = 8.3e-25
Identities = 58/116 (50%), Positives = 80/116 (68%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH+HG+RKL RTSSHR +L+N+TI+L+ I+TTLPKAKELR VE ++T ++
Sbjct: 1 MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKELRGYVERLITRARLGDF 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545
+ R F+ L+D+ T KL +E+ P++ NGGY RI+K R GD A MAFIE +
Sbjct: 61 NAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRIRRGDAAEMAFIEFV 116
>TIGR_CMR|ECH_0912 [details] [associations]
symbol:ECH_0912 "ribosomal protein S4" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
GO:GO:0003735 GO:GO:0019843 GO:GO:0015935 Gene3D:3.10.290.10
eggNOG:COG0522 InterPro:IPR022801 PANTHER:PTHR11831
Gene3D:1.10.1050.10 HAMAP:MF_01306_B TIGRFAMs:TIGR01017 KO:K02986
HOGENOM:HOG000221004 OMA:YRCKPGD ProtClustDB:PRK05327
RefSeq:YP_507703.1 ProteinModelPortal:Q2GFT0 STRING:Q2GFT0
GeneID:3927699 KEGG:ech:ECH_0912 PATRIC:20577222
BioCyc:ECHA205920:GJNR-915-MONOMER Uniprot:Q2GFT0
Length = 202
Score = 287 (106.1 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 65/171 (38%), Positives = 98/171 (57%)
Query: 8 KAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYG 67
K + RR G++L+ RS D + PGQHG + + SD+G QF +K K Y
Sbjct: 6 KYRASRRLGVNLW----GRSKDPFNTRNYPPGQHGGMGYKKPSDFGKQFAAHKKFKFYYA 61
Query: 68 ILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVN 127
I KQ R F++ + +G TG+ + LLESR +V+Y G T ARQLISH+ LVN
Sbjct: 62 INSKQMRNIFLKAYKKRGDTGDNFVGLLESRLSSVLYNSGLVPTIFSARQLISHKHVLVN 121
Query: 128 KKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKK 178
K VNI+SY +K GD+++++EKAK + +++ E P ++ VD ++
Sbjct: 122 GKTVNISSYVVKVGDVVTLKEKAKNLPAVVFAVQSQEQKVP-DYLEVDTQE 171
>TIGR_CMR|NSE_0289 [details] [associations]
symbol:NSE_0289 "DNA-directed RNA polymerase, alpha
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 ProtClustDB:PRK05182 SUPFAM:SSF47789
TIGRFAMs:TIGR02027 RefSeq:YP_506180.1 ProteinModelPortal:Q2GEB6
SMR:Q2GEB6 STRING:Q2GEB6 GeneID:3931778 KEGG:nse:NSE_0289
PATRIC:22680671 OMA:QHEFATI BioCyc:NSEN222891:GHFU-316-MONOMER
Uniprot:Q2GEB6
Length = 333
Score = 206 (77.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 59/169 (34%), Positives = 92/169 (54%)
Query: 215 AKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEGVQEDIIDIIL 274
A+ I+EP G+G T+GNA+RRVLLSS+ G A + V I G HE+S + GV+ED D+ L
Sbjct: 30 AEFIVEPLRVGFGLTIGNAMRRVLLSSLSGFAISAVGIKGLTHEFSCIPGVREDFADLAL 89
Query: 275 NLKGVILK-LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIAHLSDNEEAIRQ 333
NLK V+LK + L+L V ++ I D E+VN + +I +++ E +
Sbjct: 90 NLKKVVLKSISGATCGNLHLSVTDGGAVFSNMISPSHDFEVVNGDLLICNVA---EGVSL 146
Query: 334 SARVLVDQLNVFAALENTPVKKELDSSLEKVDPI--LLRPVDDLELTVR 380
+ V + F + + V+K+ + LE PI + PV + TV+
Sbjct: 147 EMEMKVS--SGFGYVSSVSVRKD-EYDLEGAVPIDAIYNPVRAVNFTVK 192
Score = 138 (53.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 367 ILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
+L +D L L+ R+ CL ENI I DL+ R+E +LL+ PN GR+SL E+K+ L S+G
Sbjct: 263 LLSARIDRLYLSARARKCLNGENIVYIRDLVSRTEADLLKAPNFGRRSLEEVKKELFSKG 322
>TIGR_CMR|APH_0989 [details] [associations]
symbol:APH_0989 "ribosomal protein S4" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
InterPro:IPR018079 Pfam:PF00163 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 GO:GO:0006412 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843 GO:GO:0015935
Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 Gene3D:1.10.1050.10 HAMAP:MF_01306_B
TIGRFAMs:TIGR01017 KO:K02986 RefSeq:YP_505552.1
ProteinModelPortal:Q2GJ99 STRING:Q2GJ99 GeneID:3930826
KEGG:aph:APH_0989 PATRIC:20950708 HOGENOM:HOG000221004 OMA:YRCKPGD
ProtClustDB:PRK05327 BioCyc:APHA212042:GHPM-999-MONOMER
Uniprot:Q2GJ99
Length = 204
Score = 285 (105.4 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 65/191 (34%), Positives = 103/191 (53%)
Query: 1 MARYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQ 60
M + K + RR G++L+ RS D + PGQHG + + S +G QF Q
Sbjct: 1 MVAVVNRKYRASRRLGVNLW----GRSKDPFNTRNYPPGQHGAMGYKKLSSFGRQFVAHQ 56
Query: 61 KVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLIS 120
K K Y + +Q R F++ R KG TG+ ++ LESR +VVY G T ARQL+S
Sbjct: 57 KFKCYYVVSSRQLRNVFLKAYRKKGDTGDNLVGALESRLASVVYSAGLVPTMFSARQLVS 116
Query: 121 HRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKME 180
H+ VN ++VNI S+ +KPGDI+ VR++A + + +++ E P + V+ +K+
Sbjct: 117 HKHVTVNGRVVNIPSFSVKPGDIVEVRKRASQLPMVLAAIQSQERRVP-DHLDVNTEKLS 175
Query: 181 GVFKSEPNRSE 191
+ + P S+
Sbjct: 176 VKYLAVPKYSD 186
>TIGR_CMR|CJE_1767 [details] [associations]
symbol:CJE_1767 "DNA-directed RNA polymerase, alpha
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000218481 KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 RefSeq:YP_179739.1
ProteinModelPortal:Q5HSJ6 STRING:Q5HSJ6 GeneID:3232394
KEGG:cjr:CJE1767 PATRIC:20045344
BioCyc:CJEJ195099:GJC0-1797-MONOMER Uniprot:Q5HSJ6
Length = 337
Score = 182 (69.1 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 42/129 (32%), Positives = 69/129 (53%)
Query: 202 PRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSS 261
P ++ + AK+ PFE GYG TL + LRR+L +S IG APT + I G HE+ S
Sbjct: 11 PTEFTIENISDTVAKISAWPFEIGYGITLAHPLRRLLYTSTIGYAPTAIHIDGVAHEFDS 70
Query: 262 LEGVQEDIIDIILNLKGVILKLYNR-DYAILNLKKFGKCVVLASDIELLSDIELVNPNHI 320
+ G+ ED+ I+NLK + K+ + I+ G + D+ +E+VN +
Sbjct: 71 MRGMLEDVALFIINLKKLRFKIKGESNKEIVEFSFKGSKEIYGKDLNN-DQVEVVNKDAY 129
Query: 321 IAHLSDNEE 329
+A ++++ E
Sbjct: 130 LATINEDAE 138
Score = 151 (58.2 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 47/132 (35%), Positives = 70/132 (53%)
Query: 307 ELLSDIELV----NPNH---IIAHLSDNE----EAIRQSARVLVDQLNVFAALENT-PVK 354
E DIE V NP++ ++ +D + EA + + + QL+VF + N V
Sbjct: 178 EATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALEAMYKQLSVFDKITNVRSVI 237
Query: 355 KELDSSLEKVDPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKS 414
K +S E + LL+ + DL L+ RS NCL+ + IG+L S +EL NLG+KS
Sbjct: 238 KNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYIGELALMSVSELAGLKNLGKKS 297
Query: 415 LNEIKEILASRG 426
L+EIK I+ S G
Sbjct: 298 LDEIKNIMESIG 309
>TIGR_CMR|APH_0304 [details] [associations]
symbol:APH_0304 "ribosomal protein L17" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_01368
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
RefSeq:YP_504916.1 ProteinModelPortal:Q2GL35 SMR:Q2GL35
STRING:Q2GL35 GeneID:3930381 KEGG:aph:APH_0304 PATRIC:20949182
OMA:MRHQLRI ProtClustDB:PRK05591 BioCyc:APHA212042:GHPM-334-MONOMER
Uniprot:Q2GL35
Length = 132
Score = 259 (96.2 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 57/126 (45%), Positives = 82/126 (65%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSK---- 485
MRH +RK +R ++HR+ M+ N+ +SL+ E I TTLPKAK+LR VVE ++T++K
Sbjct: 1 MRHGVSYRKFSRPTAHRMAMMMNLAVSLVTSERIVTTLPKAKDLRSVVEGLITIAKRYSQ 60
Query: 486 KNTLSNKRLAFSYLR-DRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIEL 544
K+ + +RL S + +T KL L RY NGGY RI+K GFR GD AP+A IEL
Sbjct: 61 KDPVCGRRLLLSRTSGNSSVTNKLLGVLAQRYKNRNGGYTRIMKNGFRKGDCAPIAIIEL 120
Query: 545 LNQTKN 550
+++ K+
Sbjct: 121 VDREKD 126
>DICTYBASE|DDB_G0281435 [details] [associations]
symbol:mrpl17 "ribosomal protein L17, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000456 Pfam:PF01196
PROSITE:PS01167 dictyBase:DDB_G0281435 GO:GO:0005739
GenomeReviews:CM000152_GR GO:GO:0006412 GO:GO:0005840
EMBL:AAFI02000041 GO:GO:0003735 HSSP:Q9Z9H5 eggNOG:COG0203
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 RefSeq:XP_640676.1 ProteinModelPortal:Q54TY5
STRING:Q54TY5 PRIDE:Q54TY5 EnsemblProtists:DDB0267020
GeneID:8623060 KEGG:ddi:DDB_G0281435 OMA:TIAKRNT
ProtClustDB:CLSZ2430548 Uniprot:Q54TY5
Length = 182
Score = 258 (95.9 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 53/114 (46%), Positives = 74/114 (64%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
M H KL R S HR++MLR M L+R+E IKTTL KAK LR+ + I+T++K+NT
Sbjct: 1 MYHGQKLAKLGRESHHRMLMLRTMVTQLIRHERIKTTLAKAKALRKEADRIITIAKRNTR 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIE 543
+ L +SY+ D+++ KLF EL R+ GGY R+LK G R+ D + MA+IE
Sbjct: 61 LSHSLVYSYVTDKQVIPKLFKELRLRFGDRPGGYTRVLKAGSRLSDRSKMAYIE 114
>TAIR|locus:2144821 [details] [associations]
symbol:AT5G09770 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA]
[GO:0009086 "methionine biosynthetic process" evidence=RCA]
HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
HSSP:Q9Z9H5 HOGENOM:HOG000019780 KO:K02879 ProtClustDB:CLSN2685085
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 EMBL:AY086225 EMBL:BT003108 EMBL:AK228114
IPI:IPI00524280 RefSeq:NP_568216.1 UniGene:At.32461
UniGene:At.72723 ProteinModelPortal:Q8LD39 SMR:Q8LD39 IntAct:Q8LD39
STRING:Q8LD39 PRIDE:Q8LD39 EnsemblPlants:AT5G09770.1 GeneID:830837
KEGG:ath:AT5G09770 TAIR:At5g09770 InParanoid:Q8LD39 OMA:DATEMAI
PhylomeDB:Q8LD39 Genevestigator:Q8LD39 Uniprot:Q8LD39
Length = 160
Score = 247 (92.0 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 50/112 (44%), Positives = 75/112 (66%)
Query: 436 FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLA 495
FRKL R + HR+ MLR M L+++E I+TT+ KAKE+RR+ + ++ L K+ +LS R A
Sbjct: 4 FRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRA 63
Query: 496 FSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
++R + K+F+EL RY GGY R+L+ RVGD APMA+IE +++
Sbjct: 64 AGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDR 115
>TIGR_CMR|DET_0502 [details] [associations]
symbol:DET_0502 "DNA-directed RNA polymerase, alpha
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003899
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
KO:K03040 OMA:GKKSYDE ProtClustDB:PRK05182 SUPFAM:SSF47789
TIGRFAMs:TIGR02027 HOGENOM:HOG000218480 RefSeq:YP_181246.1
ProteinModelPortal:Q3Z953 STRING:Q3Z953 GeneID:3230220
KEGG:det:DET0502 PATRIC:21608073 BioCyc:DETH243164:GJNF-502-MONOMER
Uniprot:Q3Z953
Length = 330
Score = 245 (91.3 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 58/159 (36%), Positives = 92/159 (57%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
++DL P I ++ G + + ++EP E+G+G T+GN+LRR+LLS + G A T V I G
Sbjct: 1 MSDLAIPTISCTESDGK-YGRFVVEPLEKGFGTTMGNSLRRILLSYLDGVAITRVRIDGI 59
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
HE+S+L +ED +D +LNLK + ++ + IL LK G VV A+DIE +D E+V
Sbjct: 60 QHEFSALPKAKEDTLDFLLNLKNIRVESLSGLEGILYLKASGAKVVTAADIEPSNDFEVV 119
Query: 316 NPNHIIAHLSDNEEAIRQSARVLVDQ-LNVFAALENTPV 353
NP + L ++ + V + + + ENTP+
Sbjct: 120 NPELYLLTLDSDDAVLNVELEVELGRGYRAPESTENTPI 158
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 38/103 (36%), Positives = 59/103 (57%)
Query: 330 AIRQSARVLVDQLNVFAAL-ENTPVKKELDSSLEKVDPILLR-----PVDDLELTVRSAN 383
A+ +SA +LV Q FAAL + V E+++S E V + P++ L+L+VR+ N
Sbjct: 206 AVSRSADILVKQ---FAALVSHNKVVAEVEAS-EPVKYAIPEEKYNMPIEQLDLSVRAVN 261
Query: 384 CLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILASRG 426
CL+ I +G++I R ELL N G KSL E+++ L + G
Sbjct: 262 CLRHAGITTVGEVINRGTKELLTLRNFGLKSLTELEDRLKTIG 304
>TAIR|locus:2080335 [details] [associations]
symbol:AT3G54210 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 GO:GO:0009570
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AL132957
EMBL:BT000413 EMBL:AY136290 EMBL:AY124804 EMBL:AF375425
EMBL:AY086449 IPI:IPI00543640 PIR:T47580 RefSeq:NP_190989.1
UniGene:At.27695 HSSP:Q9Z9H5 ProteinModelPortal:Q9M385 SMR:Q9M385
STRING:Q9M385 PaxDb:Q9M385 PRIDE:Q9M385 EnsemblPlants:AT3G54210.1
GeneID:824588 KEGG:ath:AT3G54210 GeneFarm:90 TAIR:At3g54210
eggNOG:COG0203 HOGENOM:HOG000019780 InParanoid:Q9M385 KO:K02879
OMA:PPDQRKA PhylomeDB:Q9M385 ProtClustDB:CLSN2685085
Genevestigator:Q9M385 GermOnline:AT3G54210 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 Uniprot:Q9M385
Length = 211
Score = 244 (91.0 bits), Expect = 6.7e-20, P = 6.7e-20
Identities = 53/127 (41%), Positives = 80/127 (62%)
Query: 420 EILASRGKYY-MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVE 478
+I+ G+ Y MRH KLNR R +LR +T LL++ IKTT +A +R+ V+
Sbjct: 85 KIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVD 144
Query: 479 PILTLSKKNTLSNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAP 538
++TL+K +L +R A Y+ +++I LF+E+ RY + NGGY RI++ R GDNAP
Sbjct: 145 KMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAP 204
Query: 539 MAFIELL 545
MA+IEL+
Sbjct: 205 MAYIELV 211
>TIGR_CMR|NSE_0583 [details] [associations]
symbol:NSE_0583 "ribosomal protein S4" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709
Pfam:PF01479 PROSITE:PS00632 PROSITE:PS50889 SMART:SM00363
GO:GO:0006412 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0015935 Gene3D:3.10.290.10
eggNOG:COG0522 InterPro:IPR022801 PANTHER:PTHR11831
Gene3D:1.10.1050.10 HAMAP:MF_01306_B TIGRFAMs:TIGR01017 KO:K02986
HOGENOM:HOG000221004 OMA:YRCKPGD ProtClustDB:PRK05327
RefSeq:YP_506463.1 ProteinModelPortal:Q2GDI3 STRING:Q2GDI3
GeneID:3931527 KEGG:nse:NSE_0583 PATRIC:22681207
BioCyc:NSEN222891:GHFU-599-MONOMER Uniprot:Q2GDI3
Length = 205
Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 56/147 (38%), Positives = 85/147 (57%)
Query: 33 KLDLRPGQHGRISGSRTSDYGYQFREKQKVKRMYGIL-EKQFRRYFIEGARLKGKTGEII 91
K + PGQHGR + SD+ Y+ Q+ R Y ++ +KQF F + R KG T + +
Sbjct: 29 KRNYAPGQHGRAPVKKISDF-YKQNAAQRAFRTYYVIGKKQFANVFSKAYRGKGNTNDNL 87
Query: 92 LKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAK 151
+ LLESR +V+YR G T ARQLISH+ VN +IVNI S+ +K GD++ +R++A
Sbjct: 88 ISLLESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLKEGDVVQIRDRAS 147
Query: 152 KQTRIANSLELSEHSTPFSWITVDAKK 178
+ +L S +P ++ VD +K
Sbjct: 148 NIPCVVAALN-SNSESPH-YLEVDREK 172
>TAIR|locus:2174804 [details] [associations]
symbol:AT5G64650 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] HAMAP:MF_01368
InterPro:IPR000456 Pfam:PF01196 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879
ProtClustDB:CLSN2685085 Gene3D:3.90.1030.10 PANTHER:PTHR14413
SUPFAM:SSF64263 TIGRFAMs:TIGR00059 EMBL:BT025732 IPI:IPI00519064
RefSeq:NP_568992.1 UniGene:At.22735 ProteinModelPortal:Q1ECK2
SMR:Q1ECK2 STRING:Q1ECK2 PaxDb:Q1ECK2 EnsemblPlants:AT5G64650.1
GeneID:836586 KEGG:ath:AT5G64650 TAIR:At5g64650 InParanoid:Q1ECK2
OMA:YATREGG PhylomeDB:Q1ECK2 Genevestigator:Q1ECK2 Uniprot:Q1ECK2
Length = 160
Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 49/112 (43%), Positives = 75/112 (66%)
Query: 436 FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLA 495
FRKL R + HR+ MLR M L+++E I+TT+ KAKE+RR+ + ++ L K+ +L+ R A
Sbjct: 4 FRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRA 63
Query: 496 FSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
++R + K+F+EL RY GGY R+L+ RVGD APMA+IE +++
Sbjct: 64 AGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDR 115
>TIGR_CMR|CHY_2280 [details] [associations]
symbol:CHY_2280 "ribosomal protein L17" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196
PROSITE:PS01167 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0203
HOGENOM:HOG000019780 KO:K02879 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 OMA:MRHQLRI
RefSeq:YP_361089.1 HSSP:Q9NRX2 ProteinModelPortal:Q3A9U5
STRING:Q3A9U5 GeneID:3727578 KEGG:chy:CHY_2280 PATRIC:21277631
BioCyc:CHYD246194:GJCN-2279-MONOMER Uniprot:Q3A9U5
Length = 112
Score = 238 (88.8 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 50/108 (46%), Positives = 67/108 (62%)
Query: 438 KLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFS 497
KL R HR MLRN+ SLL+ I TT + K + V E ++TL+K +TL N+R A +
Sbjct: 5 KLGRRKDHREAMLRNLVTSLLKEGKIITTEARGKSAKAVAEKLITLAKNDTLHNRRQALA 64
Query: 498 YLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545
YL + + KLF E+GP+Y GGY RI+K+G R GD A M +ELL
Sbjct: 65 YLYEENVVRKLFKEIGPKYADRPGGYTRIVKIGPRRGDGAMMVLVELL 112
>TIGR_CMR|NSE_0290 [details] [associations]
symbol:NSE_0290 "ribosomal protein L17" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0203 HOGENOM:HOG000019780
KO:K02879 Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 RefSeq:YP_506181.1 ProteinModelPortal:Q2GEB5
STRING:Q2GEB5 GeneID:3931555 KEGG:nse:NSE_0290 PATRIC:22680673
OMA:ISDNSEV ProtClustDB:CLSK2528067
BioCyc:NSEN222891:GHFU-317-MONOMER Uniprot:Q2GEB5
Length = 117
Score = 232 (86.7 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 47/117 (40%), Positives = 78/117 (66%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSK-KNT 488
M+HR +L+R SSHR+ ++ N+++S++ + ++TTL KA+ LR +E ++T ++ ++
Sbjct: 1 MKHRVKKHRLSRNSSHRMSLICNLSVSIIEHGRLQTTLAKARALRPFIEKLITKARVPDS 60
Query: 489 LSNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545
LS +RL S +++ KL +E+ RY GGY RI+K G+RVGD APMA IE +
Sbjct: 61 LSVRRLLLSRIKNEAAVTKLINEVARRYTDRPGGYCRIVKTGYRVGDAAPMAIIEFV 117
>UNIPROTKB|P0A5V4 [details] [associations]
symbol:rplQ "50S ribosomal protein L17" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01368
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 GO:GO:0005886
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842583 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0203 HOGENOM:HOG000019780 KO:K02879
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 ProtClustDB:PRK05591 OMA:SHQKAIF PIR:E70565
RefSeq:NP_217973.1 RefSeq:NP_338088.1 RefSeq:YP_006516945.1
ProteinModelPortal:P0A5V4 SMR:P0A5V4 PhosSite:P12071645
PRIDE:P0A5V4 EnsemblBacteria:EBMYCT00000002615
EnsemblBacteria:EBMYCT00000069665 GeneID:13317063 GeneID:887523
GeneID:926627 KEGG:mtc:MT3563 KEGG:mtu:Rv3456c KEGG:mtv:RVBD_3456c
PATRIC:18129563 TubercuList:Rv3456c Uniprot:P0A5V4
Length = 180
Score = 230 (86.0 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 48/110 (43%), Positives = 69/110 (62%)
Query: 438 KLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFS 497
+L +SSH+ +L N+ SL + I TT PKA+ LR E ++T +KK L N+R
Sbjct: 9 RLGGSSSHQKAILANLATSLFEHGRITTTEPKARALRPYAEKLITHAKKGALHNRREVLK 68
Query: 498 YLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
LRD+ + LF+E+GP + +GGY RI+K+ R GDNAPMA IEL+ +
Sbjct: 69 KLRDKDVVHTLFAEIGPFFADRDGGYTRIIKIEARKGDNAPMAVIELVRE 118
>ASPGD|ASPL0000055909 [details] [associations]
symbol:AN1348 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0000002 "mitochondrial
genome maintenance" evidence=IEA] HAMAP:MF_01368 InterPro:IPR000456
Pfam:PF01196 PROSITE:PS01167 EMBL:BN001308 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AACD01000018 eggNOG:COG0203
HOGENOM:HOG000019780 Gene3D:3.90.1030.10 PANTHER:PTHR14413
SUPFAM:SSF64263 TIGRFAMs:TIGR00059 OMA:VDGPKDM OrthoDB:EOG4GMZ6J
RefSeq:XP_658952.1 ProteinModelPortal:Q5BDN2 STRING:Q5BDN2
EnsemblFungi:CADANIAT00001264 GeneID:2877126 KEGG:ani:AN1348.2
Uniprot:Q5BDN2
Length = 211
Score = 228 (85.3 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 50/116 (43%), Positives = 73/116 (62%)
Query: 436 FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLA 495
+R L+R SSHR +LRN+ SL ++E I TT KAKE +R+ E ++TL KKNT +++R A
Sbjct: 8 YRHLSRKSSHRQALLRNLVTSLFKHESITTTWAKAKEAQRLAEKLITLGKKNTETSRRTA 67
Query: 496 FS-YLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTKN 550
S + +I KLF L RY GGY R+L++ + D AP A +EL++ K+
Sbjct: 68 LSTFYTPHEILPKLFGPLRERYADRPGGYTRVLRVEPKKDDQAPSAILELVDGPKD 123
>TIGR_CMR|DET_0503 [details] [associations]
symbol:DET_0503 "ribosomal protein L17" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0203 HOGENOM:HOG000019780
KO:K02879 Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 OMA:MRHQLRI ProtClustDB:PRK05591 HSSP:Q9NRX2
RefSeq:YP_181247.1 ProteinModelPortal:Q3Z952 STRING:Q3Z952
GeneID:3230212 KEGG:det:DET0503 PATRIC:21608075
BioCyc:DETH243164:GJNF-503-MONOMER Uniprot:Q3Z952
Length = 117
Score = 225 (84.3 bits), Expect = 7.8e-18, P = 7.8e-18
Identities = 47/116 (40%), Positives = 71/116 (61%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRH RK +R + R+ + RN+ LL YE I + P+AKE+R + E ++TL KK TL
Sbjct: 1 MRHNVSGRKFDRPTGQRMSLYRNLVTDLLNYEEITISEPRAKEIRSMAEKMITLGKKGTL 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545
+++R A +++ I K+F +L RY + GGY R+ K+G R GD A M +EL+
Sbjct: 61 ASRRRALAFVYIPGIVDKVFEDLSKRYAERPGGYTRMTKLGPRQGDGAEMVKLELV 116
>TIGR_CMR|BA_0138 [details] [associations]
symbol:BA_0138 "ribosomal protein L17" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01368 InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 HSSP:Q9Z9H5 eggNOG:COG0203
HOGENOM:HOG000019780 KO:K02879 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
ProtClustDB:PRK05591 RefSeq:NP_842706.1 RefSeq:YP_016743.1
RefSeq:YP_026424.1 ProteinModelPortal:Q81VQ3 DNASU:1087068
EnsemblBacteria:EBBACT00000012873 EnsemblBacteria:EBBACT00000015715
EnsemblBacteria:EBBACT00000019230 GeneID:1087068 GeneID:2818247
GeneID:2851413 KEGG:ban:BA_0138 KEGG:bar:GBAA_0138 KEGG:bat:BAS0138
OMA:LIMNERI BioCyc:BANT260799:GJAJ-149-MONOMER
BioCyc:BANT261594:GJ7F-151-MONOMER Uniprot:Q81VQ3
Length = 120
Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 52/118 (44%), Positives = 73/118 (61%)
Query: 436 FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLA 495
+RKL RTS+ R MLR++ L+ E I+TT +AKELR VVE ++TL K+ L +R A
Sbjct: 3 YRKLGRTSAQRKAMLRDLATDLIINERIQTTETRAKELRSVVEKMITLGKRGDLHARRQA 62
Query: 496 FSYLRDRKITI--------KLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELL 545
+++R+ KLF+++ PRY + GGY RI K+G R GD APM IEL+
Sbjct: 63 AAFIRNEVANAETGQDALQKLFADVAPRYAERQGGYTRIAKIGPRRGDAAPMVIIELV 120
>POMBASE|SPBC1271.13 [details] [associations]
symbol:mrpl8 "mitochondrial ribosomal protein subunit L8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000002
"mitochondrial genome maintenance" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0032543 "mitochondrial translation" evidence=NAS]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 PomBase:SPBC1271.13
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 GO:GO:0000002 HSSP:Q9Z9H5 eggNOG:COG0203
HOGENOM:HOG000019780 Gene3D:3.90.1030.10 PANTHER:PTHR14413
SUPFAM:SSF64263 TIGRFAMs:TIGR00059 PIR:T39349 RefSeq:NP_595137.1
ProteinModelPortal:O94345 STRING:O94345 EnsemblFungi:SPBC1271.13.1
GeneID:2540205 KEGG:spo:SPBC1271.13 OMA:VDGPKDM OrthoDB:EOG4GMZ6J
NextBio:20801337 Uniprot:O94345
Length = 207
Score = 218 (81.8 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 49/118 (41%), Positives = 78/118 (66%)
Query: 436 FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKK-NTLSNKR- 493
+RKL RTS+HR +LRN+ SL+++E I+TT KAKE +R E ++T++K+ N +N++
Sbjct: 7 YRKLGRTSAHRQALLRNLVTSLVKHESIQTTWAKAKEAQRFAEKLITMAKRANPQNNRKG 66
Query: 494 LAFSYLRDRKITIK-LFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQTKN 550
LA + +++ T+K +F L PRY GY R+LK+ R DNAPM +E ++ K+
Sbjct: 67 LAEGMVFEKETTLKKVFDVLVPRYNGRRCGYTRLLKLPPRSTDNAPMGVLEFVDGPKD 124
>UNIPROTKB|Q2LIP1 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:4537 "Oryza
punctata" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289178
Gramene:Q2LIP1 Uniprot:Q2LIP1
Length = 317
Score = 170 (64.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 53/179 (29%), Positives = 90/179 (50%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRNASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
+L++ E+ R R+ D+ +T V+K +D + + PV ++ ++ S
Sbjct: 118 NLTEPED-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSIFS 168
Score = 94 (38.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIP0 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:4532 "Oryza
australiensis" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289179
Gramene:Q2LIP0 Uniprot:Q2LIP0
Length = 317
Score = 164 (62.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 52/179 (29%), Positives = 89/179 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRNASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
+L++ + R R+ D+ +T V+K +D + + PV ++ ++ S
Sbjct: 118 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSIFS 168
Score = 94 (38.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIP2 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:65491 "Oryza
rhizomatis" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289177
Gramene:Q2LIP2 Uniprot:Q2LIP2
Length = 317
Score = 164 (62.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 52/179 (29%), Positives = 89/179 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRNASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
+L++ + R R+ D+ +T V+K +D + + PV ++ ++ S
Sbjct: 118 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSIFS 168
Score = 94 (38.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIP3 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:4535 "Oryza
officinalis" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289176
Gramene:Q2LIP3 Uniprot:Q2LIP3
Length = 317
Score = 164 (62.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 52/179 (29%), Positives = 89/179 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRNASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
+L++ + R R+ D+ +T V+K +D + + PV ++ ++ S
Sbjct: 118 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSIFS 168
Score = 94 (38.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIN9 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:110450 "Oryza
granulata" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289180
Gramene:Q2LIN9 Uniprot:Q2LIN9
Length = 317
Score = 163 (62.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 54/180 (30%), Positives = 91/180 (50%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYN-RDYAILNLKKFGKCVVLASDIELLSDIELVNPNHII 321
++E + +I+LNLK ++L+ LY RD +I +K G + A DI L +E+V+ I
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRDASIC-VK--GPRYITAQDIILPPSVEIVDMAQPI 116
Query: 322 AHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRS 381
A+L++ + R R+ D+ +T V+K +D + + PV ++ ++ S
Sbjct: 117 ANLTEPMD-FRIELRIKRDRGY------HTEVRKNAQDGSYPIDAVSM-PVRNVNYSIFS 168
Score = 94 (38.1 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIP4 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:364099 "Oryza
sp. IRGC 81916" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289175
Gramene:Q2LIP4 Uniprot:Q2LIP4
Length = 317
Score = 163 (62.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 118 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 166
Score = 94 (38.1 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIP5 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:40148 "Oryza
glumipatula" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289174
Gramene:Q2LIP5 Uniprot:Q2LIP5
Length = 317
Score = 163 (62.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 118 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 166
Score = 94 (38.1 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIP6 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:4536 "Oryza
nivara" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 EMBL:DQ289173
Gramene:Q2LIP6 Uniprot:Q2LIP6
Length = 317
Score = 163 (62.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 118 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 166
Score = 94 (38.1 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|Q2LIP8 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:4530 "Oryza
sativa" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0009295 GO:GO:0003899 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027
EMBL:DQ289170 EMBL:DQ289171 Gramene:Q2LIP8 Genevestigator:Q2LIP8
Uniprot:Q2LIP8
Length = 317
Score = 163 (62.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 118 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 166
Score = 94 (38.1 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>UNIPROTKB|P0C498 [details] [associations]
symbol:rpoA "DNA-directed RNA polymerase subunit alpha"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522331 GO:GO:0009295
GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
KO:K03040 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 HOGENOM:HOG000218480
ProtClustDB:CHL00013 RefSeq:NP_039417.1 ProteinModelPortal:P0C498
GeneID:3131431 KEGG:osa:3131431 Gramene:P0C498
Genevestigator:P0C498 Uniprot:P0C498
Length = 337
Score = 163 (62.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 22 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 79
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 80 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 137
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 138 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 186
Score = 94 (38.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 274 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 324
>UNIPROTKB|P0C499 [details] [associations]
symbol:rpoA "DNA-directed RNA polymerase subunit alpha"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 GO:GO:0009295
GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
SUPFAM:SSF47789 TIGRFAMs:TIGR02027 ProtClustDB:CHL00013
RefSeq:YP_654235.1 ProteinModelPortal:P0C499 GeneID:4126898
Gramene:P0C499 Uniprot:P0C499
Length = 337
Score = 163 (62.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 22 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 79
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 80 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 137
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 138 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 186
Score = 94 (38.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 274 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 324
>UNIPROTKB|P0C500 [details] [associations]
symbol:rpoA "DNA-directed RNA polymerase subunit alpha"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899 EMBL:AP005161
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
KO:K03040 SUPFAM:SSF47789 TIGRFAMs:TIGR02027 ProtClustDB:CHL00013
RefSeq:NP_039417.1 GeneID:3131431 KEGG:osa:3131431 PIR:JQ0258
ProteinModelPortal:P0C500 STRING:P0C500
EnsemblPlants:LOC_Os04g16842.1 EnsemblPlants:LOC_Os08g15288.1
EnsemblPlants:LOC_Osp1g00660.1 Gramene:P0C500 OMA:QYIATIS
Uniprot:P0C500
Length = 337
Score = 163 (62.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 22 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 79
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 80 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 137
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 138 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 186
Score = 94 (38.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 274 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 324
>UNIPROTKB|Q6ENE2 [details] [associations]
symbol:rpoA "DNA-directed RNA polymerase subunit alpha"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_00059 InterPro:IPR009025 InterPro:IPR011260
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
InterPro:IPR011773 Pfam:PF01000 Pfam:PF01193 Pfam:PF03118
ProDom:PD001179 SMART:SM00662 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AP006728 GO:GO:0003899
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 SUPFAM:SSF47789
TIGRFAMs:TIGR02027 RefSeq:YP_052781.1 ProteinModelPortal:Q6ENE2
GeneID:2885961 Gramene:Q6ENE2 ProtClustDB:CHL00013 Uniprot:Q6ENE2
Length = 337
Score = 163 (62.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 22 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 79
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 80 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 137
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTV 379
+L++ + R R+ D+ +T V+K +D + + PV ++ ++
Sbjct: 138 NLTEPTD-FRIELRIKRDRGY------HTEVRKNTQDGSYPIDAVSM-PVRNVNYSI 186
Score = 94 (38.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 274 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 324
>UNIPROTKB|Q2LIP7 [details] [associations]
symbol:rpoA "RNA polymerase subunit" species:4530 "Oryza
sativa" [GO:0009536 "plastid" evidence=IC] HAMAP:MF_00059
InterPro:IPR009025 InterPro:IPR011260 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773
Pfam:PF01000 Pfam:PF01193 Pfam:PF03118 ProDom:PD001179
SMART:SM00662 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 GO:GO:0009295 GO:GO:0003899 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 SUPFAM:SSF47789 TIGRFAMs:TIGR02027
EMBL:DQ289172 Gramene:Q2LIP7 Genevestigator:Q2LIP7 Uniprot:Q2LIP7
Length = 317
Score = 161 (61.7 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 42/124 (33%), Positives = 67/124 (54%)
Query: 205 IDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGALHEYSSLEG 264
+D K L + + I+ P +G T+G ALRR LL G T HEYS++ G
Sbjct: 2 VDSKRL--YYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAG 59
Query: 265 VQEDIIDIILNLKGVILK--LYNRDYAILNLKKFGKCVVLASDIELLSDIELVNPNHIIA 322
++E + +I+LNLK ++L+ LY A + +K G + A DI L +E+V+ IA
Sbjct: 60 IEESVQEILLNLKEIVLRSNLYGVRTASICVK--GPRYITAQDIILPPSVEIVDTAQPIA 117
Query: 323 HLSD 326
+L++
Sbjct: 118 NLTE 121
Score = 94 (38.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 372 VDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEIL 422
+D LEL R+ NCLK NIH + DL+ ++E +L+R + + +I + L
Sbjct: 254 IDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTL 304
>GENEDB_PFALCIPARUM|PFE1125w [details] [associations]
symbol:PFE1125w "50S ribosomal subunit protein
L17, putative" species:5833 "Plasmodium falciparum" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 EMBL:AL844504 HOGENOM:HOG000019780
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 RefSeq:XP_002808710.1 ProteinModelPortal:C0H4F9
EnsemblProtists:PFE1125w:mRNA GeneID:813040 KEGG:pfa:PFE1125w
EuPathDB:PlasmoDB:PF3D7_0522500 ProtClustDB:CLSZ2433957
Uniprot:C0H4F9
Length = 166
Score = 193 (73.0 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 52/133 (39%), Positives = 76/133 (57%)
Query: 418 IKEILASRGKYYMRHRH-GFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRV 476
+K I R + H + FRKL R + R +LR +T SLLRY I TT KAKE RR
Sbjct: 34 LKYISNKRNTSLLAHTNKNFRKLGRDRAQRRALLRALTTSLLRYGKIVTTEAKAKETRRK 93
Query: 477 VEPILTLSKKNTLSNK---RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRI-LKMGFR 532
V+ I+T +KK+ + + RL +Y+ DR++ + + + RY + +GGY +I L R
Sbjct: 94 VDRIITYAKKHDNNRQYAYRLIANYVYDRELALNVVKQAPVRYKERHGGYTKIKLLPKSR 153
Query: 533 VGDNAPMAFIELL 545
GD + MA +ELL
Sbjct: 154 KGDASRMAMLELL 166
>UNIPROTKB|C0H4F9 [details] [associations]
symbol:PFE1125w "Mitochondrial ribosomal protein L17,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 EMBL:AL844504 HOGENOM:HOG000019780
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 RefSeq:XP_002808710.1 ProteinModelPortal:C0H4F9
EnsemblProtists:PFE1125w:mRNA GeneID:813040 KEGG:pfa:PFE1125w
EuPathDB:PlasmoDB:PF3D7_0522500 ProtClustDB:CLSZ2433957
Uniprot:C0H4F9
Length = 166
Score = 193 (73.0 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 52/133 (39%), Positives = 76/133 (57%)
Query: 418 IKEILASRGKYYMRHRH-GFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRV 476
+K I R + H + FRKL R + R +LR +T SLLRY I TT KAKE RR
Sbjct: 34 LKYISNKRNTSLLAHTNKNFRKLGRDRAQRRALLRALTTSLLRYGKIVTTEAKAKETRRK 93
Query: 477 VEPILTLSKKNTLSNK---RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRI-LKMGFR 532
V+ I+T +KK+ + + RL +Y+ DR++ + + + RY + +GGY +I L R
Sbjct: 94 VDRIITYAKKHDNNRQYAYRLIANYVYDRELALNVVKQAPVRYKERHGGYTKIKLLPKSR 153
Query: 533 VGDNAPMAFIELL 545
GD + MA +ELL
Sbjct: 154 KGDASRMAMLELL 166
>SGD|S000003599 [details] [associations]
symbol:MRPL8 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IPI] [GO:0032543
"mitochondrial translation" evidence=IC] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;IPI] [GO:0005622
"intracellular" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000456 Pfam:PF01196
PROSITE:PS01167 SGD:S000003599 EMBL:BK006943 GO:GO:0005762
GO:GO:0003735 GO:GO:0032543 GO:GO:0000002 EMBL:Z49338 EMBL:Z34288
eggNOG:COG0203 Gene3D:3.90.1030.10 PANTHER:PTHR14413
SUPFAM:SSF64263 TIGRFAMs:TIGR00059 OrthoDB:EOG4GMZ6J EMBL:X53841
EMBL:AY558249 PIR:S50809 RefSeq:NP_012472.1
ProteinModelPortal:P22353 SMR:P22353 DIP:DIP-5672N IntAct:P22353
MINT:MINT-497599 STRING:P22353 PaxDb:P22353 PeptideAtlas:P22353
EnsemblFungi:YJL063C GeneID:853382 KEGG:sce:YJL063C
HOGENOM:HOG000141790 OMA:LIRHEYI NextBio:973837
Genevestigator:P22353 GermOnline:YJL063C Uniprot:P22353
Length = 238
Score = 186 (70.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 43/122 (35%), Positives = 73/122 (59%)
Query: 437 RKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAF 496
RKL+R +HR +L+N+ L ++E I +T K KE RV E I+T +K+ ++ +A
Sbjct: 7 RKLSRDKAHRDALLKNLACQLFQHESIVSTHAKCKEASRVAERIITWTKRAITTSNSVAQ 66
Query: 497 SYLR------------DRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIEL 544
+ L+ +RK+ +LFSE+ PRY++ GGY R+L++ R D+AP + +EL
Sbjct: 67 AELKSQIQSQLFLAGDNRKLMKRLFSEIAPRYLERPGGYTRVLRLEPRANDSAPQSVLEL 126
Query: 545 LN 546
++
Sbjct: 127 VD 128
>UNIPROTKB|F1NHT8 [details] [associations]
symbol:MRPL17 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] InterPro:IPR000456 Pfam:PF01196 GO:GO:0005743
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
GeneTree:ENSGT00390000010698 OMA:DEVRFYA EMBL:AADN02060538
IPI:IPI00811306 Ensembl:ENSGALT00000004103 Uniprot:F1NHT8
Length = 167
Score = 152 (58.6 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 41/116 (35%), Positives = 63/116 (54%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG FR+L R RL +LRN+ +L+R+E I+ +A E+R E ++ +K+
Sbjct: 15 HGRVFRRLGRGPRSRLDLLRNLVTALVRHERIEAPWARADEMRGYAERLIDYAKRGDTDE 74
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVG-DNAPMAFIEL 544
+ R+A +L ++ + KLF L PR+ G Y R+L + R D A MA IEL
Sbjct: 75 RAMRMADFWLTEKDLIHKLFKVLAPRFQPHPGSYTRMLHIPNRDSLDRAKMAVIEL 130
>UNIPROTKB|Q9NRX2 [details] [associations]
symbol:MRPL17 "39S ribosomal protein L17, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IPI] InterPro:IPR000456 Pfam:PF01196
PROSITE:PS01167 EMBL:CH471064 GO:GO:0005743 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0203 HOGENOM:HOG000019780
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 OMA:LIMNERI CTD:63875 HOVERGEN:HBG056029
OrthoDB:EOG41C6XH EMBL:AF164797 EMBL:AF141338 EMBL:AK026857
EMBL:CR457177 EMBL:BC012306 EMBL:AB051620 IPI:IPI00172591
RefSeq:NP_071344.1 UniGene:Hs.523456 UniGene:Hs.708782 PDB:2CQM
PDBsum:2CQM ProteinModelPortal:Q9NRX2 SMR:Q9NRX2 STRING:Q9NRX2
PhosphoSite:Q9NRX2 DMDM:74752931 PaxDb:Q9NRX2 PeptideAtlas:Q9NRX2
PRIDE:Q9NRX2 DNASU:63875 Ensembl:ENST00000288937 GeneID:63875
KEGG:hsa:63875 UCSC:uc001men.2 GeneCards:GC11M006659
HGNC:HGNC:14053 HPA:HPA043666 HPA:HPA050552 MIM:611830
neXtProt:NX_Q9NRX2 PharmGKB:PA30946 InParanoid:Q9NRX2
EvolutionaryTrace:Q9NRX2 GenomeRNAi:63875 NextBio:65556
ArrayExpress:Q9NRX2 Bgee:Q9NRX2 CleanEx:HS_MRPL17
Genevestigator:Q9NRX2 GermOnline:ENSG00000158042 Uniprot:Q9NRX2
Length = 175
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/114 (33%), Positives = 60/114 (52%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG FR++ R+ +LRN+ L+R+E I+ + E+R E ++ K +
Sbjct: 11 HGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNE 70
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIE 543
+ R+A +L ++ + KLF L PRY GGY R+L++ R D A MA IE
Sbjct: 71 RAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 124
>UNIPROTKB|Q3T0L3 [details] [associations]
symbol:MRPL17 "39S ribosomal protein L17, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0203 HOGENOM:HOG000019780 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 PDB:2FTC
PDBsum:2FTC EMBL:BC102348 IPI:IPI00708783 RefSeq:NP_001029446.1
UniGene:Bt.49032 ProteinModelPortal:Q3T0L3 SMR:Q3T0L3 STRING:Q3T0L3
PRIDE:Q3T0L3 Ensembl:ENSBTAT00000034505 GeneID:506988
KEGG:bta:506988 CTD:63875 GeneTree:ENSGT00390000010698
HOVERGEN:HBG056029 InParanoid:Q3T0L3 OMA:DEVRFYA OrthoDB:EOG41C6XH
EvolutionaryTrace:Q3T0L3 NextBio:20867842 Uniprot:Q3T0L3
Length = 172
Score = 146 (56.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG +R+L R+ +L+N+ L+R+E I+ + + ELR E ++ K +
Sbjct: 11 HGRVYRRLGLGPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLIDYGKLGDTNE 70
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFR-VGDNAPMAFIE 543
+ R+A +L ++ + KLF L PRY NGGY R+L++ R D A MA IE
Sbjct: 71 RAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIPNRNQQDRAKMAVIE 125
>MGI|MGI:1351608 [details] [associations]
symbol:Mrpl17 "mitochondrial ribosomal protein L17"
species:10090 "Mus musculus" [GO:0000002 "mitochondrial genome
maintenance" evidence=TAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005743
"mitochondrial inner membrane" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISA]
[GO:0019904 "protein domain specific binding" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 MGI:MGI:1351608
GO:GO:0005743 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
GO:GO:0000002 eggNOG:COG0203 HOGENOM:HOG000019780
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 CTD:63875 GeneTree:ENSGT00390000010698
HOVERGEN:HBG056029 OMA:DEVRFYA OrthoDB:EOG41C6XH EMBL:AK007828
EMBL:AK144092 EMBL:AK147957 EMBL:BC010718 IPI:IPI00111784
IPI:IPI00473469 RefSeq:NP_079577.1 UniGene:Mm.44225
ProteinModelPortal:Q9D8P4 SMR:Q9D8P4 STRING:Q9D8P4
PhosphoSite:Q9D8P4 PaxDb:Q9D8P4 PRIDE:Q9D8P4
Ensembl:ENSMUST00000124482 GeneID:27397 KEGG:mmu:27397
UCSC:uc009izl.1 UCSC:uc009izm.1 InParanoid:Q9D8P4 NextBio:305376
Bgee:Q9D8P4 CleanEx:MM_MRPL17 Genevestigator:Q9D8P4
GermOnline:ENSMUSG00000030879 Uniprot:Q9D8P4
Length = 176
Score = 146 (56.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG +R+L R+ +LRN+ L+R+E I+ T +A E+R E ++ K +
Sbjct: 11 HGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEATWARADEMRGYAEKLIDYGKLGDTNE 70
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVG-DNAPMAFIE 543
+ R+A +L ++ + KLF L PR+ NG Y R+L++ R D A MA IE
Sbjct: 71 RAMRMADFWLTEKDLIPKLFKVLAPRFQGQNGNYTRMLQIPNRKEQDRAKMAVIE 125
>UNIPROTKB|F1RMQ4 [details] [associations]
symbol:MRPL17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0005743 "mitochondrial inner membrane" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000456 Pfam:PF01196 GO:GO:0005743
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 CTD:63875
GeneTree:ENSGT00390000010698 OMA:DEVRFYA EMBL:FP565445
RefSeq:NP_001231309.1 UniGene:Ssc.43194 Ensembl:ENSSSCT00000026864
GeneID:100512482 KEGG:ssc:100512482 Uniprot:F1RMQ4
Length = 169
Score = 145 (56.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG FR+L R+ +L+N+ L+R+E I+ + + ELR E ++ K +
Sbjct: 11 HGRVFRRLGLGPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLIDYGKLGDTNE 70
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFR-VGDNAPMAFIE 543
+ R+A +L ++ + KLF L PR+ NGGY R+L++ R D A MA IE
Sbjct: 71 RAMRMADFWLTEKDLIPKLFQVLAPRFQGQNGGYTRMLQIPNRNEQDRAKMAVIE 125
>UNIPROTKB|E2QYN8 [details] [associations]
symbol:MRPL17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000456 Pfam:PF01196
GO:GO:0005743 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 GeneTree:ENSGT00390000010698 OMA:DEVRFYA
EMBL:AAEX03012868 Ensembl:ENSCAFT00000010629 NextBio:20895767
Uniprot:E2QYN8
Length = 208
Score = 150 (57.9 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 40/115 (34%), Positives = 62/115 (53%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG FR+L R+ +LRN+ L+R+E I+ + + E+R E ++ K +
Sbjct: 47 HGRVFRRLGLGPESRIHLLRNLLTGLVRHERIEASWARVDEMRGYAEKLIDYGKLGDTNE 106
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVG-DNAPMAFIE 543
+ R+A +L ++ + KLF L PRY NGGY R+L++ R D A MA IE
Sbjct: 107 QAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIPNRSKQDRAKMAVIE 161
>RGD|70943 [details] [associations]
symbol:Mrpl17 "mitochondrial ribosomal protein L17" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=IEA;ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA;ISO]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 RGD:70943
GO:GO:0005743 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0203 HOGENOM:HOG000019780 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 CTD:63875
GeneTree:ENSGT00390000010698 HOVERGEN:HBG056029 OMA:DEVRFYA
OrthoDB:EOG41C6XH EMBL:BC058447 EMBL:U53512 IPI:IPI00189035
RefSeq:NP_598223.1 UniGene:Rn.40354 ProteinModelPortal:Q6PDW6
SMR:Q6PDW6 STRING:Q6PDW6 PRIDE:Q6PDW6 Ensembl:ENSRNOT00000050562
GeneID:171061 KEGG:rno:171061 UCSC:RGD:70943 InParanoid:Q6PDW6
NextBio:621641 Genevestigator:Q6PDW6 GermOnline:ENSRNOG00000019497
Uniprot:Q6PDW6
Length = 176
Score = 142 (55.0 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 38/115 (33%), Positives = 61/115 (53%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG +R+L R+ +LRN+ L+R+E I+ T + E+R E ++ K +
Sbjct: 11 HGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEATWARVDEMRGYAEKLIDYGKLGDTNE 70
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVG-DNAPMAFIE 543
+ R+A +L ++ + KLF L PR+ NG Y R+L++ R D A MA IE
Sbjct: 71 RAMRMADFWLTEKDLIPKLFKVLAPRFQGQNGNYTRMLQIPNRKEQDRAKMAVIE 125
>GENEDB_PFALCIPARUM|PF14_0289 [details] [associations]
symbol:PF14_0289 "ribosomal protein L17,
putative" species:5833 "Plasmodium falciparum" [GO:0000315
"organellar large ribosomal subunit" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] InterPro:IPR000456 Pfam:PF01196
GO:GO:0005739 GO:GO:0006412 GO:GO:0003735 EMBL:AE014187 HSSP:Q9Z9H5
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263 GO:GO:0000315
RefSeq:XP_001348463.1 ProteinModelPortal:Q8ILF5 IntAct:Q8ILF5
MINT:MINT-1745505 EnsemblProtists:PF14_0289:mRNA GeneID:811871
KEGG:pfa:PF14_0289 EuPathDB:PlasmoDB:PF3D7_1431000
HOGENOM:HOG000281248 OMA:DSAPLAY ProtClustDB:PTZ00076
Uniprot:Q8ILF5
Length = 257
Score = 145 (56.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 37/116 (31%), Positives = 63/116 (54%)
Query: 433 RHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNK 492
R FR+ ++ H+ ++N LL+Y I+TTL KAKEL+ E ++ L+KK+ + N
Sbjct: 16 RRLFRRAHKQPHHKWDSIKNQLNELLKYGRIETTLTKAKELQGYAEELIYLAKKDNVENN 75
Query: 493 RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMG-FRVGDNAPMAFIELLNQ 547
S LR + +L+ P Y + RI+ R+ D+AP+A+IE +++
Sbjct: 76 LKVESMLRTAQGRRRLYEFYVPLYRHRPFFFTRIINQWKLRLRDSAPLAYIEFIDR 131
>UNIPROTKB|Q8ILF5 [details] [associations]
symbol:PF14_0289 "Mitochondrial ribosomal protein L17-2,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000315
"organellar large ribosomal subunit" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] InterPro:IPR000456 Pfam:PF01196
GO:GO:0005739 GO:GO:0006412 GO:GO:0003735 EMBL:AE014187 HSSP:Q9Z9H5
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263 GO:GO:0000315
RefSeq:XP_001348463.1 ProteinModelPortal:Q8ILF5 IntAct:Q8ILF5
MINT:MINT-1745505 EnsemblProtists:PF14_0289:mRNA GeneID:811871
KEGG:pfa:PF14_0289 EuPathDB:PlasmoDB:PF3D7_1431000
HOGENOM:HOG000281248 OMA:DSAPLAY ProtClustDB:PTZ00076
Uniprot:Q8ILF5
Length = 257
Score = 145 (56.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 37/116 (31%), Positives = 63/116 (54%)
Query: 433 RHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNK 492
R FR+ ++ H+ ++N LL+Y I+TTL KAKEL+ E ++ L+KK+ + N
Sbjct: 16 RRLFRRAHKQPHHKWDSIKNQLNELLKYGRIETTLTKAKELQGYAEELIYLAKKDNVENN 75
Query: 493 RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMG-FRVGDNAPMAFIELLNQ 547
S LR + +L+ P Y + RI+ R+ D+AP+A+IE +++
Sbjct: 76 LKVESMLRTAQGRRRLYEFYVPLYRHRPFFFTRIINQWKLRLRDSAPLAYIEFIDR 131
>DICTYBASE|DDB_G0294046 [details] [associations]
symbol:mrps4 "ribosomal protein S4, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0031152 "aggregation
involved in sorocarp development" evidence=IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002942 Pfam:PF01479 PROSITE:PS00632
PROSITE:PS50889 SMART:SM00363 dictyBase:DDB_G0294046 EMBL:AB000109
GenomeReviews:AB000109_GR GO:GO:0019843 GO:GO:0031152 GO:GO:0005763
Gene3D:3.10.290.10 eggNOG:COG0522 InterPro:IPR022801
PANTHER:PTHR11831 PIR:T43785 RefSeq:NP_050106.1
ProteinModelPortal:Q9XPI8 STRING:Q9XPI8 PRIDE:Q9XPI8 GeneID:2193932
KEGG:ddi:DidioMp39 Uniprot:Q9XPI8
Length = 300
Score = 145 (56.1 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 71 KQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKI 130
KQF+ + + KG ++I++ LE R D V+ R GF + EARQ+I+H+ LVN KI
Sbjct: 124 KQFKLLY---KKYKGNE-KVIIQQLEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKI 179
Query: 131 VNIASYKIKPGDIISVREKAKKQ 153
++ Y I GDIIS +E + K+
Sbjct: 180 ASLPGYMINVGDIISFKEGSMKR 202
>ZFIN|ZDB-GENE-040912-133 [details] [associations]
symbol:mrpl17 "mitochondrial ribosomal protein L17"
species:7955 "Danio rerio" [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000456 Pfam:PF01196 ZFIN:ZDB-GENE-040912-133
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0203
HOGENOM:HOG000019780 Gene3D:3.90.1030.10 PANTHER:PTHR14413
SUPFAM:SSF64263 TIGRFAMs:TIGR00059 CTD:63875
GeneTree:ENSGT00390000010698 HOVERGEN:HBG056029 OMA:DEVRFYA
OrthoDB:EOG41C6XH EMBL:FP102797 EMBL:BC081486 IPI:IPI00493770
RefSeq:NP_001004683.1 UniGene:Dr.85603 SMR:Q66I81 STRING:Q66I81
Ensembl:ENSDART00000113534 Ensembl:ENSDART00000149905 GeneID:447945
KEGG:dre:447945 NextBio:20832462 Uniprot:Q66I81
Length = 166
Score = 123 (48.4 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 35/115 (30%), Positives = 58/115 (50%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
HG RK+ R+ +LRN+ L+R+E I+T +A E+R E ++ +KK
Sbjct: 11 HGRVARKMGLGPESRINILRNLLTGLVRHERIETGKARADEVRFYAEKLIDYAKKGDTDE 70
Query: 492 K--RLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVG-DNAPMAFIE 543
K ++A +L ++ + KLF L R+ GY + ++ R D A MA +E
Sbjct: 71 KAMKMADFWLTEKDLIPKLFKVLAVRFENQTAGYTNMARLPNRENLDRAAMAVLE 125
>CGD|CAL0005986 [details] [associations]
symbol:MRPL8 species:5476 "Candida albicans" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0000002
"mitochondrial genome maintenance" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000456 Pfam:PF01196 CGD:CAL0005986 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000160 EMBL:AACQ01000159
eggNOG:COG0203 HOGENOM:HOG000019780 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
RefSeq:XP_712336.1 RefSeq:XP_712372.1 ProteinModelPortal:Q59RQ4
STRING:Q59RQ4 GeneID:3646000 GeneID:3646039 KEGG:cal:CaO19.13548
KEGG:cal:CaO19.6129 Uniprot:Q59RQ4
Length = 255
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 39/120 (32%), Positives = 70/120 (58%)
Query: 443 SSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLS-KKN-----TLSN----- 491
+SH+ ++ +N+ +L+R+E I TT KAK + +E L + K+N ++N
Sbjct: 12 ASHKKMIYKNLCANLIRHEYIVTTSAKAKAAQPYIEKFLANTIKQNKELPEAVTNLEDKL 71
Query: 492 KRL-AFSYLR--DR-KITIKLFSELGPRYIKINGGYVRILKMGFRVGDN-APMAFIELLN 546
K + A SYL+ DR + K+ ++ RY + G+ R++K+ R+GD+ APM+ IEL++
Sbjct: 72 KSIKALSYLQPPDRVECGSKMLEDIINRYPQRTHGFTRVIKLEPRLGDDKAPMSVIELVD 131
>UNIPROTKB|E9PKV2 [details] [associations]
symbol:MRPL17 "39S ribosomal protein L17, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000456
Pfam:PF01196 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AC091564 Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
HGNC:HGNC:14053 IPI:IPI00982310 ProteinModelPortal:E9PKV2
SMR:E9PKV2 Ensembl:ENST00000532203 ArrayExpress:E9PKV2 Bgee:E9PKV2
Uniprot:E9PKV2
Length = 142
Score = 83 (34.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 500 RDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIE 543
+++ + KLF L PRY GGY R+L++ R D A MA IE
Sbjct: 58 KEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 101
Score = 63 (27.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 434 HG--FRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVE 478
HG FR++ R+ +LRN+ L+R+E I+ + E+R E
Sbjct: 11 HGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAE 57
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 550 550 0.00097 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 88
No. of states in DFA: 599 (64 KB)
Total size of DFA: 255 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 48.05u 0.10s 48.15t Elapsed: 00:00:30
Total cpu time: 48.06u 0.10s 48.16t Elapsed: 00:00:32
Start: Thu Aug 15 11:31:10 2013 End: Thu Aug 15 11:31:42 2013