RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8861
(550 letters)
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli
[TaxId: 562]}
Length = 204
Score = 213 bits (543), Expect = 9e-67
Identities = 121/198 (61%), Positives = 155/198 (78%), Gaps = 1/198 (0%)
Query: 3 RYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQFREKQKV 62
RY+GPK KL RREG DLFLKS R++D+KCK++ PGQHG R SDYG Q REKQKV
Sbjct: 1 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQKV 59
Query: 63 KRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLISHR 122
+R+YG+LE+QFR Y+ E ARLKG TGE +L LLE R DNVVYRMGF +TR+EARQL+SH+
Sbjct: 60 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 119
Query: 123 AFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGV 182
A +VN ++VNIASY++ P D++S+REKAKKQ+R+ +LEL+E +W+ VDA KMEG
Sbjct: 120 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGT 179
Query: 183 FKSEPNRSEFANDINDLL 200
FK +P RS+ + DIN+ L
Sbjct: 180 FKRKPERSDLSADINEHL 197
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus
thermophilus [TaxId: 274]}
Length = 208
Score = 194 bits (494), Expect = 1e-59
Identities = 91/201 (45%), Positives = 130/201 (64%), Gaps = 4/201 (1%)
Query: 3 RYIGPKAKLCRREGIDLFLKSARRSLDSKCKLDLR---PGQHGRISGSRTSDYGYQFREK 59
RYIGP +LCRREG+ L+LK R KC ++ R PGQHG+ R SDY + REK
Sbjct: 2 RYIGPVCRLCRREGVKLYLKG-ERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREK 60
Query: 60 QKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMGFSSTRSEARQLI 119
QK++R+YGI E+QFR F E ++ KG TG + L LLESR DNVVYR+GF+ +R +ARQL+
Sbjct: 61 QKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV 120
Query: 120 SHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKM 179
H VN + V++ SY+++PGD I+V EK++ I +LE + W+++D + M
Sbjct: 121 RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGM 180
Query: 180 EGVFKSEPNRSEFANDINDLL 200
+G F P+R + A +N+ L
Sbjct: 181 KGKFLRLPDREDLALPVNEQL 201
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 159
Score = 161 bits (410), Expect = 6e-48
Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 2/153 (1%)
Query: 48 RTSDYGYQFREKQKVKRMYGILEKQFRRYFIEGARLKGKTGEIILKLLESRFDNVVYRMG 107
+ S+YG Q +EKQK++ MYG+ E+QFR+ F E ++ GK GE + LLESR DN+VYR+G
Sbjct: 2 KLSEYGLQLQEKQKLRHMYGVNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLG 61
Query: 108 FSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRIANSLELSEHST 167
+ TR +ARQL++H LV+ VNI SY++KPG I+VREK++ I +LE + +
Sbjct: 62 LARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALEANNYI- 120
Query: 168 PFSWITVDAKKMEGVFKSEPNRSEFANDINDLL 200
+++ D +KMEG + P RSE +IN+ L
Sbjct: 121 -PDYLSFDPEKMEGTYTRLPERSELPAEINEAL 152
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 156 bits (397), Expect = 1e-46
Identities = 77/118 (65%), Positives = 96/118 (81%)
Query: 430 MRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTL 489
MRHR R+LNR SSHR M RNM SL+R+EIIKTTLPKAKELRRVVEP++TL+K +++
Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60
Query: 490 SNKRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIELLNQ 547
+N+RLAF+ RD +I KLF+ELGPR+ GGY RILK GFR GDNAPMA+IEL+++
Sbjct: 61 ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDR 118
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
{Deinococcus radiodurans [TaxId: 1299]}
Length = 113
Score = 142 bits (360), Expect = 2e-41
Identities = 50/113 (44%), Positives = 68/113 (60%)
Query: 432 HRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSN 491
H RKLNR SS R+ + R +LLR I+TTL KAKELR VE ++T +K L +
Sbjct: 1 HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHS 60
Query: 492 KRLAFSYLRDRKITIKLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIEL 544
+RL + D+ + K+ E+ P+Y + GGY RIL++G R GD MA IEL
Sbjct: 61 RRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL 113
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
thermophilus [TaxId: 274]}
Length = 105
Score = 121 bits (306), Expect = 7e-34
Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 443 SSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNKRLAFSYLRDR 502
SSHRL + RN SLL + I TT+PKAKELR V+ ++ L+K+ L +RL L+D
Sbjct: 1 SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDV 60
Query: 503 KITIKLFSELGPRYIKINGGYVRILKMG-FRVGDNAPMAFIEL 544
K+ KLF E+ PRY GGY R+LK+ R GD AP+A +EL
Sbjct: 61 KLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVEL 103
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 114 bits (286), Expect = 5e-31
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 449 MLRNMTISLLRYEIIKTTLPKAKELRRVVEPILTLSKKNTLSNK--RLAFSYLRDRKITI 506
+LRN+ L+R+E I+ + E+R E ++ K + + R+A +L ++ +
Sbjct: 1 LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIP 60
Query: 507 KLFSELGPRYIKINGGYVRILKMGFRVGDNAPMAFIEL 544
KLF L PRY GGY R+L++ R D A MA IE
Sbjct: 61 KLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEY 98
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha
subunit {Escherichia coli [TaxId: 562]}
Length = 72
Score = 99.7 bits (249), Expect = 3e-26
Identities = 52/62 (83%), Positives = 58/62 (93%)
Query: 365 DPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424
DPILLRPVDDLELTVRSANCLKAE IH IGDL+QR+E ELL+TPNLG+KSL EIK++LAS
Sbjct: 1 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 60
Query: 425 RG 426
RG
Sbjct: 61 RG 62
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase
alpha subunit {Bacillus subtilis [TaxId: 1423]}
Length = 67
Score = 96.6 bits (241), Expect = 3e-25
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 365 DPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424
+ +L +++L+L+VRS NCLK I+ + +L ++E ++++ NLGRKSL E+K L
Sbjct: 2 EKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 61
Query: 425 RG 426
G
Sbjct: 62 LG 63
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha
subunit {Thermus thermophilus [TaxId: 274]}
Length = 69
Score = 92.4 bits (230), Expect = 1e-23
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 365 DPILLRPVDDLELTVRSANCLKAENIHCIGDLIQRSENELLRTPNLGRKSLNEIKEILAS 424
+ L P+++L L+ R + LK E I + L+ + +L P +G +SL EIKE L
Sbjct: 3 EEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEK 62
Query: 425 RG 426
+G
Sbjct: 63 KG 64
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 126
Score = 90.5 bits (224), Expect = 3e-22
Identities = 47/94 (50%), Positives = 63/94 (67%)
Query: 244 GCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLA 303
GCA TEV I G LHEYS+ EGVQEDI++I+LNLKG+ +++ +D IL L K G V A
Sbjct: 1 GCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTA 60
Query: 304 SDIELLSDIELVNPNHIIAHLSDNEEAIRQSARV 337
+DI D+E+V P H+I HL+D +I +V
Sbjct: 61 ADITHDGDVEIVKPQHVICHLTDENASISMRIKV 94
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 83.7 bits (207), Expect = 3e-20
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 49/152 (32%)
Query: 194 NDINDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIIS 253
+ + LKPR++D++ + S HAKV +EP ERG+G+TLGNALR +LLSSM +
Sbjct: 2 GSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPPVERIAYNVE 61
Query: 254 GALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIE 313
A E + + D ++ ++ G
Sbjct: 62 AARVEQRT-----------------------DLDKLVIEMETNGT--------------- 83
Query: 314 LVNPNHIIAHLSDNEEAIRQSARVLVDQLNVF 345
++P EEAIR++A +L +QL F
Sbjct: 84 -IDP----------EEAIRRAATILAEQLEAF 104
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus
thermophilus [TaxId: 274]}
Length = 123
Score = 81.6 bits (201), Expect = 3e-19
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 244 GCAPTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAI--LNLKKFGKCVV 301
G A T V I LHE+S++ GV+ED+++IILNLK ++++ N L LK G V
Sbjct: 1 GTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEV 60
Query: 302 LASDIELLSDIELVNPNHIIAHLSDN 327
A D ++D+E++NP+ IA L +
Sbjct: 61 KARDFLPVADVEIMNPDLHIATLEEG 86
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus
thermophilus [TaxId: 274]}
Length = 106
Score = 76.9 bits (189), Expect = 7e-18
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 49/154 (31%)
Query: 196 INDLLKPRIIDVKTLGSNHAKVIMEPFERGYGYTLGNALRRVLLSSMIGCAPTEVIISGA 255
++ LK + V+T G + + ++EP ERG+G TLGN LRR+LLSS+ +
Sbjct: 2 LDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPPVRRVAFQVEDT 61
Query: 256 LHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVLASDIELLSDIELV 315
+ + D L + G V
Sbjct: 62 RLGQRT-----------------------DLDKLTLRIWTDG----------------SV 82
Query: 316 NPNHIIAHLSDNEEAIRQSARVLVDQLNVFAALE 349
P EA+ Q+ +L + L F+ +
Sbjct: 83 TP----------LEALNQAVEILREHLTYFSNPQ 106
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli
[TaxId: 562]}
Length = 104
Score = 58.4 bits (141), Expect = 2e-11
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 95 LESRFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQT 154
+E R D ++ F TR+ AR++I N + S ++ +++R+ ++T
Sbjct: 3 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKP-SKIVELNATLTLRQGNDERT 61
Query: 155 RIANSL 160
I ++
Sbjct: 62 VIVKAI 67
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 58
Score = 56.6 bits (137), Expect = 3e-11
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 98 RFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149
R D + + RS+A + I A +N +IV S +I D I ++
Sbjct: 3 RLDKFIAENVGLT-RSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE 53
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 59
Score = 49.4 bits (118), Expect = 1e-08
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 98 RFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149
R D + + S R+ A + I V+ +IV A++K+ P ++
Sbjct: 2 RLDKFIAQQLGVS-RAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN 52
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 44.1 bits (104), Expect = 1e-06
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 98 RFDNVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREK 149
+++ G+S + ++A+ I+ V+ + KI G +S
Sbjct: 22 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 81
Score = 32.8 bits (75), Expect = 0.012
Identities = 8/56 (14%), Positives = 25/56 (44%)
Query: 101 NVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDIISVREKAKKQTRI 156
+ G + + +EAR+LI +R ++ +++ ++ ++ + R+
Sbjct: 22 RLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKDRFVRV 77
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 31.3 bits (71), Expect = 0.073
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 101 NVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIKPGDII 144
++ G S ++ +AR+ I + A VN + + + +
Sbjct: 36 ELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 79
>d1rw0a_ d.194.1.2 (A:) Hypothetical protein yfiH {Salmonella typhi
[TaxId: 90370]}
Length = 243
Score = 31.0 bits (69), Expect = 0.31
Identities = 27/201 (13%), Positives = 51/201 (25%), Gaps = 27/201 (13%)
Query: 323 HLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLELTVRSA 382
H DN E + ++ + L N+ + + +P D +
Sbjct: 39 HCGDNPEHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYA-SKRADASYSNTPG 97
Query: 383 NCLKAENIHCIGDLIQRSENELLRTPNLGRKSLN-------------EIKEILASRG--- 426
C+ L E + + G + L + + I+A G
Sbjct: 98 TVCAVMTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAI 157
Query: 427 ----KYYMRHRHGFRKLNRTSSHRLIMLRNMTISLLRYEIIKTTLPKAKELRRVVEPILT 482
+ + Y++ + L VE +
Sbjct: 158 GPAAFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTG-----VEHV-Y 211
Query: 483 LSKKNTLSNKRLAFSYLRDRK 503
+ T S FSY RD+
Sbjct: 212 GGDRCTFSESETFFSYRRDKT 232
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 30.1 bits (66), Expect = 0.70
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 318 NHIIAHLSDNEEAIRQSARVLVDQLNVFAALENTPVKKELDSSLEKVDPILLRPVDDLEL 377
I H+ + + R +A + F + P +L + + P L+ + D +
Sbjct: 368 PFIKEHIKNPDWRYRDAA------VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 378 TVRSANC 384
VR
Sbjct: 422 VVRDTAA 428
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 26.7 bits (58), Expect = 2.4
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 138 IKPGDIISVREKAKKQTRIANSLELSEHSTPFSWITVDAKKMEGVF 183
+ GDI++V + + ++ E + + G F
Sbjct: 22 LHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 67
>d2ptda_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Bacillus cereus [TaxId: 1396]}
Length = 296
Score = 27.5 bits (60), Expect = 4.7
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 247 PTEVIISGALHEYSSLEGVQEDIIDIILNLKGVILKLYNRDYAILNLKKFGKCVVL 302
P+E II EY ++G ++ V + I GK V+L
Sbjct: 106 PSETIIMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLL 161
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
[TaxId: 1423]}
Length = 309
Score = 26.6 bits (58), Expect = 7.1
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 492 KRLAFSYLRDRKITIKLFSELGPRYIKINGG 522
+R R RK ++ +L RY I G
Sbjct: 22 ERYYTHIRRGRKPEPEMLQDLKDRYEAIGGI 52
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Length = 283
Score = 26.7 bits (59), Expect = 7.6
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 4 YIGPKAKLCRREGIDLFLK-------SARRSLDSKCKLDLRPGQHGRISGSRTSDYGYQF 56
+ K + R G + L SA R L + ++ L S SR YG
Sbjct: 100 SLMEKHDVAVRNGANALLINALPVGLSAVRMLSNYTQVPLIGHFPFIASFSRMEKYGIHS 159
Query: 57 REKQKVKRMYGI 68
+ K++R+ G+
Sbjct: 160 KVMTKLQRLAGL 171
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.4 bits (55), Expect = 8.4
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 83 LKGKTGEIILKLLESRFD---NVVYRMGFSSTRSEARQLISHRAFLVNKKIVNIASYKIK 139
L+ +T +I + E+ + G + ++LI L + + YKI
Sbjct: 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA--LKEYKID 65
Query: 140 PGDIISVREKAKKQTRIANSLELSEHS 166
+ + V K L H
Sbjct: 66 EKNFVVVMVTKPKAVSTPAPATLEHHH 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.385
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,018,283
Number of extensions: 98801
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 42
Length of query: 550
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 460
Effective length of database: 1,171,896
Effective search space: 539072160
Effective search space used: 539072160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)