Query psy8862
Match_columns 265
No_of_seqs 118 out of 1410
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:16:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09204 secY preprotein trans 100.0 1.3E-61 2.7E-66 464.4 23.7 254 4-257 3-264 (426)
2 COG0201 SecY Preprotein transl 100.0 4.9E-61 1.1E-65 458.1 22.1 248 4-257 8-263 (436)
3 PRK12907 secY preprotein trans 100.0 3.1E-60 6.7E-65 454.7 23.5 249 6-257 5-266 (434)
4 CHL00161 secY preprotein trans 100.0 9.3E-58 2E-62 436.8 23.0 244 7-257 2-250 (417)
5 TIGR00967 3a0501s007 preprotei 100.0 9.5E-55 2.1E-59 415.3 23.0 235 16-257 1-247 (410)
6 PRK12417 secY preprotein trans 100.0 1.2E-53 2.6E-58 406.4 21.4 226 7-257 4-234 (404)
7 PRK08568 preprotein translocas 100.0 3.1E-52 6.7E-57 402.8 21.5 235 3-257 10-274 (462)
8 TIGR02920 acc_sec_Y2 accessory 100.0 1.1E-48 2.3E-53 371.9 21.7 222 14-257 1-227 (395)
9 PTZ00219 Sec61 alpha subunit; 100.0 4.8E-48 1E-52 374.3 20.0 224 3-240 14-275 (474)
10 PF00344 SecY: SecY translocas 100.0 1.6E-41 3.5E-46 318.0 17.7 185 68-257 1-193 (346)
11 KOG1373|consensus 100.0 2.1E-33 4.5E-38 258.9 16.4 227 4-245 14-278 (476)
12 PRK12442 translation initiatio 91.9 0.14 3.1E-06 39.0 2.6 34 232-265 39-72 (87)
13 PF10559 Plug_translocon: Plug 87.9 0.13 2.9E-06 32.6 -0.3 29 26-62 4-32 (35)
14 TIGR00008 infA translation ini 82.7 0.63 1.4E-05 33.9 1.1 26 238-263 43-68 (68)
15 PF04923 Ninjurin: Ninjurin ; 58.6 27 0.00058 27.5 5.2 60 56-118 29-89 (104)
16 CHL00161 secY preprotein trans 55.9 1.8E+02 0.0038 28.3 11.5 25 171-196 383-407 (417)
17 COG0361 InfA Translation initi 51.0 12 0.00025 27.8 1.9 27 238-264 45-71 (75)
18 COG3125 CyoD Heme/copper-type 35.0 1.8E+02 0.0038 23.3 6.4 57 113-169 49-109 (111)
19 PRK10582 cytochrome o ubiquino 30.7 2.7E+02 0.0059 22.0 7.0 50 113-162 47-100 (109)
20 cd05793 S1_IF1A S1_IF1A: Trans 30.2 31 0.00068 25.5 1.4 24 241-264 40-63 (77)
21 COG5415 Predicted integral mem 29.6 3.8E+02 0.0082 24.0 8.2 63 104-166 34-96 (251)
22 TIGR02847 CyoD cytochrome o ub 24.5 3.3E+02 0.0072 21.0 7.1 50 113-162 36-89 (96)
23 PRK12907 secY preprotein trans 21.1 7.9E+02 0.017 24.1 12.5 26 170-196 396-421 (434)
24 PF14293 YWFCY: YWFCY protein 21.0 2.5E+02 0.0054 20.0 4.5 32 99-130 3-34 (61)
25 PF11190 DUF2976: Protein of u 20.4 2.7E+02 0.0059 21.2 4.9 36 190-225 44-79 (87)
No 1
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.3e-61 Score=464.36 Aligned_cols=254 Identities=40% Similarity=0.668 Sum_probs=218.1
Q ss_pred ccCCCCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHh
Q psy8862 4 NNILPNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYIS 79 (265)
Q Consensus 4 ~~~~~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyIt 79 (265)
+++.+.+++||+|+|++||+++ |+|+|||+||+|.++.++.++++++++++++++++||+++++|+|+|||+||||
T Consensus 3 ~~~~~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyIt 82 (426)
T PRK09204 3 KTLKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYIT 82 (426)
T ss_pred hhHHhHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHH
Confidence 3445677899999999999988 999999999999988766544322479999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cccCc-hhHHHHHHHHHHHH
Q psy8862 80 SSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN---LVLDT-SFYFHFTTVLTLVS 155 (265)
Q Consensus 80 AsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~---~~~~~-~~~~~~~~vl~L~a 155 (265)
|||+||+++.++|+++|+|||||+||+|+|++||++|+++|++||++++..+....+ ...++ +..+.+.++++|++
T Consensus 83 AsIi~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~ 162 (426)
T PRK09204 83 ASIIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTA 162 (426)
T ss_pred HHHHHHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHH
Confidence 999999999889999999999999999999999999999999999999876653211 11111 34467889999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeeeEEEEE
Q psy8862 156 GTIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRM 235 (265)
Q Consensus 156 G~~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi 235 (265)
|+++++||||+|||||+|||+|++|++||++++|+++.+.++...++..+....++.+++++++++++||+|++|||||+
T Consensus 163 Gs~i~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~rIPi 242 (426)
T PRK09204 163 GTMFLMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPV 242 (426)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHheeeeeEEEEEE
Confidence 99999999999999999999999999999999999998877543333333344555677788889999999999999999
Q ss_pred eeeeecCCCccccCCCccccCC
Q psy8862 236 NYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 236 ~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
||+|+..|||+++++++|+|-|
T Consensus 243 ~~~~~~~~~~~~~~~~~yiPiK 264 (426)
T PRK09204 243 QYAKRQVGRKMYGGQSSYLPLK 264 (426)
T ss_pred EehhhhccccccCCCCeeeeee
Confidence 9999889999999999999865
No 2
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.9e-61 Score=458.10 Aligned_cols=248 Identities=37% Similarity=0.594 Sum_probs=215.9
Q ss_pred ccCCCCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHh
Q psy8862 4 NNILPNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYIS 79 (265)
Q Consensus 4 ~~~~~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyIt 79 (265)
+...|.++.||+|||++||+++ |+|++||+||+|.++..+.++. +....++|+++||+++++|+|+|||+||||
T Consensus 8 ~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~--~~~~~~~n~~~GGal~~~SIfaLGI~PyIT 85 (436)
T COG0201 8 EVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNS--QRFLILFNMFSGGALSRGSIFALGIMPYIT 85 (436)
T ss_pred HHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHH--hhhhHHHHHhcccccccchHHHHccHHHHH
Confidence 3456788999999999999988 8999999999999988776543 334448999999999999999999999999
Q ss_pred HHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccccCchhHHHHHHHHHHHHHH
Q psy8862 80 SSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQ--KNLVLDTSFYFHFTTVLTLVSGT 157 (265)
Q Consensus 80 AsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~--~~~~~~~~~~~~~~~vl~L~aG~ 157 (265)
||||||||+...|.++|++||+|+||+|+|++|||+|+++|++||.+++..+.+. .+...+++..+.++++++|++||
T Consensus 86 ASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~Gt 165 (436)
T COG0201 86 ASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGT 165 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHH
Confidence 9999999988889999999999999999999999999999999999999888642 11222334568899999999999
Q ss_pred HHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhch--hhhhhhHHHHHHHHHHHhhhheeeeeeEEEEE
Q psy8862 158 IFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDL--VNIIENLPNATFKVKLENDHVILGHISGKMRM 235 (265)
Q Consensus 158 ~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~--~~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi 235 (265)
+++|||||+|||||+|||+||+|++||++++|+.+++.......+. .+....++.++.++++++++||+|++|||||+
T Consensus 166 ~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ii~~vvyve~~~r~IPI 245 (436)
T COG0201 166 MFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPI 245 (436)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhheEEEeeh
Confidence 9999999999999999999999999999999999998776655453 33344567778888889999999999999999
Q ss_pred eeeeecCCCccccCCCccccCC
Q psy8862 236 NYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 236 ~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
||+||. .+.|+++|+|-|
T Consensus 246 ~y~~~~----~~~g~~s~lPlK 263 (436)
T COG0201 246 QYAKRQ----SYRGQSSYLPLK 263 (436)
T ss_pred hhhhhh----hcCCcCceeeeE
Confidence 999876 678899999865
No 3
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=3.1e-60 Score=454.68 Aligned_cols=249 Identities=31% Similarity=0.530 Sum_probs=204.3
Q ss_pred CCCCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHhHH
Q psy8862 6 ILPNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSS 81 (265)
Q Consensus 6 ~~~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAs 81 (265)
+.+.+++||+|||++||+++ |+|+|||+||+|.++++. .+ .+++++++|+|+||+++++|+|+|||+||||||
T Consensus 5 ~~~~~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~-~~--~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAs 81 (434)
T PRK12907 5 ISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV-QD--QANVLGMLNVFGGGALQHFSIFAVGITPYITAS 81 (434)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh-hh--hhhHHHHHHHHhccccccChHHHHccHHHHHHH
Confidence 33455679999999999998 999999999999987652 11 145899999999999999999999999999999
Q ss_pred HHHHHHhc-cchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc-ccCchhHHHHHHHHHHHHHHH
Q psy8862 82 IIMQLLSS-IMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQK-NL-VLDTSFYFHFTTVLTLVSGTI 158 (265)
Q Consensus 82 Ii~Qll~~-~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~-~~-~~~~~~~~~~~~vl~L~aG~~ 158 (265)
|+||+++. .+|++++++||||+||||+++||||+|+++|++||++++..+.... +. ..+.++.+.+.++++|+||++
T Consensus 82 II~QLL~~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~ 161 (434)
T PRK12907 82 IIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTA 161 (434)
T ss_pred HHHHHHHhccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHH
Confidence 99999954 8999999999999999999999999999999999999887654211 11 112233356778899999999
Q ss_pred HHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhH--Hhhhch---hhhhhhHHHHHHHHHHHhhhheeeeeeEEE
Q psy8862 159 FLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLK--LVKIDL---VNIIENLPNATFKVKLENDHVILGHISGKM 233 (265)
Q Consensus 159 ~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~--~~~~g~---~~~~~~l~~~~~~l~~i~~~V~l~~a~rrI 233 (265)
++|||||+|||||+|||+|++|++||++++|+++.+.+. ....|+ ......++.+++++++++++|++|++||||
T Consensus 162 ~l~WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~v~~~~rrI 241 (434)
T PRK12907 162 FLLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKI 241 (434)
T ss_pred HHHHHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHHHHHHHHHhheeeeeEEE
Confidence 999999999999999999999999999999988766432 112232 111222344455567778899999999999
Q ss_pred EEeeeeecCCCccccC-CCccccCC
Q psy8862 234 RMNYIRILPGDKVTVE-LTPYDLSR 257 (265)
Q Consensus 234 Pi~~~r~~~g~~~~~~-~~~y~~~~ 257 (265)
|+||+||..|++.+++ +++|+|-|
T Consensus 242 Pi~ya~r~~~~~~~~~~~~syiPlK 266 (434)
T PRK12907 242 PIQYAKAVSGNNQYQGAKNTHLPLK 266 (434)
T ss_pred EEEEchhhccccccCCCcCceeeee
Confidence 9999999999888777 78899965
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=9.3e-58 Score=436.76 Aligned_cols=244 Identities=37% Similarity=0.574 Sum_probs=208.3
Q ss_pred CCCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHhHHH
Q psy8862 7 LPNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSSI 82 (265)
Q Consensus 7 ~~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsI 82 (265)
++++|+||+|+|++||+++ |+|+|||+||+|.++..+..++ +++++++++++||+++++|+|+|||+|||||||
T Consensus 2 ~~~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~--~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsI 79 (417)
T CHL00161 2 LQSKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSN--NPLLNLLNTFSGGGFFVIGLFALGILPYINASI 79 (417)
T ss_pred CccccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhcc--ccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHH
Confidence 3578999999999999988 9999999999999886554332 679999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhhhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHHHHHHH
Q psy8862 83 IMQLLSSIMPKFENLKKE-GELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLVSGTIFLM 161 (265)
Q Consensus 83 i~Qll~~~~p~l~~l~~~-g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG~~~~~ 161 (265)
+||+++.++|++++++|| ||+||||+|+|||++|+++|++||++++.++.. + ..+++..+.++++++|++|+++++
T Consensus 80 I~QLl~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~~~--~-~~~~~~~~~~~~v~~L~~Gt~~~~ 156 (417)
T CHL00161 80 IIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWLKP--Y-LFNWNLLLALEIVLALTSGSMIVL 156 (417)
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h-ccCcchHHHHHHHHHHHHHHHHHH
Confidence 999999889999999997 999999999999999999999999999877543 1 122233467889999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeec
Q psy8862 162 WLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRMNYIRIL 241 (265)
Q Consensus 162 wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~ 241 (265)
||||+|||||+|||+|++|++||++++|+.+.+.+...+ ++......+..+++++++++++|++|++|||||+||+||.
T Consensus 157 wL~e~it~~GiGnGiSliI~~~I~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~~~~ 235 (417)
T CHL00161 157 WLSELITEKGLGNGSSLLIFFNIVSNLPKLLQSLLFSLS-ANITILSILLLLFLFFITLIGIIFLQEAIRKIPLISAKQL 235 (417)
T ss_pred HHHHHHHhcCcCcchHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHhhcceEEEEEEEhhhh
Confidence 999999999999999999999999999998876654322 2222333445556777888999999999999999999764
Q ss_pred CCCccccCCCccccCC
Q psy8862 242 PGDKVTVELTPYDLSR 257 (265)
Q Consensus 242 ~g~~~~~~~~~y~~~~ 257 (265)
+++..+++++|+|-|
T Consensus 236 -~~~~~~~~~~ylPiK 250 (417)
T CHL00161 236 -GKSSRLASNSYLPLR 250 (417)
T ss_pred -ccccccCccceeeee
Confidence 466778889999865
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=9.5e-55 Score=415.34 Aligned_cols=235 Identities=34% Similarity=0.566 Sum_probs=200.4
Q ss_pred HHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHhHHHHHHHHhc-c
Q psy8862 16 KKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSSIIMQLLSS-I 90 (265)
Q Consensus 16 ~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~Qll~~-~ 90 (265)
|+|++||+++ |+|++||+||+|.++..+..++ +++++++++++||+++++|+|+|||+|||||||+||+++. .
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~--~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~ 78 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQ--NGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDV 78 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhcc--ccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhcc
Confidence 6899999988 9999999999999877554432 6789999999999999999999999999999999999964 6
Q ss_pred chhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8862 91 MPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGIS-LILKSQKNLVLDTSFYFHFTTVLTLVSGTIFLMWLSEQITE 169 (265)
Q Consensus 91 ~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~-~~~~~~~~~~~~~~~~~~~~~vl~L~aG~~~~~wL~e~it~ 169 (265)
.|.+++++||||+||+|++++||++|+++|++||.+++ ..+.. ...+++..+.+.++++|++|+++++||||+|||
T Consensus 79 ~~~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~---~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~ 155 (410)
T TIGR00967 79 PPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYG---YVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK 155 (410)
T ss_pred ChHHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999988 44322 122334456788999999999999999999999
Q ss_pred hcCCcchHHHHHHHHhhhhHHHHHHHhHHhh--hchh-h---hhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeecCC
Q psy8862 170 YGLGNGTSIIICSGIISSFPNILINLLKLVK--IDLV-N---IIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPG 243 (265)
Q Consensus 170 ~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~--~g~~-~---~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g 243 (265)
||+|||+|++|++||++++|+++.+.++..+ .++. + ..+++..+++++++++++||+|++|||||+||+|+..+
T Consensus 156 ~GiGnG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~~ 235 (410)
T TIGR00967 156 YGIGNGISLLIFAGIIATIPSGLLQPTEVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGG 235 (410)
T ss_pred cCcccCcHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHheeeeeEEEEEEEEhhhhcC
Confidence 9999999999999999999999988765311 2221 1 24456677778888999999999999999999987767
Q ss_pred CccccCCCccccCC
Q psy8862 244 DKVTVELTPYDLSR 257 (265)
Q Consensus 244 ~~~~~~~~~y~~~~ 257 (265)
++ .++++|+|-|
T Consensus 236 ~~--~~~~~~iPiK 247 (410)
T TIGR00967 236 RR--GSQSTYLPLK 247 (410)
T ss_pred CC--CCccceeeeE
Confidence 66 6788999865
No 6
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.2e-53 Score=406.40 Aligned_cols=226 Identities=27% Similarity=0.342 Sum_probs=191.3
Q ss_pred CCCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHhHHH
Q psy8862 7 LPNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSSI 82 (265)
Q Consensus 7 ~~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsI 82 (265)
++.+++||+|+|++||+++ |+|+|||+||+|.++.++ .++++++++|+++||+++++|+|+|||+|||||||
T Consensus 4 ~~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~----~~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsI 79 (404)
T PRK12417 4 LKKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLG----GHESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMI 79 (404)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcC----ccchHHHHHHHhcccccccCcHHHHccHHHHHHHH
Confidence 3478999999999999988 999999999999988742 12569999999999999999999999999999999
Q ss_pred HHHHHhcc-chhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHHHHHHH
Q psy8862 83 IMQLLSSI-MPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLVSGTIFLM 161 (265)
Q Consensus 83 i~Qll~~~-~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG~~~~~ 161 (265)
+||+++.. +|++++++|| |+||+| ||+|+++|++||++++.++.+.++. . + .+.+.++++|+||++++|
T Consensus 80 I~QLL~~~~~~~l~~~~ke-e~gr~~-----r~ltl~la~iQs~~~~~~~~~~~~~--~-~-~~~~~~~l~L~aGt~~~~ 149 (404)
T PRK12417 80 ILQLFSYRKRDGLMKQTIE-EQHYRE-----RILTLIIAVIQSLAVILSLPSKERI--S-Q-TNILLNTLILVTGTMFLV 149 (404)
T ss_pred HHHHHHhCCCcchhhcChH-HHHHHH-----HHHHHHHHHHHHHHHHHHhcccccc--h-h-hHHHHHHHHHHHHHHHHH
Confidence 99999987 7999999988 888875 9999999999999999887642221 1 1 367889999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeec
Q psy8862 162 WLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRMNYIRIL 241 (265)
Q Consensus 162 wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~ 241 (265)
||||+||+||+| |+|++|++||++++|+++.+.+.... ......+.+.+++++.+|++|++|||||+||++|.
T Consensus 150 WL~E~it~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~~------~~~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~~ 222 (404)
T PRK12417 150 WLSDLNARYGIG-GPMPIVLVSMIKSIPQDVIEYIDASH------IVIILLILLVIITLFFLYFIELVEYRIPYNDIMNH 222 (404)
T ss_pred HHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhheEEEEEEEEhhhh
Confidence 999999999999 99999999999999999887654311 11223334445556679999999999999999887
Q ss_pred CCCccccCCCccccCC
Q psy8862 242 PGDKVTVELTPYDLSR 257 (265)
Q Consensus 242 ~g~~~~~~~~~y~~~~ 257 (265)
.+++ +++|+|-|
T Consensus 223 ~~~~----~~sylPiK 234 (404)
T PRK12417 223 NRFK----MYSYLSIK 234 (404)
T ss_pred ccCC----CCcceeee
Confidence 7765 78999865
No 7
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=3.1e-52 Score=402.80 Aligned_cols=235 Identities=19% Similarity=0.251 Sum_probs=191.2
Q ss_pred CccCCCCcCchh----hHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCc
Q psy8862 3 LNNILPNKDAKH----YKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGI 74 (265)
Q Consensus 3 ~~~~~~~~~~~~----l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI 74 (265)
+.+++|++++|+ +|+|++||+++ |+|++||+||+|.++ +++++++++++||+ ++|+|+|||
T Consensus 10 ~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~---------~~~l~~l~~~~gg~--~~slf~LGI 78 (462)
T PRK08568 10 ILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS---------QDLFELLRIIFAGS--FGTLLQLGI 78 (462)
T ss_pred HHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc---------ccHHHHHHHHhCCc--ccchHHhCc
Confidence 456788887765 99999999988 999999999999864 25889999999995 899999999
Q ss_pred hHHHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHH
Q psy8862 75 MPYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLV 154 (265)
Q Consensus 75 ~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 154 (265)
+|||||||+||+++.. ++.++++++|+||+|+|++||++|+++|++||++++.++.+.+......+..+.+.++++|+
T Consensus 79 ~PyItAsII~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~ 156 (462)
T PRK08568 79 GPIVTAGIILQLLVGS--KLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLF 156 (462)
T ss_pred HHHHHHHHHHHHHhhC--chheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHH
Confidence 9999999999999752 34466666799999999999999999999999999987653211000123456788999999
Q ss_pred HHHHHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHh---------------HHhhhchh--hhh-----hhHHH
Q psy8862 155 SGTIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLL---------------KLVKIDLV--NII-----ENLPN 212 (265)
Q Consensus 155 aG~~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~---------------~~~~~g~~--~~~-----~~l~~ 212 (265)
+|++++|||||+|||||+|||+|++|++||++++|+++++.. +...++.. ... +++..
T Consensus 157 ~Gt~i~~wL~E~Itk~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~l~~l~~ 236 (462)
T PRK08568 157 LGGILIILLDELVSKWGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTTRGLLLLG 236 (462)
T ss_pred HHHHHHHHHHHHHHhcCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHhcCccchhhhhcccccHHHH
Confidence 999999999999999999999999999999999999998765 11112211 112 45667
Q ss_pred HHHHHHHHhhhheeeeeeEEEEEeeeeecCCCccccCCCccccCC
Q psy8862 213 ATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 213 ~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
+++++++++++||+|++|||||+||+| .+| +++|+|-|
T Consensus 237 ~~~~~~i~~~~v~~q~~~~~IPI~~~k-~~g------~~s~iPiK 274 (462)
T PRK08568 237 LITTIVIFLIVVYLESMRVEIPLSHGR-VRG------ARGRYPLK 274 (462)
T ss_pred HHHHHHHHHHheeEEeeEEEEEEEecc-ccC------CCceeeEE
Confidence 777888899999999999999999997 333 56788754
No 8
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=1.1e-48 Score=371.92 Aligned_cols=222 Identities=26% Similarity=0.373 Sum_probs=181.1
Q ss_pred hhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHhHHHHHHHHhc
Q psy8862 14 HYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSSIIMQLLSS 89 (265)
Q Consensus 14 ~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~Qll~~ 89 (265)
.+|+|++||+++ |+|++||+||+|.+.. .. +.+++++++++|+++||+++++|+|+|||+|||||||+||+++.
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~-~~-~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~ 78 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQ-DM-EGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSF 78 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhH-HH-hcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHh
Confidence 379999999988 9999999999999762 22 22235799999999999999999999999999999999999988
Q ss_pred -cchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8862 90 -IMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLVSGTIFLMWLSEQIT 168 (265)
Q Consensus 90 -~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG~~~~~wL~e~it 168 (265)
.+|++++++|| |.|| .||++|+++|++||.+++.++.+..+. . + .+.+.++++|++|+++++||||+||
T Consensus 79 ~~~~~l~~~~~~-~~~~-----~tr~ltl~~a~iQs~~~~~~~~~~~~~-~--~-~~~~~~vl~L~~Gt~iv~wL~E~it 148 (395)
T TIGR02920 79 TKSDGFDAQSPK-EQQY-----RERFLTLIIAIIQGLAIIHSFTNKNGL-S--D-FNMLLATLILVTGTCLLVWLADLNA 148 (395)
T ss_pred CcCcchhhhCHH-HhhH-----HHHHHHHHHHHHHHHHHHHHhhccccc-c--h-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999988 5555 389999999999999998876642221 1 2 3567789999999999999999999
Q ss_pred hhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeecCCCcccc
Q psy8862 169 EYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTV 248 (265)
Q Consensus 169 ~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g~~~~~ 248 (265)
|||+| |+|++|++||++++|+++.+.++. .. .....+..+++++++++++++|++|||||++|+||.. ++
T Consensus 149 ~~GiG-G~sllI~~~I~s~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~~-~~--- 218 (395)
T TIGR02920 149 KYGIG-GSMPIVLVSMLKNIPSNVFELFQM-SY----IWLIALLILLTLVALFLLAFIERAEYRIPVNDISLHN-RS--- 218 (395)
T ss_pred CCCcc-hHHHHHHHHHHHHHHHHHHHHHhc-ch----HHHHHHHHHHHHHHHHHHHheecceEEEEEEEchhhc-cC---
Confidence 99999 999999999999999998776542 11 1122333445556666799999999999999997654 22
Q ss_pred CCCccccCC
Q psy8862 249 ELTPYDLSR 257 (265)
Q Consensus 249 ~~~~y~~~~ 257 (265)
++++|+|-|
T Consensus 219 ~~~~yiPiK 227 (395)
T TIGR02920 219 NLMSYLPIK 227 (395)
T ss_pred CCCcccceE
Confidence 578998865
No 9
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=4.8e-48 Score=374.28 Aligned_cols=224 Identities=18% Similarity=0.215 Sum_probs=177.4
Q ss_pred CccCCCCcCchh----hHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCc
Q psy8862 3 LNNILPNKDAKH----YKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGI 74 (265)
Q Consensus 3 ~~~~~~~~~~~~----l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI 74 (265)
+.+++|++++|+ +|+|++||+++ |+|++||+||+|.++.. |+++++.+.++|+ ++|+|+|||
T Consensus 14 ~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~-------~~~~~~~~ifag~---~~slf~LGI 83 (474)
T PTZ00219 14 AMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSS-------DPFYWMRVILASN---RGTLMELGI 83 (474)
T ss_pred HHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhcc-------chHHHHHHHHhcC---cchHHHhcc
Confidence 457889888655 99999999988 99999999999997532 5677788888885 899999999
Q ss_pred hHHHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHH
Q psy8862 75 MPYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLV 154 (265)
Q Consensus 75 ~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 154 (265)
+|||||||+||++++ -++.+++++.+++|+|+|++||++|+++|++||++++....+ +...+.+..+.++++++|+
T Consensus 84 ~PyItAsII~QLL~~--~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~--g~~~~~~~~~~~~iilqL~ 159 (474)
T PTZ00219 84 SPIVTSSMVMQLLAG--SKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMY--GDISEIGAGNAILIILQLF 159 (474)
T ss_pred HHHHHHHHHHHHHhh--CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccccCccHHHHHHHHHHHH
Confidence 999999999999975 234445555567799999999999999999999999844222 2222333446788999999
Q ss_pred HHHHHHHHHHHHHhh-hcCCcchHHHHHHHHhhhhHHHHHHHhHHh------hhchh-h---------------------
Q psy8862 155 SGTIFLMWLSEQITE-YGLGNGTSIIICSGIISSFPNILINLLKLV------KIDLV-N--------------------- 205 (265)
Q Consensus 155 aG~~~~~wL~e~it~-~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~------~~g~~-~--------------------- 205 (265)
+|+++++||||++|| ||+|||+||+|++||++++||+.+++.... ..|.+ .
T Consensus 160 ~g~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r 239 (474)
T PTZ00219 160 FAGIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYR 239 (474)
T ss_pred HHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhh
Confidence 999999999999999 999999999999999999997766422110 00100 0
Q ss_pred -hhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeee
Q psy8862 206 -IIENLPNATFKVKLENDHVILGHISGKMRMNYIRI 240 (265)
Q Consensus 206 -~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~ 240 (265)
..+.++.+++++++++++||+|+++||||++|+|+
T Consensus 240 ~~l~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~ 275 (474)
T PTZ00219 240 PHLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKV 275 (474)
T ss_pred cccccHHHHHHHHHHHHhheeeeeeEEEEeeecccc
Confidence 01234455777888899999999999999999974
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=1.6e-41 Score=317.99 Aligned_cols=185 Identities=40% Similarity=0.610 Sum_probs=155.6
Q ss_pred hhhhhCchHHHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-----Cch
Q psy8862 68 TIFSLGIMPYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVL-----DTS 142 (265)
Q Consensus 68 SlfsLGI~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~-----~~~ 142 (265)
|+|+|||+|||||||+||++.. |+++++|+|||+||+|++++||++|+++|++||++++..+.+...... +.+
T Consensus 1 SlfsLGI~PyitAsIi~Qll~~--~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~ 78 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLII--PKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSG 78 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHHS--SSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTC
T ss_pred ChHhhccHHHHHHHHHHHHHhc--ccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchH
Confidence 7999999999999999999944 999999999999999999999999999999999999987776421111 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhh--hch-hhhhhhHHHHHHHHHH
Q psy8862 143 FYFHFTTVLTLVSGTIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVK--IDL-VNIIENLPNATFKVKL 219 (265)
Q Consensus 143 ~~~~~~~vl~L~aG~~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~--~g~-~~~~~~l~~~~~~l~~ 219 (265)
....+.++++|++|+++++||||+|||||+|||+|++|++||++++|+++.+.++... .++ .++...+..+++++++
T Consensus 79 ~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 158 (346)
T PF00344_consen 79 FINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALFLLIILIITLVV 158 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999888776643 121 2344557778888888
Q ss_pred HhhhheeeeeeEEEEEeeeeecCCCccccCCCccccCC
Q psy8862 220 ENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 220 i~~~V~l~~a~rrIPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
++++|++|++|||||+||+|+. +...++++|+|-|
T Consensus 159 ~~~~v~l~~~~~rIPi~~~~~~---~~~~~~~~ylPik 193 (346)
T PF00344_consen 159 IALVVYLQEAERRIPIQYARIV---NSSRGQSSYLPIK 193 (346)
T ss_dssp HHHHHHHHHCEEEECEBBSSSB-----SSSBCSCEEEE
T ss_pred HHhheeeeeeEEEEEEEecccc---ccCcccceeeeee
Confidence 9999999999999999999864 3335668888854
No 11
>KOG1373|consensus
Probab=100.00 E-value=2.1e-33 Score=258.94 Aligned_cols=227 Identities=21% Similarity=0.223 Sum_probs=196.4
Q ss_pred ccCCCCcCchh----hHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCch
Q psy8862 4 NNILPNKDAKH----YKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIM 75 (265)
Q Consensus 4 ~~~~~~~~~~~----l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~ 75 (265)
-+++|+++.|| +++|++||... .++++||++|+..++ +++++++++.+.|. ++.|+++||+.
T Consensus 14 ~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssd--------t~DP~yw~Rvilas--nrgTLMelGis 83 (476)
T KOG1373|consen 14 LSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSD--------TADPFYWMRVILAS--NRGTLMELGIS 83 (476)
T ss_pred hccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCC--------CCCcHHHHHHHHhc--CCcchhhhccc
Confidence 46789999888 99999999877 789999999997653 25788899999998 99999999999
Q ss_pred HHHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHH
Q psy8862 76 PYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLVS 155 (265)
Q Consensus 76 PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~a 155 (265)
|.+|++.+||+|++ .++.+.+.+-++||..+|..||.+++++++.|+..++....| |...+.+....+++++||+.
T Consensus 84 PivtSglimQlLag--~kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~y--G~p~dLg~~~clLii~QL~~ 159 (476)
T KOG1373|consen 84 PIVTSGLIMQLLAG--SKIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMY--GSPSDLGVGICLLIILQLFF 159 (476)
T ss_pred hhhHHHHHHHHHcc--CcEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CChhhcchhHHHHHHHHHHH
Confidence 99999999999998 678888888899999999999999999999999999998877 43345556677899999999
Q ss_pred HHHHHHHHHHHHhh-hcCCcchHHHHHHHHhhhhHHHHHHHhHHh------hhchh-h----------------------
Q psy8862 156 GTIFLMWLSEQITE-YGLGNGTSIIICSGIISSFPNILINLLKLV------KIDLV-N---------------------- 205 (265)
Q Consensus 156 G~~~~~wL~e~it~-~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~------~~g~~-~---------------------- 205 (265)
.+.+++.|||+++| ||+|||+|++|.+|||+++.|+-+++-+.. .+|++ +
T Consensus 160 Agiiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~Rq 239 (476)
T KOG1373|consen 160 AGIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQ 239 (476)
T ss_pred hhHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 99999999999999 999999999999999999999987753321 01221 1
Q ss_pred hhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeecCCCc
Q psy8862 206 IIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDK 245 (265)
Q Consensus 206 ~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g~~ 245 (265)
.++++..++.+++++++++|+|.-+.++|++++| .||.+
T Consensus 240 nLPNl~nl~at~lif~iViYlQgfRVeLPirS~r-~RG~~ 278 (476)
T KOG1373|consen 240 NLPNLTNLLATVLIFLIVIYLQGFRVELPIRSTR-ARGQY 278 (476)
T ss_pred cccHHHHHHHHHHHHHHHhhccceEEEeeecchh-hcccC
Confidence 1588999999999999999999999999999885 67644
No 12
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=91.90 E-value=0.14 Score=39.01 Aligned_cols=34 Identities=65% Similarity=1.106 Sum_probs=27.3
Q ss_pred EEEEeeeeecCCCccccCCCccccCCceeeeecC
Q psy8862 232 KMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265 (265)
Q Consensus 232 rIPi~~~r~~~g~~~~~~~~~y~~~~~~~~~~~~ 265 (265)
|+-..+-|...|.+...+-+.|-++||+|+||.+
T Consensus 39 KmR~~rIrIl~GD~V~VE~spYDltkGRIiyR~~ 72 (87)
T PRK12442 39 RMRKHRIRILAGDRVTLELSPYDLTKGRINFRHK 72 (87)
T ss_pred ceeeeeEEecCCCEEEEEECcccCCceeEEEEec
Confidence 4444555667788888888999999999999973
No 13
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=87.91 E-value=0.13 Score=32.56 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=20.1
Q ss_pred ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhcc
Q psy8862 26 GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGG 62 (265)
Q Consensus 26 ~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg 62 (265)
.++++||++|++... .++++++++.+.+|
T Consensus 4 l~ls~ipLyG~~~~~--------~~D~f~~~R~i~As 32 (35)
T PF10559_consen 4 LFLSQIPLYGLQSAS--------SSDPFYWLRAIFAS 32 (35)
T ss_dssp HHHHHSB-STSTTTT--------SSCCHTTTHHHHTS
T ss_pred EEeeCCccccccCCC--------cCCHHHHHHHHHcc
Confidence 467899999993322 15678888888776
No 14
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=82.74 E-value=0.63 Score=33.94 Aligned_cols=26 Identities=81% Similarity=1.403 Sum_probs=21.1
Q ss_pred eeecCCCccccCCCccccCCceeeee
Q psy8862 238 IRILPGDKVTVELTPYDLSRGRIIFR 263 (265)
Q Consensus 238 ~r~~~g~~~~~~~~~y~~~~~~~~~~ 263 (265)
-+...|.+..-+-+.|-++||+|+||
T Consensus 43 I~I~~GD~V~Ve~spyd~tkgrIi~R 68 (68)
T TIGR00008 43 IRILPGDKVKVELSPYDLTRGRITYR 68 (68)
T ss_pred EEECCCCEEEEEECcccCCcEeEEeC
Confidence 34456777777789999999999998
No 15
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=58.63 E-value=27 Score=27.48 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHhhhccccccchhhhhCchHHHhHHHHHHHHhccch-hhhhhhhcchhhHHHHHHHHHHHHHH
Q psy8862 56 FNMFSGGALSRLTIFSLGIMPYISSSIIMQLLSSIMP-KFENLKKEGELGKYKIAQYIRFSTLI 118 (265)
Q Consensus 56 ~~~~sGg~~~~~SlfsLGI~PyItAsIi~Qll~~~~p-~l~~l~~~g~~gr~k~~~~tr~ltl~ 118 (265)
--.+.-|.-...-.+. .-.++.||++|++.++.- ...+.+.+.++.+++.+..-.+.+..
T Consensus 29 k~vl~~g~~~~~y~~~---l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~ 89 (104)
T PF04923_consen 29 KYVLEVGPEHPFYYFL---LTLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATIL 89 (104)
T ss_pred HHHHHcCCCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3344444334455555 346889999999987432 34445545455555555555544443
No 16
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=55.90 E-value=1.8e+02 Score=28.31 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.9
Q ss_pred cCCcchHHHHHHHHhhhhHHHHHHHh
Q psy8862 171 GLGNGTSIIICSGIISSFPNILINLL 196 (265)
Q Consensus 171 GiGnG~SLiI~~gI~~~lp~~l~~~~ 196 (265)
|+| |+|++|++|+.-...+++-+..
T Consensus 383 ~~g-gtslLI~Vgv~~~~~~qi~a~~ 407 (417)
T CHL00161 383 GLG-TTSLLILVGVAIDTSRQIQTYL 407 (417)
T ss_pred ccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence 677 8999999999999988875543
No 17
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=51.03 E-value=12 Score=27.85 Aligned_cols=27 Identities=70% Similarity=1.271 Sum_probs=20.9
Q ss_pred eeecCCCccccCCCccccCCceeeeec
Q psy8862 238 IRILPGDKVTVELTPYDLSRGRIIFRT 264 (265)
Q Consensus 238 ~r~~~g~~~~~~~~~y~~~~~~~~~~~ 264 (265)
-+...|......-+.|-++||+|+||.
T Consensus 45 i~I~~GD~V~Ve~~~~d~~kg~I~~Ry 71 (75)
T COG0361 45 IRILPGDVVLVELSPYDLTKGRIVYRY 71 (75)
T ss_pred EEeCCCCEEEEEecccccccccEEEEe
Confidence 344456666667789999999999996
No 18
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=34.97 E-value=1.8e+02 Score=23.28 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-cccccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8862 113 RFSTLILAILQGSGISLILKSQ-KNLVLDT---SFYFHFTTVLTLVSGTIFLMWLSEQITE 169 (265)
Q Consensus 113 r~ltl~la~iQs~~~~~~~~~~-~~~~~~~---~~~~~~~~vl~L~aG~~~~~wL~e~it~ 169 (265)
-...+.+|++|...-...+... .+....+ ...+.+.++++.++|++-+|+=.+.++.
T Consensus 49 ~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~Wvm~~~n~~mm 109 (111)
T COG3125 49 LIIILGLAVIQILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNMM 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccceehHHHHHHHHHHHHHHHHHHHHHHccccccC
Confidence 4666889999998755444321 1111111 1356677888889999999887766553
No 19
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=30.67 E-value=2.7e+02 Score=22.01 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-ccccCc---hhHHHHHHHHHHHHHHHHHHH
Q psy8862 113 RFSTLILAILQGSGISLILKSQK-NLVLDT---SFYFHFTTVLTLVSGTIFLMW 162 (265)
Q Consensus 113 r~ltl~la~iQs~~~~~~~~~~~-~~~~~~---~~~~~~~~vl~L~aG~~~~~w 162 (265)
...-+++|++|...-...+.... +....+ ...+.+.++++++.|+.-+||
T Consensus 47 ~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 47 LGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35556788999887655443211 110111 234567778899999987777
No 20
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=30.21 E-value=31 Score=25.50 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.8
Q ss_pred cCCCccccCCCccccCCceeeeec
Q psy8862 241 LPGDKVTVELTPYDLSRGRIIFRT 264 (265)
Q Consensus 241 ~~g~~~~~~~~~y~~~~~~~~~~~ 264 (265)
..|....-+-+.|-++||+|++|.
T Consensus 40 ~~GD~V~Ve~~~~d~~kg~Iv~r~ 63 (77)
T cd05793 40 NEGDIVLVAPWDFQDDKADIIYKY 63 (77)
T ss_pred cCCCEEEEEeccccCCEEEEEEEc
Confidence 356666777789999999999996
No 21
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=29.64 E-value=3.8e+02 Score=24.03 Aligned_cols=63 Identities=14% Similarity=-0.098 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8862 104 GKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLVSGTIFLMWLSEQ 166 (265)
Q Consensus 104 gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG~~~~~wL~e~ 166 (265)
-+....+|+--+|+.=-.+-+.++.+.+.-++++........++..+..|..+-..+.||.|.
T Consensus 34 ~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slymfrwal~~lye~ 96 (251)
T COG5415 34 SQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYMFRWALTKLYEF 96 (251)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344445555444444333334444433332233321111223334455566666678888875
No 22
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=24.46 E-value=3.3e+02 Score=20.98 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-ccccCc---hhHHHHHHHHHHHHHHHHHHH
Q psy8862 113 RFSTLILAILQGSGISLILKSQK-NLVLDT---SFYFHFTTVLTLVSGTIFLMW 162 (265)
Q Consensus 113 r~ltl~la~iQs~~~~~~~~~~~-~~~~~~---~~~~~~~~vl~L~aG~~~~~w 162 (265)
...-++.|++|...-...+.... +....+ ...+.+.+++.+++||.-+|+
T Consensus 36 ~~~i~~~A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 36 LVIIIVLAVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778899887655443221 100111 235667888999999988877
No 23
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=21.14 E-value=7.9e+02 Score=24.09 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=20.9
Q ss_pred hcCCcchHHHHHHHHhhhhHHHHHHHh
Q psy8862 170 YGLGNGTSIIICSGIISSFPNILINLL 196 (265)
Q Consensus 170 ~GiGnG~SLiI~~gI~~~lp~~l~~~~ 196 (265)
.++| |+|++|++|++-...+++-+..
T Consensus 396 ~~~g-GTslLI~VgV~ldt~~qi~s~l 421 (434)
T PRK12907 396 AQIG-GTSLLIIVGVALETMKTLESQL 421 (434)
T ss_pred cccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence 3355 9999999999999988876543
No 24
>PF14293 YWFCY: YWFCY protein
Probab=21.02 E-value=2.5e+02 Score=20.05 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=27.1
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8862 99 KEGELGKYKIAQYIRFSTLILAILQGSGISLI 130 (265)
Q Consensus 99 ~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~ 130 (265)
.|...|-+|+...+|.+.+++-++.-+-+++.
T Consensus 3 eddlr~L~KImdf~R~iSI~~l~ih~Y~~CY~ 34 (61)
T PF14293_consen 3 EDDLRALRKIMDFMRAISILFLVIHFYWFCYE 34 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999888777765
No 25
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=20.36 E-value=2.7e+02 Score=21.19 Aligned_cols=36 Identities=8% Similarity=-0.150 Sum_probs=15.7
Q ss_pred HHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhhe
Q psy8862 190 NILINLLKLVKIDLVNIIENLPNATFKVKLENDHVI 225 (265)
Q Consensus 190 ~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~ 225 (265)
+...+.++..++|.-.|-.+...+++-++++++++|
T Consensus 44 ~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viw 79 (87)
T PF11190_consen 44 KAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIW 79 (87)
T ss_pred HHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHH
Confidence 334445544444433344444444444444444443
Done!