Query psy8862
Match_columns 265
No_of_seqs 118 out of 1410
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:16:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 6.4E-66 2.2E-70 492.5 21.8 250 8-257 7-265 (434)
2 3dl8_G Preprotein translocase 100.0 1.4E-66 4.9E-71 496.9 10.7 255 3-257 2-266 (429)
3 3din_C Preprotein translocase 100.0 3E-65 1E-69 487.8 11.1 251 3-257 2-264 (431)
4 3j01_A Preprotein translocase 100.0 6.6E-65 2.2E-69 485.9 7.3 246 12-257 9-261 (435)
5 1rh5_A Preprotein translocase 100.0 6.6E-56 2.3E-60 423.9 17.6 227 5-257 9-250 (436)
6 2ww9_A SEC sixty-one protein h 100.0 3.3E-55 1.1E-59 424.0 14.8 234 3-257 13-287 (490)
7 3mp7_A Preprotein translocase 100.0 2E-56 6.9E-61 431.8 5.8 232 3-257 10-280 (482)
8 2wwb_A Protein transport prote 100.0 1.1E-51 3.9E-56 398.4 10.4 229 5-257 14-282 (476)
9 3i4o_A Translation initiation 74.4 0.64 2.2E-05 33.8 0.0 25 241-265 55-79 (79)
10 3mp7_A Preprotein translocase 29.4 79 0.0027 30.1 5.9 29 165-195 425-453 (482)
11 1jt8_A EIF-1A, probable transl 27.7 18 0.00061 27.3 0.8 24 241-264 60-84 (102)
12 2ww9_A SEC sixty-one protein h 26.3 90 0.0031 29.7 5.7 51 145-198 420-473 (490)
13 1d7q_A Translation initiation 24.8 31 0.0011 27.6 1.8 23 242-264 72-94 (143)
14 2wwb_A Protein transport prote 23.2 1E+02 0.0034 29.3 5.3 45 146-193 415-462 (476)
15 1rh5_A Preprotein translocase 22.2 1E+02 0.0035 28.8 5.1 44 148-194 374-420 (436)
16 2dgy_A MGC11102 protein; EIF-1 21.9 34 0.0012 26.1 1.5 23 242-264 56-79 (111)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=6.4e-66 Score=492.52 Aligned_cols=250 Identities=31% Similarity=0.569 Sum_probs=213.7
Q ss_pred CCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHhHHHH
Q psy8862 8 PNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSSII 83 (265)
Q Consensus 8 ~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi 83 (265)
+.+++||+|||++||+++ |+|+|||+||+|.+++++.++++++++++++|+|+||+++++|+|+|||+|||||||+
T Consensus 7 ~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItASII 86 (434)
T 2zjs_Y 7 SALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAII 86 (434)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHHH
T ss_pred hHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHHHH
Confidence 468899999999999988 9999999999999988776544335789999999999999999999999999999999
Q ss_pred HHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc--cccC--chhHHHHHHHHHHHHHHH
Q psy8862 84 MQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILK-SQKN--LVLD--TSFYFHFTTVLTLVSGTI 158 (265)
Q Consensus 84 ~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~-~~~~--~~~~--~~~~~~~~~vl~L~aG~~ 158 (265)
||||+.++|.++|++||||+||+|+|+||||+|+++|++||++++.++. ...+ ...+ ++..+.++++++|++|++
T Consensus 87 ~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt~ 166 (434)
T 2zjs_Y 87 MQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIA 166 (434)
T ss_dssp HHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHHH
Confidence 9999989999999999999999999999999999999999999998864 2112 2223 445567899999999999
Q ss_pred HHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeeeEEEEEeee
Q psy8862 159 FLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRMNYI 238 (265)
Q Consensus 159 ~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~ 238 (265)
++|||||+|||||+|||+|++|++||++++|+++.+.++...+|+.++...++.+++++++++++||+|++||||||||+
T Consensus 167 ~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~vV~~~~~~rrIPvqya 246 (434)
T 2zjs_Y 167 LLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPVQYA 246 (434)
T ss_dssp HHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEC
T ss_pred HHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHheeeEEEEeehhh
Confidence 99999999999999999999999999999999998887765545444445556677788888999999999999999999
Q ss_pred eecCCCccccCCCccccCC
Q psy8862 239 RILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 239 r~~~g~~~~~~~~~y~~~~ 257 (265)
||++|||+++++++|+|-|
T Consensus 247 kr~~gr~~~~g~~s~lPlK 265 (434)
T 2zjs_Y 247 RKVVGGRVYGGQATYIPIK 265 (434)
T ss_dssp C-------CCCCEEEEEEE
T ss_pred hhhccCcccCCcceEEeee
Confidence 9999999999999999865
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=1.4e-66 Score=496.88 Aligned_cols=255 Identities=33% Similarity=0.601 Sum_probs=211.3
Q ss_pred CccCCCCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHH
Q psy8862 3 LNNILPNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYI 78 (265)
Q Consensus 3 ~~~~~~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyI 78 (265)
++.+.+.|++||+|||++||+++ |+|+|||+||+|.++.++.++.+++++++++|+++||+++++|+|+|||+|||
T Consensus 2 ~~~~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyI 81 (429)
T 3dl8_G 2 SEYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYI 81 (429)
T ss_dssp ------CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHH
T ss_pred hHHHHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHH
Confidence 35677899999999999999988 99999999999998876544322357999999999999999999999999999
Q ss_pred hHHHHHHHHhccchhhhhhhh-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cccccCchhHHHHHHHHH
Q psy8862 79 SSSIIMQLLSSIMPKFENLKK-EGELGKYKIAQYIRFSTLILAILQGSGISLILKSQ-----KNLVLDTSFYFHFTTVLT 152 (265)
Q Consensus 79 tAsIi~Qll~~~~p~l~~l~~-~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~-----~~~~~~~~~~~~~~~vl~ 152 (265)
||||+||+|+.++|+++|++| |||+||+|+|+||||+|+++|++||++++.++.+. ++...+++..+.++++++
T Consensus 82 tAsII~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 161 (429)
T 3dl8_G 82 SASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLT 161 (429)
T ss_dssp HHHHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999998877642 122234455678899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeeeEE
Q psy8862 153 LVSGTIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGK 232 (265)
Q Consensus 153 L~aG~~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~rr 232 (265)
||+|++++|||||+|||||+|||+|++|++||++++|+++.+.++....|+.++..++..+++++++++++||+|++|||
T Consensus 162 L~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~g~~~~~~~l~~l~~~l~vi~~vV~~~~~~rr 241 (429)
T 3dl8_G 162 LVAGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERR 241 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHHHHHHHHHHHHHHHHTCSCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHheeeEEE
Confidence 99999999999999999999999999999999999999987765432224444556677788888889999999999999
Q ss_pred EEEeeeeecCCCccccCCCccccCC
Q psy8862 233 MRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 233 IPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
||+||+||+.|||+++|+++|+|-|
T Consensus 242 IPvqyakr~~g~~~~~g~~~~iPlK 266 (429)
T 3dl8_G 242 IPIQYPGRQVGRQLYAGRKTYLPIK 266 (429)
T ss_dssp CCCBCSSSCBCCCCCCCCCCCCCCC
T ss_pred EEEEEchhhccccccCCCCceeeee
Confidence 9999999999999999999999976
No 3
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=3e-65 Score=487.80 Aligned_cols=251 Identities=28% Similarity=0.533 Sum_probs=208.2
Q ss_pred CccCCCCcCchhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhc---c--cchHHHHHhhhccccccchhhhhC
Q psy8862 3 LNNILPNKDAKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKN---Q--NNILGMFNMFSGGALSRLTIFSLG 73 (265)
Q Consensus 3 ~~~~~~~~~~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~---~--~~~l~~~~~~sGg~~~~~SlfsLG 73 (265)
++.+.+.|++||+|+|++||+++ |+|+|||+||+|.+++++.++++ + +++++++|+|+||+++++|+|+||
T Consensus 2 ~~~~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLG 81 (431)
T 3din_C 2 WQAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMS 81 (431)
T ss_dssp ------CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSS
T ss_pred hHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHh
Confidence 35677899999999999999988 99999999999998875543321 2 468999999999999999999999
Q ss_pred chHHHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc-cCch-hHHHHHHH
Q psy8862 74 IMPYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQK-NLV-LDTS-FYFHFTTV 150 (265)
Q Consensus 74 I~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~-~~~-~~~~-~~~~~~~v 150 (265)
|+|||||||+||+|+.++|+++|++||||+||+|+|+||||+|+++|++||++++.++.+.+ +.. .+++ ..+.++++
T Consensus 82 I~PyItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (431)
T 3din_C 82 VTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLST 161 (431)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998775421 111 2333 56788999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeee
Q psy8862 151 LTLVSGTIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHIS 230 (265)
Q Consensus 151 l~L~aG~~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~ 230 (265)
++||+|++++|||||+|||||+|||+|++|++||++++|+++.+.++ |+.++..++..+++++++++++||+|++|
T Consensus 162 l~L~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~----~~~~~~~~l~~l~~~l~vi~~vV~~~~~~ 237 (431)
T 3din_C 162 MSMLAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL----GGLNLLEWIFLIAVALITIFGIILVQQAE 237 (431)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS----CCSCTHHHHHHHHHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHhheeeE
Confidence 99999999999999999999999999999999999999998776542 23334566777888888899999999999
Q ss_pred EEEEEeeeeecCCCccccCCCccccCC
Q psy8862 231 GKMRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 231 rrIPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
|||||||+||+.|||+++|+++|+|-|
T Consensus 238 rrIPvqyakr~~g~~~~~g~~~~iPlK 264 (431)
T 3din_C 238 RRITIQYARRVTGRRVYGGASTYLPIK 264 (431)
T ss_dssp CCCCCCBTTTBCCCCCCCCCCCCCCCC
T ss_pred EEEEEEechhhccccccCCCcceeeee
Confidence 999999999999999999999999976
No 4
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=6.6e-65 Score=485.92 Aligned_cols=246 Identities=42% Similarity=0.673 Sum_probs=213.5
Q ss_pred chhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchHHHhHHHHHHHH
Q psy8862 12 AKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSSIIMQLL 87 (265)
Q Consensus 12 ~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~Qll 87 (265)
.||+|||++||+++ |+|+|||+||+|.+++++.++++++++++++|+|+||+++++|+|+|||+|||||||+||||
T Consensus 9 ~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QLL 88 (435)
T 3j01_A 9 LGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLL 88 (435)
T ss_dssp SCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHHH
Confidence 48999999999988 99999999999998765443322346899999999999999999999999999999999999
Q ss_pred hccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy8862 88 SSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQ---KNLVLDTSFYFHFTTVLTLVSGTIFLMWLS 164 (265)
Q Consensus 88 ~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~---~~~~~~~~~~~~~~~vl~L~aG~~~~~wL~ 164 (265)
+.++|+++|++||||+||+|+|++|||+|+++|++||++++.++... .+...+++..+.++++++||+|++++||||
T Consensus 89 ~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~ 168 (435)
T 3j01_A 89 TVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLG 168 (435)
T ss_dssp HHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877532 122223444467889999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeecCCC
Q psy8862 165 EQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGD 244 (265)
Q Consensus 165 e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g~ 244 (265)
|+|||||+|||+|++|++||++++|+++.+.++..+.+..++...+..+++++++++++||+|++||||||||+||++||
T Consensus 169 E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~ 248 (435)
T 3j01_A 169 EQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGR 248 (435)
T ss_dssp HHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSSSSTTSSSHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCSSC
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhheeEEEEEEEehhhhccc
Confidence 99999999999999999999999999887665443334333444566677788888999999999999999999999999
Q ss_pred ccccCCCccccCC
Q psy8862 245 KVTVELTPYDLSR 257 (265)
Q Consensus 245 ~~~~~~~~y~~~~ 257 (265)
|+++|+++|+|-|
T Consensus 249 ~~~~g~~s~iPlK 261 (435)
T 3j01_A 249 RVYAAQSTHLPLK 261 (435)
T ss_dssp CCCCCCCCCCSCC
T ss_pred cccCCCCceeeee
Confidence 9999999999976
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=6.6e-56 Score=423.87 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=189.0
Q ss_pred cCCCCcC----chhhHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchH
Q psy8862 5 NILPNKD----AKHYKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMP 76 (265)
Q Consensus 5 ~~~~~~~----~~~l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~P 76 (265)
+++|+++ ++|+|+|++||+++ |+|+|||+||+|.++. ++++++|+++| ++++|+|+|||+|
T Consensus 9 ~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~---------~~~~~~~~~~a--~~~~sifaLGI~P 77 (436)
T 1rh5_A 9 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP---------AIFEFWQTITA--SRIGTLITLGIGP 77 (436)
T ss_dssp HHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC---------SCCTTHHHHHT--CCTTBTTTTTTHH
T ss_pred HhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH---------HHHHHHHHhhc--cccchHHHHccHH
Confidence 3456654 45699999999988 9999999999998643 36778999985 4899999999999
Q ss_pred HHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHH
Q psy8862 77 YISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLVSG 156 (265)
Q Consensus 77 yItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG 156 (265)
||||||+||||+. -.+.+++||||+||+|+|++|||+|+++|++||++++.+..+ .+++..+.++++++|++|
T Consensus 78 yItAsII~QLL~g--~~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g~~-----~~~~~~~~~~~vl~L~~G 150 (436)
T 1rh5_A 78 IVTAGIIMQLLVG--SGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAF-----GILTPLLAFLVIIQIAFG 150 (436)
T ss_dssp HHHHHHHHHHHHH--HTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-----CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCchHHHHHHHHHHHHH
Confidence 9999999999964 133488999999999999999999999999999999876222 123445678899999999
Q ss_pred HHHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHH-------HhHHhhhchhhhhhhHHHHHHHHHHHhhhheeeee
Q psy8862 157 TIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILIN-------LLKLVKIDLVNIIENLPNATFKVKLENDHVILGHI 229 (265)
Q Consensus 157 ~~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~-------~~~~~~~g~~~~~~~l~~~~~~l~~i~~~V~l~~a 229 (265)
++++|||||+|||||+|||+|++|++||++++|+++++ .++...+|..++.. +..+++++++++++||+|++
T Consensus 151 t~~lmwL~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~~~~~~~~~~-l~~l~~~l~v~~~vV~~~~~ 229 (436)
T 1rh5_A 151 SIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY-IAPIIGTIIVFLMVVYAECM 229 (436)
T ss_dssp HHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG-THHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHhhcce
Confidence 99999999999999999999999999999999999888 55544333222222 55666778888899999999
Q ss_pred eEEEEEeeeeecCCCccccCCCccccCC
Q psy8862 230 SGKMRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 230 ~rrIPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
|||||+||+| + +++++|+|-|
T Consensus 230 ~rrIPvqyak-~------~g~~~~lPlK 250 (436)
T 1rh5_A 230 RVEIPLAHGR-I------KGAVGKYPIK 250 (436)
T ss_dssp EEEEECCCSS-S------TTCCCEEEEE
T ss_pred EEEEEEEecc-c------CCccceeeee
Confidence 9999999997 3 4778898854
No 6
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=3.3e-55 Score=424.04 Aligned_cols=234 Identities=17% Similarity=0.171 Sum_probs=192.1
Q ss_pred CccCCCCcCchh----hHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCc
Q psy8862 3 LNNILPNKDAKH----YKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGI 74 (265)
Q Consensus 3 ~~~~~~~~~~~~----l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI 74 (265)
+-+++|++++|+ +|+|++||+++ |+ +|||+||+|.+++ ++ ++++++++|+++|+ +++|+|+|||
T Consensus 13 ~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~---~~--~~~~~~~~~~~~a~--~~~sifaLGI 84 (490)
T 2ww9_A 13 ILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATT---PN--VNDPIYFLRGVFGC--EPRTLLEFGL 84 (490)
T ss_dssp SGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTT---TC--SSCCCTTTHHHHTC--CSSSTTSSTT
T ss_pred HHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHH---hc--ccCHHHHHHHHHcc--cccHHHHHhh
Confidence 456789998776 99999999988 89 9999999998764 11 14588899999964 8999999999
Q ss_pred hHHHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHH
Q psy8862 75 MPYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLV 154 (265)
Q Consensus 75 ~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 154 (265)
+|||||||+||||+. ..+.+++||||+||+|+|++|||+|+++|++||++++.++.+ + .+.+..+.++++++|+
T Consensus 85 ~PyItASII~QLL~g--~~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~~~--~--~~~~~~~~~~ivl~L~ 158 (490)
T 2ww9_A 85 FPNISSGLILQLLAG--LKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYF--G--DDLSVVQIGLINFQLV 158 (490)
T ss_dssp HHHHHHHHHHHHHHH--HTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--S--CCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--CccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c--CCccHHHHHHHHHHHH
Confidence 999999999999964 123338889999999999999999999999999999987543 2 2334456789999999
Q ss_pred HHHHHHHHHHHHHhh-hcCCcchHHHHHHHHhhhhHHHHH--------------------HHhHHh--hh----chh-hh
Q psy8862 155 SGTIFLMWLSEQITE-YGLGNGTSIIICSGIISSFPNILI--------------------NLLKLV--KI----DLV-NI 206 (265)
Q Consensus 155 aG~~~~~wL~e~it~-~GiGnG~SLiI~~gI~~~lp~~l~--------------------~~~~~~--~~----g~~-~~ 206 (265)
+|++++|||||+||| ||+|||+||+|++||++++|++++ +.++.. .. +++ +.
T Consensus 159 ~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~ 238 (490)
T 2ww9_A 159 GAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISA 238 (490)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhH
Confidence 999999999999999 999999999999999999999876 223222 11 111 11
Q ss_pred h-----hhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeecCCCccccCCCccccCC
Q psy8862 207 I-----ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 207 ~-----~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
. +++..+++++++++++||+|++||||||||+|+ +|+++|+|-|
T Consensus 239 ~~r~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~-------~g~~s~lPlK 287 (490)
T 2ww9_A 239 FNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRA-------RGTNNVYPIK 287 (490)
T ss_dssp CSSSSCCSHHHHHHHHHHHHHHHHHTTCCEECCCBCSSS-------SSBCCCCEEC
T ss_pred HhhccccHHHHHHHHHHHHHHHheeeeeEEEEEEEEccc-------CCcCceeeeE
Confidence 1 246677778888889999999999999999975 4788998865
No 7
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=2e-56 Score=431.76 Aligned_cols=232 Identities=18% Similarity=0.251 Sum_probs=153.4
Q ss_pred CccCCCCcCchh----hHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCc
Q psy8862 3 LNNILPNKDAKH----YKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGI 74 (265)
Q Consensus 3 ~~~~~~~~~~~~----l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI 74 (265)
+-+++|++++|+ +|+|++||+++ |+|++||+||+|.++ .++++++|+++|| +++|+|+|||
T Consensus 10 ~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~---------~~~~~~l~~~~Gg--~~~SifaLGI 78 (482)
T 3mp7_A 10 LERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI---------QDYFQFLRVVLAG--RNGSILTLGI 78 (482)
T ss_dssp ----------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSC---------CCSCSSTTTTTCS--CTTBTTSSTT
T ss_pred HHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCccc---------ccHHHHHHHhcCC--CcccHHHHhh
Confidence 345777776655 99999999988 899999999999853 3578899999999 6999999999
Q ss_pred hHHHhHHHHHHHHhccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCchhHHHHHHHHHH
Q psy8862 75 MPYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLV-LDTSFYFHFTTVLTL 153 (265)
Q Consensus 75 ~PyItAsIi~Qll~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~-~~~~~~~~~~~vl~L 153 (265)
+|||||||+||||+. .+++++|||||+||+|+|++|||+|+++|++||++++.++.+ +.. ..++..+.++++++|
T Consensus 79 ~PyITASII~QLL~~--~~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~~~~~--~~~~~~~~~~~~~~ivl~L 154 (482)
T 3mp7_A 79 GPIVTAGIILQLLVG--SEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAF--GRVGVDVTYAIAVLMILQL 154 (482)
T ss_dssp HHHHHHHHHTTC-------------------------CHHHHHHHHHHHHHHHHHSSSS--SCC------CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccccchHHHHHHHHHH
Confidence 999999999999998 489999999999999999999999999999999999987654 111 012234678899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHHhh-----------hchhh-h---------------
Q psy8862 154 VSGTIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVK-----------IDLVN-I--------------- 206 (265)
Q Consensus 154 ~aG~~~~~wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~~~-----------~g~~~-~--------------- 206 (265)
++|++++|||||+|||||+|||+|++|++||++++|+++++.++... .|.+. +
T Consensus 155 ~aGt~~lmwL~E~It~~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~l~~~~~~ 234 (482)
T 3mp7_A 155 AMGGIVLIILDELVSKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYR 234 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSCSSCCC
T ss_pred HHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhcchhhHHHhh
Confidence 99999999999999999999999999999999999999876542210 12110 0
Q ss_pred -hh--hHHHHHHHHHHHhhhheeeeeeEEEEEeeeeecCCCccccCCCccccCC
Q psy8862 207 -IE--NLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 207 -~~--~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
.+ ++..+++++++++++||+|++||||||||+|+ + +++|+|-|
T Consensus 235 ~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~-~-------~~~~iPiK 280 (482)
T 3mp7_A 235 GGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGV-T-------VRGSYPIR 280 (482)
T ss_dssp SSSSCCHHHHHHHHHHHHHHHHHHHCCEEC--------------------CEEC
T ss_pred ccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEeccc-c-------ccceeeEe
Confidence 01 46667778888899999999999999999973 2 67888865
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1.1e-51 Score=398.37 Aligned_cols=229 Identities=19% Similarity=0.200 Sum_probs=184.3
Q ss_pred cCCCCcCchh----hHHHHhhhhhc----ccceeccCCCCChhHHHHHHhhcccchHHHHHhhhccccccchhhhhCchH
Q psy8862 5 NILPNKDAKH----YKKRLGRGIGS----GSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMP 76 (265)
Q Consensus 5 ~~~~~~~~~~----l~~ril~Tl~i----~lg~~IPlPGi~~~~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~P 76 (265)
+++|++++|| +|||++||+++ |+|+|||+||+|.++. +|+++++.++| +++++|+|+|||+|
T Consensus 14 ~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~-------~~~~~~~~~~f---a~~~~SifaLGI~P 83 (476)
T 2wwb_A 14 VILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDS-------ADPFYWMRVIL---ASNRGTLMELGISP 83 (476)
T ss_dssp HHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTC-------SCCCHHHHHHH---CSSCSSSCSSSSTH
T ss_pred HhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhc-------cccHHHHHHHH---ccccccHHHHhhHH
Confidence 5678887775 99999999988 9999999999998751 25688888988 45899999999999
Q ss_pred HHhHHHHHHHH--hccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHH
Q psy8862 77 YISSSIIMQLL--SSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLV 154 (265)
Q Consensus 77 yItAsIi~Qll--~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 154 (265)
||||||+|||| +.++|.+++++ ||+|+|++|||+|+++|++||++++.+..+ +...+.+..+.++++++|+
T Consensus 84 yItASII~QLL~g~~iip~~~~l~-----gR~k~~~~tR~lti~la~iQa~~~v~~g~~--~~~~~~~~~~~~~ivl~L~ 156 (476)
T 2wwb_A 84 IVTSGLIMQLLAGAKIIEVGDTPK-----DRALFNGAQKLFGMIITIGQSIVYVMTGMY--GDPSEMGAGICLLITIQLF 156 (476)
T ss_dssp HHHHHHHHHHHHHHCCCSCCSSSS-----CSSCHHHHHHHHHHHHHHHHHHHHHHHTSS--CCSSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCccHHHHHHHHHHHH
Confidence 99999999999 55889888874 999999999999999999999998873323 2222344456789999999
Q ss_pred HHHHHHHHHHHHHhh-hcCCcchHHHHHHHHhhhhHHHHHHHh------------------HHh--hhc---h----h--
Q psy8862 155 SGTIFLMWLSEQITE-YGLGNGTSIIICSGIISSFPNILINLL------------------KLV--KID---L----V-- 204 (265)
Q Consensus 155 aG~~~~~wL~e~it~-~GiGnG~SLiI~~gI~~~lp~~l~~~~------------------~~~--~~g---~----~-- 204 (265)
+|++++|||||+||| ||+|||+|++|++||++++.|+.+++. +.. ..+ + +
T Consensus 157 ~Gt~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r 236 (476)
T 2wwb_A 157 VAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYR 236 (476)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSS
T ss_pred HHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhc
Confidence 999999999999999 999999999999999999955554432 110 000 0 0
Q ss_pred hhhhhHHHHHHHHHHHhhhheeeeeeEEEEEeeeeecCCCccccCCCccccCC
Q psy8862 205 NIIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSR 257 (265)
Q Consensus 205 ~~~~~l~~~~~~l~~i~~~V~l~~a~rrIPi~~~r~~~g~~~~~~~~~y~~~~ 257 (265)
...+++..+++++++++++||+|++|||||+||+| + +|+++|+|-|
T Consensus 237 ~~l~~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak-~------~g~~~~~PiK 282 (476)
T 2wwb_A 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSAR-Y------RGQYNTYPIK 282 (476)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCS-S------SSBCSCCCBC
T ss_pred cccchHHHHHHHHHHHhheeEEEEEEEEEEEEecc-c------CCccceeeee
Confidence 00113455666688888999999999999999997 4 4678888865
No 9
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=74.38 E-value=0.64 Score=33.77 Aligned_cols=25 Identities=72% Similarity=1.260 Sum_probs=20.0
Q ss_pred cCCCccccCCCccccCCceeeeecC
Q psy8862 241 LPGDKVTVELTPYDLSRGRIIFRTK 265 (265)
Q Consensus 241 ~~g~~~~~~~~~y~~~~~~~~~~~~ 265 (265)
..|.+..-+-+.|-++||+||||.+
T Consensus 55 l~GD~V~ve~~~yd~~kgrIi~R~~ 79 (79)
T 3i4o_A 55 LPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp CTTCEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCEEEEEECccCCCcEEEEEEcC
Confidence 4566666667899999999999975
No 10
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=29.36 E-value=79 Score=30.07 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.3
Q ss_pred HHHhhhcCCcchHHHHHHHHhhhhHHHHHHH
Q psy8862 165 EQITEYGLGNGTSIIICSGIISSFPNILINL 195 (265)
Q Consensus 165 e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~ 195 (265)
|.....| +|+|++|+++++-...+++-+.
T Consensus 425 ~~l~~~g--gGTslLI~VgV~~~~~~qi~s~ 453 (482)
T 3mp7_A 425 DFLGALG--TGTGILLTVGILYRFYEEIARE 453 (482)
T ss_dssp HHHTCSS--CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccC--CceeeeeeHHHHHHHHHHHHHH
Confidence 5555444 6999999999999888886543
No 11
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=27.65 E-value=18 Score=27.29 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=20.1
Q ss_pred cCCCccccCCCccc-cCCceeeeec
Q psy8862 241 LPGDKVTVELTPYD-LSRGRIIFRT 264 (265)
Q Consensus 241 ~~g~~~~~~~~~y~-~~~~~~~~~~ 264 (265)
..|.....+-+.|- ++||+|++|.
T Consensus 60 ~~GD~VlVe~~~yd~~~Kg~Iv~r~ 84 (102)
T 1jt8_A 60 REGDVVIVKPWEVQGDQKCDIIWRY 84 (102)
T ss_dssp CSCEEEEECCBCCTTSEEEEEEEES
T ss_pred cCCCEEEEEeccCCCCceEEEEEEe
Confidence 35777777888899 9999999996
No 12
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=26.30 E-value=90 Score=29.73 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHHHhHH
Q psy8862 145 FHFTTVLTLVSGTIFLM---WLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKL 198 (265)
Q Consensus 145 ~~~~~vl~L~aG~~~~~---wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~~~~~ 198 (265)
...+.-+.+ .|++++. -+.|... ++|+|+|++|+++++-...+++....++
T Consensus 420 ~~vi~rit~-~Ga~~L~~lavlp~~l~--~~ggGTslLI~VgV~~~~~~qi~~e~~~ 473 (490)
T 2ww9_A 420 NKVIPIAAV-TGASVLSLITVIGESLG--LKGKAAGIVVGIAGGFSLLEVITIEYQQ 473 (490)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHS--CCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444 4555555 3445543 3457999999999999888887655544
No 13
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.75 E-value=31 Score=27.58 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=19.2
Q ss_pred CCCccccCCCccccCCceeeeec
Q psy8862 242 PGDKVTVELTPYDLSRGRIIFRT 264 (265)
Q Consensus 242 ~g~~~~~~~~~y~~~~~~~~~~~ 264 (265)
.|.....+-+.|-++||+|++|.
T Consensus 72 ~GD~VlVe~~~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 72 TSDIILVGLRDYQDNKADVILKY 94 (143)
T ss_dssp TTCEEEEECSSSSSSCCEEEEEE
T ss_pred CCCEEEEeeccCCCCeEEEEEEe
Confidence 46666667788999999999996
No 14
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=23.24 E-value=1e+02 Score=29.30 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhhcCCcchHHHHHHHHhhhhHHHHH
Q psy8862 146 HFTTVLTLVSGTIFLM---WLSEQITEYGLGNGTSIIICSGIISSFPNILI 193 (265)
Q Consensus 146 ~~~~vl~L~aG~~~~~---wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~ 193 (265)
..+.-+.+ .|++++- -+.|... ++|+|+|++|+++++-++-+++.
T Consensus 415 ~vi~rit~-~Ga~~l~~lavlp~~l~--~~~gGTslLI~Vgv~~~~~e~i~ 462 (476)
T 2wwb_A 415 RYIPTAAA-FGGLCIGALSVLADFLG--AIGSGTGILLAVTIIYQYFEIFV 462 (476)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHC--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHH
Confidence 33444444 4555555 3344433 56789999999999998877764
No 15
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=22.17 E-value=1e+02 Score=28.85 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhhcCCcchHHHHHHHHhhhhHHHHHH
Q psy8862 148 TTVLTLVSGTIFLM---WLSEQITEYGLGNGTSIIICSGIISSFPNILIN 194 (265)
Q Consensus 148 ~~vl~L~aG~~~~~---wL~e~it~~GiGnG~SLiI~~gI~~~lp~~l~~ 194 (265)
+.-+.+ .|++++- -+.|... ++|+|+|++|+++++-...+++-+
T Consensus 374 i~rit~-~Ga~~l~~ia~lp~~l~--~~~gGTslLI~VgV~~~~~~qi~~ 420 (436)
T 1rh5_A 374 IPPLTV-MSSAFVGFLATIANFIG--ALGGGTGVLLTVSIVYRMYEQLLR 420 (436)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHH--HhcCchhhhhHHHHHHHHHHHHHH
Confidence 333343 4555555 3344443 345799999999999888777644
No 16
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.91 E-value=34 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.3
Q ss_pred CCCccccCCCccc-cCCceeeeec
Q psy8862 242 PGDKVTVELTPYD-LSRGRIIFRT 264 (265)
Q Consensus 242 ~g~~~~~~~~~y~-~~~~~~~~~~ 264 (265)
.|......-+.|- ++||+|++|.
T Consensus 56 ~GD~VlVe~~~yd~~~kg~Iv~r~ 79 (111)
T 2dgy_A 56 RGDFLIVDPIEEGEKVKAEISFVL 79 (111)
T ss_dssp SSCEEEEEECSSCSSCCEEEEEEC
T ss_pred CCCEEEEEecccCCcceEEEEEEe
Confidence 4666666667888 9999999996
Done!