Your job contains 1 sequence.
>psy8862
MRLNNILPNKDAKHYKKRLGRGIGSGSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFS
GGALSRLTIFSLGIMPYISSSIIMQLLSSIMPKFENLKKEGELGKYKIAQYIRFSTLILA
ILQGSGISLILKSQKNLVLDTSFYFHFTTVLTLVSGTIFLMWLSEQITEYGLGNGTSIII
CSGIISSFPNILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRMNYIRI
LPGDKVTVELTPYDLSRGRIIFRTK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8862
(265 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_0258 - symbol:CBU_0258 "preprotein transloca... 387 7.2e-36 1
UNIPROTKB|P0AGA2 - symbol:secY species:83333 "Escherichia... 378 6.5e-35 1
NCBI_NP|NP_354903.2 - symbol:prlA "preprotein translocase... 370 4.6e-34 1
TIGR_CMR|SO_0251 - symbol:SO_0251 "preprotein translocase... 363 2.5e-33 1
TIGR_CMR|CPS_0621 - symbol:CPS_0621 "preprotein transloca... 362 3.2e-33 1
UNIPROTKB|P78283 - symbol:secY "Protein translocase subun... 345 2.0e-31 1
TIGR_CMR|VC_2576 - symbol:VC_2576 "preprotein translocase... 345 2.0e-31 1
TIGR_CMR|GSU_2837 - symbol:GSU_2837 "preprotein transloca... 343 3.3e-31 1
TIGR_CMR|SPO_0506 - symbol:SPO_0506 "preprotein transloca... 334 3.0e-30 1
TIGR_CMR|CHY_2289 - symbol:CHY_2289 "preprotein transloca... 301 9.4e-27 1
TIGR_CMR|ECH_0428 - symbol:ECH_0428 "preprotein transloca... 297 2.5e-26 1
TIGR_CMR|APH_0299 - symbol:APH_0299 "preprotein transloca... 291 1.3e-25 1
TIGR_CMR|CJE_1856 - symbol:CJE_1856 "preprotein transloca... 282 1.1e-24 1
TIGR_CMR|BA_0130 - symbol:BA_0130 "preprotein translocase... 273 1.6e-23 1
TIGR_CMR|BA_2734 - symbol:BA_2734 "preprotein translocase... 272 2.2e-23 1
UNIPROTKB|P0A5Z2 - symbol:secY "Protein translocase subun... 261 4.2e-22 1
TIGR_CMR|DET_0494 - symbol:DET_0494 "preprotein transloca... 258 8.9e-22 1
TIGR_CMR|BA_0133 - symbol:BA_0133 "translation initiation... 239 3.5e-20 1
UNIPROTKB|P69222 - symbol:infA "protein chain initiation ... 233 1.5e-19 1
TIGR_CMR|CPS_2765 - symbol:CPS_2765 "translation initiati... 230 3.1e-19 1
TIGR_CMR|NSE_0285 - symbol:NSE_0285 "preprotein transloca... 235 3.2e-19 1
TIGR_CMR|SO_2625 - symbol:SO_2625 "translation initiation... 229 4.0e-19 1
UNIPROTKB|P65128 - symbol:infA "Translation initiation fa... 227 6.5e-19 1
TIGR_CMR|CHY_2286 - symbol:CHY_2286 "translation initiati... 227 6.5e-19 1
TIGR_CMR|VC_1737 - symbol:VC_1737 "initiation factor IF-1... 227 6.5e-19 1
TIGR_CMR|GSU_1750 - symbol:GSU_1750 "translation initiati... 224 1.4e-18 1
TIGR_CMR|CJE_1762 - symbol:CJE_1762 "translation initiati... 223 1.7e-18 1
TIGR_CMR|CBU_1195 - symbol:CBU_1195 "translation initiati... 221 2.8e-18 1
UNIPROTKB|P0A5H5 - symbol:infA "Translation initiation fa... 217 7.5e-18 1
TIGR_CMR|DET_0497 - symbol:DET_0497 "translation initiati... 209 5.3e-17 1
TAIR|locus:2054038 - symbol:SCY1 "AT2G18710" species:3702... 215 9.4e-17 1
TIGR_CMR|SPO_A0077 - symbol:SPO_A0077 "translation initia... 200 4.7e-16 1
TAIR|locus:2831681 - symbol:AT4G11175 species:3702 "Arabi... 185 1.8e-14 1
UNIPROTKB|P0C378 - symbol:infA "Translation initiation fa... 178 1.0e-13 1
UNIPROTKB|P0C379 - symbol:infA "Translation initiation fa... 178 1.0e-13 1
UNIPROTKB|P0C380 - symbol:infA "Translation initiation fa... 178 1.0e-13 1
UNIPROTKB|Q6END9 - symbol:infA "Translation initiation fa... 178 1.0e-13 1
UNIPROTKB|P25014 - symbol:secY "Protein translocase subun... 186 1.0e-13 1
TIGR_CMR|ECH_0511 - symbol:ECH_0511 "translation initiati... 116 7.2e-07 1
TIGR_CMR|NSE_0882 - symbol:NSE_0882 "translation initiati... 108 6.0e-06 1
TIGR_CMR|APH_0395 - symbol:APH_0395 "translation initiati... 102 2.9e-05 1
TAIR|locus:2065868 - symbol:SCY2 "SECY HOMOLOG 2" species... 115 0.00040 1
>TIGR_CMR|CBU_0258 [details] [associations]
symbol:CBU_0258 "preprotein translocase, SecY subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0005887 "integral to
plasma membrane" evidence=ISS] [GO:0015450
"P-P-bond-hydrolysis-driven protein transmembrane transporter
activity" evidence=ISS] [GO:0015627 "type II protein secretion
system complex" evidence=ISS] [GO:0015628 "protein secretion by the
type II secretion system" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:NP_819302.1 ProteinModelPortal:Q83EQ6 GeneID:1208139
KEGG:cbu:CBU_0258 PATRIC:17929209
BioCyc:CBUR227377:GJ7S-264-MONOMER Uniprot:Q83EQ6
Length = 442
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 75/162 (46%), Positives = 106/162 (65%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
GA+IP+P ++ S+L LF +++ LGMFNMFSGGALSR+TIF+LG+MPY
Sbjct: 35 GAYIPVPGLDPSRLAALFHQHETGFLGMFNMFSGGALSRMTIFALGVMPYISSSIIVQMY 94
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHF 147
PK + L+KEGE G+ KI QY R+ T+IL++LQ + ++ L S V++ + F+F
Sbjct: 95 SQISPKMQALRKEGEAGRRKINQYTRYGTVILSLLQSAFMTKWLVSS-GTVINPNLGFYF 153
Query: 148 TTVLTLVSGTIFLMWLSEQITEYGLGNGTXXXXXXXXXXXFP 189
T ++TLV+GT+FLMWL EQ+TE G+GNG FP
Sbjct: 154 TAIVTLVTGTMFLMWLGEQMTERGVGNGISLIIFASIASRFP 195
>UNIPROTKB|P0AGA2 [details] [associations]
symbol:secY species:83333 "Escherichia coli K-12"
[GO:0043952 "protein transport by the Sec complex" evidence=IMP]
[GO:0065002 "intracellular protein transmembrane transport"
evidence=IMP] [GO:0006886 "intracellular protein transport"
evidence=IMP] [GO:0016021 "integral to membrane" evidence=IEA;IDA]
[GO:0005886 "plasma membrane" evidence=IEA;IDA] [GO:0005622
"intracellular" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 EMBL:X01563
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:U18997 GO:GO:0005622 GO:GO:0065002 TCDB:3.A.5.1.1 PDB:3J01
PDBsum:3J01 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 PDB:2AKH PDB:2AKI
PDBsum:2AKH PDBsum:2AKI PIR:A04473 RefSeq:NP_417759.1
RefSeq:YP_492132.1 ProteinModelPortal:P0AGA2 SMR:P0AGA2
DIP:DIP-59302N IntAct:P0AGA2 PRIDE:P0AGA2
EnsemblBacteria:EBESCT00000000476 EnsemblBacteria:EBESCT00000018444
GeneID:12934410 GeneID:947799 KEGG:ecj:Y75_p3876 KEGG:eco:b3300
PATRIC:32122032 EchoBASE:EB0759 EcoGene:EG10766 KO:K03076
ProtClustDB:PRK09204 BioCyc:EcoCyc:SECY
BioCyc:ECOL316407:JW3262-MONOMER EvolutionaryTrace:P0AGA2
Genevestigator:P0AGA2 Uniprot:P0AGA2
Length = 443
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 77/151 (50%), Positives = 101/151 (66%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G+ IPIP I+ + L KL E+ + I+ MFNMFSGGALSR +IF+LGIMPY
Sbjct: 36 GSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLL 95
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQ---KNLVLDTSFY 144
P +KKEGE G+ KI+QY R+ TL+LAI Q GI+ L + + LV++ F
Sbjct: 96 TVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFA 155
Query: 145 FHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
F+FT V++LV+GT+FLMWL EQITE G+GNG
Sbjct: 156 FYFTAVVSLVTGTMFLMWLGEQITERGIGNG 186
>NCBI_NP|NP_354903.2 [details] [associations]
symbol:prlA "preprotein translocase subunit SecY"
species:176299 "Agrobacterium fabrum str. C58" [GO:0015627 "type II
protein secretion system complex" evidence=ISS] [GO:0015628
"protein secretion by the type II secretion system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_354903
Length = 446
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 71/148 (47%), Positives = 93/148 (62%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G HIP+P +N + F N ILG+FNMF+GGA+ R+ IF+LGIMPY
Sbjct: 40 GTHIPLPGLNPEAYAQAFRGQANGILGLFNMFAGGAVERMAIFALGIMPYISASIIVQLM 99
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHF 147
P E LKKEGE G+ I QY R+ T++L LQ GI++ L+S LV+D +F
Sbjct: 100 TSVVPSLEALKKEGEAGRKIINQYTRYGTVLLGTLQAYGIAVGLESGNGLVVDPGMFFRV 159
Query: 148 TTVLTLVSGTIFLMWLSEQITEYGLGNG 175
+TV+TL+ GT+FLMWL EQIT G+GNG
Sbjct: 160 STVITLLGGTMFLMWLGEQITSRGIGNG 187
>TIGR_CMR|SO_0251 [details] [associations]
symbol:SO_0251 "preprotein translocase, SecY subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:NP_715891.1 ProteinModelPortal:Q8EK50 GeneID:1168134
KEGG:son:SO_0251 PATRIC:23520195 Uniprot:Q8EK50
Length = 446
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 74/150 (49%), Positives = 97/150 (64%)
Query: 27 SGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXX 86
+G+ +PIP I+ + L +LF + ILGMFNMFSGGAL R +IF+LGIMPY
Sbjct: 34 AGSFVPIPGIDAAVLAELFAQQSGTILGMFNMFSGGALERASIFALGIMPYISASIIMQL 93
Query: 87 XXXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQ-KNLVLDTSFYF 145
P LKKEGE G+ KI+QY R+ TL+L Q GI+ L + LV++ F F
Sbjct: 94 LTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSVGIATGLPNLVPGLVVNIGFGF 153
Query: 146 HFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
+F V++LV+GT+FLMWL EQITE G+GNG
Sbjct: 154 YFVAVVSLVTGTMFLMWLGEQITERGIGNG 183
>TIGR_CMR|CPS_0621 [details] [associations]
symbol:CPS_0621 "preprotein translocase, SecY subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] [GO:0016020 "membrane" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0065002 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 RefSeq:YP_267371.1
ProteinModelPortal:Q488Z3 STRING:Q488Z3 GeneID:3521449
KEGG:cps:CPS_0621 PATRIC:21464569
BioCyc:CPSY167879:GI48-708-MONOMER Uniprot:Q488Z3
Length = 445
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 70/149 (46%), Positives = 98/149 (65%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G+ +PIP I+ + L + FE+ + I+ MFNMFSGGAL R ++ +LGIMPY
Sbjct: 38 GSFVPIPGIDAAVLAQFFEQQKGTIVEMFNMFSGGALERASVLALGIMPYISASIIMQLL 97
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLIL-KSQKNLVLDTSFYFH 146
P LKKEGE G+ KI+QY R+ TL+LA +Q I+ L + + LV++ F F+
Sbjct: 98 TVVHPAMAELKKEGEAGRRKISQYTRYGTLVLATVQSIAIARSLPEMMQGLVINAGFSFY 157
Query: 147 FTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
FT V++L++GT+FLMWL EQITE G+GNG
Sbjct: 158 FTAVISLITGTMFLMWLGEQITERGIGNG 186
>UNIPROTKB|P78283 [details] [associations]
symbol:secY "Protein translocase subunit SecY"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009306 "protein secretion" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009306 EMBL:Y08367
EMBL:Y07817 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593
KO:K03076 ProtClustDB:PRK09204 PIR:B82057 RefSeq:NP_232204.1
ProteinModelPortal:P78283 DNASU:2615593 GeneID:2615593
KEGG:vch:VC2576 PATRIC:20084178 Uniprot:P78283
Length = 444
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 72/151 (47%), Positives = 97/151 (64%)
Query: 27 SGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXX 86
+G+ +PIP I+ + L +LFE+ + I+ MFNMFSGGAL R +I +LGIMPY
Sbjct: 35 AGSFVPIPGIDAAVLAELFEQQKGTIVEMFNMFSGGALERASILALGIMPYISASIVVQL 94
Query: 87 XXXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN--LVLDTSFY 144
P LKKEGE G+ KI+QY R+ TL+LA Q GI+ L + N +V+D + +
Sbjct: 95 LTVVHPALAELKKEGEAGRRKISQYTRYGTLVLATFQAIGIATGLPNMVNNLVVIDQTMF 154
Query: 145 FHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
TV +LV+GT+FLMWL EQITE G+GNG
Sbjct: 155 TLIATV-SLVTGTMFLMWLGEQITERGIGNG 184
>TIGR_CMR|VC_2576 [details] [associations]
symbol:VC_2576 "preprotein translocase, SecY subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009306 EMBL:Y08367 EMBL:Y07817
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593
KO:K03076 ProtClustDB:PRK09204 PIR:B82057 RefSeq:NP_232204.1
ProteinModelPortal:P78283 DNASU:2615593 GeneID:2615593
KEGG:vch:VC2576 PATRIC:20084178 Uniprot:P78283
Length = 444
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 72/151 (47%), Positives = 97/151 (64%)
Query: 27 SGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXX 86
+G+ +PIP I+ + L +LFE+ + I+ MFNMFSGGAL R +I +LGIMPY
Sbjct: 35 AGSFVPIPGIDAAVLAELFEQQKGTIVEMFNMFSGGALERASILALGIMPYISASIVVQL 94
Query: 87 XXXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN--LVLDTSFY 144
P LKKEGE G+ KI+QY R+ TL+LA Q GI+ L + N +V+D + +
Sbjct: 95 LTVVHPALAELKKEGEAGRRKISQYTRYGTLVLATFQAIGIATGLPNMVNNLVVIDQTMF 154
Query: 145 FHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
TV +LV+GT+FLMWL EQITE G+GNG
Sbjct: 155 TLIATV-SLVTGTMFLMWLGEQITERGIGNG 184
>TIGR_CMR|GSU_2837 [details] [associations]
symbol:GSU_2837 "preprotein translocase, SecY subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0065002 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
HOGENOM:HOG000080586 RefSeq:NP_953880.1 ProteinModelPortal:Q749A7
GeneID:2688725 KEGG:gsu:GSU2837 PATRIC:22028521
BioCyc:GSUL243231:GH27-2796-MONOMER Uniprot:Q749A7
Length = 435
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 67/153 (43%), Positives = 96/153 (62%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G HIP P I+ + L F + + +LG+F+MFSGGAL +LT+F+LGIMPY
Sbjct: 31 GCHIPTPGIDSNALAHFFAQARGTLLGLFDMFSGGALEKLTVFALGIMPYISSSIIFQLL 90
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN-----LVLDTS 142
P E L KEGE G+ KI QY R+ T++L+++Q GIS+ L+S + +V +
Sbjct: 91 TVVVPSIEKLSKEGESGRKKIIQYTRYGTIVLSVVQALGISIGLESMRGPAGELVVPNPG 150
Query: 143 FYFHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
+ F TV+TL +GT F+MWL EQ++E G+GNG
Sbjct: 151 WGFRLMTVITLTAGTAFIMWLGEQMSEKGIGNG 183
>TIGR_CMR|SPO_0506 [details] [associations]
symbol:SPO_0506 "preprotein translocase, SecY subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0005622 GO:GO:0065002 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_165768.1 ProteinModelPortal:Q5LW37
GeneID:3194103 KEGG:sil:SPO0506 PATRIC:23374275 Uniprot:Q5LW37
Length = 455
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 69/148 (46%), Positives = 90/148 (60%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G IP+P I+ L + E+ I GM +MF+GGAL R+ IF+LGIMPY
Sbjct: 40 GTFIPVPGIDGVALREFMEQAGQGIGGMVSMFTGGALGRMGIFALGIMPYISASIIVQLL 99
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHF 147
P E LKKEGE G+ KI QY R T+ LA +Q G+++ L+S +L + YF F
Sbjct: 100 TAMVPSLEQLKKEGEQGRKKINQYTRLGTVALATVQAYGLAVSLESG-DLATEPGMYFRF 158
Query: 148 TTVLTLVSGTIFLMWLSEQITEYGLGNG 175
T++TLV GT+FLMWL EQIT G+GNG
Sbjct: 159 ATMITLVGGTMFLMWLGEQITARGIGNG 186
>TIGR_CMR|CHY_2289 [details] [associations]
symbol:CHY_2289 "preprotein translocase, SecY subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006886 "intracellular protein transport" evidence=ISS]
[GO:0008565 "protein transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0065002 eggNOG:COG0201 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
HOGENOM:HOG000080586 RefSeq:YP_361098.1 ProteinModelPortal:Q3A9T6
STRING:Q3A9T6 GeneID:3727431 KEGG:chy:CHY_2289 PATRIC:21277649
BioCyc:CHYD246194:GJCN-2288-MONOMER Uniprot:Q3A9T6
Length = 419
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 62/148 (41%), Positives = 87/148 (58%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
GAHIP+P IN +++ +L + ILG F++ SGGA + TIF++ I PY
Sbjct: 31 GAHIPVPGINLARMEELIQSG--TILGFFDVISGGAFKKFTIFAMSITPYINASIIMQLL 88
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHF 147
P E L KEGE G+ KI +Y+R+ T+ILA +QG +++ L+S N + +
Sbjct: 89 TVVIPYLEKLAKEGEEGRRKITEYVRYGTVILAFIQGFFMAIGLRSALN---NPGILTYL 145
Query: 148 TTVLTLVSGTIFLMWLSEQITEYGLGNG 175
L L +GT FLMWL EQITE G+GNG
Sbjct: 146 YVALALTAGTAFLMWLGEQITEKGIGNG 173
>TIGR_CMR|ECH_0428 [details] [associations]
symbol:ECH_0428 "preprotein translocase, SecY subunit"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0005622 GO:GO:0065002
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_507246.1 ProteinModelPortal:Q2GH37
STRING:Q2GH37 GeneID:3927650 KEGG:ech:ECH_0428 PATRIC:20576333
BioCyc:ECHA205920:GJNR-429-MONOMER Uniprot:Q2GH37
Length = 432
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 58/152 (38%), Positives = 88/152 (57%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G +IPIP IN + + K+ +LG+FN+FSGGAL R+T+F+L +MPY
Sbjct: 28 GTYIPIPGINPDVIDAVVTKHSVGVLGIFNVFSGGALGRMTVFALNVMPYIVSSIIIQLL 87
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN----LVLDTSF 143
PK L++ GELG+ KI YIR+ T+ ++QG I L L+ +V++
Sbjct: 88 SVTIPKLNELRQNGELGRIKINSYIRYMTIFFCMVQGFVILLGLEKMNTETSIVVIEPGL 147
Query: 144 YFHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
F + +L+ GT+FL+WL E+I + G+GNG
Sbjct: 148 LFRIVGISSLLGGTMFLLWLGERINKNGIGNG 179
>TIGR_CMR|APH_0299 [details] [associations]
symbol:APH_0299 "preprotein translocase, SecY subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005887 "integral
to plasma membrane" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven protein
transmembrane transporter activity" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0006605 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0065002 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_504911.1 ProteinModelPortal:Q2GL40
STRING:Q2GL40 GeneID:3930869 KEGG:aph:APH_0299 PATRIC:20949172
BioCyc:APHA212042:GHPM-329-MONOMER Uniprot:Q2GL40
Length = 434
Score = 291 (107.5 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 58/152 (38%), Positives = 88/152 (57%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G +IPIP IN + ++ + +LG+FN+FSGGAL R+TIF+L +MPY
Sbjct: 29 GTYIPIPGINLGVIGEIVSGHTTGVLGIFNVFSGGALGRMTIFALNVMPYIVSSIMVQLL 88
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN----LVLDTSF 143
P +++EGELG+ KI Y R+ T++ I+QG I L L+ +VLD
Sbjct: 89 SVAVPALNEMRQEGELGRAKINSYTRYLTVVFCIVQGLMILLGLERMNTAEVMVVLDPGL 148
Query: 144 YFHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
F + ++++GT+FL+WL E+I G+GNG
Sbjct: 149 TFRVVGISSMLAGTMFLLWLGERINLKGIGNG 180
>TIGR_CMR|CJE_1856 [details] [associations]
symbol:CJE_1856 "preprotein translocase, SecY subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0016020 "membrane"
evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0005886 GO:GO:0006605 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0065002
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
PIR:D81266 RefSeq:YP_179826.1 ProteinModelPortal:Q5HSA9
STRING:Q5HSA9 GeneID:3232483 KEGG:cjr:CJE1856 PATRIC:20045544
OMA:HIIKIVL BioCyc:CJEJ195099:GJC0-1895-MONOMER Uniprot:Q5HSA9
Length = 421
Score = 282 (104.3 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 56/154 (36%), Positives = 89/154 (57%)
Query: 29 AHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXXX 88
A++P+P +N + + F NQNN LG+FN+FSGGA R +I SLGIMPY
Sbjct: 23 AYVPVPGVNADVIAEFFNNNQNNALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLA 82
Query: 89 XXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN-------LVLDT 141
P +KKE + K Q IR++T+++ ++Q G+++ L+S +V D
Sbjct: 83 ATFPNIGKMKKERD-SMQKYMQIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDL 141
Query: 142 SFYFHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
+ + + ++++GT+ LMWL EQIT+ G+GNG
Sbjct: 142 NMFIALCAI-SMLAGTMLLMWLGEQITQRGIGNG 174
>TIGR_CMR|BA_0130 [details] [associations]
symbol:BA_0130 "preprotein translocase, SecY subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952
KO:K03076 ProtClustDB:PRK09204 HOGENOM:HOG000080586
RefSeq:NP_842698.1 RefSeq:YP_016735.2 RefSeq:YP_026416.1
ProteinModelPortal:Q81VR0 IntAct:Q81VR0 DNASU:1086476
EnsemblBacteria:EBBACT00000012418 EnsemblBacteria:EBBACT00000015283
EnsemblBacteria:EBBACT00000022223 GeneID:1086476 GeneID:2818223
GeneID:2850579 KEGG:ban:BA_0130 KEGG:bar:GBAA_0130 KEGG:bat:BAS0130
BioCyc:BANT260799:GJAJ-141-MONOMER
BioCyc:BANT261594:GJ7F-143-MONOMER Uniprot:Q81VR0
Length = 433
Score = 273 (101.2 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 63/153 (41%), Positives = 86/153 (56%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G IP+P N L ++Q N LG+ N F GGAL +IF++GIMPY
Sbjct: 31 GTFIPVPFTNGDVLKA---QDQLNALGILNTFGGGALKNFSIFAMGIMPYITASIIVQLL 87
Query: 88 XXXX-PKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN--LVLDT--S 142
PKF K+GE+G+ K+ Q+ R+ T++LA +QG G+S+ L+L+ S
Sbjct: 88 QMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMSIGFNGMVGGQLILNPGWS 147
Query: 143 FYFHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
Y + TVLT +GT FLMWL EQIT G+GNG
Sbjct: 148 TYLYIATVLT--AGTAFLMWLGEQITAKGVGNG 178
>TIGR_CMR|BA_2734 [details] [associations]
symbol:BA_2734 "preprotein translocase, SecY subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0006605 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 InterPro:IPR026593 GO:GO:0043952 KO:K03076
HOGENOM:HOG000080586 OMA:HIIKIVL RefSeq:NP_845084.1
RefSeq:YP_019374.1 RefSeq:YP_028807.1 ProteinModelPortal:Q81PR7
IntAct:Q81PR7 DNASU:1087864 EnsemblBacteria:EBBACT00000009684
EnsemblBacteria:EBBACT00000013719 EnsemblBacteria:EBBACT00000019913
GeneID:1087864 GeneID:2816407 GeneID:2848183 KEGG:ban:BA_2734
KEGG:bar:GBAA_2734 KEGG:bat:BAS2547 ProtClustDB:PRK12907
BioCyc:BANT260799:GJAJ-2612-MONOMER
BioCyc:BANT261594:GJ7F-2705-MONOMER Uniprot:Q81PR7
Length = 434
Score = 272 (100.8 bits), Expect = 2.2e-23, P = 2.2e-23
Identities = 63/153 (41%), Positives = 89/153 (58%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G IP+P N +++ K+ ++Q N+LGM N+F GGAL +IF++GI PY
Sbjct: 31 GTFIPVPHTN-AEVLKI--QDQANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQLL 87
Query: 88 XXXX-PKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKN--LVLDTSF- 143
PKF K+GE+G+ K AQ+ R+ T+ILA +Q G+S + L+ D S+
Sbjct: 88 QMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWT 147
Query: 144 -YFHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
Y TVLT +GT FL+WL EQIT G+GNG
Sbjct: 148 TYLFIATVLT--AGTAFLLWLGEQITANGVGNG 178
>UNIPROTKB|P0A5Z2 [details] [associations]
symbol:secY "Protein translocase subunit SecY" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=TAS]
[GO:0040007 "growth" evidence=IMP] [GO:0051701 "interaction with
host" evidence=TAS] [GO:0052059 "evasion or tolerance by symbiont
of host-produced reactive oxygen species" evidence=TAS] [GO:0052572
"response to host immune response" evidence=TAS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0040007 Reactome:REACT_116125 GO:GO:0005576 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0015031
EMBL:BX842574 GO:GO:0052059 TCDB:3.A.5.2.2 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593 KO:K03076
ProtClustDB:PRK09204 PIR:G70822 RefSeq:NP_215246.1
RefSeq:NP_335176.1 RefSeq:YP_006514076.1 ProteinModelPortal:P0A5Z2
SMR:P0A5Z2 PRIDE:P0A5Z2 EnsemblBacteria:EBMYCT00000001582
EnsemblBacteria:EBMYCT00000069300 GeneID:13318622 GeneID:888559
GeneID:926050 KEGG:mtc:MT0756.1 KEGG:mtu:Rv0732 KEGG:mtv:RVBD_0732
PATRIC:18123397 TubercuList:Rv0732 HOGENOM:HOG000080586
Uniprot:P0A5Z2
Length = 441
Score = 261 (96.9 bits), Expect = 4.2e-22, P = 4.2e-22
Identities = 54/159 (33%), Positives = 85/159 (53%)
Query: 28 GAHIPIPSINYSQLTKLFEK----NQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXX 83
GA +P P +N+ + + ++ I + N+FSGGAL +LT+F++G+MPY
Sbjct: 31 GAALPSPGVNFPNVQQCIKEASAGEAGQIYSLINLFSGGALLKLTVFAVGVMPYITASII 90
Query: 84 XXXXXXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGI-------SLILKSQKN 136
P+FE L+KEG+ G+ K+ QY R+ + LAILQ + I L+ +
Sbjct: 91 VQLLTVVIPRFEELRKEGQAGQSKMTQYTRYLAIALAILQATSIVALAANGGLLQGCSLD 150
Query: 137 LVLDTSFYFHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
++ D S + VL + G +MW+ E ITE G+GNG
Sbjct: 151 IIADQSIFTLVVIVLVMTGGAALVMWMGELITERGIGNG 189
>TIGR_CMR|DET_0494 [details] [associations]
symbol:DET_0494 "preprotein translocase, SecY subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0016020 "membrane"
evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0065002 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:YP_181238.1 ProteinModelPortal:Q3Z961 STRING:Q3Z961
GeneID:3230236 KEGG:det:DET0494 PATRIC:21608057
BioCyc:DETH243164:GJNF-494-MONOMER Uniprot:Q3Z961
Length = 438
Score = 258 (95.9 bits), Expect = 8.9e-22, P = 8.9e-22
Identities = 55/147 (37%), Positives = 81/147 (55%)
Query: 29 AHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXXX 88
AH+P+P ++ + L LF+ QN LGM ++FSGGA+ ++ +LG+ PY
Sbjct: 41 AHVPLPGVDSAALQDLFD--QNGALGMLDLFSGGAMRYFSVAALGVYPYITASIIMTLLT 98
Query: 89 XXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHFT 148
PK L KEGE G+ KI + + A L G L+L ++ V T
Sbjct: 99 PVIPKLTALSKEGEAGRNKINTITHWLAVPTAALAGYS-QLLLLQREGAVAQTEPLAAVA 157
Query: 149 TVLTLVSGTIFLMWLSEQITEYGLGNG 175
VL++V+GT+F++WL EQIT YG+GNG
Sbjct: 158 IVLSIVAGTMFMVWLGEQITNYGIGNG 184
>TIGR_CMR|BA_0133 [details] [associations]
symbol:BA_0133 "translation initiation factor IF-1"
species:198094 "Bacillus anthracis str. Ames" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
eggNOG:COG0361 KO:K02518 TIGRFAMs:TIGR00008 HOGENOM:HOG000221323
RefSeq:NP_842701.1 RefSeq:YP_016738.1 RefSeq:YP_026419.1
ProteinModelPortal:Q81VQ7 SMR:Q81VQ7 DNASU:1087039
EnsemblBacteria:EBBACT00000010278 EnsemblBacteria:EBBACT00000015913
EnsemblBacteria:EBBACT00000021472 GeneID:1087039 GeneID:2818237
GeneID:2853052 KEGG:ban:BA_0133 KEGG:bar:GBAA_0133 KEGG:bat:BAS0133
OMA:MRMNYIK ProtClustDB:PRK00276 BioCyc:BANT260799:GJAJ-144-MONOMER
BioCyc:BANT261594:GJ7F-146-MONOMER Uniprot:Q81VQ7
Length = 72
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 44/58 (75%), Positives = 52/58 (89%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPNA FKV+LEN HV+L H+SGK+RMN+IRILPGDKVTVEL+PYDL+RGRI +R K
Sbjct: 15 ETLPNAMFKVELENGHVVLAHVSGKIRMNFIRILPGDKVTVELSPYDLNRGRITYRFK 72
>UNIPROTKB|P69222 [details] [associations]
symbol:infA "protein chain initiation factor IF-1"
species:83333 "Escherichia coli K-12" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0043022
"ribosome binding" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
HAMAP:MF_00075 InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176
PROSITE:PS50832 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0005840 GO:GO:0043022 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:L10383 EMBL:M63145
eggNOG:COG0361 KO:K02518 TIGRFAMs:TIGR00008 HOGENOM:HOG000221323
OMA:KEDSIEM ProtClustDB:PRK00276 EMBL:Y00373 PIR:A27855
RefSeq:NP_415404.1 RefSeq:YP_489156.1 PDB:1AH9 PDB:1ZO1 PDBsum:1AH9
PDBsum:1ZO1 ProteinModelPortal:P69222 SMR:P69222 DIP:DIP-48250N
IntAct:P69222 PhosSite:P010441 PaxDb:P69222 PRIDE:P69222
EnsemblBacteria:EBESCT00000004907 EnsemblBacteria:EBESCT00000004908
EnsemblBacteria:EBESCT00000014525 GeneID:12933053 GeneID:945500
KEGG:ecj:Y75_p0856 KEGG:eco:b0884 PATRIC:32116977 EchoBASE:EB0499
EcoGene:EG10504 BioCyc:EcoCyc:EG10504-MONOMER
BioCyc:ECOL316407:JW0867-MONOMER EvolutionaryTrace:P69222
Genevestigator:P69222 Uniprot:P69222
Length = 72
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 43/58 (74%), Positives = 50/58 (86%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPN F+V+LEN HV+ HISGKMR NYIRIL GDKVTVELTPYDLS+GRI+FR++
Sbjct: 15 ETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 72
>TIGR_CMR|CPS_2765 [details] [associations]
symbol:CPS_2765 "translation initiation factor IF-1"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:KEDSIEM
ProtClustDB:PRK00276 RefSeq:YP_269477.1 ProteinModelPortal:Q480P2
SMR:Q480P2 STRING:Q480P2 PRIDE:Q480P2 GeneID:3522367
KEGG:cps:CPS_2765 PATRIC:21468569
BioCyc:CPSY167879:GI48-2826-MONOMER Uniprot:Q480P2
Length = 72
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 43/58 (74%), Positives = 49/58 (84%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
+ LPN F+V+LEN HV+ HISGKMR NYIRIL GDKVTVELTPYDLS+GRIIFR +
Sbjct: 15 DTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIIFRAR 72
>TIGR_CMR|NSE_0285 [details] [associations]
symbol:NSE_0285 "preprotein translocase, SecY subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0005886 GO:GO:0006605 GO:GO:0005622
GO:GO:0065002 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
RefSeq:YP_506176.1 ProteinModelPortal:Q2GEC0 STRING:Q2GEC0
GeneID:3932107 KEGG:nse:NSE_0285 PATRIC:22680663
ProtClustDB:CLSK2527980 BioCyc:NSEN222891:GHFU-312-MONOMER
Uniprot:Q2GEC0
Length = 436
Score = 235 (87.8 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 59/157 (37%), Positives = 86/157 (54%)
Query: 28 GAHIPIPSINYSQLTKLFEKN-QNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXX 86
G I +PS+N + ++++F N + I+GMFN FSGGAL R+T+F+L +MPY
Sbjct: 32 GTFITLPSVNPAHVSEIFSANLSSGIIGMFNTFSGGALGRMTLFALNVMPYIVSSIVVQI 91
Query: 87 XXXXXPKFENLKKEGE-----LGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVL-D 140
F LK EG+ + + +++ Y + L LA QG I L+ K V +
Sbjct: 92 F------FSMLKSEGKVSAEFMNESRLSFYSKLVALFLAFFQGFIIVAGLERTKAFVGGN 145
Query: 141 TSFY--FHFTTVLTLVSGTIFLMWLSEQITEYGLGNG 175
FY +T+VLTLV GT L+WL +QI G+GNG
Sbjct: 146 EEFYSLLKYTSVLTLVCGTFSLIWLGQQINSRGIGNG 182
>TIGR_CMR|SO_2625 [details] [associations]
symbol:SO_2625 "translation initiation factor IF-1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:KEDSIEM
ProtClustDB:PRK00276 RefSeq:NP_718210.1 ProteinModelPortal:Q8EDW6
SMR:Q8EDW6 GeneID:1170327 KEGG:son:SO_2625 PATRIC:23524877
Uniprot:Q8EDW6
Length = 72
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPN F+V+LEN HV++ HISGKMR NYIRIL GDKVTV+LTPYDL++GRI+FR +
Sbjct: 15 ETLPNTMFRVELENGHVVIAHISGKMRKNYIRILTGDKVTVQLTPYDLTKGRIVFRAR 72
>UNIPROTKB|P65128 [details] [associations]
symbol:infA "Translation initiation factor IF-1"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 OMA:KEDSIEM ProtClustDB:PRK00276 PIR:A82164
RefSeq:NP_231373.1 ProteinModelPortal:P65128 SMR:P65128
DNASU:2613742 GeneID:2613742 KEGG:vch:VC1737 PATRIC:20082528
Uniprot:P65128
Length = 72
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
+ LPN F+V+LEN HV+ HISGKMR NYIRIL GDKVTVE+TPYDLS+GRI+FR +
Sbjct: 15 DTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEMTPYDLSKGRIVFRAR 72
>TIGR_CMR|CHY_2286 [details] [associations]
symbol:CHY_2286 "translation initiation factor IF-1"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:MRMNYIK
RefSeq:YP_361095.1 ProteinModelPortal:Q3A9T9 SMR:Q3A9T9
STRING:Q3A9T9 GeneID:3726810 KEGG:chy:CHY_2286 PATRIC:21277643
BioCyc:CHYD246194:GJCN-2285-MONOMER Uniprot:Q3A9T9
Length = 72
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 41/58 (70%), Positives = 52/58 (89%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPNA F+V+L+N H +L H+SGK+RMN+IRILPGD+VTVEL+PYDL+RGRII+R K
Sbjct: 15 EPLPNAMFRVELDNGHKVLAHVSGKIRMNFIRILPGDRVTVELSPYDLTRGRIIYRHK 72
>TIGR_CMR|VC_1737 [details] [associations]
symbol:VC_1737 "initiation factor IF-1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] HAMAP:MF_00075 InterPro:IPR004368
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 OMA:KEDSIEM ProtClustDB:PRK00276 PIR:A82164
RefSeq:NP_231373.1 ProteinModelPortal:P65128 SMR:P65128
DNASU:2613742 GeneID:2613742 KEGG:vch:VC1737 PATRIC:20082528
Uniprot:P65128
Length = 72
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
+ LPN F+V+LEN HV+ HISGKMR NYIRIL GDKVTVE+TPYDLS+GRI+FR +
Sbjct: 15 DTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEMTPYDLSKGRIVFRAR 72
>TIGR_CMR|GSU_1750 [details] [associations]
symbol:GSU_1750 "translation initiation factor IF-1"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:KEDSIEM
ProtClustDB:PRK00276 RefSeq:NP_952800.1 ProteinModelPortal:P61688
SMR:P61688 GeneID:2685288 KEGG:gsu:GSU1750 PATRIC:22026347
BioCyc:GSUL243231:GH27-1719-MONOMER Uniprot:P61688
Length = 72
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPNA F+V+LEN HV+L HISGKMR +I+ILPGDKVTVEL+PYDL+RGRI +R K
Sbjct: 15 EPLPNAMFRVELENGHVVLAHISGKMRKYFIKILPGDKVTVELSPYDLTRGRITYRAK 72
>TIGR_CMR|CJE_1762 [details] [associations]
symbol:CJE_1762 "translation initiation factor IF-1"
species:195099 "Campylobacter jejuni RM1221" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:MRMNYIK
ProtClustDB:PRK00276 RefSeq:YP_179734.1 ProteinModelPortal:Q5HSK1
SMR:Q5HSK1 STRING:Q5HSK1 GeneID:3232389 KEGG:cjr:CJE1762
PATRIC:20045334 BioCyc:CJEJ195099:GJC0-1792-MONOMER Uniprot:Q5HSK1
Length = 72
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 43/58 (74%), Positives = 49/58 (84%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPNA FKV+L+N HVIL HI+GKMRM+YIRI+PGDKV VELTPY L +GRI FR K
Sbjct: 15 EALPNANFKVELDNKHVILCHIAGKMRMHYIRIMPGDKVKVELTPYSLDKGRITFRYK 72
>TIGR_CMR|CBU_1195 [details] [associations]
symbol:CBU_1195 "translation initiation factor IF-1"
species:227377 "Coxiella burnetii RSA 493" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:KEDSIEM
ProtClustDB:PRK00276 RefSeq:NP_820190.1 ProteinModelPortal:Q83CD1
SMR:Q83CD1 PRIDE:Q83CD1 GeneID:1209099 KEGG:cbu:CBU_1195
PATRIC:17931133 BioCyc:CBUR227377:GJ7S-1183-MONOMER Uniprot:Q83CD1
Length = 83
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 40/56 (71%), Positives = 49/56 (87%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
++LPN TF+VKLEN HV+ HISG+MR +YIRIL GD VTVELTPYDL+RGRI++R
Sbjct: 15 DSLPNTTFRVKLENGHVVTAHISGRMRKHYIRILTGDAVTVELTPYDLTRGRIVYR 70
>UNIPROTKB|P0A5H5 [details] [associations]
symbol:infA "Translation initiation factor IF-1"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005886 GO:GO:0005737 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842583 GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361
KO:K02518 TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:MRMNYIK
ProtClustDB:PRK00276 PIR:C70566 RefSeq:NP_217979.1
RefSeq:NP_338094.1 RefSeq:YP_006516951.1 PDB:3I4O PDBsum:3I4O
ProteinModelPortal:P0A5H5 SMR:P0A5H5 PRIDE:P0A5H5
EnsemblBacteria:EBMYCT00000001619 EnsemblBacteria:EBMYCT00000069334
GeneID:13317069 GeneID:887325 GeneID:926629 KEGG:mtc:MT3568
KEGG:mtu:Rv3462c KEGG:mtv:RVBD_3462c PATRIC:18129575
TubercuList:Rv3462c EvolutionaryTrace:P0A5H5 Uniprot:P0A5H5
Length = 73
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPNA F+++LEN H +L HISGKMR +YIRILP D+V VEL+PYDLSRGRI++R K
Sbjct: 16 EPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK 73
>TIGR_CMR|DET_0497 [details] [associations]
symbol:DET_0497 "translation initiation factor IF-1"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:KEDSIEM
ProtClustDB:PRK00276 RefSeq:YP_181241.1 ProteinModelPortal:Q3Z958
SMR:Q3Z958 STRING:Q3Z958 GeneID:3230225 KEGG:det:DET0497
PATRIC:21608063 BioCyc:DETH243164:GJNF-497-MONOMER Uniprot:Q3Z958
Length = 73
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 38/58 (65%), Positives = 49/58 (84%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LP+A F+V+L N H +L HISGKMR++YIRILPGD+V VEL+PYDL+RGR+ +R K
Sbjct: 15 EALPSAAFRVQLSNGHEVLAHISGKMRVHYIRILPGDRVLVELSPYDLTRGRVTYRFK 72
>TAIR|locus:2054038 [details] [associations]
symbol:SCY1 "AT2G18710" species:3702 "Arabidopsis
thaliana" [GO:0009306 "protein secretion" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0015450 "P-P-bond-hydrolysis-driven protein
transmembrane transporter activity" evidence=IEA;ISS] [GO:0016020
"membrane" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010027 "thylakoid membrane organization"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] InterPro:IPR002208 Pfam:PF00344 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0009507
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0015031 GO:GO:0010027
GO:GO:0009535 EMBL:AC005724 eggNOG:COG0201 KO:K10956
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 EMBL:U37247 EMBL:AF424550 EMBL:AY058103
EMBL:AY065093 EMBL:BT002632 IPI:IPI00538301 PIR:A57189 PIR:F84567
RefSeq:NP_179461.1 UniGene:At.10218 ProteinModelPortal:Q38885
SMR:Q38885 IntAct:Q38885 STRING:Q38885 PaxDb:Q38885 PRIDE:Q38885
EnsemblPlants:AT2G18710.1 GeneID:816386 KEGG:ath:AT2G18710
TAIR:At2g18710 HOGENOM:HOG000080585 InParanoid:Q38885 OMA:FIMWLGE
PhylomeDB:Q38885 ProtClustDB:CLSN2683056 Genevestigator:Q38885
GermOnline:AT2G18710 InterPro:IPR026593 Uniprot:Q38885
Length = 551
Score = 215 (80.7 bits), Expect = 9.4e-17, P = 9.4e-17
Identities = 60/171 (35%), Positives = 88/171 (51%)
Query: 7 LPNKDAKHYKKRLGRGIGSGSGAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSR 66
LP K + K LG S G +IP+ +N + QN+IL + FSGG + R
Sbjct: 138 LPGK----FLKLLGFLALSRLGIYIPLGGVNREAFVGNLD--QNSILSTLDTFSGGGIGR 191
Query: 67 LTIFSLGIMPYXXXXXXXXXXXXXXPKFENL-KKEGELGKYKIAQYIRFSTLILAILQGS 125
L I SLGI+P+ PK ++L KKEGE G+ KI QY R++++ AI+Q
Sbjct: 192 LGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRYASVGFAIVQAI 251
Query: 126 GISLILKSQKNLVLDTSFYFHFTTVLTLVSGTIFLMWLSEQITEYGLGNGT 176
G L+ N T + T+LTL G++ ++ E+I++ LGNGT
Sbjct: 252 GQVFYLRPYVN-DFSTEWVVSSVTLLTL--GSVLTTYIGERISDLKLGNGT 299
>TIGR_CMR|SPO_A0077 [details] [associations]
symbol:SPO_A0077 "translation initiation factor IF-1"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0005737 GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000032 GenomeReviews:CP000032_GR
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 OMA:KEDSIEM
ProtClustDB:PRK00276 RefSeq:YP_164908.1 ProteinModelPortal:Q5LLF0
SMR:Q5LLF0 GeneID:3196692 KEGG:sil:SPOA0077 PATRIC:23381458
Uniprot:Q5LLF0
Length = 72
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
E LPNATF+V+LEN H I+ H +GKMR N IR+L GDKV VE+TPYDL++GRI +R K
Sbjct: 15 ELLPNATFRVELENGHEIIAHTAGKMRKNRIRVLAGDKVQVEMTPYDLTKGRINYRFK 72
>TAIR|locus:2831681 [details] [associations]
symbol:AT4G11175 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] InterPro:IPR004368 InterPro:IPR006196
Pfam:PF01176 PROSITE:PS50832 GO:GO:0009507 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161531 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AF080120
EMBL:AL049876 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0361
EMBL:BT003712 EMBL:AK117848 EMBL:AK221313 IPI:IPI00516598
PIR:T01915 PIR:T08196 RefSeq:NP_192856.1 UniGene:At.43672
ProteinModelPortal:O82499 SMR:O82499 IntAct:O82499 STRING:O82499
PaxDb:O82499 PRIDE:O82499 EnsemblPlants:AT4G11175.1 GeneID:826719
KEGG:ath:AT4G11175 TAIR:At4g11175 HOGENOM:HOG000113002
InParanoid:O82499 KO:K02518 OMA:LENGDNI PhylomeDB:O82499
ProtClustDB:CLSN2686083 Genevestigator:O82499 GermOnline:AT4G11175
TIGRFAMs:TIGR00008 Uniprot:O82499
Length = 141
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
E+LPN F+V LEN ILG+I GK+R N+IRILPGDKV VE++ YD ++GRIIFR
Sbjct: 81 ESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVYDSTKGRIIFR 136
>UNIPROTKB|P0C378 [details] [associations]
symbol:infA "Translation initiation factor IF-1,
chloroplastic" species:4530 "Oryza sativa" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00075 InterPro:IPR004368 InterPro:IPR006196
Pfam:PF01176 PROSITE:PS50832 GO:GO:0009507 GO:GO:0009536
EMBL:AY522331 GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 KO:K02518
TIGRFAMs:TIGR00008 ProtClustDB:CHL00010 RefSeq:NP_039420.1
ProteinModelPortal:P0C378 SMR:P0C378 PRIDE:P0C378 GeneID:3131394
KEGG:osa:3131394 Gramene:P0C378 HOGENOM:HOG000221323
Genevestigator:P0C378 Uniprot:P0C378
Length = 107
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/56 (60%), Positives = 46/56 (82%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
E LPN F+V+LEND +ILG+ISGK+R + IRIL GD+V +E++ YD S+GRII+R
Sbjct: 26 EALPNGMFRVRLENDTIILGYISGKIRSSSIRILMGDRVKIEVSRYDSSKGRIIYR 81
>UNIPROTKB|P0C379 [details] [associations]
symbol:infA "Translation initiation factor IF-1,
chloroplastic" species:39946 "Oryza sativa Indica Group"
[GO:0009536 "plastid" evidence=IC] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0009507 GO:GO:0009536 EMBL:AY522329 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 TIGRFAMs:TIGR00008
ProtClustDB:CHL00010 RefSeq:YP_654238.1 ProteinModelPortal:P0C379
SMR:P0C379 GeneID:4126928 Gramene:P0C379 Uniprot:P0C379
Length = 107
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/56 (60%), Positives = 46/56 (82%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
E LPN F+V+LEND +ILG+ISGK+R + IRIL GD+V +E++ YD S+GRII+R
Sbjct: 26 EALPNGMFRVRLENDTIILGYISGKIRSSSIRILMGDRVKIEVSRYDSSKGRIIYR 81
>UNIPROTKB|P0C380 [details] [associations]
symbol:infA "Translation initiation factor IF-1,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009536 "plastid" evidence=IC] HAMAP:MF_00075
InterPro:IPR004368 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
GO:GO:0009507 GO:GO:0009536 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
eggNOG:COG0361 KO:K02518 TIGRFAMs:TIGR00008 ProtClustDB:CHL00010
RefSeq:NP_039420.1 GeneID:3131394 KEGG:osa:3131394 PIR:JQ0261
ProteinModelPortal:P0C380 SMR:P0C380 STRING:P0C380
EnsemblPlants:LOC_Os04g16834.1 EnsemblPlants:LOC_Os05g22716.1
EnsemblPlants:LOC_Osp1g00690.1 Gramene:P0C380 OMA:KEDSIEM
Uniprot:P0C380
Length = 107
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/56 (60%), Positives = 46/56 (82%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
E LPN F+V+LEND +ILG+ISGK+R + IRIL GD+V +E++ YD S+GRII+R
Sbjct: 26 EALPNGMFRVRLENDTIILGYISGKIRSSSIRILMGDRVKIEVSRYDSSKGRIIYR 81
>UNIPROTKB|Q6END9 [details] [associations]
symbol:infA "Translation initiation factor IF-1,
chloroplastic" species:4536 "Oryza nivara" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00075 InterPro:IPR004368 InterPro:IPR006196
Pfam:PF01176 PROSITE:PS50832 GO:GO:0009507 GO:GO:0009536
GO:GO:0003743 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP006728 InterPro:IPR022967 SMART:SM00316 TIGRFAMs:TIGR00008
RefSeq:YP_052784.1 ProteinModelPortal:Q6END9 SMR:Q6END9
GeneID:2885917 Gramene:Q6END9 ProtClustDB:CHL00010 Uniprot:Q6END9
Length = 107
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/56 (60%), Positives = 46/56 (82%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
E LPN F+V+LEND +ILG+ISGK+R + IRIL GD+V +E++ YD S+GRII+R
Sbjct: 26 EALPNGMFRVRLENDTIILGYISGKIRSSSIRILMGDRVKIEVSRYDSSKGRIIYR 81
>UNIPROTKB|P25014 [details] [associations]
symbol:secY "Protein translocase subunit SecY" species:2762
"Cyanophora paradoxa" [GO:0033115 "cyanelle thylakoid membrane"
evidence=IDA] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0015031 GO:GO:0009528 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967
InterPro:IPR026593 EMBL:M30487 EMBL:U30821 PIR:T06875
RefSeq:NP_043187.1 ProteinModelPortal:P25014 TCDB:3.A.5.6.1
GeneID:801593 ProtClustDB:CHL00161 GO:GO:0033115 Uniprot:P25014
Length = 492
Score = 186 (70.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 46/152 (30%), Positives = 76/152 (50%)
Query: 28 GAHIPIPSINYSQLTKLFEKN--QNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXX 85
G +PIP + + F++N +N + + N+ SGGA + F+LGI+PY
Sbjct: 67 GTFLPIPGTALNFDLESFQQNNSRNELANILNLLSGGAFLEIGFFTLGILPYMNASFFLQ 126
Query: 86 XXXXXXPKFENLKKEGE-LGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFY 144
P E +KE E + + + ++ R+ T+I A +Q IS I + L+ F+
Sbjct: 127 VLTKILPSLERFQKEQEEIAQREFKKWTRYLTVIWAFIQSIVISWIWI--RPYALNWDFF 184
Query: 145 FHFTTVLTLVSGTIFLMWLSEQITEYGLGNGT 176
V+ L G + +M ++EQITE GL NG+
Sbjct: 185 LGLKVVVALTLGAVIVMIIAEQITEIGLTNGS 216
>TIGR_CMR|ECH_0511 [details] [associations]
symbol:ECH_0511 "translation initiation factor IF-1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR004368
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
eggNOG:COG0361 KO:K02518 TIGRFAMs:TIGR00008 HOGENOM:HOG000221323
ProtClustDB:PRK00276 RefSeq:YP_507326.1 ProteinModelPortal:Q2GGV7
STRING:Q2GGV7 GeneID:3927464 KEGG:ech:ECH_0511 PATRIC:20576492
OMA:HASGKIR BioCyc:ECHA205920:GJNR-513-MONOMER Uniprot:Q2GGV7
Length = 82
Score = 116 (45.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 210 LPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRI 260
L +ATF V+L +++ I+ H SGK+R + IRIL D+V VE++ Y +++G +
Sbjct: 18 LRDATFMVRLNDNYEIIAHASGKIRKSKIRILMHDRVLVEISTYGINKGEV 68
>TIGR_CMR|NSE_0882 [details] [associations]
symbol:NSE_0882 "translation initiation factor IF-1"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR004368
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0361 KO:K02518
TIGRFAMs:TIGR00008 HOGENOM:HOG000221323 ProtClustDB:PRK00276
RefSeq:YP_506748.1 ProteinModelPortal:Q2GCP8 STRING:Q2GCP8
GeneID:3932231 KEGG:nse:NSE_0882 PATRIC:22681753 OMA:EILAHSC
BioCyc:NSEN222891:GHFU-885-MONOMER Uniprot:Q2GCP8
Length = 93
Score = 108 (43.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 208 ENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVEL-TPYDLSRGRIIFR 263
E L F+V+LEN IL H GKMR I+I+ DKV V + YD +RG I+ R
Sbjct: 15 EVLRGPEFRVRLENGREILAHSCGKMRRKKIKIILSDKVVVSMFLQYDTNRGIIVER 71
>TIGR_CMR|APH_0395 [details] [associations]
symbol:APH_0395 "translation initiation factor IF-1"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR004368
InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003743 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
eggNOG:COG0361 KO:K02518 TIGRFAMs:TIGR00008 HOGENOM:HOG000221323
ProtClustDB:PRK00276 RefSeq:YP_505000.1 ProteinModelPortal:Q2GKV1
STRING:Q2GKV1 GeneID:3930608 KEGG:aph:APH_0395 PATRIC:20949398
OMA:IMAHASG BioCyc:APHA212042:GHPM-423-MONOMER Uniprot:Q2GKV1
Length = 81
Score = 102 (41.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 210 LPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYD-----LSRGRIIFRT 264
L +A F VKL + + I+ H SG++R + IRIL D+V VE++ Y L +GR++ R
Sbjct: 18 LRDAVFIVKLNDGYEIMAHASGRIRKSKIRILMHDRVMVEVSSYGVNKNGLGKGRVVSRL 77
Query: 265 K 265
+
Sbjct: 78 R 78
>TAIR|locus:2065868 [details] [associations]
symbol:SCY2 "SECY HOMOLOG 2" species:3702 "Arabidopsis
thaliana" [GO:0005886 "plasma membrane" evidence=ISM] [GO:0009306
"protein secretion" evidence=ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0015031 "protein
transport" evidence=IEA] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA;ISS] [GO:0009526 "plastid
envelope" evidence=IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] InterPro:IPR002208 Pfam:PF00344
PANTHER:PTHR10906 GO:GO:0016021 EMBL:CP002685 GO:GO:0015031
GO:GO:0031969 GO:GO:0009535 EMBL:AC007071 GO:GO:0009526
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 EMBL:AY062590 EMBL:AY093354 EMBL:BX820289
IPI:IPI00524025 PIR:H84721 RefSeq:NP_180711.4 UniGene:At.27291
ProteinModelPortal:F4IQV7 SMR:F4IQV7 PRIDE:F4IQV7
EnsemblPlants:AT2G31530.1 GeneID:817711 KEGG:ath:AT2G31530
TAIR:At2g31530 HOGENOM:HOG000241422 InParanoid:Q9SIQ4 OMA:YIPFNIN
GO:GO:0033097 Uniprot:F4IQV7
Length = 575
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 38/150 (25%), Positives = 65/150 (43%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYXXXXXXXXXX 87
G IP+P + + + + + + F GA +L++F LG+ P
Sbjct: 169 GYFIPLPGFDRRLIPQDYLSFVSGSVEELGEF--GAEIKLSLFQLGLSPQIIASIIMQVL 226
Query: 88 XXXXPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFH- 146
P L+KEG G KI YI + + AI++ ++ Q ++ T+ H
Sbjct: 227 CHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYT-SLQYSVFAATAQVKHV 285
Query: 147 FTTVLTLVSGTIFLMWLSEQITEYGLGNGT 176
T LV G + + WL + I+E G G+G+
Sbjct: 286 MMTSSLLVCGAMTMTWLCDTISESGFGHGS 315
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.141 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 265 222 0.00096 112 3 11 22 0.37 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 569 (61 KB)
Total size of DFA: 152 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.28u 0.10s 16.38t Elapsed: 00:00:12
Total cpu time: 16.29u 0.10s 16.39t Elapsed: 00:00:12
Start: Thu Aug 15 11:32:52 2013 End: Thu Aug 15 11:33:04 2013