RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8862
(265 letters)
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 422
Score = 123 bits (310), Expect = 2e-33
Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 18/185 (9%)
Query: 28 GAHIPIPSINYSQLTKLFEKNQNNILGMFNMFSGGALSRLTIFSLGIMPYISSSIIMQLL 87
I + + I + + T+ +LGI P +++ IIMQLL
Sbjct: 39 MGCIDVYTAG---------AQIPAIFEFWQTITAS--RIGTLITLGIGPIVTAGIIMQLL 87
Query: 88 SSIMPKFENLKKEGELGKYKIAQYIRFSTLILAILQGSGISLILKSQKNLVLDTSFYFHF 147
+ + + ++I+ ++ + F
Sbjct: 88 V--GSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGA-----GAFGILTPLLAF 140
Query: 148 TTVLTLVSGTIFLMWLSEQITEYGLGNGTSIIICSGIISSFPNILINLLKLVKIDLVNII 207
++ + G+I L++L E +++YG+G+G + I +G+ + + + L ++I
Sbjct: 141 LVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLI 200
Query: 208 ENLPN 212
+ +PN
Sbjct: 201 QGVPN 205
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 103 bits (260), Expect = 2e-29
Identities = 39/58 (67%), Positives = 50/58 (86%)
Query: 206 IIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
+ E LPNATF+VKL++ IL +ISGKMRM+YIRILPGD+V VE+TPYD +RGRI++R
Sbjct: 13 VTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYR 70
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 97.1 bits (242), Expect = 9e-27
Identities = 43/60 (71%), Positives = 52/60 (86%)
Query: 206 IIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFRTK 265
++E LPN F+V+LEN HV+ HISGKMR NYIRIL GDKVTVELTPYDLS+GRI+FR++
Sbjct: 12 VLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 69.3 bits (170), Expect = 7e-16
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 206 IIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDL-SRGRIIFR 263
I + L + +V+ + LG I G+++ I + GD V V+ + II+R
Sbjct: 26 IEQMLGASRVRVRCLDGKTRLGRIPGRLKNR-IWVREGDVVIVKPWEVQGDQKCDIIWR 83
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 67.6 bits (165), Expect = 8e-15
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 206 IIENLPNATFKVKLENDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRIIFR 263
+I+ L N + + L HI GK+R + I D + V L Y ++ +I +
Sbjct: 37 VIKMLGNGRLEAMCFDGVKRLCHIRGKLR-KKVWINTSDIILVGLRDYQDNKADVILK 93
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
{Escherichia coli [TaxId: 562]}
Length = 140
Score = 39.2 bits (91), Expect = 1e-04
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 4 NNILPNKDAKHYKKRLGRGIGSGSG 28
N + P + +K KRLGRGIGSG G
Sbjct: 1 NTLSPAEGSKKAGKRLGRGIGSGLG 25
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
thermophilus [TaxId: 274]}
Length = 146
Score = 36.5 bits (84), Expect = 8e-04
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 5 NILPNKDAKHYKKRLGRGIGSGSG 28
++ PN A +KR+GRG GSG G
Sbjct: 1 DLRPNPGANKRRKRVGRGPGSGHG 24
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 67
Score = 29.7 bits (67), Expect = 0.050
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 215 FKVKLE---NDHVILGHISGKMRMNYIRILPGDKVTVELTPYDLSRGRI 260
+ V E +D VI G R N I L GD V + + G +
Sbjct: 14 YYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAE--NDKEGYL 60
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 87
Score = 28.2 bits (63), Expect = 0.30
Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 9/84 (10%)
Query: 182 SGIISSFPN--ILINLLKLVKIDLVNIIENLPNATFKVKLENDHVILGHISGKMRMNYIR 239
+ I + + L+ L + + I G+
Sbjct: 8 AAEIVDISRGGMRVRLVDN-GAIAFIPAPFLHA-VRDELVCSQENGTVQIKGETVYK--- 62
Query: 240 ILPGDKVTVELTPYDLSRGRIIFR 263
D + V + + II R
Sbjct: 63 --VTDVIDVTIAEVRMETRSIIAR 84
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 141
Score = 28.8 bits (64), Expect = 0.34
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 5 NILPNKDAKHYKKRLGRGIGS 25
++ P ++ +KR+GRG G
Sbjct: 2 DLKPTPGSRKDRKRVGRGPGG 22
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 28.8 bits (64), Expect = 0.41
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 12 AKHYKKRLGRGIGSGSG 28
+K ++R R G GS
Sbjct: 2 SKKKRQRGSRTHGGGSH 18
>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus
niger [TaxId: 5061]}
Length = 203
Score = 26.7 bits (59), Expect = 2.6
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 238 IRILPGDKVTVELTPYDLSRGRIIF 262
I I GD + V + S G
Sbjct: 85 ITISEGDSIKVTVEATSKSSGSATV 109
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii
[TaxId: 1474]}
Length = 122
Score = 25.8 bits (57), Expect = 3.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 232 KMRMNY-----IRILPGDKVTVELTPYDLSRGRIIF 262
R+N R PG+++ VELT R +F
Sbjct: 60 GRRLNIPSGTAARFEPGEEMEVELTEL--GGNREVF 93
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter
pylori [TaxId: 210]}
Length = 133
Score = 24.7 bits (54), Expect = 7.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 232 KMRMNY-----IRILPGDKVTVELTPYDLSRGRIIF 262
R++ +R PG++ +VEL R IF
Sbjct: 58 GKRLDIAAGTAVRFEPGEEKSVELIDI--GGNRRIF 91
>d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 148
Score = 25.0 bits (54), Expect = 8.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 228 HISGKMRMNYIRILPGDKVTVELTPYD 254
I G+ +N R GD+V VEL P
Sbjct: 49 LIVGQKNLN--RAFNGDQVIVELLPQS 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.400
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 966,388
Number of extensions: 44391
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 18
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)