BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8863
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust.
Identities = 258/447 (57%), Positives = 330/447 (73%), Gaps = 18/447 (4%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
MLKRVMGK SF +QD SG +IQ +++ +G Y FK +D+GDI+ A+G LF+
Sbjct: 96 MLKRVMGKASFATVQDGSG-----QIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFR 150
Query: 61 TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
TN GELS+K + L+L+ K+LRPLP+KF L++QE +YR RY+DLI+ TR F+ RT+
Sbjct: 151 TNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210
Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
I+SIR FM DFMEVETP+LH PGGA AKPF+THHN+L+M+MFLRIAPELYLKRLI+G
Sbjct: 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVG 270
Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
GF ++FEIN+NFRNEG+SPRHNPEFTM+EFYAAYT+Y WLM FTE++I++ +D +GT
Sbjct: 271 GFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTAT 330
Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKIN-----PKFXXX 295
I YQGR LD ++ F +LTI +AI+KY P Y + L + FL+SELK++ P F
Sbjct: 331 IQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNA 390
Query: 296 XXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFII 355
LFEET E +LW PT+I +YP E+SPLAR+S+ ITERFELFI
Sbjct: 391 GIGALQLA------LFEETAEAQLWEPTFIIDYPIEVSPLARESDT-VAGITERFELFIT 443
Query: 356 GNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIG 415
G EIANGFSELNDPE+Q+ RFK Q++ K+ E + ++D DYI ALEYGMPP GCGIG
Sbjct: 444 GREIANGFSELNDPEDQAARFKKQVEQKD-AGDEEAMFFDADYIRALEYGMPPTGGCGIG 502
Query: 416 VDRLIMLLTNSKNIRDVILFPHLRNEN 442
+DRL+MLLT+S IRDV+LFPHLR E+
Sbjct: 503 IDRLVMLLTDSPTIRDVLLFPHLRRED 529
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/440 (52%), Positives = 312/440 (70%), Gaps = 13/440 (2%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTD-FKNYDIGDIIGAKGTLF 59
M +R+MGK SF+ LQD G +IQLY++ + + + +Y D FK +D+GDIIGA+GTLF
Sbjct: 74 MTRRIMGKASFVTLQDVGG-----RIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLF 128
Query: 60 KTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQ 119
KT TGELSI + L+L+TK+LRPLP+KF L +QE++YR RY+DLI N+ +R+ F R++
Sbjct: 129 KTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 188
Query: 120 IISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
I+++IR FM FMEVETP++ PGGA A+PFITHHN+L++ M+LRIAPELYLKRL++
Sbjct: 189 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVV 248
Query: 180 GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239
GGF ++FEIN+NFRNEGIS RHNPEFTM+E Y AY +Y L++ TE + + + + +GTT
Sbjct: 249 GGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT 308
Query: 240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXXXX 299
K+ Y + DF K FEKLT+ EAIKKY P+ + DL N K+ + I
Sbjct: 309 KVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIG-----ITVEK 363
Query: 300 XXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEI 359
+F+E E L PT+IT YP E+SPLAR++++ N IT+RFE FI G EI
Sbjct: 364 SWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDV-NPEITDRFEFFIGGREI 422
Query: 360 ANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRL 419
NGFSELND E+Q+ RF+ Q++ K + E + +YD DY+ ALEYG+PP +G GIG+DR+
Sbjct: 423 GNGFSELNDAEDQAERFQEQVNAKAAGDDE-AMFYDEDYVTALEYGLPPTAGLGIGIDRM 481
Query: 420 IMLLTNSKNIRDVILFPHLR 439
IML TNS IRDVILFP +R
Sbjct: 482 IMLFTNSHTIRDVILFPAMR 501
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/440 (52%), Positives = 308/440 (70%), Gaps = 13/440 (2%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTD-FKNYDIGDIIGAKGTLF 59
M +R+MGK SF+ LQD G +IQLY++ + + + +Y + FK +D+GDI+GAKG LF
Sbjct: 74 MTRRIMGKASFVTLQDVGG-----RIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLF 128
Query: 60 KTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQ 119
KT TGELSI + L+L+TK+LRPLP+KF L +QE +YR RY+DLI N+ +R FK R+Q
Sbjct: 129 KTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQ 188
Query: 120 IISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
I+S IR FM FMEVETP++ PGGA A+PFITHHN+L++ M+LRIAPELYLKRL++
Sbjct: 189 ILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVV 248
Query: 180 GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239
GGF ++FEIN+NFRNEGIS RHNPEFTM+E Y AY +Y L++ TE + + + D +G T
Sbjct: 249 GGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKT 308
Query: 240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXXXX 299
++ Y LDF K FEKLT+ EAIKKY P+ + DL N K+ + I
Sbjct: 309 EVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLG 368
Query: 300 XXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEI 359
+FEE E L PT+IT YP E+SPLAR++++ N IT+RFE FI G EI
Sbjct: 369 RIVTE-----IFEEVAEAHLIQPTFITEYPAEVSPLARRNDV-NPEITDRFEFFIGGREI 422
Query: 360 ANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRL 419
NGFSELND E+Q+ RF +Q+ K+ + E + +YD DY+ ALE+G+PP +G GIG+DR+
Sbjct: 423 GNGFSELNDAEDQAQRFLDQVAAKDAGDDE-AMFYDEDYVTALEHGLPPTAGLGIGIDRM 481
Query: 420 IMLLTNSKNIRDVILFPHLR 439
+ML TNS IRDVILFP +R
Sbjct: 482 VMLFTNSHTIRDVILFPAMR 501
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/440 (47%), Positives = 292/440 (66%), Gaps = 13/440 (2%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
M KR MGK F +QD +G +IQ+Y+ + +G+ Y FK D+GDI+G +GT+FK
Sbjct: 66 MTKRGMGKAGFAHIQDVTG-----QIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFK 120
Query: 61 TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
T GELSIKVSS + +TK+LRPLP K+ L + E +YR RY+DLI+N ++K F R+ I
Sbjct: 121 TKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLI 180
Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
I S+R +++ + ++EVETP++H GGA A+PFITHHN+L+M +++RIA EL+LKRLI+G
Sbjct: 181 IQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVG 240
Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
G K++EI + FRNEGIS RHNPEFTM+E Y AY ++ +MK TE +I I + +GTTK
Sbjct: 241 GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK 300
Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXXXXX 300
I Y L+D + + +L +++AIK+Y +D ++ E + K
Sbjct: 301 IQYGEHLVDLTPEWRRLHMVDAIKEYVG----VDFWRQM--SDEEARELAKEHGVEVAPH 354
Query: 301 XXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIA 360
FE+ E KL PT+I +P EISPLA+K N ++ T+RFELFI+G E A
Sbjct: 355 MTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKK-NPDDPRFTDRFELFIVGREHA 413
Query: 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
N F+ELNDP +Q RF+ Q+ + + N E + D D++ ALEYGMPP G GIGVDRL+
Sbjct: 414 NAFTELNDPIDQRQRFEEQLKEREQGNDE-AHEMDEDFLEALEYGMPPTGGLGIGVDRLV 472
Query: 421 MLLTNSKNIRDVILFPHLRN 440
MLLTNS +IRDV+LFP +R+
Sbjct: 473 MLLTNSPSIRDVLLFPQMRH 492
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 246/408 (60%), Gaps = 23/408 (5%)
Query: 49 GDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINE 108
GDIIG +G KT GELSI + L++ L LP+ L ++E +YR RY+DLI+N+
Sbjct: 111 GDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILND 170
Query: 109 NTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRI 168
R+ F R++II+ IR F+++ F+E+ETP+++ PGGA+AKPFIT+HN L+M +++RI
Sbjct: 171 FVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRI 230
Query: 169 APELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228
APELY K L++GG ++++EI + FRNEGI HNPEFT EFY AY +Y LM+ TEKM+
Sbjct: 231 APELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 290
Query: 229 KKIIMDCIGTTKIDY-------QGRLLDFSKSFEKLTIIEAIKKY----TPQYNEIDLQN 277
++ G+ K+ Y Q +DF+ F ++ ++E ++K P+ N
Sbjct: 291 SGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETN------ 344
Query: 278 KLFLKSELKKINPKFXXXXXXXXXXXXXXXXM---LFEETTETKLWNPTYITNYPTEISP 334
LF E +KI + L E E NPT+I ++P +SP
Sbjct: 345 -LFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 403
Query: 335 LARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYY 394
LA K + +TERFELF++ EI N ++ELNDP Q F+ Q K + E + +
Sbjct: 404 LA-KWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDE-AMFI 461
Query: 395 DTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
D ++ ALEYG+PP +G G+G+DR+ M LT+S NI++V+LFP ++ E+
Sbjct: 462 DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED 509
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 246/408 (60%), Gaps = 23/408 (5%)
Query: 49 GDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINE 108
GDIIG +G KT GELSI + L++ L LP+ L ++E +YR RY+DLI+N+
Sbjct: 111 GDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILND 170
Query: 109 NTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRI 168
R+ F R++II+ IR F+++ F+E+ETP+++ PGGA+AKPFIT+HN L+M +++RI
Sbjct: 171 FVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRI 230
Query: 169 APELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228
APELY K L++GG ++++EI + FRNEGI HNPEFT EFY AY +Y LM+ TEKM+
Sbjct: 231 APELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 290
Query: 229 KKIIMDCIGTTKIDY-------QGRLLDFSKSFEKLTIIEAIKKY----TPQYNEIDLQN 277
++ G+ K+ Y Q +DF+ F ++ ++E ++K P+ N
Sbjct: 291 SGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETN------ 344
Query: 278 KLFLKSELKKINPKFXXXXXXXXXXXXXXXXM---LFEETTETKLWNPTYITNYPTEISP 334
LF E +KI + L E E NPT+I ++P +SP
Sbjct: 345 -LFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSP 403
Query: 335 LARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYY 394
LA K + +TERFELF++ EI N ++ELNDP Q F+ Q K + E + +
Sbjct: 404 LA-KWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDE-AMFI 461
Query: 395 DTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
D ++ ALEYG+PP +G G+G+DR+ M LT+S NI++V+LFP ++ E+
Sbjct: 462 DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED 509
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 161/328 (49%), Gaps = 33/328 (10%)
Query: 116 KRTQIISSIRHFMEKNDFMEVETPILHNKPGGAI-----AKPFITHHNSLNMKMFLRIAP 170
KR I++ IR F +EVETP + I F+ +S M ++L +P
Sbjct: 21 KRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSP 80
Query: 171 ELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230
E ++KRL++ G +F++ ++FRNE + HNPEFTM+E+Y + + LM + ++++
Sbjct: 81 EYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 140
Query: 231 IIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINP 290
++ DC + YQ L +Y EID + K++L+++
Sbjct: 141 VL-DCPAAESLSYQQAFL--------------------RYLEIDPLSAD--KTQLREVAA 177
Query: 291 KFXXX-XXXXXXXXXXXXXMLFEETTETKLWN--PTYITNYPTEISPLARKSNIENNNIT 347
K +LF E + PT++ ++P + LA+ S E++ +
Sbjct: 178 KLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIST-EDHRVA 236
Query: 348 ERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMP 407
ERFE++ G E+ANGF EL D EQ RF+ Q + K G D + I AL+ GMP
Sbjct: 237 ERFEVYYKGIELANGFHELTDAREQQQRFE-QDNRKRAARGLPQHPIDQNLIEALKVGMP 295
Query: 408 PASGCGIGVDRLIMLLTNSKNIRDVILF 435
SG +GVDRL+ML ++ + +VI F
Sbjct: 296 DCSGVALGVDRLVMLALGAETLAEVIAF 323
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 161/328 (49%), Gaps = 33/328 (10%)
Query: 116 KRTQIISSIRHFMEKNDFMEVETPILHNKPGGAI-----AKPFITHHNSLNMKMFLRIAP 170
KR I++ IR F +EVETP + I F+ +S M ++L +P
Sbjct: 38 KRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSP 97
Query: 171 ELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230
E ++KRL++ G +F++ ++FRNE + HNPEFTM+E+Y + + LM + ++++
Sbjct: 98 EYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 157
Query: 231 IIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINP 290
++ DC + YQ L +Y EID + K++L+++
Sbjct: 158 VL-DCPAAESLSYQQAFL--------------------RYLEIDPLSAD--KTQLREVAA 194
Query: 291 KFXXX-XXXXXXXXXXXXXMLFEETTETKLWN--PTYITNYPTEISPLARKSNIENNNIT 347
K +LF E + PT++ ++P + LA+ S E++ +
Sbjct: 195 KLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIST-EDHRVA 253
Query: 348 ERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMP 407
ERFE++ G E+ANGF EL D EQ RF+ Q + K G D + I AL+ GMP
Sbjct: 254 ERFEVYYKGIELANGFHELTDAREQQQRFE-QDNRKRAARGLPQHPIDQNLIEALKVGMP 312
Query: 408 PASGCGIGVDRLIMLLTNSKNIRDVILF 435
SG +GVDRL+ML ++ + +VI F
Sbjct: 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 162/331 (48%), Gaps = 39/331 (11%)
Query: 116 KRTQIISSIRHFMEKNDFMEVETPILHNKPGGAI-----AKPFITHHNSLNMKMFLRIAP 170
KR I++ IR F +EVETP + I F+ +S + ++L +P
Sbjct: 19 KRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGINLYLMTSP 78
Query: 171 ELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230
E ++KRL+ G +F++ ++FRNE + HNPEFTM+E+Y + + LM + ++++
Sbjct: 79 EYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 138
Query: 231 IIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNE----IDLQNKLFLKSELK 286
++ DC + YQ ++F++ I+ + Q E +DL N + +
Sbjct: 139 VL-DCQPAESLSYQ-------QAFQRHLEIDPLSADKTQLREAAAKLDLSNIADTEEDRD 190
Query: 287 KINPKFXXXXXXXXXXXXXXXXMLFEETTETKLWN--PTYITNYPTEISPLARKSNIENN 344
+ +LF E + PT+I ++P + LA+ S E++
Sbjct: 191 TL------------------LQLLFTMGVEPHIGKEKPTFIYHFPASQASLAQIST-EDH 231
Query: 345 NITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEY 404
+ ERFE++ G E+ANGF EL D EQ RF+ Q + K G D + + AL
Sbjct: 232 RVAERFEVYYKGIELANGFHELTDAREQQQRFE-QDNRKRAARGLPQQPIDQNLLDALAA 290
Query: 405 GMPPASGCGIGVDRLIMLLTNSKNIRDVILF 435
G+P SG +GVDRL+ML ++++ DVI F
Sbjct: 291 GLPDCSGVALGVDRLVMLALGAESLADVIAF 321
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 156/381 (40%), Gaps = 63/381 (16%)
Query: 81 RPLPNKFQKL------------SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFM 128
RPL +++ KL +Q+ + +R +DL N +F+ ++ R F+
Sbjct: 200 RPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNI-AIFRIQSACCGLFREFL 258
Query: 129 EKNDFMEVETPIL--HNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIF 186
F+E+ TP L + GG+ I + K +L +P+LY + I+G F K+F
Sbjct: 259 TSQKFVEIHTPKLIGCSSEGGS----NIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVF 314
Query: 187 EINKNFRNEGI-SPRHNPEFTMIEFYAAYT-NYIWLMKFTEKM-------IKKIIMDCIG 237
E+ FR E + RH EF ++ NY + EK+ I K D +
Sbjct: 315 EVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELK 374
Query: 238 TTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXX 297
+ Y L + + F +LT EAI+ I + E+K
Sbjct: 375 VIRKQYPFEDLIY-RPFLRLTYKEAIEMLRASGETIGDYDDFTTPQEVK----------- 422
Query: 298 XXXXXXXXXXXMLFEETTETKLWNPTYITN-YPTEISPLARKSNIENNNITERFELFIIG 356
E + K YI + +P I P +I++ N + +++F+ G
Sbjct: 423 -------------LGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG 469
Query: 357 NEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGV 416
EI +G ++DPE +K I + DYI + +G P +GCGIG+
Sbjct: 470 QEITSGAQRIHDPE---------FLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGL 520
Query: 417 DRLIMLLTNSKNIRDVILFPH 437
+R+ ML NIR V LFP
Sbjct: 521 ERITMLYLGIPNIRKVTLFPR 541
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/451 (24%), Positives = 200/451 (44%), Gaps = 70/451 (15%)
Query: 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKN--LYTDFKNYDIGDIIGAKGTLF 59
L R +G FI+L+D +G + ++ KN + + +I +G +
Sbjct: 27 LLRDLGGKKFIILRDKTG----------LGQVVVDKNSSAFGISQELTQESVIQVRGIVK 76
Query: 60 KTNTGELSIKVSS--LKLITKSLRPLPNKFQKLSNQEI--KYRHRYIDLIINENTRKVFK 115
I++ + + L++K+ PLP +I + R R +DL E + V K
Sbjct: 77 ADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQE-MQAVIK 135
Query: 116 KRTQIISSIRHFMEKNDFMEVETP--ILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELY 173
++ + + R + K F+E+ TP I GGA P I + FL +P+LY
Sbjct: 136 IQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQSPQLY 191
Query: 174 LKRLIIGGFNKIFEINKNFR-NEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKII 232
K L+ G ++FE+ +R E +P H EF ++ A+ +Y +M+ EK++ I+
Sbjct: 192 -KELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIV 250
Query: 233 MDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKS----ELKKI 288
I +G+ E+L I+ Y P +I ++ + ++ K
Sbjct: 251 ------KTIKEEGK--------EELKIL----NYEPPEVKIPIKRLKYTEAIEILRSKGY 292
Query: 289 NPKFXXXXXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITE 348
N KF +L EE E + +I ++P++ P KS EN ++E
Sbjct: 293 NIKF------GDDIGTPELRILNEELKE----DLYFIVDWPSDARPFYTKSKSENPELSE 342
Query: 349 RFELFIIGNEIANGFSELNDPE--EQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGM 406
F+L EI +G + + E E++++ K LK E ++D YGM
Sbjct: 343 SFDLIYKFLEIVSGSTRNHKREVLEEALKKKG---LKPESFEFFLKWFD--------YGM 391
Query: 407 PPASGCGIGVDRLIMLLTNSKNIRDVILFPH 437
PP +G G+G+ RL+++LT +++++++ FP
Sbjct: 392 PPHAGFGMGLARLMVMLTGIQSVKEIVPFPR 422
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 185/451 (41%), Gaps = 65/451 (14%)
Query: 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGE 65
+G I F+ ++D +G +Q+ + + L+ D++ +G + T +
Sbjct: 31 LGGIKFLWIRD-----RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAK 85
Query: 66 LSIKVSSLKLIT--KSLRPLPNKFQKLSNQEIKYR--HRYIDLIINENTRKVFKKRTQII 121
L ++ K++ ++ PLP E+ R +R++DL E +FK R+ +
Sbjct: 86 LGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPE-VMAIFKIRSSVF 144
Query: 122 SSIRHFMEKNDFMEVETP--ILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
++R F +N F+E+ TP I GG P FL +P+LY + ++
Sbjct: 145 KAVRDFFHENGFIEIHTPKIIATATEGGTELFPM----KYFEEDAFLAQSPQLYKQIMMA 200
Query: 180 GGFNKIFEINKNFR-NEGISPRHNPEFTMIEFYAAY-TNYIWLMKFTEKMIKKII----- 232
G ++++EI FR E + RH E I+ A+ + +M F E+++ I
Sbjct: 201 SGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVRE 260
Query: 233 --MDCIGTTKIDYQGRLLDFSK-SFEK-LTIIEAIKKYTPQYNEIDLQNKLFLKSELKKI 288
+ + + L F + S++K L I+ + K P +ID + + L +
Sbjct: 261 HNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMM-- 318
Query: 289 NPKFXXXXXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITE 348
E L+ ++ YP+E P I
Sbjct: 319 ------------------------ENENAPLY---FLYQYPSEAKPFYIMKYDNKPEICR 351
Query: 349 RFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPP 408
F+L G EI++G E + QI K +N E + Y+ A YGMPP
Sbjct: 352 AFDLEYRGVEISSG----GQREHRHDILVEQIKEKG-LNPESFEF----YLKAFRYGMPP 402
Query: 409 ASGCGIGVDRLIMLLTNSKNIRDVILFPHLR 439
G G+G +RLI + + NIR+VILFP R
Sbjct: 403 HGGFGLGAERLIKQMLDLPNIREVILFPRDR 433
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 185/451 (41%), Gaps = 65/451 (14%)
Query: 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGE 65
+G I F+ ++D +G +Q+ + + L+ D++ +G + T +
Sbjct: 31 LGGIKFLWIRD-----RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAK 85
Query: 66 LSIKVSSLKLIT--KSLRPLPNKFQKLSNQEIKYR--HRYIDLIINENTRKVFKKRTQII 121
L ++ K++ ++ PLP E+ R +R++DL E +FK R+ +
Sbjct: 86 LGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPE-VMAIFKIRSSVF 144
Query: 122 SSIRHFMEKNDFMEVETP--ILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
++R F +N F+E+ TP I GG P FL +P+LY + ++
Sbjct: 145 KAVRDFFHENGFIEIHTPKIIATATEGGTELFPM----KYFEEDAFLAESPQLYKEIMMA 200
Query: 180 GGFNKIFEINKNFR-NEGISPRHNPEFTMIEFYAAY-TNYIWLMKFTEKMIKKII----- 232
G ++++EI FR E + RH E I+ A+ + +M F E+++ I
Sbjct: 201 SGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVRE 260
Query: 233 --MDCIGTTKIDYQGRLLDFSK-SFEK-LTIIEAIKKYTPQYNEIDLQNKLFLKSELKKI 288
+ + + L F + S++K L I+ + K P +ID + + L +
Sbjct: 261 HNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMM-- 318
Query: 289 NPKFXXXXXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITE 348
E L+ ++ YP+E P I
Sbjct: 319 ------------------------ENENAPLY---FLYQYPSEAKPFYIMKYDNKPEICR 351
Query: 349 RFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPP 408
F+L G EI++G E + QI K +N E + Y+ A YGMPP
Sbjct: 352 AFDLEYRGVEISSG----GQREHRHDILVEQIKEKG-LNPESFEF----YLKAFRYGMPP 402
Query: 409 ASGCGIGVDRLIMLLTNSKNIRDVILFPHLR 439
G G+G +RLI + + NIR+VILFP R
Sbjct: 403 HGGFGLGAERLIKQMLDLPNIREVILFPRDR 433
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 183/452 (40%), Gaps = 72/452 (15%)
Query: 3 KRVMGKISFIMLQDTSGPDS--NGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
+R +G+I F++L+D SG G ++L + + +G + +
Sbjct: 25 RRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPE-----------------SALRVRGLVVE 67
Query: 61 --TNTGELSIKVSSLKLITKSLRPLPNKFQK---LSNQEIKYRHRYIDLIINENTRKVFK 115
G L ++ +++++ +L P P + K +N + +RY+ L E R K
Sbjct: 68 NAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLR-GEKARAPLK 126
Query: 116 KRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLK 175
+ ++ R ++++ DF E+ TP + GA + + + +L +P+LY K
Sbjct: 127 VQAALVRGFRRYLDRQDFTEIFTPKVVR--AGAEGGSGLFGVDYFEKRAYLAQSPQLY-K 183
Query: 176 RLIIGGFNKIFEINKNFR-NEGISPRHNPEFTMIEFYAAY-TNYIWLMKFTEKMIKKIIM 233
++++G F +++E+ +R E + RH E+ ++ + + LM+ E ++ +++
Sbjct: 184 QIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLE 243
Query: 234 DCIGTTKIDYQGRLL-----DFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKI 288
+ + T + RLL F + +LT EA K LK EL
Sbjct: 244 EALNTAGDEI--RLLGATWPSFPQDIPRLTHAEA---------------KRILKEELG-- 284
Query: 289 NPKFXXXXXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITE 348
+L E E + ++T YP + P + E + T
Sbjct: 285 -------YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPF--YTYPEEDGTTR 335
Query: 349 RFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPP 408
F+L G EI +G ++ EE K + +G Y+ +YGMPP
Sbjct: 336 SFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHG---------YLEVFKYGMPP 386
Query: 409 ASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440
G IG +RL L N+R FP R+
Sbjct: 387 HGGFAIGAERLTQKLLGLPNVRYARAFPRDRH 418
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 141/294 (47%), Gaps = 43/294 (14%)
Query: 3 KRVMGKISFIMLQDTSG-------PDSNGKIQLY--ISNE----IIGKNLYTDFKNYDIG 49
+R +G + FI ++D G PD ++L + NE + G D KN +
Sbjct: 27 RRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNIN-- 84
Query: 50 DIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINEN 109
TGE+ + SSL +I ++ LP ++ +E + ++RY+DL E
Sbjct: 85 ---------RDMATGEIEVLASSLTIINRA-DVLPLDSNHVNTEEARLKYRYLDLRRPEM 134
Query: 110 TRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKPFITHHNSLNMKMF-LR 167
+++ K R +I S +R FM+ + F+++ETP+L P GA + ++ K + L
Sbjct: 135 AQRL-KTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA--RDYLVPSRVHKGKFYALP 191
Query: 168 IAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKM 227
+P+L+ + L++ GF++ ++I K FR+E + PEFT I+ ++ + + E +
Sbjct: 192 QSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEAL 251
Query: 228 IKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFL 281
++ + ++ G D F +T EA ++Y ++ DL+N + L
Sbjct: 252 VRHLWLEVKGVDLGD-----------FPVMTFAEAERRYGS--DKPDLRNPMEL 292
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 310 LFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDP 369
+FE+ E L + P +++ K+ EN + +++ I G E+ G +++
Sbjct: 435 MFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENA-VANAYDMVINGYEVGGGSVRIHNG 493
Query: 370 EEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNI 429
+ Q F + + E E + + AL+YG PP +G G+DRL MLLT + NI
Sbjct: 494 DMQQTVF-GILGINEEEQREKFGFL----LDALKYGTPPHAGLAFGLDRLTMLLTGTDNI 548
Query: 430 RDVILFP 436
RDVI FP
Sbjct: 549 RDVIAFP 555
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 141/294 (47%), Gaps = 43/294 (14%)
Query: 3 KRVMGKISFIMLQDTSG-------PDSNGKIQLY--ISNE----IIGKNLYTDFKNYDIG 49
+R +G + FI ++D G PD ++L + NE + G D KN +
Sbjct: 27 RRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNIN-- 84
Query: 50 DIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINEN 109
TGE+ + SSL +I ++ LP ++ +E + ++RY+DL E
Sbjct: 85 ---------RDMATGEIEVLASSLTIINRA-DVLPLDSNHVNTEEARLKYRYLDLRRPEM 134
Query: 110 TRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKPFITHHNSLNMKMF-LR 167
+++ K R +I S +R FM+ + F+++ETP+L P GA + ++ K + L
Sbjct: 135 AQRL-KTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA--RDYLVPSRVHKGKFYALP 191
Query: 168 IAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKM 227
+P+L+ + L++ GF++ ++I K FR+E + PEFT I+ ++ + + E +
Sbjct: 192 QSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEAL 251
Query: 228 IKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFL 281
++ + ++ G D F +T EA ++Y ++ DL+N + L
Sbjct: 252 VRHLWLEVKGVDLGD-----------FPVMTFAEAERRYGS--DKPDLRNPMEL 292
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 310 LFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDP 369
+FE+ E L + P +++ K+ EN + +++ I G E+ G +++
Sbjct: 435 MFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENA-VANAYDMVINGYEVGGGSVRIHNG 493
Query: 370 EEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNI 429
+ Q F + + E E + + AL+YG PP +G G+DRL MLLT + NI
Sbjct: 494 DMQQTVF-GILGINEEEQREKFGFL----LDALKYGTPPHAGLAFGLDRLTMLLTGTDNI 548
Query: 430 RDVILFP 436
RDVI FP
Sbjct: 549 RDVIAFP 555
>pdb|1KRS|A Chain A, Solution Structure Of The Anticodon Binding Domain Of
Escherichia Coli Lysyl-Trna Synthetase And Studies Of
Its Interactions With Trna-Lys
pdb|1KRT|A Chain A, Solution Structure Of The Anticodon Binding Domain Of
Escherichia Coli Lysyl-Trna Synthetase And Studies Of
Its Interactions With Trna-Lys
Length = 120
Score = 82.8 bits (203), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 58/80 (72%), Gaps = 6/80 (7%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTD-FKNYDIGDIIGAKGTLF 59
M +R+MGK SF+ LQD G +IQLY++ + + + +Y + FK +D+GDI+GAKG LF
Sbjct: 46 MTRRIMGKASFVTLQDVGG-----RIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLF 100
Query: 60 KTNTGELSIKVSSLKLITKS 79
KT TGELSI + L+L+TK+
Sbjct: 101 KTKTGELSIHCTELRLLTKA 120
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 149/365 (40%), Gaps = 62/365 (16%)
Query: 92 NQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAK 151
N + + +R IDL N + +F+ + + R ++ F EV TP L P +
Sbjct: 157 NLDTRLDYRVIDLRTVTN-QAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSS 215
Query: 152 PF-ITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGI-SPRHNPEFTMIE 209
F +T+ K +L +P+ ++LI+ F +++EI FR E + RH EFT ++
Sbjct: 216 VFEVTYFKG---KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLD 272
Query: 210 FYAAYTNY----------IWLMKFTEKMIKKIIMDC--------IGTTKIDYQGRLLDFS 251
A+ + +++ F+E + K+ + + K+ G+++ +
Sbjct: 273 MEMAFEEHYHEVLDTLSELFVFIFSE-LPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLT 331
Query: 252 KSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXXXXXXXXXXXXXMLF 311
E + ++ A K + ++ +N+ FL L
Sbjct: 332 YK-EGIEMLRAAGKEIGDFEDLSTENEKFLGK--------------------------LV 364
Query: 312 EETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEE 371
+ +T + + +P EI P + N + ++ F+ G EI +G ++D
Sbjct: 365 RDKYDTDFY---ILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHAL 421
Query: 372 QSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRD 431
R K L E G DY YG PP +G GIG++R++M + KNIR
Sbjct: 422 LQERMKAH-GLSPEDPGL------KDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRR 474
Query: 432 VILFP 436
LFP
Sbjct: 475 ASLFP 479
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 149/365 (40%), Gaps = 62/365 (16%)
Query: 92 NQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAK 151
N + + +R IDL N + +F+ + + R ++ F EV TP L P +
Sbjct: 160 NLDTRLDYRVIDLRTVTN-QAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSS 218
Query: 152 PF-ITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGI-SPRHNPEFTMIE 209
F +T+ K +L +P+ ++LI+ F +++EI FR E + RH EFT ++
Sbjct: 219 VFEVTYFKG---KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLD 275
Query: 210 FYAAYTNY----------IWLMKFTEKMIKKIIMDC--------IGTTKIDYQGRLLDFS 251
A+ + +++ F+E + K+ + + K+ G+++ +
Sbjct: 276 MEMAFEEHYHEVLDTLSELFVFIFSE-LPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLT 334
Query: 252 KSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXXXXXXXXXXXXXMLF 311
E + ++ A K + ++ +N+ FL L
Sbjct: 335 YK-EGIEMLRAAGKEIGDFEDLSTENEKFLGK--------------------------LV 367
Query: 312 EETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEE 371
+ +T + + +P EI P + N + ++ F+ G EI +G ++D
Sbjct: 368 RDKYDTDFY---ILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHAL 424
Query: 372 QSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRD 431
R K L E G DY YG PP +G GIG++R++M + KNIR
Sbjct: 425 LQERMKAH-GLSPEDPGL------KDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRR 477
Query: 432 VILFP 436
LFP
Sbjct: 478 ASLFP 482
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 110/222 (49%), Gaps = 17/222 (7%)
Query: 21 DSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLF---------KTNTGELSIKVS 71
D +G +Q+ I + ++ + ++ GT+ K TGE+ IKV
Sbjct: 46 DFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVK 105
Query: 72 SLKLITKSLRPLPNKFQKL--SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFME 129
+ +L+ + + LP + + + ++ ++RY+DL + + + R+Q++ +R ++
Sbjct: 106 TAELLN-ACKKLPFEIKNFVKKTEALRLQYRYLDLR-SFQMQYNLRLRSQMVMKMREYLC 163
Query: 130 K-NDFMEVETPILHNK-PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFE 187
+ F+++ETP L + PGGA K F+ L +P+ + + L++GG ++ F+
Sbjct: 164 NLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQ 221
Query: 188 INKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIK 229
+ + +R+EG P PEFT I+ ++ + + E +++
Sbjct: 222 VARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQ 263
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 347 TERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGM 406
++ ++L + GNEI G +++ E Q R+ LK ++ + + AL+YG
Sbjct: 485 SQHYDLVLNGNEIGGGSIRIHNAELQ--RYILATLLKEDVK------MLSHLLQALDYGA 536
Query: 407 PPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
PP G +G+DRLI L+T S +IRDVI FP
Sbjct: 537 PPHGGIALGLDRLICLVTGSPSIRDVIAFP 566
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 167/376 (44%), Gaps = 41/376 (10%)
Query: 66 LSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIR 125
L ++V+ K+I +S L N K S+ K ++R+I +I +E+T++V + R++I R
Sbjct: 109 LEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHI-VIRSEHTQQVLQLRSEIQWYFR 167
Query: 126 HFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKI 185
+ N F E++ P + + F + N +L + +LYL+ +I K
Sbjct: 168 KYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQY--FNEPAYLTQSSQLYLES-VIASLGKS 224
Query: 186 FEINKNFRNE-GISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGT--TKID 242
F + ++R E + RH E+ +E + ++ L+ E ++ +I + + KI
Sbjct: 225 FCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIR 284
Query: 243 YQGRLLDF-SKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFXXXXXXXXX 301
L ++ F+++T +AI KY + ++ ++K F E P
Sbjct: 285 KMNPHLKLPTRPFKRMTYADAI-KYCNDHGILN-KDKPFEYGEDISEKP----------- 331
Query: 302 XXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIA 360
E ++ P ++ ++P+++ + ++TE +L + G EI
Sbjct: 332 ----------ERQMTDEIGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIV 381
Query: 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
G + + +E +K N +N + YY Y +YG P G G+GV+RL+
Sbjct: 382 GGSMRIWNYDELMGAYK-----ANGLNPD--PYY--WYTQQRKYGSCPHGGYGLGVERLV 432
Query: 421 MLLTNSKNIRDVILFP 436
M L +IR V L+P
Sbjct: 433 MWLLGEDHIRKVCLYP 448
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 95/181 (52%), Gaps = 20/181 (11%)
Query: 114 FKKRTQIISSIRHFMEKNDFMEVETPIL-HNKPGGAIAKPF-ITHHNSLNMKMFLRIAPE 171
+ R ++I +I F+++ F++VETP L + P GA + F + + + + L +P+
Sbjct: 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA--RDFLVPYRHEPGLFYALPQSPQ 201
Query: 172 LYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231
L+ + L++ G ++ F+I + FR+E + P+FT ++ ++ +++ E+++ +
Sbjct: 202 LFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHV 261
Query: 232 IMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPK 291
+ +G ++ F +L+ EA+++Y ++ DL+ L ELK++ P
Sbjct: 262 FREALG----------VELPLPFPRLSYEEAMERYG--SDKPDLRFGL----ELKEVGPL 305
Query: 292 F 292
F
Sbjct: 306 F 306
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 312 EETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEE 371
EE T + +P + + +P ++ PL K + ++L + G E+ G ++DP
Sbjct: 434 EEEAWTYMHHP-FTSPHPEDL-PLLEKDPGRVRALA--YDLVLNGVEVGGGSIRIHDPRL 489
Query: 372 QSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRD 431
Q+ F+ + + E E ++ + ALEYG PP G G+DRL+ L+T S +IR+
Sbjct: 490 QARVFR-LLGIGEEEQREKFGFF----LEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE 544
Query: 432 VILFP 436
VI FP
Sbjct: 545 VIAFP 549
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 49/284 (17%)
Query: 165 FLRIAPELYLKRLIIGGFNKIFEINKNFRNE-GISPRHNPEFTMIEFYAAYTNYIWLMKF 223
FL + +LYL+ I +F I +++R E + RH E+ +E A +I L
Sbjct: 181 FLTQSSQLYLE-TCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVE---AECPFITLDDL 236
Query: 224 TEKMIKKIIMDCIGTTKIDYQGR-LLDF--------SKSFEKLTIIEAIKKYTPQYNEID 274
EK I++++ D + D + + LL+ + F ++ +AIK E +
Sbjct: 237 MEK-IEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENE 295
Query: 275 LQNKLFLKSELKKINPKFXXXXXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISP 334
N ++ + +F T+T + P + +P+EI
Sbjct: 296 FGNTFTYGEDIAEAAERF---------------------MTDT-INKPILLNRFPSEIKA 333
Query: 335 LARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKN-QIDLKNEINGELSS 392
+ + ++N +TE +L + G EI G + +E S FKN +ID K
Sbjct: 334 FYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK--------P 385
Query: 393 YYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
YY Y+ YG P G G+G++R I LTN+ +IRDV L+P
Sbjct: 386 YYW--YLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYP 427
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 49/284 (17%)
Query: 165 FLRIAPELYLKRLIIGGFNKIFEINKNFRNE-GISPRHNPEFTMIEFYAAYTNYIWLMKF 223
FL + +LYL+ I +F I +++R E + RH E+ +E A +I L
Sbjct: 183 FLTQSSQLYLE-TCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVE---AECPFITLDDL 238
Query: 224 TEKMIKKIIMDCIGTTKIDYQGR-LLDF--------SKSFEKLTIIEAIKKYTPQYNEID 274
EK I++++ D + D + + LL+ + F ++ +AIK E +
Sbjct: 239 MEK-IEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENE 297
Query: 275 LQNKLFLKSELKKINPKFXXXXXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISP 334
N ++ + +F T+T + P + +P+EI
Sbjct: 298 FGNTFTYGEDIAEAAERFM---------------------TDT-INKPILLNRFPSEIKA 335
Query: 335 LARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKN-QIDLKNEINGELSS 392
+ + ++N +TE +L + G EI G + +E S FKN +ID K
Sbjct: 336 FYMQRDAKDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK--------P 387
Query: 393 YYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
YY Y+ YG P G G+G++R I LTN+ +IRDV L+P
Sbjct: 388 YYW--YLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYP 429
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 97/445 (21%), Positives = 178/445 (40%), Gaps = 63/445 (14%)
Query: 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTL--FKTNT 63
+GK F+ ++D S G +Q ++ ++G+ + K + +G + +
Sbjct: 31 VGKKIFLWIRD-----STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAP 85
Query: 64 GELSIKVSSLKLITK-SLRPLPNKFQKLSNQEI-KYRHRYIDLIINENTRKVFKKRTQII 121
G + V L++I S P+P ++ S + + YRH +I + K + +I
Sbjct: 86 GGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIR---TPKASAIMKVKETLI 142
Query: 122 SSIRHFMEKNDFMEVETPILHNKP--GGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
+ R ++ K+ + EV PIL GGA + + +L + +LYL+ I
Sbjct: 143 MAAREWLLKDGWHEVFPPILVTGAVEGGAT----LFKLKYFDKYAYLSQSAQLYLEAAIF 198
Query: 180 GGFNKIFEINKNFRNE-GISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGT 238
G K++ + +FR E + RH EF +E AA+ + +MK E+++ ++ +
Sbjct: 199 G-LEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLEL 257
Query: 239 TKIDYQGRLLDFS------KSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKF 292
K + + D + F +++ EAI + ++ + L E
Sbjct: 258 RKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKGVNVEWGDDLGADEE-------- 309
Query: 293 XXXXXXXXXXXXXXXXMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFEL 352
+L EE P ++ YP I K + N+ +
Sbjct: 310 ---------------RVLTEEFD-----RPFFVYGYPKHIKAFYMKED--PNDPRKVLAS 347
Query: 353 FIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHAL-EYGMPPASG 411
++ E G+ E+ S R + L N I E D ++ L YG P SG
Sbjct: 348 DMLAPE---GYGEIIG---GSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSG 401
Query: 412 CGIGVDRLIMLLTNSKNIRDVILFP 436
G+GV+RL+ + +IR LFP
Sbjct: 402 FGLGVERLVAWVLKLDHIRWAALFP 426
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 312 EETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEE 371
+E ++ P +I N P E + E N + + ++L + G+ E++ E
Sbjct: 173 DEKASMEMEEPFWIVNIPREFY------DREENGVWKNYDLIL-----PYGYGEVSSGGE 221
Query: 372 QSVRFKNQIDLKNEINGELSSYYDTDYIHALEYG-MPPASGCGIGVDRLIMLLTNSKNIR 430
+ ++ + + S+ Y+ G + P++G GIGV+RL+ + +K+I
Sbjct: 222 REWEYEKIVAKIRAAGLKEDSF--RPYLEIARAGKLKPSAGAGIGVERLVRFIVGAKHIA 279
Query: 431 DVILFPHL 438
+V FP +
Sbjct: 280 EVQPFPRV 287
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 49 GDIIGAKGTLFKTNTGELSIKVSSLKLIT-KSLRPLPNKFQKLSNQEIKYRHRYIDLIIN 107
G + + L K+ T L + ++ I+ S +P F++L ++ + R + + I
Sbjct: 18 GSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKP----FRELESELLSRRKKDLQQIYA 73
Query: 108 ENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMF-- 165
E K + I+ R F+++ F+E+++PIL P I + I + L+ ++F
Sbjct: 74 EERENYLGKLEREIT--RFFVDRG-FLEIKSPIL--IPLEYIERMGIDNDTELSKQIFRV 128
Query: 166 -----LR--IAPELY--LKRL--IIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAY 214
LR +AP LY L++L + KIFEI +R E H EFTM+ F
Sbjct: 129 DKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMG 188
Query: 215 TNYIWLMKFTEKMIKKIIMDCIGTTKIDYQ 244
+ T + ++ II D + ID++
Sbjct: 189 SG------CTRENLESIITDFLNHLGIDFK 212
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 49 GDIIGAKGTLFKTNTGELSIKVSSLKLIT-KSLRPLPNKFQKLSNQEIKYRHRYIDLIIN 107
G + + L K+ T L + ++ I+ S +P F++L ++ + R + + I
Sbjct: 18 GSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKP----FRELESELLSRRKKDLQQIYA 73
Query: 108 ENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMF-- 165
E K + I+ R F+++ F+E+++PIL P I + I + L+ ++F
Sbjct: 74 EERENYLGKLEREIT--RFFVDRG-FLEIKSPIL--IPLEYIERMGIDNDTELSKQIFRV 128
Query: 166 -----LR--IAPELY--LKRL--IIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAY 214
LR +AP LY L++L + KIFEI +R E H EFTM+ F
Sbjct: 129 DKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMG 188
Query: 215 TNYIWLMKFTEKMIKKIIMDCIGTTKIDYQ 244
+ T + ++ II D + ID++
Sbjct: 189 SG------CTRENLESIITDFLNHLGIDFK 212
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 24/171 (14%)
Query: 87 FQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPG 146
F++L ++ + R + + I E K + I+ R F+++ F+E+++PIL P
Sbjct: 52 FRELESELLSRRKKDLQQIYAEERENYLGKLEREIT--RFFVDRG-FLEIKSPIL--IPL 106
Query: 147 GAIAKPFITHHNSLNMKMF-------LR--IAPELY--LKRL--IIGGFNKIFEINKNFR 193
I + I + L+ ++F LR + P LY L++L + KIFEI +R
Sbjct: 107 EYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYR 166
Query: 194 NEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQ 244
E H EFTM+ F+ + T + ++ II D + ID++
Sbjct: 167 KESDGKEHLEEFTMLVFWQMGSGC------TRENLESIITDFLNHLGIDFK 211
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 408 PASGCGIGVDRLIMLLTNSKNIRDVILFPHL 438
P++G GIGV+RL+ + +K+I +V FP +
Sbjct: 257 PSAGAGIGVERLVRFIVGAKHIAEVQPFPRI 287
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 87 FQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPG 146
F++L ++ + R + + I E K + I+ R F+++ F+E+++PIL P
Sbjct: 53 FRELESELLSRRKKDLQQIYAEERENYLGKLEREIT--RFFVDRG-FLEIKSPIL--IPL 107
Query: 147 GAIAKPFITHHNSLNMKMF-------LR--IAPELY--LKRL--IIGGFNKIFEINKNFR 193
I + I + L+ ++F LR +AP LY L++L + KIFEI +R
Sbjct: 108 EYIERXGIDNDTELSKQIFRVDKNFCLRPXLAPNLYNYLRKLDRALPDPIKIFEIGPCYR 167
Query: 194 NEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQ 244
E H EFT + F + T + ++ II D + ID++
Sbjct: 168 KESDGKEHLEEFTXLNFCQXGSG------CTRENLESIITDFLNHLGIDFK 212
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 87 FQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPG 146
FQ + +Q + R+++ + R + + ++ H + F++V TP + K
Sbjct: 46 FQGIEHQLMSQGKRHLEQLRTVKHRPALLELEEKLAKALH---QQGFVQVVTPTIITK-- 100
Query: 147 GAIAK-------PFITHHNSLNMKMFLR--IAPELY-LKRLIIGGFNK---IFEINKNFR 193
A+AK P + L+ K LR +AP LY L R + ++K IFEI +R
Sbjct: 101 SALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYR 160
Query: 194 NEGISPRHNPEFTMI 208
E +H EFTM+
Sbjct: 161 KESQGAQHLNEFTML 175
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 87 FQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPG 146
FQ + +Q + R+++ + R + + ++ H + F++V TP + K
Sbjct: 66 FQGIEHQLMSQGKRHLEQLRTVKHRPALLELEEKLAKALH---QQGFVQVVTPTIITK-- 120
Query: 147 GAIAK-------PFITHHNSLNMKMFLR--IAPELY-LKRLIIGGFNK---IFEINKNFR 193
A+AK P + L+ K LR +AP LY L R + ++K IFEI +R
Sbjct: 121 SALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYR 180
Query: 194 NEGISPRHNPEFTMI 208
E +H EFTM+
Sbjct: 181 KESQGAQHLNEFTML 195
>pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU5|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU6|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
pdb|2DU6|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
Length = 534
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 403 EYGMP-PASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441
EY +P P G+GV+RL M+L ++R ++ +P + E
Sbjct: 316 EYDIPYPVMNLGLGVERLAMILYGYDDVRKMV-YPQIHGE 354
>pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU3|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
pdb|2DU4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
Length = 534
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 403 EYGMP-PASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441
EY +P P G+GV+RL M+L ++R ++ +P + E
Sbjct: 316 EYDIPYPVMNLGLGVERLAMILYGYDDVRKMV-YPQIHGE 354
>pdb|3T68|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea
pdb|3T6M|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea In The Zn Bound Form
Length = 268
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 7 GKISFIMLQDTSGPDSNGKIQ----LYISNEIIGKNLYTD-FKNYDIGDII--GAKGTLF 59
G I F++ D GP NG ++ L NE+I + + +GD++ G +G F
Sbjct: 127 GSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNGRRGGGF 186
Query: 60 KTNTG 64
T+TG
Sbjct: 187 LTDTG 191
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWL---MKFTEKMIKKIIMDCIGTTKID 242
F+ + I + P+ +++ + I + MK ++ I+ IIM G +
Sbjct: 31 FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMA 90
Query: 243 YQ----GRLLDFSKSFEKLTIIEAIKKYTP 268
+ G L F+K F+ I +A+KKY P
Sbjct: 91 QESKELGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 216 NYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDL 275
N W F K++ M G T D + + DFS + + T + +K+ +P N +DL
Sbjct: 86 NIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDL 145
Query: 276 QNK 278
+ K
Sbjct: 146 KGK 148
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWL---MKFTEKMIKKIIMDCIGTTKID 242
F+ + I + P+ +++ + I + MK ++ I+ IIM G +
Sbjct: 31 FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMI 90
Query: 243 YQ----GRLLDFSKSFEKLTIIEAIKKYTP 268
+ G L F+K F+ I +A+KKY P
Sbjct: 91 QESKELGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWL---MKFTEKMIKKIIMDCIGTTKID 242
F+ + I + P+ +++ + I + MK ++ I+ IIM G +
Sbjct: 29 FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMI 88
Query: 243 YQ----GRLLDFSKSFEKLTIIEAIKKYTP 268
+ G L F+K F+ I +A+KKY P
Sbjct: 89 QESKELGALTHFAKPFDIDEIRDAVKKYLP 118
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWL---MKFTEKMIKKIIMDCIGTTKID 242
F+ + I + P+ +++ + I + MK ++ I+ IIM G +
Sbjct: 33 FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMI 92
Query: 243 YQ----GRLLDFSKSFEKLTIIEAIKKYTP 268
+ G L F+K F+ I +A+KKY P
Sbjct: 93 QESKELGALTHFAKPFDIDEIRDAVKKYLP 122
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWL---MKFTEKMIKKIIMDCIGTTKID 242
F+ + I + P+ +++ + I + MK ++ I+ IIM G +
Sbjct: 31 FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMI 90
Query: 243 YQ----GRLLDFSKSFEKLTIIEAIKKYTP 268
+ G L F+K F+ I +A+KKY P
Sbjct: 91 QESKELGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWL---MKFTEKMIKKIIMDCIGTTKID 242
F+ + I + P+ +++ + I + MK ++ I+ IIM G +
Sbjct: 31 FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEIAKRMKVIDENIRVIIMTAYGELDMI 90
Query: 243 YQ----GRLLDFSKSFEKLTIIEAIKKYTP 268
+ G L F+K F+ I +A+KKY P
Sbjct: 91 QESKELGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWL---MKFTEKMIKKIIMDCIGTTKID 242
F+ + I + P+ +++ + I + MK ++ I+ IIM G +
Sbjct: 31 FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMI 90
Query: 243 YQ----GRLLDFSKSFEKLTIIEAIKKYTP 268
+ G L F+K F+ I +A+KKY P
Sbjct: 91 QESKELGALTAFAKPFDIDEIRDAVKKYLP 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,748,045
Number of Sequences: 62578
Number of extensions: 532191
Number of successful extensions: 1744
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1636
Number of HSP's gapped (non-prelim): 78
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)