Query psy8863
Match_columns 442
No_of_seqs 179 out of 1399
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:17:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12445 lysyl-tRNA synthetase 100.0 2E-109 3E-114 861.6 46.5 430 1-442 75-505 (505)
2 COG1190 LysU Lysyl-tRNA synthe 100.0 4E-110 8E-115 834.8 39.6 431 1-442 71-502 (502)
3 TIGR00499 lysS_bact lysyl-tRNA 100.0 3E-109 7E-114 859.4 46.5 429 1-441 63-495 (496)
4 PRK00484 lysS lysyl-tRNA synth 100.0 2E-108 4E-113 854.1 44.8 428 1-442 64-491 (491)
5 PLN02502 lysyl-tRNA synthetase 100.0 7E-107 2E-111 845.3 46.0 429 1-442 118-553 (553)
6 PTZ00417 lysine-tRNA ligase; P 100.0 1E-103 2E-108 824.1 44.6 428 1-442 142-585 (585)
7 PTZ00385 lysyl-tRNA synthetase 100.0 6E-103 1E-107 820.0 45.0 428 1-441 117-565 (659)
8 PRK02983 lysS lysyl-tRNA synth 100.0 7E-101 2E-105 855.0 45.7 428 1-442 661-1094(1094)
9 KOG1885|consensus 100.0 2.9E-99 6E-104 739.3 26.1 429 1-442 114-558 (560)
10 COG0017 AsnS Aspartyl/asparagi 100.0 1.3E-96 3E-101 734.5 34.9 394 2-441 27-432 (435)
11 TIGR00458 aspS_arch aspartyl-t 100.0 2.1E-95 5E-100 746.6 37.3 395 2-441 23-425 (428)
12 PRK05159 aspC aspartyl-tRNA sy 100.0 1.2E-94 2.7E-99 744.0 38.4 398 2-441 27-434 (437)
13 PTZ00401 aspartyl-tRNA synthet 100.0 1.4E-92 3.1E-97 737.6 39.3 400 2-441 89-547 (550)
14 PLN02850 aspartate-tRNA ligase 100.0 2.1E-92 4.6E-97 736.4 39.9 399 2-441 92-527 (530)
15 TIGR00459 aspS_bact aspartyl-t 100.0 3.9E-92 8.5E-97 736.6 38.6 412 2-441 26-556 (583)
16 TIGR00457 asnS asparaginyl-tRN 100.0 7.1E-91 1.5E-95 716.5 34.0 399 2-441 27-450 (453)
17 PLN02532 asparagine-tRNA synth 100.0 2.5E-90 5.3E-95 721.9 36.1 396 2-441 128-630 (633)
18 PRK03932 asnC asparaginyl-tRNA 100.0 1E-89 2.2E-94 708.8 35.5 397 2-441 27-447 (450)
19 PLN02603 asparaginyl-tRNA synt 100.0 7.2E-89 1.6E-93 709.8 35.5 396 2-441 118-562 (565)
20 PTZ00425 asparagine-tRNA ligas 100.0 9.8E-88 2.1E-92 699.5 37.4 396 2-441 92-583 (586)
21 PLN02221 asparaginyl-tRNA synt 100.0 1.5E-87 3.2E-92 699.8 36.6 397 2-441 61-569 (572)
22 COG0173 AspS Aspartyl-tRNA syn 100.0 1.7E-86 3.7E-91 667.1 36.0 413 2-441 26-559 (585)
23 PLN02903 aminoacyl-tRNA ligase 100.0 2E-84 4.3E-89 680.7 39.2 414 2-441 83-624 (652)
24 PRK00476 aspS aspartyl-tRNA sy 100.0 2.3E-84 5.1E-89 683.4 39.5 413 2-441 28-561 (588)
25 PRK12820 bifunctional aspartyl 100.0 4.9E-83 1.1E-87 676.3 39.7 413 2-441 29-577 (706)
26 cd00775 LysRS_core Lys_tRNA sy 100.0 1.9E-82 4.2E-87 631.0 34.6 326 107-440 1-329 (329)
27 KOG0556|consensus 100.0 1.3E-82 2.8E-87 612.5 26.3 393 3-441 94-530 (533)
28 KOG0554|consensus 100.0 4.5E-81 9.7E-86 602.3 28.4 387 2-441 31-443 (446)
29 PF00152 tRNA-synt_2: tRNA syn 100.0 4.1E-80 8.9E-85 619.0 22.4 329 92-439 1-334 (335)
30 TIGR00462 genX lysyl-tRNA synt 100.0 3.4E-77 7.3E-82 587.3 31.7 298 114-435 1-304 (304)
31 cd00776 AsxRS_core Asx tRNA sy 100.0 1.8E-77 3.8E-82 594.2 26.0 310 92-440 3-322 (322)
32 PRK06462 asparagine synthetase 100.0 3.8E-75 8.3E-80 579.7 28.6 311 91-441 8-332 (335)
33 KOG0555|consensus 100.0 2.2E-73 4.7E-78 546.7 25.4 393 2-439 134-540 (545)
34 KOG2411|consensus 100.0 7E-72 1.5E-76 549.5 32.7 412 3-441 59-600 (628)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 5.6E-72 1.2E-76 540.5 26.9 269 114-440 1-269 (269)
36 PRK09350 poxB regulator PoxA; 100.0 4.5E-71 9.7E-76 544.4 32.3 296 111-432 2-306 (306)
37 COG2269 Truncated, possibly in 100.0 3E-66 6.4E-71 481.6 23.3 302 111-439 13-321 (322)
38 cd00777 AspRS_core Asp tRNA sy 100.0 3.9E-66 8.4E-71 502.5 23.2 274 114-440 1-280 (280)
39 cd04322 LysRS_N LysRS_N: N-ter 99.8 6E-20 1.3E-24 154.0 10.7 98 2-104 10-108 (108)
40 PRK00488 pheS phenylalanyl-tRN 99.7 1.9E-17 4.2E-22 162.7 14.6 114 118-232 111-237 (339)
41 COG0016 PheS Phenylalanyl-tRNA 99.7 1.9E-17 4E-22 161.9 12.3 114 118-232 114-244 (335)
42 PF01409 tRNA-synt_2d: tRNA sy 99.7 7.6E-18 1.7E-22 160.8 9.4 113 119-232 21-154 (247)
43 PRK09537 pylS pyrolysyl-tRNA s 99.7 3.9E-17 8.4E-22 164.8 12.7 134 92-230 181-332 (417)
44 cd04317 EcAspRS_like_N EcAspRS 99.7 1.4E-16 3E-21 139.0 10.8 97 2-106 25-132 (135)
45 PLN02853 Probable phenylalanyl 99.7 4.1E-16 8.8E-21 159.4 13.1 111 119-230 225-392 (492)
46 PTZ00326 phenylalanyl-tRNA syn 99.7 1E-15 2.2E-20 157.3 14.2 109 119-230 233-407 (494)
47 cd04319 PhAsnRS_like_N PhAsnRS 99.6 1.5E-15 3.2E-20 126.2 11.3 92 2-102 10-103 (103)
48 TIGR02367 PylS pyrrolysyl-tRNA 99.6 1.9E-15 4.1E-20 152.1 12.7 113 116-228 241-366 (453)
49 cd00768 class_II_aaRS-like_cor 99.6 6.6E-15 1.4E-19 137.0 10.0 100 117-216 2-111 (211)
50 PTZ00213 asparagine synthetase 99.6 8.3E-13 1.8E-17 127.0 22.8 288 113-434 7-334 (348)
51 cd04320 AspRS_cyto_N AspRS_cyt 99.6 2.4E-14 5.2E-19 118.7 10.8 81 2-87 10-100 (102)
52 cd04316 ND_PkAspRS_like_N ND_P 99.6 3.1E-14 6.7E-19 119.3 11.1 81 2-87 23-105 (108)
53 cd00645 AsnA Asparagine synthe 99.5 6.3E-13 1.4E-17 126.4 20.6 264 120-434 3-298 (309)
54 PLN02788 phenylalanine-tRNA sy 99.5 5.5E-14 1.2E-18 141.6 13.5 95 119-214 72-179 (402)
55 PRK05425 asparagine synthetase 99.5 2.1E-12 4.6E-17 124.0 22.3 265 118-434 12-308 (327)
56 TIGR00669 asnA aspartate--ammo 99.4 1.7E-11 3.8E-16 117.5 21.6 272 114-434 5-315 (330)
57 TIGR00468 pheS phenylalanyl-tR 99.4 2.8E-12 6E-17 126.1 14.4 112 119-231 76-201 (294)
58 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.4 3.7E-12 8E-17 102.0 9.6 71 2-78 10-85 (85)
59 TIGR00469 pheS_mito phenylalan 99.4 5.8E-12 1.3E-16 128.0 12.8 95 120-215 47-166 (460)
60 cd04318 EcAsnRS_like_N EcAsnRS 99.4 5.4E-12 1.2E-16 100.3 9.8 71 2-78 10-82 (82)
61 cd04321 ScAspRS_mt_like_N ScAs 99.3 5.7E-12 1.2E-16 101.1 9.3 70 1-78 9-86 (86)
62 PRK04172 pheS phenylalanyl-tRN 99.3 2.4E-11 5.2E-16 127.7 15.7 116 115-230 233-400 (489)
63 cd04323 AsnRS_cyto_like_N AsnR 99.3 1.1E-11 2.4E-16 99.0 9.2 70 2-78 10-84 (84)
64 cd00773 HisRS-like_core Class 99.1 2.8E-08 6.2E-13 96.3 22.5 101 115-216 3-116 (261)
65 TIGR00470 sepS O-phosphoseryl- 99.0 8.6E-10 1.9E-14 111.5 9.0 51 181-231 206-259 (533)
66 cd00496 PheRS_alpha_core Pheny 99.0 1.4E-08 3E-13 95.8 16.1 111 119-231 5-131 (218)
67 PRK12293 hisZ ATP phosphoribos 98.8 8.4E-07 1.8E-11 86.8 19.6 109 114-231 19-139 (281)
68 COG0124 HisS Histidyl-tRNA syn 98.7 2.5E-07 5.5E-12 94.8 15.7 118 113-230 17-153 (429)
69 TIGR00443 hisZ_biosyn_reg ATP 98.7 6.4E-07 1.4E-11 89.2 17.8 114 114-229 8-138 (314)
70 PRK12421 ATP phosphoribosyltra 98.6 2.2E-06 4.7E-11 88.0 17.7 116 113-231 20-154 (392)
71 PRK12420 histidyl-tRNA synthet 98.5 7.2E-06 1.6E-10 85.1 19.4 115 113-230 17-151 (423)
72 PF00587 tRNA-synt_2b: tRNA sy 98.5 3.2E-07 6.9E-12 83.3 6.6 114 116-231 1-134 (173)
73 PF01336 tRNA_anti-codon: OB-f 98.4 1.5E-06 3.2E-11 67.0 9.0 64 4-76 12-75 (75)
74 cd00770 SerRS_core Seryl-tRNA 98.4 1.8E-06 3.9E-11 85.3 10.7 113 113-230 51-185 (297)
75 cd00670 Gly_His_Pro_Ser_Thr_tR 98.4 1.4E-06 2.9E-11 82.9 9.2 101 115-216 3-125 (235)
76 KOG2784|consensus 98.4 3.4E-07 7.5E-12 89.2 4.7 53 179-231 328-384 (483)
77 COG2502 AsnA Asparagine synthe 98.3 3.8E-05 8.1E-10 71.8 17.3 279 115-434 6-315 (330)
78 KOG2783|consensus 98.3 1.3E-06 2.9E-11 85.9 8.1 83 132-215 94-184 (436)
79 TIGR00442 hisS histidyl-tRNA s 98.3 2.7E-06 5.8E-11 87.5 9.7 101 113-216 13-131 (397)
80 cd00778 ProRS_core_arch_euk Pr 98.2 1.5E-06 3.3E-11 84.2 5.8 119 113-231 31-171 (261)
81 cd00772 ProRS_core Prolyl-tRNA 98.2 7.7E-06 1.7E-10 79.4 10.5 116 114-230 32-170 (264)
82 PRK00037 hisS histidyl-tRNA sy 98.2 5.3E-06 1.1E-10 85.8 9.8 101 113-216 17-132 (412)
83 cd00779 ProRS_core_prok Prolyl 98.2 3.7E-06 8E-11 81.3 7.6 117 113-230 30-164 (255)
84 cd00774 GlyRS-like_core Glycyl 98.1 5.9E-06 1.3E-10 79.8 7.3 97 113-215 31-143 (254)
85 PRK09194 prolyl-tRNA synthetas 98.0 2E-05 4.3E-10 84.7 10.0 122 113-235 46-188 (565)
86 PLN02972 Histidyl-tRNA synthet 98.0 3.1E-05 6.8E-10 84.3 10.0 118 112-230 339-470 (763)
87 cd00771 ThrRS_core Threonyl-tR 98.0 3.4E-05 7.3E-10 76.3 9.4 101 113-215 29-148 (298)
88 CHL00201 syh histidine-tRNA sy 97.9 4.3E-05 9.3E-10 79.5 10.0 116 114-230 18-154 (430)
89 PF13393 tRNA-synt_His: Histid 97.9 3.4E-05 7.4E-10 76.6 8.9 116 113-229 9-139 (311)
90 PRK14799 thrS threonyl-tRNA sy 97.9 3.4E-05 7.5E-10 82.0 9.3 119 112-233 166-303 (545)
91 PRK12292 hisZ ATP phosphoribos 97.9 3.1E-05 6.8E-10 79.5 8.8 116 113-231 16-151 (391)
92 TIGR00409 proS_fam_II prolyl-t 97.9 5.7E-05 1.2E-09 80.9 11.0 122 113-235 46-188 (568)
93 PLN02530 histidine-tRNA ligase 97.9 5.1E-05 1.1E-09 80.1 9.9 116 113-229 83-215 (487)
94 TIGR00414 serS seryl-tRNA synt 97.9 5.3E-05 1.1E-09 78.3 9.8 118 112-231 171-307 (418)
95 PLN02908 threonyl-tRNA synthet 97.9 4.1E-05 8.8E-10 84.1 9.1 119 112-233 319-456 (686)
96 PRK12305 thrS threonyl-tRNA sy 97.9 6.3E-05 1.4E-09 81.2 10.4 117 112-231 204-340 (575)
97 TIGR00408 proS_fam_I prolyl-tR 97.9 4.1E-05 8.8E-10 80.5 8.5 117 114-230 38-176 (472)
98 PRK08661 prolyl-tRNA synthetas 97.9 3.2E-05 6.9E-10 81.4 7.7 116 113-229 43-180 (477)
99 PRK12444 threonyl-tRNA synthet 97.8 7.3E-05 1.6E-09 81.6 9.8 115 114-230 274-406 (639)
100 PRK05431 seryl-tRNA synthetase 97.8 7.4E-05 1.6E-09 77.4 9.0 118 112-231 168-305 (425)
101 TIGR00418 thrS threonyl-tRNA s 97.8 9.7E-05 2.1E-09 79.5 9.8 113 113-227 199-330 (563)
102 PRK12325 prolyl-tRNA synthetas 97.8 8.9E-05 1.9E-09 77.3 8.8 117 113-230 46-180 (439)
103 PRK00413 thrS threonyl-tRNA sy 97.7 0.0002 4.3E-09 78.3 10.8 103 112-215 268-389 (638)
104 PRK03991 threonyl-tRNA synthet 97.5 0.00037 8E-09 75.3 10.0 120 112-233 225-364 (613)
105 PLN02837 threonine-tRNA ligase 97.5 0.00031 6.8E-09 76.2 9.5 118 112-231 245-381 (614)
106 PRK12295 hisZ ATP phosphoribos 97.4 0.00072 1.6E-08 68.9 9.7 109 118-231 8-133 (373)
107 PLN02678 seryl-tRNA synthetase 97.2 0.00049 1.1E-08 71.4 5.6 117 112-230 172-311 (448)
108 COG0172 SerS Seryl-tRNA synthe 97.2 0.0049 1.1E-07 63.1 12.7 117 113-230 173-307 (429)
109 PRK04173 glycyl-tRNA synthetas 97.1 0.0013 2.9E-08 68.7 8.2 48 183-231 187-237 (456)
110 PRK12294 hisZ ATP phosphoribos 97.0 0.0046 1E-07 60.2 10.2 104 112-224 5-119 (272)
111 COG0442 ProS Prolyl-tRNA synth 96.8 0.0051 1.1E-07 64.5 8.7 117 113-230 46-180 (500)
112 TIGR00415 serS_MJ seryl-tRNA s 96.6 0.0086 1.9E-07 62.5 9.3 118 113-231 222-387 (520)
113 COG2024 Phenylalanyl-tRNA synt 96.6 0.0013 2.8E-08 65.1 2.7 49 183-231 208-259 (536)
114 PLN02320 seryl-tRNA synthetase 96.5 0.0082 1.8E-07 63.0 8.0 116 114-231 233-368 (502)
115 PRK00960 seryl-tRNA synthetase 96.3 0.0083 1.8E-07 63.3 6.5 116 113-230 222-386 (517)
116 cd04487 RecJ_OBF2_like RecJ_OB 96.1 0.046 1E-06 42.2 8.1 61 6-76 13-73 (73)
117 cd04489 ExoVII_LU_OBF ExoVII_L 95.9 0.085 1.9E-06 40.7 9.1 57 8-74 17-75 (78)
118 PRK09616 pheT phenylalanyl-tRN 95.9 0.035 7.6E-07 59.7 9.2 113 118-230 362-488 (552)
119 cd00673 AlaRS_core Alanyl-tRNA 95.8 0.26 5.7E-06 46.4 13.5 96 119-230 3-109 (232)
120 COG0013 AlaS Alanyl-tRNA synth 95.4 0.17 3.7E-06 56.3 12.2 92 122-229 13-115 (879)
121 KOG1936|consensus 95.3 0.06 1.3E-06 54.6 7.8 102 113-214 73-184 (518)
122 cd04492 YhaM_OBF_like YhaM_OBF 95.3 0.18 3.9E-06 39.0 9.1 61 8-79 19-79 (83)
123 COG0441 ThrS Threonyl-tRNA syn 94.9 0.034 7.4E-07 59.5 5.2 111 115-234 221-356 (589)
124 TIGR03683 A-tRNA_syn_arch alan 94.8 0.16 3.5E-06 57.5 10.4 81 119-215 60-150 (902)
125 COG0423 GRS1 Glycyl-tRNA synth 94.8 0.058 1.2E-06 56.2 6.1 29 115-143 41-71 (558)
126 PRK13902 alaS alanyl-tRNA synt 94.7 0.13 2.7E-06 58.3 9.3 80 120-215 64-153 (900)
127 KOG2324|consensus 94.6 0.23 5E-06 49.4 9.5 121 113-235 51-190 (457)
128 COG3705 HisZ ATP phosphoribosy 94.6 0.16 3.4E-06 51.8 8.7 100 115-215 18-128 (390)
129 cd00769 PheRS_beta_core Phenyl 94.5 0.12 2.5E-06 47.9 7.1 109 119-230 4-136 (198)
130 TIGR00389 glyS_dimeric glycyl- 94.0 0.095 2.1E-06 55.8 5.9 29 115-143 38-67 (551)
131 PF13742 tRNA_anti_2: OB-fold 93.7 0.49 1.1E-05 38.7 8.5 59 6-74 37-98 (99)
132 cd04483 hOBFC1_like hOBFC1_lik 93.3 0.63 1.4E-05 37.6 8.3 65 4-74 10-90 (92)
133 PRK06253 O-phosphoseryl-tRNA s 93.1 0.83 1.8E-05 48.1 10.8 32 408-439 317-350 (529)
134 cd04485 DnaE_OBF DnaE_OBF: A s 93.0 0.29 6.2E-06 37.6 5.8 58 8-76 19-77 (84)
135 PRK00252 alaS alanyl-tRNA synt 92.9 0.46 1E-05 53.8 9.4 96 119-230 6-112 (865)
136 PRK14894 glycyl-tRNA synthetas 92.7 0.33 7E-06 50.9 7.2 99 115-214 41-200 (539)
137 cd04482 RPA2_OBF_like RPA2_OBF 92.0 1.2 2.7E-05 35.8 8.4 63 6-79 15-77 (91)
138 cd04478 RPA2_DBD_D RPA2_DBD_D: 91.1 2 4.4E-05 34.4 8.9 65 7-78 15-79 (95)
139 PLN02900 alanyl-tRNA synthetas 90.1 2.4 5.2E-05 48.4 11.3 96 119-230 15-130 (936)
140 PF03590 AsnA: Aspartate-ammon 89.9 4 8.7E-05 38.6 10.7 119 118-236 7-143 (244)
141 KOG2509|consensus 89.5 0.4 8.6E-06 48.9 4.1 119 112-230 183-327 (455)
142 TIGR00344 alaS alanine--tRNA l 89.0 2.1 4.5E-05 48.5 9.7 93 122-230 4-107 (851)
143 PF10451 Stn1: Telomere regula 88.8 1 2.2E-05 43.5 6.2 61 7-77 86-148 (256)
144 KOG1035|consensus 87.8 1.4 3.1E-05 50.6 7.2 116 113-231 931-1055(1351)
145 COG3111 Periplasmic protein wi 87.3 1.8 3.9E-05 36.6 5.9 53 12-76 75-127 (128)
146 cd03524 RPA2_OBF_family RPA2_O 86.8 4.9 0.00011 29.3 7.9 57 8-73 17-73 (75)
147 cd04490 PolII_SU_OBF PolII_SU_ 86.5 5.2 0.00011 31.2 7.9 52 7-72 17-71 (79)
148 KOG0188|consensus 85.9 1.8 3.9E-05 47.0 6.5 102 118-233 5-118 (895)
149 PRK06461 single-stranded DNA-b 84.4 5 0.00011 34.5 7.6 58 9-79 41-101 (129)
150 TIGR00471 pheT_arch phenylalan 83.4 3.2 6.9E-05 44.8 7.2 112 117-230 364-490 (551)
151 cd04491 SoSSB_OBF SoSSB_OBF: A 82.8 7.8 0.00017 30.1 7.5 54 7-73 22-76 (82)
152 PF04076 BOF: Bacterial OB fol 82.7 4.9 0.00011 33.2 6.5 51 12-74 52-102 (103)
153 PRK10053 hypothetical protein; 81.3 5.4 0.00012 34.3 6.5 51 12-74 79-129 (130)
154 PRK07080 hypothetical protein; 81.2 1.2 2.6E-05 43.9 2.8 47 184-231 153-201 (317)
155 TIGR00156 conserved hypothetic 80.3 6.7 0.00015 33.6 6.6 51 12-74 75-125 (126)
156 PRK13480 3'-5' exoribonuclease 76.9 9.8 0.00021 37.9 7.7 60 9-79 34-93 (314)
157 COG1571 Predicted DNA-binding 74.3 9.6 0.00021 39.2 7.0 61 5-77 282-342 (421)
158 PRK00036 primosomal replicatio 73.5 9.4 0.0002 31.7 5.5 51 24-79 47-99 (107)
159 PRK07373 DNA polymerase III su 72.2 11 0.00024 39.5 7.1 58 8-76 302-360 (449)
160 cd04484 polC_OBF polC_OBF: A s 71.9 33 0.00071 26.8 8.2 59 7-74 19-80 (82)
161 PLN02734 glycyl-tRNA synthetas 71.6 1.6 3.4E-05 47.7 0.7 31 184-214 277-310 (684)
162 COG4085 Predicted RNA-binding 71.3 12 0.00027 34.1 6.2 59 5-71 67-128 (204)
163 cd04488 RecG_wedge_OBF RecG_we 70.6 28 0.0006 25.6 7.4 51 8-69 18-68 (75)
164 PLN02265 probable phenylalanyl 70.4 11 0.00025 41.0 6.9 112 117-230 399-527 (597)
165 COG0752 GlyQ Glycyl-tRNA synth 70.3 5.1 0.00011 38.0 3.6 59 345-435 126-184 (298)
166 PRK12292 hisZ ATP phosphoribos 67.7 5.8 0.00012 40.8 3.8 16 407-422 304-319 (391)
167 PRK06826 dnaE DNA polymerase I 67.2 14 0.0003 43.4 7.1 61 8-78 1013-1074(1151)
168 PRK05672 dnaE2 error-prone DNA 66.8 14 0.00031 42.9 7.0 60 8-78 973-1033(1046)
169 PRK05673 dnaE DNA polymerase I 65.4 14 0.0003 43.3 6.7 60 8-78 999-1059(1135)
170 PRK14699 replication factor A; 64.5 18 0.0004 38.2 6.9 63 8-81 94-158 (484)
171 PLN02972 Histidyl-tRNA synthet 63.7 8.8 0.00019 42.7 4.4 20 406-425 636-655 (763)
172 PRK15491 replication factor A; 63.6 22 0.00048 36.4 7.1 64 7-81 93-158 (374)
173 CHL00201 syh histidine-tRNA sy 63.5 8.9 0.00019 39.9 4.3 18 408-425 300-317 (430)
174 cd04474 RPA1_DBD_A RPA1_DBD_A: 63.4 20 0.00044 29.3 5.6 57 6-71 33-97 (104)
175 TIGR00442 hisS histidyl-tRNA s 61.5 11 0.00024 38.5 4.6 19 407-425 294-312 (397)
176 PRK02801 primosomal replicatio 61.0 32 0.00069 28.1 6.3 46 26-76 50-100 (101)
177 PRK06920 dnaE DNA polymerase I 59.6 21 0.00046 41.7 6.7 59 8-77 965-1024(1107)
178 cd04496 SSB_OBF SSB_OBF: A sub 58.8 25 0.00054 27.9 5.4 48 24-75 44-99 (100)
179 PRK07279 dnaE DNA polymerase I 58.4 24 0.00052 40.9 6.8 56 8-74 907-963 (1034)
180 PRK07374 dnaE DNA polymerase I 58.1 25 0.00054 41.4 7.0 59 8-77 1022-1081(1170)
181 TIGR00472 pheT_bact phenylalan 57.9 28 0.0006 39.4 7.3 109 122-231 498-629 (798)
182 PF00436 SSB: Single-strand bi 56.7 17 0.00036 29.3 4.0 48 25-76 49-104 (104)
183 PRK07275 single-stranded DNA-b 56.6 24 0.00053 31.6 5.3 52 24-79 47-106 (162)
184 PRK07218 replication factor A; 56.1 47 0.001 34.6 8.0 56 9-78 198-253 (423)
185 COG0072 PheT Phenylalanyl-tRNA 55.3 34 0.00073 37.8 7.2 114 116-232 352-488 (650)
186 COG1570 XseA Exonuclease VII, 54.8 45 0.00098 34.7 7.5 57 9-75 42-100 (440)
187 PRK06752 single-stranded DNA-b 54.8 32 0.00069 28.6 5.4 37 43-79 62-106 (112)
188 PF04057 Rep-A_N: Replication 53.3 1.1E+02 0.0023 25.1 8.2 58 12-77 42-100 (101)
189 PRK00037 hisS histidyl-tRNA sy 53.2 18 0.0004 37.2 4.5 20 407-426 295-314 (412)
190 PRK06863 single-stranded DNA-b 52.8 31 0.00067 31.1 5.3 51 25-79 53-111 (168)
191 cd04486 YhcR_OBF_like YhcR_OBF 52.7 26 0.00056 27.2 4.2 33 44-77 43-76 (78)
192 PRK08486 single-stranded DNA-b 52.4 30 0.00066 31.6 5.3 51 25-79 50-108 (182)
193 PRK06751 single-stranded DNA-b 52.3 37 0.0008 30.8 5.8 50 25-78 48-105 (173)
194 PRK14908 glycyl-tRNA synthetas 52.0 10 0.00022 43.5 2.5 59 345-435 126-184 (1000)
195 PRK12366 replication factor A; 51.1 39 0.00086 37.1 6.9 59 9-79 212-270 (637)
196 PRK14699 replication factor A; 50.6 55 0.0012 34.7 7.6 63 8-80 203-267 (484)
197 PRK07211 replication factor A; 50.3 54 0.0012 34.7 7.4 64 7-80 197-260 (485)
198 PRK06958 single-stranded DNA-b 49.9 35 0.00075 31.2 5.2 37 43-79 67-111 (182)
199 cd00733 GlyRS_alpha_core Class 49.6 12 0.00026 35.8 2.2 29 406-434 150-178 (279)
200 PF02091 tRNA-synt_2e: Glycyl- 49.0 12 0.00025 36.0 2.0 28 407-434 150-177 (284)
201 PRK00629 pheT phenylalanyl-tRN 48.4 45 0.00097 37.7 7.0 112 119-231 491-622 (791)
202 PRK09348 glyQ glycyl-tRNA synt 48.2 13 0.00028 35.6 2.2 30 406-435 154-183 (283)
203 PRK12295 hisZ ATP phosphoribos 47.7 20 0.00044 36.6 3.8 15 408-422 356-370 (373)
204 CHL00192 syfB phenylalanyl-tRN 47.5 49 0.0011 36.9 7.0 113 118-231 401-530 (704)
205 COG5235 RFA2 Single-stranded D 47.0 69 0.0015 29.8 6.6 63 4-74 79-141 (258)
206 PRK07459 single-stranded DNA-b 45.7 51 0.0011 27.9 5.3 52 24-79 44-104 (121)
207 PF15513 DUF4651: Domain of un 45.4 26 0.00055 26.1 2.9 23 115-137 2-24 (62)
208 PRK12366 replication factor A; 45.1 53 0.0011 36.1 6.7 56 7-72 99-154 (637)
209 PRK07211 replication factor A; 44.1 79 0.0017 33.5 7.5 58 6-73 89-146 (485)
210 PLN02530 histidine-tRNA ligase 43.8 32 0.00069 36.5 4.6 18 407-424 373-390 (487)
211 PRK00286 xseA exodeoxyribonucl 43.8 1.2E+02 0.0026 31.6 8.9 61 7-77 40-102 (438)
212 TIGR00621 ssb single stranded 43.5 57 0.0012 29.1 5.6 37 43-79 66-110 (164)
213 KOG2298|consensus 43.0 6.7 0.00015 40.7 -0.6 28 185-212 212-242 (599)
214 COG1107 Archaea-specific RecJ- 42.4 27 0.00058 37.4 3.6 60 7-76 229-288 (715)
215 PRK01584 alanyl-tRNA synthetas 41.8 69 0.0015 34.9 6.8 96 118-229 4-109 (594)
216 TIGR00237 xseA exodeoxyribonuc 41.8 1.2E+02 0.0025 31.8 8.4 58 8-75 35-94 (432)
217 PRK06293 single-stranded DNA-b 41.5 57 0.0012 29.2 5.2 51 25-79 44-102 (161)
218 PRK05813 single-stranded DNA-b 41.1 78 0.0017 29.9 6.3 51 24-79 148-210 (219)
219 TIGR00388 glyQ glycyl-tRNA syn 41.0 18 0.00039 34.8 2.0 29 407-435 152-180 (293)
220 PRK15491 replication factor A; 40.8 97 0.0021 31.7 7.4 63 8-80 203-267 (374)
221 KOG3108|consensus 40.7 1.2E+02 0.0026 29.5 7.6 63 7-77 84-146 (265)
222 PRK07217 replication factor A; 40.4 1.8E+02 0.0039 28.9 8.9 66 7-84 100-166 (311)
223 PRK06386 replication factor A; 40.0 1.6E+02 0.0034 30.0 8.6 57 8-80 142-198 (358)
224 PRK08402 replication factor A; 39.7 80 0.0017 32.1 6.5 57 9-74 100-157 (355)
225 PF15072 DUF4539: Domain of un 38.5 71 0.0015 25.4 4.8 43 6-57 17-59 (86)
226 PF01411 tRNA-synt_2c: tRNA sy 37.9 24 0.00052 38.1 2.6 93 120-229 2-111 (552)
227 cd04479 RPA3 RPA3: A subfamily 36.9 1.4E+02 0.0029 24.3 6.4 41 24-78 40-80 (101)
228 PRK08763 single-stranded DNA-b 36.3 56 0.0012 29.3 4.3 36 44-79 68-111 (164)
229 PRK08182 single-stranded DNA-b 34.0 90 0.002 27.4 5.2 51 25-79 55-113 (148)
230 PF13393 tRNA-synt_His: Histid 32.8 27 0.00058 34.3 1.9 14 406-419 298-311 (311)
231 PRK07218 replication factor A; 32.2 1.3E+02 0.0029 31.2 6.9 51 8-73 93-143 (423)
232 PRK05813 single-stranded DNA-b 30.9 1.7E+02 0.0037 27.6 6.8 54 20-79 43-103 (219)
233 cd04477 RPA1N RPA1N: A subfami 30.8 61 0.0013 26.3 3.3 57 12-76 40-96 (97)
234 PRK07274 single-stranded DNA-b 30.6 81 0.0017 27.0 4.3 36 43-78 62-104 (131)
235 PRK13732 single-stranded DNA-b 29.6 1.3E+02 0.0029 27.2 5.6 36 44-79 70-115 (175)
236 TIGR00418 thrS threonyl-tRNA s 29.4 26 0.00056 37.8 1.2 17 409-425 442-458 (563)
237 COG3390 Uncharacterized protei 28.6 76 0.0017 29.0 3.8 57 12-75 69-129 (196)
238 PRK09010 single-stranded DNA-b 28.6 1.3E+02 0.0028 27.3 5.4 37 43-79 69-116 (177)
239 PRK07080 hypothetical protein; 26.3 33 0.00071 34.1 1.2 23 405-427 276-299 (317)
240 PF15490 Ten1_2: Telomere-capp 25.3 3.5E+02 0.0076 22.9 7.1 67 2-74 23-94 (118)
241 COG2965 PriB Primosomal replic 24.8 2.5E+02 0.0055 22.9 5.7 32 44-75 66-101 (103)
242 KOG1637|consensus 24.4 61 0.0013 33.9 2.7 119 115-237 193-333 (560)
243 PRK07772 single-stranded DNA-b 24.2 1.2E+02 0.0027 27.7 4.5 45 25-73 54-106 (186)
244 TIGR00617 rpa1 replication fac 24.0 1.7E+02 0.0037 32.0 6.3 66 6-80 214-286 (608)
245 KOG2851|consensus 23.8 78 0.0017 31.9 3.2 55 166-220 62-122 (412)
246 PF04046 PSP: PSP; InterPro: 23.2 1.2E+02 0.0025 21.4 3.1 14 396-409 22-35 (48)
247 PRK01584 alanyl-tRNA synthetas 21.2 52 0.0011 35.7 1.6 28 408-435 224-251 (594)
248 TIGR01076 sortase_fam LPXTG-si 20.6 1.8E+02 0.0038 24.9 4.6 39 37-80 55-93 (136)
249 PF08259 Periviscerokin: Periv 20.0 47 0.001 15.9 0.4 7 432-438 5-11 (11)
250 PF12869 tRNA_anti-like: tRNA_ 20.0 1.7E+02 0.0037 25.0 4.4 46 10-61 87-132 (144)
No 1
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-109 Score=861.55 Aligned_cols=430 Identities=53% Similarity=0.954 Sum_probs=402.2
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhh-hhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYT-DFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
+++|.+||++|++|||++ +.||||++++..+++.|+ .+.+|+.||+|.|+|++.++++|++||.+++++||++|
T Consensus 75 ~~~R~~Gk~~F~~lrD~~-----g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~ 149 (505)
T PRK12445 75 MTRRIMGKASFVTLQDVG-----GRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKA 149 (505)
T ss_pred EEEecCCCcEEEEEEeCC-----ccEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecC
Confidence 478999999999999999 999999997766555564 46789999999999999999999999999999999999
Q ss_pred CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCC
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS 159 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~ 159 (442)
..|||.+++++++.++|+++||||+++|+..+++|++||++++++|+||.++||+||+||+|++++|||++++|.|++++
T Consensus 150 ~~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~ 229 (505)
T PRK12445 150 LRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNA 229 (505)
T ss_pred CCCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy8863 160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239 (442)
Q Consensus 160 ~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~ 239 (442)
++.++||+||||+|||+|+++|++||||||||||||++++||||||||||||++|+|++|+|+++|+||++++..+.+.+
T Consensus 230 ~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~ 309 (505)
T PRK12445 230 LDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT 309 (505)
T ss_pred CCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999877
Q ss_pred eeecCCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCC
Q psy8863 240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKL 319 (442)
Q Consensus 240 ~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~ 319 (442)
...+.+..++++.||+|+||.||++.+....++.+..+.+.+++.++++|+...+ .|++|+++.++++.++|+++
T Consensus 310 ~~~~~~~~i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~vE~~l 384 (505)
T PRK12445 310 KVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEK-----SWGLGRIVTEIFDEVAEAHL 384 (505)
T ss_pred ceecCceeccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHHHHHHHhhc
Confidence 7777666678889999999999999998334555566788899999999987765 68899999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHH
Q psy8863 320 WNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYI 399 (442)
Q Consensus 320 ~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl 399 (442)
.+|+||+|||.+++|||+.++ +||++++|||||++|+||+|||+|+|||++|+++|++++..+..|+++ ++.+|+|||
T Consensus 385 ~~P~Fv~dyP~~~splak~~~-~~p~~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e-~~~~de~yl 462 (505)
T PRK12445 385 IQPTFITEYPAEVSPLARRND-VNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDE-AMFYDEDYV 462 (505)
T ss_pred CCCEEEECCCchhCcccccCC-CCCCceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCc-cccchHHHH
Confidence 999999999999999998876 899999999999999999999999999999999999999888777776 777899999
Q ss_pred HHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863 400 HALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442 (442)
Q Consensus 400 ~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~ 442 (442)
+|++||+|||||||||||||+|++||.+|||||++||++++++
T Consensus 463 ~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~~ 505 (505)
T PRK12445 463 TALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK 505 (505)
T ss_pred HHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999864
No 2
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-110 Score=834.76 Aligned_cols=431 Identities=54% Similarity=0.907 Sum_probs=413.4
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhh-hcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTD-FKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~-~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
|++|.+||++|++|.|++ ++||++++++...++.|+. .+.++.||+|.|+|.+.+|++|+++|.|+++++|+||
T Consensus 71 ~~~R~~GK~~F~~i~d~~-----gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKs 145 (502)
T COG1190 71 MTIRNMGKASFADLQDGS-----GKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKS 145 (502)
T ss_pred eeecccCceeEEEEecCC-----ceEEEEEeccccchhhHHHHHhccccCCEEeeeeeeeecCCCceEEEEEEEeeeccc
Confidence 678999999999999999 9999999999888888874 5779999999999999999999999999999999999
Q ss_pred CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCC
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS 159 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~ 159 (442)
+.|||.|+||+++.+.|+|+||+|+..|+..+..|..||+++++||+||.++||+||+||+|.+.+|||.|+||.|++|.
T Consensus 146 L~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNa 225 (502)
T COG1190 146 LRPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNA 225 (502)
T ss_pred CCCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy8863 160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239 (442)
Q Consensus 160 ~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~ 239 (442)
++.++|||+|||+|||+|+++|++|||+||++||||+.|+||+|||||||+|++|+||+|+|+++|+|+++++.++.+..
T Consensus 226 ld~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~ 305 (502)
T COG1190 226 LDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTT 305 (502)
T ss_pred cCCceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCC
Q psy8863 240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKL 319 (442)
Q Consensus 240 ~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~ 319 (442)
.+.|.+..++|++||+|+++.+|+..+. |.+..++.+.+.+++.+++.++...+.. .|++|.++.++|+..+|+++
T Consensus 306 ~v~y~~~~id~~~pf~ri~m~dal~e~~-g~~~~~~~~~e~~~~~ak~~~i~~~~~~---~~~~g~ll~~lFe~~vE~~l 381 (502)
T COG1190 306 KVTYGGQEIDFSKPFKRITMVDALKEYL-GVDFDDLFDDEEAKELAKKHGIEVEKYG---TWGLGHLLNELFEELVEAKL 381 (502)
T ss_pred EEEECCEeEecCCCeeeeehHHHHHHHh-CccccccCCHHHHHHHHHHhCCCcCccc---cccHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999998 5544466788899999999998876521 28899999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHH
Q psy8863 320 WNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYI 399 (442)
Q Consensus 320 ~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl 399 (442)
.+|+||+|||.+++|+++.++ ++|++++||||+++|.|+||||.|+|||.+|++||++|+.++..|++| ++.+|++|+
T Consensus 382 iqPTFv~d~P~eiSPLak~~~-~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gdde-a~~~Dedfv 459 (502)
T COG1190 382 IQPTFVTDHPVEISPLAKRHR-SNPGLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDE-AMELDEDFV 459 (502)
T ss_pred cCCceeecCccccCccccCCC-CCcchhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCcc-ccccCHHHH
Confidence 999999999999999999999 899999999999999999999999999999999999999999999998 889999999
Q ss_pred HHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863 400 HALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442 (442)
Q Consensus 400 ~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~ 442 (442)
+|++|||||+||+|||||||+|+|||..+||||++||-+++.+
T Consensus 460 ~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP~mr~~~ 502 (502)
T COG1190 460 EALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRPEK 502 (502)
T ss_pred HHHhcCCCCCCCccccHHHHHHHHcCCCchhheecccccCCCC
Confidence 9999999999999999999999999999999999999999864
No 3
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=3.4e-109 Score=859.40 Aligned_cols=429 Identities=53% Similarity=0.896 Sum_probs=400.7
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhc-CCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFK-NYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~-~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
+++|.+||++|++|+|++ +.||+|++++..+++.++... .|+.||+|.|+|++.++++|++||.++++++|++|
T Consensus 63 ~~~R~~gk~~F~~l~D~~-----g~iQ~~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~gelel~~~~i~ilsk~ 137 (496)
T TIGR00499 63 MARRSMGKATFITLQDES-----GQIQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKA 137 (496)
T ss_pred EEEecCCCeEEEEEEcCC-----ccEEEEEECCcCcHHHHHHHHhcCCCCCEEEEEEEEEECCCCcEEEEeeEEEEEecC
Confidence 478999999999999999 999999998877666676665 48999999999999999999999999999999999
Q ss_pred CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCC
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS 159 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~ 159 (442)
..|||.+++++++.++|+++||||+|+|+..+++|++||.+++++|+||.++||+||+||+|++++|||++++|.|++++
T Consensus 138 ~~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~ 217 (496)
T TIGR00499 138 LRPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNA 217 (496)
T ss_pred CCCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy8863 160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239 (442)
Q Consensus 160 ~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~ 239 (442)
++.++||++|||+|||+++++|++||||||||||||++++||||||||||||++|+|++|+|+++|+||++++..+.+++
T Consensus 218 ~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~ 297 (496)
T TIGR00499 218 LDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTT 297 (496)
T ss_pred CCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeecCCcccccCCCccceeHHHHHHHHCC--CCCCcccCCHHHHHHHHHhcCCCC-CcccccccccHHHHHHHHHHhhhh
Q psy8863 240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTP--QYNEIDLQNKLFLKSELKKINPKF-NQKKILNNLKKDILQLMLFEETTE 316 (442)
Q Consensus 240 ~~~~~~~~~~~~~pf~rit~~ea~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~g~l~~~~~~~~~e 316 (442)
...+.+..++++.||+|+||.||++++.+ |++..++.+.+.++.+++++|+++ .. .+++|+++.++++.++|
T Consensus 298 ~~~~~~~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~ve 372 (496)
T TIGR00499 298 KITYGELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEK-----SLTLGHILNELFEQFLE 372 (496)
T ss_pred ceecCceeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCC-----CCCHHHHHHHHHHHHHH
Confidence 77777667888899999999999995532 777666677888999999999877 33 57899999999999999
Q ss_pred cCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcH
Q psy8863 317 TKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDT 396 (442)
Q Consensus 317 ~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~ 396 (442)
+++.+|+||+|||.+++||++.++ +||++++|||||++|+||+|||+|+|||++|+++|+++++.+..|+++ .+.+|+
T Consensus 373 ~~l~~P~fv~dyP~~~splak~~~-~~p~~~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~-~~~~de 450 (496)
T TIGR00499 373 HTLIQPTFITHYPAEISPLAKRNP-SNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDE-AQFVDE 450 (496)
T ss_pred hccCCCEEEECCchhcCcccccCC-CCCCeEEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCc-cccchH
Confidence 999999999999999999988766 899999999999999999999999999999999999998877777777 666789
Q ss_pred HHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 397 DYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 397 ~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
|||+|++||||||||||||||||+|++||.+|||||++||+++++
T Consensus 451 ~yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~~ 495 (496)
T TIGR00499 451 DFVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRPQ 495 (496)
T ss_pred HHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCCCCCCC
Confidence 999999999999999999999999999999999999999999975
No 4
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-108 Score=854.11 Aligned_cols=428 Identities=54% Similarity=0.938 Sum_probs=401.3
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
+++|.+||++|++|||++ +.||||++++..+++.|+.+++|+.||+|.|+|++.++++|++||.+++++||++|.
T Consensus 64 ~~~R~~g~~~Fi~lrD~~-----g~iQ~v~~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~vls~~~ 138 (491)
T PRK00484 64 MLKRVMGKASFATLQDGS-----GRIQLYVSKDDVGEEALEAFKKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSL 138 (491)
T ss_pred EEEecCCceEEEEEEcCC-----ccEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEeEEEEEeccC
Confidence 368999999999999999 999999998776667788888899999999999999999999999999999999999
Q ss_pred CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCC
Q psy8863 81 RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSL 160 (442)
Q Consensus 81 ~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~ 160 (442)
.|||++.+++.+.++|+++||||+|+|+.++++|++||.+++++|+||.++||+||+||+|+++++||++++|.|+++++
T Consensus 139 ~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~ 218 (491)
T PRK00484 139 RPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNAL 218 (491)
T ss_pred CCCCcccccccchhhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred CcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce
Q psy8863 161 NMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240 (442)
Q Consensus 161 ~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~ 240 (442)
+.++||+||||+|||+++++|++|||+||||||||++++||||||||||||++|.|++|+|+++|+|++++++.+.++..
T Consensus 219 ~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~ 298 (491)
T PRK00484 219 DIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTK 298 (491)
T ss_pred CCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred eecCCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCC
Q psy8863 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLW 320 (442)
Q Consensus 241 ~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~ 320 (442)
+.+.+..++++.||+||||.||++++. |+++.+ .+.+.+...++++++...+ .|++|+++.++++.++|+++.
T Consensus 299 i~~~~~~~~~~~pf~rity~eai~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~ve~~~~ 371 (491)
T PRK00484 299 VTYQGTEIDFGPPFKRLTMVDAIKEYT-GVDFDD-MTDEEARALAKELGIEVEK-----SWGLGKLINELFEEFVEPKLI 371 (491)
T ss_pred EecCCEeecCCCCceEEEHHHHHHHHh-CCCccc-CCHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHHHHHhhhhcC
Confidence 777777788889999999999999987 776543 3566778888888887665 689999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHH
Q psy8863 321 NPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIH 400 (442)
Q Consensus 321 ~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~ 400 (442)
+|+||+|||.+++|||+..+ +|+++++|||||++|+||+|||+|+|||++|+++|++++..+..++++ .+++|+|||+
T Consensus 372 ~P~Fi~dyP~~~~pf~k~~~-~~~~~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e-~~~~d~~yl~ 449 (491)
T PRK00484 372 QPTFITDYPVEISPLAKRHR-EDPGLTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDE-AMFMDEDFLR 449 (491)
T ss_pred CcEEEECCChHHhhhhccCC-CCCCeEEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCc-ccccHHHHHH
Confidence 99999999999999998776 899999999999999999999999999999999999999887777776 6778899999
Q ss_pred HHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863 401 ALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442 (442)
Q Consensus 401 ~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~ 442 (442)
|++||+|||||||||||||+|++||.+|||||++|||++++.
T Consensus 450 a~~~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP~~~~~~ 491 (491)
T PRK00484 450 ALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFPLMRPEK 491 (491)
T ss_pred HHHCCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCCCCCCCC
Confidence 999999999999999999999999999999999999999863
No 5
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=7.5e-107 Score=845.32 Aligned_cols=429 Identities=45% Similarity=0.767 Sum_probs=397.9
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCch--hhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKN--LYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~--~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
+++|.+||++|++|||++ +.||||++++..+++ .|..+ ..|+.||+|.|+|++.++++|++||.+++++||+
T Consensus 118 ~~~R~~Gk~~F~~LrD~~-----g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~t~~gelel~~~~i~vLs 192 (553)
T PLN02502 118 MAKRAFGKLAFYDLRDDG-----GKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLT 192 (553)
T ss_pred EEEecCCCeEEEEEecCC-----ccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEecCCCCEEEEEeEEEEEe
Confidence 478999999999999999 999999987765443 36665 4699999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc
Q psy8863 78 KSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH 157 (442)
Q Consensus 78 ~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~ 157 (442)
+|..|||.+++++.+.++|+++||||+++|+..+++|++||.++++||+||.++||+||+||+|++++|||++++|.|++
T Consensus 193 ~~l~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~ 272 (553)
T PLN02502 193 KCLLMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHH 272 (553)
T ss_pred ccCCCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhc
Q psy8863 158 NSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIG 237 (442)
Q Consensus 158 ~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~ 237 (442)
++++.++||+||||+|+|+|+++|++|||+||||||||++++||||||||||||++|+|++|+|+++|+||+++++.+.+
T Consensus 273 n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~ 352 (553)
T PLN02502 273 NDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTG 352 (553)
T ss_pred ccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCCccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHH----HHHHHHhcCCCCCcccccccccHHHHHHHHHHh
Q psy8863 238 TTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLF----LKSELKKINPKFNQKKILNNLKKDILQLMLFEE 313 (442)
Q Consensus 238 ~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 313 (442)
.+.+.|.+..+++..||+|+||.||++.+. |++++...+.++ +...+++.|+++.+ .+++|+++.++++.
T Consensus 353 ~~~~~~~~~~i~~~~p~~rit~~e~l~~~~-g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~l~~l~~~ 426 (553)
T PLN02502 353 SYKIKYHGIEIDFTPPFRRISMISLVEEAT-GIDFPADLKSDEANAYLIAACEKFDVKCPP-----PQTTGRLLNELFEE 426 (553)
T ss_pred ccccccCCccccCCCCceeccHHHHHHHHh-CCCCCcCCCHHHHHHHHHHHHHHcCCCCCC-----CCCHhHHHHHHHHH
Confidence 888888777889999999999999999998 666543223333 44566778887766 67899999999999
Q ss_pred hhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccC
Q psy8863 314 TTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSY 393 (442)
Q Consensus 314 ~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~ 393 (442)
++++++.+|+||+|||..++|||+..+ ++|++++|||||++|+||+|||+|+|||.+|+++|+++++.++.++++ .+.
T Consensus 427 ~ve~~l~~PtFV~dyP~~~splak~~~-~~p~~~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~-~~~ 504 (553)
T PLN02502 427 FLEETLVQPTFVLDHPVEMSPLAKPHR-SKPGLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDE-AMA 504 (553)
T ss_pred HHHhhcCCCEEEECCccccCcccccCC-CCCCeEEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCcc-ccc
Confidence 999999999999999999999999876 899999999999999999999999999999999999999988877776 777
Q ss_pred CcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863 394 YDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442 (442)
Q Consensus 394 ~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~ 442 (442)
+|++||+|++||||||||||||||||+|++||..|||||++||++++++
T Consensus 505 ~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~FP~~k~~~ 553 (553)
T PLN02502 505 LDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAFPAMKPQD 553 (553)
T ss_pred cHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeecCCcCCCCC
Confidence 8999999999999999999999999999999999999999999999864
No 6
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1e-103 Score=824.07 Aligned_cols=428 Identities=39% Similarity=0.650 Sum_probs=393.9
Q ss_pred CcccccC-CeEEEEEecCCCCCCCccEEEEEeCCccC--chhhhh-hcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 1 MLKRVMG-KISFIMLQDTSGPDSNGKIQLYISNEIIG--KNLYTD-FKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 1 ~~~R~~g-~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~--~~~~~~-~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
+++|.+| |++|++|+|.+ +.||||++++..+ ++.|+. .+.|+.||+|.|+|.+.++++|++||.++++++|
T Consensus 142 ~~~R~~G~k~~F~~L~d~~-----g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~~gel~i~~~~i~ll 216 (585)
T PTZ00417 142 MRVSASGQKLRFFDLVGDG-----AKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIIL 216 (585)
T ss_pred EeeecCCCCCEEEEEEeCC-----eeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCCCceEEEEEEEEEEE
Confidence 4789999 79999999999 8999999977432 445654 5789999999999999999999999999999999
Q ss_pred eccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeec
Q psy8863 77 TKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITH 156 (442)
Q Consensus 77 ~~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~ 156 (442)
++|..|+|.++ ++.+.++|+++||||+++|+..+++|++||++++++|+||.++||+||+||+|++++|||++++|.|+
T Consensus 217 sk~l~~lP~~~-g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~T~ 295 (585)
T PTZ00417 217 SPCLHMLPMKY-GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFITH 295 (585)
T ss_pred ecCCCCCCccc-CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEEec
Confidence 99999999998 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhh
Q psy8863 157 HNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCI 236 (442)
Q Consensus 157 ~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~ 236 (442)
+++++.++||++|||+|||+|+++|++||||||||||||++++||+|||||||||++|+||+|+|+++|+|+++++..+.
T Consensus 296 ~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~ 375 (585)
T PTZ00417 296 HNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLF 375 (585)
T ss_pred ccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCceeecCC-------cccccCCCccceeHHHHHHHHCCCCCCc----ccCCHHHHHHHHHhcCCCCCcccccccccHHH
Q psy8863 237 GTTKIDYQG-------RLLDFSKSFEKLTIIEAIKKYTPQYNEI----DLQNKLFLKSELKKINPKFNQKKILNNLKKDI 305 (442)
Q Consensus 237 ~~~~~~~~~-------~~~~~~~pf~rit~~ea~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~ 305 (442)
+...+.+.. ..+++..||+++||.||++.+. |+++. ...+.+++.+++++.|+++.. .++++.
T Consensus 376 g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~-g~~~~~~~~~~~~~~el~~~l~~~g~~~~~-----~~~~~~ 449 (585)
T PTZ00417 376 GTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLT-NTKLEQPFDSPETINKMINLIKENKIEMPN-----PPTAAK 449 (585)
T ss_pred CcceeeecccccccccccccCCCCceeccHHHHHHHHh-CCCccccccccCCHHHHHHHHHHcCCCCCC-----CCCHHH
Confidence 876655531 2467889999999999999998 66542 235678888899999987765 678999
Q ss_pred HHHHHHHhhhhcCCCC-cEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhh
Q psy8863 306 LQLMLFEETTETKLWN-PTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKN 384 (442)
Q Consensus 306 l~~~~~~~~~e~~~~~-p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~ 384 (442)
++.++++.++|+++.+ |+||+|||.+++|||+... +||++++|||||++|+||+|||+|+|||.+|++||+++++.|.
T Consensus 450 ~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPLak~~~-~dp~v~eRFELfi~G~EiangysELnDp~eQr~Rf~~q~~~r~ 528 (585)
T PTZ00417 450 LLDQLASHFIENKYPNKPFFIIEHPQIMSPLAKYHR-SKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDRE 528 (585)
T ss_pred HHHHHHHHHHHHhhCCCcEEEECCChhhCchhhhcC-CCCCeEEeEEeEECCEEEccCcchhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999875 9999999999999999766 7999999999999999999999999999999999999999887
Q ss_pred ccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863 385 EINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442 (442)
Q Consensus 385 ~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~ 442 (442)
.++++ ++++|++||+|++||||||||||||||||+|++||.+|||||++||++++++
T Consensus 529 ~g~~e-~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~~~ 585 (585)
T PTZ00417 529 KGDAE-AFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRPAN 585 (585)
T ss_pred cCCCc-ccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCCCC
Confidence 77777 7889999999999999999999999999999999999999999999999864
No 7
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.7e-103 Score=819.95 Aligned_cols=428 Identities=36% Similarity=0.615 Sum_probs=388.5
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCcc-Cchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEII-GKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~-~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
+++|.+||++|++|||++ +.||||++++.. +++.+..+ +.|+.||+|.|+|++.++++|++||+++++++|++
T Consensus 117 ~~~R~~Gk~~F~~LrD~~-----G~IQvv~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~v~~t~~GeleI~~~~i~lLsk 191 (659)
T PTZ00385 117 TSVRDIGKIIFVTIRSNG-----NELQVVGQVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQRGELSVAASRMLILSP 191 (659)
T ss_pred EeeeccCCeEEEEEEECC-----ceEEEEEECCccCCHHHHHHHHhCCCCCCEEEEEEEEEecCCceEEEEeeEEEEech
Confidence 478999999999999999 999999998764 55566655 57999999999999999999999999999999999
Q ss_pred cC--CCC--Cc--ccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCc
Q psy8863 79 SL--RPL--PN--KFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKP 152 (442)
Q Consensus 79 ~~--~~l--P~--~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~ 152 (442)
+. .++ |. +++++.+.++|+++||||||+|+..+++|++||+++++||+||.++||+||+||+|+++.+|+++++
T Consensus 192 a~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~p 271 (659)
T PTZ00385 192 YVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKS 271 (659)
T ss_pred hhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccc
Confidence 54 322 33 6688889999999999999999999999999999999999999999999999999998889999999
Q ss_pred eeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHH
Q psy8863 153 FITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKII 232 (442)
Q Consensus 153 f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~ 232 (442)
|.|++++++.++||+||||+|||+++++|++||||||||||||++++||+|||||||||++|.|++|+|+++|+|+++++
T Consensus 272 F~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~ 351 (659)
T PTZ00385 272 FVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLA 351 (659)
T ss_pred eEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCCccccccceeeeeecCCHHHHHHHHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCceeecC-----Cc--ccccCCCccceeHHHHHHHHCCCCCCc---ccCCHHHH---HHHHHhcCCCCCcccccc
Q psy8863 233 MDCIGTTKIDYQ-----GR--LLDFSKSFEKLTIIEAIKKYTPQYNEI---DLQNKLFL---KSELKKINPKFNQKKILN 299 (442)
Q Consensus 233 ~~~~~~~~~~~~-----~~--~~~~~~pf~rit~~ea~~~~~~~~~~~---~~~~~~~l---~~~~~~~~~~~~~~~~~~ 299 (442)
.++.+...+++. +. .+++..||+|+||.+++..+. |+++. ++.+.+.+ +..++++|+++..
T Consensus 352 ~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~-G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~----- 425 (659)
T PTZ00385 352 MRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMS-GVEFPPPNELNTPKGIAYMSVVMLRYNIPLPP----- 425 (659)
T ss_pred HHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHHHHh-CCCCCccccCCCHHHHHHHHHHHHHcCCCCCc-----
Confidence 999987776654 32 467888999999888887776 66653 34444444 5778889988766
Q ss_pred cccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhh
Q psy8863 300 NLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQ 379 (442)
Q Consensus 300 ~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~ 379 (442)
.+.+|.+++++|+.++++++.+|+||+|||.+++||++..+ +||++++|||||++|+||+|||+|+|||++|+++|+++
T Consensus 426 ~~~~g~~~~~lfe~~ve~~l~qPtFI~dyP~e~sPLak~~~-~dp~~teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q 504 (659)
T PTZ00385 426 VRTAAKMFEKLIDFFITDRVVEPTFVMDHPLFMSPLAKEQV-SRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQ 504 (659)
T ss_pred ccchhHHHHHHHHHHHHHhhCCcEEEeCCccccCcccccCC-CCCCeEEEEEEEeCCeEeeecccccCCHHHHHHHHHHH
Confidence 67889999999999999999999999999999999998766 89999999999999999999999999999999999999
Q ss_pred HHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 380 IDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 380 ~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+..+..++++ .+++|+|||+|++||||||||||||||||+|++||.+|||||++||+++++
T Consensus 505 ~~~k~~gd~e-a~~~DedfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~~ 565 (659)
T PTZ00385 505 LVDRQGGDEE-AMPLDETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQD 565 (659)
T ss_pred HHHHhcCCch-hhccHHHHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCcccccc
Confidence 9887777777 788999999999999999999999999999999999999999999999875
No 8
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.2e-101 Score=855.04 Aligned_cols=428 Identities=35% Similarity=0.620 Sum_probs=396.8
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
+++|.+||++|++|||++ +.||||++++..+++.++.. +.|+.||+|.|+|++.++++|++||.+++++++++|
T Consensus 661 ~~~R~~G~~~F~~lrD~~-----g~iQ~v~~~~~~~~~~~~~~~~~l~~gd~V~v~G~v~~t~~ge~ei~~~~i~ll~k~ 735 (1094)
T PRK02983 661 LRIRDYGGVLFADLRDWS-----GELQVLLDASRLEQGSLADFRAAVDLGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKC 735 (1094)
T ss_pred EEEeeCCCeEEEEEEeCC-----eeEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEEcCCCCEEEEEeEEEEEecc
Confidence 478999999999999999 99999999887655545443 569999999999999999999999999999999999
Q ss_pred CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCC
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS 159 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~ 159 (442)
..|||++++++++.++|+++||||+++|+..+++|++||++++++|+||.++||+||+||+|++++||+++++|.|++++
T Consensus 736 ~~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~ 815 (1094)
T PRK02983 736 LRPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINA 815 (1094)
T ss_pred CcCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy8863 160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239 (442)
Q Consensus 160 ~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~ 239 (442)
++.++||+||||+|||+++++|++||||||||||||++++||||||||||+|++|.||+|+|+++|+|++++++++.++.
T Consensus 816 ~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~ 895 (1094)
T PRK02983 816 YDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAP 895 (1094)
T ss_pred CCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred eeecCCc-----ccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhh
Q psy8863 240 KIDYQGR-----LLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEET 314 (442)
Q Consensus 240 ~~~~~~~-----~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 314 (442)
.+.+.+. .++++.||+|+||.||++++. |++.....+.+.+++.+++.|++..+ +++.|+++.++++.+
T Consensus 896 ~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~-g~~~~~~~~~~~l~~~~~~~~i~~~~-----~~~~~~l~~~l~~~~ 969 (1094)
T PRK02983 896 VVMRPDGDGVLEPVDISGPWPVVTVHDAVSEAL-GEEIDPDTPLAELRKLCDAAGIPYRT-----DWDAGAVVLELYEHL 969 (1094)
T ss_pred EEeeCCccccccccccCCCceEEEHHHHHHHHh-CCCCCCCCCHHHHHHHHHHcCCCCCC-----CCCHhHHHHHHHHHH
Confidence 5544322 367889999999999999887 77766567788899999998987765 688999999999999
Q ss_pred hhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCC
Q psy8863 315 TETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYY 394 (442)
Q Consensus 315 ~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~ 394 (442)
+|+++.+|+||+|||.+++||||.++ +||++++|||||++|+||+|||+|+|||++|+++|+++...+..++++ .+++
T Consensus 970 ve~~~~~P~Fv~dyP~~~spla~~~~-~~p~~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e-~~~~ 1047 (1094)
T PRK02983 970 VEDRTTFPTFYTDFPTSVSPLTRPHR-SDPGLAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPE-AMEL 1047 (1094)
T ss_pred HHhhcCCCEEEECCCcccccccccCC-CCCCeeEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChh-hccc
Confidence 99999999999999999999999877 899999999999999999999999999999999999887766666666 7889
Q ss_pred cHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863 395 DTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442 (442)
Q Consensus 395 d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~ 442 (442)
|+|||+|++||||||||||||+|||+|++||. |||||++||++++++
T Consensus 1048 De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~~~ 1094 (1094)
T PRK02983 1048 DEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKPRQ 1094 (1094)
T ss_pred cHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCCCC
Confidence 99999999999999999999999999999995 999999999999863
No 9
>KOG1885|consensus
Probab=100.00 E-value=2.9e-99 Score=739.31 Aligned_cols=429 Identities=42% Similarity=0.707 Sum_probs=400.4
Q ss_pred CcccccC-CeEEEEEecCCCCCCCccEEEEEeCCc-cCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 1 MLKRVMG-KISFIMLQDTSGPDSNGKIQLYISNEI-IGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 1 ~~~R~~g-~~~Fi~lrD~~~~~~~~~iQvv~~~~~-~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
+++|.+| |++|++|++++ .+|||+++++. .+++.|..+ +.|+.||+|.|+|.+.+|++|+++|.+.++.+|+
T Consensus 114 ~s~R~sGsKL~Fydl~~~g-----~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLs 188 (560)
T KOG1885|consen 114 HSKRESGSKLVFYDLHGDG-----VKLQVMANAKKITSEEDFEQLHKFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLS 188 (560)
T ss_pred eeeeccCCceEEEEEecCC-----eEEEEEEehhhcCCHHHHHHHHhhhhccCEEeeecCCCcCCCceEEEeecchheec
Confidence 3688888 99999999999 99999999876 556677655 6799999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc
Q psy8863 78 KSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH 157 (442)
Q Consensus 78 ~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~ 157 (442)
+|+.|||..+.++.+.|+|+++||+|+..|+..+..|++||+|++.||.||+++||+||+||+|...+|||.|+||.|++
T Consensus 189 pcLh~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~h 268 (560)
T KOG1885|consen 189 PCLHMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHH 268 (560)
T ss_pred chhccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhc
Q psy8863 158 NSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIG 237 (442)
Q Consensus 158 ~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~ 237 (442)
+-++.++|||++||||+|+|+++|++||||||+.||||++|.+|+||||.||+||+|+||+|+|+++|+|++.+++.+.+
T Consensus 269 ndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G 348 (560)
T KOG1885|consen 269 NDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITG 348 (560)
T ss_pred cccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCc-------ccccCCCccceeHHHHHHHHCCCCCCc---ccC---CHHHHHHHHHhcCCCCCcccccccccHH
Q psy8863 238 TTKIDYQGR-------LLDFSKSFEKLTIIEAIKKYTPQYNEI---DLQ---NKLFLKSELKKINPKFNQKKILNNLKKD 304 (442)
Q Consensus 238 ~~~~~~~~~-------~~~~~~pf~rit~~ea~~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~g 304 (442)
..++.|++. +++|+.||+||++.+.+++-. |++.+ ++. ..+.|..++...++.+++ ....+
T Consensus 349 ~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k~l-gi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~-----p~t~a 422 (560)
T KOG1885|consen 349 SYKITYHPNGPEEPELELDFTRPFRRIEMIEELEKEL-GIKLPPGSTLHTEETRELLKSLCVDEAVECPP-----PRTTA 422 (560)
T ss_pred ceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHHHh-CCCCCCccccCchhhHHHHHHHHHhcccCCCC-----cccHH
Confidence 999988763 478999999999999999888 67654 222 234566666777777766 67788
Q ss_pred HHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhh
Q psy8863 305 ILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKN 384 (442)
Q Consensus 305 ~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~ 384 (442)
.+++++++..+|+++..|+||+|+|..++|+++.+. +.+++++||||++.|-||||+|.|+|||..|+++|++|.+.+.
T Consensus 423 rlLdKLvg~flE~~cvnPTFi~~hP~imSPLAK~hr-s~~glteRFElFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~ 501 (560)
T KOG1885|consen 423 RLLDKLVGEFLEPTCVNPTFIIDHPQIMSPLAKYHR-SKAGLTERFELFIAGKEICNAYTELNDPVDQRQRFEQQARDKD 501 (560)
T ss_pred HHHHHHHhHhhccccCCCeeEcCCchhcCccccccc-cccchhhHHHHhhhhHHHhhhhhhhcCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999888 8899999999999999999999999999999999999999988
Q ss_pred ccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCCC
Q psy8863 385 EINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442 (442)
Q Consensus 385 ~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~~ 442 (442)
.|++| ++..|+.|+.|++||+||+||||+|||||+|+||+..|||+|++||-+++++
T Consensus 502 ~GDDE-a~~~De~Fc~ALEYGlPPtgGwGmGIDRL~MllTds~~I~EVL~Fp~mkp~~ 558 (560)
T KOG1885|consen 502 AGDDE-AQMVDEDFCTALEYGLPPTGGWGMGIDRLVMLLTDSNNIREVLLFPAMKPED 558 (560)
T ss_pred cCCcc-cccccHHHHHHHHcCCCCCCccccchhhhhhhhcCCcchhheeeccccChhc
Confidence 99998 8888999999999999999999999999999999999999999999998764
No 10
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-96 Score=734.51 Aligned_cols=394 Identities=27% Similarity=0.429 Sum_probs=334.2
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~~ 79 (442)
++|.+|+++|+.||||+ +.||||++++...++.++ +++|+.||+|.|+|+|++++. |++||++++++|++.+
T Consensus 27 ~~R~~g~i~Fi~lrDgs-----g~iQ~v~~~~~~~~~~~~-~~~L~~es~v~V~G~v~~~~~a~~g~El~v~~i~Vl~~a 100 (435)
T COG0017 27 NKRDLGKIIFLVLRDGS-----GFIQAVVPKNKVYEELFK-AKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEA 100 (435)
T ss_pred eecccCCeEEEEEEcCC-----cEEEEEEECCCCcHHHhh-hhcCCCccEEEEEEEEEcCCCCCCCEEEEEEEEEEeecc
Confidence 57999999999999999 999999998655667888 889999999999999998864 7899999999999999
Q ss_pred CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCC
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS 159 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~ 159 (442)
..|+|.+..+-++.++++++||||+| ++..+++||+||.+++++|+||.++||+||+||+|+++....+++.|.+ +|
T Consensus 101 ~~~~Pi~~~~~~~~e~lld~rhL~lR-~~~~~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v--~y 177 (435)
T COG0017 101 DPPYPIDKKEHSELETLLDNRHLDLR-TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV--DY 177 (435)
T ss_pred CCCCCcCcccccCHHHHHhchheecc-ccchHHHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE--ee
Confidence 65777766544468999999999997 8899999999999999999999999999999999997533333478876 58
Q ss_pred CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcC
Q psy8863 160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGT 238 (442)
Q Consensus 160 ~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~ 238 (442)
|+.++||+||||||+|+++++ ++|||+|||+||||+++| |||+||||+|+||+|++++|+|+++|+|++++++.+.++
T Consensus 178 f~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~ 256 (435)
T COG0017 178 FDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEE 256 (435)
T ss_pred cCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765 999999999999999997 999999999999999999999999999999999999988
Q ss_pred ce--eecCC---ccccc--CCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCC-CCcccccccccHHHHHHHH
Q psy8863 239 TK--IDYQG---RLLDF--SKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPK-FNQKKILNNLKKDILQLML 310 (442)
Q Consensus 239 ~~--~~~~~---~~~~~--~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~ 310 (442)
|. +++.+ ..+.. +.||+||||+||++++.+ .|.+ +.++++ ++ .++
T Consensus 257 ~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~-------------------~~~e~~~~GdD-----l~---~e~ 309 (435)
T COG0017 257 CADELEFLGRDNSELKRPESAPFPRITYKEAIEILEE-------------------KGFEKVEWGDD-----LG---TEH 309 (435)
T ss_pred hHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHh-------------------cCCcccCCCCc-----cC---CHH
Confidence 75 34443 22332 368999999999998763 1222 222211 11 122
Q ss_pred HHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHHHhhHHHhhccCCc
Q psy8863 311 FEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKNQIDLKNEINGE 389 (442)
Q Consensus 311 ~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e 389 (442)
...+.+.....|+||+|||++++||||+.++++|+++.+|||++|| +||+|||||+||++.+.++++++ ++.. +
T Consensus 310 Er~l~e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~----gl~~-e 384 (435)
T COG0017 310 ERYLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEK----GLDP-E 384 (435)
T ss_pred HHHHHHHhCCCcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHHc----CCCh-H
Confidence 2222333444579999999999999999987889999999999998 89999999999999988877654 4422 2
Q ss_pred cccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 390 LSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 390 ~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
. ++|||+++|||+|||||||||+|||+|++||++|||||+||||+++.
T Consensus 385 -~---~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r 432 (435)
T COG0017 385 -S---YEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGR 432 (435)
T ss_pred -H---hHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCC
Confidence 2 38999999999999999999999999999999999999999999864
No 11
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=2.1e-95 Score=746.55 Aligned_cols=395 Identities=26% Similarity=0.433 Sum_probs=338.5
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~~ 79 (442)
++|.+||++|++|||++ +.||||++++..++++++.+.+|+.||+|.|+|++.+++. |++||.+++++|+++|
T Consensus 23 ~~R~~g~~~Fi~lrd~~-----g~iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~~~i~vl~~~ 97 (428)
T TIGR00458 23 EIRDLGGLIFVLLRDRE-----GLIQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKEKAPGGFEIIPTKIEVINEA 97 (428)
T ss_pred EEecCCCcEEEEEEeCC-----eeEEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecCCCCCcEEEEEeEEEEEecC
Confidence 68999999999999999 9999999987777778888899999999999999998764 8999999999999999
Q ss_pred CCCCCccccc--CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc
Q psy8863 80 LRPLPNKFQK--LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH 157 (442)
Q Consensus 80 ~~~lP~~~~~--~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~ 157 (442)
..|+|.+..+ ..+.++|+++||||+| ++..+++|++||.+++++|+||.++||+||+||+|++++++.+++.|.+
T Consensus 98 ~~~lP~~~~~~~~~~~~~r~~~R~ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v-- 174 (428)
T TIGR00458 98 KEPLPLDPTEKVPAELDTRLDYRFLDLR-RPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPI-- 174 (428)
T ss_pred CCCCCCCccccCCCCHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeee--
Confidence 8889977643 2467899999999996 9999999999999999999999999999999999997654445567765
Q ss_pred CCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhh
Q psy8863 158 NSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCI 236 (442)
Q Consensus 158 ~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~ 236 (442)
.|+++++||+||||+|||+++++|++|||+||||||||++++ ||||||||||||++|+|++|+|+++|+|++++++.+.
T Consensus 175 ~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~ 254 (428)
T TIGR00458 175 TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVP 254 (428)
T ss_pred EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred cCceeecCCccccc---CCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHh
Q psy8863 237 GTTKIDYQGRLLDF---SKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEE 313 (442)
Q Consensus 237 ~~~~~~~~~~~~~~---~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 313 (442)
+++..++.....++ +.||+||||.||++.+.+ .|++... |..+....+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~-------------------~g~~~~~---------~~~l~~~~E~ 306 (428)
T TIGR00458 255 ERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANA-------------------KGVEIGW---------GEDLSTEAEK 306 (428)
T ss_pred hcchhhhhhcccccccCCCCceEEEHHHHHHHHHH-------------------cCCCCCC---------ccccchHHHH
Confidence 87654432222222 469999999999986542 2322221 1112223334
Q ss_pred hhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccC
Q psy8863 314 TTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSY 393 (442)
Q Consensus 314 ~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~ 393 (442)
.+...++.|+||+|||.+++|||++.++++|++++|||||++|+||+|||+|+||++++.++++++ +.++ .
T Consensus 307 ~l~~~~~~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~~~~~------g~~~-~-- 377 (428)
T TIGR00458 307 ALGEEMDGLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYRDLEISSGAQRIHLHDLLVERIKAK------GLNP-E-- 377 (428)
T ss_pred HHHHHhCCCEEEEeCchhcCcccccccCCCCCEEEEEEEEeCCeEEeeCchhcCCHHHHHHHHHHc------CCCh-H--
Confidence 445556789999999999999997665588999999999999999999999999999998887543 3333 2
Q ss_pred CcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 394 YDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 394 ~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
.++|||+|++||+|||||||||+|||+|+++|.+|||||++|||+++.
T Consensus 378 ~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r 425 (428)
T TIGR00458 378 GFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKR 425 (428)
T ss_pred HHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCC
Confidence 458999999999999999999999999999999999999999999864
No 12
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-94 Score=744.01 Aligned_cols=398 Identities=25% Similarity=0.438 Sum_probs=339.3
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~~ 79 (442)
++|.+||++|++|||++ +.||||++++.. ++.++.+++|+.||+|.|+|++.++++ +++||++++++|+++|
T Consensus 27 ~~R~~gk~~Fl~LrD~~-----g~iQ~v~~~~~~-~~~~~~~~~L~~gs~V~v~G~v~~~~~~~~~~el~~~~i~vls~a 100 (437)
T PRK05159 27 EIRDLGGIAFLILRDRS-----GIIQVVVKKKVD-EELFETIKKLKRESVVSVTGTVKANPKAPGGVEVIPEEIEVLNKA 100 (437)
T ss_pred eeecCCCeEEEEEEcCC-----cEEEEEEeCCcc-HHHHHHHhCCCCCcEEEEEEEEEcCCCCCCCEEEEEeEEEEEeCC
Confidence 68999999999999999 999999998755 567788899999999999999998876 7899999999999999
Q ss_pred CCCCCccccc--CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc
Q psy8863 80 LRPLPNKFQK--LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH 157 (442)
Q Consensus 80 ~~~lP~~~~~--~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~ 157 (442)
..++|....+ .++.+.|+++||||+| ++..+++|++||.+++++|+||.++||+||+||+|+++..+.+++.|.+
T Consensus 101 ~~~~P~~~~~~~~~~~~~~~~~r~Ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~-- 177 (437)
T PRK05159 101 EEPLPLDISGKVLAELDTRLDNRFLDLR-RPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI-- 177 (437)
T ss_pred CCCCCCCccccccCCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeE--
Confidence 8889976443 3467999999999994 9999999999999999999999999999999999986432223456654
Q ss_pred CCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCC-HHHHHHHHHHHHHHHHHHh
Q psy8863 158 NSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTN-YIWLMKFTEKMIKKIIMDC 235 (442)
Q Consensus 158 ~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~-~~dl~~~~e~li~~i~~~~ 235 (442)
+++++++||+||||+|||+++++|++|||+||||||||++++ ||+|||||||||++|.+ ++++|+++|++++++++++
T Consensus 178 ~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~ 257 (437)
T PRK05159 178 DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDV 257 (437)
T ss_pred EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999996 99999999999999998 9999999999999999999
Q ss_pred hcCce--eecCCcccc-cCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHH
Q psy8863 236 IGTTK--IDYQGRLLD-FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFE 312 (442)
Q Consensus 236 ~~~~~--~~~~~~~~~-~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 312 (442)
.+++. +.+.+..+. ++.||+||||.||++++.+ .|.+..+ ..+++.....++.
T Consensus 258 ~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~-------------------~~~~~~~-----~~~~~~~~e~~l~ 313 (437)
T PRK05159 258 AENCEKELELLGIELPVPETPIPRITYDEAIEILKS-------------------KGNEISW-----GDDLDTEGERLLG 313 (437)
T ss_pred HHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHH-------------------cCCCCCC-----CCCCCcHHHHHHH
Confidence 87653 223333232 4579999999999997752 1222222 1223334445555
Q ss_pred hhhhcCCCC-cEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccc
Q psy8863 313 ETTETKLWN-PTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELS 391 (442)
Q Consensus 313 ~~~e~~~~~-p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~ 391 (442)
..+++.++. |+||+|||.+++|||++.+++++++++|||||++|+||+|||+|+||+++|+++++++ +.++ .
T Consensus 314 ~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~Ei~~g~~r~~d~~~~~~~~~~~------g~~~-~ 386 (437)
T PRK05159 314 EYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGLEITSGGQRIHRYDMLVESIKEK------GLNP-E 386 (437)
T ss_pred HHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCEEEeeCeEEcCCHHHHHHHHHHc------CCCH-H
Confidence 566666655 8999999999999998776588999999999999999999999999999999998854 2333 1
Q ss_pred cCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 392 SYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 392 ~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
.++|||+|++||+|||||||||+|||+|+++|.+|||||++|||+++.
T Consensus 387 --~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~ 434 (437)
T PRK05159 387 --SFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHR 434 (437)
T ss_pred --HHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCC
Confidence 348999999999999999999999999999999999999999999863
No 13
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-92 Score=737.61 Aligned_cols=400 Identities=22% Similarity=0.400 Sum_probs=335.3
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCC-ccCchhhhhhcCCCCCcEEEEEEEEeec-------CCceeEEEEeEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNE-IIGKNLYTDFKNYDIGDIIGAKGTLFKT-------NTGELSIKVSSL 73 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~-~~~~~~~~~~~~L~~gs~V~V~G~v~~~-------~~~~~el~~~~i 73 (442)
++|.+||++|++|||++ ++||+|++.+ .+++++++++..|+.||+|.|+|+|.+. ..+++||+++++
T Consensus 89 ~~R~~Gk~~Fl~LRd~~-----~~iQ~v~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~~~El~v~~i 163 (550)
T PTZ00401 89 TTRKKGKMAFMVLRDGS-----DSVQAMAAVEGDVPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSDIELKVKKI 163 (550)
T ss_pred EEecCCCeEEEEEEeCC-----cCEEEEEECCCccCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCccEEEEeeEE
Confidence 68999999999999999 9999999754 3567788888999999999999999862 347899999999
Q ss_pred EEEeccCCCCCcccccC----------CchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec
Q psy8863 74 KLITKSLRPLPNKFQKL----------SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN 143 (442)
Q Consensus 74 ~vl~~~~~~lP~~~~~~----------~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~ 143 (442)
+|+++|..+||++..+. .+.++|+++||||+| ++..+++|++||.+++++|+||.++||+||+||+|++
T Consensus 164 ~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR-~~~~~~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~ 242 (550)
T PTZ00401 164 HTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLR-TPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIIN 242 (550)
T ss_pred EEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccc
Confidence 99999988899765432 257899999999997 8999999999999999999999999999999999997
Q ss_pred CCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccC-CHHHHH
Q psy8863 144 KPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYT-NYIWLM 221 (442)
Q Consensus 144 ~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~-~~~dl~ 221 (442)
++.+.+++.|.+ +||+.++||+||||+|+|+++++|++|||+||||||||++++ ||+||||||||||+|. +|+++|
T Consensus 243 ~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm 320 (550)
T PTZ00401 243 APSEGGANVFKL--EYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVL 320 (550)
T ss_pred CCCCcccccccc--ccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHH
Confidence 644445578875 588999999999999999998899999999999999999996 9999999999999985 799999
Q ss_pred HHHHHHHHHHHHHhhcCce-eecCCc-----c--------------cc------------------cCCCccceeHHHHH
Q psy8863 222 KFTEKMIKKIIMDCIGTTK-IDYQGR-----L--------------LD------------------FSKSFEKLTIIEAI 263 (442)
Q Consensus 222 ~~~e~li~~i~~~~~~~~~-~~~~~~-----~--------------~~------------------~~~pf~rit~~ea~ 263 (442)
+++|+|+++++..+.+.+. +++.+. . ++ ...||+||+|.||+
T Consensus 321 ~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~rl~y~eai 400 (550)
T PTZ00401 321 DLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSRMLRINYMHCI 400 (550)
T ss_pred HHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHhcCCCcccccHHHHH
Confidence 9999999999998876422 111100 0 00 12358889999998
Q ss_pred HHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEEc-CCCCCCCCCcccCCC
Q psy8863 264 KKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITN-YPTEISPLARKSNIE 342 (442)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~-~P~~~~pf~~~~~~~ 342 (442)
+++.+.. +....+ ..++.....++...+++++++.|+||+| ||..++|||++.+++
T Consensus 401 ~lL~~~~------------------~~~~~~-----~~dl~~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~ 457 (550)
T PTZ00401 401 ELLNTVL------------------EEKMAP-----TDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKD 457 (550)
T ss_pred HHHHHhc------------------ccCCCc-----ccccCchHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCC
Confidence 8766310 011111 1233344445556678888999999997 999999999776668
Q ss_pred CCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHH
Q psy8863 343 NNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIML 422 (442)
Q Consensus 343 ~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~ 422 (442)
||++++|||||++|+||+|||+|+|||+++++++++. |.++ . .++|||+|++||+|||||||||+|||+|+
T Consensus 458 dp~~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~------G~d~--~-~~~~Yl~a~~~G~PPhgG~GiGlERLvM~ 528 (550)
T PTZ00401 458 DERFTNSYDMFIRGEEISSGAQRIHDPDLLLARAKML------NVDL--T-PIKEYVDSFRLGAWPHGGFGVGLERVVML 528 (550)
T ss_pred CCCEEEEEEEEeCCEEEccchhhcCCHHHHHHHHHHc------CCCc--h-hhHHHHHHHHcCCCCCceEEEhHHHHHHH
Confidence 9999999999999999999999999999999998753 3333 1 23899999999999999999999999999
Q ss_pred HcCCCCccccccCCCCCCC
Q psy8863 423 LTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 423 l~g~~~Irdv~~FPr~~~~ 441 (442)
+||++|||+|++|||++..
T Consensus 529 ~lg~~nIR~v~lFPRdp~r 547 (550)
T PTZ00401 529 YLGLSNVRLASLFPRDPQR 547 (550)
T ss_pred HhCCCcHheeecCCCCCCC
Confidence 9999999999999999853
No 14
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=2.1e-92 Score=736.45 Aligned_cols=399 Identities=22% Similarity=0.347 Sum_probs=336.8
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCc--cCchhhhhhcCCCCCcEEEEEEEEee------cCCceeEEEEeEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEI--IGKNLYTDFKNYDIGDIIGAKGTLFK------TNTGELSIKVSSL 73 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~--~~~~~~~~~~~L~~gs~V~V~G~v~~------~~~~~~el~~~~i 73 (442)
++|.+||++|++|||++ ++||||++.+. +++++++++.+|+.||+|.|+|+|.+ +.++++||+++++
T Consensus 92 ~~R~~gk~~Fl~Lrd~~-----~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i 166 (530)
T PLN02850 92 TIRGKGKSAFLVLRQSG-----FTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKI 166 (530)
T ss_pred EEccCCCeEEEEEEeCC-----cCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCCccEEEEEeEE
Confidence 68999999999999999 99999998764 56778888999999999999999984 3457899999999
Q ss_pred EEEeccCCCCCccccc-------------------CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcE
Q psy8863 74 KLITKSLRPLPNKFQK-------------------LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFM 134 (442)
Q Consensus 74 ~vl~~~~~~lP~~~~~-------------------~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~ 134 (442)
+|+++|..+||++... ..+.++|+++||||+| ++..+++||+||.+++++|+||.++||+
T Consensus 167 ~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR-~~~~qaifrirs~i~~~~R~fl~~~gF~ 245 (530)
T PLN02850 167 YCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR-TPANQAIFRIQSQVCNLFREFLLSKGFV 245 (530)
T ss_pred EEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 9999998889976533 1346899999999998 8999999999999999999999999999
Q ss_pred EecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhc
Q psy8863 135 EVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAA 213 (442)
Q Consensus 135 EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~ 213 (442)
||+||+|+++..+.++.+|.+ +||++++||+||||+|||+++++|++|||+||||||||++++ ||++|||||||||+
T Consensus 246 EV~TP~L~~~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~ 323 (530)
T PLN02850 246 EIHTPKLIAGASEGGSAVFRL--DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEME 323 (530)
T ss_pred EEeCCccccCCCccccceeee--ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhh
Confidence 999999986432334578987 478999999999999999999999999999999999999875 99999999999999
Q ss_pred cC-CHHHHHHHHHHHHHHHHHHhhcCceee--cCC-----cccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHH
Q psy8863 214 YT-NYIWLMKFTEKMIKKIIMDCIGTTKID--YQG-----RLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSEL 285 (442)
Q Consensus 214 ~~-~~~dl~~~~e~li~~i~~~~~~~~~~~--~~~-----~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~ 285 (442)
|. +|+|+|+++|+|+++++..+.+.+..+ ... ..+.+..+++++||.||++++.+
T Consensus 324 ~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~----------------- 386 (530)
T PLN02850 324 IKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKE----------------- 386 (530)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHH-----------------
Confidence 87 699999999999999999988765321 111 12234457889999999986552
Q ss_pred HhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCc-EEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeecccc
Q psy8863 286 KKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNP-TYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFS 364 (442)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p-~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~ 364 (442)
.|+...+ ..+++......+..+++++++.| +||+|||..++|||++.+++|+++++|||||++|+||+|||+
T Consensus 387 --~g~~~~~-----~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G~EI~~G~q 459 (530)
T PLN02850 387 --AGVEVDP-----LGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRGEEIISGAQ 459 (530)
T ss_pred --cCCCCCC-----CCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEEEEeCCEEEeccce
Confidence 2333322 22344555556666777777765 667899999999997766689999999999999999999999
Q ss_pred ccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 365 ELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 365 r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
|+|||+++.+++++. |.++ . .+ +|||+|++||+|||||||||+|||+||+||++|||+|++|||++..
T Consensus 460 r~~d~~~l~~r~~~~------g~d~-~-~~-~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p~r 527 (530)
T PLN02850 460 RVHDPELLEKRAEEC------GIDV-K-TI-STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQR 527 (530)
T ss_pred ecCCHHHHHHHHHHc------CCCh-H-HH-HHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCCCCCC
Confidence 999999998888753 3333 1 24 8999999999999999999999999999999999999999999863
No 15
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=3.9e-92 Score=736.63 Aligned_cols=412 Identities=27% Similarity=0.506 Sum_probs=346.0
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~ 72 (442)
++|.+||++|++|||++ +.||||++++ ++.++.++.|+.||+|.|+|+|.++ ++|++||.+++
T Consensus 26 ~~R~~Gkl~Fi~LrD~s-----g~iQvv~~~~---~~~~~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~ 97 (583)
T TIGR00459 26 RRRDLGGLIFIDLRDRS-----GIVQVVCDPD---ADALKLAKGLRNEDVVQVKGKVSARPEGNINRNLDTGEIEILAES 97 (583)
T ss_pred EEEcCCCcEEEEEEeCC-----ccEEEEEeCC---HHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeE
Confidence 68999999999999999 9999999876 4567788899999999999999863 46899999999
Q ss_pred EEEEeccCCCCCccc-ccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec-CCCCCCC
Q psy8863 73 LKLITKSLRPLPNKF-QKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN-KPGGAIA 150 (442)
Q Consensus 73 i~vl~~~~~~lP~~~-~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~-~~~g~~~ 150 (442)
+++|++|. ++|+.. +...+.++|+++||||+| ++..+++|++||++++++|+||.++||+||+||+|++ +++|+
T Consensus 98 i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eGa-- 173 (583)
T TIGR00459 98 ITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLR-RPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGA-- 173 (583)
T ss_pred EEEeecCC-CCCCcccccccchhhhcccceEEcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCCCCC--
Confidence 99999996 445433 444678899999999995 8999999999999999999999999999999999995 67776
Q ss_pred CceeeccCCCCccee-eecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHH
Q psy8863 151 KPFITHHNSLNMKMF-LRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIK 229 (442)
Q Consensus 151 ~~f~~~~~~~~~~~~-L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~ 229 (442)
++|.+...+++..+| |+||||+|||++|++|++||||||||||||+++++|+||||||||||+|+|++|+|+++|+|++
T Consensus 174 r~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm~~~E~li~ 253 (583)
T TIGR00459 174 RDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLVS 253 (583)
T ss_pred cceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHHHHHHHHHH
Confidence 578776665566665 9999999999999999999999999999999998666999999999999999999999999999
Q ss_pred HHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCC-------Cccc---------------------------
Q psy8863 230 KIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYN-------EIDL--------------------------- 275 (442)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~-------~~~~--------------------------- 275 (442)
++++++.+ ++++.||+|+||.||++.|+++.. ..|+
T Consensus 254 ~v~~~v~~----------~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~ 323 (583)
T TIGR00459 254 HVFLEVKG----------IDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRV 323 (583)
T ss_pred HHHHHHhC----------CCCCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEe
Confidence 99999876 456789999999999999976411 0111
Q ss_pred ---------CCHHHHHHHHHhcCCC------CCcccc-------cc-----------------------------cccHH
Q psy8863 276 ---------QNKLFLKSELKKINPK------FNQKKI-------LN-----------------------------NLKKD 304 (442)
Q Consensus 276 ---------~~~~~l~~~~~~~~~~------~~~~~~-------~~-----------------------------~~~~g 304 (442)
.+.+.+.++++.+|.+ +..+.. +. ...+|
T Consensus 324 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG 403 (583)
T TIGR00459 324 PGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALG 403 (583)
T ss_pred cCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHH
Confidence 1345566677776654 211100 00 01277
Q ss_pred HHHHHHHHh--hhhcCCCCcEEEEcCCCC-----------CCCCCcccCCCCCc---------eeeEEEEEEcCEEeecc
Q psy8863 305 ILQLMLFEE--TTETKLWNPTYITNYPTE-----------ISPLARKSNIENNN---------ITERFELFIIGNEIANG 362 (442)
Q Consensus 305 ~l~~~~~~~--~~e~~~~~p~~v~~~P~~-----------~~pf~~~~~~~~~~---------~~~~fdl~~~G~Ei~~G 362 (442)
.++.++.+. ++++...+|+||+|||.. ..||+++.. +|+. .+++|||++||.||+||
T Consensus 404 ~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~-~d~~~l~~~p~~~~~~~yDLvlnG~ElggG 482 (583)
T TIGR00459 404 ALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKD-EDLENLEAAPEEALAEAYDLVLNGVELGGG 482 (583)
T ss_pred HHHHHHHHHcCCcCCCCceEEEEEeCCCccccCCCceeeeECCCCCCCC-CChhhhhcChhhhhhheeeEEEeceEecce
Confidence 777776432 466777789999999996 799999876 5555 89999999999999999
Q ss_pred ccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 363 FSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 363 ~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
|.|+|||+.|+++|+ ++ ++++++ +...+.+||+|++||+|||||+|||+|||+|+|+|.+||||||+||++...
T Consensus 483 s~rihd~~~Q~~~f~-~l---~~~~ee-~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~g 556 (583)
T TIGR00459 483 SIRIHDPEVQKKVFE-IL---GIDPEE-AREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTAA 556 (583)
T ss_pred eEEeCCHHHHHHHHH-Hc---CCCHHH-HHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCCC
Confidence 999999999999999 43 344444 555789999999999999999999999999999999999999999998753
No 16
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=7.1e-91 Score=716.51 Aligned_cols=399 Identities=24% Similarity=0.368 Sum_probs=328.5
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec--CCceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT--NTGELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~--~~~~~el~~~~i~vl~~~ 79 (442)
++|.+||++|++|||++ +.+.||||++++ .+++.++.++.|+.||+|.|+|++.++ +++++||.+++++|+++|
T Consensus 27 ~~R~~~~~~F~~lrD~~---~~g~iQ~v~~~~-~~~~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~vl~~~ 102 (453)
T TIGR00457 27 TKRSSKKIIFLELNDGS---SLGPIQAVINGE-DNPYLFQLLKSLTTGSSVSVTGKVVESPGKGQPVELQVKKIEVVGEA 102 (453)
T ss_pred EEEcCCCeEEEEEECCC---CCccEEEEEeCC-cChHHHHHHHcCCCCcEEEEEEEEEcCCCCCCCEEEEEeEEEEEecC
Confidence 68999999999999999 668999999877 344567788899999999999999976 457899999999999999
Q ss_pred C-CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc-
Q psy8863 80 L-RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH- 157 (442)
Q Consensus 80 ~-~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~- 157 (442)
. .++|..... ...+.++++||||+| ++..+++|++||.+++++|+||.++||+||+||+|+++.+++++++|.+..
T Consensus 103 ~~~~~P~~~~~-~~~~~~~~~r~l~lR-~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~ 180 (453)
T TIGR00457 103 EPDDYPLQKKE-HSLEFLRDIAHLRLR-TNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTD 180 (453)
T ss_pred CccCCCCCccc-cChhhHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCCCCCceEeccc
Confidence 6 455654432 345678899999997 788999999999999999999999999999999999765555568898762
Q ss_pred ------CCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 158 ------NSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 158 ------~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
+||++++||+||||+|||++ ++|++|||+||||||||++++ ||||||||||||++|+|++|+|+++|+++++
T Consensus 181 ~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~ 259 (453)
T TIGR00457 181 GIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKY 259 (453)
T ss_pred ccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHH
Confidence 37899999999999999976 689999999999999999996 9999999999999999999999999999999
Q ss_pred HHHHhhcCceee--cCCccc----------ccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCccccc
Q psy8863 231 IIMDCIGTTKID--YQGRLL----------DFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKIL 298 (442)
Q Consensus 231 i~~~~~~~~~~~--~~~~~~----------~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 298 (442)
+++.+.+.+..+ +.+... ....||+|+||.||++++.+. .. ++...+
T Consensus 260 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~-~~----------------~~~~~~---- 318 (453)
T TIGR00457 260 IIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKES-DK----------------NFEYED---- 318 (453)
T ss_pred HHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhc-CC----------------CCcCCC----
Confidence 999998765322 211111 123589999999999876631 00 001111
Q ss_pred ccccHHHHH-HHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHH
Q psy8863 299 NNLKKDILQ-LMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRF 376 (442)
Q Consensus 299 ~~~~~g~l~-~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~ 376 (442)
.||..+ .+....+.+.....|+||||||.+++|||++.+ +++++++||||+++| +||+|||+|+|+++.+.+++
T Consensus 319 ---~~g~~l~~~~e~~L~~~~~~~p~fIt~~P~~~~pfy~~~~-~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~ 394 (453)
T TIGR00457 319 ---FWGDDLQTEHERFLAEEYFKPPVFVTNYPKDIKAFYMKLN-DDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRM 394 (453)
T ss_pred ---CCCCCCCcHHHHHHHHHhCCCCEEEECCCcccChhhcccC-CCcCceeeeeeccCCceEEeehhccCCCHHHHHHHH
Confidence 112111 122233445555679999999999999999887 899999999999999 59999999999999988777
Q ss_pred HhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 377 KNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 377 ~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+++ + .++ . ..+|||++++||+|||||||||+|||+||++|++|||||++|||+++.
T Consensus 395 ~~~----g--~d~-~--~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~ 450 (453)
T TIGR00457 395 KEM----G--LDT-D--ALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGN 450 (453)
T ss_pred HHc----C--CCH-H--HHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCC
Confidence 643 3 232 1 127999999999999999999999999999999999999999999863
No 17
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=2.5e-90 Score=721.92 Aligned_cols=396 Identities=16% Similarity=0.246 Sum_probs=321.5
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC----CceeEEEEeEEEEEe
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN----TGELSIKVSSLKLIT 77 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~----~~~~el~~~~i~vl~ 77 (442)
+.|.+|+++||+||||| +...||||++++..+. .+.|+.|++|.|+|+|..++ +|++||.+++|+|++
T Consensus 128 ~~r~~g~i~FI~LrDGS---g~~~lQvVv~~~~~~~-----~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg 199 (633)
T PLN02532 128 SAPPPPSVAYLLISDGS---CVASLQVVVDSALAPL-----TQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIG 199 (633)
T ss_pred ccccCCCcEEEEEECCC---CccceEEEEeCCcccH-----hhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEe
Confidence 35899999999999999 3345999998764321 16799999999999998762 578999999999999
Q ss_pred ccC-CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCCCCCceee
Q psy8863 78 KSL-RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKPFIT 155 (442)
Q Consensus 78 ~~~-~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~~~~~f~~ 155 (442)
++. .|+|..... ...|.++++||||+| ++.++++||+||.+.+++|+||.++||+||+||+|+++ |+|+. +.|++
T Consensus 200 ~a~~~p~Pi~~k~-~~~E~LR~~RhLdLR-t~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~-elF~v 276 (633)
T PLN02532 200 TVDPEKYPLSKKR-LPLDMLRDFSHFRPR-TTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFG-EMFRV 276 (633)
T ss_pred cCCCCCCcccccc-CCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccc-cccce
Confidence 975 467765443 245666699999996 89999999999999999999999999999999999964 55543 33221
Q ss_pred --------------------------------------------------------------------------------
Q psy8863 156 -------------------------------------------------------------------------------- 155 (442)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (442)
T Consensus 277 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (633)
T PLN02532 277 TTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSV 356 (633)
T ss_pred eccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -------ccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHH
Q psy8863 156 -------HHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKM 227 (442)
Q Consensus 156 -------~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~l 227 (442)
..+|||+++||+||||||+|+++ ++++|||+||||||||+++| |||+||||||+||+|.|++|+|+++|+|
T Consensus 357 ~~~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~l 435 (633)
T PLN02532 357 KADKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDY 435 (633)
T ss_pred cccccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHH
Confidence 12589999999999999999865 69999999999999999995 9999999999999999999999999999
Q ss_pred HHHHHHHhhcCce--eecCCcc----------cccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcc
Q psy8863 228 IKKIIMDCIGTTK--IDYQGRL----------LDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQK 295 (442)
Q Consensus 228 i~~i~~~~~~~~~--~~~~~~~----------~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 295 (442)
|+++++.+.+++. +++.+.. ..++.||+||||.||++++.+... . + +....
T Consensus 436 I~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~-~-------------~--~e~~~- 498 (633)
T PLN02532 436 FKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATD-K-------------K--FETKP- 498 (633)
T ss_pred HHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcC-C-------------C--ccccc-
Confidence 9999999998753 3443321 235679999999999997763100 0 0 01111
Q ss_pred cccccccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHH
Q psy8863 296 KILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSV 374 (442)
Q Consensus 296 ~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~ 374 (442)
.|+. ++-.++.+.+++..++.|+||+|||.+++||||+.+ +|+.++++|||+++| +||+||++|+|+++.+.+
T Consensus 499 ----~~g~-dL~~e~Er~L~~~~~~~PvFVtdyP~~ikPFY~~~~-~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~ 572 (633)
T PLN02532 499 ----EWGI-ALTTEHLSYLADEIYKKPVIIYNYPKELKPFYVRLN-DDGKTVAAFDLVVPKVGTVITGSQNEERMDILNA 572 (633)
T ss_pred ----ccCC-ccChHHHHHHHHHHcCCCEEEECCChhhchhhCCcC-CCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHH
Confidence 1221 222334444555556889999999999999999888 678899999999997 599999999999988766
Q ss_pred HHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 375 RFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 375 ~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
++++. + .++ . .++|||++++||+|||||||||||||+||+||++|||||++|||+++.
T Consensus 573 ~~ke~----G--ld~-e--~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~ 630 (633)
T PLN02532 573 RIEEL----G--LPR-E--QYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGK 630 (633)
T ss_pred HHHHc----C--CCh-h--hHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCc
Confidence 66543 3 333 1 248999999999999999999999999999999999999999999864
No 18
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-89 Score=708.77 Aligned_cols=397 Identities=24% Similarity=0.374 Sum_probs=327.2
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~~ 79 (442)
++|.+||++|++|||++ +.+|+++..+. +++.++.+++|+.||+|.|+|++.++++ |++||++++++|+++|
T Consensus 27 ~~R~~g~~~Fi~lrD~~-----g~iq~~~~~~~-~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~~~i~vl~~~ 100 (450)
T PRK03932 27 TKRDSGKIAFLQLRDGS-----CFKQLQVVKDN-GEEYFEEIKKLTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGED 100 (450)
T ss_pred EEEeCCCeEEEEEECCC-----CcEEEEEEcCC-ChHHHHHHhcCCCCcEEEEEEEEEcCCCCCCCEEEEEEEEEEccCC
Confidence 68999999999999999 99999997665 4567888889999999999999998764 6899999999999997
Q ss_pred CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc--
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH-- 157 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~-- 157 (442)
..++|..... ...+.++++||||+| ++..+++|++||.+++++|+||.++||+||+||+|+++.+++++++|.|+.
T Consensus 101 ~~~~p~~~~~-~~~~~~~~~r~l~lR-~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~ 178 (450)
T PRK03932 101 PEDYPIQKKR-HSIEFLREIAHLRPR-TNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLD 178 (450)
T ss_pred CCCCCCCccc-cChHHHhhCceeecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeeccc
Confidence 5555544322 245788999999997 679999999999999999999999999999999999765555568998854
Q ss_pred -----CCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 158 -----NSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 158 -----~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
+||++++||+||||+|||++ ++|++|||+||||||||++++ ||||||||||||++|.|++++|+++|+|++++
T Consensus 179 ~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~ 257 (450)
T PRK03932 179 LDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYV 257 (450)
T ss_pred ccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHH
Confidence 68999999999999999875 589999999999999999974 99999999999999999999999999999999
Q ss_pred HHHhhcCce--eecCCcc--------c-c-cCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccc
Q psy8863 232 IMDCIGTTK--IDYQGRL--------L-D-FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILN 299 (442)
Q Consensus 232 ~~~~~~~~~--~~~~~~~--------~-~-~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 299 (442)
++++.+++. +++.+.. + . ++.||+||||.||++.+.. .|..+..
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~-------------------~~~~~~~----- 313 (450)
T PRK03932 258 VKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQK-------------------SGKKFEF----- 313 (450)
T ss_pred HHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHH-------------------cCCCcCC-----
Confidence 999987543 2222221 1 1 4579999999999986552 1111111
Q ss_pred cccHHHHHHHHHHhhh-hcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHHH
Q psy8863 300 NLKKDILQLMLFEETT-ETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFK 377 (442)
Q Consensus 300 ~~~~g~l~~~~~~~~~-e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~~ 377 (442)
...+|..+....+.++ ++++++|+||+|||.+++|||++.++++ ++++||||++|| .||+||++|+|+++.+.++++
T Consensus 314 ~~~~g~~l~~~~e~~l~~~~~~~pvfI~~yP~~~~pfy~~~~~~~-~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~ 392 (450)
T PRK03932 314 PVEWGDDLGSEHERYLAEEHFKKPVFVTNYPKDIKAFYMRLNPDG-KTVAAMDLLAPGIGEIIGGSQREERLDVLEARIK 392 (450)
T ss_pred CCCcccccChHHHHHHHHHhcCCcEEEECCCcccCcccCcCCCCC-CEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHH
Confidence 0112222222233333 3477889999999999999997766466 999999999999 699999999999999877765
Q ss_pred hhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 378 NQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 378 ~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
++ |.++ . .+ +||+++++||+|||||||||+|||+||++|++|||||++|||+++.
T Consensus 393 ~~------g~~~-~-~~-~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r 447 (450)
T PRK03932 393 EL------GLNK-E-DY-WWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGR 447 (450)
T ss_pred Hc------CCCH-H-HH-HHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCC
Confidence 43 3333 1 13 7999999999999999999999999999999999999999999863
No 19
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=7.2e-89 Score=709.81 Aligned_cols=396 Identities=22% Similarity=0.335 Sum_probs=323.3
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcC--CCCCcEEEEEEEEeecCCc--eeEEEEeEEEEEe
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKN--YDIGDIIGAKGTLFKTNTG--ELSIKVSSLKLIT 77 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~--L~~gs~V~V~G~v~~~~~~--~~el~~~~i~vl~ 77 (442)
++|.+|+++|++|+||+ +.++||||++++. ..++.+.. |+.||+|.|+|++++++++ .+||.+++++|++
T Consensus 118 ~iR~~g~~~Fi~l~Dgs---~~~~lQ~v~~~~~---~~~~~l~~~~l~~gs~V~V~G~v~~~~~~~~~~EL~v~~i~vlg 191 (565)
T PLN02603 118 TLRAQSSVTFIEVNDGS---CLSNMQCVMTPDA---EGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVG 191 (565)
T ss_pred EEEeCCCeEEEEEECCC---CCEeEEEEEECcH---HHHHHHhhcCCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEEE
Confidence 68999999999999999 4467999997753 35666654 9999999999999987764 5999999999999
Q ss_pred ccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec-CCCCCCCCceeec
Q psy8863 78 KSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN-KPGGAIAKPFITH 156 (442)
Q Consensus 78 ~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~-~~~g~~~~~f~~~ 156 (442)
+|+.++|.+.... ..+.....+||++| ++..++++|+||++++++|+||.++||+||+||+|++ .++||+ +.|.++
T Consensus 192 ~a~~~~Pi~~~~~-s~e~lr~~~hLr~R-t~~~~ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~EGA~-e~F~Vt 268 (565)
T PLN02603 192 KSDPSYPIQKKRV-SREFLRTKAHLRPR-TNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAG-EQFCVT 268 (565)
T ss_pred CCCCCCCCccccc-chhhhhhhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeecccCCCccc-cCceee
Confidence 9987788754332 34667778999997 7999999999999999999999999999999999997 477765 445331
Q ss_pred ----------------------------cCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccch
Q psy8863 157 ----------------------------HNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTM 207 (442)
Q Consensus 157 ----------------------------~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtm 207 (442)
.+||++++||++|||||+|++ ++|++|||+||||||||++++ |||+||||
T Consensus 269 tl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~-~~~l~rVy~igp~FRaE~s~T~RHL~EF~m 347 (565)
T PLN02603 269 TLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETY-ATALSDVYTFGPTFRAENSNTSRHLAEFWM 347 (565)
T ss_pred eccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHH-HhcccceEEEecceeCCCCCCcccccccee
Confidence 257899999999999999985 689999999999999999996 99999999
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce--eecCCccc----------ccCCCccceeHHHHHHHHCCCCCCccc
Q psy8863 208 IEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK--IDYQGRLL----------DFSKSFEKLTIIEAIKKYTPQYNEIDL 275 (442)
Q Consensus 208 lE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~--~~~~~~~~----------~~~~pf~rit~~ea~~~~~~~~~~~~~ 275 (442)
||+||+|+|++|+|+++|++++++++.+.+++. +++.+... ....||+||||.||++++.+.
T Consensus 348 lE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi~iL~~~------ 421 (565)
T PLN02603 348 IEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKA------ 421 (565)
T ss_pred eeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHHHHHHHh------
Confidence 999999999999999999999999999998764 33333211 135689999999999876520
Q ss_pred CCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHh-hhhcCCC-CcEEEEcCCCCCCCCCcccCCCCCceeeEEEEE
Q psy8863 276 QNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEE-TTETKLW-NPTYITNYPTEISPLARKSNIENNNITERFELF 353 (442)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-~~e~~~~-~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~ 353 (442)
..+.+. ...||..+....+. +.+..++ +|+||+|||++++||||+.+ +|+.++++|||+
T Consensus 422 ---------~~~~~~---------~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~-~d~~~v~~fDLl 482 (565)
T PLN02603 422 ---------KKKFEF---------PVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMREN-DDGKTVAAMDML 482 (565)
T ss_pred ---------ccccCC---------CCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccC-CCCCeeEEEEEE
Confidence 001111 12233333333333 3333333 69999999999999999887 678899999999
Q ss_pred EcC-EEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCcccc
Q psy8863 354 IIG-NEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDV 432 (442)
Q Consensus 354 ~~G-~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv 432 (442)
+|| +||+||++|+|+++.+.+++++. ++. ++ . .+|||++++||+|||||||||||||+||++|++|||||
T Consensus 483 ~p~~gEl~gGsqRe~r~e~L~~~~~e~----g~~-~e-~---y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdv 553 (565)
T PLN02603 483 VPRVGELIGGSQREERLEYLEARLDEL----KLN-KE-S---YWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDA 553 (565)
T ss_pred ecCceEecCHHHHHhhHHHHHHHHHHc----CCC-HH-H---HHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhhe
Confidence 998 59999999999999777765543 332 22 2 38999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q psy8863 433 ILFPHLRNE 441 (442)
Q Consensus 433 ~~FPr~~~~ 441 (442)
++|||+++.
T Consensus 554 i~FPR~~g~ 562 (565)
T PLN02603 554 IPFPRVPGS 562 (565)
T ss_pred eeccCCCCC
Confidence 999999864
No 20
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=9.8e-88 Score=699.50 Aligned_cols=396 Identities=21% Similarity=0.321 Sum_probs=320.1
Q ss_pred cccccC--CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC----------CceeEEE
Q psy8863 2 LKRVMG--KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN----------TGELSIK 69 (442)
Q Consensus 2 ~~R~~g--~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~----------~~~~el~ 69 (442)
++|.+| +++|++||||+ +...||||++++ .+.+..+.+|+.||+|.|+|+++.++ ++.+||.
T Consensus 92 ~iR~~g~~~~~Fv~lrDgs---g~~~iQiVv~~~---~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~ 165 (586)
T PTZ00425 92 AVRKQGGGRFCFVNLNDGS---CHLNLQIIVDQS---IENYEKLLKCGVGCCFRFTGKLIISPVQNENKKGLLKENVELA 165 (586)
T ss_pred ehhhcCCceEEEEEEECCC---CCcceEEEECCc---hHHHHHHhcCCCccEEEEEEEEEcCCccccCcCCCCCccEEEE
Confidence 578988 48999999999 334799999754 23566778899999999999998643 2559999
Q ss_pred E-----eEEEEEeccC--CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceee
Q psy8863 70 V-----SSLKLITKSL--RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILH 142 (442)
Q Consensus 70 ~-----~~i~vl~~~~--~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~ 142 (442)
+ ++++|++++. .++|..... ...+.++++||||+| ++..+++||+||.+..++|+||.++||+||+||+|+
T Consensus 166 ~~~~~~~~~~ilg~~~d~~~yPi~~k~-~~~e~lr~~rhL~lR-~~~~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit 243 (586)
T PTZ00425 166 LKDNSIHNFEIYGENLDPQKYPLSKKN-HGKEFLREVAHLRPR-SYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLIT 243 (586)
T ss_pred EecCCCceEEEEeccCCCCCCCCCCcc-CChhhhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeec
Confidence 8 6999999883 245544322 346788889999997 799999999999999999999999999999999999
Q ss_pred c-CCCCCCCCceeec-------------------------------------------------------------cCCC
Q psy8863 143 N-KPGGAIAKPFITH-------------------------------------------------------------HNSL 160 (442)
Q Consensus 143 ~-~~~g~~~~~f~~~-------------------------------------------------------------~~~~ 160 (442)
+ .|+|++ +.|.+. .+||
T Consensus 244 ~s~~EGa~-elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF 322 (586)
T PTZ00425 244 TSDCEGGG-EMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFF 322 (586)
T ss_pred ccCCCCCc-ceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6 466654 556541 1589
Q ss_pred CcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy8863 161 NMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239 (442)
Q Consensus 161 ~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~ 239 (442)
|+++||+||||||+|++ ++|++|||+||||||||++++ ||++||||||+||+|+|++++|+++|++++++++.+.+++
T Consensus 323 ~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl~~~ 401 (586)
T PTZ00425 323 SKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNN 401 (586)
T ss_pred CcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999976 588999999999999999985 9999999999999999999999999999999999998865
Q ss_pred e--eecCCccc----------ccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHH
Q psy8863 240 K--IDYQGRLL----------DFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQ 307 (442)
Q Consensus 240 ~--~~~~~~~~----------~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~ 307 (442)
. +++.+..+ .+..||+||||+||++++.+ ...+++... .||..+
T Consensus 402 ~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~---------------~~~~~~~~~---------~~G~dL 457 (586)
T PTZ00425 402 FDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQP---------------YSDSFEVPV---------KWGMDL 457 (586)
T ss_pred ccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHH---------------hHHhcCCCC---------Cccccc
Confidence 3 44433211 13569999999999987652 111122222 122223
Q ss_pred HHHHHhhhhcC-CCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHHHhhHHHhhc
Q psy8863 308 LMLFEETTETK-LWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKNQIDLKNE 385 (442)
Q Consensus 308 ~~~~~~~~e~~-~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~ 385 (442)
....+.++..+ .++|+||+|||++++|||++.+ +|+.++++|||++|| +||+||++|+|+++.+.++++++ ++
T Consensus 458 ~~e~Er~L~~~~~~~PvFItdyP~~~kPFY~~~~-~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~----gl 532 (586)
T PTZ00425 458 QSEHERFVAEQIFKKPVIVYNYPKDLKAFYMKLN-EDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEK----KL 532 (586)
T ss_pred chHHHHHHHHHhcCCcEEEECCccccCccccCcC-CCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHc----CC
Confidence 33344445545 4689999999999999999887 555788999999998 69999999999999776665543 54
Q ss_pred cCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 386 INGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 386 ~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+. + -++|||++++||+|||||||||+|||+||+||++|||||++|||+++.
T Consensus 533 ~~-e----~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g~ 583 (586)
T PTZ00425 533 NM-E----SYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGH 583 (586)
T ss_pred Ch-h----HHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCCCc
Confidence 32 2 238999999999999999999999999999999999999999999864
No 21
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.5e-87 Score=699.82 Aligned_cols=397 Identities=19% Similarity=0.284 Sum_probs=321.7
Q ss_pred cccccCC--eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC-----CceeEEEEeEEE
Q psy8863 2 LKRVMGK--ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN-----TGELSIKVSSLK 74 (442)
Q Consensus 2 ~~R~~g~--~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~-----~~~~el~~~~i~ 74 (442)
++|.+|| ++|++||||+ +.+.||||++++.. ...+.|+.||+|.|+|+|+.++ +|++||++++++
T Consensus 61 ~iR~~Gk~~i~Fl~LRDgs---~~g~iQvVv~~~~~-----~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~ 132 (572)
T PLN02221 61 TGREQGKGTFAFLEVNDGS---CPANLQVMVDSSLY-----DLSTLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVI 132 (572)
T ss_pred ehhhCCCceEEEEEEeCCc---ccccEEEEEcCchh-----hHHhcCCCceEEEEEEEEEeCCccCCCCccEEEEEeEEE
Confidence 5799986 7999999999 66899999976521 1123689999999999998754 368999999999
Q ss_pred EEeccC-CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCCCCCc
Q psy8863 75 LITKSL-RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKP 152 (442)
Q Consensus 75 vl~~~~-~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~~~~~ 152 (442)
|+++|. .|+|..... .+.+.++++|||++| ++.++++||+||.+.+++|+||.++||+||+||+|+++ ++|+ ++.
T Consensus 133 vl~~a~~~~~Pi~~~~-~~~e~lrr~~hLR~R-~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg-~e~ 209 (572)
T PLN02221 133 DVGTVDPTKYPLPKTK-LTLEFLRDVLHLRSR-TNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGA-GEM 209 (572)
T ss_pred EEecCCCCCCCCCCCc-CChHHHhhcchhhcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccCCCC-ccc
Confidence 999986 367765432 245667788888886 89999999999999999999999999999999999964 5443 255
Q ss_pred eeec----------------------------------------------------------------------------
Q psy8863 153 FITH---------------------------------------------------------------------------- 156 (442)
Q Consensus 153 f~~~---------------------------------------------------------------------------- 156 (442)
|.+.
T Consensus 210 F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (572)
T PLN02221 210 FQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKP 289 (572)
T ss_pred eeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhhhhhhhhhhccc
Confidence 5531
Q ss_pred ------------cCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCC-CCCCCccchhhhhhccCCHHHHHHH
Q psy8863 157 ------------HNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGIS-PRHNPEFTMIEFYAAYTNYIWLMKF 223 (442)
Q Consensus 157 ------------~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~-~rHl~EFtmlE~e~~~~~~~dl~~~ 223 (442)
.+|||+++||+||||||+|+++ ++++|||+||||||||+++ +|||+||||||+||+|.|++|+|++
T Consensus 290 ~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l 368 (572)
T PLN02221 290 GLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNC 368 (572)
T ss_pred CCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHH
Confidence 2699999999999999999964 6799999999999999997 5999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCce--eecCCcc-----c-----ccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCC
Q psy8863 224 TEKMIKKIIMDCIGTTK--IDYQGRL-----L-----DFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPK 291 (442)
Q Consensus 224 ~e~li~~i~~~~~~~~~--~~~~~~~-----~-----~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 291 (442)
+|+|++++++.+.+++. +++.+.. + .+..||+||||.||++++... ...|.+
T Consensus 369 ~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~----------------~~~g~~ 432 (572)
T PLN02221 369 AEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEA----------------VAKGKE 432 (572)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhh----------------hhcCCC
Confidence 99999999999998753 2221111 1 146799999999999976520 001222
Q ss_pred CCcccccccccHHHHHHHHHHhhhhcC-CCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCH
Q psy8863 292 FNQKKILNNLKKDILQLMLFEETTETK-LWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDP 369 (442)
Q Consensus 292 ~~~~~~~~~~~~g~l~~~~~~~~~e~~-~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~ 369 (442)
+.. ...||..+...++..+..+ ..+|+||+|||..++||||+.+ +++.++++||||++| .||+||++|+|++
T Consensus 433 ~~~-----~~~~G~dl~~e~Er~L~~~~~~~pvfv~dyP~~~~pfy~~~~-~d~~~~~~fDLl~~g~~El~~g~~R~~r~ 506 (572)
T PLN02221 433 FDN-----NVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLN-DDEKTVAAMDVLVPKVGELIGGSQREERY 506 (572)
T ss_pred CCC-----CcchhhhhhHHHHHHHHHHhcCCcEEEEcCChhhCcccccCC-CCCceEEEEEEecCCceEECCHHHHHHHH
Confidence 111 2245555555556666665 5789999999999999998776 677888999999998 5999999999999
Q ss_pred HHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 370 EEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+...++++++ + .++ .++ +|||++++||+|||||||||+|||+||++|++|||||++|||+++.
T Consensus 507 e~l~~~~~~~----g--~~~--~~~-~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~ 569 (572)
T PLN02221 507 DVIKQRIEEM----G--LPI--EPY-EWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGK 569 (572)
T ss_pred HHHHHHHHHc----C--CCh--hhh-HHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCc
Confidence 8876666543 3 332 223 7999999999999999999999999999999999999999999864
No 22
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-86 Score=667.09 Aligned_cols=413 Identities=27% Similarity=0.469 Sum_probs=345.0
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~ 72 (442)
++|++|+++||+|||.+ |.+|||++++. +++.|+.++.|+.|++|.|+|+|... ++|++||.+++
T Consensus 26 r~Rd~GgliFiDLRDr~-----GivQvv~~~~~-~~~~~~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l~TGeiEv~a~~ 99 (585)
T COG0173 26 RRRDHGGLIFIDLRDRE-----GIVQVVFDPED-SPEAFEVASRLRNEFVIQVTGTVRARPEGTINPNLPTGEIEVLAEE 99 (585)
T ss_pred eccccCCeEEEEcccCC-----CeEEEEECCcc-CHHHHHHHHhcCceEEEEEEEEEEecCccccCCCCCcceEEEEeee
Confidence 46899999999999999 99999999863 46789999999999999999998764 46899999999
Q ss_pred EEEEeccCCCCCccccc--CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceee-cCCCCCC
Q psy8863 73 LKLITKSLRPLPNKFQK--LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILH-NKPGGAI 149 (442)
Q Consensus 73 i~vl~~~~~~lP~~~~~--~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~-~~~~g~~ 149 (442)
|+||++|. ++|+...+ -..++.|+.+|||||| +|.++..+++||+++.++|+||.++||+||+||+|+ |+|+||
T Consensus 100 i~vln~s~-~lPf~i~d~~~~~Ee~RLkYRyLDLR-R~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPEGA- 176 (585)
T COG0173 100 IEVLNASK-TLPFQIEDETNASEEIRLKYRYLDLR-RPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA- 176 (585)
T ss_pred EEEEecCC-CCCcCCCCCCCcchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCCccc-
Confidence 99999985 66776544 3567899999999997 799999999999999999999999999999999999 679987
Q ss_pred CCceeeccCCCCccee-eecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHH
Q psy8863 150 AKPFITHHNSLNMKMF-LRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228 (442)
Q Consensus 150 ~~~f~~~~~~~~~~~~-L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li 228 (442)
+.|.|+.......+| |+||||+|+|.||++|++|+|||++|||+|+.+..++|||||+|+||+|.+-+|+|+++|+|+
T Consensus 177 -RDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~edv~~~~E~l~ 255 (585)
T COG0173 177 -RDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEEDVMELIEKLL 255 (585)
T ss_pred -cccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCHHHHHHHHHHHH
Confidence 889887665555566 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCCCcccC--------------------------------
Q psy8863 229 KKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQ-------------------------------- 276 (442)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~-------------------------------- 276 (442)
+++++.+.+ +++..||+||||+||+..|+++. +|+.
T Consensus 256 ~~vf~~~~~----------i~l~~pFprmtY~eAm~~YGSDK--PDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~a 323 (585)
T COG0173 256 RYVFKEVKG----------IELKTPFPRMTYAEAMRRYGSDK--PDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKA 323 (585)
T ss_pred HHHHHHhcC----------CccCCCcccccHHHHHHHhCCCC--CcccCCceehhHHHHhcCCCcceehhhhhcCCeEEE
Confidence 999999876 56788999999999999999742 2221
Q ss_pred ------------CHHHHHHHHHhcCCCC---------------------------------Ccccc--cc-------ccc
Q psy8863 277 ------------NKLFLKSELKKINPKF---------------------------------NQKKI--LN-------NLK 302 (442)
Q Consensus 277 ------------~~~~l~~~~~~~~~~~---------------------------------~~~~~--~~-------~~~ 302 (442)
..+.+.++++.+|.+- ..+++ ++ ...
T Consensus 324 i~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~ 403 (585)
T COG0173 324 IVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKA 403 (585)
T ss_pred EEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHH
Confidence 0245556666554310 00110 00 134
Q ss_pred HHHHHHHHHHh--hhhcCCCCcEEEEcCCCCC------------CCCCcccCCC------CC--ceeeEEEEEEcCEEee
Q psy8863 303 KDILQLMLFEE--TTETKLWNPTYITNYPTEI------------SPLARKSNIE------NN--NITERFELFIIGNEIA 360 (442)
Q Consensus 303 ~g~l~~~~~~~--~~e~~~~~p~~v~~~P~~~------------~pf~~~~~~~------~~--~~~~~fdl~~~G~Ei~ 360 (442)
+|.+..++.+. ++.+....++||+|||..- .||+++...+ +| -.+..||+++||.||+
T Consensus 404 lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~Elg 483 (585)
T COG0173 404 LGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGYELG 483 (585)
T ss_pred HHHHHHHHHHHhCCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccEeec
Confidence 77777777654 4566666899999999853 5999987611 22 2488899999999999
Q ss_pred ccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCC
Q psy8863 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440 (442)
Q Consensus 361 ~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~ 440 (442)
|||.|+|+++.|.+.|+.. +...++ +.+.+..+|+|++||.|||||+|+|+|||+|+|+|.+||||||+||++..
T Consensus 484 gGSiRIh~~eiQ~~vF~~l----g~~~ee-a~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~ 558 (585)
T COG0173 484 GGSIRIHDPEIQEKVFEIL----GISPEE-AEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQ 558 (585)
T ss_pred cceeeeCCHHHHHHHHHHc----CCCHHH-HHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCcc
Confidence 9999999999999999865 232222 33355789999999999999999999999999999999999999999864
Q ss_pred C
Q psy8863 441 E 441 (442)
Q Consensus 441 ~ 441 (442)
.
T Consensus 559 a 559 (585)
T COG0173 559 A 559 (585)
T ss_pred c
Confidence 3
No 23
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=2e-84 Score=680.66 Aligned_cols=414 Identities=24% Similarity=0.433 Sum_probs=331.2
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~ 72 (442)
++|.+|+++|++|||++ +.+|||++++. .++.++.++.|+.||+|.|+|+|..+ ++|++||.+++
T Consensus 83 ~~R~~G~l~FidLRD~~-----G~iQvV~~~~~-~~~~~~~~~~L~~esvV~V~G~V~~r~~~~~n~~~~tGeiEl~~~~ 156 (652)
T PLN02903 83 LHRDMGGLTFLDVRDHT-----GIVQVVTLPDE-FPEAHRTANRLRNEYVVAVEGTVRSRPQESPNKKMKTGSVEVVAES 156 (652)
T ss_pred EEecCCCcEEEEEEcCC-----ccEEEEEeCCc-cHHHHHHHhcCCCCCEEEEEEEEEeCCCcCcCCCCCCCCEEEEEeE
Confidence 68999999999999999 99999998764 34577888999999999999999854 35789999999
Q ss_pred EEEEeccCCCCCccccc------CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhh-CCcEEecCceeec-C
Q psy8863 73 LKLITKSLRPLPNKFQK------LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEK-NDFMEVETPILHN-K 144 (442)
Q Consensus 73 i~vl~~~~~~lP~~~~~------~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~-~gF~EV~TPiL~~-~ 144 (442)
++||++|..++|+...+ ..+.++|+++||||+| ++.++++|++||.+++++|+||.+ +||+||+||+|+. +
T Consensus 157 i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR-~~~~q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st 235 (652)
T PLN02903 157 VDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLR-RPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRST 235 (652)
T ss_pred EEEEecCCCCCCccccccccccccCChhhhhccceeecC-CHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCC
Confidence 99999997788875542 2467899999999998 799999999999999999999997 9999999999995 5
Q ss_pred CCCCCCCceeeccCC-CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHH
Q psy8863 145 PGGAIAKPFITHHNS-LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKF 223 (442)
Q Consensus 145 ~~g~~~~~f~~~~~~-~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~ 223 (442)
++|+ ++|.+.... .+..+||+||||+|||++|++|++||||||||||||+++++|+||||||||||+|+|++|+|++
T Consensus 236 ~eGa--rdf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d~~dvm~~ 313 (652)
T PLN02903 236 PEGA--RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKL 313 (652)
T ss_pred CCCC--cccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecCCCHHHHHHH
Confidence 6665 466554432 2455679999999999999999999999999999999998666999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCC-------CcccCC-------------------
Q psy8863 224 TEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYN-------EIDLQN------------------- 277 (442)
Q Consensus 224 ~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~-------~~~~~~------------------- 277 (442)
+|+|++++++++.+ +++..||+||||.||+++|+++.. ..|+++
T Consensus 314 ~E~li~~v~~~~~~----------~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~ 383 (652)
T PLN02903 314 NEDLIRQVFKEIKG----------VQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGV 383 (652)
T ss_pred HHHHHHHHHHHHhC----------CCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCe
Confidence 99999999998765 345679999999999999987421 111100
Q ss_pred ----------------H----HHHHHHHHhcCCC------C------------------------------Cccccc--c
Q psy8863 278 ----------------K----LFLKSELKKINPK------F------------------------------NQKKIL--N 299 (442)
Q Consensus 278 ----------------~----~~l~~~~~~~~~~------~------------------------------~~~~~~--~ 299 (442)
. +.+.+.++. |.+ + ++++++ .
T Consensus 384 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~ 462 (652)
T PLN02903 384 VKAICVPDGKKISNNTALKKGDIYNEAIKS-GAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFA 462 (652)
T ss_pred EEEEEeCCCCccchhhhcccHHHHHHHHHc-CCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEE
Confidence 0 112222211 210 0 001110 0
Q ss_pred -------cccHHHHHHHHHHhh--hhcCCCCcEEEEcCCCCC------------CCCCcccCCCC-----CceeeEEEEE
Q psy8863 300 -------NLKKDILQLMLFEET--TETKLWNPTYITNYPTEI------------SPLARKSNIEN-----NNITERFELF 353 (442)
Q Consensus 300 -------~~~~g~l~~~~~~~~--~e~~~~~p~~v~~~P~~~------------~pf~~~~~~~~-----~~~~~~fdl~ 353 (442)
...+|.+..++.+.+ +.+....++||+|||... .||+++.. +| .-.+..|||+
T Consensus 463 a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~-~d~~~l~~~~a~~YDLV 541 (652)
T PLN02903 463 AGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNP-EDMGDLSSARALAYDMV 541 (652)
T ss_pred CCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCCCCC-cchhhhhhhhhhcceeE
Confidence 124777777776643 333345799999999852 49998754 22 2357899999
Q ss_pred EcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccc
Q psy8863 354 IIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVI 433 (442)
Q Consensus 354 ~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~ 433 (442)
+||+||+|||+|+||++.|+++|+.. ++..++ ....+.+||+|++||+|||||+|+|+|||+|+++|.+||||||
T Consensus 542 lNG~EiggGS~Rih~~~~q~~~f~~~----g~~~e~-~~~~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~Irdvi 616 (652)
T PLN02903 542 YNGVEIGGGSLRIYRRDVQQKVLEAI----GLSPEE-AESKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIRDVI 616 (652)
T ss_pred ecceeeccceEecCCHHHHHHHHHHc----CCCHHH-HHHHHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchHheE
Confidence 99999999999999999999999764 333222 3335689999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8863 434 LFPHLRNE 441 (442)
Q Consensus 434 ~FPr~~~~ 441 (442)
+||++...
T Consensus 617 aFPKt~~g 624 (652)
T PLN02903 617 AFPKTTTA 624 (652)
T ss_pred ecCCCCCc
Confidence 99998653
No 24
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.3e-84 Score=683.41 Aligned_cols=413 Identities=26% Similarity=0.473 Sum_probs=335.0
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC---------CceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN---------TGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~---------~~~~el~~~~ 72 (442)
++|.+|+++|++|||++ +.+|||+++. ++.|+.+++|+.||+|.|+|+|.+++ +|++||.+++
T Consensus 28 ~~R~~g~l~Fi~LrD~~-----g~iQ~v~~~~---~~~~~~~~~l~~es~V~V~G~v~~~~~~~~n~~~~~g~~El~~~~ 99 (588)
T PRK00476 28 RRRDHGGLIFIDLRDRE-----GIVQVVFDPD---AEAFEVAESLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASE 99 (588)
T ss_pred EEEeCCCeEEEEEEeCC-----ceEEEEEeCC---HHHHHHHhCCCCCCEEEEEEEEEecCCcccCccCCCCcEEEEEeE
Confidence 68999999999999999 9999999862 45788889999999999999998754 6789999999
Q ss_pred EEEEeccCCCCCcccccC--CchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec-CCCCCC
Q psy8863 73 LKLITKSLRPLPNKFQKL--SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN-KPGGAI 149 (442)
Q Consensus 73 i~vl~~~~~~lP~~~~~~--~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~-~~~g~~ 149 (442)
++|+++|. ++|+...+. .++++|+++||||+| ++..+++|++||.+++++|+||.++||+||+||+|+. +++|+
T Consensus 100 i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~ega- 176 (588)
T PRK00476 100 LEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLR-RPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA- 176 (588)
T ss_pred EEEEecCC-CCCCcccccccCChhhhhhcceEeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCCCCC-
Confidence 99999998 888876432 467899999999997 8999999999999999999999999999999999996 56665
Q ss_pred CCceeeccC-CCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHH
Q psy8863 150 AKPFITHHN-SLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228 (442)
Q Consensus 150 ~~~f~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li 228 (442)
++|.+... +.+..+||+||||+|||++|++|++||||||||||+|+++++|+||||||||||+|++++|+|+++|+|+
T Consensus 177 -~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm~~~E~li 255 (588)
T PRK00476 177 -RDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLI 255 (588)
T ss_pred -ccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecCCCHHHHHHHHHHHH
Confidence 67877654 4566677999999999999999999999999999999999855669999999999999999999999999
Q ss_pred HHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCC-------CcccC-------------------------
Q psy8863 229 KKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYN-------EIDLQ------------------------- 276 (442)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~-------~~~~~------------------------- 276 (442)
+++++.+.+ .++.+||+|+||.||++.|+++.. ..|++
T Consensus 256 ~~i~~~~~~----------~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~VkaI~ 325 (588)
T PRK00476 256 RHVFKEVLG----------VDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRVKAIR 325 (588)
T ss_pred HHHHHHHhC----------ccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeEEEEE
Confidence 999998875 234689999999999999986421 10110
Q ss_pred -----------CHHHHHHHHHhcCCC-----------C----------------------Cccccc--c-------cccH
Q psy8863 277 -----------NKLFLKSELKKINPK-----------F----------------------NQKKIL--N-------NLKK 303 (442)
Q Consensus 277 -----------~~~~l~~~~~~~~~~-----------~----------------------~~~~~~--~-------~~~~ 303 (442)
..+.+.+.++..|.. . ++++.+ + ...+
T Consensus 326 vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aL 405 (588)
T PRK00476 326 VPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDAL 405 (588)
T ss_pred ecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHH
Confidence 023343444433311 0 011110 0 1247
Q ss_pred HHHHHHHHHhh--hhcCCCCcEEEEcCCCCC------------CCCCcccCCC-------CC--ceeeEEEEEEcCEEee
Q psy8863 304 DILQLMLFEET--TETKLWNPTYITNYPTEI------------SPLARKSNIE-------NN--NITERFELFIIGNEIA 360 (442)
Q Consensus 304 g~l~~~~~~~~--~e~~~~~p~~v~~~P~~~------------~pf~~~~~~~-------~~--~~~~~fdl~~~G~Ei~ 360 (442)
|.++.++.+.+ +.+.-.+++||+|||... .||+++...+ || -.+++|||++||.||+
T Consensus 406 G~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~E~~ 485 (588)
T PRK00476 406 GALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGYELG 485 (588)
T ss_pred HHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeeeeec
Confidence 77777776643 333334699999999852 4999875511 33 3689999999999999
Q ss_pred ccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCC
Q psy8863 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440 (442)
Q Consensus 361 ~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~ 440 (442)
|||+|+||++.|+++|+.. ++.+++ ....+.|||+|++||+|||||||+|+|||+|+++|.+||||||+||++..
T Consensus 486 ~gs~ri~~~~~q~~~~~~~----~~~~~~-~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdvi~fp~~~~ 560 (588)
T PRK00476 486 GGSIRIHRPEIQEKVFEIL----GISEEE-AEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQS 560 (588)
T ss_pred cceEEeCCHHHHHHHHHHc----CCCHHH-HHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCccHHheeeccCCCC
Confidence 9999999999999999854 333222 22245899999999999999999999999999999999999999999865
Q ss_pred C
Q psy8863 441 E 441 (442)
Q Consensus 441 ~ 441 (442)
.
T Consensus 561 g 561 (588)
T PRK00476 561 A 561 (588)
T ss_pred c
Confidence 3
No 25
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=4.9e-83 Score=676.33 Aligned_cols=413 Identities=23% Similarity=0.449 Sum_probs=328.9
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~ 72 (442)
++|.+|+++|++|||++ +.+|||++++..+++.++.+++|+.||+|.|+|+|.++ ++|++||.+++
T Consensus 29 ~~R~~G~l~FidLRD~~-----G~iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~ 103 (706)
T PRK12820 29 AFRDHGELLFIHLRDRN-----GFIQAVFSPEAAPADVYELAASLRAEFCVALQGEVQKRLEETENPHIETGDIEVFVRE 103 (706)
T ss_pred EEEcCCCcEEEEEEeCC-----ccEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeEEeccCccccCCCCCCCcEEEEeeE
Confidence 68999999999999999 99999999876666788888999999999999999873 34789999999
Q ss_pred EEEEeccCCCCCcccc-------------cCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCc
Q psy8863 73 LKLITKSLRPLPNKFQ-------------KLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETP 139 (442)
Q Consensus 73 i~vl~~~~~~lP~~~~-------------~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TP 139 (442)
++||++|. ++|+... ...+.++|+++||||+| ++..+++|++||.+++++|+||.++||+||+||
T Consensus 104 i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTP 181 (706)
T PRK12820 104 LSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIR-RPAMQDHLAKRHRIIKCARDFLDSRGFLEIETP 181 (706)
T ss_pred EEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 99999986 4444321 12467899999999996 899999999999999999999999999999999
Q ss_pred eeec-CCCCCCCCceeeccCCCCccee-eecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCH
Q psy8863 140 ILHN-KPGGAIAKPFITHHNSLNMKMF-LRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNY 217 (442)
Q Consensus 140 iL~~-~~~g~~~~~f~~~~~~~~~~~~-L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~ 217 (442)
+|+. +++|+ ++|.+...+++..+| |+||||+|||++|++|++||||||||||+|+++++|+||||||||||+|+|+
T Consensus 182 iL~~s~~eGA--r~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d~ 259 (706)
T PRK12820 182 ILTKSTPEGA--RDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDE 259 (706)
T ss_pred ccccCCCCCC--cceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccceeeccCCH
Confidence 9995 56665 567666555556655 9999999999999999999999999999999998777999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCCCcccC------C--------------
Q psy8863 218 IWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQ------N-------------- 277 (442)
Q Consensus 218 ~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~------~-------------- 277 (442)
+|+|+++|+|++++++ +.+ ++++.||+|+||.||++.|+++ .+|+. +
T Consensus 260 ~dvm~l~E~li~~v~~-~~~----------~~~~~pf~r~ty~eA~~~yG~D--KPDlR~~~~l~d~~~~~~~~~f~~f~ 326 (706)
T PRK12820 260 EFIFELIEELTARMFA-IGG----------IALPRPFPRMPYAEAMDTTGSD--RPDLRFDLKFADATDIFENTRYGIFK 326 (706)
T ss_pred HHHHHHHHHHHHHHHH-hcC----------cCCCCCceEEEHHHHHHHhCCC--CCccccCcEEEEHHHHhccCCchhhh
Confidence 9999999999999986 211 3456899999999999999863 22221 0
Q ss_pred -------------------------HHH-HH-HHHHhcCCC---------------------------------CCcccc
Q psy8863 278 -------------------------KLF-LK-SELKKINPK---------------------------------FNQKKI 297 (442)
Q Consensus 278 -------------------------~~~-l~-~~~~~~~~~---------------------------------~~~~~~ 297 (442)
.+. +. +.++.+|.+ .+++++
T Consensus 327 ~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~ 406 (706)
T PRK12820 327 QILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDV 406 (706)
T ss_pred hhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCE
Confidence 111 22 333333211 011111
Q ss_pred c--c--cc------cHHHHHHHHHHhh--hhcCCCCcEEEEcCCCC-----------CCCCCcccCC-------CCC--c
Q psy8863 298 L--N--NL------KKDILQLMLFEET--TETKLWNPTYITNYPTE-----------ISPLARKSNI-------ENN--N 345 (442)
Q Consensus 298 ~--~--~~------~~g~l~~~~~~~~--~e~~~~~p~~v~~~P~~-----------~~pf~~~~~~-------~~~--~ 345 (442)
+ + .+ .+|.+..++.+.+ +.+....++||+|||.. ..||+++... +|| -
T Consensus 407 ~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~ 486 (706)
T PRK12820 407 IIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDL 486 (706)
T ss_pred EEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHh
Confidence 1 0 11 4677776666542 23333569999999994 2699987541 133 2
Q ss_pred eeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcC
Q psy8863 346 ITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 346 ~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g 425 (442)
.+.+|||++||.||+|||+|+||++.|.++|+.. ++..++ ....+.+||+|++||+|||||+|+|+|||+|+++|
T Consensus 487 ~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~l----g~~~~~-~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~ 561 (706)
T PRK12820 487 RSRAYDLVVNGEELGGGSIRINDKDIQLRIFAAL----GLSEED-IEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMILQ 561 (706)
T ss_pred hhheeeEEecceeeccceEEeCCHHHHHHHHHHc----CCCHHH-HHHHHHHHHHHHhcCCCCCCceeccHHHHHHHHcC
Confidence 4789999999999999999999999999999864 222221 22245799999999999999999999999999999
Q ss_pred CCCccccccCCCCCCC
Q psy8863 426 SKNIRDVILFPHLRNE 441 (442)
Q Consensus 426 ~~~Irdv~~FPr~~~~ 441 (442)
.+||||||+||++...
T Consensus 562 ~~sirdviaFPK~~~g 577 (706)
T PRK12820 562 TPSIREVIAFPKNRSA 577 (706)
T ss_pred CccHHHhcccCCCCCC
Confidence 9999999999998754
No 26
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.9e-82 Score=631.04 Aligned_cols=326 Identities=51% Similarity=0.850 Sum_probs=289.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceE
Q psy8863 107 NENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIF 186 (442)
Q Consensus 107 ~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf 186 (442)
||..+++|++||++++++|+||.++||+||+||+|+++++|+++++|.+..+++++++||+||||+|||+++++|++|||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf 80 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVY 80 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEE
Confidence 57789999999999999999999999999999999998888888999987778999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHH
Q psy8863 187 EINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKY 266 (442)
Q Consensus 187 ~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~ 266 (442)
+||||||||++++||||||||||||+++.+++|+|+++|++++++++++.+.+.+++.+..+.++.||+|+||.||++++
T Consensus 81 ~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~~ 160 (329)
T cd00775 81 EIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKEK 160 (329)
T ss_pred EEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCCccccCCCCceEEEHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877666666666667899999999999999
Q ss_pred CCCCCCcc---cCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCC
Q psy8863 267 TPQYNEID---LQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIEN 343 (442)
Q Consensus 267 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~ 343 (442)
. |+++.. ....+.++......+..+.. ..+++.++..++++.+++++++|+||+|||+.++|||+..+ +|
T Consensus 161 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~~~~ve~~~~~p~fi~~yP~~~~~f~~~~~-~~ 233 (329)
T cd00775 161 T-GIDFPELDLEQPEELAKLLAKLIKEKIEK-----PRTLGKLLDKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHR-SN 233 (329)
T ss_pred h-CCCcccccccCCHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHHHHHhccccCCCEEEECCChHhCcCcCcCC-CC
Confidence 6 665432 12233333333333334333 45789999999999999999999999999999999998766 88
Q ss_pred CceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHH
Q psy8863 344 NNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLL 423 (442)
Q Consensus 344 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l 423 (442)
+++++|||||++|+||+|||+|+||+++|+++|+++++.|+.+.++ ..++|+|||+|+++|+|||||||||+|||+|++
T Consensus 234 ~~~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~-~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~ 312 (329)
T cd00775 234 PGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDE-AMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLL 312 (329)
T ss_pred CCeeEEEEeEECCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCc-cccchHHHHHHHHCCCCCCCcEEecHHHHHHHH
Confidence 9999999999999999999999999999999999998887666555 455789999999999999999999999999999
Q ss_pred cCCCCccccccCCCCCC
Q psy8863 424 TNSKNIRDVILFPHLRN 440 (442)
Q Consensus 424 ~g~~~Irdv~~FPr~~~ 440 (442)
+|++|||||++|||+++
T Consensus 313 ~g~~~Irdv~~Fp~~~~ 329 (329)
T cd00775 313 TDSNSIRDVILFPAMRP 329 (329)
T ss_pred cCCCcHHhcccCCCCCC
Confidence 99999999999999874
No 27
>KOG0556|consensus
Probab=100.00 E-value=1.3e-82 Score=612.55 Aligned_cols=393 Identities=24% Similarity=0.421 Sum_probs=333.7
Q ss_pred ccccCCeEEEEEecCCCCCCCccEEEEEeCC---ccCchhhhhhcCCCCCcEEEEEEEEeecC-------CceeEEEEeE
Q psy8863 3 KRVMGKISFIMLQDTSGPDSNGKIQLYISNE---IIGKNLYTDFKNYDIGDIIGAKGTLFKTN-------TGELSIKVSS 72 (442)
Q Consensus 3 ~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~---~~~~~~~~~~~~L~~gs~V~V~G~v~~~~-------~~~~el~~~~ 72 (442)
-|..||++|+.||++. .+|||++..+ .+++++.++..+|+.||+|.|.|+|++.+ .+.+||++..
T Consensus 94 sr~~GK~~FlvLRq~~-----~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~ 168 (533)
T KOG0556|consen 94 SRLKGKLCFLVLRQQG-----STVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCTVQDVEIHVRK 168 (533)
T ss_pred ccccceEEEEEEeccC-----ceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccccceeEEEEEE
Confidence 3667999999999999 9999999754 36788999999999999999999998753 2689999999
Q ss_pred EEEEeccCCCCCcccccC-------------------CchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCc
Q psy8863 73 LKLITKSLRPLPNKFQKL-------------------SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDF 133 (442)
Q Consensus 73 i~vl~~~~~~lP~~~~~~-------------------~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF 133 (442)
+.|+|.+...||+...++ .+.++|++||.|||| +|+.+++|++++.+..++|+||..+||
T Consensus 169 iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLR-tptnqAiFriq~gvc~~FRe~L~~kgF 247 (533)
T KOG0556|consen 169 IYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLR-TPTNQAIFRIQAGVCFAFREYLRSKGF 247 (533)
T ss_pred EEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecc-cccchheeehHHHHHHHHHHHHHhcCc
Confidence 999999998899754322 146799999999997 899999999999999999999999999
Q ss_pred EEecCceeecC--CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhh
Q psy8863 134 MEVETPILHNK--PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEF 210 (442)
Q Consensus 134 ~EV~TPiL~~~--~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~ 210 (442)
+|||||+|.+. +||+ ..|.+ +||+.++||+||||||+||+++++++|||+|||+||||++++ ||++||+.||.
T Consensus 248 ~EIhTpKli~asSEGGa--nvF~v--~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~ 323 (533)
T KOG0556|consen 248 VEIHTPKLIGASSEGGA--NVFRV--SYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDL 323 (533)
T ss_pred ceecccccccccCCCCc--eeEEE--EeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcch
Confidence 99999999964 5555 57865 589999999999999999999999999999999999999997 99999999999
Q ss_pred hhccC-CHHHHHHHHHHHHHHHHHHhhcCcee-------ecCCcccccCCCccceeHHHHHHHHCC-CCCCcccCCHHHH
Q psy8863 211 YAAYT-NYIWLMKFTEKMIKKIIMDCIGTTKI-------DYQGRLLDFSKSFEKLTIIEAIKKYTP-QYNEIDLQNKLFL 281 (442)
Q Consensus 211 e~~~~-~~~dl~~~~e~li~~i~~~~~~~~~~-------~~~~~~~~~~~pf~rit~~ea~~~~~~-~~~~~~~~~~~~l 281 (442)
||+|. +|+++|+++.+++.++++.+.+++.. +|..+.+.|..|--|++|.|++.++.. |.+.
T Consensus 324 EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLreaGvE~--------- 394 (533)
T KOG0556|consen 324 EMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLREAGVEM--------- 394 (533)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHHcCccc---------
Confidence 99997 69999999999999999999887532 233345567778889999999997764 4332
Q ss_pred HHHHHhcCCCCCcccccc---cccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEE
Q psy8863 282 KSELKKINPKFNQKKILN---NLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNE 358 (442)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~---~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~E 358 (442)
.+.++++ +.-+|+++.+.+ ...+..+.+||...+|||.+++|+||.++++||++++|.|
T Consensus 395 -----------g~~dDlsTe~Ek~LG~lV~eky-------~tdfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRGeE 456 (533)
T KOG0556|consen 395 -----------GDEDDLSTESEKKLGQLVREKY-------DTDFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRGEE 456 (533)
T ss_pred -----------CCccccCChhHHHHHHHHHHHh-------CCcEEEEccCccccccccccCCCCCCCcccchhheechhh
Confidence 2211111 334566554432 2245566789999999999999899999999999999999
Q ss_pred eeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCC
Q psy8863 359 IANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHL 438 (442)
Q Consensus 359 i~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~ 438 (442)
|.+|.||+|||+.+.+|.++. |.++ . .-..|+++|+||+|||||+|||+||++|++||+.|||.+++|||+
T Consensus 457 IlSGAQRIhdpe~L~era~~h------Gid~-~--~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRD 527 (533)
T KOG0556|consen 457 ILSGAQRIHDPELLVERAKEH------GIDP-S--KISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRD 527 (533)
T ss_pred hhccccccCCHHHHHHHHHHc------CCCH-H--HHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCC
Confidence 999999999999987776643 3333 1 227899999999999999999999999999999999999999999
Q ss_pred CCC
Q psy8863 439 RNE 441 (442)
Q Consensus 439 ~~~ 441 (442)
+..
T Consensus 528 PkR 530 (533)
T KOG0556|consen 528 PKR 530 (533)
T ss_pred ccc
Confidence 853
No 28
>KOG0554|consensus
Probab=100.00 E-value=4.5e-81 Score=602.34 Aligned_cols=387 Identities=22% Similarity=0.352 Sum_probs=321.8
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC--CceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN--TGELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~--~~~~el~~~~i~vl~~~ 79 (442)
++|.+|+++|++|+||+ |...+|||++++. .+.+.+|++|.|+|.+.-++ .+++|+.++++.+++++
T Consensus 31 svr~~~~~~Fl~i~DGs---~~~~lQvVv~~~~--------~q~la~Gt~i~~~g~l~~~~~~~q~iel~~eki~~vG~v 99 (446)
T KOG0554|consen 31 SVRKLKKVTFLDINDGS---CPSPLQVVVDSEQ--------SQLLATGTCISAEGVLKVSKGAKQQIELNAEKIKVVGTV 99 (446)
T ss_pred hcccccceEEEEecCCC---CCcceEEEechHH--------hhhccccceEEEEeeEEeccchheeeeeeeeEEEEEeec
Confidence 68999999999999999 7799999998732 36799999999999987665 36899999999999998
Q ss_pred CC--CCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCCCCCceeec
Q psy8863 80 LR--PLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKPFITH 156 (442)
Q Consensus 80 ~~--~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~~~~~f~~~ 156 (442)
.. |+|++.. ..+...+.-||+.| +....+++|+||.+..++++||.+++|++|+||+||++ |+|++ +.|.+.
T Consensus 100 ~~~ypl~Kk~l---t~e~LR~~~HLR~R-t~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaG-E~F~vt 174 (446)
T KOG0554|consen 100 DESYPLQKKKL---TPEMLRDKLHLRSR-TAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAG-EVFQVT 174 (446)
T ss_pred CCCCCCccccC---CHHHHhhcccccch-hhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCc-ceEEEE
Confidence 65 4555543 34555677777775 67889999999999999999999999999999999975 77776 788753
Q ss_pred ------cCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCC-HHHHHHHHHHHH
Q psy8863 157 ------HNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTN-YIWLMKFTEKMI 228 (442)
Q Consensus 157 ------~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~-~~dl~~~~e~li 228 (442)
.++||+++||++|.|+|++. |++++.|||++||+||||++++ |||+||||+|.|++|++ ++|+|+++|.++
T Consensus 175 t~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~ 253 (446)
T KOG0554|consen 175 TLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYI 253 (446)
T ss_pred ecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999997 5789999999999999999996 99999999999999997 999999999999
Q ss_pred HHHHHHhhcCce--eecCCcc----------cccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCccc
Q psy8863 229 KKIIMDCIGTTK--IDYQGRL----------LDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKK 296 (442)
Q Consensus 229 ~~i~~~~~~~~~--~~~~~~~----------~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 296 (442)
+++++.++++|. .++..+. .-...+|.+|||+||++.+.+.. ...++.++
T Consensus 254 K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~----------------t~~fk~~~-- 315 (446)
T KOG0554|consen 254 KHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAV----------------TKKFKTPP-- 315 (446)
T ss_pred HHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhc----------------ccccccCc--
Confidence 999999998864 2332211 12345688999999999776311 01123333
Q ss_pred ccccccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHH
Q psy8863 297 ILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVR 375 (442)
Q Consensus 297 ~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~ 375 (442)
.|+. .+..++...+++..++.|+||+|||+.++||||..+ +++..+.+|||++|| +|++|||+|+.+ .++
T Consensus 316 ---kwG~-~l~~ehe~yL~~~~~~~PVfV~dYP~~iKpFYMr~n-~~~~tVaa~DlLVP~vGEliGGSlREe~----~~~ 386 (446)
T KOG0554|consen 316 ---KWGI-DLSTEHEKYLVEECFKKPVFVTDYPKGIKPFYMRLN-DDGKTVAAFDLLVPGVGELIGGSLREER----KAR 386 (446)
T ss_pred ---cccc-ccchhhHHHHHHHhcCCCEEEEeccccccceEEEec-CCCCeeEEEEeecccchhhcCcccchhh----HHH
Confidence 3432 466778888888888899999999999999999988 555688999999999 599999999654 333
Q ss_pred HHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 376 FKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 376 ~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+.++++..++ + +|||+++|||.+||||||||+||++++++|.+||||||||||.+.+
T Consensus 387 ----l~e~g~~~~~----~-eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s 443 (446)
T KOG0554|consen 387 ----LKERGLTREE----L-EWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGS 443 (446)
T ss_pred ----HHhcCCCccc----c-ceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCccc
Confidence 3444554432 3 7999999999999999999999999999999999999999998764
No 29
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=4.1e-80 Score=618.99 Aligned_cols=329 Identities=37% Similarity=0.575 Sum_probs=261.4
Q ss_pred chhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeec---cCCCCcceeeec
Q psy8863 92 NQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITH---HNSLNMKMFLRI 168 (442)
Q Consensus 92 ~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~---~~~~~~~~~L~~ 168 (442)
+.++|+++||||+| ++..+++|++||.+++++|+||.++||+||+||+|+++.+++++++|.|. ..++++++||+|
T Consensus 1 ~~e~~~~~r~l~~r-~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLR-TPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred Chhhhhhccceecc-CcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 35789999999997 78999999999999999999999999999999999986555577999987 457889999999
Q ss_pred CHHHHHHHHHhccCCceEEEecccccCCC-CCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcc
Q psy8863 169 APELYLKRLIIGGFNKIFEINKNFRNEGI-SPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRL 247 (442)
Q Consensus 169 Spql~lk~ll~~g~~rvf~i~~~FR~E~~-~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~ 247 (442)
|||+|||+++++|++|||+||||||+|++ +.||+|||||||||++|+|++++|+++|+||+++++++.++.+.. .. .
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~-~~-~ 157 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKEL-SL-N 157 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHH-HT-C
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCccc-cc-c
Confidence 99999999999999999999999999999 569999999999999999999999999999999999987542111 11 4
Q ss_pred cccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHh-hhhcCCCCcEEEE
Q psy8863 248 LDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEE-TTETKLWNPTYIT 326 (442)
Q Consensus 248 ~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-~~e~~~~~p~~v~ 326 (442)
+++++||+++||.||++.+.. .. .++.....+.+.....+. ...+|.++....+. +++.....|+||+
T Consensus 158 ~~~~~~f~ri~~~ea~~~~~~-~~-~~~~~~~~l~~~~~~~~~---------~~~~~~~l~~~~e~~L~~~~~~~p~fI~ 226 (335)
T PF00152_consen 158 IDLPKPFPRITYEEAFEIYGG-DK-PDLRFDEELDDLAEIEEL---------EFEVGRLLSEEVEPYLVEKYFTDPVFIT 226 (335)
T ss_dssp EESSSS-EEEEHHHHHHHHHH-TT-TTTTTCHHHHHHHHHHHT---------THHCHHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccccCCceEeeehHHHHHhhc-cc-ccchhHHHHHHHHHHhcc---------cchHHHHHHHHHHHHhhhcccCCcEEEE
Confidence 566788999999999999984 33 222222223332222111 12235555555444 4555678899999
Q ss_pred cCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCC
Q psy8863 327 NYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGM 406 (442)
Q Consensus 327 ~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~ 406 (442)
|||...+|||++.++++++++++||||++|+||+|||+|+||+++|+++|+++... +++ .++.++||++|+++|+
T Consensus 227 ~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r~~~~~~~----~~~-~~~~~~~yl~~~~~G~ 301 (335)
T PF00152_consen 227 DYPAEQSPFYKPPNDDDPGVAERFDLYIPGGEIANGSQREHDPEELRERFEEQGID----PEE-EMPIDEWYLEALKYGM 301 (335)
T ss_dssp EEBGGGSTTTBBBSSSTTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHTTHH----GGG-SHHHGHHHHHHHHTT-
T ss_pred ecccccCcccccccccccccccceeEEEeCEEEehHHhhhhHHHHHHHHhhhcccc----ccc-ccchhHhHHHhhhccC
Confidence 99999999999998445599999999999999999999999999999999987543 222 3345799999999999
Q ss_pred CCccceehhHHHHHHHHcCCCCccccccCCCCC
Q psy8863 407 PPASGCGIGVDRLIMLLTNSKNIRDVILFPHLR 439 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~ 439 (442)
|||||||||+|||+|+++|++|||||++|||++
T Consensus 302 pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~ 334 (335)
T PF00152_consen 302 PPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDR 334 (335)
T ss_dssp -SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT
T ss_pred cccCcceehHHHHHHHHcCCCcHHheecCCCCC
Confidence 999999999999999999999999999999986
No 30
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=3.4e-77 Score=587.34 Aligned_cols=298 Identities=34% Similarity=0.559 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecCC-CCCCCCceeecc---CCCCcceeeecCHHHHHHHHHhccCCceEEEe
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNKP-GGAIAKPFITHH---NSLNMKMFLRIAPELYLKRLIIGGFNKIFEIN 189 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~-~g~~~~~f~~~~---~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~ 189 (442)
+++||.+++++|+||.++||+||+||+|++++ +++++++|.|++ +++++++||+||||+|+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 47899999999999999999999999999874 556789998854 34568999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCC
Q psy8863 190 KNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQ 269 (442)
Q Consensus 190 ~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~ 269 (442)
||||||++++||||||||||||+++.|++|+|+++|++++++++. ++.||++|||.||++.+. |
T Consensus 81 p~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~---------------~~~~~~~it~~ea~~~~~-~ 144 (304)
T TIGR00462 81 KVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD---------------PFAPWERLSYQEAFLRYA-G 144 (304)
T ss_pred CceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------cCCCcEEEEHHHHHHHHh-C
Confidence 999999998999999999999999999999999999999999875 247899999999999998 7
Q ss_pred CCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCC--CCcEEEEcCCCCCCCCCcccCCCCCcee
Q psy8863 270 YNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKL--WNPTYITNYPTEISPLARKSNIENNNIT 347 (442)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~--~~p~~v~~~P~~~~pf~~~~~~~~~~~~ 347 (442)
+++... +.+.+..++++.|+.... .++++++..+++..++++++ .+|+||+|||..++|||+..+ +||+++
T Consensus 145 ~~~~~~-~~~~~~~~~~~~g~~~~~-----~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~~~~~-~~~~~~ 217 (304)
T TIGR00462 145 IDPLTA-SLDELAAAAAAHGVRASE-----EDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISP-DDPRVA 217 (304)
T ss_pred CCcccC-CHHHHHHHHHHcCCCCCC-----CCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCccccC-CCCCee
Confidence 776543 466777788888877655 56889999999999999988 569999999999999998665 899999
Q ss_pred eEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCC
Q psy8863 348 ERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSK 427 (442)
Q Consensus 348 ~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~ 427 (442)
+|||||++|+||+|||+|+||+++|+++|+++++.+...+.+ ..++|+|||+|+++|+|||||||||+|||+|+++|++
T Consensus 218 ~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~-~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~ 296 (304)
T TIGR00462 218 ERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLP-RYPLDERFLAALEAGLPECSGVALGVDRLLMLALGAD 296 (304)
T ss_pred EEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCC
Confidence 999999999999999999999999999999988776433333 3457889999999999999999999999999999999
Q ss_pred CccccccC
Q psy8863 428 NIRDVILF 435 (442)
Q Consensus 428 ~Irdv~~F 435 (442)
|||||++|
T Consensus 297 ~Ir~vi~F 304 (304)
T TIGR00462 297 SIDDVLAF 304 (304)
T ss_pred chhhcccC
Confidence 99999998
No 31
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.8e-77 Score=594.23 Aligned_cols=310 Identities=29% Similarity=0.473 Sum_probs=264.1
Q ss_pred chhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHH
Q psy8863 92 NQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPE 171 (442)
Q Consensus 92 ~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spq 171 (442)
+.++++++||||+| ++..++++++||.+++++|+||.++||+||+||+|+++.+++++++|.+ +++++++||+||||
T Consensus 3 ~~~~~~~~r~l~lr-~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~yL~~Spq 79 (322)
T cd00776 3 NLETLLDNRHLDLR-TPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV--SYFGKPAYLAQSPQ 79 (322)
T ss_pred ChHhhhhCceeeeC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc--ccCCCcceecCCHH
Confidence 46789999999998 9999999999999999999999999999999999998777777889976 57899999999999
Q ss_pred HHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccC-CHHHHHHHHHHHHHHHHHHhhcCceee--c----
Q psy8863 172 LYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYT-NYIWLMKFTEKMIKKIIMDCIGTTKID--Y---- 243 (442)
Q Consensus 172 l~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~-~~~dl~~~~e~li~~i~~~~~~~~~~~--~---- 243 (442)
+|||+++++ ++|||+||||||||++++ ||+|||||||||++|+ |++|+|+++|++++++++.+.+.+... +
T Consensus 80 l~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~~ 158 (322)
T cd00776 80 LYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQL 158 (322)
T ss_pred HHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhcc
Confidence 999999876 999999999999999886 9999999999999999 999999999999999999998776432 1
Q ss_pred CCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCC-CCc
Q psy8863 244 QGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKL-WNP 322 (442)
Q Consensus 244 ~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~-~~p 322 (442)
.....++..||+||||.||++++. +.+.. .+. .+|..+...++..+...+ ..|
T Consensus 159 ~~~~~~~~~~~~rit~~eA~~~l~-~~~~~----------------~~~---------~~~~~l~~~~e~~l~~~~~~~p 212 (322)
T cd00776 159 NRELLKPLEPFPRITYDEAIELLR-EKGVE----------------EEV---------KWGEDLSTEHERLLGEIVKGDP 212 (322)
T ss_pred CcccccCCCCceEEEHHHHHHHHH-HcCCC----------------CCC---------CccchhcHHHHHHHHHHhCCCc
Confidence 112345678999999999999876 22210 011 122223333344444444 789
Q ss_pred EEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHH
Q psy8863 323 TYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHA 401 (442)
Q Consensus 323 ~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~ 401 (442)
+||+|||.+++|||++.++++|++++|||||++| +||+|||+|+||+++|+++++++ +.++ .++ +|||+|
T Consensus 213 ~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~------g~~~--~~~-~~yl~a 283 (322)
T cd00776 213 VFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEH------GLDP--ESF-EWYLDL 283 (322)
T ss_pred EEEECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHc------CCCh--HHH-HHHHHH
Confidence 9999999999999887765788999999999999 99999999999999999999864 2222 123 899999
Q ss_pred HhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCC
Q psy8863 402 LEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440 (442)
Q Consensus 402 ~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~ 440 (442)
+++|+|||||||||+|||+|+++|.+|||||++|||++.
T Consensus 284 ~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 284 RKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred HHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 999999999999999999999999999999999999873
No 32
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=3.8e-75 Score=579.66 Aligned_cols=311 Identities=22% Similarity=0.290 Sum_probs=259.9
Q ss_pred CchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCCCcee-eccCCCCcce
Q psy8863 91 SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIAKPFI-THHNSLNMKM 164 (442)
Q Consensus 91 ~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~~~f~-~~~~~~~~~~ 164 (442)
.+.++|+++|++++| ++..+++|++||++++++|+||.++||+||+||+|+++ .+|+. .+|. ...+++++++
T Consensus 8 ~~~~~~~~~r~~~lr-~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~~ 85 (335)
T PRK06462 8 KEYEEFLRMSWKHIS-SEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSD-LPVKQISIDFYGVEY 85 (335)
T ss_pred cchhhhhhhHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcccc-CCccccccccCCCce
Confidence 356889999999996 99999999999999999999999999999999999965 23333 5564 3457889999
Q ss_pred eeecCHHHHHHHHHhccCCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce-
Q psy8863 165 FLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK- 240 (442)
Q Consensus 165 ~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~- 240 (442)
||++|||+|||+ +++|++|||+||||||||++++ ||+|||||||||++|.|++|+|+++|+|++++++.+.+++.
T Consensus 86 yL~~Spql~k~l-l~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~ 164 (335)
T PRK06462 86 YLADSMILHKQL-ALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHED 164 (335)
T ss_pred eeccCHHHHHHH-HHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999665 5677999999999999999998 99999999999999999999999999999999999988765
Q ss_pred -eecCCcc-cccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcC
Q psy8863 241 -IDYQGRL-LDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETK 318 (442)
Q Consensus 241 -~~~~~~~-~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~ 318 (442)
+.+.+.. ..++.||+||||.||++++.. .|.+.. .++.+....+.+++..
T Consensus 165 ~i~~~~~~~~~~~~p~~rit~~eA~~~l~~-------------------~~~~~~---------~~~~l~~~~E~~l~~~ 216 (335)
T PRK06462 165 ELEFFGRDLPHLKRPFKRITHKEAVEILNE-------------------EGCRGI---------DLEELGSEGEKSLSEH 216 (335)
T ss_pred HHHhcCCccccCCCCCeEEEHHHHHHHHHh-------------------cCCCcc---------hHHHHhHHHHHHHHHH
Confidence 2233332 245689999999999986552 111111 1223344455556666
Q ss_pred CCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEc--CEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcH
Q psy8863 319 LWNPTYITNYPTEISPLARKSNIENNNITERFELFII--GNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDT 396 (442)
Q Consensus 319 ~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~--G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~ 396 (442)
+.+|+||+|||.+++|||++.+++++++++|||||++ ++||+||++|+|+++++.++++++ +.++ . .++
T Consensus 217 ~~~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~------g~~~-~--~~~ 287 (335)
T PRK06462 217 FEEPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREH------GVDP-E--KYK 287 (335)
T ss_pred hCCCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHc------CCCh-H--HHH
Confidence 6789999999999999999876588999999999995 479999999999999987776543 3333 2 348
Q ss_pred HHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 397 DYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 397 ~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
|||+|+++|+|||||||||+|||+|+++|++|||||++|||+++.
T Consensus 288 ~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~~FPr~~g~ 332 (335)
T PRK06462 288 WYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPGI 332 (335)
T ss_pred HHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheeeeccCCCCC
Confidence 999999999999999999999999999999999999999999875
No 33
>KOG0555|consensus
Probab=100.00 E-value=2.2e-73 Score=546.65 Aligned_cols=393 Identities=21% Similarity=0.344 Sum_probs=332.6
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC-----CceeEEEEeEEEEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN-----TGELSIKVSSLKLI 76 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~-----~~~~el~~~~i~vl 76 (442)
++|.+++++||+||||+ +.||||++.+.. +.++.+ .|+.+|+|.|.|++++.+ .|+.||.|+.++|+
T Consensus 134 rlR~qk~l~FivLrdg~-----gflqCVl~~kl~--~~yd~~-~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~Eii 205 (545)
T KOG0555|consen 134 RLRRQKSLIFIVLRDGT-----GFLQCVLSDKLC--QSYDAL-TLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWEII 205 (545)
T ss_pred hhhhcCceEEEEEecCC-----ceEEEEEcchhh--hhhccc-cccccceEEEEEEEecCcCCCCCCCCceEEeeeeeee
Confidence 47899999999999999 999999998754 233333 689999999999998764 37899999999999
Q ss_pred eccCCC-CCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec--CCCCCCCCce
Q psy8863 77 TKSLRP-LPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN--KPGGAIAKPF 153 (442)
Q Consensus 77 ~~~~~~-lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~--~~~g~~~~~f 153 (442)
+.|..+ ..+..+.-++++..++||||-+| ....+.++|+|+.+++++|++|.+.|++||.+|.|.. .+||+. .|
T Consensus 206 g~Apag~~~n~lne~s~~~~~LdnrHl~iR-ge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsT--LF 282 (545)
T KOG0555|consen 206 GLAPAGGFDNPLNEESDVDVLLDNRHLVIR-GENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGST--LF 282 (545)
T ss_pred cccCCCcccccccccCCcceEeccceeEEe-chhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcce--EE
Confidence 987542 22233334678899999999996 7888999999999999999999999999999999986 477774 45
Q ss_pred eeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHHH
Q psy8863 154 ITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKII 232 (442)
Q Consensus 154 ~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~ 232 (442)
+ .+|+|.++||+||+||||+..+ ..+++||+|.++||||.+++ |||+|||++|+|++|.+++++++.+|.|+...+
T Consensus 283 k--ldYyGEeAyLTQSSQLYLEtcl-pAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~v 359 (545)
T KOG0555|consen 283 K--LDYYGEEAYLTQSSQLYLETCL-PALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSV 359 (545)
T ss_pred e--ecccCchhhccchhHHHHHHhh-hhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHH
Confidence 4 4799999999999999999976 57899999999999999997 999999999999999999999999999999999
Q ss_pred HHhhcCcee---ecCCcccc-cCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHH
Q psy8863 233 MDCIGTTKI---DYQGRLLD-FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQL 308 (442)
Q Consensus 233 ~~~~~~~~~---~~~~~~~~-~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~ 308 (442)
.+++++..- .....+.. .++||.||.|.||++.+.+ +++..+.+. ...+|+.+.
T Consensus 360 dr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke-------------------~~vk~edg~---~fefGdDI~ 417 (545)
T KOG0555|consen 360 DRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLKE-------------------HDVKKEDGT---DFEFGDDIP 417 (545)
T ss_pred HHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHHh-------------------cCCcCccCc---ccccccchh
Confidence 999986432 11111111 3579999999999997663 233222211 345667777
Q ss_pred HHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHHHhhHHHhhccC
Q psy8863 309 MLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKNQIDLKNEIN 387 (442)
Q Consensus 309 ~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~ 387 (442)
+..+..+....+.|+|+++||.++++|||+.+.+|++++++.|+++|| +||+|||+|+.|.+++.+.|+.. |.
T Consensus 418 eAaER~mtdtIg~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRe------gI 491 (545)
T KOG0555|consen 418 EAAERKMTDTIGVPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKRE------GI 491 (545)
T ss_pred hHHHHhhhhhcCCceEEeeccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhc------CC
Confidence 778888888899999999999999999999998999999999999999 59999999999999999998854 33
Q ss_pred CccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCC
Q psy8863 388 GELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLR 439 (442)
Q Consensus 388 ~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~ 439 (442)
++ .. | .||++.+|||..||||+|||+||++||||+.-+||||.+|||-.
T Consensus 492 d~-~p-Y-YWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv 540 (545)
T KOG0555|consen 492 DP-DP-Y-YWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFV 540 (545)
T ss_pred CC-CC-c-eEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhh
Confidence 43 22 3 59999999999999999999999999999999999999999954
No 34
>KOG2411|consensus
Probab=100.00 E-value=7e-72 Score=549.48 Aligned_cols=412 Identities=23% Similarity=0.458 Sum_probs=322.4
Q ss_pred ccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeEE
Q psy8863 3 KRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSSL 73 (442)
Q Consensus 3 ~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~i 73 (442)
.|.+|.+.|..|||.. |.+|+.++.+..+. .....+.++.||+|.|.|+++.. ++|.+|+.++++
T Consensus 59 ~~~~k~~~F~~LRD~~-----G~vq~lls~~s~~l-~~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km~tg~vev~~e~~ 132 (628)
T KOG2411|consen 59 HRVHKMLTFFNLRDAY-----GIVQQLLSPDSFPL-AQKLENDVPLEDVVQVEGTVVSRPNESINSKMKTGFVEVVAEKV 132 (628)
T ss_pred eeccccceEEEeeccC-----cceEEEecchhhhH-HhcccCCCChhheEeeeeeEecccccccCccccccceEEEeeee
Confidence 4667899999999999 99999999876431 22344678999999999998743 358899999999
Q ss_pred EEEeccCCCCCccccc------CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhC-CcEEecCceee-cCC
Q psy8863 74 KLITKSLRPLPNKFQK------LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKN-DFMEVETPILH-NKP 145 (442)
Q Consensus 74 ~vl~~~~~~lP~~~~~------~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~-gF~EV~TPiL~-~~~ 145 (442)
++++++...+|+.... .....+|+++|||||| ++.++..+|+||.+...||+||.++ ||+||+||.|- .+|
T Consensus 133 ~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR-~~kmq~nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrTP 211 (628)
T KOG2411|consen 133 EVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLR-RPKMQNNLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRTP 211 (628)
T ss_pred EEecCccCCCccchhhhhhhhccccccccchhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHhhhcCeeeccCcchhccCC
Confidence 9999999888875432 2456789999999997 8999999999999999999999985 59999999999 589
Q ss_pred CCCCCCceeeccCCCCccee-eecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHH
Q psy8863 146 GGAIAKPFITHHNSLNMKMF-LRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFT 224 (442)
Q Consensus 146 ~g~~~~~f~~~~~~~~~~~~-L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~ 224 (442)
||| +.|.+....-...+| |.||||+|+|+||++|++|+|||++|||+|+++..++|||||+|+||+|++.+|+|+++
T Consensus 212 gGA--~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~dim~li 289 (628)
T KOG2411|consen 212 GGA--REFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQEDIMKLI 289 (628)
T ss_pred Ccc--ceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEeccCHHHHHHHH
Confidence 997 788776554433344 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCCCccc------CCHH-------------------
Q psy8863 225 EKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDL------QNKL------------------- 279 (442)
Q Consensus 225 e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~------~~~~------------------- 279 (442)
|++++++|.+..+ +....||+||||++|+.+|+.+. +|. .+..
T Consensus 290 Edll~~~ws~~k~----------~~l~~PF~riTY~~Am~~YG~DK--PD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~ 357 (628)
T KOG2411|consen 290 EDLLRYVWSEDKG----------IQLPVPFPRITYADAMDKYGSDK--PDTRFPLKLKDVSESISKSFEEALLSDGLISV 357 (628)
T ss_pred HHHHHHhchhhcC----------CCCCCCcccccHHHHHHHhCCCC--CcccCCcEecchHHhhhhhhhhhhhcCCccce
Confidence 9999999998654 35578999999999999998632 211 1100
Q ss_pred ---------------HHHHHHHhcC------CC--------------------------------CCcccc--cc-----
Q psy8863 280 ---------------FLKSELKKIN------PK--------------------------------FNQKKI--LN----- 299 (442)
Q Consensus 280 ---------------~l~~~~~~~~------~~--------------------------------~~~~~~--~~----- 299 (442)
..+...+..+ .. ...+++ +|
T Consensus 358 ~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~ 437 (628)
T KOG2411|consen 358 EIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKV 437 (628)
T ss_pred EEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCc
Confidence 0000011111 00 001111 01
Q ss_pred --cccHHHHHHHHHHhhhh----cCCCCcEEEEcCCCCC-------------CCCCcccCC------CCC--ceeeEEEE
Q psy8863 300 --NLKKDILQLMLFEETTE----TKLWNPTYITNYPTEI-------------SPLARKSNI------ENN--NITERFEL 352 (442)
Q Consensus 300 --~~~~g~l~~~~~~~~~e----~~~~~p~~v~~~P~~~-------------~pf~~~~~~------~~~--~~~~~fdl 352 (442)
...+|++.-.++..++. +..-...||+|||... .||+++... ..+ -....|||
T Consensus 438 ~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDl 517 (628)
T KOG2411|consen 438 SVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDL 517 (628)
T ss_pred cCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeee
Confidence 12466665444443332 3334589999999963 488877651 111 24678999
Q ss_pred EEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCcccc
Q psy8863 353 FIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDV 432 (442)
Q Consensus 353 ~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv 432 (442)
++||+|++|||.|+||++.|+..|+..+.. ++ .+.-.++.|+|+.+|+|||||+|+|+|||+|++||..+||||
T Consensus 518 V~NGvElGGGSiRIhn~diQr~vLe~iLk~-----p~-~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDV 591 (628)
T KOG2411|consen 518 VVNGVELGGGSIRIHNPDIQRYVLEDILKI-----PE-DAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDV 591 (628)
T ss_pred EEccEeecCceeEecCHHHHHHHHHHHhcC-----ch-hhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchhee
Confidence 999999999999999999999999866432 22 222225889999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q psy8863 433 ILFPHLRNE 441 (442)
Q Consensus 433 ~~FPr~~~~ 441 (442)
|+||+....
T Consensus 592 IAFPKt~~G 600 (628)
T KOG2411|consen 592 IAFPKTTTG 600 (628)
T ss_pred eeccccCCc
Confidence 999998654
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=5.6e-72 Score=540.49 Aligned_cols=269 Identities=44% Similarity=0.810 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccc
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFR 193 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR 193 (442)
|++||++++.+|+||.++||+||+||+|+++++|.++++|.+....+|+++||+||||+|+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 47899999999999999999999999999876677778998754335899999999999999999999999999999999
Q ss_pred cCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCCCc
Q psy8863 194 NEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEI 273 (442)
Q Consensus 194 ~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~ 273 (442)
+|..+.+|++||||||||++|.|++|+|+++|++++++++++.+.+...+.....+++.||+||||.||++.++
T Consensus 81 ~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~rit~~ea~~~~~------ 154 (269)
T cd00669 81 NEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALERYG------ 154 (269)
T ss_pred CCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCceEeeHHHHHHHhC------
Confidence 99777899999999999999999999999999999999999987765444333345778999999999997432
Q ss_pred ccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEE
Q psy8863 274 DLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELF 353 (442)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~ 353 (442)
.|+||+|||...+|||++.+++++++++|||||
T Consensus 155 -----------------------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~ 187 (269)
T cd00669 155 -----------------------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLF 187 (269)
T ss_pred -----------------------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEe
Confidence 479999999998999987664789999999999
Q ss_pred EcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccc
Q psy8863 354 IIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVI 433 (442)
Q Consensus 354 ~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~ 433 (442)
++|+||+|||+|+||+++|+++++++...+. + ..+.++|||+|+++|+|||||||||+|||+|+++|.+|||||+
T Consensus 188 ~~g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~----~-~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~ 262 (269)
T cd00669 188 INGVEVGNGSSRLHDPDIQAEVFQEQGINKE----A-GMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVI 262 (269)
T ss_pred eCCEEEeeCchhcCCHHHHHHHHHHhCcChh----h-ccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcc
Confidence 9999999999999999999999987732211 1 1225689999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy8863 434 LFPHLRN 440 (442)
Q Consensus 434 ~FPr~~~ 440 (442)
+|||+++
T Consensus 263 ~FPr~~~ 269 (269)
T cd00669 263 AFPKMRR 269 (269)
T ss_pred cCCCCCC
Confidence 9999874
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=4.5e-71 Score=544.40 Aligned_cols=296 Identities=33% Similarity=0.537 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCCCCCceeeccC----CCCcceeeecCHHHHHHHHHhccCCce
Q psy8863 111 RKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKPFITHHN----SLNMKMFLRIAPELYLKRLIIGGFNKI 185 (442)
Q Consensus 111 ~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~~~~~f~~~~~----~~~~~~~L~~Spql~lk~ll~~g~~rv 185 (442)
..+|++|+++++.+|+||.++||+||+||+|+.. ..++++.+|.+.+. ..|+.+||+||||+++|++++++++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 3689999999999999999999999999999864 45677788877533 237899999999999999999999999
Q ss_pred EEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHH
Q psy8863 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKK 265 (442)
Q Consensus 186 f~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~ 265 (442)
|+||||||+|++++||++||||||||+++.|++|+|+++|+|+++++. ..||+++||.+|++.
T Consensus 82 f~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~-----------------~~~~~~i~~~eaf~~ 144 (306)
T PRK09350 82 FQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----------------CEPAESLSYQQAFLR 144 (306)
T ss_pred EEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHh-----------------cCCceEEEHHHHHHH
Confidence 999999999999889999999999999999999999999999998865 257999999999999
Q ss_pred HCCCCCCcccCCHHHHHHHHHhcCC--CCCcccccccccHHHHHHHHHHhhhhcCCC--CcEEEEcCCCCCCCCCcccCC
Q psy8863 266 YTPQYNEIDLQNKLFLKSELKKINP--KFNQKKILNNLKKDILQLMLFEETTETKLW--NPTYITNYPTEISPLARKSNI 341 (442)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~--~p~~v~~~P~~~~pf~~~~~~ 341 (442)
+. |+++.. .+.+.+++.+.+.|. .... .+++++++..++..++|++++ .|+||+|||..++|||++.+
T Consensus 145 ~~-g~~~~~-~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~a~~~~- 216 (306)
T PRK09350 145 YL-GIDPLS-ADKTQLREVAAKLGLSNIADE-----EEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKIST- 216 (306)
T ss_pred Hh-CCCCCc-CCHHHHHHHHHHcCCCCcCCC-----CCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCccccccC-
Confidence 98 776543 345667777777776 2222 467899999999999999986 49999999999999998766
Q ss_pred CCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHH
Q psy8863 342 ENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIM 421 (442)
Q Consensus 342 ~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m 421 (442)
+|+++++|||||++|+||+|||+|+|||++|+++|+++...+...+.+ ..++|+|||+|+++|+|||||||||+|||+|
T Consensus 217 ~~~~~~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~-~~~~d~~~l~a~~~G~pp~~G~giGidRL~m 295 (306)
T PRK09350 217 EDHRVAERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLP-QQPIDENLIAALEAGLPDCSGVALGVDRLIM 295 (306)
T ss_pred CCCCeeEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCC-cccCcHHHHHHHHcCCCCCCceEecHHHHHH
Confidence 899999999999999999999999999999999999988765433333 3557789999999999999999999999999
Q ss_pred HHcCCCCcccc
Q psy8863 422 LLTNSKNIRDV 432 (442)
Q Consensus 422 ~l~g~~~Irdv 432 (442)
+++|++|||||
T Consensus 296 ~~~g~~~Irdv 306 (306)
T PRK09350 296 LALGAESISEV 306 (306)
T ss_pred HHcCCCCcccC
Confidence 99999999997
No 37
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-66 Score=481.58 Aligned_cols=302 Identities=34% Similarity=0.557 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCC-CCCCCCceeecc----CCCCcceeeecCHHHHHHHHHhccCCce
Q psy8863 111 RKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKP-GGAIAKPFITHH----NSLNMKMFLRIAPELYLKRLIIGGFNKI 185 (442)
Q Consensus 111 ~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~-~g~~~~~f~~~~----~~~~~~~~L~~Spql~lk~ll~~g~~rv 185 (442)
...+..|+.+++.||.||.++||+||+||.|+.++ ...+..+|.|.+ ....++.||++|||+|||+|+++|-++|
T Consensus 13 ~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~i 92 (322)
T COG2269 13 IDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPI 92 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcc
Confidence 34588999999999999999999999999999764 446788888753 2336899999999999999999999999
Q ss_pred EEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHH
Q psy8863 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKK 265 (442)
Q Consensus 186 f~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~ 265 (442)
||||+||||++.+.+|+|||||||||+++.||+.+|+.+.+|++.++. +.+++++||+||+..
T Consensus 93 fql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~-----------------~~~~E~ls~~eaF~r 155 (322)
T COG2269 93 FQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE-----------------CVEAERLSYQEAFLR 155 (322)
T ss_pred hhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHc-----------------cCCcceeeHHHHHHH
Confidence 999999999999999999999999999999999999999999998866 456999999999999
Q ss_pred HCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCC--CcEEEEcCCCCCCCCCcccCCCC
Q psy8863 266 YTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLW--NPTYITNYPTEISPLARKSNIEN 343 (442)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~--~p~~v~~~P~~~~pf~~~~~~~~ 343 (442)
|. |+++.. .+...|++.+++.|+.... +++|.+++..+|.+.|||+++ +|+||+|||..+.++++.++ .|
T Consensus 156 ~~-gid~l~-~~~~~L~~~~~~~~l~~~~-----~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~~-~D 227 (322)
T COG2269 156 YL-GIDPLS-ADKTELREAAAKLGLSAAT-----DEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQIST-GD 227 (322)
T ss_pred Hh-CCCccc-ccHHHHHHHHHhcCCCCCC-----ccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHhhccCC-CC
Confidence 99 898764 4677899999999988665 789999999999999999997 59999999999999999999 99
Q ss_pred CceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHH
Q psy8863 344 NNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLL 423 (442)
Q Consensus 344 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l 423 (442)
+.+++|||||+.|+|++||+.|++|+.+|++||+..+.+|....-+ .+++|+.||.|++. ||||+|++||+|||+|++
T Consensus 228 ~rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~-~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLa 305 (322)
T COG2269 228 PRVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLP-QYPIDEDFLAALAR-MPPCSGVALGFDRLVMLA 305 (322)
T ss_pred cchhhhhhheeeeeeecccchhcCCHHHHHHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHh-CCCcccceecHHHHHHHH
Confidence 9999999999999999999999999999999999999877433334 67899999999999 999999999999999999
Q ss_pred cCCCCccccccCCCCC
Q psy8863 424 TNSKNIRDVILFPHLR 439 (442)
Q Consensus 424 ~g~~~Irdv~~FPr~~ 439 (442)
+|..+|.+|+.||...
T Consensus 306 lg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 306 LGAESIDDVIAFPVAR 321 (322)
T ss_pred cCcchHHHHhhccccc
Confidence 9999999999999864
No 38
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=3.9e-66 Score=502.51 Aligned_cols=274 Identities=28% Similarity=0.525 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCCCCCceeeccCCC-CcceeeecCHHHHHHHHHhccCCceEEEecc
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKPFITHHNSL-NMKMFLRIAPELYLKRLIIGGFNKIFEINKN 191 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~~~~~f~~~~~~~-~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~ 191 (442)
+++||++++++|+||.++||+||+||+|+++ ++|+ .+|.+..... +..+||+||||+|||+++++|++|||+||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~--~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~ 78 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGA--RDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARC 78 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCC--CCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccc
Confidence 4789999999999999999999999999964 4444 4587654332 3445699999999999999999999999999
Q ss_pred cccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCC
Q psy8863 192 FRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYN 271 (442)
Q Consensus 192 FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~ 271 (442)
||+|+++++|++||||+|||++|.|++|+|+++|+++++++..+.+. .++.||+|+||.||++.++ ++
T Consensus 79 fR~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------~~~~p~~rity~eA~~~~~--~~ 146 (280)
T cd00777 79 FRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------ELTTPFPRMTYAEAMERYG--FK 146 (280)
T ss_pred eeCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------CCCCCCceeeHHHHHHHhC--CC
Confidence 99999998666799999999999999999999999999999988763 3467999999999999875 22
Q ss_pred CcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEEc-CCCCCC---CCCcccCCCCCcee
Q psy8863 272 EIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITN-YPTEIS---PLARKSNIENNNIT 347 (442)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~-~P~~~~---pf~~~~~~~~~~~~ 347 (442)
+.. +.++.. .....+ ..+++++++ ||.... |+++..+ ++ +++
T Consensus 147 ~~~--------------~~d~~~----~~~~~~--------------~~~~~~~~~pf~~~~~~~~~~~~~~~-~~-~~~ 192 (280)
T cd00777 147 FLW--------------IVDFPL----FEWDEE--------------EGRLVSAHHPFTAPKEEDLDLLEKDP-ED-ARA 192 (280)
T ss_pred Ccc--------------ccCCcc----cCChhH--------------HHHHHHHhCCCcCCCcccchhhhcCC-cc-Cee
Confidence 110 000000 000000 011223333 333221 2322222 34 799
Q ss_pred eEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCC
Q psy8863 348 ERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSK 427 (442)
Q Consensus 348 ~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~ 427 (442)
+|||||++|+||+|||+|+|||++|+++|+++. ....+ ....++|||+|+++|+|||||||||+|||+|++||++
T Consensus 193 ~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~~----~~~~~-~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~ 267 (280)
T cd00777 193 QAYDLVLNGVELGGGSIRIHDPDIQEKVFEILG----LSEEE-AEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSE 267 (280)
T ss_pred EEEEEEeCCEEEccCEEEcCCHHHHHHHHHHcC----CChhh-hhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCC
Confidence 999999999999999999999999999998763 22211 1224589999999999999999999999999999999
Q ss_pred CccccccCCCCCC
Q psy8863 428 NIRDVILFPHLRN 440 (442)
Q Consensus 428 ~Irdv~~FPr~~~ 440 (442)
|||||++|||+.+
T Consensus 268 ~Irdv~~FPr~~~ 280 (280)
T cd00777 268 SIRDVIAFPKTQN 280 (280)
T ss_pred chheEeecCCCCC
Confidence 9999999999864
No 39
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.82 E-value=6e-20 Score=154.00 Aligned_cols=98 Identities=56% Similarity=0.930 Sum_probs=89.3
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcC-CCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKN-YDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~-L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
++|.+|+++|++||||+ +.+|||++.+..+++.|..+.+ |+.||+|.|+|++.++++|++||.+++++++++|.
T Consensus 10 ~~R~~g~~~Fi~lrd~~-----~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~~~~~~ils~~~ 84 (108)
T cd04322 10 SKRGSGKLSFADLQDES-----GKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVKEFTLLSKSL 84 (108)
T ss_pred EEecCCCeEEEEEEECC-----eEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEeCEeEEeeccC
Confidence 68999999999999999 9999999877655566766555 99999999999999999999999999999999999
Q ss_pred CCCCcccccCCchhhhccccchhh
Q psy8863 81 RPLPNKFQKLSNQEIKYRHRYIDL 104 (442)
Q Consensus 81 ~~lP~~~~~~~~~~~r~~~r~l~~ 104 (442)
+|||++.++..+.++|+++||||+
T Consensus 85 ~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 85 RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred CCCCCCccCcCChhheeecccccC
Confidence 999999888888999999999985
No 40
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.74 E-value=1.9e-17 Score=162.72 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCCceeeccCCCCcceeeec--CHHHHHHHHHhccCCceE
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAKPFITHHNSLNMKMFLRI--APELYLKRLIIGGFNKIF 186 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~~f~~~~~~~~~~~~L~~--Spql~lk~ll~~g~~rvf 186 (442)
+.+...||++|...||.|+.+|.|++. |.++.|+..+..+ |.+...-||+ ||-+..-+.-....-|+|
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTf-yI~~~~lLRThTSp~qir~L~~~~~Pirif 189 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTF-YIDDGLLLRTHTSPVQIRTMEKQKPPIRII 189 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceE-EEcCCceeeccCcHHHHHHHHhcCCCeEEE
Confidence 457888999999999999999999862 6666666665332 3455566774 565443222122235999
Q ss_pred EEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHHH
Q psy8863 187 EINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKII 232 (442)
Q Consensus 187 ~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i~ 232 (442)
++|+|||++..|.+|.|+|+|+|+-.+.. ++.++...++.+++.++
T Consensus 190 ~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 190 APGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999987764 68888888888877764
No 41
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.9e-17 Score=161.94 Aligned_cols=114 Identities=26% Similarity=0.317 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCCceeeccCCCCcc---eeee--cCHHHHHHHHHhcc-C
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAKPFITHHNSLNMK---MFLR--IAPELYLKRLIIGG-F 182 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~~f~~~~~~~~~~---~~L~--~Spql~lk~ll~~g-~ 182 (442)
..++..++++|.+.||.++..|.+.+. |..+.|+..+.++ |++.. .-|| +||-....+.-... .
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTF-y~~~~~~~~lLRTHTs~vq~R~l~~~~~~P 192 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTF-YLKDDREKLLLRTHTSPVQARTLAENAKIP 192 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceE-EEcCCCCceeecccCcHhhHHHHHhCCCCC
Confidence 357889999999999999999988763 7788788776433 44432 3565 35544333221122 6
Q ss_pred CceEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKII 232 (442)
Q Consensus 183 ~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i~ 232 (442)
-|+|.+|+|||+|..|.+|+|||+|+|.-.+.. ++.+|+..++++++.++
T Consensus 193 ~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 193 IKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred ceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999866644 68888888888877763
No 42
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.73 E-value=7.6e-18 Score=160.81 Aligned_cols=113 Identities=26% Similarity=0.301 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCCceeeccCCC-------CcceeeecCHHHHHHHHH---h
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAKPFITHHNSL-------NMKMFLRIAPELYLKRLI---I 179 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~~f~~~~~~~-------~~~~~L~~Spql~lk~ll---~ 179 (442)
.+.+.|+++|...||.|+.+|.+++. |..+.++...-. .|. ....-||++.--..-+.| .
T Consensus 21 ~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dt-fyi~~p~~~~~~~~vLRThts~~~~~~l~~~~ 99 (247)
T PF01409_consen 21 KFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDT-FYISNPYSAEEDYSVLRTHTSPGQLRTLNKHR 99 (247)
T ss_dssp HHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTS-EBSCSSSBCECSSEEE-SSTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccc-eeeeccccccchhhhhhhhhhHHHHHHHHHhc
Confidence 47788999999999999999999752 666655544211 122 566778864322322333 2
Q ss_pred ccCCceEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHHH
Q psy8863 180 GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKII 232 (442)
Q Consensus 180 ~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i~ 232 (442)
...-|+|+||+|||+|..|.+|+|||+|+|.-.+.. ++.+++..++.++++++
T Consensus 100 ~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 100 PPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp HSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 345799999999999999999999999999988865 68888888888877764
No 43
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.72 E-value=3.9e-17 Score=164.75 Aligned_cols=134 Identities=23% Similarity=0.332 Sum_probs=95.5
Q ss_pred chhhhccccchhhhccHHHHHHHHH-----HHHHHHHHHHHhhhCCcEEecCceeecCC----CCCCC-CceeeccCCCC
Q psy8863 92 NQEIKYRHRYIDLIINENTRKVFKK-----RTQIISSIRHFMEKNDFMEVETPILHNKP----GGAIA-KPFITHHNSLN 161 (442)
Q Consensus 92 ~~~~r~~~r~l~~~~~~~~~~~~~~-----rs~i~~~ir~ff~~~gF~EV~TPiL~~~~----~g~~~-~~f~~~~~~~~ 161 (442)
+.|+++++| |++..++++.+ .+.+.+++|++|...||.||.||.|++.. .+... ..+.......+
T Consensus 181 ~~e~~l~~r-----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id 255 (417)
T PRK09537 181 ELESELVSR-----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD 255 (417)
T ss_pred hHHHHHHHh-----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC
Confidence 356677666 58899999999 99999999999999999999999997421 11100 01111111235
Q ss_pred cceeeec--CHHHHHHHHH----hccCCceEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHH
Q psy8863 162 MKMFLRI--APELYLKRLI----IGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKK 230 (442)
Q Consensus 162 ~~~~L~~--Spql~lk~ll----~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~ 230 (442)
...+|+. .|+++..... ....-|+|+||+|||+|..+.+|++||+|++++..+. ++.|++.+++++++.
T Consensus 256 eel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~ 332 (417)
T PRK09537 256 KNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKH 332 (417)
T ss_pred CceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHH
Confidence 5688984 5787754321 1234589999999999998889999999999998875 366666555555443
No 44
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.69 E-value=1.4e-16 Score=139.03 Aligned_cols=97 Identities=25% Similarity=0.396 Sum_probs=83.0
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~ 72 (442)
++|.+||++|++|||++ +.+|||++.+... .+..++.|+.||+|.|+|++.++ ++|++||.+++
T Consensus 25 ~~R~~gk~~Fi~LrD~~-----g~~Q~v~~~~~~~--~~~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~~~~~El~~~~ 97 (135)
T cd04317 25 RRRDHGGLIFIDLRDRY-----GIVQVVFDPEEAP--EFELAEKLRNESVIQVTGKVRARPEGTVNPKLPTGEIEVVASE 97 (135)
T ss_pred hhcccCCEEEEEEecCC-----eeEEEEEeCCchh--HHHHHhCCCCccEEEEEEEEECCCccccCCCCCCCcEEEEEeE
Confidence 68999999999999999 9999999876432 26777899999999999999864 24689999999
Q ss_pred EEEEeccCCCCCccccc--CCchhhhccccchhhhc
Q psy8863 73 LKLITKSLRPLPNKFQK--LSNQEIKYRHRYIDLII 106 (442)
Q Consensus 73 i~vl~~~~~~lP~~~~~--~~~~~~r~~~r~l~~~~ 106 (442)
++++++| .++|+...+ ..+.++|+++||||||.
T Consensus 98 i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~ 132 (135)
T cd04317 98 LEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRR 132 (135)
T ss_pred EEEEECC-CCCCCccccccCCCHHHhhhcceeecCC
Confidence 9999999 799987643 35689999999999973
No 45
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.67 E-value=4.1e-16 Score=159.44 Aligned_cols=111 Identities=21% Similarity=0.254 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhhCCcEEe-cCceeecC---------CCCCCCCceeeccCCCC---------------------------
Q psy8863 119 QIISSIRHFMEKNDFMEV-ETPILHNK---------PGGAIAKPFITHHNSLN--------------------------- 161 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV-~TPiL~~~---------~~g~~~~~f~~~~~~~~--------------------------- 161 (442)
.++..||++|.+.||.|+ +.|.+.+. |..+.||..+.++ |.+
T Consensus 225 ~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTF-yl~~~~~~~~~p~~~~erVk~~He~G~~gS 303 (492)
T PLN02853 225 KVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTF-FLKAPATTRQLPEDYVERVKTVHESGGYGS 303 (492)
T ss_pred HHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceE-EEcCccccccCcHHHHHHHHHHHhcCCCCc
Confidence 477889999999999999 56777763 7777777665322 222
Q ss_pred ------------cceeeec--CHH-HH-HHHHHhc--cCCceEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHH
Q psy8863 162 ------------MKMFLRI--APE-LY-LKRLIIG--GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLM 221 (442)
Q Consensus 162 ------------~~~~L~~--Spq-l~-lk~ll~~--g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~ 221 (442)
...-||+ |+- .. |..+-.. ..-|+|.||+|||+|..|.+|+|||+|+|.-.+.. ++.+++
T Consensus 304 ~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L~ 383 (492)
T PLN02853 304 IGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLI 383 (492)
T ss_pred cccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHHH
Confidence 2234543 321 11 1111111 24599999999999999999999999999987754 688888
Q ss_pred HHHHHHHHH
Q psy8863 222 KFTEKMIKK 230 (442)
Q Consensus 222 ~~~e~li~~ 230 (442)
.+++++++.
T Consensus 384 g~l~~f~~~ 392 (492)
T PLN02853 384 GVLEDFFSR 392 (492)
T ss_pred HHHHHHHHH
Confidence 877776554
No 46
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.65 E-value=1e-15 Score=157.30 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhhCCcEEecCc-eeecC---------CCCCCCCceeeccCCCC---------------------------
Q psy8863 119 QIISSIRHFMEKNDFMEVETP-ILHNK---------PGGAIAKPFITHHNSLN--------------------------- 161 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TP-iL~~~---------~~g~~~~~f~~~~~~~~--------------------------- 161 (442)
.++..+|++|.+.||.|+++| .+.+. |..+.||..+.++ |.+
T Consensus 233 ~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTF-yl~~~~~~~~~~~p~~~~~~Vk~~He~G~~ 311 (494)
T PTZ00326 233 KVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTF-FLSKPETSKVNDLDDDYVERVKKVHEVGGY 311 (494)
T ss_pred HHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceE-EEcCccccccccCcHHHHHHHHHHhccCCc
Confidence 477889999999999999876 56553 7777777665322 222
Q ss_pred --------------cceeeec--CHHHHHHHHHhc-----------cCCceEEEecccccCCCCCCCCCccchhhhhhcc
Q psy8863 162 --------------MKMFLRI--APELYLKRLIIG-----------GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAY 214 (442)
Q Consensus 162 --------------~~~~L~~--Spql~lk~ll~~-----------g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~ 214 (442)
...-||+ |+-.. ++|.. ..-|+|+||+|||+|..|.+|+|||+|+|+....
T Consensus 312 gS~Gw~y~W~~e~a~~~vLRtHtTa~~a--R~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~ 389 (494)
T PTZ00326 312 GSIGWRYDWKLEEARKNILRTHTTAVSA--RMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVID 389 (494)
T ss_pred CCcccccccccchhccccccCCCCHHHH--HHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEEe
Confidence 1234542 33222 11221 2569999999999999999999999999999887
Q ss_pred CC--HHHHHHHHHHHHHH
Q psy8863 215 TN--YIWLMKFTEKMIKK 230 (442)
Q Consensus 215 ~~--~~dl~~~~e~li~~ 230 (442)
.+ ..+++.++.++++.
T Consensus 390 ~~~s~~~L~~~l~~f~~~ 407 (494)
T PTZ00326 390 RNLTLGDLIGTIREFFRR 407 (494)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 64 56666655554433
No 47
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.64 E-value=1.5e-15 Score=126.23 Aligned_cols=92 Identities=23% Similarity=0.359 Sum_probs=79.8
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~~ 79 (442)
++|.+||++|++|||++ +.+|||++++ .+++.|+.+++|+.||+|.|+|++.+++. +++||.+++++++++|
T Consensus 10 ~~R~~gk~~Fi~lrD~~-----g~iQ~v~~~~-~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~i~vl~~a 83 (103)
T cd04319 10 RKREVGKKAFIVLRDST-----GIVQAVFSKD-LNEEAYREAKKVGIESSVIVEGAVKADPRAPGGAEVHGEKLEIIQNV 83 (103)
T ss_pred eEEcCCCeEEEEEecCC-----eeEEEEEeCC-CCHHHHHHHhCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEecC
Confidence 68999999999999999 9999999876 45567888889999999999999987653 6799999999999999
Q ss_pred CCCCCcccccCCchhhhccccch
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYI 102 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l 102 (442)
. ++|.... ...++++++|||
T Consensus 84 ~-~~pi~~~--~~~~~~~~~rhL 103 (103)
T cd04319 84 E-FFPITED--ASDEFLLDVRHL 103 (103)
T ss_pred C-CCccCCC--CCHHHHhhccCC
Confidence 6 7777644 377899999996
No 48
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.63 E-value=1.9e-15 Score=152.14 Aligned_cols=113 Identities=25% Similarity=0.336 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhhCCcEEecCceeecCC----CCC-CCCceeeccCCCCcceeee--cCHHHHHHHHH----hccCCc
Q psy8863 116 KRTQIISSIRHFMEKNDFMEVETPILHNKP----GGA-IAKPFITHHNSLNMKMFLR--IAPELYLKRLI----IGGFNK 184 (442)
Q Consensus 116 ~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~----~g~-~~~~f~~~~~~~~~~~~L~--~Spql~lk~ll----~~g~~r 184 (442)
-.+.+.+.+|++|...||.||.||+|++.. .+. ...........++...+|| ..|+++..... .....|
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqK 320 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIK 320 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEecCceEecccCHHHHHHHHHHhhhhccCCee
Confidence 467899999999999999999999997321 000 0001111111234567899 66888853221 123469
Q ss_pred eEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHH
Q psy8863 185 IFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMI 228 (442)
Q Consensus 185 vf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li 228 (442)
+|+||+|||+|..+.+|+.||+|++++.++. ++.|+..++.+++
T Consensus 321 IFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~L 366 (453)
T TIGR02367 321 IFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFL 366 (453)
T ss_pred EEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998865 4777665444443
No 49
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.58 E-value=6.6e-15 Score=137.01 Aligned_cols=100 Identities=32% Similarity=0.394 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhc----cCCceEEE
Q psy8863 117 RTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG----GFNKIFEI 188 (442)
Q Consensus 117 rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~----g~~rvf~i 188 (442)
|+.+.+.+|++|.++||.||.||.+++. ..+..........+..+...+|++|+...+...++. ..-|+|||
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfei 81 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEI 81 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEE
Confidence 6788999999999999999999999863 111111112222234456789999999998877654 45699999
Q ss_pred ecccccCCCCC--CCCCccchhhhhhccCC
Q psy8863 189 NKNFRNEGISP--RHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 189 ~~~FR~E~~~~--rHl~EFtmlE~e~~~~~ 216 (442)
|+|||.|.... +|+.||+|+++++.+.+
T Consensus 82 g~vfr~e~~~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 82 GPAFRNEGGRRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred cceeecCCCccccccceeEEEcCEEEEcCC
Confidence 99999997654 79999999999999864
No 50
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.56 E-value=8.3e-13 Score=126.99 Aligned_cols=288 Identities=16% Similarity=0.151 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHhhh-----CCcEEecCceeecCCCCCC------CCceeeccCCC-CcceeeecCHHHHHHHHHh-
Q psy8863 113 VFKKRTQIISSIRHFMEK-----NDFMEVETPILHNKPGGAI------AKPFITHHNSL-NMKMFLRIAPELYLKRLII- 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~-----~gF~EV~TPiL~~~~~g~~------~~~f~~~~~~~-~~~~~L~~Spql~lk~ll~- 179 (442)
.++.....|..|+++|.. .+.++|..|.+.....|-+ -++.......+ +..+-..+|-.-|+.+++.
T Consensus 7 ~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~ 86 (348)
T PTZ00213 7 AYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGE 86 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHh
Confidence 344455667777777764 6899999999996544432 12333222222 3555567888888887664
Q ss_pred ccC---CceEEEeccccc-CCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce---eecCCcccccCC
Q psy8863 180 GGF---NKIFEINKNFRN-EGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK---IDYQGRLLDFSK 252 (442)
Q Consensus 180 ~g~---~rvf~i~~~FR~-E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~---~~~~~~~~~~~~ 252 (442)
-+| +.+|+=.++.|. |+.|..|.-==-|-|||++...-+--++.+.+.++.++..+..... ..|......++.
T Consensus 87 y~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~yp~l~~~Lp~ 166 (348)
T PTZ00213 87 HKFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTEEAICNEYPNLKRILPK 166 (348)
T ss_pred cCCCCCceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcCCC
Confidence 233 578997777876 5678999999999999999764444445555555554444432211 112111111222
Q ss_pred CccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCc--------cc-----ccccccHHHHHHHHHHhhhhcCC
Q psy8863 253 SFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQ--------KK-----ILNNLKKDILQLMLFEETTETKL 319 (442)
Q Consensus 253 pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~-----~~~~~~~g~l~~~~~~~~~e~~~ 319 (442)
...=||-+|...+|= + ++..+--.++++++|..+-. ++ .....+|...- + -
T Consensus 167 ~I~FitsqeL~~~YP-~-----lt~keRE~~i~ke~gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~--------~--~ 230 (348)
T PTZ00213 167 EITFLHTEHLLKMYP-N-----LSPKEREREIVKKYGAVFLIGIGCKLSSGDTHDLRAPDYDDWSSPV--------S--A 230 (348)
T ss_pred ceEEecHHHHHHHCC-C-----CCHHHHHHHHHHHhCcEEEEeccCcCCCCCcCCCCCCCcccccccc--------c--c
Confidence 222233444444333 2 33323333455555432211 00 00011111000 0 0
Q ss_pred CCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEE------cCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccC
Q psy8863 320 WNPTYITNYPTEISPLARKSNIENNNITERFELFI------IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSY 393 (442)
Q Consensus 320 ~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~------~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~ 393 (442)
.+ .-||..- |-..+ .......+=|+++ ...||.+|++|+ |++.+.++++.. +..+. ..
T Consensus 231 ~~----~~~~~~~-~~~~~---~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~----g~~dr---~~ 294 (348)
T PTZ00213 231 SK----IGFPTAD-PTMNS---LMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEIT----NNTDR---LK 294 (348)
T ss_pred cc----ccccccc-ccccc---cccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHc----CCCcc---cc
Confidence 00 1133211 11000 0011112335554 237999999998 887665555433 32122 22
Q ss_pred CcHHHHHHHhcC-CCCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 394 YDTDYIHALEYG-MPPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 394 ~d~~yl~~~k~G-~pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
+ .||++ ++.| +|+|+|+|||+|||+|++||.++|.+|+.
T Consensus 295 l-~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 295 C-MWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred C-HHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 3 67888 7778 99999999999999999999999999875
No 51
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.56 E-value=2.4e-14 Score=118.72 Aligned_cols=81 Identities=19% Similarity=0.385 Sum_probs=71.6
Q ss_pred cccccC-CeEEEEEecCCCCCCCccEEEEEeCCc--cCchhhhhhcCCCCCcEEEEEEEEeecCC-------ceeEEEEe
Q psy8863 2 LKRVMG-KISFIMLQDTSGPDSNGKIQLYISNEI--IGKNLYTDFKNYDIGDIIGAKGTLFKTNT-------GELSIKVS 71 (442)
Q Consensus 2 ~~R~~g-~~~Fi~lrD~~~~~~~~~iQvv~~~~~--~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-------~~~el~~~ 71 (442)
++|.+| +++|++|||++ +.+|||++++. .++++++.++.|+.||+|.|+|++.++++ +++||.++
T Consensus 10 ~~R~~g~k~~Fi~LrD~s-----g~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~ 84 (102)
T cd04320 10 TSRAQGAKLAFLVLRQQG-----YTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVELHIE 84 (102)
T ss_pred EeecCCCceEEEEEecCC-----ceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEEEEEE
Confidence 689999 99999999999 99999999764 35667788889999999999999987644 78999999
Q ss_pred EEEEEeccCCCCCccc
Q psy8863 72 SLKLITKSLRPLPNKF 87 (442)
Q Consensus 72 ~i~vl~~~~~~lP~~~ 87 (442)
+++++++|..++|+..
T Consensus 85 ~i~il~~~~~~~P~~~ 100 (102)
T cd04320 85 KIYVVSEAAEPLPFQL 100 (102)
T ss_pred EEEEEecCCCCCCCCC
Confidence 9999999988888764
No 52
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.56 E-value=3.1e-14 Score=119.31 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=72.7
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEecc
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITKS 79 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~~ 79 (442)
++|.+|+++|++|||++ +.+|+|++++..++++++.+++|+.||+|.|+|++.+++. +++||++++++++++|
T Consensus 23 ~~R~~g~~~Fi~LrD~~-----g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~Ei~~~~i~il~~~ 97 (108)
T cd04316 23 EIRDLGGIKFVILRDRE-----GIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPKAPNGVEIIPEEIEVLSEA 97 (108)
T ss_pred eeeccCCeEEEEEecCC-----eeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCCCCCCEEEEEeEEEEEeCC
Confidence 57999999999999999 9999999977666678888899999999999999988765 5799999999999999
Q ss_pred CCCCCccc
Q psy8863 80 LRPLPNKF 87 (442)
Q Consensus 80 ~~~lP~~~ 87 (442)
..++|+..
T Consensus 98 ~~~~P~~~ 105 (108)
T cd04316 98 KTPLPLDP 105 (108)
T ss_pred CCCCCcCc
Confidence 88888764
No 53
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.55 E-value=6.3e-13 Score=126.41 Aligned_cols=264 Identities=17% Similarity=0.216 Sum_probs=152.7
Q ss_pred HHHHHHHHhh-----hCCcEEecCceeecCCCCCC------CCceeeccCCC-CcceeeecCHHHHHHHHHh-ccC---C
Q psy8863 120 IISSIRHFME-----KNDFMEVETPILHNKPGGAI------AKPFITHHNSL-NMKMFLRIAPELYLKRLII-GGF---N 183 (442)
Q Consensus 120 i~~~ir~ff~-----~~gF~EV~TPiL~~~~~g~~------~~~f~~~~~~~-~~~~~L~~Spql~lk~ll~-~g~---~ 183 (442)
.|+.|+++|. +.+.+.|..|.+.....|-+ -+|.......+ +..+-.-+|-.-|+.+++. -+| +
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~ge 82 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGE 82 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCc
Confidence 3555666664 46899999999996543321 13333222222 3555567788888887764 234 6
Q ss_pred ceEEEeccccc-CCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce---eecCCcccccCCCccceeH
Q psy8863 184 KIFEINKNFRN-EGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK---IDYQGRLLDFSKSFEKLTI 259 (442)
Q Consensus 184 rvf~i~~~FR~-E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~---~~~~~~~~~~~~pf~rit~ 259 (442)
.+|+=..+.|. |+.|..|.-==-|-|||.+...-+--++.+.+.++.++..+..... ..|......++....=||-
T Consensus 83 GlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y~~~~~~Lp~~i~Fits 162 (309)
T cd00645 83 GLYTDMNAIRPDEDLDNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKYPQLEPILPEEITFITS 162 (309)
T ss_pred eeccCCccccCCcccCccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhcCCCceEEecH
Confidence 78998888887 6778999999999999999764444444555555554444432211 0121111112222222333
Q ss_pred HHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEE--cCCCCCCCCCc
Q psy8863 260 IEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYIT--NYPTEISPLAR 337 (442)
Q Consensus 260 ~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~--~~P~~~~pf~~ 337 (442)
+|...+|= + ++..+--.++++++ +.|||+ .++... -+
T Consensus 163 qeL~~~YP-~-----l~~keRE~~i~ke~--------------------------------gaVFi~~IG~~L~~---g~ 201 (309)
T cd00645 163 QELEDRYP-D-----LTPKEREDAICKEH--------------------------------GAVFIIGIGGKLSD---GK 201 (309)
T ss_pred HHHHHHCC-C-----CCHHHHHHHHHHHh--------------------------------CcEEEEeccCcCCC---CC
Confidence 34443332 2 21111111122222 235554 233311 11
Q ss_pred ccC---CCCCceeeEEEEEE------cCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcC-CC
Q psy8863 338 KSN---IENNNITERFELFI------IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYG-MP 407 (442)
Q Consensus 338 ~~~---~~~~~~~~~fdl~~------~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G-~p 407 (442)
+++ |+-..+..+=|+++ ...||.+|++|.+. + ++.+|++..+..+. ..+ .|++++..| +|
T Consensus 202 ~Hd~RapDYDDW~LNGDil~w~~~l~~a~ELSSmGiRVde-e----~L~~Ql~~~g~~dr---~~l--~~h~~ll~g~LP 271 (309)
T cd00645 202 KHDGRAPDYDDWTLNGDILVWNPVLQRAFELSSMGIRVDE-E----SLQKQLKLAGDEDR---LEL--PFHKMLLNGELP 271 (309)
T ss_pred cCCCCCCCCcCccccceEEEEchhcCceeeecCcceEecH-H----HHHHHHHHcCCCcc---ccC--HHHHHHHcCCCC
Confidence 111 23334555556665 23799999999765 4 44455444332222 223 459999999 99
Q ss_pred CccceehhHHHHHHHHcCCCCcccccc
Q psy8863 408 PASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
||+|+|||+|||+|++||.++|.+|++
T Consensus 272 ~TiGgGIGqsRL~M~LL~k~HIgEVqa 298 (309)
T cd00645 272 QTIGGGIGQSRLCMFLLQKAHIGEVQA 298 (309)
T ss_pred ccccccccHHHHHHHHhccchhcceee
Confidence 999999999999999999999999986
No 54
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.54 E-value=5.5e-14 Score=141.61 Aligned_cols=95 Identities=18% Similarity=0.401 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhC---CcEEec--CceeecC--------CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCce
Q psy8863 119 QIISSIRHFMEKN---DFMEVE--TPILHNK--------PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKI 185 (442)
Q Consensus 119 ~i~~~ir~ff~~~---gF~EV~--TPiL~~~--------~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rv 185 (442)
.+++.|+++|.+. ||.+++ .|+.+.. |..+.++..+. ..|.+...-||+-.--+--++|..+..|+
T Consensus 72 ~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~D-Tfy~~~~~lLRTHTSa~q~~~l~~~~~~~ 150 (402)
T PLN02788 72 ILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYND-TYYVDAQTVLRCHTSAHQAELLRAGHTHF 150 (402)
T ss_pred HHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccc-eEEecCCccccCCCcHHHHHHHHhCCCcE
Confidence 3667788999997 999999 5655531 77777777653 34667777787543333334455677899
Q ss_pred EEEecccccCCCCCCCCCccchhhhhhcc
Q psy8863 186 FEINKNFRNEGISPRHNPEFTMIEFYAAY 214 (442)
Q Consensus 186 f~i~~~FR~E~~~~rHl~EFtmlE~e~~~ 214 (442)
+.+|+|||+|..|.+|.|+|+|+|.-+.+
T Consensus 151 ~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 151 LVTGDVYRRDSIDATHYPVFHQMEGVRVF 179 (402)
T ss_pred EEEeeEeecCCCCcccCccceeEEEEEEe
Confidence 99999999999999999999999998886
No 55
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.53 E-value=2.1e-12 Score=123.97 Aligned_cols=265 Identities=17% Similarity=0.182 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhh-----hCCcEEecCceeecCCCCCC------CCceeeccCCC-CcceeeecCHHHHHHHHHh-ccC--
Q psy8863 118 TQIISSIRHFME-----KNDFMEVETPILHNKPGGAI------AKPFITHHNSL-NMKMFLRIAPELYLKRLII-GGF-- 182 (442)
Q Consensus 118 s~i~~~ir~ff~-----~~gF~EV~TPiL~~~~~g~~------~~~f~~~~~~~-~~~~~L~~Spql~lk~ll~-~g~-- 182 (442)
...++.|+++|. +.+.+.|..|.+.....|-+ -+|........ +..+-..+|---|+.+++. -+|
T Consensus 12 q~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~ 91 (327)
T PRK05425 12 QQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGFSA 91 (327)
T ss_pred HHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCCCC
Confidence 344555555554 46999999999996544432 12232222222 3455567888888887764 244
Q ss_pred -CceEEEeccccc-CCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce---eecCCcccccCCCccce
Q psy8863 183 -NKIFEINKNFRN-EGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK---IDYQGRLLDFSKSFEKL 257 (442)
Q Consensus 183 -~rvf~i~~~FR~-E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~---~~~~~~~~~~~~pf~ri 257 (442)
+.+|+=..+.|. |+.|..|.-==-|-|||.+...-+--++.+.+.++.++..+..... ..|... ..++....=|
T Consensus 92 geGlytdMnAiR~dE~ld~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~~~-~~Lp~~i~Fi 170 (327)
T PRK05425 92 GEGLYTDMNAIRPDEDLDNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYPLL-PFLPEEITFI 170 (327)
T ss_pred CceeccCCccccCCcccCcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCccc-ccCCCceEEe
Confidence 578998888887 6678999999999999999764444455555555555554432211 112111 1122222223
Q ss_pred eHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEE--cCCCCCCCC
Q psy8863 258 TIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYIT--NYPTEISPL 335 (442)
Q Consensus 258 t~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~--~~P~~~~pf 335 (442)
|-+|...+|= ++ +..+--.++++++ +.|||+ .++...
T Consensus 171 tsqeL~~~YP-~l-----~~keRE~~i~ke~--------------------------------gaVFi~~IG~~L~~--- 209 (327)
T PRK05425 171 TSQELEDRYP-DL-----TPKEREDAIAKEY--------------------------------GAVFLIGIGGKLSD--- 209 (327)
T ss_pred cHHHHHHHCC-CC-----CHHHHHHHHHHHh--------------------------------CcEEEEeccCcCCC---
Confidence 3334433332 22 1111111122222 235554 333311
Q ss_pred CcccC---CCCCceeeEEEEEE-----c-CEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcC-
Q psy8863 336 ARKSN---IENNNITERFELFI-----I-GNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYG- 405 (442)
Q Consensus 336 ~~~~~---~~~~~~~~~fdl~~-----~-G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G- 405 (442)
-++++ |+-..+..+=|+++ + ..||.+|++|++ ++.+.+ |++..+..+. ..+ .||+++ +.|
T Consensus 210 g~~Hd~RapDYDDW~LNGDilvw~~~l~~a~ELSSmGiRVd-~e~L~~----Qlk~~g~~dr---~~l-~~h~~l-l~g~ 279 (327)
T PRK05425 210 GKPHDGRAPDYDDWGLNGDILVWNPVLDDAFELSSMGIRVD-EEALKR----QLKLTGDEDR---LEL-EWHQAL-LNGE 279 (327)
T ss_pred CCcCCCCCCCCcCcccCceEEEEccccCceeeecCcceEec-HHHHHH----HHHHcCCCcc---ccC-HHHHHH-HhCC
Confidence 11111 23334555556665 2 379999999987 665444 4433332122 223 678888 778
Q ss_pred CCCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 406 MPPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 406 ~pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
+|||+|+|||+|||+|++||.++|.+|.+
T Consensus 280 LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 280 LPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred CCCcccccccHHHHHHHHhccchhccccc
Confidence 99999999999999999999999999986
No 56
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.45 E-value=1.7e-11 Score=117.46 Aligned_cols=272 Identities=16% Similarity=0.198 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHhhh-----CCcEEecCceeecCCCCCC------CCceeeccCCC-CcceeeecCHHHHHHHHHh-c
Q psy8863 114 FKKRTQIISSIRHFMEK-----NDFMEVETPILHNKPGGAI------AKPFITHHNSL-NMKMFLRIAPELYLKRLII-G 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~-----~gF~EV~TPiL~~~~~g~~------~~~f~~~~~~~-~~~~~L~~Spql~lk~ll~-~ 180 (442)
++.....|..+++||.. .+.++|..|.+.....|-+ -+|........ +..+-.-+|-.-|+.+++. -
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y 84 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARH 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhc
Confidence 34445566777777754 6899999999996543332 13333222222 4555677888888887764 2
Q ss_pred cC---CceEEEeccccc-CC-CCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce---eecCCcccccCC
Q psy8863 181 GF---NKIFEINKNFRN-EG-ISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK---IDYQGRLLDFSK 252 (442)
Q Consensus 181 g~---~rvf~i~~~FR~-E~-~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~---~~~~~~~~~~~~ 252 (442)
+| +.+|+=..+-|. |+ .|..|.-==-|-|||.+...-+--++.+.+.++.+.+.+..... ..| +....++.
T Consensus 85 ~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te~~~~~~y-~l~~~Lp~ 163 (330)
T TIGR00669 85 DFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATEAAVSERF-GLAPFLPD 163 (330)
T ss_pred CCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhc-CccccCCC
Confidence 44 579998888887 55 58899999999999999764444444444444444444432211 112 11111222
Q ss_pred CccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEE--cCCC
Q psy8863 253 SFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYIT--NYPT 330 (442)
Q Consensus 253 pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~--~~P~ 330 (442)
...=||-+|...+|= + ++..+--.++++++| .|||+ .++.
T Consensus 164 ~I~FitsqeL~~~YP-~-----lt~keRE~~i~ke~g--------------------------------aVFi~~IG~~L 205 (330)
T TIGR00669 164 QIHFVHSEELVSRYP-D-----LDSKGRERAICKELG--------------------------------AVFLIGIGGKL 205 (330)
T ss_pred ceEEecHHHHHHHCC-C-----CCHHHHHHHHHHHhC--------------------------------cEEEEeccCcC
Confidence 222233344444332 2 222222222333333 23332 2222
Q ss_pred ------CCCCC-CcccC-C-CCCceeeEEEEEE------cCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCc
Q psy8863 331 ------EISPL-ARKSN-I-ENNNITERFELFI------IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYD 395 (442)
Q Consensus 331 ------~~~pf-~~~~~-~-~~~~~~~~fdl~~------~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d 395 (442)
..++. |.--. + .+.....+=|+++ ...||.+-+.|.. ++. +.+|++..+..+. ..+
T Consensus 206 ~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIRVd-~~~----L~~Qlk~~g~~dr---~~l- 276 (330)
T TIGR00669 206 SDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAFELSSMGIRVD-EDA----LRHQLALTGDEDR---LEL- 276 (330)
T ss_pred CCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCceeeeecceeEEC-HHH----HHHHHHHcCCCcc---ccC-
Confidence 11111 11000 0 0111113345555 2379999999964 443 3444443332222 223
Q ss_pred HHHHHHHhcC-CCCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 396 TDYIHALEYG-MPPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 396 ~~yl~~~k~G-~pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
.||+++ ..| +|+|+|+|||+|||+|++||..+|.+|+.
T Consensus 277 ~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 277 EWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred HHHHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 678888 778 99999999999999999999999999875
No 57
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.41 E-value=2.8e-12 Score=126.10 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccC---CceE
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGF---NKIF 186 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~---~rvf 186 (442)
.+.+.+|++|...||.|+.||.+++. |.++.++.... .-+......||+|.--.+-+.++... -|+|
T Consensus 76 ~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d-~~~l~d~~vLRtsl~p~ll~~l~~N~~~pirlF 154 (294)
T TIGR00468 76 RVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQD-TFYIKDRLLLRTHTTAVQLRTMEENEKPPIRIF 154 (294)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhcc-ceeecCCcceecccHHHHHHHHHhcCCCCceEE
Confidence 46677899999999999999999864 22222222100 01222345677763333223344443 5999
Q ss_pred EEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 187 EINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 187 ~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
+||+|||++..+.+|+|||+|+++-+... |+.|+...++.++..+
T Consensus 155 EiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l 201 (294)
T TIGR00468 155 SPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM 201 (294)
T ss_pred EecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999999988889999999999987643 6888888777776543
No 58
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.36 E-value=3.7e-12 Score=101.97 Aligned_cols=71 Identities=28% Similarity=0.580 Sum_probs=63.0
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC-----CceeEEEEeEEEEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN-----TGELSIKVSSLKLI 76 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~-----~~~~el~~~~i~vl 76 (442)
++|.+|+++|++|||++ +.+|+|++.+...+ +++.++.|+.||+|.|+|.+.+++ .+++||.+++++++
T Consensus 10 ~~R~~g~~~Fi~Lrd~~-----~~iQ~v~~~~~~~~-~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~~~i~il 83 (85)
T cd04100 10 SRRDHGGLIFIDLRDGS-----GIVQVVVNKEELGE-FFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAEELEVL 83 (85)
T ss_pred hhccCCCEEEEEEEeCC-----eeEEEEEECCcChH-HHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEEeEEEEE
Confidence 68999999999999999 99999998775433 577888999999999999998875 67899999999999
Q ss_pred ec
Q psy8863 77 TK 78 (442)
Q Consensus 77 ~~ 78 (442)
++
T Consensus 84 ~~ 85 (85)
T cd04100 84 SK 85 (85)
T ss_pred CC
Confidence 75
No 59
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.36 E-value=5.8e-12 Score=128.02 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhC--------CcEEecC--ceeec--------CCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhcc
Q psy8863 120 IISSIRHFMEKN--------DFMEVET--PILHN--------KPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG 181 (442)
Q Consensus 120 i~~~ir~ff~~~--------gF~EV~T--PiL~~--------~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g 181 (442)
+.+.|.++|.+. ||.-++. |+.+. .|.++.+|... +..|.+...-||+-..-|--.+|..+
T Consensus 47 ~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~-DT~Yi~~~~lLRTHTSa~q~~~~~~~ 125 (460)
T TIGR00469 47 IRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKS-DCYYINEQHLLRAHTSAHELECFQGG 125 (460)
T ss_pred HHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcc-cceEecCCceeCCCCcHHHHHHHHhc
Confidence 556677888877 8866666 95442 16677666664 33477888888864333333445444
Q ss_pred CC-------ceEEEecccccCCCCCCCCCccchhhhhhccC
Q psy8863 182 FN-------KIFEINKNFRNEGISPRHNPEFTMIEFYAAYT 215 (442)
Q Consensus 182 ~~-------rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~ 215 (442)
.+ ++...|.|||.+..|++|.|.|+|+|.-+.+.
T Consensus 126 ~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 126 LDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRK 166 (460)
T ss_pred cccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEec
Confidence 42 38999999999999999999999999877764
No 60
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.35 E-value=5.4e-12 Score=100.31 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=61.3
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEec
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITK 78 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~ 78 (442)
++|.+|+++|++||||+ +...+|||++++.. .++.+++|+.||+|.|+|.+.++++ +++||.++++++++.
T Consensus 10 ~~R~~g~~~Fi~LrD~s---~~~~lQvv~~~~~~---~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~il~~ 82 (82)
T cd04318 10 SVRDSKKISFIELNDGS---CLKNLQVVVDKELT---NFKEILKLSTGSSIRVEGVLVKSPGAKQPFELQAEKIEVLGE 82 (82)
T ss_pred EEEcCCcEEEEEEECCC---CccCEEEEEeCccc---CHHHHhcCCCceEEEEEEEEEeCCCCCCCEEEEEEEEEEecC
Confidence 68999999999999999 33479999987642 3677789999999999999998876 899999999999863
No 61
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.34 E-value=5.7e-12 Score=101.09 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=60.7
Q ss_pred Ccccc-cCCeEEEEEecCCCCCCCc-cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC------ceeEEEEeE
Q psy8863 1 MLKRV-MGKISFIMLQDTSGPDSNG-KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT------GELSIKVSS 72 (442)
Q Consensus 1 ~~~R~-~g~~~Fi~lrD~~~~~~~~-~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~------~~~el~~~~ 72 (442)
+++|. +|+++|++|||++ + .+|||++++. +.|+.+++|+.||+|.|+|.+.+++. +++||.+++
T Consensus 9 ~~~R~~~~~~~Fi~LrD~~-----g~~iQvv~~~~~---~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~~ 80 (86)
T cd04321 9 DRKPRIVKKLSFADLRDPN-----GDIIQLVSTAKK---DAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVDD 80 (86)
T ss_pred eeEeCCCCceEEEEEECCC-----CCEEEEEECCCH---HHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEEE
Confidence 36888 6899999999999 7 6999997653 46778888999999999999998765 889999999
Q ss_pred EEEEec
Q psy8863 73 LKLITK 78 (442)
Q Consensus 73 i~vl~~ 78 (442)
+++|++
T Consensus 81 i~il~~ 86 (86)
T cd04321 81 IQTLNA 86 (86)
T ss_pred EEEecC
Confidence 999974
No 62
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.33 E-value=2.4e-11 Score=127.71 Aligned_cols=116 Identities=20% Similarity=0.326 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCCceeeccCC--------------------------
Q psy8863 115 KKRTQIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAKPFITHHNS-------------------------- 159 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~~f~~~~~~-------------------------- 159 (442)
..+..+++.+|+.|...||.||+||.+.++ |..+.|+...-.+..
T Consensus 233 ~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~~ 312 (489)
T PRK04172 233 HPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGDT 312 (489)
T ss_pred ChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCCC
Confidence 457789999999999999999999999853 555555443211000
Q ss_pred ------------CCcceeeecCHHHHHHHHHh---ccCCceEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHH
Q psy8863 160 ------------LNMKMFLRIAPELYLKRLII---GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMK 222 (442)
Q Consensus 160 ------------~~~~~~L~~Spql~lk~ll~---~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~ 222 (442)
.++..-||.+.--..-++++ ...-|+|+||+|||+|..+..|++||+|+++.+.+. ++.+++.
T Consensus 313 ~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~elkg 392 (489)
T PRK04172 313 GSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFRDLLG 392 (489)
T ss_pred CCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHHHHHH
Confidence 01223455432222222233 223599999999999999989999999999999986 5666777
Q ss_pred HHHHHHHH
Q psy8863 223 FTEKMIKK 230 (442)
Q Consensus 223 ~~e~li~~ 230 (442)
++++++..
T Consensus 393 ~l~~ll~~ 400 (489)
T PRK04172 393 ILKEFYKR 400 (489)
T ss_pred HHHHHHHH
Confidence 66666544
No 63
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.31 E-value=1.1e-11 Score=98.99 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=60.7
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC-----CceeEEEEeEEEEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN-----TGELSIKVSSLKLI 76 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~-----~~~~el~~~~i~vl 76 (442)
++|.+|+++|++|||++ +.+|++++.+..++ ++.+++|+.||+|.|+|++.+++ .+++||++++++++
T Consensus 10 ~~R~~g~~~Fi~LrD~~-----~~iQ~v~~~~~~~~--~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~~~i~vl 82 (84)
T cd04323 10 RLRSQKKLMFLVLRDGT-----GFLQCVLSKKLVTE--FYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQVDYLEII 82 (84)
T ss_pred EEecCCCcEEEEEEcCC-----eEEEEEEcCCcchh--HHHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEEEEEEEEE
Confidence 68999999999999999 99999998664322 67788999999999999998764 45799999999999
Q ss_pred ec
Q psy8863 77 TK 78 (442)
Q Consensus 77 ~~ 78 (442)
++
T Consensus 83 ~~ 84 (84)
T cd04323 83 GE 84 (84)
T ss_pred cC
Confidence 74
No 64
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.08 E-value=2.8e-08 Score=96.29 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhhhCCcEEecCceeecC----CC-CC--CCCceeeccCCCCcceeeecCHHHHHHHHHhc------c
Q psy8863 115 KKRTQIISSIRHFMEKNDFMEVETPILHNK----PG-GA--IAKPFITHHNSLNMKMFLRIAPELYLKRLIIG------G 181 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~-g~--~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~------g 181 (442)
++|..+.+.+++.|.++||.||.||.+... .. +. ..+.|.. .+..++.+.|+--.....-++++. .
T Consensus 3 ~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 3 ALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRF-KDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEE-ECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 578899999999999999999999999852 11 11 1123332 122356677774322222222221 3
Q ss_pred CCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 182 FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 182 ~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
.-|+|++|+|||.|.....|..||+|+++|+.+.+
T Consensus 82 p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 82 PLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CeEEEEEcCEEecCCCCCCCccceEEeceeeeCCC
Confidence 45999999999999988889999999999988764
No 65
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=99.02 E-value=8.6e-10 Score=111.51 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=45.1
Q ss_pred cCCceEEEecccccCC-CCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 181 GFNKIFEINKNFRNEG-ISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 181 g~~rvf~i~~~FR~E~-~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
..-|+|++|+|||+|. .|.+|+++|+|+|+-++.. ++.|++..++.|++++
T Consensus 206 ~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 206 LPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred CCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4469999999999996 6889999999999988865 6899999999888776
No 66
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=99.00 E-value=1.4e-08 Score=95.79 Aligned_cols=111 Identities=25% Similarity=0.319 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc------C--CCCc--ceeeecC--HHHHHHHHHhc--cCCc
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH------N--SLNM--KMFLRIA--PELYLKRLIIG--GFNK 184 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~------~--~~~~--~~~L~~S--pql~lk~ll~~--g~~r 184 (442)
.+.+.+|++|...||.||.|+.+++.......-.+.... + .... -.+||+| |.+. ..++. ..-|
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~~~~LR~sLlp~LL--~~l~~N~~~~~ 82 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQA--RALAKLKPPIR 82 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCceEEEeccCcHHHH--HHHHhcCCCee
Confidence 456778999999999999999998652111000000000 0 0111 3668876 5655 23344 4579
Q ss_pred eEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 185 IFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 185 vf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
+||||+|||+++.+.+|+|||+|+++.+++. |+.|++..+|.++..+
T Consensus 83 lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 83 IFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred EEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999999877778999999999999987 8999999888887643
No 67
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.76 E-value=8.4e-07 Score=86.85 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecCCCC---CCCCceeeccCCCCcceeeec--CHHHHHHHHHhc------cC
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNKPGG---AIAKPFITHHNSLNMKMFLRI--APELYLKRLIIG------GF 182 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g---~~~~~f~~~~~~~~~~~~L~~--Spql~lk~ll~~------g~ 182 (442)
...+..+.+.+++.|.+.||-||.||.+.....- ...+.|.. .+.-|+..-||- .+++.. +++. ..
T Consensus 19 ~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~-~D~~g~~l~LRpD~T~~iaR--~~a~~~~~~~~p 95 (281)
T PRK12293 19 AKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRF-SDEKNHQISLRADSTLDVVR--IVTKRLGRSTEH 95 (281)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEE-ECCCCCEEEECCcCCHHHHH--HHHHhcccCCCc
Confidence 3678889999999999999999999999853211 11123322 122355566663 233332 2222 13
Q ss_pred CceEEEecccccCCCCCCCCCccchhhhhhccC-CHHHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT-NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 183 ~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~-~~~dl~~~~e~li~~i 231 (442)
-|.|++|+|||.|. .||+|+.+|..+. +..+++.++-+.++.+
T Consensus 96 ~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 96 KKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred eeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 49999999999884 6999999999987 4666666666555544
No 68
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.5e-07 Score=94.76 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCCCc----eeeccCCCCcceeeecCHHHHHHHHHh----
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIAKP----FITHHNSLNMKMFLRIAPELYLKRLII---- 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~~~----f~~~~~~~~~~~~L~~Spql~lk~ll~---- 179 (442)
-...|..+.+.+|+-+.+.||.||.||++..+ -.|...+. .-+-.+.-++..-||--.-.-.-++++
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 34678899999999999999999999999864 12322111 111122335566666322222222222
Q ss_pred --ccCCceEEEecccccCCCCCCCCCccchhhhhhccCC----HHHHHHHHHHHHHH
Q psy8863 180 --GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN----YIWLMKFTEKMIKK 230 (442)
Q Consensus 180 --~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~----~~dl~~~~e~li~~ 230 (442)
.-.-|.|++|||||.|....-+.-||||+++|..+.+ -.+++.++.++++.
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHH
Confidence 2235999999999999999999999999999999873 25566666665554
No 69
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.72 E-value=6.4e-07 Score=89.22 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----C-CCC-CCCceeeccCCCCcceeeec--CHHHHHHHHHh-----c
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----P-GGA-IAKPFITHHNSLNMKMFLRI--APELYLKRLII-----G 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~-~g~-~~~~f~~~~~~~~~~~~L~~--Spql~lk~ll~-----~ 180 (442)
.+++..+.+.+++.|.++||.||+||++... . +|. ..+.|.. .+.-|..+-|+- .+++.. .+.. .
T Consensus 8 ~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~iaR-~~~~~~~~~~ 85 (314)
T TIGR00443 8 AARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKL-FDSLGRVLGLRPDMTTPIAR-AVSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEE-ECCCCCEEeecCcCcHHHHH-HHHHhcccCC
Confidence 4678999999999999999999999999852 1 111 1122322 122356666764 344332 2111 1
Q ss_pred cCCceEEEecccccCCCCCCCCCccchhhhhhccCC--H--HHHHHHHHHHHH
Q psy8863 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN--Y--IWLMKFTEKMIK 229 (442)
Q Consensus 181 g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~--~--~dl~~~~e~li~ 229 (442)
..-|+|++|+|||.|.....+.-||+|+.+|..+.+ . .+++.++.+.++
T Consensus 86 ~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~ 138 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALK 138 (314)
T ss_pred CCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHH
Confidence 235999999999999988889999999999988763 1 244444444443
No 70
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.59 E-value=2.2e-06 Score=87.95 Aligned_cols=116 Identities=8% Similarity=0.058 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----C-CCCC--CCceeeccCC-CCcceeeec--CHHHHHHHHHh---
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----P-GGAI--AKPFITHHNS-LNMKMFLRI--APELYLKRLII--- 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~-~g~~--~~~f~~~~~~-~~~~~~L~~--Spql~lk~ll~--- 179 (442)
-.+.+..+.+.+++.|..+||.||.||++... . .|.. ...|.. .+. -|+..-||- .+++.. +++
T Consensus 20 e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f-~D~~~g~~l~LRpD~T~~iaR--~~a~~~ 96 (392)
T PRK12421 20 EAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKL-IDQLSGRLMGVRADITPQVAR--IDAHLL 96 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEE-EcCCCCcEEEECCcCCHHHHH--HHHhhc
Confidence 34678899999999999999999999999842 1 1211 122221 122 244455663 233332 222
Q ss_pred --ccCCceEEEecccccCCCCCCCCCccchhhhhhccCC-H---HHHHHHHHHHHHHH
Q psy8863 180 --GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN-Y---IWLMKFTEKMIKKI 231 (442)
Q Consensus 180 --~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~-~---~dl~~~~e~li~~i 231 (442)
...-|.|++|+|||.++.......||+|+.+|..+.+ . .|++.++.+.++.+
T Consensus 97 ~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 97 NREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 2246999999999999877667899999999998763 2 36677666665554
No 71
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.52 E-value=7.2e-06 Score=85.07 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CC-CCC--C--CceeeccCCCCcceeeecC--HHHHHHHHHhc-
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PG-GAI--A--KPFITHHNSLNMKMFLRIA--PELYLKRLIIG- 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~-g~~--~--~~f~~~~~~~~~~~~L~~S--pql~lk~ll~~- 180 (442)
-.+++..+.+.+++.|..+||.||.||.|... .. |.+ . +.|.. .+.-|..+-|+-- +++. ++++.
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~-~D~~g~~l~LRpD~T~~ia--R~va~~ 93 (423)
T PRK12420 17 EQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTL-TDQGKRDLALRYDLTIPFA--KVVAMN 93 (423)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEE-ecCCCceecccccccHHHH--HHHHhC
Confidence 34668889999999999999999999999852 11 211 1 12221 1223555666632 2332 22332
Q ss_pred -c---CCceEEEecccccCCCCCCCCCccchhhhhhccCC----HHHHHHHHHHHHHH
Q psy8863 181 -G---FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN----YIWLMKFTEKMIKK 230 (442)
Q Consensus 181 -g---~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~----~~dl~~~~e~li~~ 230 (442)
. .-|.|++|+|||.|.....+.-||+|+.+|..+.+ -.|++.++-+.++.
T Consensus 94 ~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 94 PNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred cCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 1 22899999999999888778999999999998763 25666666555554
No 72
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.46 E-value=3.2e-07 Score=83.28 Aligned_cols=114 Identities=26% Similarity=0.212 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhh-hCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHh----c--
Q psy8863 116 KRTQIISSIRHFME-KNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLII----G-- 180 (442)
Q Consensus 116 ~rs~i~~~ir~ff~-~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~-- 180 (442)
++.+|++.+++.+. +.||.||.||.|.+. ..|. ....|.+. +.-+..++|+-+.+...-.++. .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~-~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVK-DRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEE-ETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeee-ecccccEEeccccccceeeeecceeeecc
Confidence 47889999999999 999999999999964 1221 11233321 1223568898776544433332 1
Q ss_pred --cCCceEEEecccccCCCC---CCCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 181 --GFNKIFEINKNFRNEGIS---PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 181 --g~~rvf~i~~~FR~E~~~---~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
-.-|+|++|+|||+|... -.++-||+|.|++....+ ++..+..++++..+
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~ 134 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELY 134 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHH
Confidence 134999999999999422 489999999999999888 77776666666544
No 73
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.43 E-value=1.5e-06 Score=67.04 Aligned_cols=64 Identities=33% Similarity=0.514 Sum_probs=54.8
Q ss_pred cccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 4 RVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 4 R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
|..++++|+.|+|++ +.+|+++..+ ......+.|+.|+.|.|+|.+...+.++++|.++++++|
T Consensus 12 ~~~~~~~~~~l~D~t-----g~i~~~~~~~----~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~~i~~l 75 (75)
T PF01336_consen 12 RSGGKIVFFTLEDGT-----GSIQVVFFNE----EYERFREKLKEGDIVRVRGKVKRYNGGELELIVPKIEIL 75 (75)
T ss_dssp EEETTEEEEEEEETT-----EEEEEEEETH----HHHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEEEEEEE
T ss_pred cCCCCEEEEEEEECC-----ccEEEEEccH----HhhHHhhcCCCCeEEEEEEEEEEECCccEEEEECEEEEC
Confidence 566799999999999 9999999872 344566889999999999999998877899999999876
No 74
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=98.40 E-value=1.8e-06 Score=85.28 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhcc---
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG--- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g--- 181 (442)
..+++.++.+.+++.+.+.||.||.||.|.+. ..|. ....|.+ .+.+++|+-..+..+-.+++.-
T Consensus 51 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v----~~~~~~L~pt~e~~~~~l~~~~~~s 126 (297)
T cd00770 51 GALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKV----EGEDLYLIATAEVPLAALHRDEILE 126 (297)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEe----cCCCEEEeecCCHHHHHHHhcccCC
Confidence 55788999999999999999999999999963 2222 1123332 1356788766665555544321
Q ss_pred ----CCceEEEecccccCCCC------C-CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 182 ----FNKIFEINKNFRNEGIS------P-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 182 ----~~rvf~i~~~FR~E~~~------~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
.-|+|++|+|||+|... . -+..||+|.|.+ +|..-++..+..++++..
T Consensus 127 ~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~~~~~~~~l~~ 185 (297)
T cd00770 127 EEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISN 185 (297)
T ss_pred HhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHHHHHHHHHHHH
Confidence 35999999999999762 2 578999999997 444335555544444433
No 75
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.38 E-value=1.4e-06 Score=82.85 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeecc----CCC----CcceeeecCHHHHHHHHHh---
Q psy8863 115 KKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHH----NSL----NMKMFLRIAPELYLKRLII--- 179 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~----~~~----~~~~~L~~Spql~lk~ll~--- 179 (442)
+++..|.+.+++.|.+.||.||.||.|.+. .+| +...|.-.. +.- +..++|+-......-++++
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGG-HLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcC-CcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 568889999999999999999999999963 233 112222111 111 4567887553333322222
Q ss_pred ----ccCCceEEEecccccCCCC---CCCCCccchhhhhhccCC
Q psy8863 180 ----GGFNKIFEINKNFRNEGIS---PRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 180 ----~g~~rvf~i~~~FR~E~~~---~rHl~EFtmlE~e~~~~~ 216 (442)
...-|+|++|+|||+|... -.++-||+|.|++....+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 1235999999999999876 357899999999988765
No 76
>KOG2784|consensus
Probab=98.37 E-value=3.4e-07 Score=89.24 Aligned_cols=53 Identities=30% Similarity=0.403 Sum_probs=46.1
Q ss_pred hccC--CceEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 179 IGGF--NKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 179 ~~g~--~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
-.|| .|+|.|-+|||||..|.+||+||+|+|.-.+.. ++.++|.++++++..+
T Consensus 328 k~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 328 KKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred hCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 3455 699999999999999999999999999988865 6899999998886553
No 77
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=98.35 E-value=3.8e-05 Score=71.85 Aligned_cols=279 Identities=17% Similarity=0.212 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHhh-----hCCcEEecCceeecCCCCC-----C-CCceeeccCCCCccee-eecCHHHHHHHHHh-cc
Q psy8863 115 KKRTQIISSIRHFME-----KNDFMEVETPILHNKPGGA-----I-AKPFITHHNSLNMKMF-LRIAPELYLKRLII-GG 181 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~-----~~gF~EV~TPiL~~~~~g~-----~-~~~f~~~~~~~~~~~~-L~~Spql~lk~ll~-~g 181 (442)
..+.+-++.+.++|. ..|.+||..|+|+....|- + -++..+.........| .-.|-.-|+...++ -|
T Consensus 6 I~qQ~~IsfvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~ 85 (330)
T COG2502 6 ILQQQAISFVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYG 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcC
Confidence 334455555555554 3699999999999643221 1 1222222222222222 34566677766553 23
Q ss_pred C---CceEEEecccccCC--CCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce---eecCCcccccCCC
Q psy8863 182 F---NKIFEINKNFRNEG--ISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK---IDYQGRLLDFSKS 253 (442)
Q Consensus 182 ~---~rvf~i~~~FR~E~--~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~---~~~~~~~~~~~~p 253 (442)
| +..|.=-++-|.++ .|..|.-=--|-|||....+-+-.++.+.+.+..+...+..... ..| +...-++..
T Consensus 86 f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te~av~~~~-~~~~~LP~~ 164 (330)
T COG2502 86 FSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETELAVSAEF-GLAPFLPDQ 164 (330)
T ss_pred CcCCCceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCccc
Confidence 3 68999999999954 45799988889999988765554455555555555444432210 011 111122222
Q ss_pred ccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC-
Q psy8863 254 FEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEI- 332 (442)
Q Consensus 254 f~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~- 332 (442)
..=|+-+|...+|- ++++ ..--.+.++++|..+-.+ .|. + .=..+|...
T Consensus 165 ItFihseeL~~ryP-~L~~-----k~RE~ai~Ke~gAvFlig-------IGg----------------~-LsdG~~hd~R 214 (330)
T COG2502 165 ITFIHSQELVARYP-DLDP-----KGRERAIAKELGAVFLIG-------IGG----------------K-LSDGKPHDVR 214 (330)
T ss_pred eEEeehHHHHHhCC-CCCc-----chhhHHHHHhhCcEEEEe-------ccc----------------c-cCCCCcCCCC
Confidence 33344444444433 2322 112222334443221110 000 0 000122221
Q ss_pred CCCCcccC-CCCCc-eeeEEEEEE------cCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhc
Q psy8863 333 SPLARKSN-IENNN-ITERFELFI------IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEY 404 (442)
Q Consensus 333 ~pf~~~~~-~~~~~-~~~~fdl~~------~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~ 404 (442)
+|=|.--+ |...+ ...+=|+++ .+.|+.+-+.|.. .+.|..|+...+..+ .... .|-.++-.
T Consensus 215 aPdYDdWtt~se~~~~gLNGDilvwn~~l~~afElSSMGIRVd-----e~~l~~Ql~ltgdeD---rl~~--~wHq~lln 284 (330)
T COG2502 215 APDYDDWTTPSELGYKGLNGDILVWNPVLGDAFELSSMGIRVD-----EDALKRQLALTGDED---RLEL--EWHQMLLN 284 (330)
T ss_pred CCCccccCCcccccccccCCcEEEechhccchheeecceeEec-----HHHHHHHHhccCchh---hhcC--HHHHHHHc
Confidence 12232111 10001 112235444 2369999999953 233555554322211 2222 34555555
Q ss_pred C-CCCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 405 G-MPPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 405 G-~pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
| +|.+-|-|||=-||+|+++..++|.+|..
T Consensus 285 g~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 285 GELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred CCCCccccCcccHHHHHHHHhcccccceeee
Confidence 5 99999999999999999999999999864
No 78
>KOG2783|consensus
Probab=98.34 E-value=1.3e-06 Score=85.88 Aligned_cols=83 Identities=18% Similarity=0.339 Sum_probs=59.6
Q ss_pred CcEEecCceeecC--------CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCC
Q psy8863 132 DFMEVETPILHNK--------PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNP 203 (442)
Q Consensus 132 gF~EV~TPiL~~~--------~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~ 203 (442)
...+..||+.+.. |..+.++. +...+|.+...-|+.-.-.|---++..|.+..-..|-|||...+|++|.|
T Consensus 94 s~~~~~spvvt~~qnfdsl~~p~dh~sr~-ksdtyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdeidsthyp 172 (436)
T KOG2783|consen 94 SIFENESPVVTTYQNFDSLLFPADHVSRS-KSDTYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEIDSTHYP 172 (436)
T ss_pred hhccCCCceeehhhhcccccCcccccccC-cCCceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccccccccc
Confidence 4577888888842 33222111 12234566666677655555555677889999999999999999999999
Q ss_pred ccchhhhhhccC
Q psy8863 204 EFTMIEFYAAYT 215 (442)
Q Consensus 204 EFtmlE~e~~~~ 215 (442)
=|+|+|.-..+.
T Consensus 173 vfhq~eg~~~~s 184 (436)
T KOG2783|consen 173 VFHQMEGVRLWS 184 (436)
T ss_pred eeccccceeEEe
Confidence 999999988775
No 79
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.30 E-value=2.7e-06 Score=87.51 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCC-----CCceeeccCCCCcceeeecC--HHHHHHHHHhc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAI-----AKPFITHHNSLNMKMFLRIA--PELYLKRLIIG 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~-----~~~f~~~~~~~~~~~~L~~S--pql~lk~ll~~ 180 (442)
-.+++..+.+.+++.|.++||.||.||++... ..|.. ...|.. .+..|+.+-|+.- +++. +.++.
T Consensus 13 ~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~ia--R~~~~ 89 (397)
T TIGR00442 13 EMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTF-KDKGGRSLTLRPEGTAPVA--RAVIE 89 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEE-ECCCCCEEeecCCCcHHHH--HHHHh
Confidence 45778899999999999999999999999752 11111 122321 1234566677743 3443 22222
Q ss_pred ------cCCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 181 ------GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 181 ------g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
..-|+|++|+|||.|..+..|..||+|+++|..+.+
T Consensus 90 ~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 90 NKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred cccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCC
Confidence 135999999999999888778899999999988764
No 80
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.23 E-value=1.5e-06 Score=84.25 Aligned_cols=119 Identities=15% Similarity=0.025 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCC-----CceeeccCC---CCcceeeecCHHHHHHHHHhc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIA-----KPFITHHNS---LNMKMFLRIAPELYLKRLIIG 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~-----~~f~~~~~~---~~~~~~L~~Spql~lk~ll~~ 180 (442)
-.+++..+.+.+++.+.+.||.||.||.|.+. .++... +.|.+.... .+.+++|+-..+-.+-.+++.
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 44788899999999999999999999999853 212122 223221000 123577876644433332221
Q ss_pred -------cCCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 181 -------GFNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 181 -------g~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
-.-|+|++++|||+|..++ -..-||+|.|.+..+.+.++..+..++++...
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 1248999999999999773 47889999999999999988888888776543
No 81
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.22 E-value=7.7e-06 Score=79.42 Aligned_cols=116 Identities=12% Similarity=0.035 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCC-----CceeeccCCCC----cceeeecCHHHHHHHHHhc
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIA-----KPFITHHNSLN----MKMFLRIAPELYLKRLIIG 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~-----~~f~~~~~~~~----~~~~L~~Spql~lk~ll~~ 180 (442)
.+++..|.+.+++-+.+.||.||.||.|.+. ..|... +.|... +.-+ .+++|+-..+..+-.+.+.
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~-~~~~~~~~~~l~LrPt~e~~~~~~~~~ 110 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFK-DAGDEELEEDFALRPTLEENIGEIAAK 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEE-eCCCCccCceEEECCCCCHHHHHHHHh
Confidence 3678899999999999999999999999863 223221 123221 1112 5688876544433322221
Q ss_pred ------c-CCceEEEecccccCCCCCC---CCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 181 ------G-FNKIFEINKNFRNEGISPR---HNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 181 ------g-~~rvf~i~~~FR~E~~~~r---Hl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
. .-|+|++++|||.|..+++ ...||+|.|.+....+.++..+..+.++..
T Consensus 111 ~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~ 170 (264)
T cd00772 111 FIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSA 170 (264)
T ss_pred hhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHH
Confidence 2 2499999999999965533 789999999998778888887777777644
No 82
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.22 E-value=5.3e-06 Score=85.76 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----C-CCCC-----CCceeeccCCCCcceeeecC--HHHHHHHHHhc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----P-GGAI-----AKPFITHHNSLNMKMFLRIA--PELYLKRLIIG 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~-~g~~-----~~~f~~~~~~~~~~~~L~~S--pql~lk~ll~~ 180 (442)
-.+.+..+.+.+++.|.++||.||.||++... . .|.. .+.|.. .+..++.+.|+-- +++.. .++.
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~~ar--~~~~ 93 (412)
T PRK00037 17 ESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTF-QDKGGRSLTLRPEGTAPVVR--AVIE 93 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEE-EcCCCCEEEecCCCcHHHHH--HHHh
Confidence 44678889999999999999999999999742 1 1211 123322 1223566677743 44443 2222
Q ss_pred ---cCCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 181 ---GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 181 ---g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
..-|+|++|+|||+|..+..|..||+|+++|....+
T Consensus 94 ~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 94 HKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred CCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCC
Confidence 356999999999999888888999999999988764
No 83
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.20 E-value=3.7e-06 Score=81.29 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHh----c
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLII----G 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~ 180 (442)
-.+++..|.+.+++.|.+.||.||.||+|.+. ..|. ..+.|... +..+++++|+-..+-.+-.+++ +
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~-d~~~~~l~LrPt~e~~~t~~~~~~i~s 108 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLK-DRHGKEFLLGPTHEEVITDLVANEIKS 108 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEe-cCCCCeEEEecCCcHHHHHHHHhcccc
Confidence 34678899999999999999999999999862 2232 11223321 2224678887653332222222 1
Q ss_pred --c-CCceEEEecccccCCCCCC---CCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 181 --G-FNKIFEINKNFRNEGISPR---HNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 181 --g-~~rvf~i~~~FR~E~~~~r---Hl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
. .-|+|++++|||+|....+ ..-||+|.|.+....+..+..+..++++..
T Consensus 109 ~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 109 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred HhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 2 2399999999999954432 889999999999988766666655555443
No 84
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.12 E-value=5.9e-06 Score=79.79 Aligned_cols=97 Identities=24% Similarity=0.215 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhCC--cEEecCceeecCCCCCCCCceeecc---CCCCcceeeecCHH----HHHHHHHhcc--
Q psy8863 113 VFKKRTQIISSIRHFMEKND--FMEVETPILHNKPGGAIAKPFITHH---NSLNMKMFLRIAPE----LYLKRLIIGG-- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~g--F~EV~TPiL~~~~~g~~~~~f~~~~---~~~~~~~~L~~Spq----l~lk~ll~~g-- 181 (442)
-.+++..|.+.+|+.|...| |.||.||+|.+. ..|.+.. +.-+..++|+-... ...++.+...
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCC
Confidence 34788999999999999985 999999999864 2233210 11234567764221 2223332211
Q ss_pred --CCceEEEecccccCCCCC---CCCCccchhhhhhccC
Q psy8863 182 --FNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYT 215 (442)
Q Consensus 182 --~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~ 215 (442)
.=|+||||+|||+|.+.. -..-||||.|+|.-..
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 249999999999998654 6889999999998764
No 85
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=98.03 E-value=2e-05 Score=84.74 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHh----c
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLII----G 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~ 180 (442)
-.+++..+.+.+++.|.+.||.||.||.|.+. .+|. +.+.|... +..+.+++|+-..+-..-.++. +
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~-d~~~~~l~LrPt~e~~~~~~~~~~~~s 124 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLK-DRHGRDFVLGPTHEEVITDLVRNEIKS 124 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEe-cCCCCEEEECCCChHHHHHHHHhhhhh
Confidence 45789999999999999999999999999953 2221 11233321 2335677887533322221111 1
Q ss_pred --c-CCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHH---HHHHHHh
Q psy8863 181 --G-FNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMI---KKIIMDC 235 (442)
Q Consensus 181 --g-~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li---~~i~~~~ 235 (442)
. .-|+|+|++|||.|.... -+.-||+|.|.|....+-++.....++++ ..+++.+
T Consensus 125 ~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred cccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 1 349999999999995433 27899999999999886655555444444 5555554
No 86
>PLN02972 Histidyl-tRNA synthetase
Probab=97.97 E-value=3.1e-05 Score=84.25 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCC-CceeeccCCCCcceeeecCHHHHHHHHHhcc---C
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIA-KPFITHHNSLNMKMFLRIAPELYLKRLIIGG---F 182 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~-~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g---~ 182 (442)
.-..+|..+...+++.|..+||.||+||++... ..|... ..|.. .+.-|+..-||----...-++++.. .
T Consensus 339 ~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f-~D~gGr~LaLRPDlTvPiAR~vA~n~~~p 417 (763)
T PLN02972 339 EQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDL-ADQGGELCSLRYDLTVPFARYVAMNGITS 417 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEE-ECCCCCEEEeCCCChHHHHHHHHhCCCCc
Confidence 345779999999999999999999999999752 112221 12221 2333556667643322233444322 3
Q ss_pred CceEEEecccccCCCCCCCCCccchhhhhhccC-C----HHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT-N----YIWLMKFTEKMIKK 230 (442)
Q Consensus 183 ~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~-~----~~dl~~~~e~li~~ 230 (442)
-|.|++|+|||.|....-+.-||+|+++|..+. + --|++.++-+.++.
T Consensus 418 ~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 418 FKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred ceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 488999999999987777889999999999885 2 24566666665554
No 87
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.96 E-value=3.4e-05 Score=76.34 Aligned_cols=101 Identities=20% Similarity=0.112 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHh----c
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLII----G 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~ 180 (442)
-.+++..+.+.+++.+.+.||.||.||.|... ..|. ..+.|.+. .-+..++|+-..+...-++.+ +
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~l~LRP~~~~~~~~~~~~~~~s 106 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSKPRS 106 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec--cCCceEEEcccCCHHHHHHHHhhccc
Confidence 34678899999999999999999999999853 2222 11233321 123567786443322222222 1
Q ss_pred --c-CCceEEEecccccCCCCC----CCCCccchhhhhhccC
Q psy8863 181 --G-FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYT 215 (442)
Q Consensus 181 --g-~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~ 215 (442)
. .-|+|++|+|||.|.+.. -...||+|.|++....
T Consensus 107 ~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~ 148 (298)
T cd00771 107 YRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCT 148 (298)
T ss_pred hhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeC
Confidence 1 249999999999998752 4778999999998744
No 88
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.93 E-value=4.3e-05 Score=79.45 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----C-CCCC-----CCceeeccCCCCcceeeecCHHHHHHHHHhc---
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----P-GGAI-----AKPFITHHNSLNMKMFLRIAPELYLKRLIIG--- 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~-~g~~-----~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~--- 180 (442)
...|..+.+.+++.|...||.||.||++... . .|.+ ...|.. .+.-|+.+.||--.-...-++++.
T Consensus 18 ~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~-~d~~g~~l~LRpd~T~~iaR~~~~~~~ 96 (430)
T CHL00201 18 INYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRF-TDRSNRDITLRPEGTAGIVRAFIENKM 96 (430)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEE-EcCCCCEEEeCCCCcHHHHHHHHHccc
Confidence 4568899999999999999999999999853 1 1222 123322 122356677775322222232211
Q ss_pred ----cCCceEEEecccccCCCCCCCCCccchhhhhhccCC--H--HHHHHHHHHHHHH
Q psy8863 181 ----GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN--Y--IWLMKFTEKMIKK 230 (442)
Q Consensus 181 ----g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~--~--~dl~~~~e~li~~ 230 (442)
..-|.|++|+|||.|....-..-||||+++|..+.+ . .+++.++-+.++.
T Consensus 97 ~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~ 154 (430)
T CHL00201 97 DYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNE 154 (430)
T ss_pred cccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHH
Confidence 124999999999999988767889999999998763 1 2455554444433
No 89
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.93 E-value=3.4e-05 Score=76.57 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----C-CCC-CCCceeeccCCCCcceeeecCHHHHHHHHHhc-----c
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----P-GGA-IAKPFITHHNSLNMKMFLRIAPELYLKRLIIG-----G 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~-~g~-~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~-----g 181 (442)
-.+.+..+.+.+++.|.++||.+|+||++... . .+. ..+.+.. .+.-|..+-|+----.-.-++++. .
T Consensus 9 ~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~-~D~~G~~l~LR~D~T~~iaR~~a~~~~~~~ 87 (311)
T PF13393_consen 9 EARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRF-LDRSGRVLALRPDLTVPIARYVARNLNLPR 87 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEE-ECTTSSEEEE-SSSHHHHHHHHHHCCGSSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEE-EecCCcEeccCCCCcHHHHHHHHHhcCcCC
Confidence 45778999999999999999999999999852 2 121 1123322 223455666765433333333433 2
Q ss_pred CCceEEEecccccCCCCCCCCCccchhhhhhccCC-HH---HHHHHHHHHHH
Q psy8863 182 FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN-YI---WLMKFTEKMIK 229 (442)
Q Consensus 182 ~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~-~~---dl~~~~e~li~ 229 (442)
..|+|++|++||.+.....+.-||+|+.+|..+.+ .. +++.++.+++.
T Consensus 88 ~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 88 PKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999888788899999999998864 33 56666666654
No 90
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.93 E-value=3.4e-05 Score=81.99 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC--C--CceeeccCCCCcceeeecCHHHHHHHHHhcc--
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI--A--KPFITHHNSLNMKMFLRIAPELYLKRLIIGG-- 181 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~--~--~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-- 181 (442)
.-.++|..+.+.+|+.+.++||.||.||.|... ..|+. . ..|.. +.-+.+++|+--..-..-++.+..
T Consensus 166 ~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~~~~ 243 (545)
T PRK14799 166 KGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKSKPR 243 (545)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhcccc
Confidence 356789999999999999999999999999753 33331 1 11222 222567778754433333333221
Q ss_pred -----CCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHH
Q psy8863 182 -----FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIM 233 (442)
Q Consensus 182 -----~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~ 233 (442)
.-|+|++|+|||.|.+.. .+.-||||.|+.. |.+.+++.+.+.+++..+..
T Consensus 244 SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 244 TYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred ChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 249999999999999875 6899999999997 77777776777666655443
No 91
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.93 E-value=3.1e-05 Score=79.49 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----C-CCC--CCCceeeccCC-CCcceeeecC--HHHHHHHHHhcc-
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----P-GGA--IAKPFITHHNS-LNMKMFLRIA--PELYLKRLIIGG- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~-~g~--~~~~f~~~~~~-~~~~~~L~~S--pql~lk~ll~~g- 181 (442)
-.+.|..+.+.+++.|.++||.||.||++... . .|. ..+.|.. .+. -|..+-||-- +++. ++++..
T Consensus 16 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f-~d~~~g~~l~LRpD~T~~ia--R~~a~~~ 92 (391)
T PRK12292 16 EARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKL-VDQLSGRTLGLRPDMTAQIA--RIAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEE-eecCCCCEEEECCCCcHHHH--HHHHHhc
Confidence 34678899999999999999999999999742 1 111 1122322 122 3556667643 3333 333322
Q ss_pred -----CCceEEEecccccCCCCCCCCCccchhhhhhccCC-H---HHHHHHHHHHHHHH
Q psy8863 182 -----FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN-Y---IWLMKFTEKMIKKI 231 (442)
Q Consensus 182 -----~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~-~---~dl~~~~e~li~~i 231 (442)
.-|+|++|+|||.|....-+.-||+|+.+|..+.+ . -|++.++-+.++.+
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred cCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 34999999999999988888999999999998764 2 45555555554443
No 92
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.93 E-value=5.7e-05 Score=80.94 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHH----Hhc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRL----IIG 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~l----l~~ 180 (442)
-.+++..+.+.+|+.|.+.||.||.||.|.+. .+|. +.+.|... +..+..++|+-..+-.+-.+ +.+
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~-dr~~~~l~LrPT~Ee~~t~~~~~~i~s 124 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLK-DRKGREFVLGPTHEEVITDLARNEIKS 124 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEe-cCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 45778999999999999999999999999963 2221 12334332 23356777875422222111 111
Q ss_pred --c-CCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHH---HHHHHHh
Q psy8863 181 --G-FNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMI---KKIIMDC 235 (442)
Q Consensus 181 --g-~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li---~~i~~~~ 235 (442)
. .-|+|+|++|||+|.... -+.-||+|.|.|....+.++.....+.++ ..+++.+
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 1 349999999999994332 37899999999999988766666666554 5556554
No 93
>PLN02530 histidine-tRNA ligase
Probab=97.90 E-value=5.1e-05 Score=80.12 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCC--CceeeccCCCCcceeeecCHHHHHHHHHhc-----
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIA--KPFITHHNSLNMKMFLRIAPELYLKRLIIG----- 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~--~~f~~~~~~~~~~~~L~~Spql~lk~ll~~----- 180 (442)
-.++|..+.+.+++.|...||.||.||++... ..|... +.|.. .+.-|+.+-||--.-...-++++.
T Consensus 83 ~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f-~D~~g~~l~LRpD~T~~iaR~~~~~~~~~ 161 (487)
T PLN02530 83 DMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNF-EDKGGRRVALRPELTPSLARLVLQKGKSL 161 (487)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEE-ECCCCCEEecCCCCcHHHHHHHHhccccc
Confidence 34678999999999999999999999999852 112211 12221 223355666664322222233332
Q ss_pred -cCCceEEEecccccCCCCCCCCCccchhhhhhccCC----HHHHHHHHHHHHH
Q psy8863 181 -GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN----YIWLMKFTEKMIK 229 (442)
Q Consensus 181 -g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~----~~dl~~~~e~li~ 229 (442)
-.-|.|++|+|||.|....-+.-||+|+.+|..+.+ -.|++.++.+.++
T Consensus 162 ~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~ 215 (487)
T PLN02530 162 SLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFK 215 (487)
T ss_pred CCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHH
Confidence 124899999999999987767999999999998763 2345555444433
No 94
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.90 E-value=5.3e-05 Score=78.31 Aligned_cols=118 Identities=20% Similarity=0.181 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeeccCC-CCcceeeecCHHHHHHHHHhcc-----
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHHNS-LNMKMFLRIAPELYLKRLIIGG----- 181 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~~-~~~~~~L~~Spql~lk~ll~~g----- 181 (442)
...++..++++.+++.+.+.||.||.||.|.+. .+|. ...|.-.... -+..+||.-..+..+-.+.+.-
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~-~~~f~~~~y~i~~~~~~L~pTsE~~~~~~~~~~i~s~~ 249 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQ-LPKFEEDIFKLEDTDLYLIPTAEVPLTNLHRNEILEEE 249 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCc-cccccccceEecCCCEEEEeCCcHHHHHHHhCcCCChH
Confidence 456889999999999999999999999999963 2222 2222211111 1456788876666655444321
Q ss_pred --CCceEEEecccccCCCC------C-CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 182 --FNKIFEINKNFRNEGIS------P-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 182 --~~rvf~i~~~FR~E~~~------~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
.-|+|++++|||+|.+. . -+..||+|.|. .+|.+-++..+..++++...
T Consensus 250 ~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~ 307 (418)
T TIGR00414 250 ELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDA 307 (418)
T ss_pred hCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHH
Confidence 35999999999999742 1 48899999999 56777777777777766654
No 95
>PLN02908 threonyl-tRNA synthetase
Probab=97.88 E-value=4.1e-05 Score=84.10 Aligned_cols=119 Identities=12% Similarity=0.001 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC----CCceeeccCCCCcceeeecCHHHHHHHHHhc---
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI----AKPFITHHNSLNMKMFLRIAPELYLKRLIIG--- 180 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~----~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~--- 180 (442)
.-.+++..+++.+|+.+.++||.||.||.|.+. ..|+. ...|.. +.-+..++|+--.+...-.+.+.
T Consensus 319 ~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~~ 396 (686)
T PLN02908 319 HGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRVR 396 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhcccc
Confidence 356889999999999999999999999999963 23321 122322 12246778875443333222221
Q ss_pred ----cCCceEEEecccccCCCC----CCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHH
Q psy8863 181 ----GFNKIFEINKNFRNEGIS----PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIM 233 (442)
Q Consensus 181 ----g~~rvf~i~~~FR~E~~~----~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~ 233 (442)
-.-|+|++|+|||+|.+. -.+.-||||.|++. |...+++.+.+++++..+..
T Consensus 397 s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~ 456 (686)
T PLN02908 397 SYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDY 456 (686)
T ss_pred ChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 124999999999999884 26889999999998 66777888887777665533
No 96
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.88 E-value=6.3e-05 Score=81.18 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC----CCceeeccCCCCcceeeec-CHHHHHHHHHhc--
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI----AKPFITHHNSLNMKMFLRI-APELYLKRLIIG-- 180 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~----~~~f~~~~~~~~~~~~L~~-Spql~lk~ll~~-- 180 (442)
.-.+++..+.+.+++.+.+.||.||.||+|... .+|+. .+.|.. .+.-++.+.|+- +...+... .+.
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~-~d~~~~~~~LRP~~~~~~~~~-~~~~~ 281 (575)
T PRK12305 204 KGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPP-MEIDEEEYYLKPMNCPGHILI-YKSRL 281 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccc-cccCCceEEEecCCCHHHHHH-Hhccc
Confidence 355789999999999999999999999999963 22321 122322 122356777873 22222222 221
Q ss_pred ----c-CCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 181 ----G-FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 181 ----g-~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
. .-|.|++|+|||+|.+.. ....||+|.|++. |.+.+...+.+.+++..+
T Consensus 282 ~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~ 340 (575)
T PRK12305 282 RSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFV 340 (575)
T ss_pred CChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHH
Confidence 1 249999999999998752 4678999999995 445555554444444443
No 97
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.87 E-value=4.1e-05 Score=80.45 Aligned_cols=117 Identities=20% Similarity=0.132 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCC-----CceeeccCC---CCcceeeecCHHHHHHHHHh--
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIA-----KPFITHHNS---LNMKMFLRIAPELYLKRLII-- 179 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~-----~~f~~~~~~---~~~~~~L~~Spql~lk~ll~-- 179 (442)
.+++..|.+.+++-+.+.||.||.||.|.+. -.|.+. +.|.+.... .+.+++|+-..+-.+-.+++
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~ 117 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKW 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcc
Confidence 3568999999999999999999999999853 122222 233332111 24678888655443332221
Q ss_pred --cc---CCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 180 --GG---FNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 180 --~g---~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
+. .-|+|++++|||+|..++ -...||+|.|.+..+.+.++..+..+.++..
T Consensus 118 i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~ 176 (472)
T TIGR00408 118 VKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDI 176 (472)
T ss_pred ccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHH
Confidence 11 249999999999999863 4788999999999999988888777777654
No 98
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.86 E-value=3.2e-05 Score=81.37 Aligned_cols=116 Identities=17% Similarity=0.062 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCC----CCCceeeccC---CCCcceeeecCHHHHHHHH---
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGA----IAKPFITHHN---SLNMKMFLRIAPELYLKRL--- 177 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~----~~~~f~~~~~---~~~~~~~L~~Spql~lk~l--- 177 (442)
-.+++..|.+.+++.|.+.||.||.||.|.+. .+|+ ..+.|.+... -.+.+++|+-..+-.+-.+
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 45788999999999999999999999999853 2222 1123333211 1245788875542222211
Q ss_pred -Hhcc---CCceEEEecccccCCCCCC---CCCccchhhhhhccCCHHHHHHHHHHHHH
Q psy8863 178 -IIGG---FNKIFEINKNFRNEGISPR---HNPEFTMIEFYAAYTNYIWLMKFTEKMIK 229 (442)
Q Consensus 178 -l~~g---~~rvf~i~~~FR~E~~~~r---Hl~EFtmlE~e~~~~~~~dl~~~~e~li~ 229 (442)
+.+. .-|+||+++|||.|.. ++ +.-||+|.|.+..+.+.++..+.++.++.
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 2221 2499999999999997 54 88999999999999998888777777664
No 99
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.82 E-value=7.3e-05 Score=81.62 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeecc---CCCCcceeeecCHHHHHHHHHhcc-----
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHH---NSLNMKMFLRIAPELYLKRLIIGG----- 181 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~---~~~~~~~~L~~Spql~lk~ll~~g----- 181 (442)
.+++..+.+.+++.+.+.||.||.||+|.+. -+|. .+.|.-.. +--++.++|+--.+...-++....
T Consensus 274 ~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~-~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~ 352 (639)
T PRK12444 274 QIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGH-WDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYR 352 (639)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCC-hhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChh
Confidence 3567779999999999999999999999963 2232 22222111 112456678765544444333322
Q ss_pred --CCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 182 --FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 182 --~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
.-|+|++|+|||.|.+.. -+.-||+|.|++ +|.+-++..+..++++..
T Consensus 353 ~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~ 406 (639)
T PRK12444 353 ELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQ 406 (639)
T ss_pred hCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHH
Confidence 349999999999998652 477899999999 777766666665555544
No 100
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.80 E-value=7.4e-05 Score=77.40 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHhh-hCCcEEecCceeecC----CCCCCCCceeeccCC-CCcceeeecCHHHHHHHHHhcc----
Q psy8863 112 KVFKKRTQIISSIRHFME-KNDFMEVETPILHNK----PGGAIAKPFITHHNS-LNMKMFLRIAPELYLKRLIIGG---- 181 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~-~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~~-~~~~~~L~~Spql~lk~ll~~g---- 181 (442)
...++..++++.+++.+. +.||.||.||.|... .+|. ...|.-.... -+.++||.-..+..+-.+++..
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~-~~~f~~~ly~i~~~~~~L~pTsE~~l~~l~~~~~~s~ 246 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQ-LPKFEEDLYKIEDDDLYLIPTAEVPLTNLHRDEILDE 246 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCc-cccchhhceEecCCCEEEEeCCcHHHHHHHhcccCCH
Confidence 355788999999999998 999999999999963 2222 1222111100 1467888876666655444322
Q ss_pred ---CCceEEEecccccCCCC----C---CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 182 ---FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 182 ---~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
.-|+|++++|||.|... + -+..||+|.|.+ +|..-++..+..++++...
T Consensus 247 ~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~ 305 (425)
T PRK05431 247 EELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANA 305 (425)
T ss_pred HhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHH
Confidence 35999999999999743 1 388999999999 6666677777777776654
No 101
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.78 E-value=9.7e-05 Score=79.52 Aligned_cols=113 Identities=18% Similarity=0.053 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeec----cCCCCcceeeecCHHHHHHHHHhcc---
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITH----HNSLNMKMFLRIAPELYLKRLIIGG--- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~----~~~~~~~~~L~~Spql~lk~ll~~g--- 181 (442)
-.+++..+.+.+++.+.+.||.||.||++... .+|. .+.|.-. .+.-|+.++|+--.....-++.+..
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~-~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s 277 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGH-WDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRS 277 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCC-cccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCC
Confidence 45689999999999999999999999999853 2232 1222111 1123467888855444333333221
Q ss_pred ----CCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHH
Q psy8863 182 ----FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKM 227 (442)
Q Consensus 182 ----~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~l 227 (442)
.-|+|++|+|||.|.+.. -++-||+|.|+|.... .++.....+++
T Consensus 278 ~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~ 330 (563)
T TIGR00418 278 YRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQ 330 (563)
T ss_pred hHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHH
Confidence 349999999999996541 3788999999998765 34444443333
No 102
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.76 E-value=8.9e-05 Score=77.28 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCH-HHH----HHHHHh
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAP-ELY----LKRLII 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Sp-ql~----lk~ll~ 179 (442)
-.+++..|.+.+|+-+.+.||.||.||.|.+. ..|. ..+.|... +..+.++.|+... +.+ ....-+
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~-d~~~~~~~L~Pt~e~~~~~~~~~~~~s 124 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIK-DRHDREMLYGPTNEEMITDIFRSYVKS 124 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEe-cCCCCEEEEcCCCcHHHHHHHHHHhhh
Confidence 35789999999999999999999999999963 2232 11233321 1235667777422 222 222111
Q ss_pred --ccCCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 180 --GGFNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 180 --~g~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
.-.-|+||++++||+|.... ....||+|-|++....+.+++.+..++++..
T Consensus 125 yrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~ 180 (439)
T PRK12325 125 YKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVA 180 (439)
T ss_pred chhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHH
Confidence 12359999999999996552 3789999999998888877776655555543
No 103
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.70 E-value=0.0002 Score=78.32 Aligned_cols=103 Identities=19% Similarity=0.131 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhc---
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIG--- 180 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~--- 180 (442)
.-.+++..+.+.+++.|...||.||.||++... .+|+ .-+.|.. .+.-++.+.|+--..-..-++.+.
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~-~d~~~~~~~LRP~~~~~~~r~~~~~~~ 346 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT-TESDGEEYALKPMNCPGHVQIYKQGLR 346 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee-ecCCCcEEEEecCCcHHHHHHHhCcCC
Confidence 345789999999999999999999999999853 2232 1122332 122356677774322221122221
Q ss_pred ---c-CCceEEEecccccCCCCC----CCCCccchhhhhhccC
Q psy8863 181 ---G-FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYT 215 (442)
Q Consensus 181 ---g-~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~ 215 (442)
. .-|+|++|+|||.|.+.. ...-||||+|++....
T Consensus 347 s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~ 389 (638)
T PRK00413 347 SYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCT 389 (638)
T ss_pred ChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcC
Confidence 1 349999999999998753 4678999999997543
No 104
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.55 E-value=0.00037 Score=75.32 Aligned_cols=120 Identities=19% Similarity=0.157 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC---C-CCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhc---
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK---P-GGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIG--- 180 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~---~-~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~--- 180 (442)
.-.+++..+.+.+++.+.+.||.+|.||.+... . .|+ ..+.|.+.. -+.+++|+-..+...=.+...
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~ 302 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTI 302 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcC
Confidence 456899999999999999999999999999531 1 111 123444322 246788875544332222211
Q ss_pred ----cCCceEEEec-ccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHH
Q psy8863 181 ----GFNKIFEINK-NFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIM 233 (442)
Q Consensus 181 ----g~~rvf~i~~-~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~ 233 (442)
-.-|+|++|+ |||+|.+.. .++-||||.|.+....+.++.++..++++..+..
T Consensus 303 SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILE 364 (613)
T ss_pred chhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 1348999999 999998652 5889999999998877788888888888776544
No 105
>PLN02837 threonine-tRNA ligase
Probab=97.54 E-value=0.00031 Score=76.18 Aligned_cols=118 Identities=13% Similarity=-0.002 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC----CCceeeccCCCCcceeeecCHHHHHHHHHhc---
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI----AKPFITHHNSLNMKMFLRIAPELYLKRLIIG--- 180 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~----~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~--- 180 (442)
.-.+++.++++.+++...++||.||.||.|... ..|+- ...|.+. +--+..+.|+.+.+-..-.+...
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~-~~~~~~y~l~p~~~p~~~~~~~~~~~ 323 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQM-DIEDELYQLRPMNCPYHILVYKRKLH 323 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhccccc-CCCCceEEECCCCcHHHHHHHhCccC
Confidence 356889999999999999999999999999963 23321 1222210 11133445666543332111211
Q ss_pred ----cCCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 181 ----GFNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 181 ----g~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
-.-|++++|+|||+|.+++ -+..||+|.|.+. |.+.++..+..++++..+
T Consensus 324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~ 381 (614)
T PLN02837 324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLT 381 (614)
T ss_pred ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHH
Confidence 2358999999999998642 4788999999995 888888888777777654
No 106
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.42 E-value=0.00072 Score=68.92 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecCC-----CCCCC--CceeeccCCCCcceeeec--CHHHHHHHHHh---ccCCce
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNKP-----GGAIA--KPFITHHNSLNMKMFLRI--APELYLKRLII---GGFNKI 185 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~~-----~g~~~--~~f~~~~~~~~~~~~L~~--Spql~lk~ll~---~g~~rv 185 (442)
..+.+.+++.|.++||.||.||++.... .|... ..|.. .+.-|+.+-||- .+++..- .+. ....|+
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f-~D~~G~~l~LRpD~T~piaR~-~~~~~~~~p~R~ 85 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVT-SDENGEELCLRPDFTIPVCRR-HIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEE-ECCCCCEEeeCCCCcHHHHHH-HHHcCCCCCeEE
Confidence 3688889999999999999999998531 12211 12322 122355566663 2333321 111 234599
Q ss_pred EEEecccccCCCCCCCCCccchhhhhhccC-C----HHHHHHHHHHHHHHH
Q psy8863 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYT-N----YIWLMKFTEKMIKKI 231 (442)
Q Consensus 186 f~i~~~FR~E~~~~rHl~EFtmlE~e~~~~-~----~~dl~~~~e~li~~i 231 (442)
|++|+|||.| .-+.-||||+.+|..+. + -.|++.++-+.++.+
T Consensus 86 ~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 9999999999 33568999999999884 3 236777776666543
No 107
>PLN02678 seryl-tRNA synthetase
Probab=97.20 E-value=0.00049 Score=71.39 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeeccCCC---Ccceeee-cC--H--HHHHHHHH-
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHHNSL---NMKMFLR-IA--P--ELYLKRLI- 178 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~~~---~~~~~L~-~S--p--ql~lk~ll- 178 (442)
...+++.++++.+++++.++||.||.||.|... .+|. ...|....+.. +.+.||. +| | -+|....+
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~-~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s 250 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQ-LAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWID 250 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCC-cccchhcCceecCCCCceeeecccccccChHHhcccCC
Confidence 346889999999999999999999999999853 2332 23332221111 2345543 32 1 12221111
Q ss_pred -hccCCceEEEecccccCCC----CC---CCCCccchhhhhhccCCHHH--HHHHHHHHHHH
Q psy8863 179 -IGGFNKIFEINKNFRNEGI----SP---RHNPEFTMIEFYAAYTNYIW--LMKFTEKMIKK 230 (442)
Q Consensus 179 -~~g~~rvf~i~~~FR~E~~----~~---rHl~EFtmlE~e~~~~~~~d--l~~~~e~li~~ 230 (442)
..-.-|++++++|||+|.+ ++ .+.-+|+++|.. .+..-++ ..+..|+|+..
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~ 311 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKN 311 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHH
Confidence 1124599999999999986 22 477899999994 4433344 55555555554
No 108
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0049 Score=63.14 Aligned_cols=117 Identities=21% Similarity=0.127 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC---CCCCCCCceeeccCC-CCcceeeecCHHHHHHHHHh------c-c
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK---PGGAIAKPFITHHNS-LNMKMFLRIAPELYLKRLII------G-G 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~---~~g~~~~~f~~~~~~-~~~~~~L~~Spql~lk~ll~------~-g 181 (442)
+.++--++++++=++..++||.|+.+|.|... .+......|.-..+. -+..+||.-..+.-+-.+.+ . .
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~L 252 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEEDL 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhcccccccccC
Confidence 34555677788888888999999999999952 222222233221111 12357887665555544332 1 2
Q ss_pred CCceEEEecccccCCCC----C---CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 182 FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 182 ~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
.-++.-.+||||.|... + .+..+|+.+|.-. ++.-++-....|+|+..
T Consensus 253 P~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ 307 (429)
T COG0172 253 PIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGN 307 (429)
T ss_pred CeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHH
Confidence 35888899999999644 3 4778999988643 33444444444555443
No 109
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=97.14 E-value=0.0013 Score=68.74 Aligned_cols=48 Identities=23% Similarity=0.138 Sum_probs=36.9
Q ss_pred CceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 183 ~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
=|+.|+|+|||+|.+.. -+..||||.|.+ .|.+.+++.+.+..++..+
T Consensus 187 lr~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~ 237 (456)
T PRK04173 187 FGIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELR 237 (456)
T ss_pred eeeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHH
Confidence 49999999999998762 255899999997 7877766666666655544
No 110
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.02 E-value=0.0046 Score=60.23 Aligned_cols=104 Identities=9% Similarity=-0.017 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCC--CceeeccCCCCcceeeec--CHHHHHHHHHh---c
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIA--KPFITHHNSLNMKMFLRI--APELYLKRLII---G 180 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~--~~f~~~~~~~~~~~~L~~--Spql~lk~ll~---~ 180 (442)
.-+..+..+.+.+++.|.++||-||+||++... -.+... ..+..-.+.-|+..-||- .|++.. +++ .
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR--~~a~~~~ 82 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLR--YYSMYPT 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHH--HHHhcCC
Confidence 344567788889999999999999999999742 112111 111111122356666774 345554 333 2
Q ss_pred cCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHH
Q psy8863 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFT 224 (442)
Q Consensus 181 g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~ 224 (442)
+..|.|++|+|||.+. +|+|+.+|..+.+.+...+.+
T Consensus 83 ~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred CCceEEEeccEeccCC-------CcceeceEEECCCchhHHHHH
Confidence 4569999999999874 489999999985544333333
No 111
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0051 Score=64.48 Aligned_cols=117 Identities=22% Similarity=0.195 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHh-----
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLII----- 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----- 179 (442)
-++++..+.+.+|+.|++.|..||.=|.|.++ +.|. +.+.|.+. +..+.++.|+-..|--.--++.
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~-drg~~~l~L~PTsEe~it~~~~~~i~S 124 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVK-DRGDRPLALRPTSEEVITDMFRKWIRS 124 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEE-ccCCceeeeCCCcHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999985 2222 12334332 2346777777544433332222
Q ss_pred --ccCCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 180 --GGFNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 180 --~g~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
.-.-++|||...||+|.-.+ -+.-||+|=|.|-...|.+++....++++..
T Consensus 125 YkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~ 180 (500)
T COG0442 125 YKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDA 180 (500)
T ss_pred hhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 11359999999999997643 5889999999999999999999888887753
No 112
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.65 E-value=0.0086 Score=62.55 Aligned_cols=118 Identities=13% Similarity=-0.009 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHh-hhCCcEEecCceeecC---CCCCCCCcee-----ec-cC----C-------------------
Q psy8863 113 VFKKRTQIISSIRHFM-EKNDFMEVETPILHNK---PGGAIAKPFI-----TH-HN----S------------------- 159 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff-~~~gF~EV~TPiL~~~---~~g~~~~~f~-----~~-~~----~------------------- 159 (442)
..++..++.+.+.+.+ .+.||.||.+|.|.+. .+..+...|. +. .. .
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 4467778888887655 5569999999999963 1111222231 21 00 0
Q ss_pred ----CCcceeeecCHHHHHHHHHhc------c-CCceEEEe-cccccCCCCC---CCCCccchhhhhhccCCHHHHHHHH
Q psy8863 160 ----LNMKMFLRIAPELYLKRLIIG------G-FNKIFEIN-KNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFT 224 (442)
Q Consensus 160 ----~~~~~~L~~Spql~lk~ll~~------g-~~rvf~i~-~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~ 224 (442)
-+.+++|+-..+..+=.+++. . .-|++++. +|||.|..++ .++-||+|.|.-. +.+.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 112566887776665443331 2 24789955 7999998643 6889999999988 77888988888
Q ss_pred HHHHHHH
Q psy8863 225 EKMIKKI 231 (442)
Q Consensus 225 e~li~~i 231 (442)
++++...
T Consensus 381 e~mle~~ 387 (520)
T TIGR00415 381 DKTLELA 387 (520)
T ss_pred HHHHHHH
Confidence 8887653
No 113
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0013 Score=65.12 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=36.7
Q ss_pred CceEEEecccccCC-CCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEG-ISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 183 ~rvf~i~~~FR~E~-~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
-|.|.|-+|||.|. -|..||.-++.--+-.+.. +.++-..++|.|+++.
T Consensus 208 lklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf 259 (536)
T COG2024 208 LKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 (536)
T ss_pred ceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHh
Confidence 58999999999996 4678998888766655544 4667777777776653
No 114
>PLN02320 seryl-tRNA synthetase
Probab=96.49 E-value=0.0082 Score=62.96 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceee-c-cCCCCcceeeecCHH-----HHHHHHHh--c
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFIT-H-HNSLNMKMFLRIAPE-----LYLKRLII--G 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~-~-~~~~~~~~~L~~Spq-----l~lk~ll~--~ 180 (442)
.++..++++.++++..++||.||.||.|... .+|.. ..|.- . +..-+..+||.-..| +|+...+. .
T Consensus 233 a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~-p~~e~~~~y~ie~ed~~Li~TaE~Pl~~~~~~~ils~~d 311 (502)
T PLN02320 233 VLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQ-PRGDNTQVYSIDGSDQCLIGTAEIPVGGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCC-cccccCceeEECCCceEEeecccccccccccccccCHhh
Confidence 3466789999999999999999999999853 23321 11110 0 001145677742222 33333221 1
Q ss_pred cCCceEEEecccccCCC----CC---CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 181 GFNKIFEINKNFRNEGI----SP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 181 g~~rvf~i~~~FR~E~~----~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
-.-|+..+|+|||.|.+ ++ -+.-+|+++|... |+.-++..+..++++..+
T Consensus 312 LPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~ 368 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIE 368 (502)
T ss_pred CCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHH
Confidence 23699999999999976 22 3778999999864 456677777777777664
No 115
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=96.26 E-value=0.0083 Score=63.27 Aligned_cols=116 Identities=15% Similarity=0.039 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHH-hhhCCcEEecCceeecC----CCCCCCCc-----eeecc-----CCC-----------------
Q psy8863 113 VFKKRTQIISSIRHF-MEKNDFMEVETPILHNK----PGGAIAKP-----FITHH-----NSL----------------- 160 (442)
Q Consensus 113 ~~~~rs~i~~~ir~f-f~~~gF~EV~TPiL~~~----~~g~~~~~-----f~~~~-----~~~----------------- 160 (442)
-.+++.++.+.+++. ..+.||.||.||.|.+. -.| +... |.+.. +.+
T Consensus 222 Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksG-hl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMR-YLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred HHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcC-CccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 457788889999887 45669999999999863 122 1122 22210 000
Q ss_pred ------CcceeeecCHHHHHHHHHh----cc---CCceEE-EecccccCCCC--C-CCCCccchhhhhhccCCHHHHHHH
Q psy8863 161 ------NMKMFLRIAPELYLKRLII----GG---FNKIFE-INKNFRNEGIS--P-RHNPEFTMIEFYAAYTNYIWLMKF 223 (442)
Q Consensus 161 ------~~~~~L~~Spql~lk~ll~----~g---~~rvf~-i~~~FR~E~~~--~-rHl~EFtmlE~e~~~~~~~dl~~~ 223 (442)
+..+.|+-+..-+.=.+.+ +. .-|+|+ .|+|||.|... . .+.-||+|.|+- .+.+.+++.+.
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee 379 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEI 379 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHH
Confidence 0111233222211111122 11 128999 56999999633 2 688999999998 77889999999
Q ss_pred HHHHHHH
Q psy8863 224 TEKMIKK 230 (442)
Q Consensus 224 ~e~li~~ 230 (442)
.++++.+
T Consensus 380 ~e~ll~~ 386 (517)
T PRK00960 380 RDELLKY 386 (517)
T ss_pred HHHHHHH
Confidence 9988844
No 116
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.05 E-value=0.046 Score=42.20 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=49.3
Q ss_pred cCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 6 ~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
.|.=.|+.|.|+. ..|.|++-+... ......+..||-|.|+|.+.- ++|.+.+.+++++++
T Consensus 13 ~~GHvyfsLkD~~-----a~i~cv~f~~~~----~~~~~~l~~Gd~V~v~G~v~~-~~G~~ql~v~~i~~~ 73 (73)
T cd04487 13 TSGPTIFTLRDET-----GTVWAAAFEEAG----VRAYPEVEVGDIVRVTGEVEP-RDGQLQIEVESLEVL 73 (73)
T ss_pred CCCCEEEEEEcCC-----EEEEEEEEchhc----cCCcCCCCCCCEEEEEEEEec-CCeEEEEEEeeEEEC
Confidence 4455899999999 899999986532 122246899999999999986 888999999999875
No 117
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=95.87 E-value=0.085 Score=40.72 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=46.0
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecC-CceeEEEEeEEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTN-TGELSIKVSSLK 74 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~-~~~~el~~~~i~ 74 (442)
+.+|+.|.|.+ +.+.+++-++. ++.. ..|..|+.|.|.|.+.... ++++.+.++++.
T Consensus 17 g~~~~~L~D~~-----~~i~~~~f~~~-----~~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i~ 75 (78)
T cd04489 17 GHLYFTLKDED-----ASIRCVMWRSN-----ARRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEIE 75 (78)
T ss_pred cEEEEEEEeCC-----eEEEEEEEcch-----hhhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Confidence 48999999999 99999998763 2223 5689999999999998654 567888888764
No 118
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.86 E-value=0.035 Score=59.66 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecCCC-----C-CCC-CceeeccCCCCcceeeecC--HHHHHHHHHh-ccC--Cce
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNKPG-----G-AIA-KPFITHHNSLNMKMFLRIA--PELYLKRLII-GGF--NKI 185 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~~~-----g-~~~-~~f~~~~~~~~~~~~L~~S--pql~lk~ll~-~g~--~rv 185 (442)
..+.+.+|++|...||.|+-|..+++... + ... .........-..-.+||+| |.+..-..-- .+. -|+
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~l 441 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKI 441 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeE
Confidence 44567789999999999999999986411 0 110 1122222222334668887 4444322110 111 389
Q ss_pred EEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHH
Q psy8863 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKK 230 (442)
Q Consensus 186 f~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~ 230 (442)
||||+||+.+..+..|..|++++-+-+++. |+.++...+|.++..
T Consensus 442 FEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 442 FEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred EEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999999998765556888999998887764 788898888888754
No 119
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=95.80 E-value=0.26 Score=46.42 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhc----cCCceEEEeccccc
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG----GFNKIFEINKNFRN 194 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~----g~~rvf~i~~~FR~ 194 (442)
++.+.+-+||.++|...|.+.-|.+ .+ +..++++.|.....|..+.+ ...|+-...+|.|.
T Consensus 3 eiR~~fl~FF~~kgH~~v~s~slvp--~d-------------DptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~ 67 (232)
T cd00673 3 EIRETFLSFFEKKGHTRVPSSPVVP--RD-------------DPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRA 67 (232)
T ss_pred HHHHHHHHHHHhCCCEEeCCCCcCC--CC-------------CCchheeccchhhhhHHhcCCCCCCCCceeeeeeceec
Confidence 4566778899999999998655552 11 12223334443333333321 23699999999998
Q ss_pred CCC-----CCCCCCccchhhhhhccCCH--HHHHHHHHHHHHH
Q psy8863 195 EGI-----SPRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIKK 230 (442)
Q Consensus 195 E~~-----~~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~~ 230 (442)
-+. ++||+.=|.|| .-.+|.|| ++.+..+-+++-.
T Consensus 68 ~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT~ 109 (232)
T cd00673 68 GDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLTE 109 (232)
T ss_pred CChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHHh
Confidence 543 35999999999 66777775 6677777776544
No 120
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=0.17 Score=56.30 Aligned_cols=92 Identities=21% Similarity=0.310 Sum_probs=57.6
Q ss_pred HHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhcc----CCceEEEecccccCCC
Q psy8863 122 SSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG----FNKIFEINKNFRNEGI 197 (442)
Q Consensus 122 ~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g----~~rvf~i~~~FR~E~~ 197 (442)
+.+=+||.++|-..|.+--|.+. -+.+++++.|+..-.|-.+.++ ..|+-...||-|+.+.
T Consensus 13 ~~FL~FF~~kgH~~v~s~slVP~---------------nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~NDi 77 (879)
T COG0013 13 QKFLDFFEKKGHTVVPSSPLVPR---------------NDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTNDI 77 (879)
T ss_pred HHHHHHHHHCCCeecCCCCcCCC---------------CCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccCch
Confidence 34457999999877764444321 1223344444433334333333 2588889999999664
Q ss_pred C-----CCCCCccchhhhhhccCCH--HHHHHHHHHHHH
Q psy8863 198 S-----PRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIK 229 (442)
Q Consensus 198 ~-----~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~ 229 (442)
+ +||+.=|.|| .-.+|.|| ++-+..+-+|+-
T Consensus 78 eNVG~T~RHhTfFEML-GNfSFGdYFKeeAI~~AwEflT 115 (879)
T COG0013 78 DNVGYTARHHTFFEML-GNFSFGDYFKEEAIEFAWEFLT 115 (879)
T ss_pred hhcCccccchhHHHhh-hcCchhHHHHHHHHHHHHHHHH
Confidence 3 4999999998 55666675 666777766664
No 121
>KOG1936|consensus
Probab=95.31 E-value=0.06 Score=54.58 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhc-cC--Cc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG-GF--NK 184 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~-g~--~r 184 (442)
-+.+|..+++.+.+-|..+|..+|+||.+.-- --|..++..-.--+..|.-.-||----...-++++. .. -+
T Consensus 73 qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~sik 152 (518)
T KOG1936|consen 73 QMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSIK 152 (518)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccce
Confidence 34789999999999999999999999998731 112222211111123333344443222222233332 22 35
Q ss_pred eEEEecccccCCCC--CCCCCccchhhhhhcc
Q psy8863 185 IFEINKNFRNEGIS--PRHNPEFTMIEFYAAY 214 (442)
Q Consensus 185 vf~i~~~FR~E~~~--~rHl~EFtmlE~e~~~ 214 (442)
-|+||++||.+... .-+.-||.|+|+-.++
T Consensus 153 Ry~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 153 RYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred eeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 69999999998754 4688999999999887
No 122
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=95.26 E-value=0.18 Score=39.03 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=47.6
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
..+++.|.|++ +.+.+++-.+.. .....+..|..|.|.|.+.. ..+..++.+.++..+...
T Consensus 19 ~~~~~~l~D~t-----g~i~~~~f~~~~-----~~~~~l~~g~~v~v~G~v~~-~~~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 19 PYLALTLQDKT-----GEIEAKLWDASE-----EDEEKFKPGDIVHVKGRVEE-YRGRLQLKIQRIRLVTEE 79 (83)
T ss_pred cEEEEEEEcCC-----CeEEEEEcCCCh-----hhHhhCCCCCEEEEEEEEEE-eCCceeEEEEEEEECCcc
Confidence 57899999999 999999986532 22357899999999999976 355688888888766543
No 123
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.034 Score=59.55 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeeccCCCCcceeeecCH--HHHHHH--------HHhc
Q psy8863 115 KKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHHNSLNMKMFLRIAP--ELYLKR--------LIIG 180 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~~~~~~~~L~~Sp--ql~lk~--------ll~~ 180 (442)
.+|+.+.+++|.-..+.||.||.||.|... ..|+- +.+...+|+..|. ++.++- +...
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~--------~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~ 292 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHW--------DNYKEDMFLTESDDREYALKPMNCPGHILIFKS 292 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccch--------hhccccceeeccCChhheeeeccCHhHHHHHhc
Confidence 679999999999999999999999999853 23321 1223334444432 122211 1111
Q ss_pred c-------CCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHH
Q psy8863 181 G-------FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMD 234 (442)
Q Consensus 181 g-------~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~ 234 (442)
. .-|++++|.|+|.|.++. +.+-+|||=|.-. |+..+.+.+.+.+.+..+..-
T Consensus 293 ~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v 356 (589)
T COG0441 293 GLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEV 356 (589)
T ss_pred CCcceeccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHH
Confidence 1 248999999999999873 5789999988754 445777777777776665443
No 124
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=94.84 E-value=0.16 Score=57.51 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhcc-----CCceEEEecccc
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG-----FNKIFEINKNFR 193 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-----~~rvf~i~~~FR 193 (442)
.+-+.+-+||.++|..-|.+--+.+ -. ..+++|+.|+..-.|-.+.+| ..|+-...||.|
T Consensus 60 eiR~~fl~FF~~~gH~~v~s~pvvp--rw-------------~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR 124 (902)
T TIGR03683 60 EMREAFLSFFEKHGHTRIKRYPVVA--RW-------------RDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIR 124 (902)
T ss_pred HHHHHHHHHHHhCCCEEeCCcCcCc--CC-------------CCCeeEeecchhhhhHhhcCCCCCCCCCCceecccccc
Confidence 3445566899999988776322221 00 112666776666666655434 368889999999
Q ss_pred cCCCC-----CCCCCccchhhhhhccC
Q psy8863 194 NEGIS-----PRHNPEFTMIEFYAAYT 215 (442)
Q Consensus 194 ~E~~~-----~rHl~EFtmlE~e~~~~ 215 (442)
..+.+ +||+.=|.|| .-++|.
T Consensus 125 ~nDldnVG~t~rH~TfFEMl-Gn~sFg 150 (902)
T TIGR03683 125 LNDIDNVGRTGRHLTCFEMM-AHHAFN 150 (902)
T ss_pred ccccccccCCCCcchhhhhc-cceeeC
Confidence 97643 4999999998 444554
No 125
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=94.76 E-value=0.058 Score=56.23 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhhC--CcEEecCceeec
Q psy8863 115 KKRTQIISSIRHFMEKN--DFMEVETPILHN 143 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~--gF~EV~TPiL~~ 143 (442)
.++..|.++.|++|... +++||+||+|.+
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 45778999999999884 799999999986
No 126
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=94.73 E-value=0.13 Score=58.30 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhcc-----CCceEEEeccccc
Q psy8863 120 IISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG-----FNKIFEINKNFRN 194 (442)
Q Consensus 120 i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-----~~rvf~i~~~FR~ 194 (442)
+-+.+-+||.++|..-|.+--+.+ - + ..+++|+.++..-.|-.+.+| ..|+-...||.|.
T Consensus 64 iR~~Fl~FF~~~gH~~v~s~pvvp--r------------w-~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~ 128 (900)
T PRK13902 64 MREKFLSFFEKHGHTRIERYPVVA--R------------W-RDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRL 128 (900)
T ss_pred HHHHHHHHHHhCCCEEcCCcCcCC--C------------C-CCCeeeeecchhhhhHHhcCCCCCCCCCCceecccccch
Confidence 445566899999988776322221 0 0 122667777666666655434 3688999999999
Q ss_pred CCCC-----CCCCCccchhhhhhccC
Q psy8863 195 EGIS-----PRHNPEFTMIEFYAAYT 215 (442)
Q Consensus 195 E~~~-----~rHl~EFtmlE~e~~~~ 215 (442)
.+.+ +||+.=|.|| .-++|.
T Consensus 129 nDldnVG~t~rH~T~FEMl-Gn~sFg 153 (900)
T PRK13902 129 NDIDNVGRTGRHLTSFEMM-AHHAFN 153 (900)
T ss_pred hhhhhccccCCchhhhhhc-cceeeC
Confidence 7643 4999999998 334443
No 127
>KOG2324|consensus
Probab=94.62 E-value=0.23 Score=49.39 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCC----CCCCceeeccCCCCcceeeecCHHHHHHHHHhccC--
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGG----AIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGF-- 182 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g----~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~-- 182 (442)
-+|.-.++.+.++.-|++-|=.+|.-|+|++. ..| .+.+.|.. .+..++.+.|+-.-|=-...+|+.-.
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl-~Dr~gkq~cL~pThEE~iT~lmat~~~l 129 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRL-HDRKGKQMCLTPTHEEDITALMATYIPL 129 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEe-eccCCCEeccCCchHHHHHHHHHhcCcc
Confidence 34666789999999999999999999999974 222 13345544 34567777787665555556665433
Q ss_pred ------CceEEEecccccCCCC---CCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHh
Q psy8863 183 ------NKIFEINKNFRNEGIS---PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDC 235 (442)
Q Consensus 183 ------~rvf~i~~~FR~E~~~---~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~ 235 (442)
-+|||||+-||+|--- --+--||.|=|+|.-..|-++-|+.- .++.....++
T Consensus 130 sykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy-~~v~~aY~~i 190 (457)
T KOG2324|consen 130 SYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTY-QLVDQAYDRI 190 (457)
T ss_pred ccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHH-HHHHHHHHHH
Confidence 3899999999999632 25667999999997766766666533 3333333443
No 128
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=94.60 E-value=0.16 Score=51.80 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhhCCcEEecCceeecC----CC-CCC--CCceeeccCCCCcceeeecC--HHHHHHH--HHhccCC
Q psy8863 115 KKRTQIISSIRHFMEKNDFMEVETPILHNK----PG-GAI--AKPFITHHNSLNMKMFLRIA--PELYLKR--LIIGGFN 183 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~-g~~--~~~f~~~~~~~~~~~~L~~S--pql~lk~--ll~~g~~ 183 (442)
+....+.+.+++.|...||..|+||.|... .+ |+. .+.|++. +..++.+-||-- +++-... .+.+...
T Consensus 18 ~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~-d~~g~~l~LRpD~T~pVaR~~~~~~~~~P~ 96 (390)
T COG3705 18 RRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLE-DETGGRLGLRPDFTIPVARIHATLLAGTPL 96 (390)
T ss_pred hhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEe-cCCCCeEEecccccHHHHHHHHHhcCCCCc
Confidence 456677888899999999999999999952 22 332 4667654 334555667632 3332221 1234578
Q ss_pred ceEEEecccccCCCCCCCCCccchhhhhhccC
Q psy8863 184 KIFEINKNFRNEGISPRHNPEFTMIEFYAAYT 215 (442)
Q Consensus 184 rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~ 215 (442)
|+++.|++||+.+.......||+|+-+|.-+.
T Consensus 97 Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 97 RLSYAGKVFRAREGRHGRRAEFLQAGIELLGD 128 (390)
T ss_pred eeeecchhhhcchhccCcccchhhhhhHHhCC
Confidence 99999999999944457778999999998876
No 129
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=94.54 E-value=0.12 Score=47.92 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecC-C---CCCCC-CceeeccCCCCcceeeecC--HHHHHHHHH--hcc--CCceEE
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNK-P---GGAIA-KPFITHHNSLNMKMFLRIA--PELYLKRLI--IGG--FNKIFE 187 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~-~---~g~~~-~~f~~~~~~~~~~~~L~~S--pql~lk~ll--~~g--~~rvf~ 187 (442)
.+.+.+|++|...||.|+-|..+++. . -+... .+......--..-.+||+| |.+..-..- ..+ --|+||
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFE 83 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFE 83 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence 45567899999999999999999864 1 00000 1122111111122345555 333322111 122 239999
Q ss_pred EecccccCCCCCCCCCccchhhhhhcc-------------CCHHHHHHHHHHHHHH
Q psy8863 188 INKNFRNEGISPRHNPEFTMIEFYAAY-------------TNYIWLMKFTEKMIKK 230 (442)
Q Consensus 188 i~~~FR~E~~~~rHl~EFtmlE~e~~~-------------~~~~dl~~~~e~li~~ 230 (442)
||+||..+.. +..|.+.+=+-.++ .|+.|+...++.++..
T Consensus 84 iG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~ 136 (198)
T cd00769 84 IGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRA 136 (198)
T ss_pred eEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHH
Confidence 9999976531 21233333222221 3677788877777754
No 130
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=93.98 E-value=0.095 Score=55.83 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhh-hCCcEEecCceeec
Q psy8863 115 KKRTQIISSIRHFME-KNDFMEVETPILHN 143 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~-~~gF~EV~TPiL~~ 143 (442)
.++..+++..|++|. +.+++||+||+|++
T Consensus 38 ~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 38 VLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 578889999999885 78899999999986
No 131
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=93.73 E-value=0.49 Score=38.72 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=47.8
Q ss_pred cCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhc--CCCCCcEEEEEEEEeec-CCceeEEEEeEEE
Q psy8863 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFK--NYDIGDIIGAKGTLFKT-NTGELSIKVSSLK 74 (442)
Q Consensus 6 ~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~--~L~~gs~V~V~G~v~~~-~~~~~el~~~~i~ 74 (442)
.++-+|.+|.|+. ..++|++-+... ..+. .++.|+-|.|.|.+.-- +.|.+.+.+.+++
T Consensus 37 ~~gh~YftLkD~~-----a~i~~~~~~~~~-----~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v~~i~ 98 (99)
T PF13742_consen 37 SSGHVYFTLKDEE-----ASISCVIFRSRA-----RRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIVEDID 98 (99)
T ss_pred CCceEEEEEEcCC-----cEEEEEEEHHHH-----hhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEEEEeE
Confidence 5677999999999 999999987642 2333 68999999999999864 5577999998864
No 132
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=93.31 E-value=0.63 Score=37.59 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=43.6
Q ss_pred cccCCeEEEEEecCCCCCCCccEEEEEeCCccCch---------------h-hhhhcCCCCCcEEEEEEEEeecCCceeE
Q psy8863 4 RVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKN---------------L-YTDFKNYDIGDIIGAKGTLFKTNTGELS 67 (442)
Q Consensus 4 R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~---------------~-~~~~~~L~~gs~V~V~G~v~~~~~~~~e 67 (442)
+......-+.|.||| |.|-|++......++ + .+....+..|++|.|.|++..- ++...
T Consensus 10 ~~~~~~~~~tLdDgT-----G~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~f-rg~~q 83 (92)
T cd04483 10 RERETFYSFGVDDGT-----GVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTY-RGERE 83 (92)
T ss_pred EecCCeEEEEEecCC-----ceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEecc-CCeeE
Confidence 333344557899999 999999997542111 0 1244579999999999999743 34566
Q ss_pred EEEeEEE
Q psy8863 68 IKVSSLK 74 (442)
Q Consensus 68 l~~~~i~ 74 (442)
|.++.+.
T Consensus 84 l~i~~~~ 90 (92)
T cd04483 84 INASVVY 90 (92)
T ss_pred EEEEEEE
Confidence 6666553
No 133
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=93.05 E-value=0.83 Score=48.07 Aligned_cols=32 Identities=31% Similarity=0.638 Sum_probs=25.2
Q ss_pred CccceehhHHHHHHHHcCCCCcccc--ccCCCCC
Q psy8863 408 PASGCGIGVDRLIMLLTNSKNIRDV--ILFPHLR 439 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~~~Irdv--~~FPr~~ 439 (442)
|...|+|++|||+|...+.+|||.. -.||+.+
T Consensus 317 pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFP 350 (529)
T PRK06253 317 PVMNLGLGVERLAMILYGAEDVREMVYPQFYEWE 350 (529)
T ss_pred ceEEEEEeHHHHHhhhcCcccccccCcCCCCCCC
Confidence 4578999999999999998999984 2444443
No 134
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=92.97 E-value=0.29 Score=37.63 Aligned_cols=58 Identities=17% Similarity=0.363 Sum_probs=44.2
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhh-hhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYT-DFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
..+++.+.|++ +.+.+++-.+ .++ ....+..|..|.|.|.+.... +..++.+.++..+
T Consensus 19 ~~~~~~l~D~t-----g~~~~~~f~~-----~~~~~~~~l~~g~~v~v~G~v~~~~-~~~~l~~~~i~~~ 77 (84)
T cd04485 19 RMAFVTLEDLT-----GSIEVVVFPE-----TYEKYRDLLKEDALLLVEGKVERRD-GGLRLIAERIEDL 77 (84)
T ss_pred EEEEEEEEeCC-----CeEEEEECHH-----HHHHHHHHhcCCCEEEEEEEEEecC-CceEEEeeccccH
Confidence 46899999999 9999999753 232 225689999999999998643 5678887766544
No 135
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=92.88 E-value=0.46 Score=53.78 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHh----ccCCceEEEeccccc
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII----GGFNKIFEINKNFRN 194 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~g~~rvf~i~~~FR~ 194 (442)
++-+.+-+||.++|..-|.+--|.+. . +.+.+++-|.....|-.+. ....|+=...+|.|+
T Consensus 6 eiR~~fl~fF~~~~H~~v~s~~lvp~--~-------------d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~ 70 (865)
T PRK00252 6 EIRQKFLDFFESKGHTVVPSASLVPK--N-------------DPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRT 70 (865)
T ss_pred HHHHHHHHHHHhCCCEEecCCCcCCC--C-------------CCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc
Confidence 45566778999999988875444431 1 1122233333222233222 123688999999999
Q ss_pred CCCC-----CCCCCccchhhhhhccCCH--HHHHHHHHHHHHH
Q psy8863 195 EGIS-----PRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIKK 230 (442)
Q Consensus 195 E~~~-----~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~~ 230 (442)
.+.+ +||..=|.|| .-++|.|| ++.++.+-+|+-.
T Consensus 71 nDld~VG~t~rHhTfFEMl-Gn~sfgdYfK~eai~~awe~lt~ 112 (865)
T PRK00252 71 NDLENVGYTARHHTFFEML-GNFSFGDYFKEEAIEWAWELLTS 112 (865)
T ss_pred cchhhccCCCCchHHHHHh-cccchhhhhHHHHHHHHHHHHHH
Confidence 6532 4999999998 55667675 6777777777655
No 136
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=92.70 E-value=0.33 Score=50.94 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhh--hCCcEEecCceeecC----CCCCCCCce-----------------------------------
Q psy8863 115 KKRTQIISSIRHFME--KNDFMEVETPILHNK----PGGAIAKPF----------------------------------- 153 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~--~~gF~EV~TPiL~~~----~~g~~~~~f----------------------------------- 153 (442)
.++..|++..+++|. ..+.+||+||+|.+. ..|+ ...|
T Consensus 41 ~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH-~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~ 119 (539)
T PRK14894 41 ELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGH-EETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPR 119 (539)
T ss_pred HHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccC-CCCCCCceeECCCCCccccCccceeeCCCCCCcCCCcce
Confidence 456778888888774 557789999998752 2221 1111
Q ss_pred ------eeccCC-C--CcceeeecC----HHHHHHHHHhccC----CceEEEecccccCCCC---CCCCCccchhhhhhc
Q psy8863 154 ------ITHHNS-L--NMKMFLRIA----PELYLKRLIIGGF----NKIFEINKNFRNEGIS---PRHNPEFTMIEFYAA 213 (442)
Q Consensus 154 ------~~~~~~-~--~~~~~L~~S----pql~lk~ll~~g~----~rvf~i~~~FR~E~~~---~rHl~EFtmlE~e~~ 213 (442)
.|...- - +..+|||-- -=+.-+.++...- =-+-|||++||||=+- --+.-||+|.|+|.-
T Consensus 120 ~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~F 199 (539)
T PRK14894 120 PFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYF 199 (539)
T ss_pred eccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEE
Confidence 111100 0 146888732 2222334332221 2579999999999433 257889999999965
Q ss_pred c
Q psy8863 214 Y 214 (442)
Q Consensus 214 ~ 214 (442)
.
T Consensus 200 v 200 (539)
T PRK14894 200 V 200 (539)
T ss_pred e
Confidence 4
No 137
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=92.02 E-value=1.2 Score=35.76 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=47.1
Q ss_pred cCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 6 ~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
.|.=+|+.|.|.+ +.|.+++-+..- ........|..||-|.|.|.+..-. .|.++++++.+-.
T Consensus 15 ~sGH~yFtlkD~~-----~~i~cv~f~~~g--~~~~~~~~l~~Gd~V~v~G~v~~y~----ql~ve~l~~~glg 77 (91)
T cd04482 15 EGGHVFFKISDGT-----GEIDCAAYEPTK--EFRDVVRLLIPGDEVTVYGSVRPGT----TLNLEKLRVIRLA 77 (91)
T ss_pred CCCCEEEEEECCC-----cEEEEEEECccc--ccccccCCCCCCCEEEEEEEEecCC----EEEEEEEEECCCc
Confidence 4555899999999 999999876531 0112335799999999999987554 6889998887654
No 138
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=91.09 E-value=2 Score=34.38 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
+.-.=+.|.|+| |.|-+.+......+. -.....+..|+.|.|.|++..-+ +...|.+..+..+..
T Consensus 15 ~~~~~~tL~D~T-----G~I~~~~W~~~~~~~-~~~~~~~~~g~~v~v~G~v~~~~-g~~ql~i~~i~~v~d 79 (95)
T cd04478 15 STNITYTIDDGT-----GTIEVRQWLDDDNDD-SSEVEPIEEGTYVRVFGNLKSFQ-GKKSIMAFSIRPVTD 79 (95)
T ss_pred ccEEEEEEECCC-----CcEEEEEeCCCCCcc-cccccccccCCEEEEEEEEcccC-CeeEEEEEEEEEeCC
Confidence 434447899999 999999986542110 01246789999999999997544 667788888776654
No 139
>PLN02900 alanyl-tRNA synthetase
Probab=90.12 E-value=2.4 Score=48.36 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhc---------cCCceEEEe
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG---------GFNKIFEIN 189 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~---------g~~rvf~i~ 189 (442)
.|-+.+-+||.++|...|.+--|.+. + +.+++++.|...-.|-.+.+ ...|+=...
T Consensus 15 eiR~~Fl~FF~~~gH~~v~s~slvp~--~-------------dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Q 79 (936)
T PLN02900 15 RIRRTFLSFFESKGHTFLPSSPLVPV--D-------------DPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQ 79 (936)
T ss_pred HHHHHHHHHHHhCCCEEeCCCCcCCC--C-------------CCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeec
Confidence 34455668999999999986655541 1 11122233322222222211 246789999
Q ss_pred ccccc----CC---CC--CCCCCccchhhhhhccCCH--HHHHHHHHHHHHH
Q psy8863 190 KNFRN----EG---IS--PRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIKK 230 (442)
Q Consensus 190 ~~FR~----E~---~~--~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~~ 230 (442)
+|.|. -+ .+ +||+.=|-|| .-++|.|| ++.+..+-+++-.
T Consensus 80 kCiR~gGKHnDlenVG~t~rHhTfFEMl-GnfSfgdYfK~eaI~~awe~lT~ 130 (936)
T PLN02900 80 KCIRAGGKHNDLDDVGKDTYHHTFFEML-GNWSFGDYFKKEAIGWAWELLTK 130 (936)
T ss_pred ccccCCCCCCCHhhccCCCCchHHHHhh-hccchhhhhHHHHHHHHHHHHHH
Confidence 99999 33 22 4998888887 44566675 5666666666544
No 140
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=89.87 E-value=4 Score=38.57 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhh-----CCcEEecCceeecCCCCCC-----C-CceeeccCCC-CcceeeecCHHHHHHHHHh-ccC--
Q psy8863 118 TQIISSIRHFMEK-----NDFMEVETPILHNKPGGAI-----A-KPFITHHNSL-NMKMFLRIAPELYLKRLII-GGF-- 182 (442)
Q Consensus 118 s~i~~~ir~ff~~-----~gF~EV~TPiL~~~~~g~~-----~-~~f~~~~~~~-~~~~~L~~Spql~lk~ll~-~g~-- 182 (442)
...|+.|+++|.. .+.+.|..|.+.....|-+ . +|........ +..+-..+|-.-|+.+++. -+|
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~ 86 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPP 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCC
Confidence 5567777777754 7999999999996533321 1 3333222223 4566677888888877664 244
Q ss_pred -CceEEEecccc-cCC-CCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhh
Q psy8863 183 -NKIFEINKNFR-NEG-ISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCI 236 (442)
Q Consensus 183 -~rvf~i~~~FR-~E~-~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~ 236 (442)
+.+|+=..+.| .|+ .|..|.-=.-|-|||.+...-+--++.+.+.++.+.+.+.
T Consensus 87 geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik 143 (244)
T PF03590_consen 87 GEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIK 143 (244)
T ss_dssp T-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHH
T ss_pred CceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHH
Confidence 69999999999 775 6899999999999999976444445555555555555544
No 141
>KOG2509|consensus
Probab=89.51 E-value=0.4 Score=48.91 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCC--ceeeccCCCCcceeeecCHHHHHHHH-----Hhc
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAK--PFITHHNSLNMKMFLRIAPELYLKRL-----IIG 180 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~--~f~~~~~~~~~~~~L~~Spql~lk~l-----l~~ 180 (442)
+...+-.+++++.-+|+.++||+-+.||.+... .+|--.+ .-....-.-+..-||.-..|..+-.+ +..
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~ 262 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEE 262 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhccccccc
Confidence 456678899999999999999999999999853 2221101 00100000113456654444443322 111
Q ss_pred --cCCceEEEecccccCC-CC---CC---CCCccchhhhhhc------cCCHHHHHHHHHHHHHH
Q psy8863 181 --GFNKIFEINKNFRNEG-IS---PR---HNPEFTMIEFYAA------YTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 181 --g~~rvf~i~~~FR~E~-~~---~r---Hl~EFtmlE~e~~------~~~~~dl~~~~e~li~~ 230 (442)
-.-|+--+++|||+|- ++ ++ +..+|+-+|.-.. +.-++++++..+++++.
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qs 327 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQS 327 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHH
Confidence 1247778899999996 22 34 5678999886432 22245555555555443
No 142
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=89.01 E-value=2.1 Score=48.51 Aligned_cols=93 Identities=15% Similarity=0.246 Sum_probs=58.0
Q ss_pred HHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHh----ccCCceEEEecccccCCC
Q psy8863 122 SSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII----GGFNKIFEINKNFRNEGI 197 (442)
Q Consensus 122 ~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~g~~rvf~i~~~FR~E~~ 197 (442)
+.+-+||.++|..-|.+--|.+. + +.+++++-|.....|-.+. ....|+=...+|.|+-+.
T Consensus 4 ~~fl~fF~~~gH~~v~s~slvp~--~-------------dptllf~nAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~nDl 68 (851)
T TIGR00344 4 QTFLDFFKEKGHQVIPSASLVPR--N-------------DPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRLNDI 68 (851)
T ss_pred HHHHHHHHhCCCEEcCCCCcCCC--C-------------CCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccccch
Confidence 45668999999988875555431 1 1122333333333333222 123788999999999653
Q ss_pred C-----CCCCCccchhhhhhccCCH--HHHHHHHHHHHHH
Q psy8863 198 S-----PRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIKK 230 (442)
Q Consensus 198 ~-----~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~~ 230 (442)
+ +||..=|-|| .-++|.|| ++.+..+-+|+-.
T Consensus 69 d~VG~t~rHhTfFEMl-GnfSFgdYfK~eai~~awe~lT~ 107 (851)
T TIGR00344 69 ENVGRTARHHTFFEML-GNFSFGDYFKEEAIAFAWELLTS 107 (851)
T ss_pred hhhcCCCcchhhHHhh-cccchhhhhHHHHHHHHHHHHhh
Confidence 3 4999999998 55677775 5667766666544
No 143
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=88.77 E-value=1 Score=43.48 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=43.7
Q ss_pred CCeEEEEEecCCCCCCCc--cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 7 GKISFIMLQDTSGPDSNG--KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~--~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
.+-+|+.|-|+| | .|.|+++.+.... .-..+..+ .|++|.|+|++. .+..+|.++.+.++.
T Consensus 86 ~~~~~l~iDD~S-----g~~~i~~~~~~~~~~~-~~l~~~~~-~G~~V~VkG~vs---r~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 86 EDRIILTIDDSS-----GANTIECKCSKSSYLS-MGLPINDL-IGKVVEVKGTVS---RNERQLDVERIELVR 148 (256)
T ss_dssp TCEEEEEEE-SS-----CS-EEEEEEEHHHHHC-CCHHCTT--TT-EEEEEEEEE---SSSEEEEEEEEEEET
T ss_pred cceEEEEEeCCC-----CceeEEEEEEcccccc-cCCCccCC-CCcEEEEEEEEc---cCcEEEEEEEEEccC
Confidence 467889999999 7 8999998663211 11123556 999999999999 667889999888764
No 144
>KOG1035|consensus
Probab=87.77 E-value=1.4 Score=50.58 Aligned_cols=116 Identities=17% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeec-C-CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhcc---CCceEE
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHN-K-PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG---FNKIFE 187 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~-~-~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g---~~rvf~ 187 (442)
.-.+|+.+...+.+-|..||++|++||-+.. . +--.+.+...+ .+.-|-.+-|..---+-.-+.++.. .-|-|+
T Consensus 931 ~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~-ld~sG~~v~Lp~DLr~pfar~vs~N~~~~~Kry~ 1009 (1351)
T KOG1035|consen 931 NNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVEL-LDHSGDVVELPYDLRLPFARYVSRNSVLSFKRYC 1009 (1351)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeee-ecCCCCEEEeeccccchHHHHhhhchHHHHHHhh
Confidence 3467889999999999999999999997763 1 21111122221 1112222323222111111222211 247799
Q ss_pred EecccccCCCCCCCCCccchhhhhhccCC----HHHHHHHHHHHHHHH
Q psy8863 188 INKNFRNEGISPRHNPEFTMIEFYAAYTN----YIWLMKFTEKMIKKI 231 (442)
Q Consensus 188 i~~~FR~E~~~~rHl~EFtmlE~e~~~~~----~~dl~~~~e~li~~i 231 (442)
|++|||.+. ++ |=-|++.+++-....+ -.+++.++-+++..+
T Consensus 1010 i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~ 1055 (1351)
T KOG1035|consen 1010 ISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEI 1055 (1351)
T ss_pred hheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHH
Confidence 999999998 44 9999999999877652 356777777766663
No 145
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=87.27 E-value=1.8 Score=36.58 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=40.8
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
...||+| |.|+|.++.+.... ..+++.|-|.+.|.+.+. -...||.|..|+.+
T Consensus 75 y~FrD~s-----GeI~VeIdd~~w~g------~tv~P~dkV~I~GevDk~-~~~~eIdV~~I~k~ 127 (128)
T COG3111 75 YVFRDAS-----GEINVDIDDKVWNG------QTVTPKDKVRIQGEVDKD-WNSVEIDVKHIEKL 127 (128)
T ss_pred EEEEcCC-----ccEEEEecccccCC------cccCcccEEEEEeEEcCC-CccceeEhhheEec
Confidence 4579999 99999998775321 468999999999999865 23467778777654
No 146
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=86.83 E-value=4.9 Score=29.30 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=42.0
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSL 73 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i 73 (442)
..+++.|.|++ ++.+.+++..+... .....+..|+.|.|.|++... .+...+.+.++
T Consensus 17 ~~~~~~l~D~~----~~~i~~~~~~~~~~----~~~~~~~~g~~v~v~g~v~~~-~~~~~l~~~~~ 73 (75)
T cd03524 17 KVLIFTLTDGT----GGTIRVTLFGELAE----ELENLLKEGQVVYIKGKVKKF-RGRLQLIVESI 73 (75)
T ss_pred eEEEEEEEcCC----CCEEEEEEEchHHH----HHHhhccCCCEEEEEEEEEec-CCeEEEEeeee
Confidence 67899999988 47899999865321 122468999999999999764 45677777654
No 147
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=86.54 E-value=5.2 Score=31.22 Aligned_cols=52 Identities=25% Similarity=0.447 Sum_probs=39.2
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhh--hh-cCCCCCcEEEEEEEEeecCCceeEEEEeE
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYT--DF-KNYDIGDIIGAKGTLFKTNTGELSIKVSS 72 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~--~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~ 72 (442)
|+- |+.|.|.+ |++.+++-++. |+ .. ..|..+.+|.|+|.+.. . ++ .+.+.+
T Consensus 17 g~~-~~~leD~~-----G~~Ev~~F~~~-----~~~~~~~~~l~~d~~v~v~g~v~~-~-~~-~l~~~~ 71 (79)
T cd04490 17 GHR-IVELEDTT-----GRITVLLTKDK-----EELFEEAEDILPDEVIGVSGTVSK-D-GG-LIFADE 71 (79)
T ss_pred CCE-EEEEECCC-----CEEEEEEeCch-----hhhhhhhhhccCCCEEEEEEEEec-C-CC-EEEEEE
Confidence 555 99999999 99999998764 33 33 45899999999999965 2 33 566554
No 148
>KOG0188|consensus
Probab=85.94 E-value=1.8 Score=46.99 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceee-ccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCC
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFIT-HHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEG 196 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~-~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~ 196 (442)
+.+-+++-+||.+++-.-|++.-..+-..+. =.|.- -.+.| +|.||-+ .+.+.|+....+|.|+.+
T Consensus 5 ~evR~tFldfF~~k~H~~V~SSsViP~dDpT--LLFaNAGMNQF-KpifLgt----------~a~lkRa~NsQKCIRAGG 71 (895)
T KOG0188|consen 5 SEVRKTFLDFFKSKHHKIVHSSSVIPFDDPT--LLFANAGMNQF-KPIFLGT----------MAKLKRAANSQKCIRAGG 71 (895)
T ss_pred HHHHHHHHHHHHhcCceEeccCCcccCCCCe--eEEeccchhhc-chhhhhc----------hhhhHhhhhhhhHHhccC
Confidence 4555667789999998777755444321110 01110 01122 5666655 256799999999999975
Q ss_pred C---------CCCCCCccchhhhhhccCCH--HHHHHHHHHHHHHHHH
Q psy8863 197 I---------SPRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIKKIIM 233 (442)
Q Consensus 197 ~---------~~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~~i~~ 233 (442)
. |..|..=|-|| .-|+|.|| ++.+..+-+|+..+..
T Consensus 72 KHNDLdDVGkD~yHhTfFEMl-GNWSFGdYfK~Eac~~AwelLt~vyg 118 (895)
T KOG0188|consen 72 KHNDLDDVGKDFYHHTFFEML-GNWSFGDYFKEEACAWAWELLTFVYG 118 (895)
T ss_pred CcCChhHhchhccccCchhhc-CCCCcchHHHHHHHHHHHHHHHHhhc
Confidence 2 24688888887 55777775 7788888888776543
No 149
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=84.40 E-value=5 Score=34.48 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=43.7
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEe---EEEEEecc
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVS---SLKLITKS 79 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~---~i~vl~~~ 79 (442)
+.-+.|.|.| +.|.+.+..+.. ..|..||+|.|.|..+..-.|.++|.+. .+..+.+.
T Consensus 41 v~~~~l~D~T-----G~I~~tlW~~~a--------~~l~~GdvV~I~na~v~~f~G~lqL~i~~~~~i~~~~~~ 101 (129)
T PRK06461 41 ISEAVVGDET-----GRVKLTLWGEQA--------GSLKEGEVVEIENAWTTLYRGKVQLNVGKYGSISESDDE 101 (129)
T ss_pred EEEEEEECCC-----CEEEEEEeCCcc--------ccCCCCCEEEEECcEEeeeCCEEEEEECCCEEEEECCcc
Confidence 5568899999 999999987642 4678999999995444445677899998 46665553
No 150
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=83.39 E-value=3.2 Score=44.75 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhhCCcEEecCceeecCCC-----CCCC-CceeeccCCCCcceeeecC--HHHHHHHHHhccC-----C
Q psy8863 117 RTQIISSIRHFMEKNDFMEVETPILHNKPG-----GAIA-KPFITHHNSLNMKMFLRIA--PELYLKRLIIGGF-----N 183 (442)
Q Consensus 117 rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~-----g~~~-~~f~~~~~~~~~~~~L~~S--pql~lk~ll~~g~-----~ 183 (442)
...+.+.+|++|...||.|+-|-.+++... +-.. ........--..--+||+| |.+..- ++... -
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~--~~~N~~~~~~~ 441 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLET--LSENKHHELPQ 441 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHH--HHhcccCCCCe
Confidence 445667789999999999999999986411 0000 0011111111223456666 444322 22221 3
Q ss_pred ceEEEecccccCCCCCCCCCccchhhhhhcc--CCHHHHHHHHHHHHHH
Q psy8863 184 KIFEINKNFRNEGISPRHNPEFTMIEFYAAY--TNYIWLMKFTEKMIKK 230 (442)
Q Consensus 184 rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~--~~~~dl~~~~e~li~~ 230 (442)
|+||||++|...+.+..+..++.++-+-.++ .|+.++...+|.++..
T Consensus 442 ~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~ 490 (551)
T TIGR00471 442 KIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARE 490 (551)
T ss_pred eEEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 8999999996543212244455666665554 3788999988888754
No 151
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=82.84 E-value=7.8 Score=30.09 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=40.7
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEE-EEEeecCCceeEEEEeEE
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAK-GTLFKTNTGELSIKVSSL 73 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~-G~v~~~~~~~~el~~~~i 73 (442)
+++.=+.|.|.+ |.|.+++..... ...+..|++|.++ |.+. .-.+.++|.+.+.
T Consensus 22 ~~~~~~~l~D~T-----G~i~~~~W~~~~-------~~~~~~G~vv~i~~~~v~-~~~g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDET-----GTIRFTLWDEKA-------ADDLEPGDVVRIENAYVR-EFNGRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCC-----CEEEEEEECchh-------cccCCCCCEEEEEeEEEE-ecCCcEEEEeCCc
Confidence 355568899999 999999987642 3568999999999 6654 4446788877653
No 152
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=82.70 E-value=4.9 Score=33.17 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=34.8
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEE
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLK 74 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~ 74 (442)
..++|++ |.|+|-++.+... -..+++++-|+|.|.+.+.- ...+|.|..|+
T Consensus 52 Y~F~D~T-----G~I~VeId~~~w~------g~~vt~~~~Vri~GeVDk~~-~~~~IdV~~I~ 102 (103)
T PF04076_consen 52 YLFRDAT-----GEIEVEIDDDVWR------GQTVTPDDKVRISGEVDKDW-NKTEIDVDRIE 102 (103)
T ss_dssp EEEEETT-----EEEEEE--GGGST------T----TTSEEEEEEEEEEET-TEEEEEEEEEE
T ss_pred EEEECCC-----CcEEEEEChhhcC------CcccCCCCEEEEEEEEeCCC-CceEEEEEEEE
Confidence 3569999 9999999876432 14689999999999999554 45788887764
No 153
>PRK10053 hypothetical protein; Provisional
Probab=81.28 E-value=5.4 Score=34.32 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=39.4
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEE
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLK 74 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~ 74 (442)
...+|++ |.|+|-++.+... -..++++|-|++.|.+.+.- ...||.|++|+
T Consensus 79 Y~F~D~t-----G~I~VeID~~~w~------G~~v~p~~kV~I~GevDk~~-~~~~IdV~~i~ 129 (130)
T PRK10053 79 YVFRDKS-----GEINVIIPAAVFD------GREVQPDQMININGSLDKKS-APPVVRVTHLQ 129 (130)
T ss_pred EEEECCC-----CcEEEEeCHHHcC------CCcCCCCCEEEEEEEECCCC-CCeEEEEEEEe
Confidence 3569999 9999999876432 14689999999999998653 35778887765
No 154
>PRK07080 hypothetical protein; Validated
Probab=81.17 E-value=1.2 Score=43.92 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=37.4
Q ss_pred ceEEE-ecccccCCCC-CCCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 184 KIFEI-NKNFRNEGIS-PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 184 rvf~i-~~~FR~E~~~-~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
++|.+ |.|||.|++. .+++-||+|-|+-+.+ +-+.+.+.-+..+...
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHH
Confidence 66665 9999999976 4999999999998877 6677777766666554
No 155
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=80.29 E-value=6.7 Score=33.57 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=38.5
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEE
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLK 74 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~ 74 (442)
..++|++ |.|+|-++.+... -..++++|-|+|.|.|.+.- ...||.|.+|+
T Consensus 75 Y~F~D~T-----G~I~VeId~~~w~------G~~v~p~d~V~I~GeVDk~~-~~~~IdV~~I~ 125 (126)
T TIGR00156 75 YVFRDKS-----GEINVVIPAAVWN------GREVQPKDMVNISGSLDKKS-APAEVDVTHIQ 125 (126)
T ss_pred EEEECCC-----CCEEEEECHHHcC------CCcCCCCCEEEEEEEECCCC-CCeEEEEEEEE
Confidence 4579999 9999999876432 13689999999999998542 35677777765
No 156
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=76.91 E-value=9.8 Score=37.92 Aligned_cols=60 Identities=27% Similarity=0.397 Sum_probs=47.1
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
-.-+.|.|.| |.|.+.+.... + +....+..|++|.|.|.+..- +|.+.+.+.+++.+.+.
T Consensus 34 yl~l~l~D~t-----G~I~ak~W~~~--~---~~~~~~~~g~vv~v~G~v~~y-~g~~Ql~i~~i~~~~~~ 93 (314)
T PRK13480 34 FLTLILQDKS-----GDIEAKLWDVS--P---EDEATYVPETIVHVKGDIINY-RGRKQLKVNQIRLATEE 93 (314)
T ss_pred EEEEEEEcCC-----cEEEEEeCCCC--h---hhHhhcCCCCEEEEEEEEEEE-CCcceEEEEEeEECCCC
Confidence 4568899999 99999998653 1 224568999999999999743 45677889999988774
No 157
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=74.33 E-value=9.6 Score=39.23 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=45.7
Q ss_pred ccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 5 VMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 5 ~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
.-|+..|+.+.|+. +.|=+++-.... +.-+.+..|..||.|.+.|.+.... |.+++++|+.
T Consensus 282 ieGghv~v~i~d~~-----G~I~~~A~eptk--~fr~~a~~L~pGD~i~~~G~~~~~~-----~n~ek~~v~~ 342 (421)
T COG1571 282 IEGGHVVVEITDGE-----GEIGAVAFEPTK--EFRELARKLIPGDEITVYGSVKPGT-----LNLEKFQVLK 342 (421)
T ss_pred eeCCEEEEEecCCC-----ceEEEEEecccc--cchHHHHhcCCCCEEEEecCccccc-----eeEEEEEEEE
Confidence 35788999999999 988888875532 2334568899999999999887433 6666666544
No 158
>PRK00036 primosomal replication protein N; Reviewed
Probab=73.50 E-value=9.4 Score=31.69 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=38.1
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEecc
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITKS 79 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~~ 79 (442)
..||+|+... ..+.+..++.|+.|.|+|.+..+.. ..+=|+++.|+.+.+.
T Consensus 47 ~~i~ava~G~-----~a~~~~~l~~Gs~v~v~GFLa~~~~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 47 LTISAVALGD-----LALLLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEEhh-----HHHHhcccCCCCEEEEEEEEEECCCCCCcEEEEhHHeEEcccc
Confidence 4578888763 2345567999999999999986433 4688899999887554
No 159
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=72.18 E-value=11 Score=39.46 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=45.5
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
.++|+.|.|.+ |.+.+|+-++ .|+.. ..|..+.+|.|+|++... .+.+.+.+.++.-+
T Consensus 302 ~maf~~leD~t-----G~ie~vvFp~-----~y~~~~~~l~~~~~v~v~G~v~~~-~~~~~liv~~i~~l 360 (449)
T PRK07373 302 PMAFLQLEDLS-----GQSEAVVFPK-----SYERISELLQVDARLIIWGKVDRR-DDQVQLIVEDAEPI 360 (449)
T ss_pred EEEEEEEEECC-----CCEEEEECHH-----HHHHHHHHhccCCEEEEEEEEEec-CCeEEEEEeEeecH
Confidence 57999999999 9999999754 45544 458999999999999753 35677888776533
No 160
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=71.89 E-value=33 Score=26.82 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=38.8
Q ss_pred CCeE-EEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCC-CCcEEEEEEEEeecC-CceeEEEEeEEE
Q psy8863 7 GKIS-FIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYD-IGDIIGAKGTLFKTN-TGELSIKVSSLK 74 (442)
Q Consensus 7 g~~~-Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~-~gs~V~V~G~v~~~~-~~~~el~~~~i~ 74 (442)
|+.+ -+.|.|.+ +.+-|..=.+. ..+.+..|+ .|+.|.|.|.+.-.. .++..+.+..+.
T Consensus 19 g~~i~~~~itD~t-----~Si~~K~F~~~----~~~~~~~ik~~G~~v~v~G~v~~D~f~~e~~~~i~~i~ 80 (82)
T cd04484 19 GRKILTFKVTDYT-----SSITVKKFLRK----DEKDKEELKSKGDWVRVRGKVQYDTFSKELVLMINDIE 80 (82)
T ss_pred CCEEEEEEEEcCC-----CCEEEEEeccC----ChhHHhhcccCCCEEEEEEEEEEccCCCceEEEeeeEE
Confidence 4444 47789998 66666554321 123346788 999999999987543 467777776553
No 161
>PLN02734 glycyl-tRNA synthetase
Probab=71.58 E-value=1.6 Score=47.73 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=25.0
Q ss_pred ceEEEecccccCCCC---CCCCCccchhhhhhcc
Q psy8863 184 KIFEINKNFRNEGIS---PRHNPEFTMIEFYAAY 214 (442)
Q Consensus 184 rvf~i~~~FR~E~~~---~rHl~EFtmlE~e~~~ 214 (442)
-+-|||++||||=+- --++-||+|.|+|.-.
T Consensus 277 ~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv 310 (684)
T PLN02734 277 AAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFV 310 (684)
T ss_pred eeeeccHhhhcccCcccceeeechhhhhhhheec
Confidence 579999999999432 2588999999998643
No 162
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=71.32 E-value=12 Score=34.13 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=41.1
Q ss_pred ccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh---cCCCCCcEEEEEEEEeecCCceeEEEEe
Q psy8863 5 VMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF---KNYDIGDIIGAKGTLFKTNTGELSIKVS 71 (442)
Q Consensus 5 ~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~---~~L~~gs~V~V~G~v~~~~~~~~el~~~ 71 (442)
..+++.++.|.||+ |++-+++..+. ++..... .-+..|++|.|+|.+..-+ |..|+++.
T Consensus 67 ~~~gi~~l~lndgt-----Gti~vva~~~t--ee~l~~n~~~p~~~eGe~veVtGrv~~yr-G~~eVkvn 128 (204)
T COG4085 67 IGGGIESLVLNDGT-----GTITVVASRST--EETLELNEGMPVTVEGEIVEVTGRVEEYR-GSSEVKVN 128 (204)
T ss_pred cccceEEEEEECCC-----CcEEEEEecCh--hHhHhhcCCCCccccCcEEEEEEEEEEeC-CCceeecc
Confidence 34688999999999 99999998774 1222211 1357999999999987543 33455544
No 163
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=70.58 E-value=28 Score=25.60 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=36.6
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIK 69 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~ 69 (442)
+..-+.+.|++ +.+.++.-... .+ ..+.++.|+.+.|.|++.... +.+++.
T Consensus 18 ~~~~~~~~D~~-----g~i~~~~F~~~----~~-~~~~~~~G~~~~v~Gkv~~~~-~~~qi~ 68 (75)
T cd04488 18 RRLKVTLSDGT-----GTLTLVFFNFQ----PY-LKKQLPPGTRVRVSGKVKRFR-GGLQIV 68 (75)
T ss_pred cEEEEEEEcCC-----CEEEEEEECCC----HH-HHhcCCCCCEEEEEEEEeecC-CeeEEe
Confidence 45667899999 99999987521 11 135689999999999998643 344443
No 164
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=70.37 E-value=11 Score=40.95 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhCCcEEecCceeecCCC-----C-CCC--CceeeccCCCCcceeeecC--HHHHHHHHHhcc-----
Q psy8863 117 RTQIISSIRHFMEKNDFMEVETPILHNKPG-----G-AIA--KPFITHHNSLNMKMFLRIA--PELYLKRLIIGG----- 181 (442)
Q Consensus 117 rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~-----g-~~~--~~f~~~~~~~~~~~~L~~S--pql~lk~ll~~g----- 181 (442)
...+.+.+|+.|...||.|+-|-.|++... + ... .........-..--.||+| |.+..- ++..
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~--l~~N~~~~~ 476 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKT--LGHNKDAPK 476 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHH--HHHhhcCCC
Confidence 345666789999999999999999986411 0 000 0111111111112335665 333322 2222
Q ss_pred CCceEEEecccccCCCCCCCCCccchhhhhhcc--CCHHHHHHHHHHHHHH
Q psy8863 182 FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAY--TNYIWLMKFTEKMIKK 230 (442)
Q Consensus 182 ~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~--~~~~dl~~~~e~li~~ 230 (442)
.-|+||||.||-.+....+...|-++|=+-.++ +++.++...++.++..
T Consensus 477 p~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~ 527 (597)
T PLN02265 477 PIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEV 527 (597)
T ss_pred CeeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHH
Confidence 248999999995432111111233343333333 3688888888877754
No 165
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=70.31 E-value=5.1 Score=37.98 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=40.8
Q ss_pred ceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHc
Q psy8863 345 NITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLT 424 (442)
Q Consensus 345 ~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~ 424 (442)
.+...+|+.++|+||. |-.-|.+ .|.-+ + -|-++-+--|+|||.|.+-
T Consensus 126 awGlGWEVWldGMEvT-----------QFTYFQQ------vGGie-c--------------~pV~~EITYGlERlAmYiQ 173 (298)
T COG0752 126 AWGLGWEVWLDGMEVT-----------QFTYFQQ------VGGLE-C--------------KPVSGEITYGLERLAMYIQ 173 (298)
T ss_pred ccccceeEEEcCeeee-----------eeehhhh------hCCee-c--------------cceeeeeehhHHHHHHHHh
Confidence 3566899999999983 2222332 22222 1 2345567889999999999
Q ss_pred CCCCccccccC
Q psy8863 425 NSKNIRDVILF 435 (442)
Q Consensus 425 g~~~Irdv~~F 435 (442)
|.+||-|+..-
T Consensus 174 ~vdnVydl~W~ 184 (298)
T COG0752 174 GVDNVYDLEWN 184 (298)
T ss_pred CccceeEEeec
Confidence 99999998653
No 166
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=67.70 E-value=5.8 Score=40.78 Aligned_cols=16 Identities=44% Similarity=0.827 Sum_probs=14.0
Q ss_pred CCccceehhHHHHHHH
Q psy8863 407 PPASGCGIGVDRLIML 422 (442)
Q Consensus 407 pp~~G~giGieRL~m~ 422 (442)
.|..||++|+|||+.+
T Consensus 304 ~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 304 RPATGFSLDLDRLLEL 319 (391)
T ss_pred CCCceEEeeHHHHHhh
Confidence 3788999999999984
No 167
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=67.19 E-value=14 Score=43.39 Aligned_cols=61 Identities=15% Similarity=0.324 Sum_probs=47.8
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
.++|+.|.|.+ +.+.+++-++ .|+.. ..|..|.+|.|+|++.....+.+.+.+.++.-+..
T Consensus 1013 ~maf~~leD~~-----g~~e~~vfp~-----~~~~~~~~l~~~~~~~v~g~v~~~~~~~~~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1013 MMAFLTLEDLY-----GTVEVIVFPK-----VYEKYRSLLNEDNIVLIKGRVSLREDEEPKLICEEIEPLVI 1074 (1151)
T ss_pred eEEEEEEEECC-----CcEEEEECHH-----HHHHHHHHhccCCEEEEEEEEEecCCCceEEEEeeeecHhh
Confidence 47999999999 9999999754 44444 45899999999999975445567888888765543
No 168
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=66.76 E-value=14 Score=42.90 Aligned_cols=60 Identities=13% Similarity=0.280 Sum_probs=47.5
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
+++|+.|.|.+ |.+.+++-++ .|+.. ..|..|..+.|+|++... .+.+.+.++++.-+..
T Consensus 973 Gmaf~~leD~~-----g~~e~~ifp~-----~~~~~~~~l~~~~~~~v~g~v~~~-~~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 973 GVTFLTLEDET-----GMVNVVVWPG-----LWERQRREALGARLLLVRGRVQNA-EGVRHLVADRLEDLSP 1033 (1046)
T ss_pred ceEEEEEecCC-----CCEEEEECHH-----HHHHHHHHhccCCEEEEEEEEEec-CCeEEEEEeeeechHH
Confidence 38999999999 9999999754 45444 458999999999999864 5567888888765544
No 169
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=65.44 E-value=14 Score=43.34 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=47.2
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
.++|+.|.|.+ |.+.+++-++ .|+.. ..|..|++|.|+|++... .+...+.++++.-+..
T Consensus 999 ~mafltLeD~T-----G~iEvviFp~-----~ye~~~~~L~~g~iV~V~GkVe~~-~~~~qlii~~I~~L~~ 1059 (1135)
T PRK05673 999 KMAIVTLEDLS-----GRIEVMLFSE-----ALEKYRDLLEEDRIVVVKGQVSFD-DGGLRLTAREVMDLEE 1059 (1135)
T ss_pred eEEEEEEEeCC-----CcEEEEECHH-----HHHHHHHHhccCCEEEEEEEEEec-CCeEEEEEeecccHHH
Confidence 47999999999 9999999754 44444 458999999999999753 4567888887765544
No 170
>PRK14699 replication factor A; Provisional
Probab=64.50 E-value=18 Score=38.23 Aligned_cols=63 Identities=16% Similarity=0.309 Sum_probs=45.7
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhc--CCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccCC
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFK--NYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLR 81 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~--~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~~ 81 (442)
++.=+.|-|.| |+|.+++..+.. +.+. .|..||+|.|.|.+..-. +++||.+.+.+++.++..
T Consensus 94 ~v~~~~iaDeT-----G~ir~tlW~~~a-----~~~~~g~l~~GDvv~I~~~~r~~~-~g~el~~~~~~~i~~~~~ 158 (484)
T PRK14699 94 RVGNLIVGDET-----GKIKLTLWDNMA-----DLIKAGKIKAGQTLQISGYAKQGY-SGVEVNIGNNGVLTESEE 158 (484)
T ss_pred EEEEEEEecCC-----CeEEEEEecCcc-----chhhhcCCCCCCEEEEcceeccCC-CCceEEeCCCceeeccCc
Confidence 44556899999 999999998652 1222 599999999999754333 447888877667666543
No 171
>PLN02972 Histidyl-tRNA synthetase
Probab=63.73 E-value=8.8 Score=42.72 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=16.7
Q ss_pred CCCccceehhHHHHHHHHcC
Q psy8863 406 MPPASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 406 ~pp~~G~giGieRL~m~l~g 425 (442)
-.|..||++|+|||+.++..
T Consensus 636 ~vPAVGFSiGIERL~~~L~~ 655 (763)
T PLN02972 636 QVPAVGVSLGIERVFAIMEQ 655 (763)
T ss_pred CCCEEEEEecHHHHHHHHHH
Confidence 34889999999999988753
No 172
>PRK15491 replication factor A; Provisional
Probab=63.63 E-value=22 Score=36.37 Aligned_cols=64 Identities=17% Similarity=0.380 Sum_probs=48.5
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh--cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccCC
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF--KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLR 81 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~--~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~~ 81 (442)
|++.=+.|-|.+ |.+++++..+... .+ ..|..|++|.|.|.+.+.-++ +||.+.+-..+.+|..
T Consensus 93 g~v~~~~v~DeT-----G~ir~tlW~~~a~-----~~~~~~le~G~v~~I~~~~~~~y~g-~Ei~i~~~~~i~~~~~ 158 (374)
T PRK15491 93 GRVGNIIVADET-----GSIRLTLWDDLAD-----LIKTGDIEVGKSLNISGYAKEGYSG-IEVNIGRYGGISESDE 158 (374)
T ss_pred eEEEEEEEEcCC-----CeEEEEEECchhh-----hhccCCcCCCCEEEEeeeeccCccc-EEEEeCCCceeeeccc
Confidence 455557899999 9999999987531 22 358999999999986544444 8999988777877753
No 173
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=63.50 E-value=8.9 Score=39.94 Aligned_cols=18 Identities=44% Similarity=1.126 Sum_probs=15.5
Q ss_pred CccceehhHHHHHHHHcC
Q psy8863 408 PASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g 425 (442)
|..||++|+|||++++..
T Consensus 300 PavGfa~g~erl~~~l~~ 317 (430)
T CHL00201 300 PAVGCAIGLERLLLIAKD 317 (430)
T ss_pred CeeEEEecHHHHHHHHhc
Confidence 677999999999998753
No 174
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=63.41 E-value=20 Score=29.30 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=39.6
Q ss_pred cCCeEEEEEecC-CCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEE-EeecC------CceeEEEEe
Q psy8863 6 MGKISFIMLQDT-SGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGT-LFKTN------TGELSIKVS 71 (442)
Q Consensus 6 ~g~~~Fi~lrD~-~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~-v~~~~------~~~~el~~~ 71 (442)
.|++.-++|.|. + +.|++++..+.+. .....|..|+++.++|- |.... .++.||...
T Consensus 33 ~g~~~~~~l~De~~-----~~I~~t~~~~~~~----~f~~~l~eG~vy~i~~~~V~~a~~~y~~~~~~yeI~f~ 97 (104)
T cd04474 33 EGKLFSFDLLDEDG-----GEIRATFFNDAVD----KFYDLLEVGKVYYISKGSVKVANKKFNTLKNDYEITFN 97 (104)
T ss_pred CcEEEEEEEEECCC-----CEEEEEEehHHHH----HhhcccccccEEEEeccEEeeccccCCCCCCcEEEEEC
Confidence 467778999999 7 8999999875431 22356899999999864 43332 145666554
No 175
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=61.50 E-value=11 Score=38.54 Aligned_cols=19 Identities=47% Similarity=0.962 Sum_probs=16.7
Q ss_pred CCccceehhHHHHHHHHcC
Q psy8863 407 PPASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g 425 (442)
.|..||++|+|||+.++..
T Consensus 294 ~~avGfs~~~~~l~~~l~~ 312 (397)
T TIGR00442 294 TPAVGFAIGIERLLLLLEE 312 (397)
T ss_pred CceEEeeecHHHHHHHHHh
Confidence 4788999999999998875
No 176
>PRK02801 primosomal replication protein N; Provisional
Probab=61.00 E-value=32 Score=28.11 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=32.4
Q ss_pred EEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEee--cCCc--eeEEEEeEEEEE
Q psy8863 26 IQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFK--TNTG--ELSIKVSSLKLI 76 (442)
Q Consensus 26 iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~--~~~~--~~el~~~~i~vl 76 (442)
|+||+..+.. +.+ +.|+.|+.|.|+|.+.. ++.| .+.|++++++.+
T Consensus 50 i~~va~G~~A-----e~~~~~l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQF-----QAITQSITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHH-----HHHHhhcCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 8888876532 223 46999999999999985 3333 355788877754
No 177
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=59.62 E-value=21 Score=41.70 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=46.4
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
.++|+.|.|.+ +.+.+++-++ .|+.. ..|..|.+|.|+|++... .+...+.+.++.-+.
T Consensus 965 ~maf~~leD~t-----g~~e~~vFp~-----~y~~~~~~l~~~~~~~v~G~v~~~-~~~~~~~~~~i~~l~ 1024 (1107)
T PRK06920 965 KMAFITFCDQN-----DEMEAVVFPE-----TYIHFSDKLQEGAIVLVDGTIELR-NHKLQWIVNGLYPLE 1024 (1107)
T ss_pred eEEEEEEeeCC-----CcEEEEECHH-----HHHHHHHHhccCCEEEEEEEEEec-CCcEEEEEeecccHH
Confidence 57999999999 9999999754 45444 458999999999999753 556778888775443
No 178
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=58.80 E-value=25 Score=27.87 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=32.4
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC---C-----ceeEEEEeEEEE
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN---T-----GELSIKVSSLKL 75 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~---~-----~~~el~~~~i~v 75 (442)
..++|.+..+. .-..++.++.||.|.|+|.+.... . ..+++.++++.+
T Consensus 44 ~~~~v~~~g~~----a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~ 99 (100)
T cd04496 44 DWIRVVAFGKL----AENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEF 99 (100)
T ss_pred EEEEEEEEhHH----HHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEE
Confidence 45777776542 113346799999999999997532 1 247777777764
No 179
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=58.43 E-value=24 Score=40.87 Aligned_cols=56 Identities=20% Similarity=0.443 Sum_probs=44.9
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLK 74 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~ 74 (442)
.++|+.|.|.+ +.+.+++-++ .|+.. ..|..|.+|.|+|++... .+...+.++++.
T Consensus 907 ~maf~~leD~~-----g~ie~~vFp~-----~y~~~~~~l~~~~~~~v~G~v~~~-~~~~~l~~~~i~ 963 (1034)
T PRK07279 907 QMAFLSVTDTK-----KKLDVTLFPE-----TYRQYKDELKEGKFYYLKGKIQER-DGRLQMVLQQIQ 963 (1034)
T ss_pred eEEEEEEeeCC-----CcEEEEECHH-----HHHHHHHHhccCCEEEEEEEEEec-CCeeEEEEeeee
Confidence 57999999999 9999999754 44444 458999999999999764 556777777764
No 180
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=58.14 E-value=25 Score=41.40 Aligned_cols=59 Identities=8% Similarity=0.191 Sum_probs=46.3
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
.++|+.|.|.+ +.+.+|+-++ .|+.. ..|..|.+|.|+|++... .+...+.++++.-+.
T Consensus 1022 ~maf~~leD~t-----g~~e~vvFp~-----~y~~~~~~l~~~~~~~v~g~v~~~-~~~~~~~~~~i~~l~ 1081 (1170)
T PRK07374 1022 RMAILQLEDLT-----GSCEAVVFPK-----SYERLSDHLMTDTRLLVWAKVDRR-DDRVQLIIDDCREID 1081 (1170)
T ss_pred EEEEEEEEECC-----CCEEEEECHH-----HHHHHHHHhccCCEEEEEEEEEec-CCeEEEEEeeeecHh
Confidence 47999999999 9999999754 55555 458999999999999753 356778888775443
No 181
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=57.90 E-value=28 Score=39.39 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHHHhhhCCcEEecCceeecCCC----CCCC-C-ceeeccCCCCcceeeecC--HHHHHHHHH--hccCC--ceEEEe
Q psy8863 122 SSIRHFMEKNDFMEVETPILHNKPG----GAIA-K-PFITHHNSLNMKMFLRIA--PELYLKRLI--IGGFN--KIFEIN 189 (442)
Q Consensus 122 ~~ir~ff~~~gF~EV~TPiL~~~~~----g~~~-~-~f~~~~~~~~~~~~L~~S--pql~lk~ll--~~g~~--rvf~i~ 189 (442)
+.+|++|...||.|+-|-.+++... +-.. . .......--..--+||+| |.+..-... ..+.. |+||||
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG 577 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIG 577 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeee
Confidence 4679999999999999999986411 0000 0 111111111122345555 333322111 12233 999999
Q ss_pred cccccCCC---CCCCCCccchhh------hhhc--cCCHHHHHHHHHHHHHHH
Q psy8863 190 KNFRNEGI---SPRHNPEFTMIE------FYAA--YTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 190 ~~FR~E~~---~~rHl~EFtmlE------~e~~--~~~~~dl~~~~e~li~~i 231 (442)
+||...+. ..+|++ +.+.. |... -.|+.++...++.++..+
T Consensus 578 ~V~~~~~~~~~e~~~La-~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l 629 (798)
T TIGR00472 578 KVFAKDGLGVKEQLRLA-ILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELL 629 (798)
T ss_pred cccCCCCCCcchhhEEE-EEEECCCCcccccCCCCcCChHHHHHHHHHHHHHc
Confidence 99954321 112331 11111 1100 047888888888888643
No 182
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=56.69 E-value=17 Score=29.26 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=28.5
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEE
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLI 76 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl 76 (442)
-++|++..+.. -...+.|+.||.|.|+|.+... +. ..++|.|++|.+|
T Consensus 49 ~~~v~~~g~~A----~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 49 WINVVAWGKLA----ENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEHHHH----HHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEEeeeecc----cccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 36666654421 1223569999999999998742 22 2588888888765
No 183
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=56.65 E-value=24 Score=31.58 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=36.8
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEEecc
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLITKS 79 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl~~~ 79 (442)
.-+.||+..+.. + ...+.|+.|+.|.|+|.+... +. ...||.|+++..|.+.
T Consensus 47 dfi~vv~wgk~A--e--~~~~~l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 47 DFINCVIWRQQA--E--NLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred eEEEEEEEcHHH--H--HHHHHcCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 447777776532 1 123568999999999999743 22 2588999999988754
No 184
>PRK07218 replication factor A; Provisional
Probab=56.05 E-value=47 Score=34.57 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=43.9
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
+.=..|-|.| |+|.+++..+. ..|..|++|.|.|..++.-.|.++|++.+-.-+..
T Consensus 198 v~~giigDeT-----G~Ir~tlW~~~---------~~l~~Gd~v~I~na~v~e~~G~~elnv~~~t~I~~ 253 (423)
T PRK07218 198 ILSGVLADET-----GRLPFTDWDPL---------PEIEIGASIRIEDAYVREFRGVPSVNVSEFTTVEA 253 (423)
T ss_pred EEEEEEECCC-----ceEEEEEeccc---------ccCCCCCEEEEeeeEEeccCCeEEEEECCceEEEE
Confidence 3335688888 89999888753 35899999999999888888999999985544444
No 185
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=55.31 E-value=34 Score=37.76 Aligned_cols=114 Identities=17% Similarity=0.036 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHh----cc--CCc
Q psy8863 116 KRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII----GG--FNK 184 (442)
Q Consensus 116 ~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~g--~~r 184 (442)
..+...+.+|+++...||.||-|-.|++. -+....+........-..-..||+|---.|-..++ .. --|
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~ 431 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVR 431 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCee
Confidence 44556778999999999999999999863 11111001111111111123355553222222222 11 158
Q ss_pred eEEEecccccCCCC---CCCC---------CccchhhhhhccCCHHHHHHHHHHHHHHHH
Q psy8863 185 IFEINKNFRNEGIS---PRHN---------PEFTMIEFYAAYTNYIWLMKFTEKMIKKII 232 (442)
Q Consensus 185 vf~i~~~FR~E~~~---~rHl---------~EFtmlE~e~~~~~~~dl~~~~e~li~~i~ 232 (442)
+||||.+|-.++.. .+|+ .+-|+-. .-+++.++...++.+++.+-
T Consensus 432 iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~---~~v~f~d~Kg~ve~ll~~lg 488 (650)
T COG0072 432 IFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK---RPVDFYDAKGDLEALLEALG 488 (650)
T ss_pred EEEeeeeEecCCcccchhHHHHHHhhccccccccccC---CCcCHHHHHHHHHHHHHHhC
Confidence 99999999986332 1111 3333322 23478888888888887763
No 186
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=54.83 E-value=45 Score=34.69 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=46.6
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEee-cCCceeEEEEeEEEE
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFK-TNTGELSIKVSSLKL 75 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~-~~~~~~el~~~~i~v 75 (442)
-.|..|.|.. ..|+|++.+.... .+ -.+..|+-|.|.|.+.- .+.|...|.+++++-
T Consensus 42 H~YFtLKD~~-----A~i~c~mf~~~~~-----~l~f~p~eG~~V~v~G~is~Y~~rG~YQi~~~~~~p 100 (440)
T COG1570 42 HLYFTLKDER-----AQIRCVMFKGNNR-----RLKFRPEEGMQVLVRGKISLYEPRGDYQIVAESMEP 100 (440)
T ss_pred cEEEEEccCC-----ceEEEEEEcCccc-----ccCCCccCCCEEEEEEEEEEEcCCCceEEEEecCCc
Confidence 6899999999 9999999987531 22 24899999999999975 567889999998764
No 187
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=54.79 E-value=32 Score=28.59 Aligned_cols=37 Identities=16% Similarity=0.420 Sum_probs=29.0
Q ss_pred hcCCCCCcEEEEEEEEeecC----Cc----eeEEEEeEEEEEecc
Q psy8863 43 FKNYDIGDIIGAKGTLFKTN----TG----ELSIKVSSLKLITKS 79 (442)
Q Consensus 43 ~~~L~~gs~V~V~G~v~~~~----~~----~~el~~~~i~vl~~~ 79 (442)
.+.|+.||.|.|+|.+.... .| ..||.++++.+|++.
T Consensus 62 ~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 62 TEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred HHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 35689999999999997542 12 588999999998764
No 188
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=53.32 E-value=1.1e+02 Score=25.05 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=40.0
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC-ceeEEEEeEEEEEe
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT-GELSIKVSSLKLIT 77 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~~el~~~~i~vl~ 77 (442)
+.|.||. ..+|+++..... +.. .-..|+.|++|++.-....+-. +..-|.+.+++|+.
T Consensus 42 ~~lSDG~-----~~~~amLatqln--~lv-~~g~l~~~siirl~~y~~n~v~~~k~iiiil~leVv~ 100 (101)
T PF04057_consen 42 LVLSDGV-----HSIQAMLATQLN--HLV-ESGELQKGSIIRLKQYTCNTVKNGKKIIIILDLEVVQ 100 (101)
T ss_dssp EEEESSS-----EEEEEEESGGGH--HHH-HTTSSSTT-EEEEEEEEEEESTTSSEEEEEEEEEEEE
T ss_pred EEEEChH-----HHHHHHhHHHhH--HHH-hcCCcccCCEEEEeEEEEeeccCCCEEEEEEeeEEEe
Confidence 7789999 889998865421 011 1147999999999987765433 55567888888874
No 189
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=53.17 E-value=18 Score=37.19 Aligned_cols=20 Identities=50% Similarity=0.885 Sum_probs=16.4
Q ss_pred CCccceehhHHHHHHHHcCC
Q psy8863 407 PPASGCGIGVDRLIMLLTNS 426 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g~ 426 (442)
.|..||++|+|||+.++...
T Consensus 295 ~pavGfs~~le~l~~~l~~~ 314 (412)
T PRK00037 295 TPAVGFAIGVERLLLLLEEL 314 (412)
T ss_pred CceEEEEEcHHHHHHHHHhc
Confidence 46779999999999887643
No 190
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=52.78 E-value=31 Score=31.11 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=35.8
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC----C----ceeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN----T----GELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~----~----~~~el~~~~i~vl~~~ 79 (442)
-+.|++..+. .-...+.|+.||.|.|+|.+.... . ..++|.+++|.+|+..
T Consensus 53 w~~Vv~fgk~----AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 53 WHRIVFYRRQ----AEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEEhHH----HHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 4666665542 112335699999999999997541 1 2589999999998753
No 191
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=52.67 E-value=26 Score=27.23 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=22.3
Q ss_pred cCCCCCcEEEEEEEEeecCCceeEEEEeE-EEEEe
Q psy8863 44 KNYDIGDIIGAKGTLFKTNTGELSIKVSS-LKLIT 77 (442)
Q Consensus 44 ~~L~~gs~V~V~G~v~~~~~~~~el~~~~-i~vl~ 77 (442)
..+..||.|.|+|++.+-.. ..+|.... +++++
T Consensus 43 ~~~~~Gd~V~vtG~v~ey~g-~tql~~~~~~~~~~ 76 (78)
T cd04486 43 ADVAVGDLVRVTGTVTEYYG-LTQLTAVSAIEVLG 76 (78)
T ss_pred CCCCCCCEEEEEEEEEeeCC-eEEEccCCceEEec
Confidence 57899999999999985432 34554433 44443
No 192
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=52.35 E-value=30 Score=31.59 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=35.2
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl~~~ 79 (442)
-+-|++-.+.. -...+.|+.|+.|.|+|.+... +. ..+||.|++|.+|++.
T Consensus 50 fi~v~~fg~~A----E~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 50 FIDIRLFGRTA----EIANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred EEEEEEEhHHH----HHHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 35555554321 1223569999999999999753 21 2589999999999764
No 193
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=52.27 E-value=37 Score=30.76 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=35.1
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEec
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITK 78 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~ 78 (442)
-+-|++-.+.. -...+.|+.|+.|.|+|++... +.| .+||.|+.|.+|.+
T Consensus 48 wi~~v~wgk~A----e~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~ 105 (173)
T PRK06751 48 FINCVIWRKQA----ENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEP 105 (173)
T ss_pred EEEEEEeCcHH----HHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcC
Confidence 46666665431 1233569999999999999754 222 58889999988875
No 194
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=51.97 E-value=10 Score=43.48 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=42.0
Q ss_pred ceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHc
Q psy8863 345 NITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLT 424 (442)
Q Consensus 345 ~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~ 424 (442)
.+...+|+.++|+||. |-.-|++ .|.-+ + .|..+=+.-|+||++|++-
T Consensus 126 a~glgwevw~~gmeit-----------qftyfqq------~gg~~-~--------------~~~~~eitygler~~m~~q 173 (1000)
T PRK14908 126 AWGLGWEVWLDGMEIT-----------QFTYFQQ------AGGKP-L--------------DPISGEITYGIERIAMYLQ 173 (1000)
T ss_pred ccccccEEEECCeeee-----------eeeeehh------cCCee-c--------------cccceeeeccHHHHHHHHh
Confidence 4667899999999983 2222331 12211 1 4566778999999999999
Q ss_pred CCCCccccccC
Q psy8863 425 NSKNIRDVILF 435 (442)
Q Consensus 425 g~~~Irdv~~F 435 (442)
|.+||-|+..-
T Consensus 174 ~~~~~~~~~~~ 184 (1000)
T PRK14908 174 KVNHFKDIAWN 184 (1000)
T ss_pred CCCeeeeeecC
Confidence 99999988654
No 195
>PRK12366 replication factor A; Reviewed
Probab=51.07 E-value=39 Score=37.13 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=46.2
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
+.=+.|.|.| |.|-+++..+... ..+..|++|.|.|.++..-.|.+||++.+..++.+.
T Consensus 212 ~r~~~l~D~T-----G~irvTlW~~~a~-------~~~~~g~vv~i~g~~~~~~~~~~el~~~~~~~i~~~ 270 (637)
T PRK12366 212 LKSFILKDDT-----GSIRVTLWNDLTD-------IEVNKGDIVRVKGYVKQGYRTGLEISANNIEILEKL 270 (637)
T ss_pred EEEEEEEcCC-----CcEEEEEEChhhc-------ccCCCCCEEEEEeEEecCcCCceEEEeCCceeeccc
Confidence 3447789999 8999999987531 258999999999976655558899999888777654
No 196
>PRK14699 replication factor A; Provisional
Probab=50.64 E-value=55 Score=34.71 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=47.5
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC--CceeEEEEeEEEEEeccC
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN--TGELSIKVSSLKLITKSL 80 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~--~~~~el~~~~i~vl~~~~ 80 (442)
++.=+.|-|.| |+|.+++..+.. +.+..|..|++|.|.+...+.. .+.+||.+.+..++..+.
T Consensus 203 ~v~~~~igDeT-----G~ir~tlW~~~a-----~~~~~l~~Gd~v~I~~a~vr~~~~~~~~el~~~~~s~i~~~~ 267 (484)
T PRK14699 203 KVGNLLLGDET-----GTLRVTLWDDKT-----DFLNQIEYGDTVELINAYARENAFTQKVELQVGNRSIIRKSE 267 (484)
T ss_pred EEEEEEEEcCC-----ceEEEEEECccc-----ccccccCCCCEEEEecceEeecccCCceEEEecCceEeeccc
Confidence 34436899999 999999998753 2345689999999986644433 378999998888877764
No 197
>PRK07211 replication factor A; Reviewed
Probab=50.31 E-value=54 Score=34.68 Aligned_cols=64 Identities=14% Similarity=0.304 Sum_probs=48.1
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
|++.=+.|-|.+ +.|.+++..+... .+..|..|++|.|.|.-++...+.+||.+..-..+.+|.
T Consensus 197 Gkv~sv~L~DeT-----G~IR~TlW~d~Ad-----~~~~le~G~Vv~I~~a~Vre~~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 197 GRVSNLTVGDET-----GRVRVTLWDDRAD-----LAEELDAGESVEIVDGYVRERDGSLELHVGDRGAVEEVD 260 (485)
T ss_pred eEEEEEEEEcCC-----CeEEEEEechhhh-----hhccCCCCCEEEEEeeEEEecCCcEEEEECCCceEEECC
Confidence 456568899999 9999999987531 235689999999986544555688999988766666653
No 198
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=49.92 E-value=35 Score=31.21 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=29.5
Q ss_pred hcCCCCCcEEEEEEEEeecC----C----ceeEEEEeEEEEEecc
Q psy8863 43 FKNYDIGDIIGAKGTLFKTN----T----GELSIKVSSLKLITKS 79 (442)
Q Consensus 43 ~~~L~~gs~V~V~G~v~~~~----~----~~~el~~~~i~vl~~~ 79 (442)
.+.|+.||.|.|+|.+.... . ..+||.|++|++|+..
T Consensus 67 ~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 67 GEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred HHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 35799999999999997541 1 3689999999999754
No 199
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=49.62 E-value=12 Score=35.76 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 406 MPPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 406 ~pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
-|..+=+.-|+|||+|.+-|.+||-|+..
T Consensus 150 ~pv~~EiTYGLERiamylQ~vd~v~dl~w 178 (279)
T cd00733 150 KPISVEITYGLERIAMYLQGVDNVYDIEW 178 (279)
T ss_pred cccceeeehhHHHHHHHHhCCCceecccc
Confidence 35566788999999999999999988754
No 200
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=49.00 E-value=12 Score=36.05 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=22.0
Q ss_pred CCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 407 PPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
|.++=+.-|+|||.|.+-|.+||-|++.
T Consensus 150 pv~~EITYGLERiamylQ~vdnv~dl~w 177 (284)
T PF02091_consen 150 PVSVEITYGLERIAMYLQGVDNVYDLIW 177 (284)
T ss_dssp S--EEEEEEHHHHHHHHCT-SSGGGSEE
T ss_pred ccceehhhhHHHHHHHHhCCCeeEeeee
Confidence 4556688999999999999999999764
No 201
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=48.37 E-value=45 Score=37.72 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCC----CCCCCCceeeccCCCCcceeeecC--HHHHHHHH--HhccC--CceEEE
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKP----GGAIAKPFITHHNSLNMKMFLRIA--PELYLKRL--IIGGF--NKIFEI 188 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~----~g~~~~~f~~~~~~~~~~~~L~~S--pql~lk~l--l~~g~--~rvf~i 188 (442)
.+.+.+|++|...||.|+-|-.+++.. -+-..........--..--+||+| |.+..-.. ...+. -|+|||
T Consensus 491 ~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEi 570 (791)
T PRK00629 491 RLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEI 570 (791)
T ss_pred HHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 345678999999999999999998631 010001111111111122345655 33322111 11233 389999
Q ss_pred ecccccCCC---CCCCCCccchhh------hhh-ccCCHHHHHHHHHHHHHHH
Q psy8863 189 NKNFRNEGI---SPRHNPEFTMIE------FYA-AYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 189 ~~~FR~E~~---~~rHl~EFtmlE------~e~-~~~~~~dl~~~~e~li~~i 231 (442)
|+||..... ..+|+. +.+.. |.. .-.|+.++...++.++..+
T Consensus 571 G~Vf~~~~~~~~e~~~la-~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l 622 (791)
T PRK00629 571 GRVFLPDGDLPREPEHLA-GVLTGNRVEESWGGKRPVDFFDLKGDVEALLEAL 622 (791)
T ss_pred eeeeCCCCCCCcchhEEE-EEEECCCccccccccCCCCHHHHHHHHHHHHHHc
Confidence 999965210 112221 00110 000 1147888888888888644
No 202
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=48.20 E-value=13 Score=35.63 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.1
Q ss_pred CCCccceehhHHHHHHHHcCCCCccccccC
Q psy8863 406 MPPASGCGIGVDRLIMLLTNSKNIRDVILF 435 (442)
Q Consensus 406 ~pp~~G~giGieRL~m~l~g~~~Irdv~~F 435 (442)
-|..+=+.-|+|||+|.+-|.+||-|+..-
T Consensus 154 ~pv~~EITYGLERiamylQ~vd~v~dl~w~ 183 (283)
T PRK09348 154 KPVTGEITYGLERLAMYLQGVDNVYDLVWN 183 (283)
T ss_pred cccceeeehhHHHHHHHHhCCCceeeeecC
Confidence 355667889999999999999999987643
No 203
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=47.74 E-value=20 Score=36.58 Aligned_cols=15 Identities=53% Similarity=0.731 Sum_probs=12.6
Q ss_pred CccceehhHHHHHHH
Q psy8863 408 PASGCGIGVDRLIML 422 (442)
Q Consensus 408 p~~G~giGieRL~m~ 422 (442)
|..||++|+|||+.+
T Consensus 356 pAvGfai~~drl~~~ 370 (373)
T PRK12295 356 PAVGFSIWLDRLAAL 370 (373)
T ss_pred CeeEEEEcHHHHHhh
Confidence 678999999998643
No 204
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=47.52 E-value=49 Score=36.90 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecC--HHHHHHHHH--hcc--CCceEEEecc
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIA--PELYLKRLI--IGG--FNKIFEINKN 191 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~S--pql~lk~ll--~~g--~~rvf~i~~~ 191 (442)
..+.+.+|+.|...||.|+-|-.+++.... ..........--..-.+||+| |.+..-... ..+ --|+||||+|
T Consensus 401 ~~~~~~ir~~L~~~Gf~Evitysf~s~~~~-~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~V 479 (704)
T CHL00192 401 YNTRDKIRSYLRNLGLTELIHYSLVKQESF-SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHV 479 (704)
T ss_pred HHHHHHHHHHHHhCCCceEecccccChhhc-CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeee
Confidence 345666899999999999999999864211 111122111111223446665 333322111 111 2379999999
Q ss_pred cccCCCC---CCCCCccchhh------hhh--ccCCHHHHHHHHHHHHHHH
Q psy8863 192 FRNEGIS---PRHNPEFTMIE------FYA--AYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 192 FR~E~~~---~rHl~EFtmlE------~e~--~~~~~~dl~~~~e~li~~i 231 (442)
|-..+.. .+|+.=-..-. |.. .-.|+.|+...+|.++..+
T Consensus 480 f~~~~~~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l 530 (704)
T CHL00192 480 FNLDSSSIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKL 530 (704)
T ss_pred EcCCCccccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHC
Confidence 9442211 12221110001 111 1237888999988888644
No 205
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=46.95 E-value=69 Score=29.79 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=44.5
Q ss_pred cccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEE
Q psy8863 4 RVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLK 74 (442)
Q Consensus 4 R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~ 74 (442)
..+--.+|..|.||+ |.|-|-..+.... .-+..+.+..|-.|.|.|.++ +-.|+..|....|.
T Consensus 79 ~~~ttn~~~~iEDGT-----G~Ievr~W~~~~~--~~e~~~d~~~~~yvkV~G~lk-~F~GK~~I~~~~i~ 141 (258)
T COG5235 79 KTSTTNSMFVIEDGT-----GSIEVRFWPGNSY--EEEQCKDLEEQNYVKVNGSLK-TFNGKRSISASHIS 141 (258)
T ss_pred eecccceEEEEecCC-----ceEEEEecCCCch--HHHhccccccccEEEEeccee-eeCCeeEEehhhee
Confidence 334456789999999 9999999877532 234556788888999999887 33455566555444
No 206
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=45.66 E-value=51 Score=27.91 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=36.2
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CC-c----eeEEEEeEEEEEecc
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT-G----ELSIKVSSLKLITKS 79 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~-~----~~el~~~~i~vl~~~ 79 (442)
.-+.|++-.+.. -...+.|+.|+.|.|+|.+... +. | ..||.++++..|++.
T Consensus 44 ~w~~v~~wg~~A----e~~~~~l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 44 DWFNLEIWGKTA----QVAADYVKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred eEEEEEEehHHH----HHHHHHcCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 457777765431 1223569999999999998743 21 3 488999999998753
No 207
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.36 E-value=26 Score=26.09 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhCCcEEec
Q psy8863 115 KKRTQIISSIRHFMEKNDFMEVE 137 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~gF~EV~ 137 (442)
+.|.++++.||+||...|=++|.
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEE
Confidence 46889999999999999988775
No 208
>PRK12366 replication factor A; Reviewed
Probab=45.09 E-value=53 Score=36.15 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=44.4
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeE
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSS 72 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~ 72 (442)
|++.=++|-|.+ |.|.+++..+.. +.+..|..|+++.|.|...+.-.+.+||....
T Consensus 99 Gkv~~~~v~Det-----G~Ir~t~W~~~~-----~~~~~le~G~v~~i~~~~v~~~~~~~el~~~~ 154 (637)
T PRK12366 99 GKLANITIADNT-----GTIRLTLWNDNA-----KLLKGLKEGDVIKIENARSRKWNNDVELNSGS 154 (637)
T ss_pred cEEEEEEEEcCC-----CEEEEEEEchhh-----hhhccCCCCCEEEEeccEecccCCceEEEcCC
Confidence 567778999999 999999998753 22467999999999998776666777876643
No 209
>PRK07211 replication factor A; Reviewed
Probab=44.14 E-value=79 Score=33.47 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=43.9
Q ss_pred cCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEE
Q psy8863 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSL 73 (442)
Q Consensus 6 ~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i 73 (442)
-|++.=++|-|.+ |.|++++..+.+. .....|..|+++.|.|.+++ .-+.+||.+..+
T Consensus 89 eGkv~~v~l~DeT-----G~Ir~TlW~d~ad----~~~~~Le~GdV~~I~~~~~~-~ys~~El~i~~v 146 (485)
T PRK07211 89 DGRVINVEVADET-----GSVRVAFWDEQAV----AAEEELEVGQVLRIKGRPKD-GYNGLEVSVDKV 146 (485)
T ss_pred CcEEEEEEEEcCC-----CeEEEEEechHhH----hhhcccCCCCEEEEeceEec-cccceEEEEeeE
Confidence 4678889999999 9999999987532 23457999999999998752 223468888753
No 210
>PLN02530 histidine-tRNA ligase
Probab=43.82 E-value=32 Score=36.51 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=14.7
Q ss_pred CCccceehhHHHHHHHHc
Q psy8863 407 PPASGCGIGVDRLIMLLT 424 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~ 424 (442)
.|..|||+|++|++.++-
T Consensus 373 ~pAvGFa~g~~~l~~~l~ 390 (487)
T PLN02530 373 TPACGFGFGDAVIVELLK 390 (487)
T ss_pred CCeeEEEEhHHHHHHHHH
Confidence 378899999999887763
No 211
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=43.78 E-value=1.2e+02 Score=31.55 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=48.8
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEee-cCCceeEEEEeEEEEEe
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFK-TNTGELSIKVSSLKLIT 77 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~-~~~~~~el~~~~i~vl~ 77 (442)
++=+|.+|.|.. ..|-||+.+.... .+ -.++.|+-|.|.|.+.- .+.|.+.|.|.++...+
T Consensus 40 sGH~Yf~Lkd~~-----a~i~~~~~~~~~~-----~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~i~~~g 102 (438)
T PRK00286 40 SGHWYFTLKDEI-----AQIRCVMFKGSAR-----RLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEEIEPAG 102 (438)
T ss_pred CCeEEEEEEcCC-----cEEEEEEEcChhh-----cCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEeeeCC
Confidence 345899999999 9999999987432 12 35899999999999975 56788999999987644
No 212
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.52 E-value=57 Score=29.15 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=28.5
Q ss_pred hcCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEEecc
Q psy8863 43 FKNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLITKS 79 (442)
Q Consensus 43 ~~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl~~~ 79 (442)
.+.|+.|+.|.|+|.+... +. ..++|.|++|..|...
T Consensus 66 ~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 66 AQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred HHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 3679999999999999753 12 2588999998877654
No 213
>KOG2298|consensus
Probab=43.00 E-value=6.7 Score=40.74 Aligned_cols=28 Identities=39% Similarity=0.358 Sum_probs=23.3
Q ss_pred eEEEecccccCCCC---CCCCCccchhhhhh
Q psy8863 185 IFEINKNFRNEGIS---PRHNPEFTMIEFYA 212 (442)
Q Consensus 185 vf~i~~~FR~E~~~---~rHl~EFtmlE~e~ 212 (442)
.-+||++||||=+. --|-.||||.|+|-
T Consensus 212 ~AqiG~~fRNEISpRsGLlRvrEF~maEIEH 242 (599)
T KOG2298|consen 212 SAQIGKSFRNEISPRSGLLRVREFTMAEIEH 242 (599)
T ss_pred HHHhchHhhhccCcccCceeEEEeehHHhhc
Confidence 35899999999654 37889999999984
No 214
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=42.40 E-value=27 Score=37.44 Aligned_cols=60 Identities=22% Similarity=0.448 Sum_probs=38.4
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
++-+-..|+|++ +.+++-+-..- + ......+.+|++|.|+|.|.... |.+.|.+..++.|
T Consensus 229 ~GPTVFtltDet-----g~i~aAAFe~a-G---vRAyP~IevGdiV~ViG~V~~r~-g~lQiE~~~me~L 288 (715)
T COG1107 229 SGPTVFTLTDET-----GAIWAAAFEEA-G---VRAYPEIEVGDIVEVIGEVTRRD-GRLQIEIEAMEKL 288 (715)
T ss_pred CCCEEEEEecCC-----CceehhhhccC-C---cccCCCCCCCceEEEEEEEeecC-CcEEEeehhhHHh
Confidence 444556889999 88888764321 1 11225789999999999998543 3344444445443
No 215
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=41.78 E-value=69 Score=34.87 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhc----cCCceEEEecccc
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG----GFNKIFEINKNFR 193 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~----g~~rvf~i~~~FR 193 (442)
+++-+.+-+||.++|...|.+--|.+. + +.+.+++.|.....|..+.+ ...|+=...+|.|
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~--~-------------d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR 68 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPE--N-------------DPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLR 68 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCC--C-------------CCCeeeeccchhhhhHHhcCCCCCCCCCccccccccc
Confidence 345566778999999998875555431 1 12334444444444444321 1368889999999
Q ss_pred cCCC---C-CCCCCccchhhhhhccCCH--HHHHHHHHHHHH
Q psy8863 194 NEGI---S-PRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIK 229 (442)
Q Consensus 194 ~E~~---~-~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~ 229 (442)
.-+. + +||+.=|-|| .-++|.|| ++.+..+-+|+-
T Consensus 69 ~~Dle~VG~~rHhTfFEMl-GnfSfgdYfK~eai~~awe~lt 109 (594)
T PRK01584 69 TGDIDEVGDLSHLTFFEML-GNWSLGAYFKEESIKYSFEFLT 109 (594)
T ss_pred cccccccCCCcchhHHHhh-ccccHhhhhHHHHHHHHHHHhc
Confidence 9543 3 5999988887 45566675 666666666654
No 216
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=41.75 E-value=1.2e+02 Score=31.75 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=46.7
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEee-cCCceeEEEEeEEEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFK-TNTGELSIKVSSLKL 75 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~-~~~~~~el~~~~i~v 75 (442)
+=.|..|.|.. ..|.||+.+.... .+ -.+..|+-|.|.|.+.- .+.|.+.|.|++++-
T Consensus 35 GH~YFtLkD~~-----a~i~~vmf~~~~~-----~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~ 94 (432)
T TIGR00237 35 GHWYFTLKDEN-----AQVRCVMFRGNNN-----RLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQP 94 (432)
T ss_pred ceEEEEEEcCC-----cEEEEEEEcChhh-----CCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEecc
Confidence 45899999999 9999999987431 12 24799999999999975 566789999999875
No 217
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=41.52 E-value=57 Score=29.19 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=34.6
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl~~~ 79 (442)
-+.|++..+. .-...+.|+.||.|.|+|.+... +. ..++|.|++|.+++..
T Consensus 44 wi~v~awg~~----Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 44 WCRCNIWGNR----YDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEEhHH----HHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 3556665432 11223569999999999999753 11 2588999999998654
No 218
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=41.15 E-value=78 Score=29.86 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=37.0
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc--------eeEEEEeEEEEEecc
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG--------ELSIKVSSLKLITKS 79 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~--------~~el~~~~i~vl~~~ 79 (442)
.-+.|++..+.. +.+..|+.||.|.|.|.+... +.| ..||.+++++.+++.
T Consensus 148 d~i~~v~wg~~A-----e~~~~l~KG~~V~V~GrL~sr~y~~k~g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 148 DYIPCIAWGRNA-----RFCKTLEVGDNIRVWGRVQSREYQKKLSEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred eEEEEEEEhHHh-----HHHhhCCCCCEEEEEEEEEecceEcCCCCccceEEEEEEEEEEEEEEcCCh
Confidence 567788776542 123469999999999999753 211 588999999988774
No 219
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=41.04 E-value=18 Score=34.80 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCccceehhHHHHHHHHcCCCCccccccC
Q psy8863 407 PPASGCGIGVDRLIMLLTNSKNIRDVILF 435 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g~~~Irdv~~F 435 (442)
|..+=+.-|+|||+|.+-|.+||-|...-
T Consensus 152 pv~~EITYGLERiaMylQ~vd~v~dl~w~ 180 (293)
T TIGR00388 152 PVSVEITYGLERLAMYIQGVENVYDLEWS 180 (293)
T ss_pred ccceeeehhHHHHHHHHhCCCeeeeeeec
Confidence 44566888999999999999999987654
No 220
>PRK15491 replication factor A; Provisional
Probab=40.80 E-value=97 Score=31.72 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=46.2
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEE-EeecC-CceeEEEEeEEEEEeccC
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGT-LFKTN-TGELSIKVSSLKLITKSL 80 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~-v~~~~-~~~~el~~~~i~vl~~~~ 80 (442)
++.=+.|-|.+ |.|.+++..+.+. .+..|..|++|.+.+. +.... .+.+||.+.+-..+.+|.
T Consensus 203 ~v~~~~l~Det-----G~Ir~t~W~~~a~-----~~~~l~~Gd~V~i~~~~~r~~~~~g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 203 RVRNITIGDET-----GKIRVTLWDGKTD-----LADKLENGDSVEIINGYARTNNYSQEVEIQIGNHGSLRKTD 267 (374)
T ss_pred EEEEEEEECCC-----CeEEEEEecchhc-----ccccCCCCCEEEEEeceEEEeccCCCEEEEeCCCceEEECC
Confidence 45458899999 9999999987531 2356899999999764 54332 478999987666676764
No 221
>KOG3108|consensus
Probab=40.66 E-value=1.2e+02 Score=29.45 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=44.9
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
..-++.+|-|++ +.|=|.......- .-..+..|..|..|+|.|.+. +..|..+|.+.+|+-+-
T Consensus 84 ~t~i~y~I~D~t-----g~id~r~W~~~~~--~~~e~~~l~~~~yVkv~G~Lk-~f~Gk~sl~~fkI~pv~ 146 (265)
T KOG3108|consen 84 ATNITYEIEDGT-----GQIDVRQWFHDNA--ESEEMPALETGTYVKVYGHLK-PFQGKKSLQVFKIRPVE 146 (265)
T ss_pred CcceEEEEecCc-----ccEEEEEeccccc--hhhhCcccccCcEEEeeeccc-CCCCceeEEEEeeeeee
Confidence 344678999999 8877777765421 112345899999999999987 55566778777765443
No 222
>PRK07217 replication factor A; Reviewed
Probab=40.40 E-value=1.8e+02 Score=28.92 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=48.3
Q ss_pred CCeEE-EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccCCCCC
Q psy8863 7 GKISF-IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLP 84 (442)
Q Consensus 7 g~~~F-i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~~~lP 84 (442)
+.+.. -.|-|.| |+|..++..+. ....|..|++|.+.+..+..-.|.++|.+.+...+.....+++
T Consensus 100 ~si~qvGllgDET-----G~IkfT~W~~s-------~~~~leeGd~~rI~na~v~ey~G~~~lnlg~~t~I~~~de~Ie 166 (311)
T PRK07217 100 DSIAQVGLLGDET-----GTIKFTKWAKS-------DLPELEEGKSYLLKNVVTDEYQGRFSVKLNRTTSIEELDEDIE 166 (311)
T ss_pred CceEEEEEEEcCC-----ceEEEEEccCC-------CCCcccCCCEEEEEeEEEeeECCEEEEEeCCceEEEeCCCCcc
Confidence 44444 4577777 77777777652 1245899999999999998888999999988777776554444
No 223
>PRK06386 replication factor A; Reviewed
Probab=40.04 E-value=1.6e+02 Score=30.02 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=43.6
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
.+.=+.|-|.| |+|.+++..+ .|..|++|.|.+..+..-.|.++|++.+...+.+..
T Consensus 142 ~v~sg~lgDeT-----GrIr~TlW~~-----------~l~eGd~v~i~na~v~e~~G~~el~v~~~t~I~~~~ 198 (358)
T PRK06386 142 IVYQGYIEDDT-----ARVRISSFGK-----------PLEDNRFVRIENARVSQYNGYIEISVGNKSVIKEVE 198 (358)
T ss_pred EEEEEEEEcCC-----CeEEEEEccc-----------cccCCCEEEEeeeEEEccCCeEEEEeCCeEEEEECC
Confidence 34445667777 7777776543 578999999999888877899999998887776653
No 224
>PRK08402 replication factor A; Reviewed
Probab=39.73 E-value=80 Score=32.08 Aligned_cols=57 Identities=11% Similarity=0.337 Sum_probs=41.3
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEee-cCCceeEEEEeEEE
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK-TNTGELSIKVSSLK 74 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~-~~~~~~el~~~~i~ 74 (442)
+.=+.|-|.| |.+.+++..+... +.+..|..||+|.|.|.-++ ...|.++|++.+-.
T Consensus 100 V~~i~l~DeT-----G~ir~TlW~~~a~----~~~~~l~~Gdvi~I~~a~V~e~~~G~~eLsvg~~s 157 (355)
T PRK08402 100 VASLIIYDDT-----GRARVVLWDAKVA----KYYNKINVGDVIKVIDAQVRESLSGLPELHINFRA 157 (355)
T ss_pred EEEEEEEcCC-----CeEEEEEechhhh----hhcccCCCCCEEEEECCEEeecCCCcEEEEECCCc
Confidence 4448899999 9999999987532 12356899999999864444 44676798886543
No 225
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=38.55 E-value=71 Score=25.40 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=31.5
Q ss_pred cCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEE
Q psy8863 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGT 57 (442)
Q Consensus 6 ~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~ 57 (442)
.+.=+|+.+.|.+ |.+++.+.++-.. +.-..|..|+++-.+-.
T Consensus 17 ~~~D~~v~l~DpT-----G~i~~tiH~~v~~----~y~~~l~~GavLlLk~V 59 (86)
T PF15072_consen 17 SSEDAFVVLKDPT-----GEIRGTIHRKVLE----EYGDELSPGAVLLLKDV 59 (86)
T ss_pred cCCCeEEEEECCC-----CcEEEEEeHHHHh----hcCCccccCEEEEEeee
Confidence 3445799999999 9999999876432 11256899998877653
No 226
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=37.93 E-value=24 Score=38.09 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhCCcEEecCceeecC--C----CCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccc
Q psy8863 120 IISSIRHFMEKNDFMEVETPILHNK--P----GGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFR 193 (442)
Q Consensus 120 i~~~ir~ff~~~gF~EV~TPiL~~~--~----~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR 193 (442)
+-+.+-+||.++|...|.+--|.+. | ..|+..+| +++||-.. ......|+=...+|.|
T Consensus 2 iR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~f--------kp~f~g~~--------~~p~~~r~~~~Q~CiR 65 (552)
T PF01411_consen 2 IREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQF--------KPYFLGGE--------VPPPANRLVSSQKCIR 65 (552)
T ss_dssp HHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGG--------CCCCTTSS--------S--SSSCEEEEEEEE-
T ss_pred HHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHH--------HHHhcCCC--------CCCCCCcccccceeec
Confidence 3455678999999998875555432 1 11222222 23333222 1234589999999999
Q ss_pred cC----CC-----CCCCCCccchhhhhhccCCH--HHHHHHHHHHHH
Q psy8863 194 NE----GI-----SPRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIK 229 (442)
Q Consensus 194 ~E----~~-----~~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~ 229 (442)
.- +. ++||+.=|.|| .-++|.+| ++.+..+-+++.
T Consensus 66 ~~GkhnDld~VG~t~rH~T~FEMl-Gn~sfgdYfK~eai~~awe~lt 111 (552)
T PF01411_consen 66 TGGKHNDLDNVGRTGRHHTFFEML-GNFSFGDYFKEEAIEYAWEFLT 111 (552)
T ss_dssp EETTEECGGGTTTSSS--SEEEEE-EEEEECSS-HHHHHHHHHHHHH
T ss_pred cCCCcchhhhcCCCceEeeehhhc-cccccccccHHHHHHHHHHHHH
Confidence 98 43 25999999998 55677774 566777666655
No 227
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=36.93 E-value=1.4e+02 Score=24.34 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=28.2
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
+.++|.++.. ..+..+-.|.|.|++.. ..+|.+....-++.
T Consensus 40 ~~v~v~l~~~----------~~~~~~~~vEViG~V~~----~~~I~~~~~~~~g~ 80 (101)
T cd04479 40 VNVTVELNRP----------LDLPISGYVEVIGKVSP----DLTIRVLSYIDFGD 80 (101)
T ss_pred CEEEEEeCCC----------CCcccCCEEEEEEEECC----CCeEEEEEEEECCC
Confidence 3788887654 24678889999999983 35566666555443
No 228
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=36.26 E-value=56 Score=29.35 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=28.9
Q ss_pred cCCCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEecc
Q psy8863 44 KNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITKS 79 (442)
Q Consensus 44 ~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~~ 79 (442)
+.|+.|+.|.|+|.+... +.| .+||.+++|.+|+..
T Consensus 68 ~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 68 EYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred HhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 569999999999999753 222 589999999998764
No 229
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=34.02 E-value=90 Score=27.42 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=34.6
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl~~~ 79 (442)
-+.|++-.... -...+.|+.|+-|.|+|.+... +. ..++|.+++|.++...
T Consensus 55 w~~V~~wg~~A----e~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 55 WAPVELWHRDA----EHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred EEEEEEEhHHH----HHHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 35666665421 1233569999999999999753 11 2588999999887643
No 230
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=32.77 E-value=27 Score=34.34 Aligned_cols=14 Identities=57% Similarity=0.859 Sum_probs=11.5
Q ss_pred CCCccceehhHHHH
Q psy8863 406 MPPASGCGIGVDRL 419 (442)
Q Consensus 406 ~pp~~G~giGieRL 419 (442)
-.|..||++++|||
T Consensus 298 ~~~AvGfai~ld~L 311 (311)
T PF13393_consen 298 PIPAVGFAIGLDRL 311 (311)
T ss_dssp S-EEEEEEEEHHHH
T ss_pred CCceEEEEEEeccC
Confidence 33788999999997
No 231
>PRK07218 replication factor A; Provisional
Probab=32.21 E-value=1.3e+02 Score=31.24 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=40.5
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEE
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSL 73 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i 73 (442)
.+.=+.|-|.| |+|.+++..+. .|..||+|.|.+..++.-.|.++|.+.+-
T Consensus 93 ~v~~~~igDeT-----G~Ir~tlW~~~----------~l~~Gdvv~I~na~vre~~g~~el~ig~~ 143 (423)
T PRK07218 93 VIYEGILADET-----GTISYTAWKDF----------GLSPGDTVTIGNAGVREWDGRPELNIGES 143 (423)
T ss_pred EEEEEEEECCC-----CeEEEEEECCC----------CCCCCCEEEEeccEeeccCCceEEeccCc
Confidence 45567788999 99999998742 38999999999887777777888887543
No 232
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=30.92 E-value=1.7e+02 Score=27.60 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=39.7
Q ss_pred CCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec--C-Cc----eeEEEEeEEEEEecc
Q psy8863 20 PDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT--N-TG----ELSIKVSSLKLITKS 79 (442)
Q Consensus 20 ~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~--~-~~----~~el~~~~i~vl~~~ 79 (442)
+.....|.|+++...+ +.+ .|..|+.|.|+|.+..= . .| -+|+.|.+++.+.+.
T Consensus 43 s~~~D~i~v~v~~rla-----e~~-~l~kG~~v~VeGqlrsy~~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 43 SDSKDILPVTVSERLL-----AGM-DLKVGTLVIVEGQLRSYNKFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred CCCccEEEEEEEhhhh-----hhh-cccCCCEEEEEEEEEEeccCCCCcEEEEEEEEEEEEEEccCC
Confidence 3445889999998753 222 39999999999999831 1 12 488888999988874
No 233
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=30.79 E-value=61 Score=26.33 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=32.4
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
+.|.||. ..+|+++..... ..-.-..|+.||+|.+.=....+=.+..-|.+.+++|+
T Consensus 40 i~lSDG~-----~~~~amLatqln---~~v~~g~l~~~sIirl~~y~~~~i~~k~viiIldlevl 96 (97)
T cd04477 40 ILLSDGV-----YYVQAMLATQLN---PLVESGQLQRGSIIRLKRFICNVIKGKRILIILDLEVV 96 (97)
T ss_pred EEEEChh-----HHHHHHHhhhhh---hHHhcCCccCCcEEEECeEEEEEecCcEEEEEEeeEEe
Confidence 5567777 666776653321 11111468999999996443322123335666677765
No 234
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=30.60 E-value=81 Score=27.03 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=28.3
Q ss_pred hcCCCCCcEEEEEEEEeec---CC----ceeEEEEeEEEEEec
Q psy8863 43 FKNYDIGDIIGAKGTLFKT---NT----GELSIKVSSLKLITK 78 (442)
Q Consensus 43 ~~~L~~gs~V~V~G~v~~~---~~----~~~el~~~~i~vl~~ 78 (442)
.+.|+.||.|.|+|.+... +. ...||.++++.+|..
T Consensus 62 ~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 62 ASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred HHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 3569999999999998753 11 258999999998864
No 235
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=29.61 E-value=1.3e+02 Score=27.25 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=28.2
Q ss_pred cCCCCCcEEEEEEEEeec---CC----ceeEEEEe---EEEEEecc
Q psy8863 44 KNYDIGDIIGAKGTLFKT---NT----GELSIKVS---SLKLITKS 79 (442)
Q Consensus 44 ~~L~~gs~V~V~G~v~~~---~~----~~~el~~~---~i~vl~~~ 79 (442)
+.|+.||.|.|+|.+... .. ..+||.|+ ++.+|++.
T Consensus 70 ~~L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~ 115 (175)
T PRK13732 70 EYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRA 115 (175)
T ss_pred HhcCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCC
Confidence 569999999999998743 11 25888888 88988875
No 236
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=29.43 E-value=26 Score=37.82 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.8
Q ss_pred ccceehhHHHHHHHHcC
Q psy8863 409 ASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 409 ~~G~giGieRL~m~l~g 425 (442)
|.||++|+|||++++..
T Consensus 442 ~~Gfa~gieRli~~l~e 458 (563)
T TIGR00418 442 HRAILGSIERFIAILLE 458 (563)
T ss_pred EeeccCcHHHHHHHHHH
Confidence 56999999999998854
No 237
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.63 E-value=76 Score=29.02 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=35.6
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--c--eeEEEEeEEEE
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--G--ELSIKVSSLKL 75 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~--~~el~~~~i~v 75 (442)
+-+.|++ |.+=|.+.. ..++..+.++.+..+|.|.|+|++..-.+ | -++|.++.+..
T Consensus 69 ~rVvDpT-----GsF~Vyag~--yqPEa~a~l~~ve~~~~VaViGKi~~y~~d~g~~~~siRpE~vs~ 129 (196)
T COG3390 69 IRVVDPT-----GSFYVYAGQ--YQPEAKAFLEDVEVPDLVAVIGKIRTYRTDEGVVLFSIRPELVSK 129 (196)
T ss_pred EEEecCC-----ceEEEEcCC--CChHHHHHHHhccCCceEEEecccceeecCCCceEEEechhhhhh
Confidence 4456666 666554332 23456677889999999999999864322 3 34455554433
No 238
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=28.58 E-value=1.3e+02 Score=27.34 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=27.0
Q ss_pred hcCCCCCcEEEEEEEEeecC----C----ceeEEEEe---EEEEEecc
Q psy8863 43 FKNYDIGDIIGAKGTLFKTN----T----GELSIKVS---SLKLITKS 79 (442)
Q Consensus 43 ~~~L~~gs~V~V~G~v~~~~----~----~~~el~~~---~i~vl~~~ 79 (442)
.+.|+.||.|.|+|.+.... . ..+||.+. ++++|++.
T Consensus 69 ~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 69 GEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred HHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 35699999999999997532 1 24777766 67877653
No 239
>PRK07080 hypothetical protein; Validated
Probab=26.30 E-value=33 Score=34.10 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=18.1
Q ss_pred CCCCccce-ehhHHHHHHHHcCCC
Q psy8863 405 GMPPASGC-GIGVDRLIMLLTNSK 427 (442)
Q Consensus 405 G~pp~~G~-giGieRL~m~l~g~~ 427 (442)
|-|=|+|| |.|+||++..|+...
T Consensus 276 g~~ahTgCvGFGlER~a~All~~h 299 (317)
T PRK07080 276 GAVAHTGCVGFGLERLALALFRHH 299 (317)
T ss_pred CCEeEEeeeecCHHHHHHHHHHHh
Confidence 56667776 999999999887543
No 240
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=25.33 E-value=3.5e+02 Score=22.86 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=38.4
Q ss_pred cccccCCeEEEEEecCCCCC----CCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec-CCceeEEEEeEEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPD----SNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT-NTGELSIKVSSLK 74 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~----~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~-~~~~~el~~~~i~ 74 (442)
++|..|.+.-.++....-.. ..+.-|+.++-+.+++ -..+.||.+.+-|-+... +.++..|+|-=++
T Consensus 23 svR~~GrL~~yD~~~~~a~l~~~~~~~~~~l~V~t~~l~~------~~~~~gslyq~iGEl~~~~~~~~~~L~ARV~r 94 (118)
T PF15490_consen 23 SVRTFGRLQSYDVATSRATLTAQHESDQHSLKVDTKLLEP------FQARVGSLYQFIGELEHQPQDGGIVLKARVLR 94 (118)
T ss_pred eEEEEEEEEEEeccCCEEEEEeeccCCCcEEEEEeeEccc------cccCCCCEEEEEEEEEEEcCCCcEEEEEEEEE
Confidence 57888887766654444000 0122355555443321 134799999999998876 4556655554333
No 241
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=24.81 E-value=2.5e+02 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=22.7
Q ss_pred cCCCCCcEEEEEEEEeecC--Cc--eeEEEEeEEEE
Q psy8863 44 KNYDIGDIIGAKGTLFKTN--TG--ELSIKVSSLKL 75 (442)
Q Consensus 44 ~~L~~gs~V~V~G~v~~~~--~~--~~el~~~~i~v 75 (442)
.+++.|+.|.|.|.+...+ .+ .+-|+++.+..
T Consensus 66 ~~i~~Gs~i~v~GFla~~~~~sg~~~lvlha~qi~~ 101 (103)
T COG2965 66 QSITVGSYILVVGFLACHKRRSGLSKLVLHAEQIEF 101 (103)
T ss_pred hccccccEEEEEEEEEeecccCCccEEEEEeeEEEe
Confidence 4699999999999986433 23 45566666554
No 242
>KOG1637|consensus
Probab=24.39 E-value=61 Score=33.90 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC----CCceeecc--CCCC-cceeeecCHHHH-----HHHHH
Q psy8863 115 KKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI----AKPFITHH--NSLN-MKMFLRIAPELY-----LKRLI 178 (442)
Q Consensus 115 ~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~----~~~f~~~~--~~~~-~~~~L~~Spql~-----lk~ll 178 (442)
++..+++..||.-...+||.||-||.|-.+ ..|+- -..|.+.. +.|+ +|+- .|+.- ..+-.
T Consensus 193 ~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMN---CPgHcLmf~~r~rS~ 269 (560)
T KOG1637|consen 193 RIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMN---CPGHCLMFAHRDRSY 269 (560)
T ss_pred hHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccC---CCccccccccCCccH
Confidence 678899999999999999999999999754 33321 12232211 0000 0000 01000 00000
Q ss_pred hccCCceEEEecccccCCCC----CCCCCccchhhhhhccC--CHHHHHHHHHHHHHHHHHHhhc
Q psy8863 179 IGGFNKIFEINKNFRNEGIS----PRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKIIMDCIG 237 (442)
Q Consensus 179 ~~g~~rvf~i~~~FR~E~~~----~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i~~~~~~ 237 (442)
..-.-|.=.+|..-|||-|+ -+|+.+|.|=|.-..-. ..++-+.-+-++++++.. +.+
T Consensus 270 reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~-~fg 333 (560)
T KOG1637|consen 270 RELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYG-VFG 333 (560)
T ss_pred hhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHHHH-hcc
Confidence 01123666789999999876 38999999988765432 134444444455555554 444
No 243
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=24.21 E-value=1.2e+02 Score=27.72 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=28.3
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEEEEeEE
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSL 73 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i 73 (442)
-+.|++-.+.. -...+.|+.||.|.|+|++... +.+ .+||.|++|
T Consensus 54 fi~V~~Wg~~A----e~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 54 FLRCSIWRQAA----ENVAESLTKGMRVIVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred EEEEEEecHHH----HHHHHhcCCCCEEEEEEEEEcCceECCCCCEEEEEEEEEEEc
Confidence 46677665421 1233579999999999999753 122 366666643
No 244
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.99 E-value=1.7e+02 Score=32.02 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred cCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEE-EEEeecC------CceeEEEEeEEEEEec
Q psy8863 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAK-GTLFKTN------TGELSIKVSSLKLITK 78 (442)
Q Consensus 6 ~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~-G~v~~~~------~~~~el~~~~i~vl~~ 78 (442)
.|++.-++|.|.+ +.|++.+..+.+. .....|..|+++.|+ |.|.... .++.||...+-+++.+
T Consensus 214 egkvfsv~L~Deg-----g~Irat~f~~~~d----kf~~~l~eG~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~ 284 (608)
T TIGR00617 214 EGKLFNVELLDES-----GEIRATAFNEQAD----KFYDIIQEGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEE 284 (608)
T ss_pred CceeeEEEEecCC-----CeEEEEECchHHH----HHhhhcccCCEEEECceEEEEccccccCCCCCEEEEECCCeEEEE
Confidence 3667778899988 9999999876431 223568999999996 4565432 2578998888777777
Q ss_pred cC
Q psy8863 79 SL 80 (442)
Q Consensus 79 ~~ 80 (442)
|.
T Consensus 285 ~~ 286 (608)
T TIGR00617 285 CE 286 (608)
T ss_pred CC
Confidence 64
No 245
>KOG2851|consensus
Probab=23.76 E-value=78 Score=31.91 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=39.9
Q ss_pred eecCHHHHHHHHHhccCCceEEEecccccCCCCCC--CCCccchhhhhhccC----CHHHH
Q psy8863 166 LRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPR--HNPEFTMIEFYAAYT----NYIWL 220 (442)
Q Consensus 166 L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~r--Hl~EFtmlE~e~~~~----~~~dl 220 (442)
+.-..|--++..+.+-..--+.||++|+.++.+.+ ...+|+-+|=|.+|- ||+++
T Consensus 62 ~sFn~~~~~~k~i~s~nP~KiDIGaVY~~~P~~~~t~~~s~~~~vekELVFDIDmTDYD~V 122 (412)
T KOG2851|consen 62 LSFNNASEFEKEISSTNPDKIDIGAVYSHRPRNHKTLRKSDFQAVEKELVFDIDMTDYDDV 122 (412)
T ss_pred eccCCHHHHHHHHhhcCCcceeecccccCCccccccccccccceeeeeeEEecccccChHH
Confidence 44444444444455666667899999999987643 689999999999984 57753
No 246
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=23.15 E-value=1.2e+02 Score=21.45 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCCCc
Q psy8863 396 TDYIHALEYGMPPA 409 (442)
Q Consensus 396 ~~yl~~~k~G~pp~ 409 (442)
.|...+.++|.||.
T Consensus 22 Pwl~~M~~~G~PP~ 35 (48)
T PF04046_consen 22 PWLYRMRRLGYPPG 35 (48)
T ss_pred hHHHHHHhcCCCCC
Confidence 69999999999984
No 247
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=21.15 E-value=52 Score=35.75 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=24.6
Q ss_pred CccceehhHHHHHHHHcCCCCccccccC
Q psy8863 408 PASGCGIGVDRLIMLLTNSKNIRDVILF 435 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~~~Irdv~~F 435 (442)
+|-.-|+|+|||++.+-|..++=|+=+|
T Consensus 224 k~IDTGmGLERl~~vlqg~~s~ydtdlf 251 (594)
T PRK01584 224 KCVDTGMGIERTIAFLQGKSSVYDTEAF 251 (594)
T ss_pred CceeCCcCHHHHHHHHcCCCCccchhhh
Confidence 6778999999999999999999888444
No 248
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=20.65 E-value=1.8e+02 Score=24.94 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=31.1
Q ss_pred chhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 37 KNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 37 ~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
...|..+..|+.||.|.|+ +..+..+-+|...+++.|..
T Consensus 55 ~~~F~~L~~l~~GD~i~v~-----~~~~~~~Y~V~~~~~v~~~d 93 (136)
T TIGR01076 55 ATMFTNLDKLKKGDMLYLH-----VGNEVLTYQVTSTKIVEPTD 93 (136)
T ss_pred CCccCCHHHCCCCCEEEEE-----ECCcEEEEEEEEEEEECcCc
Confidence 4589999999999999775 34467788888888888764
No 249
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=20.04 E-value=47 Score=15.88 Aligned_cols=7 Identities=43% Similarity=0.975 Sum_probs=4.2
Q ss_pred cccCCCC
Q psy8863 432 VILFPHL 438 (442)
Q Consensus 432 v~~FPr~ 438 (442)
.|+|||.
T Consensus 5 lI~fpR~ 11 (11)
T PF08259_consen 5 LIPFPRV 11 (11)
T ss_pred ccccCCC
Confidence 4667763
No 250
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=20.02 E-value=1.7e+02 Score=24.96 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=21.5
Q ss_pred EEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec
Q psy8863 10 SFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT 61 (442)
Q Consensus 10 ~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~ 61 (442)
.++...+.. ....++|.++.+.. .......|+.|+.|.|+|...-.
T Consensus 87 ~~~~~~~~~---~~~~v~~~~~~~~~---~~~~~~~l~~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 87 YVVLLGTEN---GFAGVQCYFSNDQE---KRASVAKLKKGQKVTIKGICTGY 132 (144)
T ss_dssp EEEEEE-TT----S-S--EEEEEEGG---GHHHHHH--TTSEEEEEEE----
T ss_pred EEEEccCCC---CceeEEEEEccchh---hhhhHhcCCCCCEEEEEEEEEee
Confidence 344444434 33667777775531 12233459999999999987643
Done!