Query psy8863
Match_columns 442
No_of_seqs 179 out of 1399
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:17:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ex5_A Lysine--tRNA ligase; st 100.0 8E-114 3E-118 894.5 42.9 433 1-441 96-528 (529)
2 1e1o_A Lysyl-tRNA synthetase, 100.0 4E-111 1E-115 875.2 45.1 428 1-441 74-503 (504)
3 3a74_A Lysyl-tRNA synthetase; 100.0 9E-110 3E-114 863.6 42.9 427 1-441 66-493 (493)
4 3bju_A Lysyl-tRNA synthetase; 100.0 8E-109 3E-113 861.8 44.9 428 1-441 65-508 (521)
5 3nem_A Aspartyl-tRNA synthetas 100.0 3.6E-98 1E-102 766.2 38.5 399 1-441 26-435 (438)
6 1l0w_A Aspartyl-tRNA synthetas 100.0 1.3E-96 4E-101 777.6 40.1 412 2-441 27-554 (580)
7 1c0a_A Aspartyl tRNA synthetas 100.0 8.9E-96 3E-100 773.5 38.2 411 2-441 26-560 (585)
8 3i7f_A Aspartyl-tRNA synthetas 100.0 5.2E-96 2E-100 761.7 35.5 397 2-440 73-544 (548)
9 3m4p_A Ehasnrs, asparaginyl-tR 100.0 2.6E-96 9E-101 756.0 28.9 396 1-440 40-452 (456)
10 1eov_A ASPRS, aspartyl-tRNA sy 100.0 5.3E-93 1.8E-97 738.3 38.5 402 1-441 46-484 (487)
11 2xgt_A Asparaginyl-tRNA synthe 100.0 6.8E-94 2.3E-98 736.6 29.6 393 1-441 21-432 (435)
12 1wyd_A Hypothetical aspartyl-t 100.0 7.2E-93 2.5E-97 726.6 36.0 392 1-441 26-426 (429)
13 1x54_A Asparaginyl-tRNA synthe 100.0 4E-92 1.4E-96 722.7 29.4 393 1-441 26-431 (434)
14 1n9w_A Aspartyl-tRNA synthetas 100.0 1.1E-91 3.9E-96 716.4 31.7 385 1-441 23-419 (422)
15 4ah6_A Aspartate--tRNA ligase, 100.0 3.1E-85 1.1E-89 689.1 37.2 408 2-441 35-571 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 6.4E-81 2.2E-85 621.0 29.1 305 110-439 32-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 2.4E-66 8.2E-71 507.6 25.6 275 98-441 1-290 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 3.2E-26 1.1E-30 223.6 10.3 166 61-230 22-205 (290)
19 12as_A Asparagine synthetase; 99.9 9.3E-23 3.2E-27 194.6 21.8 272 114-434 5-315 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.8 1.2E-19 4E-24 176.4 13.1 113 117-229 73-200 (288)
21 1b7y_A Phers, protein (phenyla 99.7 1.1E-16 3.8E-21 158.9 17.1 112 118-231 104-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.6 5.5E-16 1.9E-20 151.2 8.9 113 118-231 56-183 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.5 6.6E-15 2.3E-19 144.4 8.7 112 119-232 111-235 (327)
24 3l4g_A Phenylalanyl-tRNA synth 99.5 4.5E-14 1.5E-18 145.4 9.9 112 118-230 228-397 (508)
25 3cmq_A Phenylalanyl-tRNA synth 99.2 1.4E-10 4.8E-15 117.7 12.9 95 119-214 52-164 (415)
26 2du7_A O-phosphoseryl-tRNA syn 98.8 1.8E-08 6E-13 104.4 13.1 68 164-231 193-269 (549)
27 3lc0_A Histidyl-tRNA synthetas 98.8 3.9E-08 1.3E-12 101.3 14.7 102 114-216 43-157 (456)
28 2du3_A O-phosphoseryl-tRNA syn 98.8 2E-08 6.8E-13 104.0 11.7 48 183-230 206-256 (534)
29 2odr_B Phosphoseryl-tRNA synth 98.7 5.8E-08 2E-12 101.3 10.9 68 164-231 200-276 (648)
30 2odr_A Phosphoseryl-tRNA synth 98.7 6.2E-08 2.1E-12 101.2 10.9 68 164-231 200-276 (665)
31 2odr_D Phosphoseryl-tRNA synth 98.7 6.3E-08 2.2E-12 101.2 10.9 68 164-231 200-276 (685)
32 2odr_C Phosphoseryl-tRNA synth 98.7 7.3E-08 2.5E-12 101.0 10.8 68 164-231 200-276 (701)
33 1z7m_A ATP phosphoribosyltrans 98.3 3.1E-06 1.1E-10 83.9 12.3 103 114-217 36-152 (344)
34 1evl_A Threonyl-tRNA synthetas 98.3 5.6E-07 1.9E-11 91.2 5.9 113 113-228 29-160 (401)
35 2i4l_A Proline-tRNA ligase; al 98.3 1.1E-06 3.6E-11 90.7 7.5 114 113-227 66-197 (458)
36 1qe0_A Histidyl-tRNA synthetas 98.3 9.7E-07 3.3E-11 89.9 6.9 103 113-216 15-135 (420)
37 1wu7_A Histidyl-tRNA synthetas 98.2 4.7E-06 1.6E-10 85.2 10.6 103 113-216 19-133 (434)
38 3vbb_A Seryl-tRNA synthetase, 98.2 2.8E-06 9.6E-11 87.9 8.4 118 112-229 199-346 (522)
39 3rac_A Histidine-tRNA ligase; 98.2 5.1E-06 1.7E-10 83.3 10.2 102 114-216 37-157 (373)
40 3od1_A ATP phosphoribosyltrans 98.2 5.3E-06 1.8E-10 83.9 9.7 102 114-216 24-137 (400)
41 1hc7_A Prolyl-tRNA synthetase; 98.1 4.5E-06 1.6E-10 86.3 9.2 115 113-227 43-178 (477)
42 1h4v_B Histidyl-tRNA synthetas 98.1 7E-06 2.4E-10 83.5 10.3 103 113-216 16-135 (421)
43 1htt_A Histidyl-tRNA synthetas 98.1 6E-06 2E-10 84.1 9.3 103 113-216 17-135 (423)
44 2dq3_A Seryl-tRNA synthetase; 98.1 3.1E-06 1.1E-10 86.2 7.0 115 113-229 171-304 (425)
45 2j3l_A Prolyl-tRNA synthetase; 98.1 6.2E-06 2.1E-10 87.3 9.4 121 113-234 46-187 (572)
46 3qne_A Seryl-tRNA synthetase, 98.1 9.7E-06 3.3E-10 83.2 10.2 116 112-230 183-322 (485)
47 4e51_A Histidine--tRNA ligase; 98.1 5.4E-06 1.9E-10 85.6 8.0 103 113-216 45-164 (467)
48 1nyr_A Threonyl-tRNA synthetas 98.1 4.1E-06 1.4E-10 89.9 6.8 102 112-214 269-390 (645)
49 3net_A Histidyl-tRNA synthetas 98.0 6E-06 2.1E-10 85.2 7.5 116 114-230 26-174 (465)
50 4hvc_A Bifunctional glutamate/ 98.0 1.1E-05 3.7E-10 84.0 9.3 116 113-229 60-198 (519)
51 1nj8_A Proline-tRNA synthetase 98.0 1.2E-05 4.1E-10 82.8 9.5 117 113-229 37-176 (459)
52 2dq0_A Seryl-tRNA synthetase; 98.0 7.1E-06 2.4E-10 84.2 6.7 116 113-230 192-326 (455)
53 1qf6_A THRRS, threonyl-tRNA sy 98.0 6E-06 2.1E-10 88.5 6.0 113 113-228 270-401 (642)
54 4g84_A Histidine--tRNA ligase, 98.0 2.9E-05 9.9E-10 79.9 10.8 102 113-215 27-139 (464)
55 3uh0_A Threonyl-tRNA synthetas 98.0 6.5E-06 2.2E-10 84.7 5.8 118 113-231 63-201 (460)
56 1nj1_A PROR, proline-tRNA synt 97.9 6.6E-06 2.3E-10 85.6 5.7 117 113-230 70-209 (501)
57 1ses_A Seryl-tRNA synthetase; 97.9 1.6E-05 5.4E-10 80.9 8.2 126 99-230 156-301 (421)
58 4g85_A Histidine-tRNA ligase, 97.9 2.2E-05 7.7E-10 82.0 9.6 102 113-215 80-192 (517)
59 3ial_A Prolyl-tRNA synthetase; 97.9 1E-05 3.5E-10 84.1 6.0 118 113-230 54-193 (518)
60 3a32_A Probable threonyl-tRNA 97.9 2.5E-05 8.4E-10 80.8 8.4 101 113-215 48-170 (471)
61 1wle_A Seryl-tRNA synthetase; 97.8 6.6E-05 2.3E-09 77.7 10.3 118 113-231 218-358 (501)
62 2cja_A Seryl-tRNA synthetase; 97.7 1.2E-05 4E-10 83.6 2.2 121 113-235 230-400 (522)
63 3lss_A Seryl-tRNA synthetase; 97.6 0.00011 3.9E-09 75.3 8.8 116 112-230 206-345 (484)
64 3err_A Fusion protein of micro 97.6 0.00012 4.2E-09 76.3 9.2 116 112-231 273-411 (536)
65 2rhq_B Phenylalanyl-tRNA synth 97.6 0.00049 1.7E-08 75.3 13.6 96 118-214 496-602 (795)
66 1ati_A Glycyl-tRNA synthetase; 97.6 7E-05 2.4E-09 78.0 6.2 47 183-230 210-259 (505)
67 1usy_A ATP phosphoribosyltrans 97.4 0.00019 6.4E-09 68.8 6.4 88 121-216 7-101 (275)
68 3mf2_A BLL0957 protein; aminoa 96.9 0.0007 2.4E-08 66.2 4.6 118 112-231 62-217 (346)
69 2zt5_A Glycyl-tRNA synthetase; 96.5 0.0033 1.1E-07 67.7 7.3 32 113-144 100-132 (693)
70 3ikl_A DNA polymerase subunit 96.5 0.0045 1.5E-07 63.1 7.7 105 114-229 104-225 (459)
71 3l4g_B Phenylalanyl-tRNA synth 96.0 0.018 6E-07 60.9 9.2 111 119-230 395-521 (589)
72 1g5h_A Mitochondrial DNA polym 95.9 0.0082 2.8E-07 61.4 5.8 117 113-230 61-216 (454)
73 3ig2_A Phenylalanyl-tRNA synth 95.6 0.022 7.4E-07 52.1 7.0 113 119-231 8-151 (213)
74 3ica_A Phenylalanyl-tRNA synth 95.4 0.035 1.2E-06 50.8 7.5 114 118-231 7-151 (213)
75 3dm3_A Replication factor A; p 94.6 0.17 5.9E-06 40.7 8.8 60 9-80 42-101 (105)
76 2k50_A Replication factor A re 93.8 0.12 4.3E-06 42.0 6.5 63 7-79 42-105 (115)
77 3kf6_A Protein STN1; OB fold, 93.2 0.32 1.1E-05 42.3 8.3 69 3-78 59-128 (159)
78 1b7y_B Phers, protein (phenyla 92.8 0.37 1.3E-05 52.5 10.0 107 117-231 491-620 (785)
79 3e0e_A Replication protein A; 92.6 0.53 1.8E-05 37.1 8.3 58 9-79 39-96 (97)
80 3kdf_D Replication protein A 3 91.3 0.96 3.3E-05 37.7 8.8 67 4-78 44-111 (132)
81 4gop_B Putative uncharacterize 90.1 1.2 4.2E-05 37.3 8.5 67 5-78 50-116 (136)
82 1nnx_A Protein YGIW; structura 89.4 0.83 2.8E-05 36.9 6.5 54 12-77 55-108 (109)
83 2k75_A Uncharacterized protein 85.1 2.7 9.3E-05 33.6 7.2 60 9-85 39-99 (106)
84 3au7_A TIAS, putative uncharac 85.0 2.6 9E-05 41.9 8.5 64 4-79 299-362 (402)
85 3net_A Histidyl-tRNA synthetas 84.0 0.23 7.9E-06 50.8 0.4 19 407-425 342-360 (465)
86 3fhw_A Primosomal replication 83.1 3.2 0.00011 33.8 6.9 50 26-80 49-100 (115)
87 2kbn_A Conserved protein; nucl 80.0 5.7 0.0002 31.8 7.3 58 10-79 37-94 (109)
88 1o7i_A SSB, SSO2364, single st 79.4 6 0.0002 32.1 7.4 61 5-79 33-96 (119)
89 2pi2_A Replication protein A 3 78.7 8 0.00027 36.2 9.0 64 7-78 87-151 (270)
90 3kf8_A Protein STN1; OB fold; 77.8 6.8 0.00023 35.6 7.8 69 8-79 110-185 (220)
91 1z7m_A ATP phosphoribosyltrans 77.0 1.9 6.7E-05 42.0 4.3 18 407-424 318-335 (344)
92 3od1_A ATP phosphoribosyltrans 76.5 1.8 6E-05 43.3 3.9 47 349-426 282-330 (400)
93 3pco_B Phenylalanyl-tRNA synth 74.0 3.4 0.00012 44.9 5.7 112 120-231 494-628 (795)
94 3k8a_A Putative primosomal rep 70.6 7.8 0.00027 30.8 5.6 45 26-76 55-101 (103)
95 1txy_A Primosomal replication 66.6 16 0.00056 28.7 6.8 49 26-78 50-102 (104)
96 4e51_A Histidine--tRNA ligase; 63.8 6 0.0002 40.2 4.6 19 407-425 327-345 (467)
97 1ynx_A Replication factor-A pr 62.2 5.7 0.00019 32.0 3.3 66 6-80 38-110 (114)
98 3vdy_A SSB, single-stranded DN 60.5 10 0.00034 30.5 4.6 51 25-79 51-109 (116)
99 2b29_A Replication protein A 7 59.1 49 0.0017 26.9 8.6 60 12-79 47-108 (123)
100 1qe0_A Histidyl-tRNA synthetas 58.9 4.7 0.00016 40.1 2.8 16 408-423 302-317 (420)
101 3tqy_A Single-stranded DNA-bin 54.5 11 0.00038 32.2 4.1 50 25-78 57-114 (158)
102 3en2_A Probable primosomal rep 53.4 28 0.00096 27.4 5.9 44 26-74 50-95 (101)
103 1wjj_A Hypothetical protein F2 50.9 36 0.0012 28.7 6.6 57 7-76 61-117 (145)
104 1z9f_A Single-strand binding p 50.9 21 0.00073 30.3 5.2 51 25-79 64-122 (153)
105 2vw9_A Single-stranded DNA bin 50.6 12 0.00041 31.0 3.6 50 25-78 50-107 (134)
106 1j5w_A Glycyl-tRNA synthetase 49.9 7.4 0.00025 36.0 2.2 29 406-434 163-191 (298)
107 3rf1_A Glycyl-tRNA synthetase 49.3 8.3 0.00028 36.0 2.4 59 344-434 145-203 (311)
108 1v1q_A Primosomal replication 49.2 60 0.0021 26.9 7.6 50 25-78 66-119 (134)
109 1jmc_A Protein (replication pr 48.6 16 0.00053 33.4 4.3 65 7-80 43-114 (246)
110 2vl6_A SSO MCM N-TER, minichro 44.9 56 0.0019 30.2 7.6 31 22-60 209-239 (268)
111 4g84_A Histidine--tRNA ligase, 43.6 7.4 0.00025 39.1 1.3 18 407-424 335-352 (464)
112 3rac_A Histidine-tRNA ligase; 43.4 9.2 0.00032 37.6 2.0 18 407-424 347-364 (373)
113 2hpi_A DNA polymerase III alph 41.8 22 0.00074 40.5 4.8 60 8-79 1064-1124(1220)
114 2i4l_A Proline-tRNA ligase; al 41.4 7 0.00024 39.5 0.8 20 406-425 329-349 (458)
115 3hy0_A Alanyl-tRNA synthetase; 41.0 48 0.0016 33.1 6.6 95 119-229 6-115 (441)
116 1yfs_A Alanyl-tRNA synthetase; 40.4 39 0.0013 34.0 5.9 96 119-230 7-117 (465)
117 3ull_A DNA binding protein; DN 40.2 29 0.001 28.5 4.3 36 44-79 84-127 (132)
118 1wu7_A Histidyl-tRNA synthetas 39.2 9.4 0.00032 38.1 1.3 19 408-426 306-324 (434)
119 1h4v_B Histidyl-tRNA synthetas 38.6 10 0.00036 37.6 1.5 19 408-426 301-319 (421)
120 2j3l_A Prolyl-tRNA synthetase; 38.5 8.3 0.00028 40.1 0.8 19 407-425 435-454 (572)
121 1htt_A Histidyl-tRNA synthetas 38.2 10 0.00034 37.7 1.3 18 408-425 300-317 (423)
122 3koj_A Uncharacterized protein 38.1 59 0.002 25.8 5.6 47 24-74 53-107 (108)
123 3f2b_A DNA-directed DNA polyme 34.1 1.5E+02 0.0051 33.1 9.9 65 7-78 37-103 (1041)
124 1se8_A Single-strand binding p 32.7 59 0.002 30.8 5.7 49 25-78 177-233 (301)
125 4g85_A Histidine-tRNA ligase, 32.5 14 0.00048 37.8 1.3 18 407-424 388-405 (517)
126 4gs3_A Single-stranded DNA-bin 32.4 1.3E+02 0.0045 23.8 6.8 48 24-77 50-106 (107)
127 1yfs_A Alanyl-tRNA synthetase; 32.2 17 0.00059 36.5 1.8 28 408-435 215-242 (465)
128 2ztg_A Alanyl-tRNA synthetase; 32.0 8.8 0.0003 41.2 -0.3 28 408-436 239-266 (739)
129 3eiv_A Single-stranded DNA-bin 30.9 81 0.0028 28.0 5.9 48 24-75 53-108 (199)
130 1qvc_A Single stranded DNA bin 30.6 29 0.001 29.0 2.8 51 24-78 53-114 (145)
131 2fxq_A Single-strand binding p 28.2 85 0.0029 28.9 5.9 51 25-79 53-110 (264)
132 4gop_C Putative uncharacterize 27.9 63 0.0021 32.2 5.2 64 7-79 38-108 (444)
133 3lgj_A Single-stranded DNA-bin 27.5 83 0.0029 27.0 5.3 52 24-79 71-135 (169)
134 3hy0_A Alanyl-tRNA synthetase; 26.9 20 0.0007 35.7 1.3 28 408-435 232-259 (441)
135 1ltl_A DNA replication initiat 26.6 91 0.0031 28.9 5.8 32 22-61 196-227 (279)
136 2zze_A Alanyl-tRNA synthetase; 26.0 16 0.00056 39.2 0.5 23 413-436 250-272 (752)
137 1se8_A Single-strand binding p 25.5 95 0.0033 29.3 5.7 51 25-79 53-112 (301)
138 2fxq_A Single-strand binding p 24.8 59 0.002 30.0 4.0 50 24-78 172-229 (264)
139 3ulp_A Single-strand binding p 22.9 1.1E+02 0.0037 24.6 4.8 50 25-78 55-119 (124)
140 3afp_A Single-stranded DNA-bin 22.8 79 0.0027 27.1 4.2 33 24-60 53-85 (168)
No 1
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.8e-114 Score=894.52 Aligned_cols=433 Identities=60% Similarity=1.074 Sum_probs=403.4
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
+++|.+||++|++|||++ +.||||++++.++++.|+.+++|+.||+|.|+|+|.++++|++||.+++++||++|.
T Consensus 96 ~~~R~~Gk~~Fi~LrD~s-----g~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~ 170 (529)
T 4ex5_A 96 MLKRVMGKASFATVQDGS-----GQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKAL 170 (529)
T ss_dssp EEEEEETTEEEEEEECSS-----CEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCS
T ss_pred EeeecCCCeEEEEEEeCC-----eeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCC
Confidence 478999999999999999 999999998766677788888999999999999999999999999999999999999
Q ss_pred CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCC
Q psy8863 81 RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSL 160 (442)
Q Consensus 81 ~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~ 160 (442)
+|||++.+++.+.++|+++||||+|+|+..+++|++||.++++||+||.++||+||+||+|+++|+||++++|.|+++++
T Consensus 171 ~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~ 250 (529)
T 4ex5_A 171 RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNAL 250 (529)
T ss_dssp SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTT
T ss_pred CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccC
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce
Q psy8863 161 NMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240 (442)
Q Consensus 161 ~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~ 240 (442)
+.++||+||||+|||+||++|++||||||||||||++++||+|||||||||++|+|++|+|+++|+||+++++.+.+++.
T Consensus 251 ~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~ 330 (529)
T 4ex5_A 251 DMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTAT 330 (529)
T ss_dssp TEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE
T ss_pred CcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecCCcccccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCC
Q psy8863 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLW 320 (442)
Q Consensus 241 ~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~ 320 (442)
+.|.+..++++.||+||||.||+++|..++++.++.+.+.+.+.+++.|+++.+.. +..|++|+++.++++.++|++++
T Consensus 331 ~~~~~~~id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~g~l~~e~~~~~vE~~l~ 409 (529)
T 4ex5_A 331 IQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPA-FLNAGIGALQLALFEETAEAQLW 409 (529)
T ss_dssp EEETTEEEETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGG-GTTCCHHHHHHHHHHHHTGGGCC
T ss_pred eecCceeeccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcc-cCCCCHHHHHHHHHHHHhccccC
Confidence 88988889999999999999999999954666666778889999999988765411 12478999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHH
Q psy8863 321 NPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIH 400 (442)
Q Consensus 321 ~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~ 400 (442)
+|+||+|||.+++|||+.++ +||++++|||||++|+||+|||+|+|||++|+++|++++..|+.++++ ++.+|+|||+
T Consensus 410 ~P~FI~dyP~~~splak~~~-~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~e-a~~~De~yl~ 487 (529)
T 4ex5_A 410 EPTFIIDYPIEVSPLARESD-TVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEE-AMFFDADYIR 487 (529)
T ss_dssp SCEEEEEEEGGGCTTBCBCS-SSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTT-SCCCCHHHHH
T ss_pred CCEEEECCchhhCCCcccCC-CCCCceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcCCcc-cccchHHHHH
Confidence 99999999999999998877 899999999999999999999999999999999999999998888877 7888999999
Q ss_pred HHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 401 ALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 401 ~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
|++||+|||||||||||||+|++||.+|||||++||+++++
T Consensus 488 aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~~ 528 (529)
T 4ex5_A 488 ALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRRE 528 (529)
T ss_dssp HHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCCC
T ss_pred HHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCCC
Confidence 99999999999999999999999999999999999999986
No 2
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=3.6e-111 Score=875.16 Aligned_cols=428 Identities=54% Similarity=0.951 Sum_probs=398.1
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhh-hhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYT-DFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
+++|.+||++|++|||++ +.||||++++.++++.|+ .++.|+.||+|.|+|+|.++++|++||.|++++||++|
T Consensus 74 ~~~R~~gk~~F~~LrD~s-----g~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 74 MTRRIMGKASFVTLQDVG-----GRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKA 148 (504)
T ss_dssp EEEEEETTEEEEEEEETT-----EEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred EEEecCCCcEEEEEEECC-----eeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEeccc
Confidence 478999999999999999 999999998877767787 77899999999999999999999999999999999999
Q ss_pred CCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCC
Q psy8863 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS 159 (442)
Q Consensus 80 ~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~ 159 (442)
..|||.+.+++.+.++|+++||||+|+|+..+++|++||.+++++|+||.++||+||+||+|+++++|+++++|.|++++
T Consensus 149 ~~plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~ 228 (504)
T 1e1o_A 149 LRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNA 228 (504)
T ss_dssp SSCCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETT
T ss_pred CCCCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCC
Confidence 99999999988889999999999998899999999999999999999999999999999999999999999999999899
Q ss_pred CCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy8863 160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239 (442)
Q Consensus 160 ~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~ 239 (442)
++.++||+||||+|+|+||++|++||||||||||||++++||+|||||||+||+|+|++|+|+++|+|++++++++.+++
T Consensus 229 ~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~ 308 (504)
T 1e1o_A 229 LDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT 308 (504)
T ss_dssp TTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcccccCCCccceeHHHHHHHHCCC-CCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcC
Q psy8863 240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQ-YNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETK 318 (442)
Q Consensus 240 ~~~~~~~~~~~~~pf~rit~~ea~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~ 318 (442)
.+.|.+..++++.||+||||.||++++. + +++.++.+.+.+.++++++|+++.+ .|++|+++.++++.+++++
T Consensus 309 ~i~~~~~~i~~~~pf~rity~eAi~~~~-~d~d~~~~~~~~~~~~~~~~~g~~~~~-----~~~~g~l~~~~~~~~ve~~ 382 (504)
T 1e1o_A 309 KVTYGEHVFDFGKPFEKLTMREAIKKYR-PETDMADLDNFDAAKALAESIGITVEK-----SWGLGRIVTEIFDEVAEAH 382 (504)
T ss_dssp EEEETTEEEETTSCCEEEEHHHHHHHHS-TTCCGGGGGSHHHHHHHHHHTTCCCCT-----TCCHHHHHHHHHHHHTGGG
T ss_pred eeeeCCEeeccCCCceEEeHHHHHHHHc-CCCCccccCCHHHHHHHHHHcCCCCCC-----CcCHhHHHHHHHHHHhhcc
Confidence 8888887888889999999999999999 5 7666666788899999999988765 6899999999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHH
Q psy8863 319 LWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDY 398 (442)
Q Consensus 319 ~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~y 398 (442)
+.+|+||+|||.+++|||++.+ +||+++++|||+++|+||+|||+|+|||++|+++|++++..++.++++ ++++|+||
T Consensus 383 ~~~p~fV~dyP~~~~pf~~~~~-~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e-~~~~d~~y 460 (504)
T 1e1o_A 383 LIQPTFITEYPAEVSPLARRND-VNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDE-AMFYDEDY 460 (504)
T ss_dssp CCSCEEEECCBGGGCTTBCBCS-SCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTT-CCCCCHHH
T ss_pred CCCeEEEECCCcccCcCcCCCC-CCCCceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChh-hhhchHHH
Confidence 9999999999999999998887 899999999999999999999999999999999999998887777777 77789999
Q ss_pred HHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 399 IHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 399 l~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
|+|++||+|||||||||+|||+|+++|.+||||||+|||++++
T Consensus 461 l~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 461 VTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp HHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred HHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 9999999999999999999999999999999999999999985
No 3
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=8.8e-110 Score=863.59 Aligned_cols=427 Identities=48% Similarity=0.847 Sum_probs=397.7
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
+++|.+||++|++|||++ +.||||++++..+++.|+.++.|+.||+|.|+|+|.++++|++||.|++++||++|.
T Consensus 66 ~~~R~~gk~~F~~LrD~s-----g~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~ 140 (493)
T 3a74_A 66 MTKRGMGKAGFAHIQDVT-----GQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKAL 140 (493)
T ss_dssp EEEEEETTEEEEEEEETT-----EEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCS
T ss_pred EEEecCCCcEEEEEEECC-----EeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEccccc
Confidence 478999999999999999 999999987755556777788899999999999999999999999999999999999
Q ss_pred CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCC
Q psy8863 81 RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSL 160 (442)
Q Consensus 81 ~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~ 160 (442)
.|||.+.+++.+.++|+++||||+|+||..+++|++||.+++++|+||.++||+||+||+|+++++|+++++|.|+++++
T Consensus 141 ~plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~ 220 (493)
T 3a74_A 141 RPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNAL 220 (493)
T ss_dssp SCCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTT
T ss_pred CCCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCC
Confidence 99999999888999999999999998999999999999999999999999999999999999999999999999988899
Q ss_pred CcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce
Q psy8863 161 NMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240 (442)
Q Consensus 161 ~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~ 240 (442)
++++||+||||+|+|++|++|++||||||||||||++++||+|||||||+|++|+|++|+|+++|+|++++++++.+++.
T Consensus 221 ~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~ 300 (493)
T 3a74_A 221 DMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK 300 (493)
T ss_dssp TEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE
T ss_pred CceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecCCcccccCCCccceeHHHHHHHHCCCCCC-cccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCC
Q psy8863 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNE-IDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKL 319 (442)
Q Consensus 241 ~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~ 319 (442)
+.+.+..++++.||+||||.||++++. |+++ .++ +.+.+.+++++.|+.+.+ .|++|+++.++++.++++++
T Consensus 301 i~~~~~~i~~~~pf~rity~eai~~~~-~~d~~~~~-~~~~~~~~~~~~g~~~~~-----~~~~g~l~~~~~~~~ve~~~ 373 (493)
T 3a74_A 301 IQYGEHLVDLTPEWRRLHMVDAIKEYV-GVDFWRQM-SDEEARELAKEHGVEVAP-----HMTFGHIVNEFFEQKVEDKL 373 (493)
T ss_dssp EEETTEEEECCSSCEEEEHHHHHHHHT-CCCTTSCC-CHHHHHHHHHHTTCCCCT-----TCCHHHHHHHHHHHHTGGGC
T ss_pred EeeCCEeeccCCCcceeeHHHHHHHHh-CCCCcccc-CHHHHHHHHHHcCCCCCC-----CcChhHHHHHHHHHHhhccc
Confidence 888887888889999999999999998 6655 333 677888999999988765 68899999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHH
Q psy8863 320 WNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYI 399 (442)
Q Consensus 320 ~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl 399 (442)
.+|+||+|||.+++|||++.+ +||+++++|||+++|+||+|||+|+|||++|+++|++++..++.++++ ++++|+|||
T Consensus 374 ~~p~fv~dyP~~~~pf~~~~~-~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e-~~~~d~~yl 451 (493)
T 3a74_A 374 IQPTFIYGHPVEISPLAKKNP-DDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDE-AHEMDEDFL 451 (493)
T ss_dssp CSCEEEECCBGGGCTTBCBCS-SCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTT-SCCCCHHHH
T ss_pred CCcEEEECCCcccCCccCcCC-CCCCeEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCch-hhhccHHHH
Confidence 999999999999999998887 899999999999999999999999999999999999998887777777 777899999
Q ss_pred HHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 400 HALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 400 ~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+|++||+|||||||||+|||+|+++|.+||||||+|||++++
T Consensus 452 ~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 493 (493)
T 3a74_A 452 EALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQMRHK 493 (493)
T ss_dssp HHHHTCCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCCC
T ss_pred HHHhCCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 999999999999999999999999999999999999999874
No 4
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=7.6e-109 Score=861.75 Aligned_cols=428 Identities=39% Similarity=0.670 Sum_probs=393.8
Q ss_pred CcccccC-CeEEEEEecCCCCCCCccEEEEEeCCcc-Cchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 1 MLKRVMG-KISFIMLQDTSGPDSNGKIQLYISNEII-GKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 1 ~~~R~~g-~~~Fi~lrD~~~~~~~~~iQvv~~~~~~-~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
+++|.+| |++|++|||++ +.||||++++.. +++.|+.+ +.|+.||+|.|+|+|.++++|++||.|++++||+
T Consensus 65 ~~~R~~gkk~~F~~LrD~s-----g~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~ 139 (521)
T 3bju_A 65 HAKRASGGKLIFYDLRGEG-----VKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLS 139 (521)
T ss_dssp EEEEESSSSEEEEEEEETT-----EEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred EEEecCCCCcEEEEEEECC-----EEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEee
Confidence 4789999 99999999999 999999998765 55566643 6799999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeecc
Q psy8863 78 KSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHH 157 (442)
Q Consensus 78 ~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~ 157 (442)
+|..|||.+.+++.+.++|+++||||+|+|+..+++|++||.+++++|+||.++||+||+||+|+++++||++++|.|++
T Consensus 140 ~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~ 219 (521)
T 3bju_A 140 PCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 219 (521)
T ss_dssp CCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEE
T ss_pred cCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeec
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhc
Q psy8863 158 NSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIG 237 (442)
Q Consensus 158 ~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~ 237 (442)
++++.++||+||||+|+|+++++|++||||||||||||++++||+||||||||||+|+|++|+|+++|+||+++++++.+
T Consensus 220 ~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~ 299 (521)
T 3bju_A 220 NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITG 299 (521)
T ss_dssp TTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCc-------ccccCCCccceeHHHHHHHHCCCCCCc---ccCC---HHHHHHHHHhcCCCCCcccccccccHH
Q psy8863 238 TTKIDYQGR-------LLDFSKSFEKLTIIEAIKKYTPQYNEI---DLQN---KLFLKSELKKINPKFNQKKILNNLKKD 304 (442)
Q Consensus 238 ~~~~~~~~~-------~~~~~~pf~rit~~ea~~~~~~~~~~~---~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~g 304 (442)
++.+.|.+. .+++..||+|+||.||++.+. |+++. ++.+ .+.+.++++++|+.+.. .+++|
T Consensus 300 ~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~-g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~-----~~~~~ 373 (521)
T 3bju_A 300 SYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKAL-GMKLPETNLFETEETRKILDDICVAKAVECPP-----PRTTA 373 (521)
T ss_dssp SSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHH-TSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCS-----CCCHH
T ss_pred CceEEecccccccccceeccCCCcccccHHHHHHHHh-CCCCCccccCCcHHHHHHHHHHHHHcCCCCCC-----CCCHH
Confidence 888877665 467889999999999999987 66553 3443 34677778888887655 67899
Q ss_pred HHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhh
Q psy8863 305 ILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKN 384 (442)
Q Consensus 305 ~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~ 384 (442)
.++.++++.++++++.+|+||+|||.+++|||++.+ +||++++|||||++|+||+|||+|+|||++|+++|++++..+.
T Consensus 374 ~~l~~~~e~~ve~~l~~P~fI~dyP~~~spla~~~~-~dp~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~ 452 (521)
T 3bju_A 374 RLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHR-SKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKA 452 (521)
T ss_dssp HHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCS-SSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCccccCcccccCC-CCCCeeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887 8999999999999999999999999999999999999988887
Q ss_pred ccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 385 EINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 385 ~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
.++++ ++.+|+|||+|++||+|||||||||||||+|++||.+|||||++|||++++
T Consensus 453 ~g~~e-~~~~d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 453 AGDDE-AMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HTCTT-SCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred cCCCh-hhcchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 77777 676789999999999999999999999999999999999999999999975
No 5
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=3.6e-98 Score=766.17 Aligned_cols=399 Identities=23% Similarity=0.358 Sum_probs=340.0
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEec
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITK 78 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~ 78 (442)
+++|.+||++|++|||++ +.||||++++..+++.|+.+++|+.||+|.|+|+|.++++ |++||++++++||++
T Consensus 26 ~~~R~~g~~~Fi~LrD~~-----g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~vl~~ 100 (438)
T 3nem_A 26 WEVKDLGGIKFLWIRDRD-----GIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNR 100 (438)
T ss_dssp EEEEEETTEEEEEEEETT-----EEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEEC
T ss_pred EEEecCCCeEEEEEEECC-----eeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEEEEec
Confidence 368999999999999999 9999999998777778888899999999999999999876 899999999999999
Q ss_pred cCCCCCccccc--CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCCCCCceee
Q psy8863 79 SLRPLPNKFQK--LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAIAKPFIT 155 (442)
Q Consensus 79 ~~~~lP~~~~~--~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~~~~~f~~ 155 (442)
|..++|++.++ ..+.++|+++||||+| ++..+++|++||.+++++|+||.++||+||+||+|+++ ++| +++.|.+
T Consensus 101 ~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg-~~~~f~~ 178 (438)
T 3nem_A 101 AETPLPLDPTGKVKAELDTRLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEG-GTELFPM 178 (438)
T ss_dssp BCSSCSSCTTSSSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSC-SSSCCEE
T ss_pred CCCCCCCCccccccCCHHHHhhchHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCCCC-CccceeE
Confidence 98899998766 3678999999999995 89999999999999999999999999999999999975 333 2345554
Q ss_pred ccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCC-HHHHHHHHHHHHHHHHH
Q psy8863 156 HHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTN-YIWLMKFTEKMIKKIIM 233 (442)
Q Consensus 156 ~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~-~~dl~~~~e~li~~i~~ 233 (442)
+++++++||+||||+|||+++++|++||||||||||||++++ ||+|||||||||++|+| ++|+|+++|+|++++++
T Consensus 179 --~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~ 256 (438)
T 3nem_A 179 --KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAIN 256 (438)
T ss_dssp --EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHH
T ss_pred --eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999996 99999999999999999 99999999999999999
Q ss_pred HhhcCce--eecCCcccc-cCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHH
Q psy8863 234 DCIGTTK--IDYQGRLLD-FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLML 310 (442)
Q Consensus 234 ~~~~~~~--~~~~~~~~~-~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 310 (442)
.+.+.+. +++.+..++ ++.||+|+||.||++++.. .|++..++ .+++....++
T Consensus 257 ~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~-------------------~g~~~~~~-----~dl~~~~e~~ 312 (438)
T 3nem_A 257 YVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGD-------------------LGKEIPWG-----EDIDTEGERL 312 (438)
T ss_dssp HHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHH-------------------TTCCCCTT-----SCCCHHHHHH
T ss_pred HHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHH-------------------cCCCCCCC-----CCCCcHHHHH
Confidence 9987653 334444333 4579999999999986532 22222221 1222222222
Q ss_pred HHhhh-hcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCc
Q psy8863 311 FEETT-ETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGE 389 (442)
Q Consensus 311 ~~~~~-e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e 389 (442)
....+ +....+|+||+|||.+++|||++.+++||++++|||||++|+||+|||+|+|||++|+++|+++ +.++
T Consensus 313 l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G~Ei~nG~~el~d~~~l~~r~~~~------g~~~ 386 (438)
T 3nem_A 313 LGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEK------GLNP 386 (438)
T ss_dssp HHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHT------TCCG
T ss_pred HHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECCEEEEeCeeecCCHHHHHHHHHHc------CCCh
Confidence 22223 2234679999999999999988776689999999999999999999999999999999999865 2233
Q ss_pred cccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 390 LSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 390 ~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
. .++|||+|++||+|||||||||+|||+|+++|.+|||||++|||++..
T Consensus 387 -~--~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~r 435 (438)
T 3nem_A 387 -E--SFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRR 435 (438)
T ss_dssp -G--GGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSC
T ss_pred -h--HHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccC
Confidence 1 238999999999999999999999999999999999999999999853
No 6
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=1.3e-96 Score=777.60 Aligned_cols=412 Identities=23% Similarity=0.446 Sum_probs=347.3
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec-------CCceeEEEEeEEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT-------NTGELSIKVSSLK 74 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~-------~~~~~el~~~~i~ 74 (442)
++|.+||++|++|||++ +.||||++++. + .|+.++.|+.||+|.|+|+|.++ ++|++||.|++++
T Consensus 27 ~~R~~G~~~Fi~LrD~~-----g~iQvv~~~~~--~-~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~i~ 98 (580)
T 1l0w_A 27 RRRDLGGLIFLDLRDRE-----GLVQLVAHPAS--P-AYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALE 98 (580)
T ss_dssp EEEECSSCEEEEEEETT-----EEEEEEECTTS--T-THHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEE
T ss_pred EEecCCCeEEEEEEECC-----eeEEEEEeCCh--h-HHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEeEEE
Confidence 68999999999999999 99999998764 2 67778899999999999999987 4689999999999
Q ss_pred EEeccCCCCCccc--------ccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec-CC
Q psy8863 75 LITKSLRPLPNKF--------QKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN-KP 145 (442)
Q Consensus 75 vl~~~~~~lP~~~--------~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~-~~ 145 (442)
||++|. ++|+.. ++..++++|+++||||+| ++.++++|++||++++++|+||.++||+||+||+|+. +|
T Consensus 99 vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~ 176 (580)
T 1l0w_A 99 VLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP 176 (580)
T ss_dssp EEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS
T ss_pred EeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC
Confidence 999997 555433 446788999999999997 9999999999999999999999999999999999995 57
Q ss_pred CCCCCCceeeccCCCCccee-eecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHH
Q psy8863 146 GGAIAKPFITHHNSLNMKMF-LRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFT 224 (442)
Q Consensus 146 ~g~~~~~f~~~~~~~~~~~~-L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~ 224 (442)
+|| ++|.|+++.++..+| |+||||+|||+||++|++||||||||||||+++++|+||||||||||+|+|++|+|+++
T Consensus 177 eGA--r~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d~~dvm~~~ 254 (580)
T 1l0w_A 177 EGA--RDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELN 254 (580)
T ss_dssp SSS--CCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHH
T ss_pred CCC--CCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecCCCHHHHHHHH
Confidence 775 689988776666666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCC-------Cccc----------------------
Q psy8863 225 EKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYN-------EIDL---------------------- 275 (442)
Q Consensus 225 e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~-------~~~~---------------------- 275 (442)
|+|++++++++.+ .+++.||+||||.||+++|+.+.. ..++
T Consensus 255 E~li~~i~~~v~~----------~~~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~ 324 (580)
T 1l0w_A 255 ERLMAHVFREALG----------VELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALA 324 (580)
T ss_dssp HHHHHHHHHHHTC----------CCCCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEE
T ss_pred HHHHHHHHHHHhC----------CccCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccceeEEEe
Confidence 9999999999875 245679999999999999974210 0011
Q ss_pred -------CCHHHHHHHHHhcCCC------CCcc-------ccc----------------------------ccccHHHHH
Q psy8863 276 -------QNKLFLKSELKKINPK------FNQK-------KIL----------------------------NNLKKDILQ 307 (442)
Q Consensus 276 -------~~~~~l~~~~~~~~~~------~~~~-------~~~----------------------------~~~~~g~l~ 307 (442)
.+.+.+.+.++++|.. ...+ +++ ....+|+++
T Consensus 325 ~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr 404 (580)
T 1l0w_A 325 LPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVR 404 (580)
T ss_dssp ESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHH
Confidence 1235666667666532 0000 000 013466777
Q ss_pred HHHHHh--hhhcCCCCcEEEEcCCCC------------CCCCCcccCCC------CC-ce-eeEEEEEEcCEEeeccccc
Q psy8863 308 LMLFEE--TTETKLWNPTYITNYPTE------------ISPLARKSNIE------NN-NI-TERFELFIIGNEIANGFSE 365 (442)
Q Consensus 308 ~~~~~~--~~e~~~~~p~~v~~~P~~------------~~pf~~~~~~~------~~-~~-~~~fdl~~~G~Ei~~G~~r 365 (442)
.++++. ++++ ..+|+||+|||.. .+||||+.+.+ || .+ +++|||+++|+||+|||+|
T Consensus 405 ~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~r 483 (580)
T 1l0w_A 405 LRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIR 483 (580)
T ss_dssp HHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEB
T ss_pred HHHHHHhccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCEEEEeCeee
Confidence 777776 5666 6789999999996 79999998721 57 36 9999999999999999999
Q ss_pred cCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 366 LNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 366 ~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+|||++|+++|+++ ++++++ ....++|||+|++||+|||||||||+|||+|+++|.+||||||+|||+++.
T Consensus 484 i~d~~~q~~rf~~~----g~~~ee-~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~ 554 (580)
T 1l0w_A 484 IHDPRLQARVFRLL----GIGEEE-QREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEG 554 (580)
T ss_dssp CCCHHHHHHHHHHH----TCCTTT-HHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTS
T ss_pred cCCHHHHHHHHHHc----CCChhH-HHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCc
Confidence 99999999999865 444443 333468999999999999999999999999999999999999999999864
No 7
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=8.9e-96 Score=773.52 Aligned_cols=411 Identities=26% Similarity=0.469 Sum_probs=347.9
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~ 72 (442)
++|.+||++|++|||++ +.||||++++. ++.|+.++.|+.||+|.|+|+|.++ ++|++||.|++
T Consensus 26 ~~R~~G~~~Fi~LrD~~-----g~iQvv~~~~~--~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~ 98 (585)
T 1c0a_A 26 RRRDLGSLIFIDMRDRE-----GIVQVFFDPDR--ADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASS 98 (585)
T ss_dssp EEEECSSCEEEEEEETT-----EEEEEEECGGG--HHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEE
T ss_pred EEecCCCcEEEEEEECC-----eeEEEEEeCCc--hHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEEeE
Confidence 68999999999999999 99999998653 4577888899999999999999887 46899999999
Q ss_pred EEEEeccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec-CCCCCCCC
Q psy8863 73 LKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN-KPGGAIAK 151 (442)
Q Consensus 73 i~vl~~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~-~~~g~~~~ 151 (442)
++||++|. ++|++.++..+.++|+++||||+| ++.++++|++||++++++|+||.++||+||+||+|+. +|+|| +
T Consensus 99 i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eGA--r 174 (585)
T 1c0a_A 99 LTIINRAD-VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA--R 174 (585)
T ss_dssp EEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSS--C
T ss_pred EEEEeccC-CCCCCccccCCHhHhhhchHhhhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCCC--c
Confidence 99999997 788887777889999999999997 9999999999999999999999999999999999994 67776 6
Q ss_pred ceeeccCCCCccee-eecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 152 PFITHHNSLNMKMF-LRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 152 ~f~~~~~~~~~~~~-L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
+|.|+++.++..+| |+||||+|||+||++|++||||||||||||+++++|+||||||||||+|+|++|+|+++|+|+++
T Consensus 175 ~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dvm~~~E~li~~ 254 (585)
T 1c0a_A 175 DYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRH 254 (585)
T ss_dssp CCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred cceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHHHHHHHHHHHH
Confidence 79988776666665 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCCCCccc-----------------------------------
Q psy8863 231 IIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDL----------------------------------- 275 (442)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~~~~~~----------------------------------- 275 (442)
+++++.+.+ ++. |+|+||.||++.|+.+. +|+
T Consensus 255 i~~~v~~~~----------~~~-f~r~ty~ea~~~~g~dk--pd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i 321 (585)
T 1c0a_A 255 LWLEVKGVD----------LGD-FPVMTFAEAERRYGSDK--PDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAAL 321 (585)
T ss_dssp HHHHHHSCC----------CCS-CCEEEHHHHHHHHSCSS--CCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEE
T ss_pred HHHHHhCCC----------ccc-cceeeHHHHHHHhcCCC--ccccCCceeEEehhhhccCCcceehhhhhccCceEEEE
Confidence 999987632 233 99999999999997531 111
Q ss_pred ----------CCHHHHHHHHHhcCCC------CCc-----c-------ccc-----------------------------
Q psy8863 276 ----------QNKLFLKSELKKINPK------FNQ-----K-------KIL----------------------------- 298 (442)
Q Consensus 276 ----------~~~~~l~~~~~~~~~~------~~~-----~-------~~~----------------------------- 298 (442)
.+.+++.+++++.|.. ... + +++
T Consensus 322 ~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~ 401 (585)
T 1c0a_A 322 RVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKI 401 (585)
T ss_dssp EETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHH
T ss_pred EccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccc
Confidence 0234455555555421 000 0 000
Q ss_pred ccccHHHHHHHHHHh--hhhcCCCCcEEEEcCCCC-----------CCCCCcccCCC------CCc-e-eeEEEEEEcCE
Q psy8863 299 NNLKKDILQLMLFEE--TTETKLWNPTYITNYPTE-----------ISPLARKSNIE------NNN-I-TERFELFIIGN 357 (442)
Q Consensus 299 ~~~~~g~l~~~~~~~--~~e~~~~~p~~v~~~P~~-----------~~pf~~~~~~~------~~~-~-~~~fdl~~~G~ 357 (442)
..+.+|+++.++++. ++++...+|+||+|||.. .+||||+.+.+ ||+ + +++|||+++|+
T Consensus 402 ~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~ 481 (585)
T 1c0a_A 402 VADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY 481 (585)
T ss_dssp HHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE
T ss_pred hhhhhHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCE
Confidence 023467888888877 577767789999999996 79999998731 573 6 99999999999
Q ss_pred EeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCC
Q psy8863 358 EIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPH 437 (442)
Q Consensus 358 Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr 437 (442)
||+|||+|+|||++|+++|+++ ++++++ ....++|||+|++||+|||||||||+|||+|+++|.+||||||+|||
T Consensus 482 Ei~~Gs~ri~d~~~q~~rf~~~----g~~~ee-~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr 556 (585)
T 1c0a_A 482 EVGGGSVRIHNGDMQQTVFGIL----GINEEE-QREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPK 556 (585)
T ss_dssp EEEEEEEBCCCHHHHHHHHHHT----TCCHHH-HHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCC
T ss_pred EEeeeeeecCCHHHHHHHHHHc----CCChHH-HHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCC
Confidence 9999999999999999999865 333322 22336799999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy8863 438 LRNE 441 (442)
Q Consensus 438 ~~~~ 441 (442)
+++.
T Consensus 557 ~~~~ 560 (585)
T 1c0a_A 557 TTAA 560 (585)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 9864
No 8
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=5.2e-96 Score=761.70 Aligned_cols=397 Identities=24% Similarity=0.387 Sum_probs=323.4
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCC-ccCchhhhhhcCCCCCcEEEEEEEEeecC-------CceeEEEEeEE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNE-IIGKNLYTDFKNYDIGDIIGAKGTLFKTN-------TGELSIKVSSL 73 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~-~~~~~~~~~~~~L~~gs~V~V~G~v~~~~-------~~~~el~~~~i 73 (442)
++|.+||++|++|||++ ++||||++++ ..+++++++++.|+.||+|.|+|+|.+++ +|++||++++|
T Consensus 73 ~~R~~gkl~Fi~LrD~~-----g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i 147 (548)
T 3i7f_A 73 AVRGKGNMVFLFLRKGI-----YTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSI 147 (548)
T ss_dssp EEEECSSEEEEEEEETT-----EEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEE
T ss_pred EEecCCCeEEEEEEECC-----eeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEE
Confidence 68999999999999999 9999999974 45667788889999999999999999875 47899999999
Q ss_pred EEEeccCCCCCccccc---------------------------------------------------------CCchhhh
Q psy8863 74 KLITKSLRPLPNKFQK---------------------------------------------------------LSNQEIK 96 (442)
Q Consensus 74 ~vl~~~~~~lP~~~~~---------------------------------------------------------~~~~~~r 96 (442)
+|+++|..+||++..+ ..+.++|
T Consensus 148 ~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~r 227 (548)
T 3i7f_A 148 AVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTR 227 (548)
T ss_dssp EEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHH
T ss_pred EEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHh
Confidence 9999998899987421 2467899
Q ss_pred ccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHH
Q psy8863 97 YRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKR 176 (442)
Q Consensus 97 ~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ 176 (442)
+++||||+| ++..+++|++||.+++++|+||.++||+||+||+|+++++++++++|.+ ++++.++||+||||+|||+
T Consensus 228 l~~R~LdLR-~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--~~~~~~~yL~~Spql~~k~ 304 (548)
T 3i7f_A 228 LDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--KYFDRKAYLAQSPQLYKQM 304 (548)
T ss_dssp HTTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------CCBCSCTHHHHHH
T ss_pred hhchhhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE--ecCCCceEeccCHHHHHHH
Confidence 999999998 8999999999999999999999999999999999998766666789976 5689999999999999999
Q ss_pred HHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccC-CHHHHHHHHHHHHHHHHHHhhcCcee-------ecCCcc
Q psy8863 177 LIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYT-NYIWLMKFTEKMIKKIIMDCIGTTKI-------DYQGRL 247 (442)
Q Consensus 177 ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~-~~~dl~~~~e~li~~i~~~~~~~~~~-------~~~~~~ 247 (442)
+|++|++||||||||||||++++ ||+||||||||||+|. +++++|+++|+|++++++.+.+++.. .+....
T Consensus 305 ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~ 384 (548)
T 3i7f_A 305 AIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFED 384 (548)
T ss_dssp HHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCC
T ss_pred HHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCccc
Confidence 99999999999999999999985 9999999999999998 79999999999999999998765421 122223
Q ss_pred cccCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCc-EEEE
Q psy8863 248 LDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNP-TYIT 326 (442)
Q Consensus 248 ~~~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p-~~v~ 326 (442)
+.+ .||+|+||.||++++.. .|++..+ ..+++.....++..++++.++.| +||+
T Consensus 385 ~~~-~pf~rit~~eai~~l~~-------------------~g~~~~~-----~~dl~~~~e~~l~~~i~~~~~~~~~~i~ 439 (548)
T 3i7f_A 385 LIY-RPFLRLTYKEAIEMLRA-------------------SGETIGD-----YDDFTTPQEVKLGELIKAKYNTDFYILD 439 (548)
T ss_dssp CCC-CSCEEEEHHHHHHHHHH-------------------TTCCCCT-----TCCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ccc-CCcceeEHHHHHHHHHH-------------------cCCCCCC-----ccccchHHHHHHHHHHHHHcCCCeEEEe
Confidence 334 79999999999987632 1222222 11222333444555566666665 5678
Q ss_pred cCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCC
Q psy8863 327 NYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGM 406 (442)
Q Consensus 327 ~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~ 406 (442)
|||.+++|||++.+++|+++++|||||++|+||+|||+|+|||++|++||+++ |.++ . .++|||+|++||+
T Consensus 440 ~yP~~~~pfYak~~~~dp~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R~~~~------G~d~-~--~~e~yl~al~yG~ 510 (548)
T 3i7f_A 440 KFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEK------GVDP-A--TLKDYIESFRFGS 510 (548)
T ss_dssp CCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHHHHHHHHT------TCCG-G--GGHHHHHTTSSCC
T ss_pred cCccccCchhhccCCCCCCeEEEEEEEECCEEEeeCeeecCCHHHHHHHHHHc------CCCh-H--HHHHHHHHHhCCC
Confidence 99999999998776689999999999999999999999999999999999754 3343 2 3589999999999
Q ss_pred CCccceehhHHHHHHHHcCCCCccccccCCCCCC
Q psy8863 407 PPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~ 440 (442)
|||||||||+|||+|+++|++|||||++|||++.
T Consensus 511 PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~ 544 (548)
T 3i7f_A 511 WPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPI 544 (548)
T ss_dssp CCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTT
T ss_pred CCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCC
Confidence 9999999999999999999999999999999975
No 9
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=2.6e-96 Score=755.96 Aligned_cols=396 Identities=22% Similarity=0.299 Sum_probs=330.3
Q ss_pred CcccccC-CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC----------ceeEEE
Q psy8863 1 MLKRVMG-KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT----------GELSIK 69 (442)
Q Consensus 1 ~~~R~~g-~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~----------~~~el~ 69 (442)
+++|.+| +++|++|||++ +.||||++++..+ +.+ .+..|+.||+|.|+|+|++++. |++||+
T Consensus 40 ~~~R~~Gk~~~Fi~LrD~s-----g~iQvv~~~~~~~-~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~ 112 (456)
T 3m4p_A 40 YHIRKARKTLIFVELRDGS-----GYCQCVIFGKELC-EPE-KVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQ 112 (456)
T ss_dssp EEEECCSSSEEEEEEECSS-----CEEEEEEESTTTT-CHH-HHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEE
T ss_pred EEEecCCCceEEEEEEeCC-----ccEEEEEecccch-hhH-HhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEE
Confidence 3689997 69999999999 9999999985443 233 3458999999999999987653 789999
Q ss_pred EeEEEEEeccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCC
Q psy8863 70 VSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGA 148 (442)
Q Consensus 70 ~~~i~vl~~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~ 148 (442)
|++++|+++|..++|.+.++..+.++|+++||||+| ++..+++|++||++++++|+||.++||+||+||+|+++ ++|+
T Consensus 113 ~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR-~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg 191 (456)
T 3m4p_A 113 VTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGG 191 (456)
T ss_dssp EEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------
T ss_pred EeEEEEEecCCCCCcccccccCCHHHHhhchHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCc
Confidence 999999999987777777777889999999999995 99999999999999999999999999999999999864 4443
Q ss_pred CCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHH
Q psy8863 149 IAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKM 227 (442)
Q Consensus 149 ~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~l 227 (442)
++.|.+ ++|++++||+||||+|||++++ |++||||||||||||++++ ||+|||||||||++|+|++|+|+++|+|
T Consensus 192 -~~~f~~--~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~l 267 (456)
T 3m4p_A 192 -STLFKL--QYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDL 267 (456)
T ss_dssp -CCCCEE--EETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred -cccccc--cccCCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHH
Confidence 356754 6899999999999999999875 6999999999999999985 9999999999999999999999999999
Q ss_pred HHHHHHHhhcCceeecCCcccc---cCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHH
Q psy8863 228 IKKIIMDCIGTTKIDYQGRLLD---FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKD 304 (442)
Q Consensus 228 i~~i~~~~~~~~~~~~~~~~~~---~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 304 (442)
++++++.+.+++...+.....+ .+.||+||||.||++.+.+ .|++... ..+.||
T Consensus 268 i~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~-------------------~g~~~~~----~~~~~g 324 (456)
T 3m4p_A 268 VCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCND-------------------HGILNKD----KPFEYG 324 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHH-------------------HTCCSSS----SCCCTT
T ss_pred HHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHH-------------------cCCCccc----cCcchH
Confidence 9999999987654322211222 3579999999999986532 2222110 012334
Q ss_pred HHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHHHhhHHHh
Q psy8863 305 ILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKNQIDLK 383 (442)
Q Consensus 305 ~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~~~~~~~~ 383 (442)
..+...++.++++++.+|+||+|||++++|||++.+++||++++|||||++| +||+|||+|+||+++|+++|++.
T Consensus 325 ~~l~~~~e~~l~~~~~~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~---- 400 (456)
T 3m4p_A 325 EDISEKPERQMTDEIGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKAN---- 400 (456)
T ss_dssp CCCCHHHHHHHHHHHTSCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHhCceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHHHHHHHHHc----
Confidence 4444455566666678899999999999999887666889999999999999 59999999999999999998754
Q ss_pred hccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCC
Q psy8863 384 NEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440 (442)
Q Consensus 384 ~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~ 440 (442)
+.++.. + +|||++++||+|||||||||+|||+|+++|++|||||++|||++.
T Consensus 401 --g~~~~~--~-~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~ 452 (456)
T 3m4p_A 401 --GLNPDP--Y-YWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLE 452 (456)
T ss_dssp --TCCCGG--G-HHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTT
T ss_pred --CCCHHH--H-HHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCC
Confidence 333312 2 799999999999999999999999999999999999999999975
No 10
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=5.3e-93 Score=738.28 Aligned_cols=402 Identities=22% Similarity=0.368 Sum_probs=335.2
Q ss_pred CcccccCCe-EEEEEecCCCCCCCccEEEEEeCC--c-cCchhhhhhcCCCCCcEEEEEEEEeecC-------CceeEEE
Q psy8863 1 MLKRVMGKI-SFIMLQDTSGPDSNGKIQLYISNE--I-IGKNLYTDFKNYDIGDIIGAKGTLFKTN-------TGELSIK 69 (442)
Q Consensus 1 ~~~R~~g~~-~Fi~lrD~~~~~~~~~iQvv~~~~--~-~~~~~~~~~~~L~~gs~V~V~G~v~~~~-------~~~~el~ 69 (442)
+++|.+||+ +|++|||++ +.||||++++ . .+++.++.++.|+.||+|.|+|+|.+++ +|++||.
T Consensus 46 ~~~R~~g~~l~Fi~LrD~~-----g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~ 120 (487)
T 1eov_A 46 HNTRQQGATLAFLTLRQQA-----SLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIH 120 (487)
T ss_dssp EEEEECSSSEEEEEEEETT-----EEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEE
T ss_pred EEeeccCCccEEEEEEECC-----ccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEE
Confidence 368999998 999999999 9999999876 2 4567788888999999999999999886 3789999
Q ss_pred EeEEEEEeccCCCCCcccc------------c--CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEE
Q psy8863 70 VSSLKLITKSLRPLPNKFQ------------K--LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFME 135 (442)
Q Consensus 70 ~~~i~vl~~~~~~lP~~~~------------~--~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~E 135 (442)
|++++||++|..++|++.. + ..+.++|+++||||+| ++..++++++||.+++++|+||.++||+|
T Consensus 121 ~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr-~~~~~~~~~~rs~i~~~ir~~~~~~gF~E 199 (487)
T 1eov_A 121 ITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTE 199 (487)
T ss_dssp EEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecC-CHHHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999999888897432 2 2678999999999998 89999999999999999999999999999
Q ss_pred ecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhcc
Q psy8863 136 VETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAY 214 (442)
Q Consensus 136 V~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~ 214 (442)
|+||+|+++.+++++++|.+. ++++++||+||||+|+|++|++|++||||||||||+|++++ ||+|||||||||++|
T Consensus 200 V~TPil~~~~~~~ga~~f~~~--~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af 277 (487)
T 1eov_A 200 VHTPKLLGAPSEGGSSVFEVT--YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAF 277 (487)
T ss_dssp CCCCSEESSCSSSSSCCCEEE--ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEEC
T ss_pred EeCCEEEEecCCCCcccceec--cCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhh
Confidence 999999987677777999886 58999999999999999999999999999999999999985 999999999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHHHhhcCceee-------cCCcccccCC--CccceeHHHHHHHHCCCCCCcccCCHHHHHHH
Q psy8863 215 T-NYIWLMKFTEKMIKKIIMDCIGTTKID-------YQGRLLDFSK--SFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSE 284 (442)
Q Consensus 215 ~-~~~dl~~~~e~li~~i~~~~~~~~~~~-------~~~~~~~~~~--pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~ 284 (442)
. +++|+|+++|+|++++++++.+++..+ +....+++.. ||++++|.||++++..
T Consensus 278 ~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~---------------- 341 (487)
T 1eov_A 278 EEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRA---------------- 341 (487)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHH----------------
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHH----------------
Confidence 7 699999999999999999987654321 1222334433 8999999999975431
Q ss_pred HHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCC-CcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccc
Q psy8863 285 LKKINPKFNQKKILNNLKKDILQLMLFEETTETKLW-NPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGF 363 (442)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~-~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~ 363 (442)
.|++..+. .+++.........++++.++ .|+||+|||...+|||++..++||+++++|||+++|+||+|||
T Consensus 342 ---~g~~~~~~-----~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~Ei~~G~ 413 (487)
T 1eov_A 342 ---AGKEIGDF-----EDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGA 413 (487)
T ss_dssp ---TTCCCCTT-----CCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEE
T ss_pred ---hCCCCCcc-----cchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEEEEeCCEEEEeeE
Confidence 12221110 11112222233333433444 4789999999999997555448899999999999999999999
Q ss_pred cccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 364 SELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 364 ~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+|+|||++|+++|++. |.++ ....++|||+|++||+|||||||||+|||+|+++|.+||||||+|||++..
T Consensus 414 ~rl~d~~~q~~r~~~~------g~~~-~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~~r 484 (487)
T 1eov_A 414 QRIHDHALLQERMKAH------GLSP-EDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKR 484 (487)
T ss_dssp EBCCCHHHHHHHHHHT------TCCT-TSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTB
T ss_pred EecCCHHHHHHHHHHc------CCCh-hhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCCCCC
Confidence 9999999999999754 3333 222458999999999999999999999999999999999999999999853
No 11
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=6.8e-94 Score=736.65 Aligned_cols=393 Identities=21% Similarity=0.322 Sum_probs=320.2
Q ss_pred CcccccC-CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEee-----cCCceeEEEEeEEE
Q psy8863 1 MLKRVMG-KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK-----TNTGELSIKVSSLK 74 (442)
Q Consensus 1 ~~~R~~g-~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~-----~~~~~~el~~~~i~ 74 (442)
+++|.+| +++|++|||++ +.||||++++. + +.|+.. +|+.||+|.|+|+|.+ +++|++||.+++++
T Consensus 21 ~~~R~~Gk~~~Fi~LrD~~-----g~iQvv~~~~~-~-~~~~~~-~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~~~ 92 (435)
T 2xgt_A 21 HRMRRQGKSLMFFILRDGT-----GFLQVLLMDKL-C-QTYDAL-TVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWK 92 (435)
T ss_dssp EEEEECTTSEEEEEEECSS-----CEEEEEEEGGG-G-SSHHHH-HCCTTCEEEEEEEEEECC------TTEEEEEEEEE
T ss_pred EEecccCCCcEEEEEEECC-----ceEEEEECCcc-h-hHHHHh-cCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEEEE
Confidence 3689996 79999999999 99999998542 2 245444 6999999999999988 44689999999999
Q ss_pred EEeccC----CCCCcccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC-CCCCC
Q psy8863 75 LITKSL----RPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK-PGGAI 149 (442)
Q Consensus 75 vl~~~~----~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-~~g~~ 149 (442)
|++++. .|+|.+ ..+.++|+++||||+| ++..+++|++||++++++|+||.++||+||+||+|+++ ++|+
T Consensus 93 vl~~~~p~~~~pl~~~---~~~~e~r~~~R~Ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~- 167 (435)
T 2xgt_A 93 IIGNAPPGGIDNVLNE---EASVDKMLDNRHLVIR-GENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGG- 167 (435)
T ss_dssp EEECCCTTHHHHHCC-----CCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCT-
T ss_pred EeecCCCccccccccc---CCCHHHHhhCeeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCCCc-
Confidence 999852 244444 4678999999999995 99999999999999999999999999999999999864 5553
Q ss_pred CCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHH
Q psy8863 150 AKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228 (442)
Q Consensus 150 ~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li 228 (442)
++.|.+ +++|+++||+||||+|||++|+ |++||||||||||||++++ ||+||||||||||+|+|++|+|+++|+|+
T Consensus 168 ~~~F~~--~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 168 STLFNL--DYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp TSCCEE--EETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred hhceee--ccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 467865 5789999999999999999885 7999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHHhhcCceee--cCCccccc---CCCccceeHHHHHHHHCC-CCCCcccCCHHHHHHHHHhcCCCCCccccccccc
Q psy8863 229 KKIIMDCIGTTKID--YQGRLLDF---SKSFEKLTIIEAIKKYTP-QYNEIDLQNKLFLKSELKKINPKFNQKKILNNLK 302 (442)
Q Consensus 229 ~~i~~~~~~~~~~~--~~~~~~~~---~~pf~rit~~ea~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 302 (442)
+++++++.+++... +....+++ ..||+|+||.||++.+.. |+.... +. ...
T Consensus 245 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~~~~--------------~~---------~~~ 301 (435)
T 2xgt_A 245 CDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEF--------------GN---------TFT 301 (435)
T ss_dssp HHHHHHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCBCTT--------------SC---------BCC
T ss_pred HHHHHHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcCCCccc--------------cc---------ccc
Confidence 99999998765321 11112232 369999999999987652 111000 00 011
Q ss_pred HHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcC-EEeeccccccCCHHHHHHHHHhhHH
Q psy8863 303 KDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIG-NEIANGFSELNDPEEQSVRFKNQID 381 (442)
Q Consensus 303 ~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~~~~~~~~~~~ 381 (442)
+|..+...++..++..+.+|+||+|||.+++|||++.+++||+++++|||+++| +||+|||+|+||+++|+++|++.
T Consensus 302 ~g~~l~~~~e~~l~~~~~~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~-- 379 (435)
T 2xgt_A 302 YGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNV-- 379 (435)
T ss_dssp TTSCCCHHHHHHHHHHHTSCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHH--
T ss_pred hhhHHHHHHHHHHHHhcCCcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHc--
Confidence 222222223333444456899999999999999988776889999999999999 59999999999999999999854
Q ss_pred HhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 382 LKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 382 ~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
|.++ . ..+||++|++||+|||||||||+|||+|+++|.+|||||++|||+++.
T Consensus 380 ----g~~~-~--~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~ 432 (435)
T 2xgt_A 380 ----EIDP-K--PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGR 432 (435)
T ss_dssp ----TCCC-G--GGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTB
T ss_pred ----CCCH-H--HHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCC
Confidence 3333 2 137999999999999999999999999999999999999999999863
No 12
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.2e-93 Score=726.61 Aligned_cols=392 Identities=22% Similarity=0.382 Sum_probs=332.4
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEec
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITK 78 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~ 78 (442)
+++|.+||++|++|||++ +.||||++++. +.|+.++.|+.||+|.|+|+|.++++ |++||.|++++||++
T Consensus 26 ~~~R~~g~~~F~~lrD~~-----g~iQ~v~~~~~---~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~ 97 (429)
T 1wyd_A 26 HLLRDLGGKKFIILRDKT-----GLGQVVVDKNS---SAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSK 97 (429)
T ss_dssp EEEEEETTEEEEEEEETT-----EEEEEEECTTS---TTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEEEEEC
T ss_pred EEEecCCCeEEEEEEECC-----eeEEEEEeCCh---HHHHHHHhCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEecc
Confidence 368999999999999999 99999998764 46777889999999999999999876 489999999999999
Q ss_pred cCCCCCccccc--CCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeec
Q psy8863 79 SLRPLPNKFQK--LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITH 156 (442)
Q Consensus 79 ~~~~lP~~~~~--~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~ 156 (442)
|..++|+.... ..+.++|+++||||+| ++..++++++||.+++++|+||.++||+||+||+|+++.+++++++|.|
T Consensus 98 ~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~- 175 (429)
T 1wyd_A 98 AKAPLPLDVSGKVKADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPV- 175 (429)
T ss_dssp CCSSCSSCSSSCCCCCHHHHHHTHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEE-
T ss_pred CCCCCCCCccccccCChhHhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEE-
Confidence 98788865432 3678999999999998 9999999999999999999999999999999999998765556688987
Q ss_pred cCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHh
Q psy8863 157 HNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDC 235 (442)
Q Consensus 157 ~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~ 235 (442)
+++++++||+||||+|+|+ |++|++|||+||||||+|++++ ||+|||||||+|++|.|++|+|+++|+|++++++++
T Consensus 176 -~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~ 253 (429)
T 1wyd_A 176 -IYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTI 253 (429)
T ss_dssp -EETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred -ecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999 7789999999999999999986 999999999999999999999999999999999999
Q ss_pred hcCce--eecCCccccc-CCCccceeHHHHHHHHCC-CCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHH
Q psy8863 236 IGTTK--IDYQGRLLDF-SKSFEKLTIIEAIKKYTP-QYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLF 311 (442)
Q Consensus 236 ~~~~~--~~~~~~~~~~-~~pf~rit~~ea~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 311 (442)
.+++. +++.+..+++ +.||+|+||.||++++.+ |++ ...++ ++......+.
T Consensus 254 ~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g~~--------------------~~~~~-----~l~~~~e~~l 308 (429)
T 1wyd_A 254 KEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYN--------------------IKFGD-----DIGTPELRIL 308 (429)
T ss_dssp HHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSSCC--------------------CCTTS-----CCCHHHHHHH
T ss_pred hccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcCCC--------------------cccCc-----ccCcHHHHHH
Confidence 87543 3343433442 579999999999998752 221 11110 1111111222
Q ss_pred HhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccc
Q psy8863 312 EETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELS 391 (442)
Q Consensus 312 ~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~ 391 (442)
...++ .+|+||+|||...+|||++.+++||+++++||||++|+||+|||+|+|||++|+++|+++ + .++ .
T Consensus 309 ~~~~~---~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~----g--~~~-~ 378 (429)
T 1wyd_A 309 NEELK---EDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKK----G--LKP-E 378 (429)
T ss_dssp HHHHC---CSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHT----T--CCG-G
T ss_pred HHHhc---cCCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHc----C--CCh-H
Confidence 22222 269999999999999987766588999999999999999999999999999999999875 2 232 1
Q ss_pred cCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 392 SYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 392 ~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
.++|||+|++||+|||||||||+|||+|+++|.+|||||++|||+++.
T Consensus 379 --~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~ 426 (429)
T 1wyd_A 379 --SFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKR 426 (429)
T ss_dssp --GGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTB
T ss_pred --HHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCC
Confidence 248999999999999999999999999999999999999999999863
No 13
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=4e-92 Score=722.72 Aligned_cols=393 Identities=21% Similarity=0.318 Sum_probs=337.6
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC--ceeEEEEeEEEEEec
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT--GELSIKVSSLKLITK 78 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~~ 78 (442)
+++|.+||++|++|||++ +.||||++++..+++.|+.++.|+.||+|.|+|+|.++++ |++||.|++++||++
T Consensus 26 ~~~R~~g~~~F~~lrD~~-----g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~ 100 (434)
T 1x54_A 26 YTNMRVGKKIFLWIRDST-----GIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQA 100 (434)
T ss_dssp EEEEEETTEEEEEEEETT-----EEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEEEEEEEEEEEEC
T ss_pred EEEecCCCeEEEEEEECC-----EEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeec
Confidence 368999999999999999 9999999876666677888889999999999999999876 489999999999999
Q ss_pred cCCCCCc--ccccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeec
Q psy8863 79 SLRPLPN--KFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITH 156 (442)
Q Consensus 79 ~~~~lP~--~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~ 156 (442)
| .++|+ ... ..+.++|+++||||+| ++..++++++||.+++++|+||.++||+||+||+|+++.+++++++|.|
T Consensus 101 ~-~~~P~~~~~~-~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~- 176 (434)
T 1x54_A 101 V-SEFPIPENPE-QASPELLLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL- 176 (434)
T ss_dssp C-SCCSSCSSGG-GSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEE-
T ss_pred C-CCCCCccccc-CCCHHHhhhceeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEE-
Confidence 9 78997 433 3678999999999998 9999999999999999999999999999999999998766666688987
Q ss_pred cCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHh
Q psy8863 157 HNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDC 235 (442)
Q Consensus 157 ~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~ 235 (442)
+++++++||+||||+|+|+ +++|++|||+||||||+|++++ ||+|||||||+|++|.+++|+|+++|+|++++++++
T Consensus 177 -~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v 254 (434)
T 1x54_A 177 -KYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRT 254 (434)
T ss_dssp -EETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred -eecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999 6788999999999999999987 999999999999999999999999999999999999
Q ss_pred hcCce--eecCCcccc----cCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHH
Q psy8863 236 IGTTK--IDYQGRLLD----FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLM 309 (442)
Q Consensus 236 ~~~~~--~~~~~~~~~----~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 309 (442)
.+++. +++.+..++ ++.||+|+||.||++++.+ .|++...+ .++...
T Consensus 255 ~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~-------------------~g~~~~~~-----~dl~~~--- 307 (434)
T 1x54_A 255 LELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQS-------------------KGVNVEWG-----DDLGAD--- 307 (434)
T ss_dssp HHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHH-------------------TTCCCCTT-----CCCCHH---
T ss_pred hhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHh-------------------cCCCcccC-----CccChH---
Confidence 87542 444444332 3569999999999998752 12221111 111111
Q ss_pred HHHhhhhcCCCCcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEc-CE-EeeccccccCCHHHHHHHHHhhHHHhhccC
Q psy8863 310 LFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFII-GN-EIANGFSELNDPEEQSVRFKNQIDLKNEIN 387 (442)
Q Consensus 310 ~~~~~~e~~~~~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~-G~-Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~ 387 (442)
.+.++...+.+|+||+|||...+|||++.+++||+++++|||+++ |+ ||+|||+|+|||++|+++|+++ + .
T Consensus 308 -~e~~l~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~----g--~ 380 (434)
T 1x54_A 308 -EERVLTEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEE----G--M 380 (434)
T ss_dssp -HHHHHHTTCSSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHT----T--C
T ss_pred -HHHHHHHHhCCcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHc----C--C
Confidence 233455556789999999999999987666588999999999999 86 9999999999999999999876 2 2
Q ss_pred CccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 388 GELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 388 ~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
++ . .++|||+|++||+|||||||||+|||+|+++|.+|||||++|||+++.
T Consensus 381 ~~-~--~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~ 431 (434)
T 1x54_A 381 DP-K--DYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPAR 431 (434)
T ss_dssp CG-G--GGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTB
T ss_pred Ch-H--HHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCC
Confidence 32 1 248999999999999999999999999999999999999999999863
No 14
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=1.1e-91 Score=716.38 Aligned_cols=385 Identities=22% Similarity=0.395 Sum_probs=279.4
Q ss_pred CcccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCC-CCcEEEEEEEEeecCC--ceeEEEEeEEEEEe
Q psy8863 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYD-IGDIIGAKGTLFKTNT--GELSIKVSSLKLIT 77 (442)
Q Consensus 1 ~~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~-~gs~V~V~G~v~~~~~--~~~el~~~~i~vl~ 77 (442)
+++|.+||++|++|||++ +.||||+++ +.|+ .||+|.|+|+|.++++ |++||.|++++||+
T Consensus 23 ~~~R~~g~~~F~~lrD~~-----g~iQ~v~~~-----------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~ 86 (422)
T 1n9w_A 23 HWRRDLGRIQFLLLRDRS-----GVVQVVTGG-----------LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLS 86 (422)
T ss_dssp EEEEECSSEEEEEEEETT-----EEEEEEEES-----------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEE
T ss_pred EEEecCCCeEEEEEEECC-----EEEEEEEEc-----------cccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEec
Confidence 368999999999999999 999999975 4689 9999999999998876 59999999999999
Q ss_pred ccCCCCCcccc---cCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecCCCCCCCCcee
Q psy8863 78 KSLRPLPNKFQ---KLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFI 154 (442)
Q Consensus 78 ~~~~~lP~~~~---~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~ 154 (442)
+|..++|+... +..+.++|+++||||+| ++..++++++||.+++++|+||.++||+||+||+|+++.+++++++|.
T Consensus 87 ~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~ 165 (422)
T 1n9w_A 87 PALEPTPVEIPKEEWRANPDTLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFG 165 (422)
T ss_dssp CCCSCCC-----------------CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC---------------
T ss_pred cCCcCCCCCccccccCCCHHHHhhhhHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEE
Confidence 99888886443 44678999999999998 999999999999999999999999999999999999765555567887
Q ss_pred eccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCC-CCCCccchhhhhhccC-CHHHHHHHHHHHHHHHH
Q psy8863 155 THHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP-RHNPEFTMIEFYAAYT-NYIWLMKFTEKMIKKII 232 (442)
Q Consensus 155 ~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~-rHl~EFtmlE~e~~~~-~~~dl~~~~e~li~~i~ 232 (442)
+ +++++++||+||||+|+|+++ +|++|||+||||||+|++++ ||+|||||||+|++|+ |++|+|+++|+|+++++
T Consensus 166 ~--~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~ 242 (422)
T 1n9w_A 166 V--DYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEML 242 (422)
T ss_dssp ---------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHH
T ss_pred E--eeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHH
Confidence 7 478899999999999999987 78999999999999999986 9999999999999999 99999999999999999
Q ss_pred HHhhcCc--eeecCCcccccC-CCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHH
Q psy8863 233 MDCIGTT--KIDYQGRLLDFS-KSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLM 309 (442)
Q Consensus 233 ~~~~~~~--~~~~~~~~~~~~-~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 309 (442)
+++.+++ .+++.+..+++. .||+|+||.||++.+.. . | ....++ ++.....+
T Consensus 243 ~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~-~------------------~-~~~~~~-----dl~~~~e~ 297 (422)
T 1n9w_A 243 EEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKE-E------------------L-GYPVGQ-----DLSEEAER 297 (422)
T ss_dssp HHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHH-T------------------S-CCCCCS-----SCCHHHHH
T ss_pred HHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHh-c------------------C-Cccccc-----ccCcHHHH
Confidence 9998754 244444444433 79999999999998752 1 1 011110 11111222
Q ss_pred HHHhhhhcCCC-CcEEEEcCCCCCCCCCcccCCCCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCC
Q psy8863 310 LFEETTETKLW-NPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEING 388 (442)
Q Consensus 310 ~~~~~~e~~~~-~p~~v~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~ 388 (442)
+....+++.++ +|+||+|||...+|||++.+ ++ +++++|||+++|+||+|||+|+|||++|+++|+++ |.+
T Consensus 298 ~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~-~d-~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~------g~~ 369 (422)
T 1n9w_A 298 LLGEYAKERWGSDWLFVTRYPRSVRPFYTYPE-ED-GTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAK------GMD 369 (422)
T ss_dssp HHHHHHHHHTCCSEEEEECCBGGGSCTTBCBC-TT-SBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHT------TCC
T ss_pred HHHHHHHhhhCCceEEEECCChhhCcCcCCCC-CC-CEEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHc------CCC
Confidence 23333444443 69999999999999999987 44 89999999999999999999999999999999876 223
Q ss_pred ccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 389 ELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 389 e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
+ . .++|||+|++||+|||||||||+|||+|+++|.+|||||++|||+++.
T Consensus 370 ~-~--~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~ 419 (422)
T 1n9w_A 370 P-E--AFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHR 419 (422)
T ss_dssp G-G--GGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC-----
T ss_pred H-H--HHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCC
Confidence 2 1 248999999999999999999999999999999999999999999853
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-85 Score=689.15 Aligned_cols=408 Identities=23% Similarity=0.425 Sum_probs=336.0
Q ss_pred cccccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec---------CCceeEEEEeE
Q psy8863 2 LKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT---------NTGELSIKVSS 72 (442)
Q Consensus 2 ~~R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~---------~~~~~el~~~~ 72 (442)
++|.+ +|++|||++ +.||||++++..+++.++.++.|+.||+|.|+|+|.++ ++|++||.+++
T Consensus 35 ~~R~~---~Fi~LrD~~-----g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~ 106 (617)
T 4ah6_A 35 YRRQN---TFLVLRDFD-----GLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKT 106 (617)
T ss_dssp CCCTT---TEEEEECSS-----CEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEE
T ss_pred eecCe---EEEEEEeCC-----cCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeE
Confidence 45643 699999999 99999999876666778888899999999999999863 35799999999
Q ss_pred EEEEeccCCCCCccc--ccCCchhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHhh-hCCcEEecCceee-cCCCCC
Q psy8863 73 LKLITKSLRPLPNKF--QKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFME-KNDFMEVETPILH-NKPGGA 148 (442)
Q Consensus 73 i~vl~~~~~~lP~~~--~~~~~~~~r~~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~-~~gF~EV~TPiL~-~~~~g~ 148 (442)
++||++|. ++|++. ++..++++|+++||||+| ++..+++|++||++++++|+||. ++||+||+||+|+ ++|+||
T Consensus 107 i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR-~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA 184 (617)
T 4ah6_A 107 AELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLR-SFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA 184 (617)
T ss_dssp EEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSS
T ss_pred EEEeecCC-CCCcccccccccChhhhccceeeeec-chHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCC
Confidence 99999998 888864 445678899999999998 57899999999999999999996 7999999999998 468887
Q ss_pred CCCceeeccCCCCcceeeecCHHHHHHHHHhccCCceEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHH
Q psy8863 149 IAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228 (442)
Q Consensus 149 ~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li 228 (442)
++|.++++..++.+||+||||+|+|++|++|++||||||||||||+++++|+||||||||||+|+|++|+|+++|+|+
T Consensus 185 --~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~ 262 (617)
T 4ah6_A 185 --KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 262 (617)
T ss_dssp --CCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred --cCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeecCCCHHHHHHHHHHHH
Confidence 579888877889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceeecCCcccccCCCccceeHHHHHHHHCCCC-------CCcccC-------------------------
Q psy8863 229 KKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQY-------NEIDLQ------------------------- 276 (442)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~~~~~~-------~~~~~~------------------------- 276 (442)
+++++.+. .+++.||+||||.||+.+|+++. ...|++
T Consensus 263 ~~~~~~~~-----------~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI 331 (617)
T 4ah6_A 263 QYSWPNDK-----------DPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAI 331 (617)
T ss_dssp HHHSCSSS-----------CCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEE
T ss_pred HHHHHHhc-----------CccCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEE
Confidence 99876432 24578999999999999998742 111111
Q ss_pred ------------CHHHHHHHHHh-cCCC------C---------------------------Cccccc--c-------cc
Q psy8863 277 ------------NKLFLKSELKK-INPK------F---------------------------NQKKIL--N-------NL 301 (442)
Q Consensus 277 ------------~~~~l~~~~~~-~~~~------~---------------------------~~~~~~--~-------~~ 301 (442)
..+.+.++++. .|.. . ++++.+ . ..
T Consensus 332 ~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~ 411 (617)
T 4ah6_A 332 CIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACS 411 (617)
T ss_dssp EEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHH
T ss_pred EcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHH
Confidence 13555565655 3321 0 011110 0 12
Q ss_pred cHHHHHHHHHHhhh-------hcCCCCcEEEEcCCCC-------------CCCCCcccCCCC-------C--ceeeEEEE
Q psy8863 302 KKDILQLMLFEETT-------ETKLWNPTYITNYPTE-------------ISPLARKSNIEN-------N--NITERFEL 352 (442)
Q Consensus 302 ~~g~l~~~~~~~~~-------e~~~~~p~~v~~~P~~-------------~~pf~~~~~~~~-------~--~~~~~fdl 352 (442)
.+|.++.++.+.+. .+....++||+|||.. ..||+++.. +| | -.+++|||
T Consensus 412 ~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~-~d~~~l~~~p~~~~a~~ydl 490 (617)
T 4ah6_A 412 LLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHP-SDIHLLYTEPKKARSQHYDL 490 (617)
T ss_dssp HHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCC-TTSTHHHHSTTSSBCCCEEE
T ss_pred HHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCCh-hhHHHhhcChhhhhhceEEE
Confidence 47888888877652 2333479999999985 149998875 32 2 35899999
Q ss_pred EEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCCCCcccc
Q psy8863 353 FIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDV 432 (442)
Q Consensus 353 ~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~~~Irdv 432 (442)
++||+||+|||+|+||++.|+++|++.+. .++ +.++|||+|++||+|||||||+|+|||+|+++|.+|||||
T Consensus 491 v~~g~El~~gs~ri~~~~~q~~~f~~~~~-----~~~---~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdv 562 (617)
T 4ah6_A 491 VLNGNEIGGGSIRIHNAELQRYILATLLK-----EDV---KMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDV 562 (617)
T ss_dssp EETTEEEEEEECCCCSHHHHHHHHHHHCS-----STH---HHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGS
T ss_pred EECCEEEeeeeEEcCCHHHHHHHHHHhhc-----cch---hhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheE
Confidence 99999999999999999999999985532 222 2458999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q psy8863 433 ILFPHLRNE 441 (442)
Q Consensus 433 ~~FPr~~~~ 441 (442)
|+||++...
T Consensus 563 i~fP~~~~~ 571 (617)
T 4ah6_A 563 IAFPKSFRG 571 (617)
T ss_dssp SSSCCCSSS
T ss_pred EecCCCCCc
Confidence 999998653
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=6.4e-81 Score=620.99 Aligned_cols=305 Identities=31% Similarity=0.538 Sum_probs=254.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEecCceeec-CCCCCCCCceeeccC----CCCcceeeecCHHHHHHHHHhccCCc
Q psy8863 110 TRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN-KPGGAIAKPFITHHN----SLNMKMFLRIAPELYLKRLIIGGFNK 184 (442)
Q Consensus 110 ~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~-~~~g~~~~~f~~~~~----~~~~~~~L~~Spql~lk~ll~~g~~r 184 (442)
.+++|++||+++++||+||.++||+||+||+|++ +++|+++++|.|+++ ..+.++||+||||+|||++|++|++|
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~r 111 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGP 111 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCc
Confidence 6789999999999999999999999999999996 466678899998532 12378999999999999999999999
Q ss_pred eEEEecccccCCCCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCcccccCCCccceeHHHHHH
Q psy8863 185 IFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIK 264 (442)
Q Consensus 185 vf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~ 264 (442)
|||||||||||++++||+|||||||||++|+|++|+|+++|+||+++++ ..||+|+||.||++
T Consensus 112 vyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-----------------~~~~~rity~ea~~ 174 (345)
T 3a5y_A 112 VFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----------------CPAAESLSYQQAFL 174 (345)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-----------------CCCCEEEEHHHHHH
T ss_pred EEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-----------------CCCCcEeeHHHHHH
Confidence 9999999999999889999999999999999999999999999999976 13899999999999
Q ss_pred HHCCCCCCcccCCHHHHHHHHHhcCCC-CCcccccccccHHHHHHHHHHhhhhcCC--CCcEEEEcCCCCCCCCCcccCC
Q psy8863 265 KYTPQYNEIDLQNKLFLKSELKKINPK-FNQKKILNNLKKDILQLMLFEETTETKL--WNPTYITNYPTEISPLARKSNI 341 (442)
Q Consensus 265 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~e~~~--~~p~~v~~~P~~~~pf~~~~~~ 341 (442)
+|. |+++.. .+.+++.+.+++.|+. +..+ .++++++...++...+++++ .+|+||+|||...+||++.++
T Consensus 175 ~~~-g~d~~~-~~~~~l~~~~~~~g~~~~~~~----~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~~~~~~- 247 (345)
T 3a5y_A 175 RYL-EIDPLS-ADKTQLREVAAKLDLSNVADT----EEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIST- 247 (345)
T ss_dssp HHT-CCCTTC-CC----------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTTBCBCS-
T ss_pred HHh-CCCCCC-CCHHHHHHHHHHcCCcccCCC----cCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChhhCCCC-
Confidence 997 676554 3566777777777765 4331 14677888888888999998 479999999999999988776
Q ss_pred CCCceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHH
Q psy8863 342 ENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIM 421 (442)
Q Consensus 342 ~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m 421 (442)
++++++++|||+++|+||+|||+|+||+++|+++|+++...+...+.+ ..++|+|||+|++||+|||||||||+|||+|
T Consensus 248 ~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~-~~~~d~~yl~al~yG~PPhgG~glGiDRLvm 326 (345)
T 3a5y_A 248 EDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLP-QHPIDQNLIEALKVGMPDCSGVALGVDRLVM 326 (345)
T ss_dssp SCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCC-CCCCCHHHHHHHHHCCCSEEEEEEEHHHHHH
T ss_pred CCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHhcCCCCCcEEEEcHHHHHH
Confidence 888999999999999999999999999999999999987765443333 4557889999999999999999999999999
Q ss_pred HHcCCCCccccccCCCCC
Q psy8863 422 LLTNSKNIRDVILFPHLR 439 (442)
Q Consensus 422 ~l~g~~~Irdv~~FPr~~ 439 (442)
+++|.+||||||+|||++
T Consensus 327 ll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 327 LALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHTCSSGGGGSSSCTTT
T ss_pred HHcCCCcHheEecCCccc
Confidence 999999999999999986
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=2.4e-66 Score=507.63 Aligned_cols=275 Identities=22% Similarity=0.339 Sum_probs=237.8
Q ss_pred cccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC--------CCCCCCCceeeccCCCCcceeeecC
Q psy8863 98 RHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK--------PGGAIAKPFITHHNSLNMKMFLRIA 169 (442)
Q Consensus 98 ~~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~--------~~g~~~~~f~~~~~~~~~~~~L~~S 169 (442)
+|||+|+| ++ .++++++||.+++.+|+||.++||+||+||+|+++ .+++ +++|.+. ++++++||++|
T Consensus 1 ~~r~l~lr-~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~--~~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIIS-RE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVE--IYGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHT-SC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEE--ETTEEEEECSC
T ss_pred CchHHhhh-cc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEE--cCCCCEEeccC
Confidence 58999997 77 99999999999999999999999999999999987 4444 7899874 67899999999
Q ss_pred HHHHHHHHHhccCCceEEEecccccCC--CCC-CCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCceeecCCc
Q psy8863 170 PELYLKRLIIGGFNKIFEINKNFRNEG--ISP-RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGR 246 (442)
Q Consensus 170 pql~lk~ll~~g~~rvf~i~~~FR~E~--~~~-rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~~~~~~~ 246 (442)
||+|+|+++++|++|||+||||||+|+ +++ ||+|||||||+|+++.|++|+|+++|+|++++++.+.+.. +.
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~-----~~ 150 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT-----GR 150 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH-----SS
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh-----cc
Confidence 999999999999999999999999999 885 9999999999999999999999999999999998876411 11
Q ss_pred ccc-cCCCccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEE
Q psy8863 247 LLD-FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYI 325 (442)
Q Consensus 247 ~~~-~~~pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v 325 (442)
.++ +.. |+|+||.||++.++. .. + + .+...+|+||
T Consensus 151 ~i~~~~~-~~r~~y~ea~~~~g~------------------------~~-----e----r----------~~~~~~P~~v 186 (294)
T 1nnh_A 151 EFPKTKR-FEVFEYSEVLEEFGS------------------------DE-----K----A----------SQEMEEPFWI 186 (294)
T ss_dssp CCCCCSS-CEEEEHHHHHHHTSS------------------------HH-----H----H----------HHHCSSCEEE
T ss_pred ccccCCC-ceEeEHHHHHHHhCC------------------------hH-----h----h----------hhhcCCCEEE
Confidence 233 334 999999999986651 00 0 0 0113579999
Q ss_pred EcCCCCCCCCCcccCCCCCceeeEEEEEEc-CE-EeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHh
Q psy8863 326 TNYPTEISPLARKSNIENNNITERFELFII-GN-EIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALE 403 (442)
Q Consensus 326 ~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~-G~-Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k 403 (442)
+||| +|||++. |++++++||+|++ |+ ||+|||+|+|||++|.++++.. |.++ . .++||++|++
T Consensus 187 ~~~P---~pf~~~~---d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~------g~~~-~--~~~~~l~~l~ 251 (294)
T 1nnh_A 187 INIP---REFYDRE---VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKA------GLNE-D--SFRPYLEIAK 251 (294)
T ss_dssp ECCC---CCTTBCE---ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHT------TCCG-G--GGHHHHHHHH
T ss_pred EcCC---hHHhCCC---CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHc------CCCc-c--CHHHHHHHHh
Confidence 9999 9999987 6789999999999 96 9999999999999999988754 3333 2 2589999999
Q ss_pred cCCC-CccceehhHHHHHHHHcCCCCccccccCCCCCCC
Q psy8863 404 YGMP-PASGCGIGVDRLIMLLTNSKNIRDVILFPHLRNE 441 (442)
Q Consensus 404 ~G~p-p~~G~giGieRL~m~l~g~~~Irdv~~FPr~~~~ 441 (442)
||+| ||||||||+|||+|+++|++|||||++|||+++.
T Consensus 252 ~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~ 290 (294)
T 1nnh_A 252 AGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290 (294)
T ss_dssp TTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTS
T ss_pred cCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCc
Confidence 9999 9999999999999999999999999999999864
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.93 E-value=3.2e-26 Score=223.63 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=126.6
Q ss_pred cCCceeEEEEeEEEEEeccCCCCCcccccCCchhhhccccchhhhccHHHHHHHHH-----HHHHHHHHHHHhhhCCcEE
Q psy8863 61 TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKK-----RTQIISSIRHFMEKNDFME 135 (442)
Q Consensus 61 ~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~r~~~r~l~~~~~~~~~~~~~~-----rs~i~~~ir~ff~~~gF~E 135 (442)
+..|++||.|++++||++|..++|++.... ..++++||||+| ++..+++++. ++.+.+.+|++|.+.||.|
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~---~~~l~~r~l~~R-~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP---FRELESELLSRR-KKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC---HHHHHHHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh---hhhhhhHHHHhc-cchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 445899999999999999988899875431 348999999997 7899999999 9999999999999999999
Q ss_pred ecCceeecC-----CCCCCCCceeeccCCCCcceeee--cCHHHHHHHHHh----ccCCceEEEecccccCCCCCCCCCc
Q psy8863 136 VETPILHNK-----PGGAIAKPFITHHNSLNMKMFLR--IAPELYLKRLII----GGFNKIFEINKNFRNEGISPRHNPE 204 (442)
Q Consensus 136 V~TPiL~~~-----~~g~~~~~f~~~~~~~~~~~~L~--~Spql~lk~ll~----~g~~rvf~i~~~FR~E~~~~rHl~E 204 (442)
|.||+|++. .+.....++....++++...+|+ +||+++...... .+..|+||||+|||+|..+.+|++|
T Consensus 98 V~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~E 177 (290)
T 3qtc_A 98 IKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEE 177 (290)
T ss_dssp ECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSE
T ss_pred EECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcch
Confidence 999999964 11111112222234567789999 899999655432 5568999999999999888899999
Q ss_pred cchhhhhhccCC--HHHHHHHHHHHHHH
Q psy8863 205 FTMIEFYAAYTN--YIWLMKFTEKMIKK 230 (442)
Q Consensus 205 FtmlE~e~~~~~--~~dl~~~~e~li~~ 230 (442)
|||+|+++++.+ +.+++.+++++++.
T Consensus 178 f~ql~~~~~g~~~~f~elkg~le~ll~~ 205 (290)
T 3qtc_A 178 FTMLVFWQMGSGCTRENLESIITDFLNH 205 (290)
T ss_dssp EEEEEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred heEEEEEEEcCChHHHHHHHHHHHHHHH
Confidence 999999999863 66666665555443
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.90 E-value=9.3e-23 Score=194.58 Aligned_cols=272 Identities=15% Similarity=0.210 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHhh-----hCCcEEecCceeecCCCCC-----C-CCceeeccCCC-CcceeeecCHHHHHHHHHhc-
Q psy8863 114 FKKRTQIISSIRHFME-----KNDFMEVETPILHNKPGGA-----I-AKPFITHHNSL-NMKMFLRIAPELYLKRLIIG- 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~-----~~gF~EV~TPiL~~~~~g~-----~-~~~f~~~~~~~-~~~~~L~~Spql~lk~ll~~- 180 (442)
++-...+++.+++||. +.|+++|..|+++....|- + .++........ +..+-..+|--.|+++++..
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4566788999999999 9999999999999642221 1 23443333222 66788999999999988764
Q ss_pred cC---CceEEEecccccCC--CCCCCCCccchhhhhhccCCHHHHHHHHHHHHHHHHHHhhcCce---eecCCcccccCC
Q psy8863 181 GF---NKIFEINKNFRNEG--ISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK---IDYQGRLLDFSK 252 (442)
Q Consensus 181 g~---~rvf~i~~~FR~E~--~~~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i~~~~~~~~~---~~~~~~~~~~~~ 252 (442)
+| +++|+-.++.|.|+ .|.+|.-+|+|.|||.+....+..++.+++.++.|...+..... ..| +-...++.
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y-~l~p~Lp~ 163 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEF-GLAPFLPD 163 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCSCS
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcCCCC
Confidence 47 99999999999865 45799999999999999987788888888887777666654321 123 22233678
Q ss_pred CccceeHHHHHHHHCCCCCCcccCCHHHHHHHHHhcCCCCCcccccccccHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC
Q psy8863 253 SFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEI 332 (442)
Q Consensus 253 pf~rit~~ea~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~e~~~~~p~~v~~~P~~~ 332 (442)
++..||.+|+.++|- +.++ .+.+..+.+. .++|||++.|..+
T Consensus 164 ~i~fitsqeL~~~YP-~lt~----------------------------keRE~~i~ke---------~gaVFii~IG~~L 205 (330)
T 12as_A 164 QIHFVHSQELLSRYP-DLDA----------------------------KGRERAIAKD---------LGAVFLVGIGGKL 205 (330)
T ss_dssp SCEEEEHHHHHHHSS-SSCH----------------------------HHHHHHHHHH---------HSEEEEECCSSCC
T ss_pred ceEEEeHHHHHHHcC-CCCh----------------------------HHHHHHHHHh---------hCCEEEEecCCcc
Confidence 899999999999887 2211 0111111111 2589999988754
Q ss_pred C--CCCcccCCCCCcee---------eEEEEEE-c----C-EEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCc
Q psy8863 333 S--PLARKSNIENNNIT---------ERFELFI-I----G-NEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYD 395 (442)
Q Consensus 333 ~--pf~~~~~~~~~~~~---------~~fdl~~-~----G-~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d 395 (442)
+ -++....|+-+++. .+.||++ + + .||.+++.| .|++.+.++++ ..+. .+ .. .
T Consensus 206 ~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~----~~g~--~e-r~--~ 275 (330)
T 12as_A 206 SDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLA----LTGD--ED-RL--E 275 (330)
T ss_dssp SSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHH----HHTC--TT-GG--G
T ss_pred CCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHH----HcCC--Ch-hh--c
Confidence 3 24555556667777 9999999 4 4 799999999 88886655554 3333 22 22 2
Q ss_pred HHHHHHHhcC-CCCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 396 TDYIHALEYG-MPPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 396 ~~yl~~~k~G-~pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
-+|.+++..| +|++.|.|||.+||+|++|+..+|.+|.+
T Consensus 276 ~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 276 LEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp SHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred cHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeec
Confidence 4899999999 79999999999999999999999999976
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.81 E-value=1.2e-19 Score=176.45 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCC-ceeeccCCCCcceeeecC--HHHHH-HHHHhccCC---ce
Q psy8863 117 RTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAK-PFITHHNSLNMKMFLRIA--PELYL-KRLIIGGFN---KI 185 (442)
Q Consensus 117 rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~-~f~~~~~~~~~~~~L~~S--pql~l-k~ll~~g~~---rv 185 (442)
...+.+.+|++|...||.||.||.|++. ..|...+ .+....+..+...+|+++ |.+.. -+.....-+ |+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 4688999999999999999999999963 2222111 111112233456789854 55542 111212222 99
Q ss_pred EEEecccccCCCCCCCCCccchhhhhhccCC----HHHHHHHHHHHHH
Q psy8863 186 FEINKNFRNEGISPRHNPEFTMIEFYAAYTN----YIWLMKFTEKMIK 229 (442)
Q Consensus 186 f~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~----~~dl~~~~e~li~ 229 (442)
|++|+|||+|..+..|++||+|+|++..+.+ +.+++..++++++
T Consensus 153 feiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~ 200 (288)
T 3dsq_A 153 FEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLE 200 (288)
T ss_dssp EEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999988752 4444444444433
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.72 E-value=1.1e-16 Score=158.86 Aligned_cols=112 Identities=17% Similarity=0.230 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCC----ceeeccCCC----------Ccceeeec--CHHH
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAK----PFITHHNSL----------NMKMFLRI--APEL 172 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~----~f~~~~~~~----------~~~~~L~~--Spql 172 (442)
+.+++.||++|..+||.||.+|.+.+. |..+.++ .|......- .....||+ ||.+
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 457888999999999999999999752 2222222 222211110 13344665 4555
Q ss_pred HHHHHHhcc--CCceEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 173 YLKRLIIGG--FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 173 ~lk~ll~~g--~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
. ++|+.+ .-|+|++|+|||+|+.+.+|+|||+|||+++++. |+.+++..++.+++.+
T Consensus 184 l--r~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 184 V--RYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp H--HHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred H--HHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 4 455543 3489999999999988889999999999999986 7899999988887765
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.62 E-value=5.5e-16 Score=151.17 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhcc----CCc
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG----FNK 184 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g----~~r 184 (442)
+.+.+.+|++|..+||.||++|.+.+. +....++... ..-+.+....||+|.--.+.++++.+ ..|
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~-d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~r 134 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQ-DSFYITDEILMRTHTSPVQARTMEKRNGQGPVK 134 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTT-TSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccC-CcEEEcCcceeeccCHHHHHHHHHhcCCCCCcc
Confidence 457888999999999999999999753 1111111110 01123355678988777777778777 679
Q ss_pred eEEEecccccCCCCCCCCCccchhhhhhcc--CCHHHHHHHHHHHHHHH
Q psy8863 185 IFEINKNFRNEGISPRHNPEFTMIEFYAAY--TNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 185 vf~i~~~FR~E~~~~rHl~EFtmlE~e~~~--~~~~dl~~~~e~li~~i 231 (442)
+||||+|||+|+.+.+|+|||+|||+++++ .|+.+++..++.+++.+
T Consensus 135 iFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 135 IICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999987778899999999999998 58999999988887765
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.55 E-value=6.6e-15 Score=144.45 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecC---------CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhccC--CceEE
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNK---------PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGF--NKIFE 187 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~---------~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g~--~rvf~ 187 (442)
.+.+.||++|...||.|+.+|.+.+. |.++.++... ...|.+....||++.--.+-+.|..+- -|+|+
T Consensus 111 ~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~-dt~~i~e~~vLRThtsp~~lr~l~~~~~pirife 189 (327)
T 3pco_A 111 RTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADH-DTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIA 189 (327)
T ss_dssp HHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHT-TCCBSSSSCEECSCTHHHHHHHHTTCCSSCCBCC
T ss_pred HHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhccc-ccEEeCCCceecccCCHHHHHHHHhCCCCeeEEe
Confidence 46788999999999999999999754 2222222111 112334556677664333344455443 39999
Q ss_pred EecccccCCCCCCCCCccchhhhhhcc--CCHHHHHHHHHHHHHHHH
Q psy8863 188 INKNFRNEGISPRHNPEFTMIEFYAAY--TNYIWLMKFTEKMIKKII 232 (442)
Q Consensus 188 i~~~FR~E~~~~rHl~EFtmlE~e~~~--~~~~dl~~~~e~li~~i~ 232 (442)
+|+|||.+ .+.+|+|+|+|+|+.+.. .++.++...++.+++.++
T Consensus 190 iGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 190 PGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp EECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred eccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 99999998 688999999999988774 378899998888877763
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.49 E-value=4.5e-14 Score=145.41 Aligned_cols=112 Identities=25% Similarity=0.264 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhhCCcEEecC-ceeecC---------CCCCCCCceeeccCCCC--------------------------
Q psy8863 118 TQIISSIRHFMEKNDFMEVET-PILHNK---------PGGAIAKPFITHHNSLN-------------------------- 161 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~T-PiL~~~---------~~g~~~~~f~~~~~~~~-------------------------- 161 (442)
+.+.+.||++|...||.||.| |.+.+. |..+.++..+.++ |..
T Consensus 228 ~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtf-yi~~P~~~~~~~e~~~~~v~~~He~g~~~ 306 (508)
T 3l4g_A 228 LKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTF-FLRDPAEALQLPMDYVQRVKRTHSQGGYG 306 (508)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSC-BBSTTCBCSCCCHHHHHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceE-EEcCccccccccHHHHHhhhhhhhccccC
Confidence 457788999999999999875 877752 5555544332110 111
Q ss_pred -------------cceeeecCHHHHHHHHHhc-------cCCceEEEecccccCCCCCCCCCccchhhhhhcc--CCHHH
Q psy8863 162 -------------MKMFLRIAPELYLKRLIIG-------GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAY--TNYIW 219 (442)
Q Consensus 162 -------------~~~~L~~Spql~lk~ll~~-------g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~--~~~~d 219 (442)
...-||++.--.+-+.|.. ..-|+|+||+|||+|..+.+|+|||+|+|+.++. .++.+
T Consensus 307 s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~d 386 (508)
T 3l4g_A 307 SQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGH 386 (508)
T ss_dssp BCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHH
T ss_pred CccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHH
Confidence 2356777643322222321 2358999999999999999999999999998764 37888
Q ss_pred HHHHHHHHHHH
Q psy8863 220 LMKFTEKMIKK 230 (442)
Q Consensus 220 l~~~~e~li~~ 230 (442)
++..++.+++.
T Consensus 387 LKg~Le~~l~~ 397 (508)
T 3l4g_A 387 LMGVLREFFTK 397 (508)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88877776544
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.17 E-value=1.4e-10 Score=117.73 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhC--------CcEEecC-ceeecC---------CCCCCCCceeeccCCCCcceeeecCHHHHHHHHHhc
Q psy8863 119 QIISSIRHFMEKN--------DFMEVET-PILHNK---------PGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180 (442)
Q Consensus 119 ~i~~~ir~ff~~~--------gF~EV~T-PiL~~~---------~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~ 180 (442)
.+.+.||++|... ||.|+.+ |.+.+. |..+.++... ...|.+...-||++.--+.-++|..
T Consensus 52 ~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~-Dtfyi~~~~vLRThts~~~~~~l~~ 130 (415)
T 3cmq_A 52 LIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKG-DNYYLNRTHMLRAHTSAHQWDLLHA 130 (415)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGG-GSCBSSSSEEECSSGGGGHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCccccc-ceEEecCCeEEcCCCcHHHHHHHHH
Confidence 3556677777776 8999999 666642 5555555532 3346677778887643343345667
Q ss_pred cCCceEEEecccccCCCCCCCCCccchhhhhhcc
Q psy8863 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAY 214 (442)
Q Consensus 181 g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~ 214 (442)
+..|+|++|.|||.+..++.|.|+|+|+|.-..|
T Consensus 131 ~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp TCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEE
T ss_pred CCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEE
Confidence 7789999999999999999999999999987665
No 26
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.85 E-value=1.8e-08 Score=104.35 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=48.3
Q ss_pred eeeecC--HHHHHHHHH--hc--cCCceEEEecccccCCC-CCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 164 MFLRIA--PELYLKRLI--IG--GFNKIFEINKNFRNEGI-SPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 164 ~~L~~S--pql~lk~ll--~~--g~~rvf~i~~~FR~E~~-~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
..||+| |.+..+.-. .. .--|+|++|+|||.+.. +.+|.+||+|++.-+.+. |+.|++..++.+++.+
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457765 544433221 11 12489999999998775 678999999999998875 6888888777775543
No 27
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.82 E-value=3.9e-08 Score=101.30 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC---C--CCCC--CCceeeccCCCCcceeeecCHHHHHHHHHhcc-----
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK---P--GGAI--AKPFITHHNSLNMKMFLRIAPELYLKRLIIGG----- 181 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~---~--~g~~--~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g----- 181 (442)
.+++..+.+.+|+.|...||.||.||++... . .|.. -+.|.. .+.-|..+-|+--.-...-++++..
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 121 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNF-ITKGGHRVALRPEMTPSLARLLLGKGRSLL 121 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEE-ECSSSCEEEECSCSHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEE-EcCCCCEEecCCcCHHHHHHHHHhcCcccC
Confidence 3678899999999999999999999999853 1 1221 123322 1234556667654322233333322
Q ss_pred -CCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 182 -FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 182 -~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
.-|.|++|+|||.|....-+.-||+|+++|..+.+
T Consensus 122 ~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 122 LPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp SSEEEEECCEEECCCC-----CCEEEEEEEEEESCC
T ss_pred CCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCC
Confidence 45899999999999887778999999999998763
No 28
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.80 E-value=2e-08 Score=104.00 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=40.2
Q ss_pred CceEEEecccccCCC-CCCCCCccchhhhhhccC--CHHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEGI-SPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKK 230 (442)
Q Consensus 183 ~rvf~i~~~FR~E~~-~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~ 230 (442)
-|+|++|+|||.|.. +..|.+||+|+++.+.+. ++.+++..++.+++.
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~ 256 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQ 256 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 389999999999877 778999999999999884 677888777776554
No 29
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.69 E-value=5.8e-08 Score=101.26 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=49.2
Q ss_pred eeeecC--HHHHHHHH-H-h--ccCCceEEEecccccCCC-CCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 164 MFLRIA--PELYLKRL-I-I--GGFNKIFEINKNFRNEGI-SPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 164 ~~L~~S--pql~lk~l-l-~--~g~~rvf~i~~~FR~E~~-~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
..||+| |.+..+.- + . ..--|+|++|+|||++.. +.+|.+||+|++.-+.+. |+.|++..++.+++.+
T Consensus 200 sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457765 54443322 1 2 123489999999998776 778999999999998874 6888888877776553
No 30
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.68 E-value=6.2e-08 Score=101.17 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=49.2
Q ss_pred eeeecC--HHHHHHHH-H-h--ccCCceEEEecccccCCC-CCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 164 MFLRIA--PELYLKRL-I-I--GGFNKIFEINKNFRNEGI-SPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 164 ~~L~~S--pql~lk~l-l-~--~g~~rvf~i~~~FR~E~~-~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
..||+| |.+..+.- + . ..--|+|++|+|||++.. +.+|.+||+|++.-+.+. |+.|++..++.+++.+
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457765 54443322 1 2 123489999999998776 778999999999998874 6888888877776553
No 31
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.68 E-value=6.3e-08 Score=101.23 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=49.2
Q ss_pred eeeecC--HHHHHHHH-H-h--ccCCceEEEecccccCCC-CCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 164 MFLRIA--PELYLKRL-I-I--GGFNKIFEINKNFRNEGI-SPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 164 ~~L~~S--pql~lk~l-l-~--~g~~rvf~i~~~FR~E~~-~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
..||+| |.+..+.- + . ..--|+|++|+|||++.. +.+|.+||+|++.-+.+. |+.|++..++.+++.+
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457765 54443322 1 2 123489999999998776 778999999999998874 6888888877776553
No 32
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.66 E-value=7.3e-08 Score=100.97 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=49.1
Q ss_pred eeeecC--HHHHHHHH-H-h--ccCCceEEEecccccCCC-CCCCCCccchhhhhhccC--CHHHHHHHHHHHHHHH
Q psy8863 164 MFLRIA--PELYLKRL-I-I--GGFNKIFEINKNFRNEGI-SPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKKI 231 (442)
Q Consensus 164 ~~L~~S--pql~lk~l-l-~--~g~~rvf~i~~~FR~E~~-~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~i 231 (442)
..||+| |.+..+.- + . ..--|+|++|+|||++.. +.+|.+||+|++.-+.+. |+.|++..++.+++.+
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457765 54443322 1 2 123489999999998776 778999999999998874 6888888877776553
No 33
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.33 E-value=3.1e-06 Score=83.94 Aligned_cols=103 Identities=20% Similarity=0.137 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----C--CCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhc---
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----P--GGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIG--- 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~--~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~--- 180 (442)
.+++..+.+.+|+.|.+.||.||.||++... . +|. ..+.|.. .+.-++.+.|+--.-...-++++.
T Consensus 36 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~~~ 114 (344)
T 1z7m_A 36 VKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQF-IKHEGQSITLRYDFTLPLVRLYSQIKD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEE-ECTTCCEEEECCCSHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEE-ECCCCCEEecCCCCcHHHHHHHHhcCC
Confidence 4678899999999999999999999999853 1 121 1123322 133456677775433333333332
Q ss_pred -cCCceEEEecccccCCCCCCCCCccchhhhhhccCCH
Q psy8863 181 -GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNY 217 (442)
Q Consensus 181 -g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~~ 217 (442)
..-|.|++|+|||.|..+.-|.-||+|+++|..+.+-
T Consensus 115 ~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp CCCEEEEEEEECCCCCC-------CCEEEEEEEESSCH
T ss_pred CCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCC
Confidence 2359999999999998777789999999999988753
No 34
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.29 E-value=5.6e-07 Score=91.18 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhcc---
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG--- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g--- 181 (442)
-.+++..+.+.+|+.|.+.||.||.||+|.+. ..|. .-..|. .+.-+..++|+-..+...-++++..
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~--~d~~~~~~~LrP~~~~~~~~~~~~~~~s 106 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLKS 106 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE--EEETTEEEEECSCSHHHHHHHHTSSCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe--EecCCceEEEcCCCCHHHHHHHHhhhhh
Confidence 35778899999999999999999999999964 2232 112232 2234677889876665554444322
Q ss_pred ----CCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHH
Q psy8863 182 ----FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228 (442)
Q Consensus 182 ----~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li 228 (442)
.-|+|++|+|||+|..+. -+..||+|.|+|. |.+.++.....++++
T Consensus 107 ~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~e~i 160 (401)
T 1evl_A 107 YRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCI 160 (401)
T ss_dssp GGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHH
T ss_pred hhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHHHHHHH
Confidence 249999999999998732 3789999999995 445444444333333
No 35
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.27 E-value=1.1e-06 Score=90.71 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCH-----HHHHHHHHh
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAP-----ELYLKRLII 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Sp-----ql~lk~ll~ 179 (442)
-.+++..+.+.+|+.|.+.||.||.||++.+. ..|. .-+.|.. .+..++.++|+-.. .++...+..
T Consensus 66 g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~-~d~~~~~~~LrPt~ee~t~~i~r~~~~s 144 (458)
T 2i4l_A 66 GHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRI-ADRHKRELLYGPTNEEMITEIFRAYIKS 144 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEE-ECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEE-EeCCCCeEEECCCChHHHHHHHHHHHhh
Confidence 46789999999999999999999999999963 1222 1122322 12346778887632 222221111
Q ss_pred --ccCCceEEEecccccCCCC-CC--CCCccchhhhhhccCCHHHHHHHHHHH
Q psy8863 180 --GGFNKIFEINKNFRNEGIS-PR--HNPEFTMIEFYAAYTNYIWLMKFTEKM 227 (442)
Q Consensus 180 --~g~~rvf~i~~~FR~E~~~-~r--Hl~EFtmlE~e~~~~~~~dl~~~~e~l 227 (442)
.-.-|+|+||+|||+|... .- +..||+|.|+|....+..+.-..+..+
T Consensus 145 ~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 145 YKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp GGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 1135999999999999432 23 789999999999987766554444433
No 36
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.26 E-value=9.7e-07 Score=89.87 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CC--CCC----CCceeeccCCCCcceeeecCHHHHHHHHHh---
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PG--GAI----AKPFITHHNSLNMKMFLRIAPELYLKRLII--- 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~--g~~----~~~f~~~~~~~~~~~~L~~Spql~lk~ll~--- 179 (442)
-.+++..+.+.+++.|.+.||.||.||+|.+. .+ |+. -+.|.. .+..+..++|+--.....-++++
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~-~D~~g~~~~Lrp~~t~~~~r~~~~~~ 93 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTF-KDKGDRSITLRPEGTAAVVRSYIEHK 93 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEE-CHHHHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEE-EcCCCCEEEeCCCChHHHHHHHHhcc
Confidence 35788899999999999999999999999963 22 321 122221 11124567777543333333322
Q ss_pred -----ccCCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 180 -----GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 180 -----~g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
...-|+|++|+|||+|..+.-|.-||+|+|+|....+
T Consensus 94 ~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 94 MQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp GGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC
T ss_pred ccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCC
Confidence 1246999999999999776677899999999998875
No 37
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.20 E-value=4.7e-06 Score=85.23 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----C-CCCC--CCceeeccCCCCcceeeecCHHHHHHHHHhcc----
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----P-GGAI--AKPFITHHNSLNMKMFLRIAPELYLKRLIIGG---- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~-~g~~--~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g---- 181 (442)
-.+++..+.+.+|+-|.+.||.||.||++.+. . .|.. -+.|.. .+..|+.+.|+--.....-++++..
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~-~D~~g~~l~LrPd~t~~~aR~~~~~~~~~ 97 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSF-VDKGGREVTLIPEATPSTVRMVTSRKDLQ 97 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEE-ECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEE-ECCCCCEEEeCCCChHHHHHHHHhcCCCC
Confidence 34778899999999999999999999999964 2 2321 122322 1334566777754333333433322
Q ss_pred -CCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 182 -FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 182 -~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
.-|.|+||++||.|....-+.-||+|+++|..+.+
T Consensus 98 lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 98 RPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD 133 (434)
T ss_dssp SSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC
T ss_pred CCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCC
Confidence 35999999999999776667899999999999875
No 38
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=98.18 E-value=2.8e-06 Score=87.86 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccC-------CCCcceeeecCHHHHHHH
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHN-------SLNMKMFLRIAPELYLKR 176 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~-------~~~~~~~L~~Spql~lk~ 176 (442)
...+++.++++.+++.+.++||.||.||.|.+. ..|. ..+.|.+... -.+.++||.-..+..+-.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 356889999999999999999999999999853 1121 1123333211 013568888666665543
Q ss_pred HHhcc-------CCceEEEecccccCCCC----C---CCCCccchhhhhhccCCH-HHHHHHHHHHHH
Q psy8863 177 LIIGG-------FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTNY-IWLMKFTEKMIK 229 (442)
Q Consensus 177 ll~~g-------~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~~-~dl~~~~e~li~ 229 (442)
+.... .-|+|++++|||+|.+. + -+.-||+|.|.+..-..- ++..+..++++.
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~ 346 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIT 346 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHH
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHH
Confidence 32211 24899999999999852 1 477899999997432221 224454444443
No 39
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.18 E-value=5.1e-06 Score=83.26 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC---CCceeeccCCCCcceeeecCHHHHHHHHHh------c
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI---AKPFITHHNSLNMKMFLRIAPELYLKRLII------G 180 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~---~~~f~~~~~~~~~~~~L~~Spql~lk~ll~------~ 180 (442)
.+++..+.+.+|+.|.++||.||.||++... .+|.. .+.|.. .+.-++.+-|+--.-...-++++ .
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRL-FDGGGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBC-CCCSSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEE-ECCCCCEEEECCcCHHHHHHHHHhccccCC
Confidence 4678889999999999999999999999853 22211 122321 12335566676432222222222 2
Q ss_pred cCCceEEEecccccCCC------CCCCCCccchhhhhhccCC
Q psy8863 181 GFNKIFEINKNFRNEGI------SPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 181 g~~rvf~i~~~FR~E~~------~~rHl~EFtmlE~e~~~~~ 216 (442)
..-|.|++|+|||.|.. ..-|.-||+|+++|....+
T Consensus 116 ~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEE 157 (373)
T ss_dssp CCCEEEEEEEEEECC------------CEEEEEEEEEECSSC
T ss_pred CCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCC
Confidence 35799999999999987 5567889999999988764
No 40
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.16 E-value=5.3e-06 Score=83.92 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecCC-----CCC-CCCceeeccCCCCcceeeecCHHHHHHHHHhc------c
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNKP-----GGA-IAKPFITHHNSLNMKMFLRIAPELYLKRLIIG------G 181 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~-----~g~-~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~------g 181 (442)
.+++..+.+.+|+.|..+||.||.||++.... ++. ..+.|.. .+.-++.+-|+--.-...-++++. .
T Consensus 24 ~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 102 (400)
T 3od1_A 24 YKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKL-LDQQGNTLVLRPDMTAPIARLVASSLKDRAY 102 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEE-ECTTSCEEEECSCSHHHHHHHHHHHCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEE-ECCCCCEEEECCCCHHHHHHHHHhhcccCCC
Confidence 46788999999999999999999999997531 111 1122322 123355666764322222233332 2
Q ss_pred CCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 182 FNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 182 ~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
.-|.|++|+|||.|....-+.-||+|+++|..+.+
T Consensus 103 P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 103 PLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp CEEEEEEEEEECCCC---CCCSEEEEEEEEEESCC
T ss_pred CeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCC
Confidence 35999999999999877778999999999998864
No 41
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.15 E-value=4.5e-06 Score=86.33 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecCC-----CCC----CCCceeeccCC---CCcceeeecCHHH-----HHH
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNKP-----GGA----IAKPFITHHNS---LNMKMFLRIAPEL-----YLK 175 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~~-----~g~----~~~~f~~~~~~---~~~~~~L~~Spql-----~lk 175 (442)
-.+++..|.+.+|+.|.+.||.||.||++.+.. +|+ .-+.|...... .+.+++|+--.+. +.+
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 347788999999999999999999999999641 332 11222221100 1467888855442 332
Q ss_pred HHHh--ccCCceEEEecccccCCCCC--CCCCccchhhhhhccCCHHHHHHHHHHH
Q psy8863 176 RLII--GGFNKIFEINKNFRNEGISP--RHNPEFTMIEFYAAYTNYIWLMKFTEKM 227 (442)
Q Consensus 176 ~ll~--~g~~rvf~i~~~FR~E~~~~--rHl~EFtmlE~e~~~~~~~dl~~~~e~l 227 (442)
.+.+ .-.-|+|+||+|||+|..-. -+.-||+|.|++..+.+.++....+..+
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~ 178 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRM 178 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHH
Confidence 2111 11359999999999995432 4889999999999999877776666555
No 42
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.14 E-value=7e-06 Score=83.54 Aligned_cols=103 Identities=18% Similarity=0.277 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CC-CCC-----CCceeeccCCCCcceeeecCHHHHHHHHHh-c-
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PG-GAI-----AKPFITHHNSLNMKMFLRIAPELYLKRLII-G- 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~-g~~-----~~~f~~~~~~~~~~~~L~~Spql~lk~ll~-~- 180 (442)
-.+++..+.+.+|+-|.+.||.||.||++.+. .+ |.. -+.|.. .+..|+.+.|+--.....-++++ .
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~ar~~~~~~ 94 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTF-QDRGGRSLTLRPEGTAAMVRAYLEHG 94 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEE-ECCCCCEEeeCCcchHHHHHHHHhcc
Confidence 34678899999999999999999999999863 12 321 123322 13345667776432222222222 1
Q ss_pred -----cCCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 181 -----GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 181 -----g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
..-|.|+||++||.|....-+.-||+|.++|....+
T Consensus 95 ~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 95 MKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSE 135 (421)
T ss_pred ccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCC
Confidence 236999999999999776668899999999998865
No 43
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.12 E-value=6e-06 Score=84.09 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CC-CCC-----CCceeeccCCCCcceeeecCHHHHHHHHHh-c-
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PG-GAI-----AKPFITHHNSLNMKMFLRIAPELYLKRLII-G- 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~-g~~-----~~~f~~~~~~~~~~~~L~~Spql~lk~ll~-~- 180 (442)
-.+++..+.+.+|+-|.+.||.||.||++.+. .+ |.. -+.|.. .+..++.+-|+--.....-+.++ .
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~aR~~~~~~ 95 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTF-EDRNGDSLTLRPEGTAGCVRAGIEHG 95 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEE-ECTTSCEEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEE-EcCCCCEEEeCCCchHHHHHHHHhcc
Confidence 34678899999999999999999999999863 11 321 123432 13345667777533333323332 2
Q ss_pred ----cCCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 181 ----GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 181 ----g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
..-|.|+||++||.|....-+.-||+|+++|....+
T Consensus 96 ~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 96 LLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp CSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred cccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCC
Confidence 246999999999999777678899999999998875
No 44
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.11 E-value=3.1e-06 Score=86.18 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeeccC-CCCcceeeecCHHHHHHHHHhc-------
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHHN-SLNMKMFLRIAPELYLKRLIIG------- 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~-~~~~~~~L~~Spql~lk~ll~~------- 180 (442)
-.+++..+.+.+++.+.++||.||.||+|... ..|. ...|.-... ..+..+||+-..+..+-.+.+.
T Consensus 171 ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~-~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~ 249 (425)
T 2dq3_A 171 GARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQ-LPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEEN 249 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSC-TTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCC-CCcChhhheEecCCeEEEcCCCcHHHHHHHHhhcccccc
Confidence 55778999999999999999999999999963 1221 111211111 1256788875544443333221
Q ss_pred cCCceEEEecccccCCCC----C---CCCCccchhhhhhccCCHHHHHHHHHHHHH
Q psy8863 181 GFNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIK 229 (442)
Q Consensus 181 g~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~ 229 (442)
-.-|+|++|+|||+|.+. + -+..||+|+|.+.... -++..+..++++.
T Consensus 250 LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~-pe~s~~~~~e~i~ 304 (425)
T 2dq3_A 250 LPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH-PDTSYDELEKLVK 304 (425)
T ss_dssp CCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC-GGGHHHHHHHHHH
T ss_pred CCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECC-HHHHHHHHHHHHH
Confidence 145999999999999854 1 3788999999976443 2344444444443
No 45
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.11 E-value=6.2e-06 Score=87.32 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhc----
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIG---- 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~---- 180 (442)
-.+++..+.+.+|+.|.+.||.||.||+|.+. .+|+ .-+.|.. .+..+..++|+--.+...-++++.
T Consensus 46 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~-~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 46 ANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRL-KDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEE-ECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEE-ecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 45788999999999999999999999999964 2221 1122321 123457788875443322222221
Q ss_pred ---cCCceEEEecccccCCCCCC---CCCccchhhhhhccCCHHHHHHHHHH---HHHHHHHH
Q psy8863 181 ---GFNKIFEINKNFRNEGISPR---HNPEFTMIEFYAAYTNYIWLMKFTEK---MIKKIIMD 234 (442)
Q Consensus 181 ---g~~rvf~i~~~FR~E~~~~r---Hl~EFtmlE~e~~~~~~~dl~~~~e~---li~~i~~~ 234 (442)
-.-|+|++|+|||+|..... +.-||+|.|+|....+-.+....++. +...+++.
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~ 187 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFER 187 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 13499999999999987422 78999999999988866665555444 34444444
No 46
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=98.10 E-value=9.7e-06 Score=83.22 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhcc--
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG-- 181 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-- 181 (442)
...+++.++++.+++.+.++||.||.||.|.+. ..|. ..+.|.+... +.+.||.-..+..+-.++..-
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~pl~~l~~~ei~ 260 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--EDEKYLIATSEQPISAYHAGEWF 260 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET--TEEEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC--CCeEEEeccccHHHHHHHhcccc
Confidence 456889999999999999999999999999963 1221 1123333211 457888655555555444321
Q ss_pred -------CCceEEEecccccCCCC----C---CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 182 -------FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 182 -------~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
.-|+|++++|||+|... + -+.-||+|.|.+. |..-++..+..++++..
T Consensus 261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~ 322 (485)
T 3qne_A 261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGC 322 (485)
T ss_dssp SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHH
Confidence 24799999999999743 2 4778999999986 44445555555555443
No 47
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=98.07 E-value=5.4e-06 Score=85.59 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCC-----CCceeeccCCC-CcceeeecCHHHHHHHHHhc-
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAI-----AKPFITHHNSL-NMKMFLRIAPELYLKRLIIG- 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~-----~~~f~~~~~~~-~~~~~L~~Spql~lk~ll~~- 180 (442)
-.+++..+.+.+++.|.++||.||.||++... ..|.. -+.|.. .+.- +..+.|+--.....-++++.
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~-~D~~~g~~l~LRPd~t~~~ar~~~~~ 123 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSF-VDALNGENLTLRPENTAAVVRAAIEH 123 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEE-ECTTTCCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEE-ecCCCCCEEEeCcccHHHHHHHHHHc
Confidence 34778999999999999999999999999853 11331 123322 1233 56677875433333333332
Q ss_pred -----cCCceEEEecccccCCCCCCCCCccchhhhhhccCC
Q psy8863 181 -----GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 181 -----g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
..-|.|++|+|||.|....-+.-||||+++|....+
T Consensus 124 ~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 124 NMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFA 164 (467)
T ss_dssp TTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCC
T ss_pred ccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCC
Confidence 245999999999999887777889999999988763
No 48
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.05 E-value=4.1e-06 Score=89.94 Aligned_cols=102 Identities=18% Similarity=0.038 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC----CCceeeccCCCC-cceeeecCHHHHHHHHHhcc-
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI----AKPFITHHNSLN-MKMFLRIAPELYLKRLIIGG- 181 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~----~~~f~~~~~~~~-~~~~L~~Spql~lk~ll~~g- 181 (442)
.-.+++..+.+.+|+.|.+.||.||.||+|.+. .+|+. -..|.+ .+.-+ ..++|+--.....-++++..
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~-~d~~~~~~~~LrP~~~~~~~~~~~~~~ 347 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP-MQLDETESMVLRPMNCPHHMMIYANKP 347 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC-EEETTTEEEEECSSSHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCccee-EecCCCeEEEeCCCCCHHHHHHHHhhh
Confidence 346889999999999999999999999999964 22221 122221 11235 67888865444443444322
Q ss_pred ------CCceEEEecccccCCCCCC----CCCccchhhhhhcc
Q psy8863 182 ------FNKIFEINKNFRNEGISPR----HNPEFTMIEFYAAY 214 (442)
Q Consensus 182 ------~~rvf~i~~~FR~E~~~~r----Hl~EFtmlE~e~~~ 214 (442)
.-|+|+||+|||+|.+..+ +.-||||.|+|.-.
T Consensus 348 ~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~ 390 (645)
T 1nyr_A 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFV 390 (645)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEE
T ss_pred hhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEc
Confidence 2499999999999998643 67999999999844
No 49
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.04 E-value=6e-06 Score=85.23 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCC-C-ceeeccCC---------------CCcceeeecCHHH
Q psy8863 114 FKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIA-K-PFITHHNS---------------LNMKMFLRIAPEL 172 (442)
Q Consensus 114 ~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~-~-~f~~~~~~---------------~~~~~~L~~Spql 172 (442)
.++|..+.+.+++.|..+||.||.||++... .+|... + .|... +. -+..+-|+--.-.
T Consensus 26 ~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~-d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~ 104 (465)
T 3net_A 26 KRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLE-PILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEE-EEC----------------CCEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEe-cccccccccccccccCCCCCEEEeCCCChH
Confidence 4678899999999999999999999999642 223222 2 33321 21 1456667744332
Q ss_pred HHHHHHhc------cCCceEEEecccccCCCCCCCCCccchhhhhhccCC--HH----HHHHHHHHHHHH
Q psy8863 173 YLKRLIIG------GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTN--YI----WLMKFTEKMIKK 230 (442)
Q Consensus 173 ~lk~ll~~------g~~rvf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~~--~~----dl~~~~e~li~~ 230 (442)
..-++++. ..-|.|++|+|||.|....-|.-||+|+++|..+.+ .. +++.++.++++.
T Consensus 105 ~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~ 174 (465)
T 3net_A 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEA 174 (465)
T ss_dssp HHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHH
Confidence 22233222 234999999999999887778899999999988763 22 456665555544
No 50
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=98.03 E-value=1.1e-05 Score=84.02 Aligned_cols=116 Identities=12% Similarity=-0.009 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC---C--CCCCCCceeeccCC----C----CcceeeecCHHHHHHHHHh
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK---P--GGAIAKPFITHHNS----L----NMKMFLRIAPELYLKRLII 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~---~--~g~~~~~f~~~~~~----~----~~~~~L~~Spql~lk~ll~ 179 (442)
-.+++..|.+.+++.+.+.||.||.||+|.+. . .|+ ...|.-.... - +.+++|+--.+..+-.+++
T Consensus 60 G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh-~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~ 138 (519)
T 4hvc_A 60 AYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTH-VADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYA 138 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCS-CGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCC-cccccccceEEeccCCcccccceeeCCCCcHHHHHHHH
Confidence 45788999999999999999999999999853 2 332 2333211111 1 2357785443332222222
Q ss_pred c-------cCCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHH
Q psy8863 180 G-------GFNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIK 229 (442)
Q Consensus 180 ~-------g~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~ 229 (442)
. -.-|+|++|+|||.|..++ -+.-||+|.|.+..+++.++..+.++.++.
T Consensus 139 ~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~ 198 (519)
T 4hvc_A 139 KWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILD 198 (519)
T ss_dssp HHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHH
Confidence 1 1359999999999996543 478899999999999988888777776654
No 51
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.03 E-value=1.2e-05 Score=82.78 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCC----CCceeeccCC---CCcceeeecCHHHHHHHHHhc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAI----AKPFITHHNS---LNMKMFLRIAPELYLKRLIIG 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~----~~~f~~~~~~---~~~~~~L~~Spql~lk~ll~~ 180 (442)
-.+++..|.+.+|+.|.+.||.||.||++.+. ..|.. -+.|.+.... .+..++|+--.+...-++++.
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 35778999999999999999999999999963 23321 1223221110 156788886554443333332
Q ss_pred c-------CCceEEEecccccCCCCC---CCCCccc-hhhhhhccCCHHHHHHHHHHHHH
Q psy8863 181 G-------FNKIFEINKNFRNEGISP---RHNPEFT-MIEFYAAYTNYIWLMKFTEKMIK 229 (442)
Q Consensus 181 g-------~~rvf~i~~~FR~E~~~~---rHl~EFt-mlE~e~~~~~~~dl~~~~e~li~ 229 (442)
. .-|+|+||+|||+|..+. -+.-||+ |.|.+..+.+.++.....++++.
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 1 249999999999998733 3788999 99999999887776665444443
No 52
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.98 E-value=7.1e-06 Score=84.18 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeeccCC-CCcceeeecCHHHHHHHHHhcc------
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHHNS-LNMKMFLRIAPELYLKRLIIGG------ 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~~-~~~~~~L~~Spql~lk~ll~~g------ 181 (442)
-.+++..+.+.+++.+.++||.||.||.|.+. .+|. ...|.-.... -+..+||+-..+..+-.+....
T Consensus 192 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~-~~~f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~ 270 (455)
T 2dq0_A 192 IVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTS-FEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGKD 270 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSC-TTHHHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCC-CCCChHhhCeecCCcEEEcCcCcHHHHHHHHhCccCchh
Confidence 45778999999999999999999999999963 3332 2333211111 2457888866665554443311
Q ss_pred -CCceEEEecccccCCCC----C---CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 182 -FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 182 -~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
.-|+|++|+|||+|... + -+.-||+|.|++ .|.+-++..+..++++..
T Consensus 271 LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~ 326 (455)
T 2dq0_A 271 LPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRN 326 (455)
T ss_dssp CSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHH
T ss_pred CCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHH
Confidence 24999999999999852 1 378999999998 454446666666666544
No 53
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.96 E-value=6e-06 Score=88.50 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhcc---
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG--- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g--- 181 (442)
-.+++..+.+.+|+.+.+.||.||.||+|.+. ..|+ ....|. .+.-+..++|+--.+...-++++..
T Consensus 270 g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~--~d~~~~~~~LrP~~~~~~~~~~~~~~~s 347 (642)
T 1qf6_A 270 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLKS 347 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE--EEETTEEEEECSSSHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee--eecCCceEEecCCCCHHHHHHHHhhhhh
Confidence 46789999999999999999999999999964 2232 112333 2233567888865444433333322
Q ss_pred ----CCceEEEecccccCCCCC----CCCCccchhhhhhccCCHHHHHHHHHHHH
Q psy8863 182 ----FNKIFEINKNFRNEGISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228 (442)
Q Consensus 182 ----~~rvf~i~~~FR~E~~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li 228 (442)
.-|+|++|+|||+|.++. .+.-||||.|++.- .+.+++....++++
T Consensus 348 yr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f-~~~~~~~~e~~~~i 401 (642)
T 1qf6_A 348 YRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF-CTEEQIRDEVNGCI 401 (642)
T ss_dssp GGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEE-ECGGGHHHHHHHHH
T ss_pred ccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEE-cCHHHHHHHHHHHH
Confidence 249999999999999832 47899999999974 44444444443333
No 54
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.95 E-value=2.9e-05 Score=79.90 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCCC-ceeeccCCCCcceeeecCHHHHHHHHHhc---cCC
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIAK-PFITHHNSLNMKMFLRIAPELYLKRLIIG---GFN 183 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~~-~f~~~~~~~~~~~~L~~Spql~lk~ll~~---g~~ 183 (442)
-.+++..+.+.+|+.|..+||.||.||++... ..|...+ .|. -.+.-|+.+-|+--.-.-.-+.++. ..-
T Consensus 27 ~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~-f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~ 105 (464)
T 4g84_A 27 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYD-LKDQGGELLSLRYDLTVPFARYLAMNKLTNI 105 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCB-BCCCSSCCEEECSCSHHHHHHHHHHTTCSCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEE-EECCCCCEEEeCCcCcHHHHHHHHhcCCCCc
Confidence 34678899999999999999999999999752 1222111 221 1233456666764211111222322 235
Q ss_pred ceEEEecccccCCCC--CCCCCccchhhhhhccC
Q psy8863 184 KIFEINKNFRNEGIS--PRHNPEFTMIEFYAAYT 215 (442)
Q Consensus 184 rvf~i~~~FR~E~~~--~rHl~EFtmlE~e~~~~ 215 (442)
|.|++|++||.|... .-+.-||+|+++|..+.
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCC
Confidence 899999999999754 35788999999998874
No 55
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.95 E-value=6.5e-06 Score=84.72 Aligned_cols=118 Identities=15% Similarity=0.008 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHh-hhCCcEEecCceeecC----CCCCC----CCceeeccC-CCCcceeeecCHHHHHHHHHhcc-
Q psy8863 113 VFKKRTQIISSIRHFM-EKNDFMEVETPILHNK----PGGAI----AKPFITHHN-SLNMKMFLRIAPELYLKRLIIGG- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff-~~~gF~EV~TPiL~~~----~~g~~----~~~f~~~~~-~~~~~~~L~~Spql~lk~ll~~g- 181 (442)
-.+++..|.+.+++.+ .+.||.||.||+|.+. ..|.- -+.|.+... .-+..++|+--.+...-.+++..
T Consensus 63 g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~ 142 (460)
T 3uh0_A 63 GAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKD 142 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcc
Confidence 4578899999999999 9999999999999853 22321 122222110 02457888755444443434322
Q ss_pred ------CCceEEEecccccCCCC--C--CCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 182 ------FNKIFEINKNFRNEGIS--P--RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 182 ------~~rvf~i~~~FR~E~~~--~--rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
.-|+|++|+|||+|... . .+.-||+|.|++. |.+-++..+.+++++..+
T Consensus 143 ~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~ 201 (460)
T 3uh0_A 143 RSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLI 201 (460)
T ss_dssp CBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHH
Confidence 24899999999999875 2 4889999999996 454455555555554443
No 56
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.94 E-value=6.6e-06 Score=85.62 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC---C--CCC----CCCceeeccCC---CCcceeeecCHHHHHHHHHhc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK---P--GGA----IAKPFITHHNS---LNMKMFLRIAPELYLKRLIIG 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~---~--~g~----~~~~f~~~~~~---~~~~~~L~~Spql~lk~ll~~ 180 (442)
-.+++..|.+.+++.|.+ ||.||.||+|.+. . .|. .-+.|.+.... .+.+++|+--.+..+-.+++.
T Consensus 70 g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 148 (501)
T 1nj1_A 70 GFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHh
Confidence 446788899999999999 9999999999963 1 221 11233321110 145788886554443333321
Q ss_pred ------c-CCceEEEecccccCCCCC---CCCCccc-hhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 181 ------G-FNKIFEINKNFRNEGISP---RHNPEFT-MIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 181 ------g-~~rvf~i~~~FR~E~~~~---rHl~EFt-mlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
. .-|+|++|+|||+|..++ -+.-||+ |.|++..+.+.++..+.+++++..
T Consensus 149 ~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 149 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 1 249999999999998743 3788999 999999998888777776665543
No 57
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.94 E-value=1.6e-05 Score=80.89 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=84.1
Q ss_pred ccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCCCCceeeccCC-CCcceeeecCHHHH
Q psy8863 99 HRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAIAKPFITHHNS-LNMKMFLRIAPELY 173 (442)
Q Consensus 99 ~r~l~~~~~~~~~~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~~~~f~~~~~~-~~~~~~L~~Spql~ 173 (442)
.++.++. | .-.+++..+.+.+++.+.++||.||.||+|.+. ..|. ...|.-.... -+..++|+--.+..
T Consensus 156 ~G~~~~~--p---~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~-~~~f~~emy~~~d~~l~L~Pt~e~~ 229 (421)
T 1ses_A 156 SRSYALK--G---DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGH-FPAYRDQVWAIAETDLYLTGTAEVV 229 (421)
T ss_dssp SSCCCEE--T---HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTC-TTTTGGGSCBBTTSSEEECSSTHHH
T ss_pred CCeEEEC--c---HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCC-CCcCchhcEEEcCCeEEEeecCcHH
Confidence 4555553 2 345788999999999999999999999999863 2232 1222211111 14578888766665
Q ss_pred HHHHHhcc-------CCceEEEecccccCCCC----C---CCCCccchhhhhhccCC-HHHHHHHHHHHHHH
Q psy8863 174 LKRLIIGG-------FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTN-YIWLMKFTEKMIKK 230 (442)
Q Consensus 174 lk~ll~~g-------~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~-~~dl~~~~e~li~~ 230 (442)
+-.++... .-|+|++|+|||+|.++ + -+.-||+|+|++..... .++..+..++++..
T Consensus 230 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~ 301 (421)
T 1ses_A 230 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 301 (421)
T ss_dssp HHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHH
Confidence 55444321 34999999999999632 1 37899999998876655 46666666666544
No 58
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.93 E-value=2.2e-05 Score=82.02 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC-----CCCCCCC-ceeeccCCCCcceeeecCHHHHHHHHHhc---cCC
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK-----PGGAIAK-PFITHHNSLNMKMFLRIAPELYLKRLIIG---GFN 183 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~-----~~g~~~~-~f~~~~~~~~~~~~L~~Spql~lk~ll~~---g~~ 183 (442)
-.++|..+.+.+|+.|..+||.||.||++... ..|...+ .|. -.+.-|..+-|+--.-.-.-++++. ..-
T Consensus 80 ~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~-f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~ 158 (517)
T 4g85_A 80 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYD-LKDQGGELLSLRYDLTVPFARYLAMNKLTNI 158 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCB-BCCTTSCCEEECSCSHHHHHHHHHHTTCSCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEE-EECCCCCEEEeCCcCcHHHHHHHHhCCCCCc
Confidence 44788999999999999999999999999753 2222211 121 1233456666764211112222322 135
Q ss_pred ceEEEecccccCCCC--CCCCCccchhhhhhccC
Q psy8863 184 KIFEINKNFRNEGIS--PRHNPEFTMIEFYAAYT 215 (442)
Q Consensus 184 rvf~i~~~FR~E~~~--~rHl~EFtmlE~e~~~~ 215 (442)
|.|+||++||.|... .-|.-||||+++|..+.
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 899999999999764 35789999999998874
No 59
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.89 E-value=1e-05 Score=84.11 Aligned_cols=118 Identities=15% Similarity=0.041 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC---C--CCC----CCCceeeccCC---CCcceeeecCHHHHHHHHHhc
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK---P--GGA----IAKPFITHHNS---LNMKMFLRIAPELYLKRLIIG 180 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~---~--~g~----~~~~f~~~~~~---~~~~~~L~~Spql~lk~ll~~ 180 (442)
-.+++..|.+.+++.|.+.||.||.||+|.+. . .|+ .-+.|.+.... .+.+++|+--.+..+-.+++.
T Consensus 54 G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 133 (518)
T 3ial_A 54 GFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSK 133 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHh
Confidence 45788899999999999999999999999853 1 221 11233321110 145788875444333332221
Q ss_pred -------cCCceEEEecccccCCCCC---CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 181 -------GFNKIFEINKNFRNEGISP---RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 181 -------g~~rvf~i~~~FR~E~~~~---rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
-.-|+|++|+|||+|...+ -+.-||+|.|.+....+.++..+.++.++..
T Consensus 134 ~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~ 193 (518)
T 3ial_A 134 WVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKV 193 (518)
T ss_dssp HCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHH
Confidence 1249999999999995432 4889999999999888888888888777643
No 60
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.87 E-value=2.5e-05 Score=80.77 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHH-----HHHHHHh
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPEL-----YLKRLII 179 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql-----~lk~ll~ 179 (442)
-.+++..+.+.+|+.|.+.||.||.||+|.+. .+|+ ..+.|.. +.-+..++|+--.+. +.+.+-.
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s 125 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAK 125 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhh
Confidence 35778899999999999999999999999964 2332 1123332 233667888854332 2222211
Q ss_pred -----ccCCceEEEecccccCCCC--C--CCCCccchhhhhhccC
Q psy8863 180 -----GGFNKIFEINKNFRNEGIS--P--RHNPEFTMIEFYAAYT 215 (442)
Q Consensus 180 -----~g~~rvf~i~~~FR~E~~~--~--rHl~EFtmlE~e~~~~ 215 (442)
.-.-|+|++|+|||+|... . -+.-||+|.|+|....
T Consensus 126 ~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~ 170 (471)
T 3a32_A 126 HRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP 170 (471)
T ss_dssp HGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE
T ss_pred ccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC
Confidence 2246999999999999765 3 2789999999998754
No 61
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.81 E-value=6.6e-05 Score=77.65 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC----C-CceeeccCCCCcceeeecCHHHHHHHHHhcc--
Q psy8863 113 VFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI----A-KPFITHHNSLNMKMFLRIAPELYLKRLIIGG-- 181 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~----~-~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-- 181 (442)
..+++.++++.+++.+.++||.||.||.|... ..|.. . +.|.+.. ..+.++||.-..+..+-.+....
T Consensus 218 GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~-~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 218 GALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP-SRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT-TTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec-CCCCeEEECCcCcHHHHHHHhhccC
Confidence 46788899999999999999999999999963 11211 1 3343321 11357899877776665544321
Q ss_pred -----CCceEEEecccccCCC---C---CCCCCccchhhhhhccCCH-HHHHHHHHHHHHHH
Q psy8863 182 -----FNKIFEINKNFRNEGI---S---PRHNPEFTMIEFYAAYTNY-IWLMKFTEKMIKKI 231 (442)
Q Consensus 182 -----~~rvf~i~~~FR~E~~---~---~rHl~EFtmlE~e~~~~~~-~dl~~~~e~li~~i 231 (442)
.-|+|++++|||+|.. + --+.-||+|.|.+..-.+. ++..+..++++...
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~ 358 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQ 358 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHH
Confidence 2499999999999965 2 2477899999999876654 67777777776543
No 62
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.67 E-value=1.2e-05 Score=83.61 Aligned_cols=121 Identities=16% Similarity=0.060 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHH-HhhhCCcEEecCceeecC----CCCCCCCc-----eeec-cC-----------------------
Q psy8863 113 VFKKRTQIISSIRH-FMEKNDFMEVETPILHNK----PGGAIAKP-----FITH-HN----------------------- 158 (442)
Q Consensus 113 ~~~~rs~i~~~ir~-ff~~~gF~EV~TPiL~~~----~~g~~~~~-----f~~~-~~----------------------- 158 (442)
-.+++..+.+.+++ ++.+.||.||.||+|.+. ..| +... |.+. ..
T Consensus 230 G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SG-h~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 230 SARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSG-HAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHT-GGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcC-CcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 45678899999996 689999999999999863 222 1122 2221 00
Q ss_pred -----CCCcceeeecCHHHHHHHHHhc------c-CCceEE-EecccccCCC--C-CCCCCccchhhhhhccCCHHHHHH
Q psy8863 159 -----SLNMKMFLRIAPELYLKRLIIG------G-FNKIFE-INKNFRNEGI--S-PRHNPEFTMIEFYAAYTNYIWLMK 222 (442)
Q Consensus 159 -----~~~~~~~L~~Spql~lk~ll~~------g-~~rvf~-i~~~FR~E~~--~-~rHl~EFtmlE~e~~~~~~~dl~~ 222 (442)
.-+..+||+-..+...=.++.. . .-|+|+ +|+|||+|.. . --+.-||+|.|++. |.+.++..+
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~e 387 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVLK 387 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHHH
Confidence 0145678875443322222211 1 238999 9999999943 2 26889999999998 667788887
Q ss_pred HHHHHHHHHHHHh
Q psy8863 223 FTEKMIKKIIMDC 235 (442)
Q Consensus 223 ~~e~li~~i~~~~ 235 (442)
..++++......+
T Consensus 388 e~ee~i~~~~~~~ 400 (522)
T 2cja_A 388 CAEELHDRYMHIF 400 (522)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777773333433
No 63
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.63 E-value=0.00011 Score=75.32 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCCC----CCceeeccCCCCcceeeecCHHHHHHHHHhcc--
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGAI----AKPFITHHNSLNMKMFLRIAPELYLKRLIIGG-- 181 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~~----~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-- 181 (442)
...+++.++++.+++.+.++||.||.||.|... ..|.- .+.|.+.. -+.++||.-..+..+-.+....
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~--~~~~~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG--DGDKKYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES--SSSCEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeec--CCcceEEeccCcHHHHHHHhcccc
Confidence 356889999999999999999999999999963 22221 12333321 1467899877676664443321
Q ss_pred -----CCceEEEecccccCCCC----C---CCCCccchhhhhhccCCHHH--HHHHHHHHHHH
Q psy8863 182 -----FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTNYIW--LMKFTEKMIKK 230 (442)
Q Consensus 182 -----~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~~~d--l~~~~e~li~~ 230 (442)
.-|+|++++|||+|... + -+.-||+|.|.+.- ..-++ ..+..++++..
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f-~~pe~~~s~~e~e~~~~~ 345 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVV-CSPRQEESWRHLEDMITT 345 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEE-ECSSTTHHHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEE-eCcchHHHHHHHHHHHHH
Confidence 24899999999999732 1 47789999999743 32233 55555555443
No 64
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.63 E-value=0.00012 Score=76.32 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccCCCCcceeeecCHHHHHHHHHhcc--
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG-- 181 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-- 181 (442)
.-.+++.++++.+++.+.++||.||.||.|.+. ..|. ..+.|.+. +..+||.-..+..+-.+....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~----~~~~~L~PT~E~~~~~l~~~~i~ 348 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA----ETDLYLTGTAEVVLNALHSGEIL 348 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET----TTTEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec----CCCEEEccCCcHHHHHHHhcccc
Confidence 356889999999999999999999999999853 1221 11333332 357888766665554443221
Q ss_pred -----CCceEEEecccccCCCC----C---CCCCccchhhhhhccCC-HHHHHHHHHHHHHHH
Q psy8863 182 -----FNKIFEINKNFRNEGIS----P---RHNPEFTMIEFYAAYTN-YIWLMKFTEKMIKKI 231 (442)
Q Consensus 182 -----~~rvf~i~~~FR~E~~~----~---rHl~EFtmlE~e~~~~~-~~dl~~~~e~li~~i 231 (442)
.-|+|++++|||+|.+. + -+.-||+|.|.+.--.+ .++..+..++++...
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHH
Confidence 24899999999999732 2 47889999999854333 347777777766553
No 65
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.59 E-value=0.00049 Score=75.34 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecCCCCC----CCC-ceeeccCCCCcceeeecC--HHHHHHHH--HhccC--CceE
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNKPGGA----IAK-PFITHHNSLNMKMFLRIA--PELYLKRL--IIGGF--NKIF 186 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~----~~~-~f~~~~~~~~~~~~L~~S--pql~lk~l--l~~g~--~rvf 186 (442)
..+.+.+|+.|...||.|+.|..+++...-. ..+ .+......-.....||+| |.+..-.. ...+. -|+|
T Consensus 496 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlF 575 (795)
T 2rhq_B 496 QHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLY 575 (795)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEE
Confidence 3467789999999999999999998642111 112 232211111123458877 44332211 11222 4999
Q ss_pred EEecccccCCCCCCCCCccchhhhhhcc
Q psy8863 187 EINKNFRNEGISPRHNPEFTMIEFYAAY 214 (442)
Q Consensus 187 ~i~~~FR~E~~~~rHl~EFtmlE~e~~~ 214 (442)
|+|+|||.+..+..| +||+|+.+-+.+
T Consensus 576 EiG~Vf~~d~~~~~~-~e~~~la~l~~G 602 (795)
T 2rhq_B 576 EIGRVFFGNGEGELP-DEVEYLSGILTG 602 (795)
T ss_dssp EEEEEEECCCTTSCC-EEEEEEEEEEES
T ss_pred EEeeEEecCCcccCc-chhhEEEEEEEe
Confidence 999999975543357 999999876654
No 66
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.56 E-value=7e-05 Score=77.95 Aligned_cols=47 Identities=21% Similarity=0.122 Sum_probs=35.4
Q ss_pred CceEEEecccccCCC-CC--CCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEGI-SP--RHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 183 ~rvf~i~~~FR~E~~-~~--rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
-|+|+||+|||+|.. .. -+.-||+|.|+| .|.+.++..+..++++..
T Consensus 210 ~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~ 259 (505)
T 1ati_A 210 FGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEE 259 (505)
T ss_dssp EEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHH
T ss_pred EEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHH
Confidence 599999999999953 22 378999999999 777766665555555443
No 67
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.40 E-value=0.00019 Score=68.79 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=60.5
Q ss_pred HHHHH--HHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecC--HHHHHHHHHh--c-cCCceEEEecccc
Q psy8863 121 ISSIR--HFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIA--PELYLKRLII--G-GFNKIFEINKNFR 193 (442)
Q Consensus 121 ~~~ir--~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~S--pql~lk~ll~--~-g~~rvf~i~~~FR 193 (442)
.+.+| +.|.++||.||.||++....--.. +.|. +..|+.+-|+-- |.+. +.-+. . ..-|.|++|+|||
T Consensus 7 e~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f~---d~~g~~l~LRpd~T~~~a-~~~~~~~~~~p~R~~y~g~vfR 81 (275)
T 1usy_A 7 EKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFFL---DRKGNLFSIREDFTKTVL-NHRKRYSPDSQIKVWYADFVYR 81 (275)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCEE---ETTSCEEEECCCHHHHHH-HHHTTCTTCCCEEEECCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCccccchhhhcc-cccC---CCCCCEEEeCCcChHHHH-HHHhhcCCCCceEEEEeceEEe
Confidence 34445 999999999999999986421111 2442 234566777732 3333 22222 1 3469999999999
Q ss_pred cCCCCCCCCCccchhhhhhccCC
Q psy8863 194 NEGISPRHNPEFTMIEFYAAYTN 216 (442)
Q Consensus 194 ~E~~~~rHl~EFtmlE~e~~~~~ 216 (442)
.|.+.. -||||+++|..+.+
T Consensus 82 ~e~~~~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 82 YSGSDL---VAEYQLGLEKVPRN 101 (275)
T ss_dssp EETTEE---EEEEEEEEEEESCC
T ss_pred cCCCCC---CeeeEeCEEEecCC
Confidence 998776 89999999998764
No 68
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.88 E-value=0.0007 Score=66.18 Aligned_cols=118 Identities=12% Similarity=0.003 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEecCceeecC----CCCC----CCCceeeccC-----------------------CC
Q psy8863 112 KVFKKRTQIISSIRHFMEKNDFMEVETPILHNK----PGGA----IAKPFITHHN-----------------------SL 160 (442)
Q Consensus 112 ~~~~~rs~i~~~ir~ff~~~gF~EV~TPiL~~~----~~g~----~~~~f~~~~~-----------------------~~ 160 (442)
..-+++..+.+.+++ ..++||.||.||.|.+. -.|. .-..|.+... .-
T Consensus 62 ~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~ 140 (346)
T 3mf2_A 62 LYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS 140 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEE
T ss_pred hHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccC
Confidence 345778889999999 88999999999999853 1111 0012222110 01
Q ss_pred CcceeeecCHHHHHHHHHhc------cCCceEEEecccccCCCC-CCCCCccchhhhhhccCCHHHHHHHHHHHHHHH
Q psy8863 161 NMKMFLRIAPELYLKRLIIG------GFNKIFEINKNFRNEGIS-PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 161 ~~~~~L~~Spql~lk~ll~~------g~~rvf~i~~~FR~E~~~-~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~i 231 (442)
+..+||.-..+..+-.+... ..-|+-.+|+|||.|.+. --++-+|+|.|+-.. .+-+++.+..++++..+
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~-~tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCI-GTPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEE-ESHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEE-eCHHHHHHHHHHHHHHH
Confidence 23577876554444443332 234677799999999974 489999999987544 47888888888887764
No 69
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.54 E-value=0.0033 Score=67.68 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhh-hCCcEEecCceeecC
Q psy8863 113 VFKKRTQIISSIRHFME-KNDFMEVETPILHNK 144 (442)
Q Consensus 113 ~~~~rs~i~~~ir~ff~-~~gF~EV~TPiL~~~ 144 (442)
-.+++..|.+.+|+.|. ..||.||.||+|++.
T Consensus 100 G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 100 GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 35788999999999998 569999999999963
No 70
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.52 E-value=0.0045 Score=63.11 Aligned_cols=105 Identities=11% Similarity=-0.032 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHH-HHhhhCC-cEEecCceeecCC-CCCCCCceeeccCCCCcceeeec-CHHHHHHHH---Hhc---c-C
Q psy8863 114 FKKRTQIISSIR-HFMEKND-FMEVETPILHNKP-GGAIAKPFITHHNSLNMKMFLRI-APELYLKRL---IIG---G-F 182 (442)
Q Consensus 114 ~~~rs~i~~~ir-~ff~~~g-F~EV~TPiL~~~~-~g~~~~~f~~~~~~~~~~~~L~~-Spql~lk~l---l~~---g-~ 182 (442)
..+|+.+++..+ .+-.+++ +.||+||+...-+ .|+ .+.| . +||+- .-|-++... +-. . .
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH-~d~~-------~--~~LRPeTaqg~~~nfk~~~~s~r~~LP 173 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPG-DSAF-------R--GGLRENLLHGALEHYVNCLDLVNKRLP 173 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSS-CSCC-------T--TB-CSCSHHHHHHHTTTTTGGGTTBSS
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCcc-hhhh-------c--ceECCCCChhHHHHHhhhhhhccccCC
Confidence 367888998444 4444466 7789999955422 222 2222 2 67775 334443321 111 1 2
Q ss_pred CceEEEecccccCC--CCC----CCCCccchhhhhhccCCHHHHHHHHHHHHH
Q psy8863 183 NKIFEINKNFRNEG--ISP----RHNPEFTMIEFYAAYTNYIWLMKFTEKMIK 229 (442)
Q Consensus 183 ~rvf~i~~~FR~E~--~~~----rHl~EFtmlE~e~~~~~~~dl~~~~e~li~ 229 (442)
=++.+||+|||+|. +.+ -+.-||||.|.+ .|++-++..+..+.++.
T Consensus 174 ~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~~~~ 225 (459)
T 3ikl_A 174 YGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV-WFTPPRTSNQWLDFWLR 225 (459)
T ss_dssp EEEEEEEEEECCC----------CCCCEEEEEEEE-EEECGGGHHHHHHHHHH
T ss_pred eEEEEEeeeeecccccccCCCCcccccceeeeeEE-EEeChhHHHHHHHHHHH
Confidence 37999999999995 333 456899999998 44554444444444433
No 71
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.01 E-value=0.018 Score=60.95 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCC---------CCCCCCceeeccCCCCcceeeecCHHHHHHHHHhcc-----CCc
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKP---------GGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGG-----FNK 184 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~---------~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~g-----~~r 184 (442)
.+.+.+|+.|...||.|+.|+.+++.. .+ +...+.....--..-..||+|----+=..++.. --|
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vr 473 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLK 473 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 457789999999999999999998631 11 112222211111123568887322222223321 248
Q ss_pred eEEEecccccCCCCCCCCCccchhhhhhccC--CHHHHHHHHHHHHHH
Q psy8863 185 IFEINKNFRNEGISPRHNPEFTMIEFYAAYT--NYIWLMKFTEKMIKK 230 (442)
Q Consensus 185 vf~i~~~FR~E~~~~rHl~EFtmlE~e~~~~--~~~dl~~~~e~li~~ 230 (442)
+||+|+|||.+..+.+|.+|+.++.+-+.+. ++.++...++.++..
T Consensus 474 lFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 474 LFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred EEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999876678999999998876653 688888877766554
No 72
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.88 E-value=0.0082 Score=61.43 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHH-h-hhCCcEEecCceeecCC---CC-CC----CCceeec-------------c--CCCCcceeee
Q psy8863 113 VFKKRTQIISSIRHF-M-EKNDFMEVETPILHNKP---GG-AI----AKPFITH-------------H--NSLNMKMFLR 167 (442)
Q Consensus 113 ~~~~rs~i~~~ir~f-f-~~~gF~EV~TPiL~~~~---~g-~~----~~~f~~~-------------~--~~~~~~~~L~ 167 (442)
=.+++..|.+.+++. + .+.|+.||.||+|.+.. .. ++ ++.+.-. . ..++.++||+
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 357788999988877 4 58999999999998642 11 11 1111100 0 1124467887
Q ss_pred c--CHHH---HHHHHHhc--c-CCceEEEecccc---cCCCC---CCCCCccchhhhhhccCCHHHHHHHHHHHHHH
Q psy8863 168 I--APEL---YLKRLIIG--G-FNKIFEINKNFR---NEGIS---PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKK 230 (442)
Q Consensus 168 ~--Spql---~lk~ll~~--g-~~rvf~i~~~FR---~E~~~---~rHl~EFtmlE~e~~~~~~~dl~~~~e~li~~ 230 (442)
- +|-. |+..+-.. . .=+++|||+||| ||-+. -.+.-||||.|++. |++.++..+..+.++..
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRH 216 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHHH
Confidence 5 2212 12221111 2 349999999999 68643 14678999999984 56777766655555444
No 73
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.60 E-value=0.022 Score=52.14 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCC----C--CCCCceeeccCCCCcceeeecCHHHHHHHHHhc----cC--CceE
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPG----G--AIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG----GF--NKIF 186 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~----g--~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~~----g~--~rvf 186 (442)
++.+.+|+.|...||.||-|-.+++... + .....+.....--..-..||+|----+=..++. +. -|+|
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lF 87 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEE
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEE
Confidence 5677899999999999999999986311 0 001112211111122356888832222222332 22 2899
Q ss_pred EEecccccCCCCC------CCCCccchhhhhhcc-------------CCHHHHHHHHHHHHHHH
Q psy8863 187 EINKNFRNEGISP------RHNPEFTMIEFYAAY-------------TNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 187 ~i~~~FR~E~~~~------rHl~EFtmlE~e~~~-------------~~~~dl~~~~e~li~~i 231 (442)
|||+||+.++.+. .+..|..+|-+-+.+ .|+.|+...+|.++..+
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 88 EFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999876431 234577777665544 35778888877776654
No 74
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=95.39 E-value=0.035 Score=50.77 Aligned_cols=114 Identities=11% Similarity=-0.009 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhhCCcEEecCceeecCC----CC--CCCCceeeccCCCCcceeeecC--HHHHHHHH--HhccCC--ce
Q psy8863 118 TQIISSIRHFMEKNDFMEVETPILHNKP----GG--AIAKPFITHHNSLNMKMFLRIA--PELYLKRL--IIGGFN--KI 185 (442)
Q Consensus 118 s~i~~~ir~ff~~~gF~EV~TPiL~~~~----~g--~~~~~f~~~~~~~~~~~~L~~S--pql~lk~l--l~~g~~--rv 185 (442)
.++.+.+|+.|...||.||-|-.+++.. -+ ...........--..-..||+| |.+..-.. ...+.. |+
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~l 86 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYL 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeE
Confidence 3567789999999999999999998631 00 0001111111111233568888 44432211 123443 89
Q ss_pred EEEecccccCCCCC------CCCCccchhhhhhcc-------------CCHHHHHHHHHHHHHHH
Q psy8863 186 FEINKNFRNEGISP------RHNPEFTMIEFYAAY-------------TNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 186 f~i~~~FR~E~~~~------rHl~EFtmlE~e~~~-------------~~~~dl~~~~e~li~~i 231 (442)
||||+||+.++.+. .+..|..+|-+-+.+ .|+.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 87 FEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999865321 234577777665443 47889988888887654
No 75
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=94.62 E-value=0.17 Score=40.72 Aligned_cols=60 Identities=15% Similarity=0.357 Sum_probs=50.5
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEeccC
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSL 80 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~~ 80 (442)
+.=+.|.|.+ |.|.+++..+... + .+.+||+|.+.|.+.....|.+||++.+-..+.+|.
T Consensus 42 v~~~~l~D~T-----G~IrvtlW~~~a~------~-~l~~Gdvv~i~g~vk~~~~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 42 LKSFIVRDET-----GSIRVTLWDNLTD------I-DVGRGDYVRVRGYIREGYYGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEEEEEETT-----EEEEEEEEGGGGG------S-CCCTTCEEEEEEEEEECTTSSEEEEEEEEEEEECCC
T ss_pred EEEEEEECCC-----CcEEEEEECcccc------c-ccCCCCEEEEEEEEEEccCCCEEEEeCCceEEEecc
Confidence 3348899999 9999999876431 1 799999999999998887789999999999999885
No 76
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.82 E-value=0.12 Score=42.02 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=47.8
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec-CCceeEEEEeEEEEEecc
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT-NTGELSIKVSSLKLITKS 79 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~-~~~~~el~~~~i~vl~~~ 79 (442)
+++..+.|.|+| |.|.+++..+.. .....|..|++|.|+|.+.+. -.|.++|.+.+...+.++
T Consensus 42 ~~~~~~~l~D~T-----G~I~~t~w~~~~-----~~~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 42 GKLANVIIADDT-----GELRAVFWTENI-----KLLKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp CEEEEEEEEETT-----EEEEEEEETTGG-----GGGGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEE
T ss_pred EEEEEEEEEeCC-----CeEEEEEeCchh-----hhhhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEEC
Confidence 357789999999 999999987642 123578999999999998654 456788888765555444
No 77
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=93.20 E-value=0.32 Score=42.26 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=50.1
Q ss_pred ccccCCeEEEEEecCCCCCCCc-cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 3 KRVMGKISFIMLQDTSGPDSNG-KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 3 ~R~~g~~~Fi~lrD~~~~~~~~-~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
++...+-....|.|+| | .|.|++..+...+. -..-..+..|++|.|.|++. +-+++.+|.++++.++..
T Consensus 59 ~~~~~~~~~ytIDD~T-----G~~I~cv~w~~~~~~~-~~~~~~l~~G~~VrV~G~v~-~fr~~rqI~~~~i~~v~d 128 (159)
T 3kf6_A 59 IDIYEGKHVLTVDDCS-----GMVLRVVFIIQDDFSM-SKRAISMSPGNVVCVFGKIN-SFRSEVELIAQSFEELRD 128 (159)
T ss_dssp EEEETTEEEEEEECSS-----SCEEEEEEEGGGCHHH-HHHHTTCCTTCEEEEEEEEE-CSSSSCEEEEEEEEEECS
T ss_pred EEEeCCEEEEEEecCC-----CCeEEEEEEccCCCCc-ccccccCCCCCEEEEEEEEE-eeCCEEEEEEEEEEECCC
Confidence 3444456778899999 8 59999987642111 01123589999999999996 445678999999988875
No 78
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=92.80 E-value=0.37 Score=52.52 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhhCCcEEecCceeecCCC----CCCCCceeeccCCCCcceeeecC--HHHHHHHH--Hhcc---CCce
Q psy8863 117 RTQIISSIRHFMEKNDFMEVETPILHNKPG----GAIAKPFITHHNSLNMKMFLRIA--PELYLKRL--IIGG---FNKI 185 (442)
Q Consensus 117 rs~i~~~ir~ff~~~gF~EV~TPiL~~~~~----g~~~~~f~~~~~~~~~~~~L~~S--pql~lk~l--l~~g---~~rv 185 (442)
...+.+.+|+.|...||.|+-|-.+++... +...+.+......-..-..||+| |.+..-.. ...+ --|+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrl 570 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALL 570 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEE
Confidence 445778899999999999999888886410 00112232221111223458877 44332211 1123 2499
Q ss_pred EEEecccccCCCCCCCCCccchhhhhhcc------------CCHHHHHHHHHHHHHHH
Q psy8863 186 FEINKNFRNEGISPRHNPEFTMIEFYAAY------------TNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 186 f~i~~~FR~E~~~~rHl~EFtmlE~e~~~------------~~~~dl~~~~e~li~~i 231 (442)
||+|+||| + .|++|+..-+.+ .|+.|+...+|.++..+
T Consensus 571 FEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 571 FEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 99999999 2 788888876654 47999999999998875
No 79
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=92.61 E-value=0.53 Score=37.14 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=45.3
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
+.=+.|.|.| |.|.+++..+... + .+..||+|.|.|.+..- .+.+||.+.+...+.+|
T Consensus 39 v~~~~l~DeT-----G~I~~tlW~~~~~------~-~i~~Gdvv~i~g~v~~~-~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 39 LKSLFLKDDT-----GSIRGTLWNELAD------F-EVKKGDIAEVSGYVKQG-YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEETT-----EEEEEEEEGGGGG------C-CCCTTCEEEEEEEEEEC---CEEEEEEEEEEEECC
T ss_pred EEEEEEECCC-----CcEEEEEECCccc------c-ccCCCCEEEEEEEEEEc-CCeEEEEECCCcEEEEC
Confidence 4447899999 9999999876531 1 68999999999987644 45899999988888776
No 80
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=91.27 E-value=0.96 Score=37.71 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=45.2
Q ss_pred cccCCeEEEEEecCCCCCCCc-cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 4 RVMGKISFIMLQDTSGPDSNG-KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 4 R~~g~~~Fi~lrD~~~~~~~~-~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
+....-.-+.|.||| | .|.|....+...+ -.....+..|+.|.|.|.+..- .|...|.+..++.+..
T Consensus 44 ~~~~~~~~~~ldD~T-----G~~I~~~~W~~~~~~--~~~~~~~~~g~yVrV~G~l~~f-~g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 44 EKAPTNIVYKIDDMT-----AAPMDVRQWVDTDDT--SSENTVVPPETYVKVAGHLRSF-QNKKSLVAFKIMPLED 111 (132)
T ss_dssp EECSSEEEEEEECSS-----SSCEEEEEEC-----------CCCCTTCEEEEEEEEEEE-TTEEEEEEEEEEECSS
T ss_pred EEcCCeEEEEEECCC-----CCEEEEEEEccCCCc--ccccccccCCCEEEEEEEEEeE-CCEEEEEEEEEEEcCC
Confidence 334455567899999 9 9999998764211 0124678999999999998753 4667788887776644
No 81
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.12 E-value=1.2 Score=37.25 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=45.4
Q ss_pred ccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 5 VMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 5 ~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
....-+-+.|.|+| |.|.|....+.... .......+..|+.|.|.|.+.. -.|...|.+..++.+..
T Consensus 50 ~~~~~~~~~ldD~T-----G~I~~~~W~~~~~~-~~~~~~~~~~g~yVrV~G~v~~-f~g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 50 RNATNVAYSVEDGT-----GQIEVRQWLDSSSD-DSSKASEIRNNVYVRVLGTLKS-FQNRRSISSGHMRPVID 116 (136)
T ss_dssp ECSSEEEEEEECSS-----CEEEEEEECC---------CCSCCTTCEEEEEEEEEE-ETTEEEEEESEEEECSS
T ss_pred ecCCeEEEEEECCC-----CCEEEEEecccCCc-ccccccccCCCCEEEEEEEEEE-eCCEEEEEEEEEEECCC
Confidence 33445557899999 99999998653210 1123467999999999999864 34567788887766544
No 82
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=89.42 E-value=0.83 Score=36.94 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=41.9
Q ss_pred EEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEe
Q psy8863 12 IMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLIT 77 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~ 77 (442)
..++|++ |.|+|-++.+... -..+++++-|+|.|.+.+.- ...||.|..|+++.
T Consensus 55 Y~F~D~T-----G~I~VeId~~~w~------g~~v~p~~~Vri~GevDkd~-~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 55 YVFKDAS-----GTINVDIDHKRWN------GVTVTPKDTVEIQGEVDKDW-NSVEIDVKQIRKVN 108 (109)
T ss_dssp EEEEETT-----EEEEEECCGGGST------TCCCCTTSCEEEEEEEEEET-TEEEEEEEEEEEC-
T ss_pred EEEECCC-----ccEEEEEChhhcC------CcccCCCCEEEEEEEECCCC-CceEEEEEEEEEcc
Confidence 3579999 9999999766431 14689999999999998643 35789999998875
No 83
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=85.13 E-value=2.7 Score=33.56 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=44.3
Q ss_pred eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEE-EEEeecCCceeEEEEeEEEEEeccCCCCCc
Q psy8863 9 ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAK-GTLFKTNTGELSIKVSSLKLITKSLRPLPN 85 (442)
Q Consensus 9 ~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~-G~v~~~~~~~~el~~~~i~vl~~~~~~lP~ 85 (442)
+.=+.|.|.| |.|.+.+..+. +..|++|.|. |.+. .-.|.++|.+.+...+.+....-|.
T Consensus 39 v~~~~l~DeT-----G~I~~tlW~~~-----------l~~Gdvv~i~ng~v~-~~~g~~~L~v~~~~~I~~~~~~~~~ 99 (106)
T 2k75_A 39 VYQGYIEDDT-----ARIRISSFGKQ-----------LQDSDVVRIDNARVA-QFNGYLSLSVGDSSRIESVNVNIPL 99 (106)
T ss_dssp EEEEEEECSS-----CEEEEEEESSC-----------CCTTEEEEEEEEEEE-EETTEEEEEECTTSEEEECCSCCCC
T ss_pred EEEEEEEcCC-----CeEEEEEEcCc-----------cCCCCEEEEEeeEEe-EECCEEEEEECCcEEEEECCCCCcc
Confidence 5557789999 99999887652 8999999999 5554 4567799999876666665443343
No 84
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=85.01 E-value=2.6 Score=41.87 Aligned_cols=64 Identities=14% Similarity=0.298 Sum_probs=50.1
Q ss_pred cccCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 4 RVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 4 R~~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
+..|.=+|+.|.|++ +.|.|++=+.. ++.-+.+..|..||.|.|.|.+.. + +|.++++++++-+
T Consensus 299 ~~~GGHV~f~l~d~~-----~~i~c~ayept--k~fr~~vr~L~~GD~V~v~G~v~~---g--tLnvEk~~v~~l~ 362 (402)
T 3au7_A 299 DIEGGHVFFEIDTKF-----GSVKCAAFEPT--KQFRNVIRLLRKGDVVEVYGSMKK---D--TINLEKIQIVELA 362 (402)
T ss_dssp EETTTEEEEEEEETT-----EEEEEEECGGG--TTHHHHHTTCCTTCEEEEEEEEET---T--EEEEEEEEEEECC
T ss_pred eccCceEEEEEEcCC-----CEEEEEEEccc--hHHHHHHhcCCCCCEEEEEEeecC---C--EEEEEEEEEcccC
Confidence 345677899999999 99999996521 123355688999999999999775 2 8999999998763
No 85
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=83.99 E-value=0.23 Score=50.78 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=16.7
Q ss_pred CCccceehhHHHHHHHHcC
Q psy8863 407 PPASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g 425 (442)
.|..|||||+|||+.++..
T Consensus 342 ~pavGfaiGieRli~~L~e 360 (465)
T 3net_A 342 MPGVGISIGLTRLISRLLK 360 (465)
T ss_dssp CCEEEEEEEHHHHHHHHHH
T ss_pred CceeeeeccHHHHHHHHHH
Confidence 5889999999999988764
No 86
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=83.13 E-value=3.2 Score=33.81 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=38.6
Q ss_pred EEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEee-cCC-ceeEEEEeEEEEEeccC
Q psy8863 26 IQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK-TNT-GELSIKVSSLKLITKSL 80 (442)
Q Consensus 26 iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~-~~~-~~~el~~~~i~vl~~~~ 80 (442)
|+||+..+.. +.++.|+.|+.|.|+|.+.. ++. ..++|++++|+.++...
T Consensus 49 i~vv~~Gk~A-----E~~~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 49 ISAVALGDLA-----LLLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSM 100 (115)
T ss_dssp EEEEEETHHH-----HHHTTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSC
T ss_pred EEEEEEhHHH-----HhhhccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCC
Confidence 8889887532 22367999999999999985 333 46899999999997753
No 87
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=80.01 E-value=5.7 Score=31.76 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=42.9
Q ss_pred EEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 10 SFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 10 ~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
..+.|.|.| |.|-+++..+. .+..+..|++|.|.|-....-.|.++|.+.+...+.+.
T Consensus 37 ~~~~l~DeT-----G~I~~t~W~~~-------~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 37 QVGLLGDET-----GIIKFTIWKNA-------ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp EEEEEECTT-----CCEEEEEEGGG-------CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEEC
T ss_pred EEEEEECCC-----CeEEEEEECcc-------cccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEEC
Confidence 457899999 99999998632 13578999999999544444567899999876555543
No 88
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=79.39 E-value=6 Score=32.08 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=44.0
Q ss_pred ccCC--eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEE-EEEeecCCceeEEEEeEEEEEecc
Q psy8863 5 VMGK--ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAK-GTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 5 ~~g~--~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~-G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
..|+ +.=+.|.|.| |.|.+.+..+.. ..+..|++|.|+ |.+.. -.|.++|.+.+...+.++
T Consensus 33 k~G~~~~~~~~l~D~T-----G~I~~tlW~~~~--------~~~~~G~vv~i~~g~v~~-~~g~~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 33 KNGVRTISEAIVGDET-----GRVKLTLWGKHA--------GSIKEGQVVKIENAWTTA-FKGQVQLNAGSKTKIAEA 96 (119)
T ss_dssp TTCCEEEEEEEEEETT-----EEEEEEEEGGGT--------TCCCTTCEEEEEEEEEEE-ETTEEEEEECTTCEEEEC
T ss_pred cCCCEEEEEEEEEeCC-----CEEEEEEECChh--------hcCCCCCEEEEEeEEEEE-eCCEEEEEECCCEEEEEc
Confidence 3454 4457799999 999999987642 357999999999 76653 456789988775444443
No 89
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=78.71 E-value=8 Score=36.23 Aligned_cols=64 Identities=6% Similarity=-0.026 Sum_probs=44.5
Q ss_pred CCeEEEEEecCCCCCCCc-cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEec
Q psy8863 7 GKISFIMLQDTSGPDSNG-KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITK 78 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~-~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~ 78 (442)
+.-+-+.|.|++ + .|.|.+..+... .-.....+..|++|.|.|.+..- .+...|.+..|+.+..
T Consensus 87 ~~~~~~~L~D~T-----G~~I~~k~W~~~~~--~~~~~~~~~~G~yVrV~G~v~~f-~g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 87 PTNIVYKIDDMT-----AAPMDVRQWVDTDD--TSSENTVVPPETYVKVAGHLRSF-QNKKSLVAFKIMPLED 151 (270)
T ss_dssp SSEEEEEEECSS-----SSCEEEEEECC---------CCCCCTTCEEEEEEEEEEE-TTEEEEEEEEEEECSC
T ss_pred cceEEEEEECCC-----CCEEEEEEEcCcCc--ccchhhcCCCCCEEEEEEEEEec-CCeeEEEEEEEEecCC
Confidence 344557799999 8 899999865311 00123578999999999999854 4567788887776654
No 90
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=77.82 E-value=6.8 Score=35.55 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=45.3
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC-------ceeEEEEeEEEEEecc
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT-------GELSIKVSSLKLITKS 79 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-------~~~el~~~~i~vl~~~ 79 (442)
..+|+.|.|.|+. ...|.|.++.....+.. -.+.....|.+|.|+|++..-.. -.-||.++++++++..
T Consensus 110 ~~~~l~IDDsSG~--~s~i~~k~~~~~~~~~g-l~l~~~~~G~iV~VkG~i~~~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 110 SYVILVISDFIGI--DSKIRVRLSQEQFKEVG-LTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CEEEEEEECCCSS--SCEEEEEEEHHHHHTTT-CCTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ceEEEEEeCCCCC--CceEEEEecHHHhhccC-ccccccCCCeEEEEEEEEEeeccccccccccceEEEEEEEEEeccC
Confidence 5689999999931 12477777654211100 01122458999999999985421 1569999999999874
No 91
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=76.99 E-value=1.9 Score=42.01 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.5
Q ss_pred CCccceehhHHHHHHHHc
Q psy8863 407 PPASGCGIGVDRLIMLLT 424 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~ 424 (442)
.|..||+||+|||+.++-
T Consensus 318 ~pavGfaiglerl~~~l~ 335 (344)
T 1z7m_A 318 AFAIGFCCHMDTILKALE 335 (344)
T ss_dssp CCCEEEEEEHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHH
Confidence 378999999999998764
No 92
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=76.50 E-value=1.8 Score=43.26 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=32.3
Q ss_pred EEEEEEcC--EEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHHcCC
Q psy8863 349 RFELFIIG--NEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNS 426 (442)
Q Consensus 349 ~fdl~~~G--~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l~g~ 426 (442)
-|+.+.+| ..|+||+. |+ ..+..+. |-.|..||+||+|||+.++-..
T Consensus 282 vFe~~~~~~g~~i~~GGR----YD--------------------------~L~~~fG-~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 282 VFEGYGNRLGVPLCSGGR----YD--------------------------ELLSKFH-RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEETTCSSEEEEEEE----CT--------------------------THHHHTT-CCCCEEEEEEEHHHHHHHHCC-
T ss_pred EEEEEECCCCCeeecccc----cc--------------------------hhhhccC-CCCCEEEEEeeHHHHHHHHHhc
Confidence 58999986 47888864 11 2333332 2358999999999999888654
No 93
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=74.02 E-value=3.4 Score=44.94 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhCCcEEecCceeecCC----CCCCCCceeeccCCCCcceeeecC--HHHHHHHH--HhccC--CceEEEe
Q psy8863 120 IISSIRHFMEKNDFMEVETPILHNKP----GGAIAKPFITHHNSLNMKMFLRIA--PELYLKRL--IIGGF--NKIFEIN 189 (442)
Q Consensus 120 i~~~ir~ff~~~gF~EV~TPiL~~~~----~g~~~~~f~~~~~~~~~~~~L~~S--pql~lk~l--l~~g~--~rvf~i~ 189 (442)
..+.+|+.|...||.|+-|-.+++.. -+...........--..--.||+| |.+..-.. ...+. -|+||||
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG 573 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESG 573 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEee
Confidence 34568999999999999999998630 000001121111111233568888 44432211 12233 4899999
Q ss_pred cccccCCCCCCCCCccchhhhhhc-------------cCCHHHHHHHHHHHHHHH
Q psy8863 190 KNFRNEGISPRHNPEFTMIEFYAA-------------YTNYIWLMKFTEKMIKKI 231 (442)
Q Consensus 190 ~~FR~E~~~~rHl~EFtmlE~e~~-------------~~~~~dl~~~~e~li~~i 231 (442)
+||+.++....+..|-.+|-+-+. -.|+.++...+|.++..+
T Consensus 574 ~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 574 LRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 999876543233334444433222 247899999988887654
No 94
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=70.56 E-value=7.8 Score=30.75 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=33.9
Q ss_pred EEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC--CceeEEEEeEEEEE
Q psy8863 26 IQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN--TGELSIKVSSLKLI 76 (442)
Q Consensus 26 iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~--~~~~el~~~~i~vl 76 (442)
++||+..+.. + +..|+.|+.|.|+|.+.... ...+.|++++++.+
T Consensus 55 i~vv~~gk~A-----e-~~~l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA-----E-EWQYRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH-----H-HSTTCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh-----h-hhccCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 7777765431 3 55699999999999998543 34788999998875
No 95
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=66.60 E-value=16 Score=28.71 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=33.6
Q ss_pred EEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec--CCc--eeEEEEeEEEEEec
Q psy8863 26 IQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT--NTG--ELSIKVSSLKLITK 78 (442)
Q Consensus 26 iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~--~~~--~~el~~~~i~vl~~ 78 (442)
++|++..+.. + ...+.|+.|+.|.|+|.+... +.| .++|++++++.++.
T Consensus 50 ~~vv~~g~~A--e--~~~~~l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN--Q--AITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT--H--HHHTTCCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHH--H--HHHhhCCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 8888886642 1 123569999999999999753 111 38899999988764
No 96
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=63.82 E-value=6 Score=40.19 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=16.3
Q ss_pred CCccceehhHHHHHHHHcC
Q psy8863 407 PPASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~g 425 (442)
.|..||++|+|||+.++..
T Consensus 327 ~PavGfa~gleRl~~~l~~ 345 (467)
T 4e51_A 327 TAACGWAMGIERILELLKE 345 (467)
T ss_dssp CCEEEEEEEHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHh
Confidence 4677999999999998865
No 97
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=62.22 E-value=5.7 Score=32.00 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=46.4
Q ss_pred cCCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEE-EeecC------CceeEEEEeEEEEEec
Q psy8863 6 MGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGT-LFKTN------TGELSIKVSSLKLITK 78 (442)
Q Consensus 6 ~g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~-v~~~~------~~~~el~~~~i~vl~~ 78 (442)
.|++.=++|.|.+ |.|++++..+.+. .....|..|+++.|.|- |.... .+.+||....-+.+.+
T Consensus 38 ~g~~~~~~L~De~-----G~I~at~~~~~~~----~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~ 108 (114)
T 1ynx_A 38 DGKLFNVNFLDTS-----GEIRATAFNDFAT----KFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEE 108 (114)
T ss_dssp EEEEEEEEEEETT-----EEEEEEECHHHHH----HHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEE
T ss_pred CceEEEEEEECCC-----CeEEEEECHHHHH----HHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEE
Confidence 3567668899999 8999999765321 12245899999999964 44332 2578888877667766
Q ss_pred cC
Q psy8863 79 SL 80 (442)
Q Consensus 79 ~~ 80 (442)
|.
T Consensus 109 ~~ 110 (114)
T 1ynx_A 109 CF 110 (114)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 98
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=60.46 E-value=10 Score=30.54 Aligned_cols=51 Identities=8% Similarity=0.201 Sum_probs=33.7
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~~ 79 (442)
-++|++..+.. -...+.|+.||.|.|+|.+... +.| .++|.+++|++|++.
T Consensus 51 ~~~v~~wg~~A----e~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 51 YVNCTLWRKTA----ENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEEHHHH----HHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEEECHHH----HHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 37777765421 1122459999999999999743 222 489999999998763
No 99
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=59.09 E-value=49 Score=26.93 Aligned_cols=60 Identities=7% Similarity=0.181 Sum_probs=42.5
Q ss_pred EEEecCCCCCCCccEEE-EEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCC-ceeEEEEeEEEEEecc
Q psy8863 12 IMLQDTSGPDSNGKIQL-YISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNT-GELSIKVSSLKLITKS 79 (442)
Q Consensus 12 i~lrD~~~~~~~~~iQv-v~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~-~~~el~~~~i~vl~~~ 79 (442)
+.|.||. ..+|. ++.... + ..-.-..|..|++|+++=....+-. +..-|.+.+++|+.++
T Consensus 47 l~lSDG~-----~~~~~~mLatql-n--~~v~~g~l~~~sIirl~~y~~~~v~~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 47 LLMSDGL-----NTLSSFMLATQL-N--PLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEECSS-----EEEEEEEECGGG-H--HHHHTTSSCTTCEEEEEEEEEEECSSSCEEEEEEEEEEEECS
T ss_pred EEEECcc-----hheeeehhHHHH-H--HHHhcCCccCCCEEEEEEEEEEEecCCcEEEEEEeeEEeecc
Confidence 6789999 99998 775432 1 1111146999999999876554433 5677889999999873
No 100
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=58.88 E-value=4.7 Score=40.09 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=14.2
Q ss_pred CccceehhHHHHHHHH
Q psy8863 408 PASGCGIGVDRLIMLL 423 (442)
Q Consensus 408 p~~G~giGieRL~m~l 423 (442)
|..|||+|+|||+.++
T Consensus 302 P~vg~~igveRl~~~l 317 (420)
T 1qe0_A 302 TGIGFALSIERLLLAL 317 (420)
T ss_dssp EEEEEEEEHHHHHHHH
T ss_pred CEEEEEecHHHHHHHH
Confidence 5679999999999887
No 101
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=54.48 E-value=11 Score=32.25 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=34.8
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEec
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITK 78 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~ 78 (442)
-+.|++..+.. + ...+.|+.|+.|.|+|.+... +.| .+||.|++|++|..
T Consensus 57 ~i~vv~wg~~A--e--~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~ 114 (158)
T 3tqy_A 57 WHRIAFFNRLA--E--IVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDN 114 (158)
T ss_dssp EEEEEEETHHH--H--HHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC-
T ss_pred EEEEEEEhHHH--H--HHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccC
Confidence 46777765431 1 122459999999999999742 223 48999999999875
No 102
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=53.42 E-value=28 Score=27.40 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=29.9
Q ss_pred EEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC--CceeEEEEeEEE
Q psy8863 26 IQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN--TGELSIKVSSLK 74 (442)
Q Consensus 26 iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~--~~~~el~~~~i~ 74 (442)
|+||+..+.. +.+..+..|+.|.|+|.+.... ...+-++++.++
T Consensus 50 i~vv~wGk~A-----E~~~~~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMA-----SVLDRIAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHH-----HHHTTSCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEhHHH-----HHHhhcCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 8888887532 2345689999999999998543 245666776654
No 103
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=50.92 E-value=36 Score=28.67 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=42.7
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecCCceeEEEEeEEEEE
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLI 76 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl 76 (442)
+.++=+.|-|.| |.|-+++..+.. ..|+.||+|.+++-....-+|.++|.+.+..-+
T Consensus 61 ~~V~~~lVgDeT-----G~I~ftlW~e~~--------~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~I 117 (145)
T 1wjj_A 61 SRIVECLIGDET-----GCILFTARNDQV--------DLMKPGATVILRNSRIDMFKGTMRLGVDKWGRI 117 (145)
T ss_dssp CCCEEEEEECSS-----CEEEEEECTTHH--------HHTCTTCEEEEEEEEEEEETTEEEEEECTTCCB
T ss_pred ceEEEEEEEcCC-----cEEEEEEecCCc--------CcCCCCCEEEEeccEEEeECCEEEEEECCCEEE
Confidence 456667888999 888888876532 347899999999876666678899988754333
No 104
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=50.88 E-value=21 Score=30.31 Aligned_cols=51 Identities=6% Similarity=0.079 Sum_probs=34.3
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl~~~ 79 (442)
-+.|++..+.. -...+.|+.|+.|.|+|.+... +. ..++|.|++|.+|...
T Consensus 64 ~~~v~~wg~~A----e~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 64 FFRIVTFGRLA----EFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEEHHHH----HHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEEECHHH----HHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 47777765421 1122459999999999999753 11 2489999999999753
No 105
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=50.64 E-value=12 Score=31.02 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=34.7
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEec
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITK 78 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~ 78 (442)
-++|++..+.. -...+.|+.||.|.|+|.+... +.| .+||.|++|..|..
T Consensus 50 ~~~v~~wg~~A----e~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 50 FIDARLFGRTA----EIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEEHHHH----HHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEEEEEEcHHH----HHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 47777765421 1122459999999999998752 223 47899999998875
No 106
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=49.87 E-value=7.4 Score=36.05 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCccceehhHHHHHHHHcCCCCcccccc
Q psy8863 406 MPPASGCGIGVDRLIMLLTNSKNIRDVIL 434 (442)
Q Consensus 406 ~pp~~G~giGieRL~m~l~g~~~Irdv~~ 434 (442)
-|.++=+--|+|||.|.+-|.+||-|...
T Consensus 163 ~pv~~EITYGLERiamylQ~vd~vydl~w 191 (298)
T 1j5w_A 163 KDIPLEITYGLERIAMYLQGVDNVYEVQW 191 (298)
T ss_dssp SSCCEEEEEEHHHHHHHHHTCSSGGGCEE
T ss_pred CccceeecccHHHHHHHHhCCCceecccc
Confidence 35667789999999999999999998753
No 107
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=49.29 E-value=8.3 Score=35.95 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=41.2
Q ss_pred CceeeEEEEEEcCEEeeccccccCCHHHHHHHHHhhHHHhhccCCccccCCcHHHHHHHhcCCCCccceehhHHHHHHHH
Q psy8863 344 NNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLL 423 (442)
Q Consensus 344 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~~~~~~~~~~~~~~~~~~e~~~~~d~~yl~~~k~G~pp~~G~giGieRL~m~l 423 (442)
..+...+|+.++|+||.-= . -|. ..|.-+ + -|.++=+--|+|||.|++
T Consensus 145 GAWGLGWEVWldGMEVTQF-T----------YFQ------QvGGi~-c--------------~pv~~EITYGLERlamyl 192 (311)
T 3rf1_A 145 GAWGLGWEVWLDGMEVTQF-T----------YFQ------QVGGIA-V--------------DLVSAEITYGLERIAMYL 192 (311)
T ss_dssp TEEEEEEEEEETTEEEEEE-E----------EEE------EETTEE-C--------------SSCCEEEEEEHHHHHHHH
T ss_pred cccccceEEEEcCeeEeee-e----------eee------eeCCcc-c--------------cccceeeehhHHHHHHHH
Confidence 3577889999999998421 0 011 112111 1 356677899999999999
Q ss_pred cCCCCcccccc
Q psy8863 424 TNSKNIRDVIL 434 (442)
Q Consensus 424 ~g~~~Irdv~~ 434 (442)
-|.+||-|...
T Consensus 193 Q~vd~vyDl~w 203 (311)
T 3rf1_A 193 QNVDNVYDIVW 203 (311)
T ss_dssp TTCSSGGGSEE
T ss_pred hCCCeeeeccc
Confidence 99999998764
No 108
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=49.24 E-value=60 Score=26.86 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=35.2
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC--Cc--eeEEEEeEEEEEec
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN--TG--ELSIKVSSLKLITK 78 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~--~~--~~el~~~~i~vl~~ 78 (442)
.++||+..+.. + ...+-|+.|+-|.|+|.+.... .| ...+++++++.++.
T Consensus 66 ~i~vv~wGk~A--E--~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 66 QMPVIVSGHEN--Q--AITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp EEEEEEESTGG--G--GGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTS
T ss_pred EEEEEEEhHHH--H--HHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcC
Confidence 38888887642 1 1224599999999999997532 22 46678888888864
No 109
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=48.61 E-value=16 Score=33.35 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=44.8
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC-------CceeEEEEeEEEEEecc
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN-------TGELSIKVSSLKLITKS 79 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~-------~~~~el~~~~i~vl~~~ 79 (442)
|++.=++|.|.+ |.|++++..+.+. .....|..|+++.+++..++.. .+.+||....-+.+.+|
T Consensus 43 g~~~~~~L~De~-----G~I~at~~~~~~~----~~~~~l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 43 GKLFSLELVDES-----GEIRATAFNEQVD----KFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp EEEEEEEEECSS-----CEEEEEEEHHHHH----HHGGGCCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred ceEEEEEEECCC-----CeEEEEEChHHHH----HhhhhcccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEc
Confidence 455568899999 8999999865321 1235689999999997443322 36788888765555555
Q ss_pred C
Q psy8863 80 L 80 (442)
Q Consensus 80 ~ 80 (442)
.
T Consensus 114 ~ 114 (246)
T 1jmc_A 114 E 114 (246)
T ss_dssp C
T ss_pred c
Confidence 3
No 110
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=44.91 E-value=56 Score=30.18 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEee
Q psy8863 22 SNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60 (442)
Q Consensus 22 ~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 60 (442)
.+.++.|++..+.+ ...++||-|.|+|.+..
T Consensus 209 ~Prsi~v~l~~dLv--------d~~~PGDrV~vtGI~~~ 239 (268)
T 2vl6_A 209 LPRQLEIILEDDLV--------DSARPGDRVKVTGILDI 239 (268)
T ss_dssp CCCEEEEEEEGGGT--------TSSCTTCEEEEEEEEEE
T ss_pred CCcEEEEEEccCcc--------CcccCCCEEEEEEEEEE
Confidence 34566777765543 57899999999999865
No 111
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=43.57 E-value=7.4 Score=39.14 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=15.4
Q ss_pred CCccceehhHHHHHHHHc
Q psy8863 407 PPASGCGIGVDRLIMLLT 424 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~ 424 (442)
-|..|||||+|||++++-
T Consensus 335 ~pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 335 VPCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHH
Confidence 378899999999998873
No 112
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=43.40 E-value=9.2 Score=37.59 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=15.7
Q ss_pred CCccceehhHHHHHHHHc
Q psy8863 407 PPASGCGIGVDRLIMLLT 424 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~ 424 (442)
.|..||+||+|||+.++-
T Consensus 347 ~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 347 APAVGFAFEVERVMAVLE 364 (373)
T ss_dssp CCCEEEEEEHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHH
Confidence 589999999999998763
No 113
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=41.76 E-value=22 Score=40.48 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=35.9
Q ss_pred CeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhh-cCCCCCcEEEEEEEEeecCCceeEEEEeEEEEEecc
Q psy8863 8 KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF-KNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79 (442)
Q Consensus 8 ~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~el~~~~i~vl~~~ 79 (442)
.++|+.|.|.+ |.+.||+-++. |+.. ..|..+.+|.|+|++.... .+.|.+.++.-++.+
T Consensus 1064 ~maf~tleD~t-----g~~evvvf~~~-----~~~~~~~l~~~~~~~v~G~v~~~~--~~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1064 MMARFTLSDET-----GALEVVVFGRA-----YEGVSPKLKEDIPLLVLAEVEKGE--ELRVLAQAVWTLEEV 1124 (1220)
T ss_dssp ---CEEEEETT-----EEEEEC------------------CTTCEEEEEEEEC-------CEEEEEEEEHHHH
T ss_pred eEEEEEEEECC-----CCEEEEEcHHH-----HHHHHHHhccCCEEEEEEEEEECC--CcEEEEeeeecHHHH
Confidence 57999999999 99999998763 3333 3589999999999998654 478888888766544
No 114
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=41.44 E-value=7 Score=39.53 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=16.2
Q ss_pred CCC-ccceehhHHHHHHHHcC
Q psy8863 406 MPP-ASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 406 ~pp-~~G~giGieRL~m~l~g 425 (442)
.|+ .+|||||+|||+..+..
T Consensus 329 ~p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 329 APIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp EECEEEEEEEEHHHHHHHHHH
T ss_pred eceEEeeecccHHHHHHHHHH
Confidence 455 56999999999998754
No 115
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=41.03 E-value=48 Score=33.11 Aligned_cols=95 Identities=15% Similarity=0.264 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHh----ccCCceEEEeccccc
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII----GGFNKIFEINKNFRN 194 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~g~~rvf~i~~~FR~ 194 (442)
.|-+.+-+||.++|...|.+--|.+. . +.++.++.|.....|-... ....|+-...+|.|+
T Consensus 6 eiR~~Fl~FF~~kgH~~v~Ssslvp~--~-------------DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~ 70 (441)
T 3hy0_A 6 EIRQAFLDFFHSKGHQVVASSSLVPH--N-------------DPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRA 70 (441)
T ss_dssp HHHHHHHHHHHHTTCEECCCCCSSCS--S-------------CTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECE
T ss_pred HHHHHHHHHHHhCCCeEcCCCCccCC--C-------------CCCceeecccchhhhhhhcCCCCCCCCCccccccceec
Confidence 45566778999999998875555431 1 1122333333322232222 234799999999997
Q ss_pred -------CCC--CCCCCCccchhhhhhccCCH--HHHHHHHHHHHH
Q psy8863 195 -------EGI--SPRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIK 229 (442)
Q Consensus 195 -------E~~--~~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~ 229 (442)
|+. ++||..=|-|| .-++|.|| ++.+..+-+|+-
T Consensus 71 gGKHnDlenVG~t~rHhTfFEML-GNfSFGDYFK~eAI~~Awe~LT 115 (441)
T 3hy0_A 71 GGKHNDLENVGYTARHHTFFEML-GNFSFGDYFKLDAILFAWLLLT 115 (441)
T ss_dssp ETTEECGGGBTTBSSCCSEEEEE-EEEESSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHhhCCCCccccceeec-cccccchhhHHHHHHHHHHHhC
Confidence 222 25999999998 55677775 677777766653
No 116
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=40.40 E-value=39 Score=33.98 Aligned_cols=96 Identities=16% Similarity=0.258 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhCCcEEecCceeecCCCCCCCCceeeccCCCCcceeeecCHHHHHHHHHh----ccCCceEEEeccccc
Q psy8863 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII----GGFNKIFEINKNFRN 194 (442)
Q Consensus 119 ~i~~~ir~ff~~~gF~EV~TPiL~~~~~g~~~~~f~~~~~~~~~~~~L~~Spql~lk~ll~----~g~~rvf~i~~~FR~ 194 (442)
.|-+.+-+||.++|...|.+--|.+.. +.++.++.|.....|-.+. ....|+-...+|.|+
T Consensus 7 eiR~~Fl~FF~~kgH~~vpSsslvp~~---------------DptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRa 71 (465)
T 1yfs_A 7 EIRELFLSFFEKKGHTRVKSAPLVPEN---------------DPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRV 71 (465)
T ss_dssp HHHHHHHHHHHTTTCEECCCCCSSCTT---------------CTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECE
T ss_pred HHHHHHHHHHHhCCCEEecCCCcccCC---------------CCCcceeccchhhhhHHhcCCCCCCCCceecccccccc
Confidence 345566689999999999866665411 0111222222111222221 224799999999995
Q ss_pred C-------C--CCCCCCCccchhhhhhccCCH--HHHHHHHHHHHHH
Q psy8863 195 E-------G--ISPRHNPEFTMIEFYAAYTNY--IWLMKFTEKMIKK 230 (442)
Q Consensus 195 E-------~--~~~rHl~EFtmlE~e~~~~~~--~dl~~~~e~li~~ 230 (442)
- + .++||..=|.|| .-++|.|| ++.+..+-+|+-.
T Consensus 72 g~~hNDlenVG~t~rHhTfFEML-GNfSFGDYFK~eAI~~AwE~LT~ 117 (465)
T 1yfs_A 72 SGKHNDLEQVGYTSRHHTFFEML-GNFSFGDYFKKEAIEYAWEFVTE 117 (465)
T ss_dssp ETTEECGGGBTTBSSCCSEEEEE-EEEESSSCCHHHHHHHHHHHHHH
T ss_pred CCCcccHhhcCCCCCccchheec-cccchhhhhHHHHHHHHHHHHHh
Confidence 3 2 235999999998 55677775 7788888777644
No 117
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=40.19 E-value=29 Score=28.48 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=26.8
Q ss_pred cCCCCCcEEEEEEEEeec----CC----ceeEEEEeEEEEEecc
Q psy8863 44 KNYDIGDIIGAKGTLFKT----NT----GELSIKVSSLKLITKS 79 (442)
Q Consensus 44 ~~L~~gs~V~V~G~v~~~----~~----~~~el~~~~i~vl~~~ 79 (442)
+.|+.|+.|.|+|.+... +. ..++|.|++|.+|++.
T Consensus 84 ~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 84 QYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred hhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 459999999999999742 22 2589999999988763
No 118
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=39.23 E-value=9.4 Score=38.15 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=16.1
Q ss_pred CccceehhHHHHHHHHcCC
Q psy8863 408 PASGCGIGVDRLIMLLTNS 426 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~ 426 (442)
|..|||||+|||+.++...
T Consensus 306 pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 306 PAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CEEEEEEEHHHHHHHHHHT
T ss_pred CeEEEEEcHHHHHHHHHhc
Confidence 5679999999999988743
No 119
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=38.63 E-value=10 Score=37.56 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=15.8
Q ss_pred CccceehhHHHHHHHHcCC
Q psy8863 408 PASGCGIGVDRLIMLLTNS 426 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~ 426 (442)
|.-|||||+|||+.++...
T Consensus 301 pa~Gf~igieRl~~~l~e~ 319 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEAE 319 (421)
T ss_pred CeEEEeecHHHHHHHHHhc
Confidence 4568999999999988753
No 120
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=38.51 E-value=8.3 Score=40.12 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.4
Q ss_pred CCc-cceehhHHHHHHHHcC
Q psy8863 407 PPA-SGCGIGVDRLIMLLTN 425 (442)
Q Consensus 407 pp~-~G~giGieRL~m~l~g 425 (442)
+|+ +|||||+|||+.++..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 565 4899999999988754
No 121
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=38.16 E-value=10 Score=37.72 Aligned_cols=18 Identities=39% Similarity=0.907 Sum_probs=15.2
Q ss_pred CccceehhHHHHHHHHcC
Q psy8863 408 PASGCGIGVDRLIMLLTN 425 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g 425 (442)
|..|||||+|||+.++..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 556899999999998864
No 122
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=38.12 E-value=59 Score=25.80 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=31.2
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC----C----ceeEEEEeEEE
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN----T----GELSIKVSSLK 74 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~----~----~~~el~~~~i~ 74 (442)
.-+.|++..+.. + ...+.|+.||-|.|+|.+.... . ...||.|+++.
T Consensus 53 ~fi~vv~wgk~A--E--~~~~yl~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 53 ARLKVVGWGAVA--Q--ELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEEEEEEETHHH--H--HHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEE
T ss_pred EEEEEEEEhHHH--H--HHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEE
Confidence 458888876532 1 1224599999999999997431 1 34788887653
No 123
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=34.10 E-value=1.5e+02 Score=33.11 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=45.1
Q ss_pred CC-eEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec-CCceeEEEEeEEEEEec
Q psy8863 7 GK-ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT-NTGELSIKVSSLKLITK 78 (442)
Q Consensus 7 g~-~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~-~~~~~el~~~~i~vl~~ 78 (442)
|+ +.-+.|.|-+ ..|.|..-.+. ++.-+.+..|+.|+.|.|.|.+... -.+++.+.+.++..+.+
T Consensus 37 ~~~~~~~~~td~~-----~~~~~k~f~~~--~~~~~~~~~~~~g~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 37 GRTLLTMKITDYT-----NSILVKMFSRD--KEDAELMSGVKKGMWVKVRGSVQNDTFVRDLVIIANDLNEIAA 103 (1041)
T ss_dssp SCEEEEEEEECSS-----CEEEEEEECSS--HHHHHHHHTCCTTCEEEEEEEEEEETTTTEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEeCC-----CCEEEEEeecc--cchHHHHhcCCCCCEEEEEEEEEeccCCcceEEEeeeeEEecc
Confidence 44 4456789999 78777543321 2223445779999999999998754 35678888888876654
No 124
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=32.69 E-value=59 Score=30.78 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=34.2
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEec
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITK 78 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~ 78 (442)
-++|++..+.. -...+ |+.|+.|.|+|.+... +.| .++|.+++|+.|..
T Consensus 177 ~i~vvawg~~A----e~~~~-l~KG~~V~V~GrL~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 177 YIDATLWRDLA----ENMKE-LRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEEEEETHHH----HHHTT-CCTTCEEEEEEEEEEEECC------CEEEEEEEEEEEECCC
T ss_pred EEEEEECCHHH----HHHHh-cCCCCEEEEEEEEeeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 47777775421 11225 9999999999999753 222 58999999999875
No 125
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=32.46 E-value=14 Score=37.82 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=15.4
Q ss_pred CCccceehhHHHHHHHHc
Q psy8863 407 PPASGCGIGVDRLIMLLT 424 (442)
Q Consensus 407 pp~~G~giGieRL~m~l~ 424 (442)
-|..||++|+|||+.++-
T Consensus 388 ~pavGfa~gierl~~~le 405 (517)
T 4g85_A 388 VPCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCcccccchHHHHHHHHH
Confidence 378899999999998773
No 126
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=32.36 E-value=1.3e+02 Score=23.76 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=34.1
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEee-c----CCc----eeEEEEeEEEEEe
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK-T----NTG----ELSIKVSSLKLIT 77 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~-~----~~~----~~el~~~~i~vl~ 77 (442)
..|.|++..+... ...+..|+.|.|.|.+.. . +.| -+|+.|.+++.|.
T Consensus 50 Dfi~ivvw~klAe------~~~~~kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 50 DYLPITISNRLFE------GMNLEVGTRVKIEGQLRSYNRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp EEEEEEEEGGGST------TCCCCTTCEEEEEEEEEEEECC--------EEEEEEEEEEEEEC
T ss_pred cEEEEEEEhHHhh------HHhhcCCCEEEEEEEEEecceEECCCCCEEEEEEEEEEEEEEcc
Confidence 6788999876531 124568999999999953 1 122 4899999998875
No 127
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=32.23 E-value=17 Score=36.54 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=24.6
Q ss_pred CccceehhHHHHHHHHcCCCCccccccC
Q psy8863 408 PASGCGIGVDRLIMLLTNSKNIRDVILF 435 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~~~Irdv~~F 435 (442)
||---|+|+|||++.+-|..|.=|+=+|
T Consensus 215 k~IDTGmGLERla~vlQg~~snYdtDlf 242 (465)
T 1yfs_A 215 PNIDTGMGLERIASVLQGKNSNFEIDII 242 (465)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSTTT
T ss_pred CceecCcCHHHHHHHHcCCCccchhhhH
Confidence 6778999999999999999999888554
No 128
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=32.04 E-value=8.8 Score=41.23 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=25.2
Q ss_pred CccceehhHHHHHHHHcCCCCccccccCC
Q psy8863 408 PASGCGIGVDRLIMLLTNSKNIRDVILFP 436 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~~~Irdv~~FP 436 (442)
+|.--|+|+|||+|.+-|.+|+=|+ +|+
T Consensus 239 ~~iDtG~GlER~~~~lqg~~s~yd~-~f~ 266 (739)
T 2ztg_A 239 YIVDTGYGLERFVWASKGTPTVYDA-IFP 266 (739)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HCH
T ss_pred CeEecCcCHHHHHHHHcCCCchHHh-hHH
Confidence 6778999999999999999999998 664
No 129
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=30.92 E-value=81 Score=27.95 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=32.2
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----C----CceeEEEEeEEEE
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----N----TGELSIKVSSLKL 75 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~----~~~~el~~~~i~v 75 (442)
.-+.|++-.+.. -...+.|+.|+.|.|+|.+... + ...+||.|++|..
T Consensus 53 ~wi~VvawgklA----E~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 53 LFLTCSVWRQAA----ENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEEETHHH----HHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEEEhHHH----HHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 347788875431 1123469999999999999753 1 2358888887754
No 130
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=30.63 E-value=29 Score=29.03 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=34.0
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEE---EEeEEEEEec
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSI---KVSSLKLITK 78 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el---~~~~i~vl~~ 78 (442)
.-+.|++..+.. + ...+.|+.||.|.|+|.+... +.| .+|| ++++|..|..
T Consensus 53 ~~~~v~~wg~~A--e--~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~ 114 (145)
T 1qvc_A 53 EWHRVVLFGKLA--E--VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 114 (145)
T ss_dssp EEEEEEEETHHH--H--HHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCC
T ss_pred EEEEEEEehHHH--H--HHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccC
Confidence 457888876531 1 122459999999999999652 222 3677 6778877764
No 131
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=28.25 E-value=85 Score=28.88 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=35.1
Q ss_pred cEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeecC---C----ceeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN---T----GELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~---~----~~~el~~~~i~vl~~~ 79 (442)
-++|++..+.. -...+.|+.|+.|.|+|.+.... . ..++|.+++|.+|...
T Consensus 53 ~~~v~~~g~~A----e~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 53 YHRVRLLGRQA----EMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEETHHH----HHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEEchHH----HHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 46777765421 11235699999999999996421 1 2478999999998753
No 132
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=27.93 E-value=63 Score=32.20 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=44.8
Q ss_pred CCeEEEEEecCCCCCCCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEE-EeecC------CceeEEEEeEEEEEecc
Q psy8863 7 GKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGT-LFKTN------TGELSIKVSSLKLITKS 79 (442)
Q Consensus 7 g~~~Fi~lrD~~~~~~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~-v~~~~------~~~~el~~~~i~vl~~~ 79 (442)
|++.-++|.|.+ |.|++++..+.+. ..-..|..|+++.|++. |.... .+..||....-+.+.+|
T Consensus 38 g~~~~~~L~De~-----G~I~at~~~~~~~----~f~~~l~eG~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 38 GKLFSVNLLDDS-----GEIKATGFNDAVD----RFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp EEEEEEEEECSS-----CEEEEEEETHHHH----HHTTTCCTTCEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred ceEEEEEEEcCC-----CEEEEEEeHHHHH----HHHHheecCCEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 566678899999 8999999876321 22256999999999974 43332 25788888755555554
No 133
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=27.49 E-value=83 Score=27.01 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=33.5
Q ss_pred ccEEEEEeCC-ccCchhhhhhcCCCCCcEEEEEEEEeec----CC----ceeEEEE----eEEEEEecc
Q psy8863 24 GKIQLYISNE-IIGKNLYTDFKNYDIGDIIGAKGTLFKT----NT----GELSIKV----SSLKLITKS 79 (442)
Q Consensus 24 ~~iQvv~~~~-~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~----~~~el~~----~~i~vl~~~ 79 (442)
.-+.|++..+ .. -...+.|+.|+.|.|+|.+... +. ..+||.| .+|++|+..
T Consensus 71 ~~i~vv~wg~~lA----e~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 71 EWHSVVVFNPHFA----KIALQYLHKGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEEECCHHHH----HHHHHHCCTTCEEEEEEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEeCHHHH----HHHHHhCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 3477777654 21 1122459999999999999753 11 2477877 578888753
No 134
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=26.94 E-value=20 Score=35.75 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=24.0
Q ss_pred CccceehhHHHHHHHHcCCCCccccccC
Q psy8863 408 PASGCGIGVDRLIMLLTNSKNIRDVILF 435 (442)
Q Consensus 408 p~~G~giGieRL~m~l~g~~~Irdv~~F 435 (442)
||---|+|+|||++.+-|..|+=|+=+|
T Consensus 232 k~IDTGmGLERla~vlQg~~snYdtDlf 259 (441)
T 3hy0_A 232 PSVDTAMGLERIAAVLQHVNSNYDIDLF 259 (441)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSHHH
T ss_pred CceecCCCHHHHHHHHcCCCccccchhH
Confidence 5667899999999999999998887444
No 135
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=26.57 E-value=91 Score=28.93 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=23.5
Q ss_pred CCccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec
Q psy8863 22 SNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT 61 (442)
Q Consensus 22 ~~~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~ 61 (442)
.+.++.|++..+.+ ...++||-|.|+|.+...
T Consensus 196 ~Prsi~V~l~~dLv--------d~~~PGDrV~vtGI~~~~ 227 (279)
T 1ltl_A 196 QPRQITVVLEDDLV--------DTLTPGDIVRVTGTLRTV 227 (279)
T ss_dssp CCCEEEEEEEGGGT--------TCCCTTCEEEEEEEEEEE
T ss_pred CCeEEEEEEccccc--------CccCCCCEEEEEEEEEEe
Confidence 34567777765543 578999999999998653
No 136
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=25.96 E-value=16 Score=39.19 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHcCCCCccccccCC
Q psy8863 413 GIGVDRLIMLLTNSKNIRDVILFP 436 (442)
Q Consensus 413 giGieRL~m~l~g~~~Irdv~~FP 436 (442)
|+|+|||++.+-|..|.=|+ +|+
T Consensus 250 GmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 250 GYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred ccCHHHHHHHHcCCCchHHH-HHH
No 137
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=25.48 E-value=95 Score=29.31 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=35.0
Q ss_pred cEEEEEeCCccCchhhhhhcC-CCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEecc
Q psy8863 25 KIQLYISNEIIGKNLYTDFKN-YDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITKS 79 (442)
Q Consensus 25 ~iQvv~~~~~~~~~~~~~~~~-L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~~ 79 (442)
-++|++..+.. -...+. |+.|+.|.|+|.+... +.| .+||.+++|.+|...
T Consensus 53 ~i~vv~~g~~A----e~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 53 YHRVSILGKPA----EWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEESHHH----HHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEEcHHH----HHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 47788875421 112356 8999999999999742 212 478999999998753
No 138
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=24.78 E-value=59 Score=30.00 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=35.0
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEeec----CCc----eeEEEEeEEEEEec
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT----NTG----ELSIKVSSLKLITK 78 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~~~----~~el~~~~i~vl~~ 78 (442)
.-++|++..+.. -... .|+.|+.|.|+|.+... +.| .+||.|+++..|..
T Consensus 172 ~~~~v~~wg~~A----e~~~-~l~KG~~V~V~G~l~~~~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 172 HFLEVQAWRELA----EWAS-ELRKGDGLLVIGRLVNDSWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEEEEEEEHHHH----HHHT-TCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred EEEEEEEEChHH----HHhh-hcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEECcc
Confidence 357777775421 1223 89999999999999752 223 37899999988864
No 139
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=22.85 E-value=1.1e+02 Score=24.61 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=31.8
Q ss_pred cEEEEEeC-CccCchhhhhhcCCCCCcEEEEEEEEeec----C--Cc----eeEEEEe----EEEEEec
Q psy8863 25 KIQLYISN-EIIGKNLYTDFKNYDIGDIIGAKGTLFKT----N--TG----ELSIKVS----SLKLITK 78 (442)
Q Consensus 25 ~iQvv~~~-~~~~~~~~~~~~~L~~gs~V~V~G~v~~~----~--~~----~~el~~~----~i~vl~~ 78 (442)
-+.|++-. +.. -...+.|+.|+.|.|+|.+... + .| .+||.|+ +++.|+.
T Consensus 55 ~~~v~~wg~~~A----e~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 55 WHRIVVYDQNIV----DLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEEECCHHHH----HHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEEchHH----HHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 36677655 321 1122459999999999998632 3 33 4888887 7888765
No 140
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=22.81 E-value=79 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=23.2
Q ss_pred ccEEEEEeCCccCchhhhhhcCCCCCcEEEEEEEEee
Q psy8863 24 GKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60 (442)
Q Consensus 24 ~~iQvv~~~~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 60 (442)
.-+.|++..+.. -...+.|+.|+.|.|+|.+..
T Consensus 53 ~~~~v~~wg~~A----e~~~~~l~KG~~V~VeGrL~~ 85 (168)
T 3afp_A 53 LFLRCNIWREAA----ENVAESLTRGARVIVTGRLKQ 85 (168)
T ss_dssp EEEEEEEEHHHH----HHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEehHHH----HHHHHhCCCCCEEEEEEEEEe
Confidence 357788775421 122356999999999999975
Done!