RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8863
(442 letters)
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 713 bits (1843), Expect = 0.0
Identities = 260/442 (58%), Positives = 334/442 (75%), Gaps = 8/442 (1%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
MLKRVMGK SF +QD SG +IQ +++ +G Y FK +D+GDI+ A+G LF+
Sbjct: 96 MLKRVMGKASFATVQDGSG-----QIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFR 150
Query: 61 TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
TN GELS+K + L+L+ K+LRPLP+KF L++QE +YR RY+DLI+ TR F+ RT+
Sbjct: 151 TNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210
Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
I+SIR FM DFMEVETP+LH PGGA AKPF+THHN+L+M+MFLRIAPELYLKRLI+G
Sbjct: 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVG 270
Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
GF ++FEIN+NFRNEG+SPRHNPEFTM+EFYAAYT+Y WLM FTE++I++ +D +GT
Sbjct: 271 GFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTAT 330
Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNN 300
I YQGR LD ++ F +LTI +AI+KY P Y + L + FL+SELK++ + N
Sbjct: 331 IQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVT-QPAFLN 389
Query: 301 LKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIA 360
LQL LFEET E +LW PT+I +YP E+SPLAR+S+ ITERFELFI G EIA
Sbjct: 390 AGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESD-TVAGITERFELFITGREIA 448
Query: 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
NGFSELNDPE+Q+ RFK Q++ K+ + E + ++D DYI ALEYGMPP GCGIG+DRL+
Sbjct: 449 NGFSELNDPEDQAARFKKQVEQKDAGDEE-AMFFDADYIRALEYGMPPTGGCGIGIDRLV 507
Query: 421 MLLTNSKNIRDVILFPHLRNEN 442
MLLT+S IRDV+LFPHLR E+
Sbjct: 508 MLLTDSPTIRDVLLFPHLRRED 529
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 700 bits (1808), Expect = 0.0
Identities = 231/442 (52%), Positives = 315/442 (71%), Gaps = 13/442 (2%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTD-FKNYDIGDIIGAKGTLF 59
M +R+MGK SF+ LQD G +IQLY++ + + + +Y D FK +D+GDIIGA+GTLF
Sbjct: 74 MTRRIMGKASFVTLQDVGG-----RIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLF 128
Query: 60 KTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQ 119
KT TGELSI + L+L+TK+LRPLP+KF L +QE++YR RY+DLI N+ +R+ F R++
Sbjct: 129 KTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 188
Query: 120 IISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
I+++IR FM FMEVETP++ PGGA A+PFITHHN+L++ M+LRIAPELYLKRL++
Sbjct: 189 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVV 248
Query: 180 GGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTT 239
GGF ++FEIN+NFRNEGIS RHNPEFTM+E Y AY +Y L++ TE + + + + +GTT
Sbjct: 249 GGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT 308
Query: 240 KIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILN 299
K+ Y + DF K FEKLT+ EAIKKY P+ + DL N K+ + I +
Sbjct: 309 KVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEK----- 363
Query: 300 NLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEI 359
+ + +F+E E L PT+IT YP E+SPLAR+++ N IT+RFE FI G EI
Sbjct: 364 SWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRND-VNPEITDRFEFFIGGREI 422
Query: 360 ANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRL 419
NGFSELND E+Q+ RF+ Q++ K + E + +YD DY+ ALEYG+PP +G GIG+DR+
Sbjct: 423 GNGFSELNDAEDQAERFQEQVNAKAAGDDE-AMFYDEDYVTALEYGLPPTAGLGIGIDRM 481
Query: 420 IMLLTNSKNIRDVILFPHLRNE 441
IML TNS IRDVILFP +R +
Sbjct: 482 IMLFTNSHTIRDVILFPAMRPQ 503
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 698 bits (1805), Expect = 0.0
Identities = 205/441 (46%), Positives = 295/441 (66%), Gaps = 13/441 (2%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
M KR MGK F +QD +G +IQ+Y+ + +G+ Y FK D+GDI+G +GT+FK
Sbjct: 66 MTKRGMGKAGFAHIQDVTG-----QIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFK 120
Query: 61 TNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
T GELSIKVSS + +TK+LRPLP K+ L + E +YR RY+DLI+N ++K F R+ I
Sbjct: 121 TKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLI 180
Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIG 180
I S+R +++ + ++EVETP++H GGA A+PFITHHN+L+M +++RIA EL+LKRLI+G
Sbjct: 181 IQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVG 240
Query: 181 GFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTK 240
G K++EI + FRNEGIS RHNPEFTM+E Y AY ++ +MK TE +I I + +GTTK
Sbjct: 241 GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK 300
Query: 241 IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNN 300
I Y L+D + + +L +++AIK+Y + + + K+ + +
Sbjct: 301 IQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQM-SDEEARELAKEHGVEVAP-----H 354
Query: 301 LKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIA 360
+ + FE+ E KL PT+I +P EISPLA+K+ ++ T+RFELFI+G E A
Sbjct: 355 MTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNP-DDPRFTDRFELFIVGREHA 413
Query: 361 NGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
N F+ELNDP +Q RF+ Q+ + + N E + D D++ ALEYGMPP G GIGVDRL+
Sbjct: 414 NAFTELNDPIDQRQRFEEQLKEREQGNDE-AHEMDEDFLEALEYGMPPTGGLGIGVDRLV 472
Query: 421 MLLTNSKNIRDVILFPHLRNE 441
MLLTNS +IRDV+LFP +R++
Sbjct: 473 MLLTNSPSIRDVLLFPQMRHK 493
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 654 bits (1690), Expect = 0.0
Identities = 170/453 (37%), Positives = 260/453 (57%), Gaps = 19/453 (4%)
Query: 1 MLKRVMG-KISFIMLQDTSGPDSNGKIQLYIS--NEIIGKNLYTDFKNYDIGDIIGAKGT 57
KR G K+ F L+ K+Q+ + N + GDIIG +G
Sbjct: 65 HAKRASGGKLIFYDLRGEGV-----KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGN 119
Query: 58 LFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKR 117
KT GELSI + L++ L LP+ L ++E +YR RY+DLI+N+ R+ F R
Sbjct: 120 PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIR 179
Query: 118 TQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRL 177
++II+ IR F+++ F+E+ETP+++ PGGA+AKPFIT+HN L+M +++RIAPELY K L
Sbjct: 180 SKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKML 239
Query: 178 IIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIG 237
++GG ++++EI + FRNEGI HNPEFT EFY AY +Y LM+ TEKM+ ++ G
Sbjct: 240 VVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITG 299
Query: 238 TTKIDY-------QGRLLDFSKSFEKLTIIEAIKKYT-PQYNEIDLQNKLFLKSELKKIN 289
+ K+ Y Q +DF+ F ++ ++E ++K + E +L + L I
Sbjct: 300 SYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDIC 359
Query: 290 PKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITER 349
+ L L E E NPT+I ++P +SPLA+ + +TER
Sbjct: 360 VAKA-VECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKW-HRSKEGLTER 417
Query: 350 FELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPA 409
FELF++ EI N ++ELNDP Q F+ Q K + E + + D ++ ALEYG+PP
Sbjct: 418 FELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDE-AMFIDENFCTALEYGLPPT 476
Query: 410 SGCGIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
+G G+G+DR+ M LT+S NI++V+LFP ++ E+
Sbjct: 477 AGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED 509
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 468 bits (1206), Expect = e-165
Identities = 97/337 (28%), Positives = 161/337 (47%), Gaps = 31/337 (9%)
Query: 110 TRKVFKKRTQIISSIRHFMEKNDFMEVETPIL-HNKPGGAIAKPFITHH----NSLNMKM 164
+ KR I++ IR F +EVETP + PF T +S M +
Sbjct: 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNL 91
Query: 165 FLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFT 224
+L +PE ++KRL++ G +F++ ++FRNE + HNPEFTM+E+Y + + LM
Sbjct: 92 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEV 151
Query: 225 EKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSE 284
+ ++++++ DC + YQ ++F + I+ + Q L+
Sbjct: 152 DDLLQQVL-DCPAAESLSYQ-------QAFLRYLEIDPLSADKTQ-----------LREV 192
Query: 285 LKKINPKFNQKKILNNLKKDILQLMLFEETTETKLW--NPTYITNYPTEISPLARKSNIE 342
K++ +D L +LF E + PT++ ++P + LA+ S E
Sbjct: 193 AAKLDLSNVADT---EEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIST-E 248
Query: 343 NNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHAL 402
++ + ERFE++ G E+ANGF EL D EQ RF+ + D + I AL
Sbjct: 249 DHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLP-QHPIDQNLIEAL 307
Query: 403 EYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLR 439
+ GMP SG +GVDRL+ML ++ + +VI F R
Sbjct: 308 KVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 175 bits (445), Expect = 3e-50
Identities = 94/463 (20%), Positives = 180/463 (38%), Gaps = 81/463 (17%)
Query: 3 KRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN 62
+ +G I F+ ++D G +Q+ + + L+ D++ +G + T
Sbjct: 28 VKDLGGIKFLWIRDRDG-----IVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP 82
Query: 63 T--GELSIKVSSLKLITKSLRPLP--NKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRT 118
I + ++ ++ PLP + + + + +R++DL E +FK R+
Sbjct: 83 KAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEV-MAIFKIRS 141
Query: 119 QIISSIRHFMEKNDFMEVETPILHNKP--GGAIAKPFITHHNSLNM--------KMFLRI 168
+ ++R F +N F+E+ TP + GG + FL
Sbjct: 142 SVFKAVRDFFHENGFIEIHTPKIIATATEGGT------------ELFPMKYFEEDAFLAQ 189
Query: 169 APELYLKRLIIGGFNKIFEINKNFRNEGIS--PRHNPEFTMIEFYAAY-TNYIWLMKFTE 225
+P+LY + ++ G ++++EI FR E RH E I+ A+ + +M F E
Sbjct: 190 SPQLYKQIMMASGLDRVYEIAPIFRAEE-HNTTRHLNEAWSIDSEMAFIEDEEEVMSFLE 248
Query: 226 KMIKKIIMDCIGTTK--IDYQGRLLDFSKS-FEKLTIIEAI----KKYTPQYNEIDLQNK 278
+++ I +D L+ K F +++ +A+ D+
Sbjct: 249 RLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDID-- 306
Query: 279 LFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARK 338
+E +++ L + E + ++ YP+E P
Sbjct: 307 ----TEGERL---------------------LGKYMMENENAPLYFLYQYPSEAKPFYIM 341
Query: 339 SNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQ-IDLKNEINGELSSYYDTD 397
I F+L G EI++G + + + K + ++ + S+
Sbjct: 342 KYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE--------SFEF-- 391
Query: 398 YIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440
Y+ A YGMPP G G+G +RLI + + NIR+VILFP R
Sbjct: 392 YLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRR 434
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 173 bits (442), Expect = 7e-50
Identities = 93/462 (20%), Positives = 185/462 (40%), Gaps = 88/462 (19%)
Query: 3 KRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN 62
R +G FI+L+D +G Q+ + + + + +I +G +
Sbjct: 28 LRDLGGKKFIILRDKTG-----LGQVVVDK---NSSAFGISQELTQESVIQVRGIVKADK 79
Query: 63 T--GELSIKVSSLKLITKSLRPLP--NKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRT 118
+ + + L++K+ PLP + ++ + + R R +DL + + V K ++
Sbjct: 80 RAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLR-RQEMQAVIKIQS 138
Query: 119 QIISSIRHFMEKNDFMEVETPILHNKP--GGAIAKPFITHHNSLNM--------KMFLRI 168
+ + R + K F+E+ TP + GGA + + FL
Sbjct: 139 LALKAFRETLYKEGFIEIFTPKIIASATEGGA------------QLFPVIYFGKEAFLAQ 186
Query: 169 APELYLKRLIIGGFNKIFEINKNFRNEGIS--PRHNPEFTMIEFYAAYTNYIWLMKFTEK 226
+P+LY K L+ G ++FE+ +R E S P H EF ++ A+ +Y +M+ EK
Sbjct: 187 SPQLY-KELMAGVVERVFEVAPAWRAEE-SDTPFHLAEFISMDVEMAFADYNDVMQLLEK 244
Query: 227 MIKKIIMDCIGTTK--IDYQGRLLD-FSKSFEKLTIIEAI----KKYTPQYNEIDLQNKL 279
++ I+ K + ++L EAI K D+
Sbjct: 245 ILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYNIKFGDDIGT-- 302
Query: 280 FLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKS 339
EL+ +N + + +I ++P++ P KS
Sbjct: 303 ---PELRILNEELKED--------------------------LYFIVDWPSDARPFYTKS 333
Query: 340 NIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQ-IDLKNEINGELSSYYDTDY 398
EN ++E F+L EI +G + + E K + + + S+ +
Sbjct: 334 KSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPE--------SFEF--F 383
Query: 399 IHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440
+ +YGMPP +G G+G+ RL+++LT +++++++ FP +
Sbjct: 384 LKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKK 425
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 160 bits (408), Expect = 2e-44
Identities = 99/485 (20%), Positives = 174/485 (35%), Gaps = 96/485 (19%)
Query: 3 KRVMG-KISFIMLQDTSGPDSNGKIQLYISNE---IIGKNLYTDFKNYDIGDIIGAKGTL 58
R G ++F+ L+ + IQ + I KN+ + ++ I+ +G +
Sbjct: 48 TRQQGATLAFLTLRQQAS-----LIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIV 102
Query: 59 FKTNT-------GELSIKVSSLKLITKSLRPLP--------------NKFQKLSNQEIKY 97
K + L I ++ + I+++ LP + N + +
Sbjct: 103 KKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRL 162
Query: 98 RHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKP--GGAIAKPFIT 155
+R IDL + +F+ + + R ++ F EV TP L P GG+
Sbjct: 163 DYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGS------- 214
Query: 156 HHNSLNMKMFLRIA-----PELYLKRLIIGGFNKIFEINKNFRNE-GISPRHNPEFTMIE 209
+ + F A P+ ++LI+ F +++EI FR E + RH EFT ++
Sbjct: 215 --SVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLD 272
Query: 210 FYAAY-TNYIWLMKFTEKMIKKII-------MDCIGTTKIDYQGRLLDFSKS--FEKLTI 259
A+ +Y ++ ++ I I + Y K +LT
Sbjct: 273 MEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTY 332
Query: 260 IEAIK----KYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETT 315
E I+ + DL + N KF K + + D
Sbjct: 333 KEGIEMLRAAGKEIGDFEDLSTE----------NEKFLGKLVRDKYDTDFY--------- 373
Query: 316 ETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVR 375
+ +P EI P + N + ++ F+ G EI +G ++D R
Sbjct: 374 --------ILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQER 425
Query: 376 FKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILF 435
K ++ E D Y YG PP +G GIG++R++M + KNIR LF
Sbjct: 426 MKAH-----GLSPEDPGLKD--YCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLF 478
Query: 436 PHLRN 440
P
Sbjct: 479 PRDPK 483
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 158 bits (402), Expect = 4e-44
Identities = 91/464 (19%), Positives = 180/464 (38%), Gaps = 96/464 (20%)
Query: 3 KRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN 62
+R +G+I F++L+D SG +Q+ + K + +G + +
Sbjct: 25 RRDLGRIQFLLLRDRSG-----VVQV----------VTGGLKLPLPESALRVRGLVVENA 69
Query: 63 T--GELSIKVSSLKLITKSLRPLP---NKFQKLSNQEIKYRHRYIDLIINENTRKVFKKR 117
G L ++ +++++ +L P P K + +N + +RY+ L E R K +
Sbjct: 70 KAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLR-GEKARAPLKVQ 128
Query: 118 TQIISSIRHFMEKNDFMEVETPILHNKP--GGAIAKPFITHHNSLNM--------KMFLR 167
++ R ++++ DF E+ TP + GG+ + + +L
Sbjct: 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGS------------GLFGVDYFEKRAYLA 176
Query: 168 IAPELYLKRLIIGGFNKIFEINKNFRNEGIS--PRHNPEFTMIEFYAAY-TNYIWLMKFT 224
+P+LY K++++G F +++E+ +R E RH E+ ++ + + LM+
Sbjct: 177 QSPQLY-KQIMVGVFERVYEVAPVWRMEE-HHTSRHLNEYLSLDVEMGFIADEEDLMRLE 234
Query: 225 EKMIKKIIMDCIGTTK--IDYQGRLLDFSKS-FEKLTIIEAI---KKYTPQYNEIDLQNK 278
E ++ +++ + + T I G +LT EA K+ DL
Sbjct: 235 EALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSE- 293
Query: 279 LFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPL-AR 337
+ + ++ + ++T YP + P
Sbjct: 294 ----EAERLLGEYAKERWGSD----------------------WLFVTRYPRSVRPFYTY 327
Query: 338 KSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQ-IDLKNEINGELSSYYDT 396
E + T F+L G EI +G ++ EE K + +D + +++
Sbjct: 328 P---EEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPE--------AFHG- 375
Query: 397 DYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440
Y+ +YGMPP G IG +RL L N+R FP R+
Sbjct: 376 -YLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRH 418
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 142 bits (359), Expect = 2e-37
Identities = 90/440 (20%), Positives = 161/440 (36%), Gaps = 65/440 (14%)
Query: 20 PDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKS 79
+ + + I + +++ + L +L+ + +
Sbjct: 151 SLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLL 210
Query: 80 LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETP 139
+ +Q+ + +R +DL +F+ ++ R F+ F+E+ TP
Sbjct: 211 KEKASAQKYVKVSQDTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTSQKFVEIHTP 269
Query: 140 IL--HNKPGGAIAKPFITHHNSLNMKMFLRIA-----PELYLKRLIIGGFNKIFEINKNF 192
L + GG+ N +K F R A P+LY + I+G F K+FE+ F
Sbjct: 270 KLIGCSSEGGS---------NIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVF 320
Query: 193 RNE-GISPRHNPEFTMIEFYAAY-TNYIWLMKFTEKMIKKIIMDCIGTTK--IDYQGRLL 248
R E + RH EF ++ NY + EK+ I + + +
Sbjct: 321 RAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQY 380
Query: 249 DFSKS----FEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKD 304
F F +LT EAI+ L++ + I D
Sbjct: 381 PFEDLIYRPFLRLTYKEAIE---------------MLRASGETIGDY-----------DD 414
Query: 305 I---LQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIAN 361
++ L E + + +P I P +I++ N + +++F+ G EI +
Sbjct: 415 FTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITS 474
Query: 362 GFSELNDPEEQSVRFKNQ-IDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLI 420
G ++DPE R + +D + D YI + +G P +GCGIG++R+
Sbjct: 475 GAQRIHDPEFLMKRCIEKGVDPA--------TLKD--YIESFRFGSWPHAGCGIGLERIT 524
Query: 421 MLLTNSKNIRDVILFPHLRN 440
ML NIR V LFP
Sbjct: 525 MLYLGIPNIRKVTLFPRDPI 544
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 140 bits (354), Expect = 3e-37
Identities = 87/456 (19%), Positives = 166/456 (36%), Gaps = 71/456 (15%)
Query: 3 KRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN 62
+GK F+ ++D++G +Q ++ ++G+ + K + +G +
Sbjct: 28 NMRVGKKIFLWIRDSTG-----IVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE 82
Query: 63 T--GELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQI 120
G + V L++I + + ++ E+ +R++ + + K + +
Sbjct: 83 RAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIR-TPKASAIMKVKETL 141
Query: 121 ISSIRHFMEKNDFMEVETPIL-HNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLII 179
I + R ++ K+ + EV PIL G A F + +L + +LYL+ I
Sbjct: 142 IMAAREWLLKDGWHEVFPPILVTGAVEGG-ATLFKL--KYFDKYAYLSQSAQLYLE-AAI 197
Query: 180 GGFNKIFEINKNFRNEGIS--PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIG 237
G K++ + +FR E S RH EF +E AA+ + +MK E+++ ++ +
Sbjct: 198 FGLEKVWSLTPSFRAEK-SRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLE 256
Query: 238 TTKIDYQ--GRLLDF----SKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPK 291
K + + L F +++ EAI
Sbjct: 257 LRKKEIEMFRDDLTTLKNTEPPFPRISYDEAID--------------------------- 289
Query: 292 FNQKKILNNLKKDILQLMLFEETTETKLWN----PTYITNYPTEISPLARKSNIENNNIT 347
IL + ++ E L P ++ YP I K + +
Sbjct: 290 -----ILQSKGVNVEWGDDLGADEERVLTEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKV 344
Query: 348 ERFELFI---IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEY 404
++ G EI G +D ++ R E + Y Y+ Y
Sbjct: 345 LASDMLAPEGYG-EIIGGSQREDDYDKLLNRIL-------EEGMDPKDYEW--YLDLRRY 394
Query: 405 GMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLRN 440
G P SG G+GV+RL+ + +IR LFP
Sbjct: 395 GSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPA 430
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 132 bits (335), Expect = 2e-34
Identities = 95/457 (20%), Positives = 178/457 (38%), Gaps = 73/457 (15%)
Query: 3 KRVMGK-ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT 61
R K + F+ L+D SG Q I + + + K + G L
Sbjct: 42 IRKARKTLIFVELRDGSG-----YCQCVIFGKELCE--PEKVKLLTRECSLEITGRLNAY 94
Query: 62 NTGELS----------IKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTR 111
++V+ K+I +S L N K S+ K ++R+I + +E+T+
Sbjct: 95 AGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIR-SEHTQ 153
Query: 112 KVFKKRTQIISSIRHFMEKNDFMEVETPIL-HNKPGGAIAKPFITHHNSLNMKMFLRIAP 170
+V + R++I R + N F E++ P + + G + F N +L +
Sbjct: 154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGG-STLFKL--QYFNEPAYLTQSS 210
Query: 171 ELYLKRLIIGGFNKIFEINKNFRNEGIS--PRHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228
+LYL+ +I K F + ++R E S RH E+ +E + ++ L+ E ++
Sbjct: 211 QLYLE-SVIASLGKSFCMLSSYRAEQ-SRTVRHLAEYLHLEAELPFISFEDLLNHLEDLV 268
Query: 229 KKIIMDCIGTTKIDYQ--GRLLDFSKS-FEKLTIIEAIKKYTPQYNEIDLQNKLFLKSEL 285
+I + + + L F+++T +AIK
Sbjct: 269 CTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKY-------------------C 309
Query: 286 KKINPKFNQKKILNNLKKDILQLMLFEETTETKLWN----PTYITNYPTEISPLARKSNI 341
K +DI E E ++ + P ++ ++P+++
Sbjct: 310 NDHGILNKDKPF--EYGEDI------SEKPERQMTDEIGCPIFMIHFPSKMKAFYMSKVP 361
Query: 342 ENNNITERFELFI--IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYI 399
+ ++TE +L + +G EI G + + +E +K +N + YY Y
Sbjct: 362 GHPDLTESVDLLMPGVG-EIVGGSMRIWNYDELMGAYKAN-----GLNPD--PYY--WYT 411
Query: 400 HALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
+YG P G G+GV+RL+M L +IR V L+P
Sbjct: 412 QQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYP 448
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 129 bits (327), Expect = 2e-33
Identities = 90/456 (19%), Positives = 181/456 (39%), Gaps = 73/456 (16%)
Query: 3 KRVMGK-ISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKT 61
R GK + F +L+D +G +Q+ + +++ D + + G + +
Sbjct: 23 MRRQGKSLMFFILRDGTG-----FLQVLLMDKLCQ---TYDALTVNTECTVEIYGAIKEV 74
Query: 62 NTGELS-----IKVSSLKLITKS-LRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFK 115
G+ + + K+I + + N + ++ + +R++ + N + +
Sbjct: 75 PEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGE-NAAALLR 133
Query: 116 KRTQIISSIRHFMEKNDFMEVETPIL-HNKPGGAIAKPFITHHNSLNMKMFLRIAPELYL 174
R ++R ++EV P L + G + F + + FL + +LYL
Sbjct: 134 LRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGG-STLFNL--DYFGEQSFLTQSSQLYL 190
Query: 175 KRLIIGGFNKIFEINKNFRNEG-ISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIM 233
+ I +F I +++R E + RH E+ +E + LM+ E+++ +
Sbjct: 191 E-TCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVD 249
Query: 234 DCIGTTKIDYQGRLLDF-----SKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKI 288
+ + ++ + F ++ +AIK L++
Sbjct: 250 RLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKW-------------------LQEH 290
Query: 289 NPKFNQKKILNNLK--KDILQLMLFEETTETKLWN----PTYITNYPTEISPLARKSNIE 342
N + + N +DI E E + + P + +P+EI + + +
Sbjct: 291 NVE---NEFGNTFTYGEDI------AEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAQ 341
Query: 343 NNNITERFELFI--IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIH 400
+N +TE +L + +G EI G + +E S FK EI+ + YY Y+
Sbjct: 342 DNTLTESVDLLMPGVG-EIVGGSMRIWKFDELSKAFK-----NVEIDPK--PYY--WYLD 391
Query: 401 ALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
YG P G G+G++R I LTN+ +IRDV L+P
Sbjct: 392 QRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYP 427
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 119 bits (301), Expect = 5e-31
Identities = 63/336 (18%), Positives = 116/336 (34%), Gaps = 76/336 (22%)
Query: 113 VFKKRTQIISSIRHFMEKNDFMEVETPIL-----HNKPGGAIAKPFITHHNSLNMKMFLR 167
+T+I+ + F K F + I+ P A +KM L
Sbjct: 14 TLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLT 73
Query: 168 IAPELYLKRLIIGGFNKIFEINKNFRNEGIS---PRHNPEFTMIEFYAAYTNYIWLMKFT 224
+ L+ + I G KIF ++ N R E RH EFT ++F +M+
Sbjct: 74 HSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLI 133
Query: 225 EKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSE 284
E+++ + T + +K FE E ++++ D +
Sbjct: 134 ERLVYGLFRKAEEWTGRE-----FPKTKRFEVFEYSEVLEEF-----GSDEK-------- 175
Query: 285 LKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENN 344
++ P +I N P E R E +
Sbjct: 176 ------------------------------ASQEMEEPFWIINIPREF--YDR----EVD 199
Query: 345 NITERFELFI---IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHA 401
++L + G E+A+G + E+ + + + S+ Y+
Sbjct: 200 GFWRNYDLILPYGYG-EVASGGEREWEYEKIVAKIR-------KAGLNEDSFR--PYLEI 249
Query: 402 LEYG-MPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
+ G + P++G GIGV+RL+ + +K+I +V FP
Sbjct: 250 AKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 285
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 80.2 bits (199), Expect = 3e-16
Identities = 57/214 (26%), Positives = 109/214 (50%), Gaps = 33/214 (15%)
Query: 63 TGELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIIS 122
TGE+ + SSL +I ++ LP ++ +E + ++RY+DL + K R +I S
Sbjct: 89 TGEIEVLASSLTIINRA-DVLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITS 146
Query: 123 SIRHFMEKNDFMEVETPILHNK--PGGAIAKPFI----THHNSLNMKMF--LRIAPELYL 174
+R FM+ + F+++ETP+L K P G A+ ++ H F L +P+L+
Sbjct: 147 LVRRFMDDHGFLDIETPML-TKATPEG--ARDYLVPSRVHKGK-----FYALPQSPQLFK 198
Query: 175 KRLIIGGFNKIFEINKNFRNEGISPRHN--PEFTMIEFYAAYTNYIWLMKFTEKMIKKII 232
+ L++ GF++ ++I K FR+E + R + PEFT I+ ++ + + E +++ +
Sbjct: 199 QLLMMSGFDRYYQIVKCFRDEDL--RADRQPEFTQIDVETSFMTAPQVREVMEALVRHLW 256
Query: 233 MDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKY 266
++ G +D F +T EA ++Y
Sbjct: 257 LEVKG----------VDLGD-FPVMTFAEAERRY 279
Score = 64.4 bits (158), Expect = 3e-11
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 401 ALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
AL+YG PP +G G+DRL MLLT + NIRDVI FP
Sbjct: 520 ALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 77.5 bits (192), Expect = 2e-15
Identities = 48/229 (20%), Positives = 115/229 (50%), Gaps = 54/229 (23%)
Query: 63 TGELSIKVSSLKLITKSLRPLP--------NKFQKLSNQEIKYRHRYIDLIINENTRKVF 114
TG + +++S+L+++ ++ + P + +K +++E++ ++RY+DL ++
Sbjct: 87 TGRVEVELSALEVLAEA-KTPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENL 144
Query: 115 KKRTQIISSIRHFMEKNDFMEVETPILHNK--PGGAIAKPFITHHNSLNMKMFL---RI- 168
+ R ++I +I F+++ F++VETP L K P GA + FL R
Sbjct: 145 RLRHRVIKAIWDFLDREGFVQVETPFL-TKSTPEGA--------------RDFLVPYRHE 189
Query: 169 ---------APELYLKRLIIGGFNKIFEINKNFRNEGISPRHN--PEFTMIEFYAAYTNY 217
+P+L+ + L++ G ++ F+I + FR+E + R + P+FT ++ ++
Sbjct: 190 PGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL--RADRQPDFTQLDLEMSFVEV 247
Query: 218 IWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKY 266
+++ E+++ + + +G ++ F +L+ EA+++Y
Sbjct: 248 EDVLELNERLMAHVFREALG----------VELPLPFPRLSYEEAMERY 286
Score = 63.7 bits (156), Expect = 4e-11
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 401 ALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
ALEYG PP G G+DRL+ L+T S +IR+VI FP
Sbjct: 514 ALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFP 549
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 3e-12
Identities = 49/279 (17%), Positives = 101/279 (36%), Gaps = 69/279 (24%)
Query: 73 LKLITKSLRPLPNKFQ--------KLSN---------QEIKYRHRYIDL-IINENTRKVF 114
L +I +S+R + KL+ + +YR + L + + +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HI- 387
Query: 115 KKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAK---PFITHHNSLNMKMFLRIAPE 171
T ++S I + K+D M V LH + K S+ +++ +++ E
Sbjct: 388 --PTILLSLIWFDVIKSDVMVVVNK-LHKY--SLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 172 LYLKRLIIGGFNKIFEINKNFRNEGISP------------RHNPEFTMIE----FYAAYT 215
L R I+ +N I K F ++ + P H E F +
Sbjct: 443 YALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 216 NYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDL 275
++ +L +KI D T + G +L+ ++ +K Y P + D
Sbjct: 499 DFRFLE-------QKIRHDS---TAWNASGSILN---------TLQQLKFYKPYICDNDP 539
Query: 276 QNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEET 314
+ + + + + PK + ++ + D+L++ L E
Sbjct: 540 KYERLVNA-ILDFLPKIEE-NLICSKYTDLLRIALMAED 576
Score = 36.4 bits (83), Expect = 0.021
Identities = 52/361 (14%), Positives = 109/361 (30%), Gaps = 105/361 (29%)
Query: 97 YRHRYIDLIINENTRKVFKKRTQIISSIRH-FMEKNDFMEVETPILHNKPGGAIAKPFIT 155
+ H ++D E+ + +K I+S F++ D +V+ + P ++K I
Sbjct: 2 HHHHHMDFETGEHQYQ-YKD---ILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEID 52
Query: 156 HHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYT 215
H + K RL +K E+ + F E +
Sbjct: 53 H--IIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---------------- 89
Query: 216 NYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDL 275
NY +LM I + + + + Y Q + +
Sbjct: 90 NYKFLMS-------PIKTEQRQPSMMT---------------------RMYIEQRDRLYN 121
Query: 276 QNKLFLKSELKKINPKFNQKKILNNLK--------------KDILQLM-LFEETTETKLW 320
N++F K + ++ P ++ L L+ K + L + K+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 321 NPTY---ITNYPTEISPLARKSNIENN---NITERFELFIIGNEIANGFSELNDPEEQSV 374
+ + N + + L + N T R + +N ++ + +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------SDHSSNIKLRIHSIQAELR 235
Query: 375 RFKNQIDLKNE--INGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDV 432
R +N + L + + +A C + I+L T K + D
Sbjct: 236 RLLKSKPYENCLLV---LLNVQNAKAWNAFNL------SC-----K-ILLTTRFKQVTDF 280
Query: 433 I 433
+
Sbjct: 281 L 281
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 59.9 bits (145), Expect = 3e-10
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 18/143 (12%)
Query: 84 PNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPIL-- 141
F++L ++ + R + + I E ++ I F F+E+++PIL
Sbjct: 49 GKPFRELESELLSRRKKDLQQIYAEERENY---LGKLEREITRFFVDRGFLEIKSPILIP 105
Query: 142 ---HNKPGGAIAKPFITHHNSLNMKMFLRIAPE--------LYLKRLIIGGFNKIFEINK 190
+ G ++ LR P L + KIFEI
Sbjct: 106 LEYIERMGIDNDTELSKQIFRVDKNFCLR--PMLTPNLYNYLRKLDRALPDPIKIFEIGP 163
Query: 191 NFRNEGISPRHNPEFTMIEFYAA 213
+R E H EFTM+ F+
Sbjct: 164 CYRKESDGKEHLEEFTMLVFWQM 186
Score = 29.5 bits (66), Expect = 2.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 408 PASGCGIGVDRLIMLLTNSKNIRD 431
P G G G++RL+ + + KNI+
Sbjct: 252 PWIGAGFGLERLLKVKHDFKNIKR 275
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 41.4 bits (97), Expect = 3e-04
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 87 FQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHN--- 143
FQ + +Q + R+++ + R ++ + + + F++V TP +
Sbjct: 46 FQGIEHQLMSQGKRHLEQLRTVKHRPAL---LELEEKLAKALHQQGFVQVVTPTIITKSA 102
Query: 144 --KPGGAIAKPFITHHNSLNMKMFLR--IAPELYLKRLIIGGFN----KIFEINKNFRNE 195
K P + L+ K LR +AP LY + +IFEI +R E
Sbjct: 103 LAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKE 162
Query: 196 GISPRHNPEFTMIEFY 211
+H EFTM+
Sbjct: 163 SQGAQHLNEFTMLNLT 178
Score = 29.0 bits (65), Expect = 2.5
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 362 GFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIM 421
G E E SV + + +D+ S ++ P G G G++RL+M
Sbjct: 203 GIREFELVTESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFDPWVGLGFGLERLLM 262
Query: 422 LLTNSKNIRDV 432
+ +++++ +
Sbjct: 263 IREGTQHVQSM 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 8e-04
Identities = 58/320 (18%), Positives = 87/320 (27%), Gaps = 130/320 (40%)
Query: 148 AIA-KPFITHHNSLNMKMFLRIAPELY-----LKRLIIGGFNKIF-EINKNF--RNEGIS 198
A + +P H SL L + + L+ FNKI E + F +E +
Sbjct: 3 AYSTRPLTLSHGSLEHV-LL-VPTASFFIASQLQE----QFNKILPEPTEGFAADDEPTT 56
Query: 199 PRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLT 258
P E + Y+ L++ SK
Sbjct: 57 P--------AELVGKFLGYV--------------------------SSLVEPSKV----- 77
Query: 259 IIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDI----LQLMLFEET 314
Q++++ L L +F L DI +L+ +T
Sbjct: 78 ---------GQFDQV-------LNLCLT----EFEN-CYLEG--NDIHALAAKLLQENDT 114
Query: 315 TETKLWNPTYITNY---------PTEI---SPLARKSNIENN----------NITERF-E 351
T K I NY P + S L R N N + F E
Sbjct: 115 TLVKTKE--LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 352 L-------------FIIGNEIANGFSEL-NDPEEQSVRFKNQIDLKNEINGELSSYYDTD 397
L I A SEL + F +++ + S+ D D
Sbjct: 173 LRDLYQTYHVLVGDLI--KFSAETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKD 229
Query: 398 YI-HALEYGMPPASGCGIGV 416
Y+ P S IGV
Sbjct: 230 YLLSI------PISCPLIGV 243
Score = 33.1 bits (75), Expect = 0.25
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 43/132 (32%)
Query: 239 TKIDYQGRLLDFSKSFEKLTI------------IEAIKKYTPQYNEIDLQNK--LFLKSE 284
++I + R L FS F L + + I K DL F +
Sbjct: 405 SRIPFSERKLKFSNRF--LPVASPFHSHLLVPASDLINK--------DLVKNNVSFNAKD 454
Query: 285 LKKINPKF------NQKKILNNLKKDILQLML-----FEETTETKLWNPTYITNY-PTEI 332
+ +I P + + + + ++ + I+ ++ +E TT+ K T+I ++ P
Sbjct: 455 I-QI-PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK---ATHILDFGPGGA 509
Query: 333 SPLAR--KSNIE 342
S L N +
Sbjct: 510 SGLGVLTHRNKD 521
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.12
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 34/62 (54%)
Query: 282 KSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISP-LARKSN 340
K LKK+ +L KL+ + +P LA K+
Sbjct: 19 KQALKKLQ---------ASL----------------KLYAD--------DSAPALAIKAT 45
Query: 341 IE 342
+E
Sbjct: 46 ME 47
Score = 29.9 bits (66), Expect = 1.1
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 252 KSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELK 286
++ +KL ++K Y D L +K+ ++
Sbjct: 20 QALKKLQ--ASLKLYAD-----DSAPALAIKATME 47
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 33.4 bits (76), Expect = 0.18
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 20/147 (13%)
Query: 83 LPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPIL- 141
+ + + + K+ K ++ S++ + ++ L
Sbjct: 106 MAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
Query: 142 ------HNKPGGAIAK------PFITHHNSLNMKMFLR----IAPELYLKRLIIGGFN-- 183
K P +++ K+ LR L + L+
Sbjct: 166 LEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPF 225
Query: 184 KIFEINKNFRNEGIS-PRHNPEFTMIE 209
K+F I++ FR E H +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS 252
Score = 32.6 bits (74), Expect = 0.25
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 413 GIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
G+GV+RL M+ N ++R+ + E+
Sbjct: 338 GLGVERLAMISGNFADVRE--MVYPQFYEH 365
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 32.9 bits (75), Expect = 0.24
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 184 KIFEINKNFRNEGISPRHNPEFTMIE 209
K F I++ FRNE + H EF IE
Sbjct: 349 KYFSIDRVFRNETLDATHLAEFHQIE 374
Score = 27.9 bits (62), Expect = 7.2
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 413 GIGVDRLIMLLTNSKNIRDVILFPH 437
G+ ++R M+ NIR+ L H
Sbjct: 458 GLSLERPTMIKYGINNIRE--LVGH 480
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 32.6 bits (74), Expect = 0.28
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 413 GIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
G+GV+RL M+ N ++R+ + E+
Sbjct: 338 GLGVERLAMISGNFADVRE--MVYPQFYEH 365
Score = 29.6 bits (66), Expect = 2.4
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 20/147 (13%)
Query: 83 LPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPIL- 141
+ + + + K+ K ++ S++ + ++ L
Sbjct: 106 MAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
Query: 142 ------HNKPGGAIAK------PFITHHNSLNMKMFLR----IAPELYLKRLIIGGFN-- 183
K P +++ K+ LR L + L+
Sbjct: 166 LEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPF 225
Query: 184 KIFEINKNFRNEGIS-PRHNPEFTMIE 209
K+F I++ FR E H +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS 252
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 32.2 bits (74), Expect = 0.36
Identities = 4/23 (17%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 403 EYGMPPASGCG--IGVDRLIMLL 423
G +G + +LL
Sbjct: 299 LMSGESVPAVGFGMGDAVISLLL 321
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 32.3 bits (73), Expect = 0.39
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 20/147 (13%)
Query: 83 LPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPIL- 141
+ + + + K+ K ++ S++ + ++ L
Sbjct: 106 MAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
Query: 142 ------HNKPGGAIAK------PFITHHNSLNMKMFLR----IAPELYLKRLIIGGFN-- 183
K P +++ K+ LR L + L+
Sbjct: 166 LEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPF 225
Query: 184 KIFEINKNFRNEGIS-PRHNPEFTMIE 209
K+F I++ FR E H +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS 252
Score = 32.3 bits (73), Expect = 0.41
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 413 GIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
G+GV+RL M+ N ++R+ + E+
Sbjct: 338 GLGVERLAMISGNFADVRE--MVYPQFYEH 365
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 31.5 bits (71), Expect = 0.55
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 413 GIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
G+GV+RL M+ N ++R+ + E+
Sbjct: 338 GLGVERLAMISGNFADVRE--MVYPQFYEH 365
Score = 31.1 bits (70), Expect = 0.80
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 20/147 (13%)
Query: 83 LPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPIL- 141
+ + + + K+ K ++ S++ + ++ L
Sbjct: 106 MAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
Query: 142 ------HNKPGGAIAK------PFITHHNSLNMKMFLR----IAPELYLKRLIIGGFN-- 183
K P +++ K+ LR L + L+
Sbjct: 166 LEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPF 225
Query: 184 KIFEINKNFRNEGIS-PRHNPEFTMIE 209
K+F I++ FR E H +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS 252
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 30.7 bits (69), Expect = 0.91
Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 22/144 (15%)
Query: 227 MIKKIIMDCIGTTKIDYQG------RLLD----------FSKSFEKLTIIEAIKKYTPQY 270
MIK ++ D GT D Q R K E + + +Y +
Sbjct: 1 MIKAVVFDAYGTL-FDVQSVADATERAYPGRGEYITQVWRQKQLEYSWLRALMGRYAD-F 58
Query: 271 NEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPT 330
+ + L L + + + + L ++ + +L + + + +
Sbjct: 59 WSVTREA---LAYTLGTLGLEPD-ESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILS 114
Query: 331 EISPLARKSNIENNNITERFELFI 354
+P ++ + N +T+ F+ I
Sbjct: 115 NGAPDMLQALVANAGLTDSFDAVI 138
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 30.7 bits (70), Expect = 0.93
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 403 EYGMP-PASGCGIGVDRLIMLL 423
++ P A+G G+ +D L+ L
Sbjct: 306 KFHRPAQATGFGVRIDLLVEAL 327
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 30.3 bits (69), Expect = 1.4
Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 403 EYGMP-PASGCGIGVDRLIMLL 423
+ A G +D ++ L
Sbjct: 313 NFQEEAFAIGFCCHMDTILKAL 334
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 29.5 bits (67), Expect = 2.2
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 408 PASGCGIGVDRLIMLL 423
PA G +G++RL++L+
Sbjct: 300 PAVGFAMGLERLVLLV 315
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 29.2 bits (66), Expect = 3.0
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 116 KRTQIISSIRHFMEKNDFMEVETPILHNK 144
++ +IR E F +ETP +
Sbjct: 28 LELYLLDTIRRVYESYGFTPIETPAVERL 56
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 28.8 bits (65), Expect = 3.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 408 PASGCGIGVDRLIMLL 423
A G +G++R++ LL
Sbjct: 328 AACGWAMGIERILELL 343
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 28.8 bits (65), Expect = 4.0
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 116 KRTQIISSIRHFMEKNDFMEVETPILHNK 144
R + + F E + P+L ++
Sbjct: 45 CRRHLFDVFHATAKTFGFEEYDAPVLESE 73
Score = 28.0 bits (63), Expect = 6.6
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 403 EYGMP---PASGCGIGVDRLIMLL 423
YG P P +G G G ++ LL
Sbjct: 326 TYGSPTPIPCAGFGFGDCVIVELL 349
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 28.5 bits (64), Expect = 4.4
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 404 YGMP-PASGCGIGVDRLIMLL 423
+G PA G V+R++ +L
Sbjct: 343 FGAGAPAVGFAFEVERVMAVL 363
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 28.7 bits (65), Expect = 4.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 408 PASGCGIGVDRLIMLL 423
P G GV+R+ + L
Sbjct: 301 PGVGFAFGVERVALAL 316
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.9 bits (65), Expect = 4.8
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 207 MIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKL 257
++ YA + + T + + MD I ++DY L D + +
Sbjct: 1009 LVRRYAKFVSE----DRTRDLESR--MDAIERGELDYLKALEDMYAEIKSI 1053
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 28.3 bits (64), Expect = 5.0
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 408 PASGCGIGVDRLIMLL 423
G + ++RL++ L
Sbjct: 302 TGIGFALSIERLLLAL 317
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 28.4 bits (63), Expect = 5.2
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 413 GIGVDRLIMLLTNSKNIRDVILFPHLRNEN 442
G+GV+RL M++ +++R + E
Sbjct: 331 GLGVERLAMIIYGYEDVRA--MVYPQFYEY 358
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 27.9 bits (62), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 413 GIGVDRLIMLLTNSKNIRD 431
G+GV+RL M+L ++R
Sbjct: 327 GLGVERLAMILYGYDDVRK 345
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,845,228
Number of extensions: 427036
Number of successful extensions: 975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 87
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)