RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8863
(442 letters)
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 298 bits (763), Expect = 4e-99
Identities = 182/347 (52%), Positives = 245/347 (70%), Gaps = 7/347 (2%)
Query: 93 QEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKP 152
QE++YR RY+DLI N+ +R+ F R++I+++IR FM FMEVETP++ PGGA A+P
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61
Query: 153 FITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYA 212
FITHHN+L++ M+LRIAPELYLKRL++GGF ++FEIN+NFRNEGIS RHNPEFTM+E Y
Sbjct: 62 FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYM 121
Query: 213 AYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNE 272
AY +Y L++ TE + + + + +GTTK+ Y + DF K FEKLT+ EAIKKY P+ +
Sbjct: 122 AYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDM 181
Query: 273 IDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEI 332
DL N K+ + I + L + +F+E E L PT+IT YP E+
Sbjct: 182 ADLDNFDAAKALAESIGITVEKSWGL-----GRIVTEIFDEVAEAHLIQPTFITEYPAEV 236
Query: 333 SPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSS 392
SPLAR+++ N IT+RFE FI G EI NGFSELND E+Q+ RF+ Q++ K + E +
Sbjct: 237 SPLARRND-VNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDE-AM 294
Query: 393 YYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPHLR 439
+YD DY+ ALEYG+PP +G GIG+DR+IML TNS IRDVILFP +R
Sbjct: 295 FYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMR 341
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 246 bits (629), Expect = 6e-79
Identities = 83/354 (23%), Positives = 152/354 (42%), Gaps = 39/354 (11%)
Query: 83 LPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILH 142
LP ++ +E + ++RY+DL + K R +I S +R FM+ + F+++ETP+L
Sbjct: 2 LPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLT 60
Query: 143 NKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISPRHN 202
+ L +P+L+ + L++ GF++ ++I K FR+E +
Sbjct: 61 KATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ 120
Query: 203 PEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEA 262
PEFT I+ ++ + + E +++ + ++ G D F +T EA
Sbjct: 121 PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGD-----------FPVMTFAEA 169
Query: 263 IKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNP 322
++Y ++ ++K ++ +FE+ E L
Sbjct: 170 ERRYGSDKPDLRDESKW---------------------APLWVIDFPMFEDDGEGGLTAM 208
Query: 323 TYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDL 382
+ P +++ K N + +++ I G E+ G +++ + Q F
Sbjct: 209 HHPFTSPKDMTAAELK-AAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGIL--- 264
Query: 383 KNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
IN E + AL+YG PP +G G+DRL MLLT + NIRDVI FP
Sbjct: 265 --GINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFP 316
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 244 bits (623), Expect = 7e-78
Identities = 74/364 (20%), Positives = 157/364 (43%), Gaps = 42/364 (11%)
Query: 82 PLPNKFQKL----SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVE 137
P+ ++ +++E++ ++RY+DL ++ + R ++I +I F+++ F++VE
Sbjct: 5 PVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVE 63
Query: 138 TPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGI 197
TP L + + + + L +P+L+ + L++ G ++ F+I + FR+E +
Sbjct: 64 TPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL 123
Query: 198 SPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKL 257
P+FT ++ ++ +++ E+++ + + +G + F +L
Sbjct: 124 RADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGV----------ELPLPFPRL 173
Query: 258 TIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTET 317
+ EA+++Y ++ + FL D L EE
Sbjct: 174 SYEEAMERYGSDKPDLRREGFRFLW-------------------VVDFPLLEWDEEEEAW 214
Query: 318 KLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFK 377
+ + + +P ++ ++L + G E+ G ++DP Q+ F+
Sbjct: 215 TYMHHPFTSPHPEDLPL---LEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFR 271
Query: 378 NQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFPH 437
I E ++ ALEYG PP G G+DRL+ L+T S +IR+VI FP
Sbjct: 272 LL-----GIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPK 326
Query: 438 LRNE 441
+
Sbjct: 327 NKEG 330
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 220 bits (562), Expect = 6e-69
Identities = 78/372 (20%), Positives = 138/372 (37%), Gaps = 31/372 (8%)
Query: 75 LITKSLRPLPNKFQK---LSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKN 131
L+ + R + N + + +R IDL N + +F+ + + R ++
Sbjct: 3 LLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTN-QAIFRIQAGVCELFREYLATK 61
Query: 132 DFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKN 191
F EV TP L P + F + K +L +P+ ++LI+ F +++EI
Sbjct: 62 KFTEVHTPKLLGAPSEGGSSVFEVTY--FKGKAYLAQSPQFNKQQLIVADFERVYEIGPV 119
Query: 192 FRNEGISP-RHNPEFTMIEFYAAY-TNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLD 249
FR E + RH EFT ++ A+ +Y ++ ++ I + + +
Sbjct: 120 FRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQ 179
Query: 250 FSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLM 309
+ KL + + T + L+ K+I +
Sbjct: 180 YPVEEFKLPKDGKMVRLTYKEGIEMLRAA---------------GKEIGDFEDLSTENEK 224
Query: 310 LFEETTETKLWNPTYI-TNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELND 368
+ K YI +P EI P + N + ++ F+ G EI +G ++D
Sbjct: 225 FLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHD 284
Query: 369 PEEQSVRFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKN 428
R K + DY YG PP +G GIG++R++M + KN
Sbjct: 285 HALLQERMKAHGLSPED-------PGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKN 337
Query: 429 IRDVILFPHLRN 440
IR LFP
Sbjct: 338 IRRASLFPRDPK 349
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 218 bits (555), Expect = 2e-68
Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 44/342 (12%)
Query: 100 RYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNS 159
RY+ L E R K + ++ R ++++ DF E+ TP + GA + +
Sbjct: 2 RYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVV--RAGAEGGSGLFGVDY 58
Query: 160 LNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRN-EGISPRHNPEFTMIEF-YAAYTNY 217
+ +L +P+LY K++++G F +++E+ +R E + RH E+ ++ +
Sbjct: 59 FEKRAYLAQSPQLY-KQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADE 117
Query: 218 IWLMKFTEKMIKKIIMDCIGTTK---IDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEID 274
LM+ E ++ +++ + + T F + +LT EA +
Sbjct: 118 EDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKR---------- 167
Query: 275 LQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISP 334
LK EL + ++ +L E E + ++T YP + P
Sbjct: 168 -----ILKEELGYPVGQDLSEEAER---------LLGEYAKERWGSDWLFVTRYPRSVRP 213
Query: 335 LARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYY 394
E + T F+L G EI +G ++ EE K + +++
Sbjct: 214 FYT--YPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLK-------AKGMDPEAFH 264
Query: 395 DTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
Y+ +YGMPP G IG +RL L N+R FP
Sbjct: 265 G--YLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 205 bits (522), Expect = 3e-63
Identities = 75/366 (20%), Positives = 144/366 (39%), Gaps = 42/366 (11%)
Query: 82 PLPNKFQKL--SNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKNDFMEVETP 139
PLP + + + +R++DL +FK R+ + ++R F +N F+E+ TP
Sbjct: 1 PLPLDPTGKVKAELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTP 59
Query: 140 ILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKRLIIGGFNKIFEINKNFRNEGISP 199
+ + F + FL +P+LY + ++ G ++++EI FR E +
Sbjct: 60 KIIATATEGGTELFPMKYF--EEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNT 117
Query: 200 RH--NPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSK---SF 254
N +++ A + +M F E+++ I + + + F
Sbjct: 118 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPF 177
Query: 255 EKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEET 314
+++ +A++ DL ++ ++ + K ++ N
Sbjct: 178 PRVSYDKALEILG------DLGKEIPWGEDIDTEGERLLGKYMMEN-------------- 217
Query: 315 TETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSV 374
+ ++ YP+E P I F+L G EI++G + +
Sbjct: 218 ---ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVE 274
Query: 375 RFKNQIDLKNEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNIRDVIL 434
+ K + L+ Y+ A YGMPP G G+G +RLI + + NIR+VIL
Sbjct: 275 QIKEK---------GLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVIL 325
Query: 435 FPHLRN 440
FP R
Sbjct: 326 FPRDRR 331
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 184 bits (469), Expect = 8e-56
Identities = 54/341 (15%), Positives = 107/341 (31%), Gaps = 70/341 (20%)
Query: 105 IINENTRKVFKKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKM 164
II+ +T+I+ + F K F + I+ P +++
Sbjct: 5 IISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEI 64
Query: 165 F-----LRIAPELYLKRLIIGGFNKIFEINKNFRNEGI---SPRHNPEFTMIEFYAAYTN 216
+ L + L+ + I G KIF ++ N R E RH EFT ++F
Sbjct: 65 YGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK 124
Query: 217 YIWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQ 276
+M+ E+++ + ++ GR +K FE E ++++
Sbjct: 125 MEDIMRLIERLVYGLFRKA-----EEWTGREFPKTKRFEVFEYSEVLEEFGSDEKA---- 175
Query: 277 NKLFLKSELKKINPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLA 336
+ I
Sbjct: 176 -------------------------------------------SQEMEEPFWIINIPREF 192
Query: 337 RKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSSYYDT 396
++ L E+A+G + E+ + + ++
Sbjct: 193 YDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFR--------- 243
Query: 397 DYIHALEYG-MPPASGCGIGVDRLIMLLTNSKNIRDVILFP 436
Y+ + G + P++G GIGV+RL+ + +K+I +V FP
Sbjct: 244 PYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 284
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 143
Score = 73.9 bits (181), Expect = 1e-16
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 6/85 (7%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTD-FKNYDIGDIIGAKGTLF 59
M +R+MGK SF+ LQD G+IQLY++ + + + +Y D FK +D+GDIIGA+GTLF
Sbjct: 64 MTRRIMGKASFVTLQD-----VGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLF 118
Query: 60 KTNTGELSIKVSSLKLITKSLRPLP 84
KT TGELSI + L+L+TK+LRPLP
Sbjct: 119 KTQTGELSIHCTELRLLTKALRPLP 143
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 57.9 bits (140), Expect = 2e-11
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
+R +G+I F++L+D +G +Q+ K + +G + +
Sbjct: 23 HWRRDLGRIQFLLLRD-----RSGVVQVVTGG----------LKLPLPESALRVRGLVVE 67
Query: 61 TN--TGELSIKVSSLKLITKSLRPLP 84
G L ++ +++++ +L P P
Sbjct: 68 NAKAPGGLEVQAKEVEVLSPALEPTP 93
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 50.1 bits (119), Expect = 3e-08
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 1 MLKRVMG-KISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDF---KNYDIGDIIGAKG 56
R G ++F+ L+ + IQ + G + ++ I+ +G
Sbjct: 46 HNTRQQGATLAFLTLRQQASL-----IQGLVKANKEGTISKNMVKWAGSLNLESIVLVRG 100
Query: 57 TLFKT-------NTGELSIKVSSLKLITKSLRPL 83
+ K L I ++ + I+++ L
Sbjct: 101 IVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 134
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 47.0 bits (111), Expect = 2e-07
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 1 MLKRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFK 60
+ +G I F+ ++D G +Q+ + + L+ D++ +G +
Sbjct: 26 WEVKDLGGIKFLWIRDRD-----GIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNF 80
Query: 61 TNTGELS--IKVSSLKLITKS 79
T +L I + ++ ++
Sbjct: 81 TPKAKLGFEILPEKIVVLNRA 101
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 34.0 bits (77), Expect = 0.024
Identities = 24/209 (11%), Positives = 49/209 (23%), Gaps = 27/209 (12%)
Query: 121 ISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMF-------LRIAPEL- 172
+ S K F P L F I +
Sbjct: 9 VFSFYSKATKKGFSPFFVPAL-------------EKAEEPAGNFFLDRKGNLFSIREDFT 55
Query: 173 -----YLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKM 227
+ KR K++ + +R G + + + + +
Sbjct: 56 KTVLNHRKRYSPDSQIKVWYADFVYRYSGSDLVAEYQLGLEKVPRNSLDDSLEVLEIIVE 115
Query: 228 IKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKK 287
+ +I + G D K K + E + N +++ +K
Sbjct: 116 SASEFFEGPVIVEIGHTGVYEDLLKEIPK-DLHEKVLNLIDTKNLAEIEFLSHMKKIDLS 174
Query: 288 INPKFNQKKILNNLKKDILQLMLFEETTE 316
K + I + + + L E
Sbjct: 175 RVEKIIEDSIYRRSPEHLKTMDLPLSVRE 203
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 33.1 bits (74), Expect = 0.060
Identities = 41/331 (12%), Positives = 82/331 (24%), Gaps = 52/331 (15%)
Query: 115 KKRTQIISSIRHFMEKNDFMEVETPILHN---------KPGGAIAKPFITHHNSLNMKMF 165
KK I + + M ++ E+ TPI + + K T + + +
Sbjct: 17 KKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSIT 76
Query: 166 LRIAPELYLKRLIIGGFN--------KIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNY 217
LR + R I K++ FR E +F A
Sbjct: 77 LRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAEN 136
Query: 218 IWLMKFTEKMIKKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQN 277
+ M+ I + D + E + + D Q+
Sbjct: 137 PSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQS 196
Query: 278 KLFLKSELKKINPKFNQKKILNNLKKDILQLM-----LFEETTETKLWNPTYITNYPTEI 332
+L K+ + + L +E+ T P +
Sbjct: 197 RLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNLV 256
Query: 333 SPLARKSNIENNNITERFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSS 392
L ++ + + + G G
Sbjct: 257 RGLDYYTHTAFELMMDNPNYDGAITTLCGG-------------------------GR--- 288
Query: 393 YYDTDYIHALEYGMPPASGCGIGVDRLIMLL 423
Y+ + L+ G + ++RL++ L
Sbjct: 289 -YN-GLLELLDGPSETGIGFALSIERLLLAL 317
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 30.6 bits (69), Expect = 0.32
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 65 ELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYID-----LIINENTRKVFK-KRT 118
++ I V L+ K+L+P P K + +N+ +K + R + L++ +T++
Sbjct: 13 DIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSR 72
Query: 119 QIISSIRHFMEKNDFMEVETPILHNKPGGAI 149
QII E F + ++ KP +
Sbjct: 73 QIILEKEETEELKRFDDPGLMLMGFKPLVLL 103
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 30.4 bits (67), Expect = 0.41
Identities = 38/311 (12%), Positives = 79/311 (25%), Gaps = 15/311 (4%)
Query: 115 KKRTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYL 174
K QI +R ++ EV P + N M F++ +
Sbjct: 16 KSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSIT 75
Query: 175 KRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMD 234
R F + + + + + +
Sbjct: 76 LRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSE 135
Query: 235 CIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKINPKFNQ 294
+ L +K+ ++ + ++ + L LKK N
Sbjct: 136 LEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLTELL---LKKDLSGLNA 192
Query: 295 KKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITERFELFI 354
NN K++ L+ T +TN ++ + E + + I
Sbjct: 193 FIEKNNFSKELRGLLKEIFITNELSRLENLVTNTKDDVLISSFDQLKEFSEKLSMIKPII 252
Query: 355 IGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSS--YYDTDYIHALEYGMPPASGC 412
I + D ++ + N + S YD + + A G
Sbjct: 253 IDLGMVPKMDYYTDLMFKAY--------SSAANQPILSGGRYD-QLLSNFQ-EEAFAIGF 302
Query: 413 GIGVDRLIMLL 423
+D ++ L
Sbjct: 303 CCHMDTILKAL 313
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated
protein 36, VPS36 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 47
Score = 27.3 bits (60), Expect = 0.42
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 11/46 (23%)
Query: 384 NEINGELSSYYDTDYIHALEYGMPPASGCGIGVDRLIMLLTNSKNI 429
NE GE + DT P CG+ D L +S N
Sbjct: 13 NETQGEFTK--DTLP-------TPICINCGVPADY--ELTKSSINC 47
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 29.7 bits (65), Expect = 0.61
Identities = 31/317 (9%), Positives = 82/317 (25%), Gaps = 24/317 (7%)
Query: 115 KKRTQIISSIRHFMEKNDFMEVETPI------LHNKPGGAIAKPFITHHNSLNMKMFLRI 168
I + E F ++ P K G + + + + ++
Sbjct: 19 DVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREV---- 74
Query: 169 APELYLKRLIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMI 228
+ ++ + R E Y + + + ++
Sbjct: 75 TLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPE 134
Query: 229 KKIIMDCIGTTKIDYQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKSELKKI 288
+ + ++ +D G + I+E I + + + + +
Sbjct: 135 ADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHK---- 190
Query: 289 NPKFNQKKILNNLKKDILQLMLFEETTETKLWNPTYITNYPTEISPLARKSNIENNNITE 348
+ L + + + + +AR + +E+ +
Sbjct: 191 ISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEEIARMAAVEDLLASY 250
Query: 349 RFELFIIGNEIANGFSELNDPEEQSVRFKNQIDLKNEINGELSS--YYDTDYIHALEYGM 406
+ I G S + F + ++ + YD + +
Sbjct: 251 GVKNVRYDFSIVRGLSYYT-----GIVF--EAYDRSGQFRAILGGGRYD-NLASLMSGES 302
Query: 407 PPASGCGIGVDRLIMLL 423
PA G G+G + +LL
Sbjct: 303 VPAVGFGMGDAVISLLL 319
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 28.5 bits (63), Expect = 0.63
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 4 RVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN- 62
R +G + F+ L+ D G +QL + + G + N
Sbjct: 29 RDLGGLIFLDLR-----DREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNP 83
Query: 63 ---TGELSIKVSSLKLITKS 79
TG + +++S+L+++ ++
Sbjct: 84 RLATGRVEVELSALEVLAEA 103
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 29.3 bits (65), Expect = 0.85
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 413 GIGVDRLIMLLTNSKNIRD 431
G+GV+RL ML +IR
Sbjct: 232 GLGVERLAMLRYGIPDIRY 250
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 29.2 bits (64), Expect = 0.95
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 115 KKRTQIISSIRHFMEKNDFMEVETPIL 141
+ +I+++ R +E +E+ TPI
Sbjct: 17 RMHQRIVATARKVLEAAGALELVTPIF 43
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 28.9 bits (64), Expect = 1.1
Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 16/168 (9%)
Query: 117 RTQIISSIRHFMEKNDFMEVETPILHNKPGGAIAKPFITHHNSLNMKMFLRIAPELYLKR 176
R +I I + V TP+L N + H + +
Sbjct: 33 RREIERYIVDKEVSMGYDHVYTPVLANV-----DLYKTSGHWDHYQEDMFPPMQLDETES 87
Query: 177 LIIGGFNKIFEINKNFRNEGISPRHNPEFTMIEFYAAYTNYIWLMKFTEKMIKKIIMDCI 236
+++ N + + N+ S R P I T + + +
Sbjct: 88 MVLRPMNCPHHMMI-YANKPHSYRELP----IRIAELGTMHRYEASGAVSG----LQRVR 138
Query: 237 GTTKID-YQGRLLDFSKSFEKLTIIEAIKKYTPQYNEIDLQNKLFLKS 283
G T D + D K E ++ I + D +L +
Sbjct: 139 GMTLNDSHIFVRPDQIKE-EFKRVVNMIIDVYKDFGFEDYSFRLSYRD 185
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 28.5 bits (62), Expect = 1.6
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 115 KKRTQIISSIRHFMEKNDFMEVETPIL 141
+I ++++ + + E+ PI+
Sbjct: 17 AIWQRIEGTLKNVLGSYGYSEIRLPIV 43
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 28.1 bits (62), Expect = 2.0
Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 20/147 (13%)
Query: 117 RTQIISSIRHFMEKNDFMEVETPILHNKPGGAIA------KPFITHHNSLNMKMFLRIAP 170
++ +R +++ + EV+ P + ++ K + +S N + ++
Sbjct: 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMN 92
Query: 171 ELYLKRLIIGGFN-------KIFEINKNFRNE----GISPRHNPEFTMIEFYAAYTNYIW 219
++ G ++ E RNE FT + + T
Sbjct: 93 CPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQI 152
Query: 220 LMKFTEKMIKKI--IMDCIGTTKIDYQ 244
+ I+ + + G KI +
Sbjct: 153 RDEV-NGCIRLVYDMYSTFGFEKIVVK 178
>d1vcla3 d.281.1.1 (A:284-432) Hemolytic lectin CEL-III,
C-terminal domain {Cucumaria echinata [TaxId: 40245]}
Length = 149
Score = 27.4 bits (60), Expect = 2.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 16 DTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKL 75
+ G D NGK+ ISN I + T ++ I KG +F T + + S K
Sbjct: 11 NMVGCDQNGKVSQQISNTISFSSTVTAGVAVEVSSTI-EKGVIFAKATVSVKVTASLSKA 69
Query: 76 ITKS 79
T S
Sbjct: 70 WTNS 73
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 56
Score = 25.4 bits (56), Expect = 2.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 76 ITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINEN 109
IT + F+ L+ + +K R Y + II+EN
Sbjct: 15 ITSNDVEAIPTFKTLTEKPLKMRCEYCETIIDEN 48
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 26.6 bits (58), Expect = 2.9
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 3 KRVMGKISFIMLQDTSGPDSNGKIQLYISNEIIGKNLYTDFKNYDIGDIIGAKGTLFKTN 62
+R +G + FI ++D + + + + + I GT+ +
Sbjct: 27 RRDLGSLIFIDMRD-------REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARD 79
Query: 63 ---------TGELSIKVSSLKLITKS 79
TGE+ + SSL +I ++
Sbjct: 80 EKNINRDMATGEIEVLASSLTIINRA 105
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 26.3 bits (57), Expect = 6.6
Identities = 9/91 (9%), Positives = 30/91 (32%)
Query: 36 GKNLYTDFKNYDIGDIIGAKGTLFKTNTGELSIKVSSLKLITKSLRPLPNKFQKLSNQEI 95
GK+ D + + A S++ + F + + E
Sbjct: 98 GKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQ 157
Query: 96 KYRHRYIDLIINENTRKVFKKRTQIISSIRH 126
++ + ++ ++ +++ K ++I +
Sbjct: 158 EFTECFSAIVEGDSFEEIYHKVKRVIEDLSG 188
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857
{Porphyromonas gingivalis [TaxId: 837]}
Length = 111
Score = 25.5 bits (56), Expect = 7.0
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 65 ELSIKVSSLKLITKSLRPLPNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSI 124
E V S+ L T + +P ++L +++I Y + N +F + + +I
Sbjct: 16 EFEKGVRSMVLATLANDDIPYAEERLRSRQIPY---FAQPTPNTERTNLFFGCKECMEAI 72
Query: 125 RHFMEKN 131
R F+
Sbjct: 73 RLFVSGR 79
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.3 bits (57), Expect = 7.0
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 84 PNKFQKLSNQEIKYRHRYIDLIINENTRKVFKKRTQIISSIRHFMEKN 131
K + E+ + Y LI+N++ II + R M +
Sbjct: 144 IAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQ 191
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
[TaxId: 562]}
Length = 327
Score = 26.2 bits (58), Expect = 7.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 406 MPPASGCGIGVDRLIMLLTNSKNIRDVI 433
MP G GIG RL MLL +I V
Sbjct: 284 MPQTIGGGIGQSRLTMLLLQLPHIGQVQ 311
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,707,317
Number of extensions: 86791
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 54
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)