Query psy8864
Match_columns 749
No_of_seqs 335 out of 1643
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:19:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnc_A Ribonucleoside-diphosph 100.0 1E-197 5E-202 1718.2 54.4 713 1-749 68-791 (792)
2 3k8t_A Ribonucleoside-diphosph 100.0 2E-192 6E-197 1680.0 54.7 678 1-706 68-759 (888)
3 2wgh_A Ribonucleoside-diphosph 100.0 2E-181 8E-186 1573.2 53.3 662 8-696 2-672 (676)
4 2xap_A Ribonucleoside-diphosph 100.0 2E-171 6E-176 1508.1 49.4 642 2-699 72-741 (761)
5 3o0q_A Ribonucleoside-diphosph 100.0 2E-163 7E-168 1408.9 44.3 577 66-696 3-634 (644)
6 1peq_A Ribonucleoside-diphosph 100.0 2E-163 7E-168 1429.4 41.3 642 2-696 11-700 (714)
7 1l1l_A Ribonucleoside triphosp 100.0 5E-116 2E-120 1031.6 15.1 513 63-696 12-684 (739)
8 1dq3_A Endonuclease; PI-PFUI, 96.4 1.5E-05 5E-10 89.7 -12.3 67 185-251 1-67 (454)
9 1h7b_A Anaerobic ribonucleotid 94.6 0.37 1.3E-05 55.7 14.9 242 328-685 251-532 (605)
10 1h3o_B Transcription initiatio 32.9 66 0.0023 26.8 5.2 32 461-492 25-56 (76)
No 1
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=100.00 E-value=1.5e-197 Score=1718.22 Aligned_cols=713 Identities=40% Similarity=0.681 Sum_probs=623.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHH--HhhccccccchHHHHh---cHHHHHhhcccccc
Q psy8864 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFI--NKGIDNKLLNPKLAEF---NLSLLSNALLPERD 75 (749)
Q Consensus 1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i--~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rD 75 (749)
+++||||++|||||++++|||++.+.+. ..+.. |..++ .+|+..+++++++.+| |+++|+++|+|+||
T Consensus 68 ~~~~pdy~~~AaRl~~~~l~k~~~~~f~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD 140 (792)
T 3hnc_A 68 TTKHPDYAILAARIAVSNLHKETKKVFS--DVMED-----LYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD 140 (792)
T ss_dssp GGTCTHHHHHHHHHHHHHHHHTSCSCHH--HHHHH-----HHSCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHHCCGGGG
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHhhcccccccChHHHHHHHHHHHHHHHHhChhhh
Confidence 3689999999999999999999986421 11222 33333 4678889999997665 99999999999999
Q ss_pred CCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccc
Q psy8864 76 LQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSS 155 (749)
Q Consensus 76 ~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsS 155 (749)
+.|+|+|+++|++|||+|.+|+++|+||+||||||++|+.. +.+++++||++||+++|+||||||+||||+++||||
T Consensus 141 ~~f~y~g~~~L~~rYllk~~g~~~E~pq~~~~rVA~~l~~~---~~~~a~~~y~~ls~~~f~~aTPtl~NaGt~~~qlsS 217 (792)
T 3hnc_A 141 FSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKE---DIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSS 217 (792)
T ss_dssp GGSCHHHHHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCC
T ss_pred cCCChHHHHHHHhccccccCCCeeeCHHHHHHHHHHHhccc---cHHHHHHHHHHHHcCCcccCChhhhcCCCCCCCCCc
Confidence 99999999999999999999999999999999999999975 357999999999999999999999999999999999
Q ss_pred eeeccC-CCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCC-Ccccce
Q psy8864 156 CYLSTV-PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAI 233 (749)
Q Consensus 156 Cfl~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~ 233 (749)
|||+++ +|||+|||++++++|+++|+|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||+
T Consensus 218 CFl~~v~~Dsl~~I~~~~~~~a~isk~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~R~GA~ 297 (792)
T 3hnc_A 218 CFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAF 297 (792)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEECTTSCCTTCEETTTTEECCCSHHHHHHHHHHHHHCCCC------CE
T ss_pred eeccCCCCccHHHHHHHHHHHHHHHHhCCCceEeeeccCCCCCcccCCCCCCCCchhHHHHHHHHHHHHHhCCCccccce
Confidence 999998 799999999999999999999999999999999999999999999999999999999999999999 699999
Q ss_pred EEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHh
Q psy8864 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQ 313 (749)
Q Consensus 234 ~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~ 313 (749)
|+||++|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|+++||++|+++|++||+.
T Consensus 298 ~vyL~~wHpDI~eFl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~~v~~d~~w~Lf~P~~~p~L~~~yg~ef~~~Y~~~e~~ 377 (792)
T 3hnc_A 298 AIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ 377 (792)
T ss_dssp EEEECTTBTTHHHHTTSCC---------CCEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHT
T ss_pred EEEecCCCccHHHHHHHhhccCcHhHhHhhCchhheeCHHHHHHHHcCCCEEEeCcccCccHHHHhhhHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccch
Q psy8864 314 TKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT 393 (749)
Q Consensus 314 ~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~ 393 (749)
|++ +++|+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+++++.+++++||||||||+
T Consensus 378 ---g~~--~k~v~AreLw~~I~~~~~etG~P~i~f~D~~N~~~~~~~~G~I~~SNlC~EI~~~~~~~e~~vCNLgSiNL~ 452 (792)
T 3hnc_A 378 ---GRV--RKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALN 452 (792)
T ss_dssp ---TCC--SEEEEHHHHHHHHHHHHHHHSCSEEEEHHHHHHTCTTGGGCCCCCCCSSSCCCCCCBTTBCEEECEEEEEGG
T ss_pred ---CCc--eeEeeHHHHHHHHHHHHHHhCCCeeeehhhHHhcCCCCcCCeEEEecCcccccCCCCCCccceeechhccHH
Confidence 543 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc-cCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy8864 394 LHMK-NGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472 (749)
Q Consensus 394 ~~v~-~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~ 472 (749)
+|++ ++.||+++|+++|+++||+||||||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++||
T Consensus 453 ~~v~~~~~fD~~~l~~~v~~avr~Ld~vID~~~yP~~~~~~~~~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~ 532 (792)
T 3hnc_A 453 MYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIF 532 (792)
T ss_dssp GGBCTTSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHhchhhhhHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9997 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceee
Q psy8864 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552 (749)
Q Consensus 473 e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~A 552 (749)
|+|+|+|++||++||+|+|+||.|++|+|++|++|+|.|. ..+...+||++||++|++||+|||+++|
T Consensus 533 e~i~~~A~~aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~------------~~~~~~~dW~~Lr~~i~~~GlRNs~l~A 600 (792)
T 3hnc_A 533 ETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWKVLKEKIAKYGIRNSLLIA 600 (792)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTT------------CCCCTTSCHHHHHHHHHHHCCSCSCCBC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccchhhcc------------CCchhhhhHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999874 2334578999999999999999999999
Q ss_pred ccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhc
Q psy8864 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIY 632 (749)
Q Consensus 553 iaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y 632 (749)
||||||||+|+|+|+||||+|+++|+|++.+|+|.++|++|+++|+++|+|++++++.|...+||||+++.||++++++|
T Consensus 601 iAPTgS~S~i~g~t~gIEP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~i~~lp~~~~~~y 680 (792)
T 3hnc_A 601 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLY 680 (792)
T ss_dssp CCCCHHHHHHHTCCCTTCCCSCSEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTTCTTSCHHHHHHT
T ss_pred cCCcchHHHHcCCCCccCcchhHHHHHHhccCceEeeCHHHHHHHHHcCCCcHHHHHHHHhcCCCcccCcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcE-EEEeCCCcccccccccccccccccc
Q psy8864 633 ATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVN 711 (749)
Q Consensus 633 ~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt-~YY~rs~~~~~~~~~t~~~~~~~~~ 711 (749)
+|||||+|+|||+|+|+||||||||||+|||+++++.++|.++|++||++|||| +||+|++++++++|+|+++..
T Consensus 681 ~tA~eI~~~~~I~m~A~~Q~~IDqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~~~t~~~~~---- 756 (792)
T 3hnc_A 681 KTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEK---- 756 (792)
T ss_dssp CCTTTSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC------------------
T ss_pred hhHHhCCHHHHHHHHHHHcCcchhhccceeecCCCCHHHHHHHHHHHHHhCCCeEEEEecccchhhhhhhccchhh----
Confidence 999999999999999999999999999999999999999999999999999999 899999999999999999653
Q ss_pred cchhcccccC-chhhhhccccccccccccCCCCc-cccCC
Q psy8864 712 LDEISIKGYN-KNLQEIKNNKKCLINSEINDVNE-CESCQ 749 (749)
Q Consensus 712 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-c~~c~ 749 (749)
++........ ........+.+||+ ++|+ ||+||
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~c~~c~ 791 (792)
T 3hnc_A 757 LKDKEKVSKEEEEKERNTAAMVCSL-----ENRDECLMCG 791 (792)
T ss_dssp ----------------------------------------
T ss_pred hcccccccccccccccccccccCCC-----CCcccccccC
Confidence 2211110000 00111234678999 5665 99997
No 2
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=100.00 E-value=1.9e-192 Score=1679.96 Aligned_cols=678 Identities=39% Similarity=0.677 Sum_probs=604.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHH--HhhccccccchHHHHh---cHHHHHhhcccccc
Q psy8864 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFI--NKGIDNKLLNPKLAEF---NLSLLSNALLPERD 75 (749)
Q Consensus 1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i--~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rD 75 (749)
+++||||++|||||++++|||++++.+. ..|. .|.+++ ++|++.+++++++.++ |+++|+++|+|+||
T Consensus 68 ~~~~Pdy~~~AaRl~~~~l~k~~~~~f~------~~~~-~~~~~~~~~~g~~~~li~~~~~~~~~~~~~~L~~~i~~~RD 140 (888)
T 3k8t_A 68 TTVHPDYATLAARIAISNLHKQTTKQFS------KVVE-DLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRD 140 (888)
T ss_dssp ----------------------CCCCHH------HHHH-HHHTCEETTTTEECCSSCHHHHHHHHHTHHHHHTTCCGGGG
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhh------HHHH-HHHHHhhhhhcccccccCHHHHHHHHHHHHHHHHHhChhcc
Confidence 3689999999999999999999986421 1122 233444 5789999999998775 99999999999999
Q ss_pred CCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccc
Q psy8864 76 LQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSS 155 (749)
Q Consensus 76 ~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsS 155 (749)
+.|+|+|+++|++|||+|.+|+++|+||+||||||++||.. +.+++++||++||+++|+||||||+||||+++||||
T Consensus 141 ~~f~y~g~~~L~~rYllk~~g~~~E~pq~~~mRVA~~la~~---~~~~a~~fY~~ms~~~f~paTPtL~NAGt~~~qlsS 217 (888)
T 3k8t_A 141 FQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGR---DIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSS 217 (888)
T ss_dssp GGSCHHHHHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCC
T ss_pred cCCChHHHHHHHhccccccCCCEeeCHHHHHHHHHHHhccc---cHHHHHHHHHHHHcCCcccCChhhhcCCCCCCCCCc
Confidence 99999999999999999999999999999999999999974 467999999999999999999999999999999999
Q ss_pred eeeccC-CCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCC-Ccccce
Q psy8864 156 CYLSTV-PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAI 233 (749)
Q Consensus 156 Cfl~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~ 233 (749)
|||+.+ +|||+|||++++++|+|+|+|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||+
T Consensus 218 CFll~~~~DSl~gI~~~~~~~a~isK~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~Vpfmkv~d~~~~~v~QgG~~RrGA~ 297 (888)
T 3k8t_A 218 CFLVAMKEDSIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAF 297 (888)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHTTCCEEEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHHHCCTTC---CCCE
T ss_pred eeccCCCCccHHHHHHHHHHHHHHHHhCCCccccccccCCCCCcccCCCCCCCCcccHHHHHHHHHHHHHhCCCccccce
Confidence 999986 899999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHh
Q psy8864 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQ 313 (749)
Q Consensus 234 ~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~ 313 (749)
|+||++|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|+++||++|+++|++||+.
T Consensus 298 ~vyL~vwHpDI~eFL~~K~~~g~e~~R~~~l~~sV~IpD~FMe~V~~d~~w~Lf~P~~~p~L~d~yG~eFe~~Y~~ye~~ 377 (888)
T 3k8t_A 298 ALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYTRYEKE 377 (888)
T ss_dssp EEEECTTBTTHHHHTTTTCSSSCSTTCCTTEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHT
T ss_pred eEEecCCCchHHHHHHHhhhcCchhhhhhhCeeeeeeCHHHHHHHhcCCCEEEeccccCccHhhhhchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred hhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccch
Q psy8864 314 TKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT 393 (749)
Q Consensus 314 ~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~ 393 (749)
|+ . ++|+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++++|+++||||||||+
T Consensus 378 ---g~--~-k~V~AreLw~~I~~~~~etG~P~i~f~D~iNr~n~~~~~G~I~~SNlC~EI~~~~~~~e~avCNLgSINL~ 451 (888)
T 3k8t_A 378 ---GR--G-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALP 451 (888)
T ss_dssp ---TC--S-EEEEHHHHHHHHHHHHHHHSCCEEEEHHHHHHTCTTTTTCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGG
T ss_pred ---CC--e-eEEEHHHHHHHHHHHHHHhCCCeEEehhHHHhcCCCccCCeEEEecccccccCCCCCCCceEEecHHhhHH
Confidence 54 3 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc------CCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHH
Q psy8864 394 LHMKN------GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467 (749)
Q Consensus 394 ~~v~~------g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l 467 (749)
+|+++ +.||+++|+++|+++|||||||||+|.||+|+++++|+++|+||||+|||||+|+++||+|+|+||++|
T Consensus 452 ~fv~~~~~~~~~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l 531 (888)
T 3k8t_A 452 AFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531 (888)
T ss_dssp GGBC-----CCCCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHHTCCTTSHHHHHH
T ss_pred HHhccccccccccCCHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHccCCccccHHHHHHHHHHCCCCCCCHHHHHH
Confidence 99974 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcc
Q psy8864 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547 (749)
Q Consensus 468 ~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RN 547 (749)
+++|||+|+|+|++||++||+|+|+||.|++|+|++|+||+|+|.. .+...+||++||++|++||+||
T Consensus 532 ~~~i~e~I~~~A~~AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~------------~p~~~~dW~~Lre~I~k~GlRN 599 (888)
T 3k8t_A 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQ------------KPYGMWDWDTLRKDIMKHGVRN 599 (888)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTC------------CCCCSSCHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccchhhccC------------CchhhccHHHHHHHHHhhCccc
Confidence 9999999999999999999999999999999999999999998742 2234679999999999999999
Q ss_pred cceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChh
Q psy8864 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDD 627 (749)
Q Consensus 548 s~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~ 627 (749)
|+++|||||||||+|+|+|+||||+|+++|.|++.+|+|+++|++|+++|+++|+|++++++.|.+.+||||+++.||++
T Consensus 600 s~llAiAPTgSiS~I~g~s~sIEP~fs~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~ip~lp~~ 679 (888)
T 3k8t_A 600 SLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQE 679 (888)
T ss_dssp SCCBCCCCCTTHHHHHTCCCTTCCCSCSBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTTCCTTCTTSCHH
T ss_pred ccccCCCCchhHHHhcCCCcccCcchhhhHhhhhccCceeeeCHHHHHHHHHcCCCcHHHHHHHHhcCCceecCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcE-EEEeCCCccccccccccccc
Q psy8864 628 LRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMG 706 (749)
Q Consensus 628 ~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt-~YY~rs~~~~~~~~~t~~~~ 706 (749)
++++|+|||||+|+|||+|+|+||||||||||+|||+++++.++|.++|++||++|||| +||+||+++++++|+|+++.
T Consensus 680 ~k~~f~tA~eI~~~~~I~m~A~~Q~~IDQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a~~~~~~t~~~~ 759 (888)
T 3k8t_A 680 LKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQK 759 (888)
T ss_dssp HHHHTCCGGGSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC-------------
T ss_pred HHHHhhhHhhCCHHHHHHHHHHHcCcchhhccceEecCCCCHHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999864
No 3
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-181 Score=1573.22 Aligned_cols=662 Identities=41% Similarity=0.710 Sum_probs=605.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHH--HHhhccccccchHHHHh---cHHHHHhhccccccCCCChhh
Q psy8864 8 SQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKF--INKGIDNKLLNPKLAEF---NLSLLSNALLPERDLQFNYLG 82 (749)
Q Consensus 8 ~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~--i~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rD~~f~y~g 82 (749)
++|||||++++|||++.+.+. ..+.. +.++ .++|+..+++++++.++ ++++|+++|+|+||+.|+|+|
T Consensus 2 ~~~aarl~~~~l~k~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~i~~~rd~~f~~~g 74 (676)
T 2wgh_A 2 AILAARIAVSNLHKETKKVFS--DVMED-----LYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFG 74 (676)
T ss_dssp --CHHHHHHHHHHHTSCSCHH--HHHHH-----HHHCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHTCCGGGGGGSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhh--HHHHH-----HHHHhhhhcccchhhhCHHHHHHHHHHHHHHHHHhCccccCCCCHHH
Confidence 579999999999999987421 11222 2222 24678889999987655 899999999999999999999
Q ss_pred HHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccceeeccC-
Q psy8864 83 LKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTV- 161 (749)
Q Consensus 83 ~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl~~v- 161 (749)
+++|++||++|.+|+++|+||+||||||++||..+ .+++++||++||+++|+||||||+||||+++|||||||++|
T Consensus 75 ~~~l~~~Yllk~~g~~~E~pq~~~~RVA~~la~~~---~~~a~~~y~~ls~~~f~patPtl~naGt~~~qlssCfl~~v~ 151 (676)
T 2wgh_A 75 FKTLERSYLLKINGKVAERPQHMLMRVSVGIHKED---IDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMK 151 (676)
T ss_dssp HHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSEEECHHHHHHTTSSSCCCCCEEEEECC
T ss_pred HHHHHhhcccccCCCccCCHHHHHHHHHHHHcccC---HHHHHHHHHHHHhCCcccCchHHhcCCCCCCCCCCeEeecCC
Confidence 99999999999889999999999999999999754 57899999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCC-CcccceEEeeeCC
Q psy8864 162 PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETW 240 (749)
Q Consensus 162 ~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~~~yl~~w 240 (749)
+|||+||+++++++++++|.|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||+|+||++|
T Consensus 152 ~Dsl~gI~~~~~~~a~i~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~RrGA~~~~l~~~ 231 (676)
T 2wgh_A 152 DDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPW 231 (676)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCEEEEECTTSCCTTCEEGGGTEECCCHHHHHHHHHHHHHHSCSTTSSCCCCEEEEECTT
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceecceeecCCCCcccCCCCCCCCchhHHHHHHHHHHHHHhcCCccCCceeEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCce
Q psy8864 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIK 320 (749)
Q Consensus 241 H~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~ 320 (749)
||||++||++|+++|++++|++++|+||||||+|||||++|++|+||+|+++|+|+|+||++|+++|.+||+. |+
T Consensus 232 HpDI~eFl~~K~~~g~e~~r~~~l~~sv~i~D~Fm~~v~~d~~w~L~~P~~~~~l~~~yg~~f~~~Y~~~~~~---~~-- 306 (676)
T 2wgh_A 232 HLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ---GR-- 306 (676)
T ss_dssp BTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCTHHHHHHHHHHHHT---TC--
T ss_pred ChhHHHHHHhhccccchhhhhhhcchhhccCHHHHHHHHcCCCeEEECcccccchhhhhchHHHHHHHHHHhC---Cc--
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 54
Q ss_pred eeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhc-cC
Q psy8864 321 LFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NG 399 (749)
Q Consensus 321 ~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~-~g 399 (749)
++++|+||+||++|++++++||+|||+|+|+||++||++|.|+|++||||+||+|+++++|+++|||+||||++|++ +|
T Consensus 307 ~~k~v~Ar~L~~~I~~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~SNpC~EI~~~~~~~e~~~CNL~SiNL~~~v~~~~ 386 (676)
T 2wgh_A 307 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEH 386 (676)
T ss_dssp CSEEEEHHHHHHHHHHHHHHHSCCEEEEHHHHHHTCTTGGGCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGGGGBCTTS
T ss_pred ceeEeeHHHHHHHHHHHHHHHCCCeEEechhhhhcCCCCCCCcEEeccccccccccCCCCceeEEecccccHHHHhcccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999995 77
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8864 400 KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479 (749)
Q Consensus 400 ~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A 479 (749)
.||+++|+++|+++||+||||||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|
T Consensus 387 ~~D~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A 466 (676)
T 2wgh_A 387 TYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGA 466 (676)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCCCceecHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccc
Q psy8864 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATI 559 (749)
Q Consensus 480 ~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~ 559 (749)
++||++||+|+|+||.|++|+|++|++|+|.|+ +.++..+||++||++|++||+|||+++||||||||
T Consensus 467 ~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~------------~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiaPTgTi 534 (676)
T 2wgh_A 467 LEASCDLAKEQGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTAST 534 (676)
T ss_dssp HHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTT------------CCCCSSSCHHHHHHHHHHHCCSCSCCBCCCCCTTH
T ss_pred HHHHHHHHHHhCCCcccccChhhccCcchhhhh------------cCCCchhhHHHHHHHHHHhCCccceeeeccCCcce
Confidence 999999999999999999999999999999874 22334689999999999999999999999999999
Q ss_pred cccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCC
Q psy8864 560 SNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEIS 639 (749)
Q Consensus 560 S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~ 639 (749)
|+|+|+|+||||+|+++|+|++.+|+|+++|++|+++|+++|+|+++++++|...+||||+++.+|++++++|+|||||+
T Consensus 535 S~i~g~s~gIeP~~s~~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~~p~lp~~~~~~f~tA~ei~ 614 (676)
T 2wgh_A 535 AQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEIS 614 (676)
T ss_dssp HHHHTCCCTTCCCCCSBC---------CCBCHHHHHHHHHHTC-------------CCCTTCSSSCHHHHHHTCCTTSSC
T ss_pred eeecCCCCccCcccchheeEecccCceeecCHHHHHHHHHcCCChHHHHHHHHhcCCcEecCCCCCHHHHHHhCCHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcE-EEEeCCCccc
Q psy8864 640 PNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696 (749)
Q Consensus 640 ~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt-~YY~rs~~~~ 696 (749)
|+++|+|+|++|||||||||+|||+++++.++|.++|++||++|||| +||||++.-.
T Consensus 615 ~~~~i~~~a~~Q~~iDqsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~~~ 672 (676)
T 2wgh_A 615 QKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672 (676)
T ss_dssp HHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC---
T ss_pred HHHHHHHHHHhCCCCccccceEEecCCCCHHHHHHHHHHHHHhCCCEEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999 6999998753
No 4
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=100.00 E-value=1.8e-171 Score=1508.11 Aligned_cols=642 Identities=29% Similarity=0.459 Sum_probs=594.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH-h---cHHHHHhhccccccCC
Q psy8864 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-F---NLSLLSNALLPERDLQ 77 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~l~~~i~~~rD~~ 77 (749)
++||||++|||||++++|||++.+++.. ..|.++++.+++.++|++++.+ | ++++|+++|+|+||+.
T Consensus 72 ~~~p~~~~~Aarl~~~~l~k~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~ 142 (761)
T 2xap_A 72 RDAPDYQYLAARLAIFHLRKKAYGQFEP---------PALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMT 142 (761)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHSSSSC---------CCHHHHHHHHHHTTSSCTHHHHHSCHHHHHHHHHHCCGGGGGG
T ss_pred ccCcCHHHHHHHHHHHHHHHHHhcccCh---------HHHHHHHHHHHhcchhhHHHHhhccHHHHHHHHhhhcccccCC
Confidence 6899999999999999999999985421 2477888899999999998875 5 8999999999999999
Q ss_pred CChhhHHHHHHhccccc--CCeEeecHHHHHHHHHhHhhccc--cCcHHHHHHHHHHHhcCCccccCccccccCcccccc
Q psy8864 78 FNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMGLSLNE--SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQL 153 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~--~~~~~E~pq~~~mRVA~~la~~e--~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~ql 153 (749)
|+|+|+++|++||++|+ +|+++|+||++|||||++||..+ .++.+++++||++|++++|+||||||+|+||+++||
T Consensus 143 ~~~~g~~~l~~rYllk~~~~g~~~E~pq~~~~RVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~patPtl~naGt~~~ql 222 (761)
T 2xap_A 143 FSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQF 222 (761)
T ss_dssp CCHHHHHHHHHHTSCBCTTTCCBCCCHHHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHHTTSEECCHHHHHHTTSSCCCC
T ss_pred CCHHHHHHHHhccCCccCCCCceecCHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHcCCcCCCchhhhcCCCCCCCc
Confidence 99999999999999995 68899999999999999999877 356789999999999999999999999999999999
Q ss_pred cceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccce
Q psy8864 154 SSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233 (749)
Q Consensus 154 sSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~ 233 (749)
|||||++|+|||+||++++++++++++.|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+|||+||||.
T Consensus 223 ssCFl~~v~Dsle~I~~~~~~~~~~~s~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~RrGA~ 302 (761)
T 2xap_A 223 SSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAA 302 (761)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCC------CCSCHHHHHHHHHHHHTTTSTTSSSSCEE
T ss_pred ceEEEecCCCCHHHHHHHHHHHHHHHhhCCccceeeeecCCCCCcCCCCCCcCCCcHHHHHHHHHHHHHHHccCCcCCce
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhh---chHHHHHHHHH
Q psy8864 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF---GKEFEESYILY 310 (749)
Q Consensus 234 ~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~y---g~~Fe~~Y~~y 310 (749)
|+||++|||||++||++|+++|+|++|++++|+||||||+|||||++|++|+||+|+++|+|++.| |++|+++|.+|
T Consensus 303 ~vyL~~~HpDI~eFl~~K~~~g~e~~r~~~l~~~v~i~D~Fm~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~~f~~~Y~~~ 382 (761)
T 2xap_A 303 TLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKY 382 (761)
T ss_dssp EEEEETTBTTHHHHHTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHHTCEEEEBCGGGSTTHHHHHHHCHHHHHHHHHHH
T ss_pred eEEecCCCchHHHHHHHhcccCcchhhhhhcccccccCHHHHHHHHcCCCeEEECcccccchhhccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCC-CccceEeeeccccccccCCCC--------Cc
Q psy8864 311 ENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ-QHVGIIHSSNLCTEITLNTSK--------NE 381 (749)
Q Consensus 311 e~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~-~~~g~I~~SNlC~EI~l~~~~--------~e 381 (749)
|+. |.+ .+++|+||+||++|++++++||+|||+|+|+||+++|+ ++.|+|++||||+||+|++++ +|
T Consensus 383 ~~~---~~i-~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~ge 458 (761)
T 2xap_A 383 EKD---DSI-RKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGE 458 (761)
T ss_dssp HHC---TTS-CCEEEEHHHHHHHHHHHHHHHSCEEEEETTHHHHSSSBCTTTSCBCCCCTTSCCCCBCBCCSSTTCTTCB
T ss_pred HhC---CCc-eeEEeeHHHHHHHHHHHHHHhCCceEEecHHHHhcCCcccccCeEEeecccccccccCCcccccccccCc
Confidence 874 554 37999999999999999999999999999999999998 578999999999999999764 78
Q ss_pred ccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCC
Q psy8864 382 IGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461 (749)
Q Consensus 382 ~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S 461 (749)
+++||||||||++|+ |+++|+++|++||||||||||++.||+|+++++|+++|+||||+|||||+|+++|++|+|
T Consensus 459 ~~~CNL~SiNL~~~~-----d~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S 533 (761)
T 2xap_A 459 IALCTLSAFNLGAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSD 533 (761)
T ss_dssp CEECEEEEEETTTCS-----SGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEEEEEECHHHHHHHTTCCSTT
T ss_pred eeecccceeeHHHhc-----CHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHhcCccccCcccHHHHHHHcCCCCCC
Confidence 999999999999985 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHH
Q psy8864 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIK 541 (749)
Q Consensus 462 ~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~ 541 (749)
+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|++|+|.|+...++ .++.+..+||++||++|+
T Consensus 534 ~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~~~------~~~~~~~~dW~~Lr~~i~ 607 (761)
T 2xap_A 534 GSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT------IANEPLHYDWEALRESIK 607 (761)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGGGG------TCCCCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCcchhhhhhhhhh------hcCcchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988653211 123445689999999999
Q ss_pred HhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccc
Q psy8864 542 KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQI 621 (749)
Q Consensus 542 ~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i 621 (749)
+||+|||+++|||||||||+|+|+|+||||+|+++|+|++..|.+.+++|.+.
T Consensus 608 ~~G~RNs~l~aiAPTgTiS~i~g~s~gIeP~~~~~~~r~~~~G~~~~~~p~~~--------------------------- 660 (761)
T 2xap_A 608 THGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYE--------------------------- 660 (761)
T ss_dssp HHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSSSEEEECCTTSCEEEECTTHH---------------------------
T ss_pred HhCcccceeeecCCCcceeeecCCCCeecccccceeeEecccCceeeeCCCHH---------------------------
Confidence 99999999999999999999999999999999999999999999988888641
Q ss_pred cCCChhHHhhcccccCCC-HHHHHHHHHHHcccccccCcceeeeCC-------CCHHHHHHHHHHHHHcCCcEEEEeCCC
Q psy8864 622 SRIPDDLRKIYATAFEIS-PNWIIEAGSVRQKWIDQSQSLNIYISN-------KSGKKLDETYKLAWLRGLKTTYYLRSI 693 (749)
Q Consensus 622 ~~ip~~~k~~y~tA~ei~-~~~~i~~~a~~Q~~iDqs~S~nl~~~~-------~~~~~l~~~~~~Awk~GlKt~YY~rs~ 693 (749)
+++.+|+|||||+ |++||+|+|++|||||||||+|||+++ ++.++|.++|++||++||||+||+|++
T Consensus 661 -----~l~~~y~ta~ei~~~~~~i~m~A~~Q~~iDqsiS~tl~~~~~~~~~~~~t~~dl~~~y~~Awk~GlKT~Yy~rsr 735 (761)
T 2xap_A 661 -----HLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYXQNTR 735 (761)
T ss_dssp -----HHTTTCCCGGGCSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCEEHHHHHHHHHHHHHTTCCEECCEEEC
T ss_pred -----HHHHHHhHHHcccCHHHHHHHHHHHcCcccccccceEEECCcccccCCCCHHHHHHHHHHHHHcCCCEECCCCCc
Confidence 3567899999999 999999999999999999999999974 468999999999999999999999999
Q ss_pred cccccc
Q psy8864 694 SANYAK 699 (749)
Q Consensus 694 ~~~~~~ 699 (749)
+++...
T Consensus 736 ~~~~~~ 741 (761)
T 2xap_A 736 DGAEDA 741 (761)
T ss_dssp CC----
T ss_pred chhhhc
Confidence 887553
No 5
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=100.00 E-value=2e-163 Score=1408.94 Aligned_cols=577 Identities=31% Similarity=0.450 Sum_probs=537.9
Q ss_pred HHhhccccccCCCChhhHHHHHHhccccc-CCeEee-cHHHHHHHHHhHhhccccC------------cHHHHHHHHHHH
Q psy8864 66 LSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIE-MPQFFFMRIAMGLSLNESN------------REKCAIKFYNLL 131 (749)
Q Consensus 66 l~~~i~~~rD~~f~y~g~~~l~~rYllk~-~~~~~E-~pq~~~mRVA~~la~~e~~------------~~~~a~~fY~~l 131 (749)
+..+|+|.||..|+|+|+++|.+|||+|. +|+++| +||+||||||++||..|.+ +.+++++||++|
T Consensus 3 ~~~~~~~~~d~~~s~~a~~~l~~rYllk~~~g~~~E~spq~~~~RVA~~la~~e~~~~~~~~~~~~~~~~~~~~~fy~~l 82 (644)
T 3o0q_A 3 LSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRVL 82 (644)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTSCBCTTSCBSCCSHHHHHHHHHHHHHGGGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCCCCCCHHHHHHHHHhhCccCCCCCCccCCHHHHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Confidence 35679999999999999999999999996 889999 9999999999999988743 467899999999
Q ss_pred hcCCccccCccccccCc---------c------------------cccccceeeccCCCChhhHHHHHHHHHHHHhhcCC
Q psy8864 132 SSFNFMCSTPTLFNSGT---------I------------------RSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGG 184 (749)
Q Consensus 132 s~~~~~~atPtl~naGt---------~------------------~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGG 184 (749)
++++|+||||||+|||| + ++|||||||++|+|||+||+++++++|+++|.|||
T Consensus 83 s~~~f~patPtl~NaGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qlssCFl~~v~Dsl~~I~~~~~~~a~i~k~GGG 162 (644)
T 3o0q_A 83 KARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGG 162 (644)
T ss_dssp HTTSEEECHHHHHHTTTTSCHHHHSSCGGGCCHHHHHHHHHHCCTTCCCCCEEECCCCSSHHHHHHHHHHHHHHHHTTCE
T ss_pred HhCCEecCChHhhcCCCCcccccccCChhhccccchhhhccccccCCCccceEecCCCCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999 8 99999999999999999999999999999999999
Q ss_pred cccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhh-cCcccccccc
Q psy8864 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKN-TGDDRRRTHD 263 (749)
Q Consensus 185 iG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~-~g~~~~r~~~ 263 (749)
||+|||+|||+|++|+|++|+|||||||||+||+++.+|+|||+||||.|+||++|||||++||++|++ +|+ .|.++
T Consensus 163 iG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~RrGA~~~yL~~~HpDI~eFl~~K~~n~g~--~~~~~ 240 (644)
T 3o0q_A 163 VGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVVKQGSRRRGALMGILNINHPDIEEFIDAKKENTGE--AVLNF 240 (644)
T ss_dssp EEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHTTCEETTTEECCEEEEEETTSTTHHHHHTCC---------CCTT
T ss_pred ceeeccccCCCCCcccccCCccCCcccHHHHHHHHHHHHHcCCccccceEEEecCCCcCHHHHHHHhccccCc--cceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 665 35677
Q ss_pred cccccccC---HHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHh
Q psy8864 264 MNIAIWVP---DLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFE 340 (749)
Q Consensus 264 ~~~sv~ip---D~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~e 340 (749)
+|++|+|| |+|||||++|++|+||+|+ |+ ++++|+||+||++|++++|+
T Consensus 241 ~n~sv~i~~~pD~Fm~~v~~d~~w~L~~P~--------------------------g~--~~~~v~Ar~L~~~I~~~~~e 292 (644)
T 3o0q_A 241 FNLSVGFPMDKKEILKLYEEDGELELSHPR--------------------------ST--IRKKVKIRELFRKIATNAWK 292 (644)
T ss_dssp EEEEEECCSCHHHHHHHHHTTCEEEECCTT--------------------------CC--CCEEEEHHHHHHHHHHHHHH
T ss_pred cceeEEeCCCHHHHHHHHHcCCCeEeECCC--------------------------Cc--eeeeecHHHHHHHHHHHHHH
Confidence 88888888 9999999999999999992 33 37999999999999999999
Q ss_pred cCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHH
Q psy8864 341 TGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420 (749)
Q Consensus 341 tG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~v 420 (749)
||+|||+|+|+||++||++|.|+|++||||+||+|+++. +||||||||++|+++|.|||++|+++|+++|||||||
T Consensus 293 tG~Pgi~f~D~~N~~~~~~~~g~I~~SNlC~Ei~l~~~~----~CNLgSiNL~~~v~~~~fD~~~l~~~v~~avr~LD~V 368 (644)
T 3o0q_A 293 SGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLSDYE----ACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNV 368 (644)
T ss_dssp HSCCEEECHHHHHHTCTTTTTSCEEEECTTSCCEEETTC----EEEEEEEEGGGGEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred HCCCeEEEhhhHHhcCCCccCCceeeccCccccccCCCC----ceEhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874 8999999999999988999999999999999999999
Q ss_pred hhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Q psy8864 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSL 500 (749)
Q Consensus 421 Id~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~ 500 (749)
||++.||+|+++++|+++|+||||+|||||+|+++||||+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+
T Consensus 369 Id~~~~P~~~~~~~~~~~R~IGLGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~ 448 (644)
T 3o0q_A 369 IDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISR 448 (644)
T ss_dssp HHHCCCSSHHHHHHHHHHCCEEEEEECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGSH
T ss_pred HhcccCcHHHHHHHHhhcCccccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--CCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHH--HhCCcccceeeccCCccccccccccccccccccch
Q psy8864 501 WD--QGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIK--KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576 (749)
Q Consensus 501 ~~--~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~--~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~ 576 (749)
|+ +|.+|++.+ ...+|++||++|+ +||+|||+++|||||||||+|+|||+||||+|+++
T Consensus 449 ~~~~~g~~~~~~~-----------------~~~~W~~Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP~~s~~ 511 (644)
T 3o0q_A 449 YRTEDNFVPFAMG-----------------MSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLA 511 (644)
T ss_dssp HHHSSSCCSSCCC-----------------SCTTHHHHHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCCCSCSE
T ss_pred hhccCCccccccc-----------------ccccHHHHHHHHHhcccCceehheeccCCCcchhhhcCCCCcccccccce
Confidence 94 677876532 2468999999999 99999999999999999999999999999999999
Q ss_pred hheecC--CCc---ceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHc
Q psy8864 577 HIKSNL--SGE---FTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651 (749)
Q Consensus 577 y~r~~~--~G~---f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q 651 (749)
|+|+++ +|+ |.+|||+|+++|+++ |++++++.|.. +||||+++.||++++.+|+|||||+|++||+|||++|
T Consensus 512 y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~~~i~~-~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m~A~~Q 588 (644)
T 3o0q_A 512 YTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIEKELIE-KGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQ 588 (644)
T ss_dssp EEEC---------CEEEECHHHHHHSCHH--HHHHHHHHHHH-HSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHHHHHHH
T ss_pred EEEEeeccCCCccceeeeCHHHHHHHHHh--ccHHHHHHHHh-cCCccccccCCHHHHhHcccHHhCCHHHHHHHHHHHC
Confidence 999988 777 999999999999988 88888888874 7999999999999999999999999999999999999
Q ss_pred ccccccCcceeeeC-CCCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Q psy8864 652 KWIDQSQSLNIYIS-NKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 652 ~~iDqs~S~nl~~~-~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~ 696 (749)
||||||||+|||++ +++.++|.++|++||++||||+||+|.-+..
T Consensus 589 ~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~t~YR~gs~~ 634 (644)
T 3o0q_A 589 RYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQ 634 (644)
T ss_dssp TTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEEEEEETTCC-
T ss_pred ccccccccceeecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCcc
Confidence 99999999999997 5899999999999999999998888866543
No 6
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=100.00 E-value=2.1e-163 Score=1429.39 Aligned_cols=642 Identities=26% Similarity=0.441 Sum_probs=558.1
Q ss_pred CCCCchHHHHHHHHHHHH--HHHHcCCCcccchhhhhHH---------HhHHHHHHhhccccccchHHHH-hcHHHHHhh
Q psy8864 2 EKDPVYSQVTARLLMYCI--QKEVFGKEIKQIDIPIKYK---------EYFSKFINKGIDNKLLNPKLAE-FNLSLLSNA 69 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l--~k~~~~~~~~~~~~~~~y~---------~~~~~~i~~~~~~~~~~~~~~~-~~~~~l~~~ 69 (749)
.++|||..+||||.+.++ ++++...+ .......|. ..|.+.++.+++.|+|++++.+ |+.++|+++
T Consensus 11 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~~y~~~~l~~~ 88 (714)
T 1peq_A 11 QETMDYHALNAMLNLYDKAGHIQFDKDQ--QAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRL 88 (714)
T ss_dssp CCCCCHHHHHHGGGCCCTTSCCCTHHHH--HHHHHHHHHTHHHHBCCCSCHHHHHHHHHHTTSBCHHHHTTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHcccccCCcccccchH--HHHHHHHHHhhhhhccCCCCHHHHHHHHHhcCcccHHHHHhcCHHHHHHH
Confidence 346999999999998873 22221100 000111111 1366778889999999999865 777777776
Q ss_pred ccc--cccCCC-ChhhHHHHHHhccccc-CCe-EeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCcccc
Q psy8864 70 LLP--ERDLQF-NYLGLKILYDRYFLHI-EGI-RIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLF 144 (749)
Q Consensus 70 i~~--~rD~~f-~y~g~~~l~~rYllk~-~~~-~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~ 144 (749)
+++ +||+.| +|+|+++|++||++|. +|+ ++|+||++|||||++|+..+ .+++++||++|++++|+||||||+
T Consensus 89 ~~~~~~~~~~f~~y~g~~~l~~~Y~lk~~~g~~~~E~~~~~~~rvA~~la~~~---~~~a~~~y~~ls~~~f~patPtl~ 165 (714)
T 1peq_A 89 FEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFL 165 (714)
T ss_dssp HHHHHHSCCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSEEECHHHHH
T ss_pred HhhhhhcCCCCCchHHHHHHHHHcccccCCCCEEeCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCcccCChhhh
Confidence 654 455666 8999999999999997 554 68999999999999999753 578999999999999999999999
Q ss_pred ccCcc-cccccceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHh
Q psy8864 145 NSGTI-RSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAV 223 (749)
Q Consensus 145 naGt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v 223 (749)
|+||+ ++|||||||++|+|||+||+++++++++++|.|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|
T Consensus 166 NaGt~~~~qlssCFl~~v~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v 245 (714)
T 1peq_A 166 NCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYA 245 (714)
T ss_dssp HTTBSSCCCSCCCEEECCCSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCCBTTBSSCCCCSHHHHHHHHHHHHHC
T ss_pred cCCCCCCCCccceecCCCCCCHHHHHHHHHHHHHHHhcCCCceEeeccccCCCCcccCCCCCCCChhHHHHHHHHHHHHH
Confidence 99997 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHH
Q psy8864 224 NQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303 (749)
Q Consensus 224 ~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~F 303 (749)
+|||+||||.|+||++|||||++||++|+++|+++.|++++|+||||||+|||||++|++|+||+|+++ .++||++|
T Consensus 246 ~QgG~RrGA~~vyL~~~HpDI~eFl~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~~G~~~ 322 (714)
T 1peq_A 246 NQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDI---QRRYGKPF 322 (714)
T ss_dssp ------CCEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEEECHHHH---HHHHSSCG
T ss_pred hccCccCCceeEEecCCCchHHHHHHHcccccchhhhhhhhhhhhccCHHHHHHHHcCCCeeeeCCccc---hhhcCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 57899887
Q ss_pred HHH--HHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCc
Q psy8864 304 EES--YILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNE 381 (749)
Q Consensus 304 e~~--Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e 381 (749)
++. +++|++.+.+++++ +++|+||+||++|++++|+||+|||+|+|+||++||++ |+|++||||+||+|++++++
T Consensus 323 ~~~~~~~~Y~~~~~~~~i~-~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~--g~I~~SNlC~EI~~~~~p~~ 399 (714)
T 1peq_A 323 GDIAISERYDELIADPHVR-KTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASR 399 (714)
T ss_dssp GGSCHHHHHHHHHHCTTSC-EEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCSS--SCCCCCCTTSCCCCCCCCCE
T ss_pred cccchHHHHHHHHhCCCee-eEEeeHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCC--CeeeecCcccceeccCCccc
Confidence 653 55666666667764 79999999999999999999999999999999999998 99999999999999986643
Q ss_pred ------------ccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCC-cHHHHHHHhhhcCCcccccchH
Q psy8864 382 ------------IGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKYSNLRHRPVGLGIMGF 448 (749)
Q Consensus 382 ------------~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~y-p~~~~~~~n~~~R~IGlGv~Gl 448 (749)
.++||||||||++|++ +++|+++|++|||+||||||++.| |+|+++++|+++|+||||+|||
T Consensus 400 ~~~~~~~~~~G~~~~CNL~SiNL~~~v~-----~~~l~~~v~~avr~Ld~Vid~~~~~~~p~~~~~~~~~R~IGlGv~Gl 474 (714)
T 1peq_A 400 YDDNLDYTHIGHDISCNLGSLNIAHVMD-----SPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNL 474 (714)
T ss_dssp ECTTSCEEECCCCEECEEEEEEHHHHHT-----CSCHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHCCEEEEEECH
T ss_pred ccccccccccCCcCcccchhhhHHHhcC-----HHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHhcCCeEEeHHHH
Confidence 3899999999999984 578999999999999999999765 7999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcccCCCCchhhH------------HHHH
Q psy8864 449 QDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG-RYSSYDGSLWDQGILPQDSL------------KLLE 515 (749)
Q Consensus 449 ad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G-~~~~f~~S~~~~G~lp~d~~------------~~~~ 515 (749)
||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+| +||.|++|+|++|++ +|.| +.+.
T Consensus 475 ad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~~~~~~~~~p~~~~v~~l~ 553 (714)
T 1peq_A 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FTQYLQDDWQPKTAKVRALF 553 (714)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HHHHHSSCCSCSSHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccChhhccch-hhhccccccCcccHHHHHHh
Confidence 9999999999999999999999999999999999999999999 999999999999986 4432 2333
Q ss_pred HHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCC-CcceeecHHHH
Q psy8864 516 KERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS-GEFTEINRYLV 594 (749)
Q Consensus 516 ~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~-G~f~~vn~~l~ 594 (749)
+.++ +..+..+||++||++|++||+|||+++|||||||||+|+|||+||||+|+++|+|++.. |+|.++||+
T Consensus 554 ~~~~-----~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s~~~~r~~~~~g~~~~~~p~-- 626 (714)
T 1peq_A 554 ARSG-----ITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPF-- 626 (714)
T ss_dssp HHHT-----CCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCSTTSCEEEECTT--
T ss_pred hhcC-----CCCcchhhHHHHHHHHHHhCCchhheeeecCCCcchhhcCCCCcccccccceeEEecccCCcEEEeCCc--
Confidence 3332 22345789999999999999999999999999999999999999999999999999988 999888875
Q ss_pred HHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHH
Q psy8864 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLD 673 (749)
Q Consensus 595 ~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~ 673 (749)
+|++++.+|+|||||+|++||+|+|++|||||||||+|||+++ .+.++|.
T Consensus 627 -----------------------------l~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~iDqsiS~tl~~~~~~t~~dl~ 677 (714)
T 1peq_A 627 -----------------------------MTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677 (714)
T ss_dssp -----------------------------CCTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCCEEECTTCCHHHHH
T ss_pred -----------------------------cchhhHhhhCcHhhCCHHHHHHHHHHHcCcccccccceEEeCCCCCHHHHH
Confidence 3556788999999999999999999999999999999999986 5999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCccc
Q psy8864 674 ETYKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 674 ~~~~~Awk~GlKt~YY~rs~~~~ 696 (749)
++|++||++||||+||+||++.+
T Consensus 678 ~~y~~Awk~GlKtiYY~rs~~~~ 700 (714)
T 1peq_A 678 KAQIYAWRKGIKSLYYIRLRQLA 700 (714)
T ss_dssp HHHHHHHHHTCCEECCEEECCC-
T ss_pred HHHHHHHHhCCCEEEEccccccc
Confidence 99999999999999999998664
No 7
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=100.00 E-value=5.4e-116 Score=1031.56 Aligned_cols=513 Identities=20% Similarity=0.237 Sum_probs=436.4
Q ss_pred HHHHHhhccccccCCCChhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc------------CcHHHHHHHHH
Q psy8864 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES------------NREKCAIKFYN 129 (749)
Q Consensus 63 ~~~l~~~i~~~rD~~f~y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~------------~~~~~a~~fY~ 129 (749)
+++++..|.+.+|. +|..+++++|+++. +|+++|+||++|||||++++..+. ++.+++++||+
T Consensus 12 ~~~~~~~~~p~~~~----~g~~~~~r~Y~~~~~~g~~~E~~~e~~~RVa~g~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 87 (739)
T 1l1l_A 12 IDRVKASVKPHWGK----LGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLYK 87 (739)
T ss_dssp HHHHHHHCCCCCCT----THHHHHHTTTCCEETTTTEECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcCCCCcCh----hHHHHHHhhcccCCCCCCeecCHHHHHHHHHHHHHhhhhhcccccccccchhhHHHHHHHHH
Confidence 57888889998775 79999999999986 788889999999999998776542 23579999999
Q ss_pred HHhcCCccccCccccccCccc-----ccccceeeccCC-----CC-----------------------------------
Q psy8864 130 LLSSFNFMCSTPTLFNSGTIR-----SQLSSCYLSTVP-----DD----------------------------------- 164 (749)
Q Consensus 130 ~ls~~~~~~atPtl~naGt~~-----~qlsSCfl~~v~-----Ds----------------------------------- 164 (749)
+|++++|+||||||+|+||++ +||+|||++.|+ ||
T Consensus 88 ~m~~~~~~pa~ptL~naGt~~~~~~~~~l~sCf~~~v~~~~~~Ds~~~~~~l~~~~~~~~~~f~~i~~~~~~GgGvG~~~ 167 (739)
T 1l1l_A 88 LIYGLGATPSGRNLWISGTDYQRRTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGFSV 167 (739)
T ss_dssp HHHTTSEEECHHHHHHTTSHHHHTSTTTTCCEEEEECSCEECCSCSCCCTTSCSSCEETTHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHhCCeeccChHHhhcCCCccccCCCceeeeEEeeccccccccccccccccccccccccccHHHHHHHHhcCCCCceec
Confidence 999999999999999999984 389999997665 44
Q ss_pred --------------------------------------------------------hhhHHHHHHHHHHHHhh-------
Q psy8864 165 --------------------------------------------------------LYGIFESIKENALLSKY------- 181 (749)
Q Consensus 165 --------------------------------------------------------l~~I~~~~~~~a~lsk~------- 181 (749)
++||++++. +++++.
T Consensus 168 ~~~~i~~lp~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DS~eGi~~~~~--ali~~~~~~~~~~ 245 (739)
T 1l1l_A 168 ARSNISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADSIYYRLPDTREGWVLANA--LLIDLHFAQTNPD 245 (739)
T ss_dssp CHHHHTTSCCCCCCCEEEEECCTTSTTHHHHHHTTCBCTTTCCCCTTCEEEECCSSHHHHHHHHH--HHHHTTSGGGCTT
T ss_pred cccccccCCccccccceeeeeccccccccccccccccchhhhcccccceeeecCCchhHHHHHHH--HHHHHhhcccccc
Confidence 444444444 666665
Q ss_pred -cCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHH------------------------HHHhhcCCCcccceEEe
Q psy8864 182 -AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDV------------------------AVAVNQGGKRKGAICAY 236 (749)
Q Consensus 182 -gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~------------------------~~~v~QgG~RrGA~~~y 236 (749)
+||||+|||+|||+|++|+|++|+|||||||||+||++ +++|+|||+||||.|+|
T Consensus 246 ~~gGiG~~~S~IRp~Gs~Ikg~~G~ssG~vpf~k~~~~~~~i~~~~~g~~l~~~d~~di~~~i~~~V~QGG~RrGA~m~~ 325 (739)
T 1l1l_A 246 RKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGNVRRSAELAL 325 (739)
T ss_dssp CCCEEEEECTTSCCTTCBCTTSSSBCCCSHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHTTC----CEEEE
T ss_pred CCCceEEeccccCCCCCccCCCCCcCCCcHHHHHHHHHHHHHhhhhcccccccchhhhhhHHHHHHHhcCCccccceEEE
Confidence 69999999999999999999999999999999999998 88999999999999999
Q ss_pred eeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhc
Q psy8864 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKL 316 (749)
Q Consensus 237 l~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~ 316 (749)
| ||||++||++|+++|+.+..-..+|+||||||+||+
T Consensus 326 l---~pDi~eFi~~K~~~g~~~~~~~~~n~Sv~v~D~Fm~---------------------------------------- 362 (739)
T 1l1l_A 326 G---SNDDQDFISMKQDQEKLMHHRWASNNSVAVDSAFSG---------------------------------------- 362 (739)
T ss_dssp E---ETTCHHHHHGGGCHHHHHHTGGGEEEEEEECTTCCC----------------------------------------
T ss_pred E---CccHHHHHHhCcccchhhccccccCceeeeCHHHHH----------------------------------------
Confidence 7 699999999999998654322348999999999981
Q ss_pred CCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhh------CCCCccceEeeeccccccccCCCCCcccccccccc
Q psy8864 317 GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR------SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSI 390 (749)
Q Consensus 317 g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~------~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SI 390 (749)
|++|++++|+||+|||+|+|+||++ +|+++.|+|++||||+||+|+++ ++|||+||
T Consensus 363 --------------~~~I~~~~~etGePgi~f~D~~N~~~~~~~~~~~~~~g~I~~SNpC~EI~l~~~----~~CNL~Si 424 (739)
T 1l1l_A 363 --------------YQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLANG----EPCNLFEV 424 (739)
T ss_dssp --------------HHHHHHHHHHHSCCEEEEHHHHHHCSSGGGCCCTTTTTTEEEECTTCCSEEETT----CBCCEEEE
T ss_pred --------------HHHHHHHHHHcCCCeeEechhhhccccccccCCcccCccEEecCcceeeecccC----Cccchhhh
Confidence 7899999999999999999999996 68889999999999999999987 48999999
Q ss_pred cchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHH-HcCCCC----CCHHHH
Q psy8864 391 NLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLH-IMKIPY----SSKEAI 465 (749)
Q Consensus 391 NL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~-~lgi~y----~S~ea~ 465 (749)
| .|+. +.|||+ |+++|+++||||||| |++.||+|+++++|+++|+||||+|||||+|+ ++|++| +|.+|.
T Consensus 425 n--~~v~-~~~d~~-l~~~v~~avr~LdnV-d~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~~gi~Y~~~y~s~~a~ 499 (739)
T 1l1l_A 425 F--PLIA-EEQGWD-LQEVFALAARYAKRV-TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDP 499 (739)
T ss_dssp C--HHHH-HHTTCC-HHHHHHHHHHHHHHH-TTSCCSCHHHHHHHHHHCCCEEEECSHHHHHHHHHSSCSEEEEEEEECT
T ss_pred h--hhcc-ccccHH-HHHHHHHHHHHHHhh-hhccCCcHHHHHHHHhCCccccccccHHHHHHHHhCCCccccccCHHHH
Confidence 9 4654 357897 999999999999999 99999999999999999999999999999999 799997 333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCC
Q psy8864 466 KFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGM 545 (749)
Q Consensus 466 ~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~ 545 (749)
+| +|+|+++.|+++. ...+...+. .....+|+. +++||+
T Consensus 500 -------------------el-~e~g~~~~~~~~~----------~~~~~~~~~-------~~~~~~w~~----~~~~G~ 538 (739)
T 1l1l_A 500 -------------------ET-HEAIKVPVYDKRA----------IKMVDQLYK-------AVVKADQDY----SKTLGC 538 (739)
T ss_dssp -------------------TT-CCEEEEEEECHHH----------HHHHHHHHH-------HHHHHHHHH----HHHHTC
T ss_pred -------------------HH-hhhcCccccCHHH----------HHHHHHHHH-------HHHHHHHHH----HHHhCC
Confidence 33 4677777665321 111111111 112457765 778999
Q ss_pred ccc-ceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccC-
Q psy8864 546 RNS-NCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISR- 623 (749)
Q Consensus 546 RNs-~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~- 623 (749)
||| +++|||||||||+|+|||+||||+|+++|+|+. +|.++||+ +++|+++|+|.++ .+...+|+||+++.
T Consensus 539 rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~---~~~~~n~~-~~~l~~~g~~~~~---~i~~~~g~v~~ip~~ 611 (739)
T 1l1l_A 539 NESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI---RFQDSDPL-LPALKACGYRTEA---DIYTENTTCVEFPIK 611 (739)
T ss_dssp CCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE---EEETTCTH-HHHHHHTTCEEEE---CSSSTTEEEEEEEEE
T ss_pred CChhheEEECCCccHHHhcCCCCcccccceeeEEEEe---eecccchH-HHHHHHcCCCchH---HHhhcCCceeecccc
Confidence 998 999999999999999999999999999999987 58889996 5999999999865 44557899999885
Q ss_pred CChhHHhhcccccCCCHHHHHHHHHHHcc-cccccCcceeeeCCCCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Q psy8864 624 IPDDLRKIYATAFEISPNWIIEAGSVRQK-WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 624 ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~-~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~ 696 (749)
+|++++.+|+|||||+|++||+|+|++|| |||||||+|||++++..++|.++ ++||+.||||+||+|+.+++
T Consensus 612 ~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~Ti~~~~~~~~~l~~l-~~awk~GlK~~yylR~~~~t 684 (739)
T 1l1l_A 612 AVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVESL-LRQYRFITKSTSLLPYFGGS 684 (739)
T ss_dssp CTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHHH-HHHTTTTCSEEEEEECCCCC
T ss_pred CchhhhhhcccHHhCCHHHHHHHHHHhcccccccccceeEEeCCchHHHHHHH-HHHHHhCCcEEEEecCCCcc
Confidence 68889999999999999999999999999 59999999999997668999999 57999999999999998876
No 8
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=96.45 E-value=1.5e-05 Score=89.67 Aligned_cols=67 Identities=4% Similarity=-0.035 Sum_probs=61.9
Q ss_pred cccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHh
Q psy8864 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELR 251 (749)
Q Consensus 185 iG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK 251 (749)
.|.++|+||++|+.+.++.+.++|+++|+++++.....++|+|.|+|+.++.+..+|||+.+|+..|
T Consensus 1 C~~~~s~i~~~~~~~~~~~~i~~g~~~~~~i~~~v~~~i~~~g~~~~~~~~~V~s~d~d~~k~i~~k 67 (454)
T 1dq3_A 1 CIDGKAKIIFENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWGIDVSNVPIYVKSFDPESKRVVKGK 67 (454)
T ss_dssp CEETTCEEEEESSSCEEEEEHHHHHHHHGGGCEEEETTTTEEEEECTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCcEEEEeCCCeeccccccccchhhhhhhhHHHHHHHhcCcEecCCcEEEEEEcCCCCEEEEeE
Confidence 3788999999999999999999999999999998889999999999999999999999998887655
No 9
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=94.60 E-value=0.37 Score=55.73 Aligned_cols=242 Identities=14% Similarity=0.086 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCC----CC--cccccc--cccccchhhhcc-
Q psy8864 328 LYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTS----KN--EIGVCN--LGSINLTLHMKN- 398 (749)
Q Consensus 328 r~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~----~~--e~avCN--L~SINL~~~v~~- 398 (749)
-+|++..+++..+..-|..++.|..-...+. ...+ .--|+-..|... ++ -.+..| +.+|||++..-.
T Consensus 251 ~dl~~~a~~~~ak~~fpn~~~~d~~~~~~g~--~~~~--~~MgCR~~l~~~~~~~g~~~~~g~Gn~gvvTINLpRia~~~ 326 (605)
T 1h7b_A 251 YDIKQLALECASKRMYPDIISAKNNKAITGS--SVPV--SPMGCRSFLSVWKDSTGNEILDGRNNLGVVTLNLPRIALDS 326 (605)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEHHHHHHHHCC--SSCC--CCBTTTBCCCCCBCTTSCBCCTTCBEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHHHhCCcccCchhhcccccccCCc--ccce--eeecchhcchhhhhccCCcCccccceeeeEEeeHHHHHHHh
Confidence 3788888888888899999998865222110 0001 112332222111 10 123344 458999998533
Q ss_pred -----CCCC--hHHHHHHHHHHHHHHHHHhhcc------CCcH--------------HHHHHHhhhcCC-cccccchHHH
Q psy8864 399 -----GKLD--PIKLKKTIRIAMRMLDNVIDIN------YYAV--------------KKAKYSNLRHRP-VGLGIMGFQD 450 (749)
Q Consensus 399 -----g~~D--~~~l~~~v~~avr~LD~vId~~------~yp~--------------~~~~~~n~~~R~-IGlGv~Glad 450 (749)
|..| |+.|.+.+.++.+.|+.=.+.- .+|. ++....-+..|. +.||+.||++
T Consensus 327 ~~~a~gd~~~F~~~Ld~~l~l~~~~L~~r~~~l~~~~~~~~p~L~~~G~~~~~l~~~d~i~~~~~~~~~t~tiG~iGL~E 406 (605)
T 1h7b_A 327 YIGTQFNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHE 406 (605)
T ss_dssp EETTEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBSHHHHTTTTSEEEEEEECHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhCcccccccCCcccHHHHhccCCcceeeeHHHHHH
Confidence 3222 4678888888988887533321 1111 012222222344 7999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcccCCCCchhhHHHHHHHhcccccccCchh
Q psy8864 451 CLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR-YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529 (749)
Q Consensus 451 ~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~-~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~ 529 (749)
++. +. |.+|+.+|+++|...+-+.+ +|.|- |. .+.+ |-+..
T Consensus 407 ~~~-l~-------a~~f~~~Il~~m~~~~~~~~----~e~g~~~~-l~aT-------PAEs~------------------ 448 (605)
T 1h7b_A 407 LNI-LV-------GRDIGREILTKMNAHLKQWT----ERTGFAFS-LYST-------PAENL------------------ 448 (605)
T ss_dssp HHH-HH-------TSCCHHHHHHHHHHHHHHHH----HHHCCEEE-EECC-------CCTTH------------------
T ss_pred HHH-HH-------HHHHHHHHHHHHHHHHHHHH----HHHCCcee-EEec-------ccccH------------------
Confidence 999 65 77899999999877666444 33342 11 1111 11100
Q ss_pred hhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHh
Q psy8864 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609 (749)
Q Consensus 530 ~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~ 609 (749)
--.-.+.+-+++|+ |.|++. .|+|.|-|
T Consensus 449 --~~Rfa~~D~k~fG~----------------i~g~td--~~YYTNS~-------------------------------- 476 (605)
T 1h7b_A 449 --CYRFCKLDTEKYGS----------------VKDVTD--KGWYTNSF-------------------------------- 476 (605)
T ss_dssp --HHHHHHHHHHHHCC----------------CTTTTS--SSSCCCTT--------------------------------
T ss_pred --HHHHHHHHHHHcCC----------------cCCCCC--CCCCCCCE--------------------------------
Confidence 00112223344551 112221 23332211
Q ss_pred hhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC--CCHHHHHHHHHHHHHcCCc
Q psy8864 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN--KSGKKLDETYKLAWLRGLK 685 (749)
Q Consensus 610 ~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~--~~~~~l~~~~~~Awk~GlK 685 (749)
.+| + -.++++...|+..+..|++..-+...-+++++ .+.+.+.++...|.+ |+-
T Consensus 477 -------------hip-----V---~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~~~~n~~a~~~lv~~~~~-~i~ 532 (605)
T 1h7b_A 477 -------------HVS-----V---EENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ-HLD 532 (605)
T ss_dssp -------------CCC-----T---TSCCCHHHHHHHHGGGGGTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH-HCS
T ss_pred -------------Eec-----C---CCCCCHHHHHHhhcccccccCCeeEEEEEcCCCCCCHHHHHHHHHHHHh-CCC
Confidence 112 1 23578999999999999999999999999985 368889999888887 543
No 10
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=32.86 E-value=66 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy8864 461 SKEAIKFADQSMEMICYYAYYASTELAEEKGR 492 (749)
Q Consensus 461 S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~ 492 (749)
++++.++.-++++..-......|+.|||.||.
T Consensus 25 d~~vee~ll~lADdFV~~V~~~ac~lAKhR~s 56 (76)
T 1h3o_B 25 DEDVEEMLLQIADDFIESVVTAACQLARHRKS 56 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57788888899988888999999999999986
Done!