BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8865
(749 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate reductase subunit alpha [Herminiimonas
arsenicoxydans]
gi|133739836|emb|CAL62887.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Herminiimonas arsenicoxydans]
Length = 966
Score = 1173 bits (3035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/752 (71%), Positives = 640/752 (85%), Gaps = 7/752 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YS VTARLLM+ I+KEVFG+E+ Q + P +Y YF++FI KGI +LL+ KL E
Sbjct: 219 MEKDPAYSTVTARLLMHTIRKEVFGREVAQANAPAEYLVYFAEFIKKGIAAELLDAKLGE 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L++AL PERDLQF YLGL+ LYDRYFLHI RIEMPQ F+MR+AMGL+LNE+NR
Sbjct: 279 FDLKKLADALKPERDLQFGYLGLQTLYDRYFLHIADQRIEMPQAFYMRVAMGLALNEANR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 EERAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLGGIYDAIKENALLAK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNGRSQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 399 YAGGLGNDWTPVRSLGAHIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+K G
Sbjct: 459 HMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y YE + G++KLFKKI AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 KAFEEAYTGYEAKAARGELKLFKKIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGS+N+ HMK+GKLD +KL+KTIR AMRMLDNV
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNMPAHMKDGKLDHVKLQKTIRTAMRMLDNV 638
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV KA+ SNLRHRPVG+GIMGFQDCLH+M+IPY+S +A++FAD SME +CYYAY
Sbjct: 639 IDINYYAVNKARDSNLRHRPVGMGIMGFQDCLHMMRIPYASNDAVQFADNSMEAVCYYAY 698
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
YASTELAEE+GRYSSY GSLWD+GILPQDSLKLL ERG+KYL+ + SE+ +W LR RI
Sbjct: 699 YASTELAEERGRYSSYKGSLWDRGILPQDSLKLLADERGAKYLEADYSETFDWTPLRARI 758
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+FGMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 759 KEFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 818
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE MI++LKYFDG+L++I RIP DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 819 GLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSL 878
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIKG 719
NIY+S SGKKLD+TYKLAWLRGLKTTYYLR++ A + +KS + G +++V+ S G
Sbjct: 879 NIYMSGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSKTGALNAVD----SGGG 934
Query: 720 YNKNLQEIK--NNKKCLINSEINDVNECESCQ 749
+ Q + C++ ECE+CQ
Sbjct: 935 SSTAAQSAAETDGPACILRPGDAGFEECEACQ 966
>gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate reductase subunit alpha
[Janthinobacterium sp. Marseille]
gi|151279943|gb|ABR88353.1| ribonucleoside-diphosphate reductase alpha chain [Janthinobacterium
sp. Marseille]
Length = 963
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/749 (71%), Positives = 635/749 (84%), Gaps = 3/749 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YS VTARLLM+ I+KEVFG E+ Q D P +Y EYF KFI KGI+ +LL+ KL +
Sbjct: 218 MEKDPAYSTVTARLLMHTIRKEVFGLEVAQADAPAQYLEYFPKFIKKGIEAELLDAKLGQ 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL+PERDLQF YLGL+ LYDRYFLHI RIEMPQ F+MR+AMGL+LNE NR
Sbjct: 278 FDLKKLGDALVPERDLQFGYLGLQTLYDRYFLHIRDTRIEMPQAFYMRVAMGLALNEINR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E+IKENALL+K
Sbjct: 338 EERAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNGRSQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 398 YAGGLGNDWTPVRSLGAHIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+K G
Sbjct: 458 HMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE +Y YE + G++KLFKKI AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEAAYTGYEAKAARGELKLFKKIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+ +EI VCNLGS+N+ HMK+G+LD +KL+KT+R AMRMLDNV
Sbjct: 578 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNMPAHMKDGQLDHVKLQKTVRTAMRMLDNV 637
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLGIMGFQDCLH+M+IPY+S EA++FAD+SME +CYYAY
Sbjct: 638 IDINYYAVKKARDSNLRHRPVGLGIMGFQDCLHMMRIPYASDEAVQFADRSMEAVCYYAY 697
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
YASTELAEE+GRYSSY GSLWD+GILPQDSLKLL++ERG YL+ +++E+L+W LR RI
Sbjct: 698 YASTELAEERGRYSSYRGSLWDRGILPQDSLKLLQEERGG-YLEADLTETLDWTPLRERI 756
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+FGMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 757 KQFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 816
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE MI++LKYFDG+L++I RIP DLR IY+TAFE+ P W++EA S RQKWIDQ+QSL
Sbjct: 817 GLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYSTAFEVEPKWLVEAASRRQKWIDQAQSL 876
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR++ A + +KS + G ++N +
Sbjct: 877 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSKTG--ALNAVDSGAPSS 934
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ C++ ECE+CQ
Sbjct: 935 AAQAAAETDGPACMLRPGDAGFEECEACQ 963
>gi|399018405|ref|ZP_10720584.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum
sp. CF444]
gi|398101521|gb|EJL91737.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum
sp. CF444]
Length = 989
Score = 1167 bits (3020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/714 (74%), Positives = 631/714 (88%), Gaps = 2/714 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVTARLLM+ I+KEVFGKE+ Q D P +Y EYF+K+I KGI+ +LL+ KLA+
Sbjct: 223 MEKDPAYSQVTARLLMHTIRKEVFGKEVAQADAPAEYLEYFAKYIKKGIEAELLDSKLAQ 282
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ A+ PERDLQF YLGL+ LYDRYFLHI+G RIEMPQ F+MR+AMGLSLNE +R
Sbjct: 283 FDLKKLAEAIKPERDLQFGYLGLQTLYDRYFLHIQGTRIEMPQAFYMRVAMGLSLNEIDR 342
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E I+FYNLLSSF+FM STPTLFNSGT+RSQLSSCYL+TV DDL GI+E+IKENALL+K
Sbjct: 343 EARTIEFYNLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLDGIYEAIKENALLAK 402
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 403 YAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 462
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+KFG
Sbjct: 463 HMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFG 522
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y YE + G++KLFKK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 523 KAFEEAYTGYEAKAARGELKLFKKVQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 582
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGS+N+ H+ NG++D KL+KTIR AMRMLDNV
Sbjct: 583 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNMPAHLVNGEIDHAKLQKTIRTAMRMLDNV 642
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLGIMGFQDCLH+ ++PY+S +A++FAD+SME +CYYAY
Sbjct: 643 IDINYYAVKKARDSNLRHRPVGLGIMGFQDCLHMKRVPYASMDAVEFADRSMEAVCYYAY 702
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELAEE+GRYSSY GSLWD+GILPQDSLKLL +ERG YL+ +MSE+L+W LR+RI
Sbjct: 703 WASTELAEERGRYSSYRGSLWDRGILPQDSLKLLAQERGG-YLEADMSETLDWPALRSRI 761
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+FGMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 762 SEFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 821
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE MI++LKYFDG+L++I RIP DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 822 GLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSL 881
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLD 713
NIY++ SGK+LDETYKLAWLRGLKTTYYLR+I A + +KS + G +++V +D
Sbjct: 882 NIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVAVD 935
>gi|340789060|ref|YP_004754525.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha
[Collimonas fungivorans Ter331]
gi|340554327|gb|AEK63702.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Collimonas fungivorans Ter331]
Length = 974
Score = 1166 bits (3017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/759 (71%), Positives = 639/759 (84%), Gaps = 12/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YS VTARLLM+ I+KEVFGKE+ Q D P Y EYF KFI KGI+ LL+ KLA+
Sbjct: 218 MEKDPAYSTVTARLLMHTIRKEVFGKEVAQADAPEAYLEYFPKFIKKGIEADLLDAKLAQ 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL PERDLQF YLGL+ LYDRYFLH+ IRIEMPQ F+MR+AMGL+LNE NR
Sbjct: 278 FDLKALGEALKPERDLQFGYLGLQTLYDRYFLHVREIRIEMPQAFYMRVAMGLALNEVNR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYNLLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E+IKENALL+K
Sbjct: 338 EARAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 398 YAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+K G
Sbjct: 458 HMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y YE + G ++LFKKI AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEEAYTGYEARAARGDLRLFKKIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK+G+LD KL+KTI AMRMLDNV
Sbjct: 578 VGMVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHMKDGQLDHAKLQKTINTAMRMLDNV 637
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLGIMGFQDCLH+M++PY+S+ A++FAD+SME +CY+AY
Sbjct: 638 IDINYYAVKKARDSNLRHRPVGLGIMGFQDCLHMMRVPYASQAAVEFADKSMEAVCYHAY 697
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELAEE+GRYSSY GSLWD+GILPQDSLKLL +ERG YL+ +MS SL+W +LR RI
Sbjct: 698 WASTELAEERGRYSSYRGSLWDRGILPQDSLKLLAEERGG-YLEADMSASLDWTELRGRI 756
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+FGMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 757 KEFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 816
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE MI++LKYFDG+L++I RIP DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 817 GLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSL 876
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIKG 719
NIY++ SGKKLDETYKLAWLRGLKTTYYLR+I A + +KS + G +++V++D + G
Sbjct: 877 NIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGALNAVSVDGGASGG 936
Query: 720 YNKNL---------QEIKNNKKCLINSEINDVNECESCQ 749
QE+ + C + ECE+CQ
Sbjct: 937 AAATYGTAAVAAAPQEL-DGPACTMRPGDPGFEECEACQ 974
>gi|329902474|ref|ZP_08273119.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Oxalobacteraceae bacterium IMCC9480]
gi|327548766|gb|EGF33403.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Oxalobacteraceae bacterium IMCC9480]
Length = 969
Score = 1158 bits (2996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/754 (69%), Positives = 642/754 (85%), Gaps = 7/754 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP Y+ VTAR+LM+ I+KEVFGKE+ Q D Y EYF +FI+ GI +LL+ KLA
Sbjct: 218 MEKDPAYTTVTARILMHVIRKEVFGKEVAQADAQAHYLEYFPQFIHNGIAAELLDAKLAG 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL+P+RDLQF Y+GL+ LYDRYFLHI IRIEMPQ F+MR+AMGL+LNE+ R
Sbjct: 278 FDLDRLAKALVPDRDLQFGYIGLQTLYDRYFLHIRDIRIEMPQAFYMRVAMGLALNEAKR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF+FM STPTLFNSGT+RSQLSSCYL+TV DDL GI+++IK+NALL+K
Sbjct: 338 EERAIEFYNLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLEGIYDAIKDNALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 398 YAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV++K +W LFSP +VPDLH+K G
Sbjct: 458 HMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGSWMLFSPSEVPDLHDKVG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE +Y YE G++++FKK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 RAFEAAYTGYEAAAARGELRMFKKVEALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK+G+LD +KL+KTIRIAMRMLDNV
Sbjct: 578 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHMKDGQLDHVKLQKTIRIAMRMLDNV 637
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KA+ SN+RHRPVGLGIMGFQDCLHIM++PY+S EA+ FAD+SME +CYYAY
Sbjct: 638 IDINYYAVQKARDSNMRHRPVGLGIMGFQDCLHIMRVPYASAEAVSFADKSMEAVCYYAY 697
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+G YSSY GSLWD+GILPQDSLKLL +ERG YL+ ++SE+++W LR RI
Sbjct: 698 TASTELAEERGAYSSYKGSLWDRGILPQDSLKLLMEERGG-YLETDLSEAMDWTPLRARI 756
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+FGMRNSNCVAIAPTATISNIIGV+A IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 757 KQFGMRNSNCVAIAPTATISNIIGVAACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 816
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MI++LKYFDG+L++I R+P +LR IYATAFEI P+W++EA S RQKWIDQ+QSL
Sbjct: 817 DLWDEVMISDLKYFDGSLARIDRVPQELRAIYATAFEIEPSWLVEAASRRQKWIDQAQSL 876
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEIS--- 716
NIY++ SGKKLDETYKLAWLRGLKTTYYLR+I A + +KS + G +++V+ D +S
Sbjct: 877 NIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGSLNAVSADGVSSGV 936
Query: 717 -IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ Y ++ + C++ + ECE+CQ
Sbjct: 937 ALSAYTTAGADV-DGPSCVLRPGDDGFEECEACQ 969
>gi|398835460|ref|ZP_10592822.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum
sp. YR522]
gi|398216246|gb|EJN02799.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum
sp. YR522]
Length = 996
Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/706 (73%), Positives = 623/706 (88%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVT+RLLM+ I+KEVFG E+ Q D P +Y EYF K+I KGID +LL+ KLA+
Sbjct: 223 MEKDPAYSQVTSRLLMHTIRKEVFGHEVAQADAPAEYLEYFGKYIKKGIDAELLDTKLAQ 282
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ A+ PERDLQF Y+GL+ LYDRYFLHI+G RIEMPQ F+MR+AMGLSLNE NR
Sbjct: 283 FDLAKLAAAIKPERDLQFGYIGLQTLYDRYFLHIQGTRIEMPQAFYMRVAMGLSLNEVNR 342
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY+LLSSF+FM STPTLFNSGT+RSQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 343 EERAIEFYDLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVSDDLEGIYDAIKENALLAK 402
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 403 FAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 462
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+KFG
Sbjct: 463 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFG 522
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+Y YE + G+IK+FKK+ A LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 523 RAFEEAYTGYEARAARGEIKVFKKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 582
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGS+NL H+ NG+LD +KL+KT+R AMRMLDNV
Sbjct: 583 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHLVNGELDHVKLQKTVRTAMRMLDNV 642
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVG+GIMGFQDCLH+ ++PY+SK+A++FAD+SME +CYYAY
Sbjct: 643 IDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHVKRVPYASKDAVEFADRSMEAVCYYAY 702
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELAEE+GRY+SY GSLWD+GILPQDSLKLL +ERG YL+ + SE+++W LR RI
Sbjct: 703 WASTELAEERGRYTSYRGSLWDRGILPQDSLKLLAQERGG-YLETDSSETMDWTALRARI 761
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 762 AEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 821
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE M+A+LKYFDG+L++I R+P DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 822 GLWDEVMVADLKYFDGSLAKIDRVPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSL 881
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGK+LDETYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 882 NIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRAG 927
>gi|409408950|ref|ZP_11257385.1| ribonucleoside reductase large subunit [Herbaspirillum sp. GW103]
gi|386432272|gb|EIJ45100.1| ribonucleoside reductase large subunit [Herbaspirillum sp. GW103]
Length = 994
Score = 1155 bits (2989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/730 (72%), Positives = 627/730 (85%), Gaps = 5/730 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVT+RLLM+ I+KEVFGKE+ Q D P +Y EYF ++I KGID +LL+ KLA+
Sbjct: 221 MEKDPAYSQVTSRLLMHTIRKEVFGKEVAQADAPAEYLEYFPQYIKKGIDAELLDTKLAQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ AL PERDLQF Y+GL+ LYDRYFLHI G RIEMPQ F+MR+AMGL+LNE +R
Sbjct: 281 FDLAKLAAALKPERDLQFGYIGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY+LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E+IKENALL+K
Sbjct: 341 ETRAIEFYDLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 401 FAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+KFG
Sbjct: 461 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+Y YE + G++KLFKK+ A LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 521 RAFEEAYTAYEAKAARGELKLFKKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGS+NL H+ NG+LD KL+KTIR AMRMLDNV
Sbjct: 581 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNV 640
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVG+GIMGFQDCLHI ++PY+S +A++FAD+SME +CYYAY
Sbjct: 641 IDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAY 700
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+GRY+SY GSLWD+GILPQDSLKLL +ERG YL+ + +E+L+W LR RI
Sbjct: 701 MASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQERGG-YLETDTTETLDWAALRARI 759
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 760 AEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 819
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE M+A+LKYFDG+L++I RIP DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 820 GLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSL 879
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
NIY++ SGK+LDETYKLAWLRGLKTTYYLR+I A + +KS G L+ +++ G
Sbjct: 880 NIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRAGA----LNAVAVDGG 935
Query: 721 NKNLQEIKNN 730
++ N
Sbjct: 936 AGSMASASGN 945
>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large subunit [Herbaspirillum seropedicae
SmR1]
gi|300072506|gb|ADJ61905.1| ribonucleoside reductase (large chain) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 994
Score = 1153 bits (2983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/714 (73%), Positives = 623/714 (87%), Gaps = 2/714 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVT+RLLM+ I+KEVFGKE+ Q D P +Y EYF +++ KGI+ +LL+ KLA+
Sbjct: 221 MEKDPAYSQVTSRLLMHTIRKEVFGKEVAQADAPAEYLEYFPQYVKKGIEAELLDTKLAQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ AL PERDLQF Y+GL+ LYDRYFLHI G RIEMPQ F+MR+AMGL+LNE +R
Sbjct: 281 FDLAKLAAALKPERDLQFGYIGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY+LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E+IKENALL+K
Sbjct: 341 ETRAIEFYDLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 401 FAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+KFG
Sbjct: 461 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+Y YE + G++KLFKK+ A LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 521 RAFEEAYTAYEAKAARGELKLFKKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ NG+LD KL+KTIR AMRMLDNV
Sbjct: 581 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNV 640
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVG+GIMGFQDCLHI ++PY+S +A++FAD+SME +CYYAY
Sbjct: 641 IDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAY 700
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+GRY+SY GSLWD+GILPQDSLKLL +ERG YL+ + +E+L+W LR RI
Sbjct: 701 MASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQERGG-YLETDSTETLDWAALRARI 759
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 760 AEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 819
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE M+A+LKYFDG+L++I RIP DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 820 GLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSL 879
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLD 713
NIY++ SGK+LDETYKLAWLRGLKTTYYLR+I A + +KS G +++V +D
Sbjct: 880 NIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRAGALNAVAVD 933
>gi|415955521|ref|ZP_11557459.1| ribonucleoside reductase large subunit, partial [Herbaspirillum
frisingense GSF30]
gi|407757023|gb|EKF67094.1| ribonucleoside reductase large subunit, partial [Herbaspirillum
frisingense GSF30]
Length = 871
Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/730 (71%), Positives = 627/730 (85%), Gaps = 5/730 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVT+RLLM+ I+KEVFGKE+ Q D P +Y EYF +++ KGID +LL+ KLA+
Sbjct: 98 MEKDPAYSQVTSRLLMHTIRKEVFGKEVAQADAPAEYLEYFPQYVKKGIDAELLDTKLAQ 157
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ A+ PERDLQF Y+GL+ LYDRYFLHI G RIEMPQ F+MR+AMGL+LNE +R
Sbjct: 158 FDLAKLAAAIKPERDLQFGYIGLQTLYDRYFLHISGTRIEMPQAFYMRVAMGLALNEIDR 217
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY+LLSSF+FM STPTLFNSGT+RSQLSSCYL+TV DDL GI+E+IKENALL+K
Sbjct: 218 EARAIEFYDLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLDGIYEAIKENALLAK 277
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 278 FAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 337
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+KFG
Sbjct: 338 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFG 397
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+Y YE + G++KLFKK+ A LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 398 RAFEEAYTGYEAKAARGELKLFKKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 457
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ NG+LD KL+KTIR AMRMLDNV
Sbjct: 458 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNV 517
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVG+GIMGFQDCLHI ++PY+S +A++FAD+SME +CYYAY
Sbjct: 518 IDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAY 577
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+GRY+SY GSLWD+GILPQDSLKLL +ERG YL+ + +E+L+W LR RI
Sbjct: 578 MASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQERGG-YLETDTTETLDWAALRARI 636
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 637 AEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 696
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE M+A+LKYFDG+L++I RIP DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 697 GLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSL 756
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
NIY++ SGK+LDETYKLAWLRGLKTTYYLR+I A + +KS G L+ +++ G
Sbjct: 757 NIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRAGA----LNAVAVDGG 812
Query: 721 NKNLQEIKNN 730
++ N
Sbjct: 813 AGSMASASGN 822
>gi|445499258|ref|ZP_21466113.1| ribonucleoside-diphosphate reductase subunit alpha
[Janthinobacterium sp. HH01]
gi|444789253|gb|ELX10801.1| ribonucleoside-diphosphate reductase subunit alpha
[Janthinobacterium sp. HH01]
Length = 975
Score = 1134 bits (2932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/763 (68%), Positives = 630/763 (82%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVTAR+L++ I+KEVFGKE+ Q +Y YF ++I KGI N+LL+ KLAE
Sbjct: 218 MEKDPAYSQVTARILLHTIRKEVFGKEVAQAAAAAEYVTYFPQYIAKGIANELLDTKLAE 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ AL+ +RDLQF Y+GL+ LYDRYFLH+ +RIEMPQ F+MR+AMGL+LNES+R
Sbjct: 278 FDLARLAKALVADRDLQFGYIGLQTLYDRYFLHVRDVRIEMPQAFYMRVAMGLALNESDR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYNLLS+F+FM STPTLFNSGT+RSQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 338 EARAIEFYNLLSTFDFMSSTPTLFNSGTLRSQLSSCYLTTVSDDLEGIYDAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 398 FAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF++LRKNTGDDRRRTHDMN A W+PD+FMKRV++K WTLFSP D PDLH+ G
Sbjct: 458 HMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDMFMKRVMEKGEWTLFSPSDTPDLHDLVG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G+I++FKKI+AL LWRK+LSMLFETGHPWITFKD CNIRSPQ H
Sbjct: 518 KAFEKAYLGYEAKAAAGEIRVFKKIAALDLWRKMLSMLFETGHPWITFKDPCNIRSPQSH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT +EI VCNLGS+N+ HMK GKLD +KLKKTIR AMRMLDNV
Sbjct: 578 VGMVHSSNLCTEITLNTGPDEIAVCNLGSVNMPAHMKEGKLDHVKLKKTIRTAMRMLDNV 637
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV KA+ +N+RHRPVGLG+MGFQDCLH+M+IP+SS EA+ FAD SME +CYYAY
Sbjct: 638 IDINYYAVDKARNANMRHRPVGLGVMGFQDCLHMMRIPFSSNEAVSFADTSMEAVCYYAY 697
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+G Y SY GSLWD+GILPQDS+KLL ERG YL+ + S +++W +R+RI
Sbjct: 698 LASTELAEERGHYQSYKGSLWDRGILPQDSIKLLADERGG-YLEQDTSAAMDWTPVRDRI 756
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
KKFGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 757 KKFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTEINAYLVRDLKAR 816
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MI++LKYFDG+L++I RIP DLR IYATAFE+SP W++EA S RQKWIDQ+QSL
Sbjct: 817 DLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVSPTWLVEAASRRQKWIDQAQSL 876
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG- 719
NIY++ SGKKLDETYKLAWLRGLKTTYYLR+ SA + +KS + G L+ +++ G
Sbjct: 877 NIYMAGASGKKLDETYKLAWLRGLKTTYYLRTTSATHTEKSTSKTGA----LNAVAVDGG 932
Query: 720 -------------YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ C + + ECE+CQ
Sbjct: 933 MSASAIAAATPAAVAPVAAAEEDGAACYLRPGDDGFEECEACQ 975
>gi|395763949|ref|ZP_10444618.1| ribonucleotide-diphosphate reductase subunit alpha
[Janthinobacterium lividum PAMC 25724]
Length = 984
Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/714 (71%), Positives = 615/714 (86%), Gaps = 2/714 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVTAR+L++ ++KEVFGKE+ Q +Y YF ++I KGI N LLNP LA
Sbjct: 217 MEKDPAYSQVTARILLHTVRKEVFGKEVPQSAAAAEYLTYFPQYIAKGIANDLLNPVLAS 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ A++ +RDLQF Y+GL+ LYDRYFLHI +RIEMPQ F+MR+AMGL+LNE++R
Sbjct: 277 FDLERLAKAIVADRDLQFGYIGLQTLYDRYFLHIHDVRIEMPQAFYMRVAMGLALNEADR 336
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY+LLSSF+FM STPTLFNSGT+RSQLSSCYLSTV DDL GI+++IK+NALL+K
Sbjct: 337 EARAIEFYSLLSSFDFMSSTPTLFNSGTLRSQLSSCYLSTVSDDLEGIYDAIKDNALLAK 396
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 397 YAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 456
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF++LRKNTGDDRRRTHDMN + W+PD+FMKRV++K WTLFSP + PDLH+ G
Sbjct: 457 HMDIEEFLDLRKNTGDDRRRTHDMNTSNWIPDMFMKRVMEKGEWTLFSPSETPDLHDLVG 516
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G+I+ FKKI AL LWRK+LSMLFETGHPWITFKD CNIRSPQ H
Sbjct: 517 KAFEKAYLGYEAKAAAGEIRSFKKIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQSH 576
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT +EI VCNLGS+N+ HMK GKLD +KL KTIR AMRMLDNV
Sbjct: 577 VGVVHSSNLCTEITLNTGPDEIAVCNLGSVNMPAHMKEGKLDHVKLAKTIRTAMRMLDNV 636
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KA+ SN+RHRPVG+G+MGFQDCLH+M+IP++S A+ FAD SME +CYYAY
Sbjct: 637 IDINYYAVEKARNSNMRHRPVGMGVMGFQDCLHMMRIPFASDAAVSFADTSMETVCYYAY 696
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+GRY SY GSLWD+GILPQDS+KLL +ERG YL+V+ S +++W +R RI
Sbjct: 697 LASTELAEERGRYESYAGSLWDRGILPQDSVKLLAEERGG-YLEVDSSSAMDWTPVRERI 755
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
KFGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 756 AKFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTEINGYLVRDLKAR 815
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MI++LKYFDG+L +I RIP DLR IYATAFE+SP+W++EA S RQKWIDQ+QSL
Sbjct: 816 DLWDEVMISDLKYFDGSLVKIDRIPQDLRDIYATAFEVSPSWLVEAASRRQKWIDQAQSL 875
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLD 713
NIY++ SGKKLDETYKLAWLRGLKTTYYLR+I+A + +KS + G +++V +D
Sbjct: 876 NIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIAATHMEKSTSKTGALNAVAVD 929
>gi|393778161|ref|ZP_10366443.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia sp.
PBA]
gi|392714896|gb|EIZ02488.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia sp.
PBA]
Length = 975
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/763 (67%), Positives = 624/763 (81%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP YSQVTAR+L++ I+KE+ G+E+ Q ++ +Y EYF K+I +GID +LL+ KLA+
Sbjct: 218 IEQDPAYSQVTARILLHTIRKEILGEEVTQGEMVTRYAEYFPKYIKRGIDAELLDEKLAQ 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RD QFNYLGL+ LYDRYFLH +RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 278 FDLQKLGAALDASRDFQFNYLGLQTLYDRYFLHHNDVRIEMPQAFFMRVAMGLALNEIDR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 338 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 398 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 458 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y+ YE++ G++KLFKKI A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEEAYVAYEDKVARGELKLFKKIPAVQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL HMK LD KLKKTIR AMR
Sbjct: 578 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLLAHMKADASGAMVLDHDKLKKTIRTAMR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVG+GIMGFQDCLH M++PY+S A++FAD SME +
Sbjct: 638 MLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHAMRVPYASDAAVQFADTSMEAV 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQDSLKLL +ERG Y++V+ S +++W
Sbjct: 698 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDSLKLLAEERGG-YVEVDHSSTMDWDS 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK +GMRNSNC+AIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N +LV+
Sbjct: 757 LRGRIKSYGMRNSNCIAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDFLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 817 DLKANGLWDEVMVADLKYFDGSLARIDRIPQDLRALYATAFEVEPQWLVEAASRRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+I A +A+KS + +L+ +
Sbjct: 877 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHAEKST----VSRSSLNAV 932
Query: 716 SIKGYNKNLQEIKNNKK---------CLINSEINDVNECESCQ 749
++ G + + + C + ECE+CQ
Sbjct: 933 AVNGGSDGVSAVAAAAPAMPEAEGAVCTMRPGDPGFEECEACQ 975
>gi|113869189|ref|YP_727678.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
eutropha H16]
gi|113527965|emb|CAJ94310.1| Ribonucleoside-diphosphate reductase alpha subunit [Ralstonia
eutropha H16]
Length = 977
Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/711 (71%), Positives = 607/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I+KE+ G E+ Q ++ +Y EYF KFI +GI+ +LL+ +LA
Sbjct: 219 IEKDPDYSQVTARILLHTIRKEILGTEVTQAEMSTRYAEYFPKFIARGIEAELLDEQLAT 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RD QFNYLGL+ LYDRYFLHI+ RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 279 FDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 339 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 399 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 459 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPATCPDLHDKVG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE++Y+ YE + G++KLFKK+ AL LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 KEFEKAYLGYEAKAASGELKLFKKLPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HM LD KL+KT+R AMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMAKQADGTYALDHAKLQKTVRTAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNLRHRPVG+GIMGFQDCLH+++ PYSS A+KFAD SME +
Sbjct: 639 MLDNVIDINYYAVDKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY+GSLWD+GILPQDSLKLL +ERG YL V+MS +++W
Sbjct: 699 CYYAYHASTELAEERGRYSSYEGSLWDRGILPQDSLKLLAEERGG-YLDVDMSATMDWDA 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG+LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 818 DLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLD+TYKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTMAATHVEKSTVSRG 928
>gi|456062541|ref|YP_007501511.1| ribonucleoside-diphosphate reductase, alpha subunit [beta
proteobacterium CB]
gi|455439838|gb|AGG32776.1| ribonucleoside-diphosphate reductase, alpha subunit [beta
proteobacterium CB]
Length = 988
Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/754 (67%), Positives = 620/754 (82%), Gaps = 6/754 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+LM+ I+KE+ G+E+ Q D+ +Y YF+K+IN+GI +LL+P++ E
Sbjct: 236 IEKDPAYSQVTARILMHVIRKEILGREVLQGDMQAEYSTYFAKYINEGISAELLDPRMRE 295
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL RDLQFNYLGL+ LYDRYFLHIE RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 296 FDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEMPQAFFMRVAMGLSLNELDR 355
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LS+F+FM STPTLFNS T R QLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 356 ERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTVDDDLDGIYEALKENALLSK 415
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 416 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 475
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN + W+PDLFMKRV++ WTLFSP + PDLH+KFG
Sbjct: 476 HLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFSPSNTPDLHDKFG 535
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y+ YE + G++K F++I A LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 536 KAFEEAYVAYEKKADAGELKPFRRIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 595
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
+G++HSSNLCTEITLNT+++EI VCNLGS+NLT HM +GK LD KL+KTIR AMR
Sbjct: 596 IGVVHSSNLCTEITLNTNESEIAVCNLGSVNLTAHMTTDASGKMILDHEKLQKTIRTAMR 655
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+ +IPY+S EA+KFAD SME +
Sbjct: 656 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQRIPYASDEAVKFADSSMEAV 715
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY AS ELAEE+G YS+Y GSLWD+GILPQDS+ LL ERG YL+V+ S ++NW
Sbjct: 716 CYYAYQASNELAEERGVYSTYKGSLWDRGILPQDSVALLAAERGG-YLEVDSSSTMNWDG 774
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL +KSNLSGEFT +N YLV+
Sbjct: 775 LRARIKQFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLFVKSNLSGEFTVVNEYLVR 834
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE MIA+LKYFDG LS+I R+P DLR +YATAFE+ P+W++EA S RQKWID
Sbjct: 835 DLKDRGLWDEVMIADLKYFDGTLSKIDRVPQDLRDLYATAFEVEPSWLVEAASRRQKWID 894
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY+ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS G +
Sbjct: 895 QAQSLNIYMGGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVASGQLNAVSSGG 954
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ G + + + + C + ECE+CQ
Sbjct: 955 GVNGTDASAAQELDGPACTMRPGDAGFEECEACQ 988
>gi|430808366|ref|ZP_19435481.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus sp.
HMR-1]
gi|429499277|gb|EKZ97715.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus sp.
HMR-1]
Length = 979
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/760 (67%), Positives = 623/760 (81%), Gaps = 12/760 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I+KE+ G E+ Q ++ KY EYF KFI +GI+ +LL+ KLA
Sbjct: 221 IEKDPAYSQVTARILLHTIRKEILGAEVTQTEMATKYAEYFPKFIARGIEAELLDEKLAT 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL RD QFNYLGL+ LYDRYFLH++ +RIEMPQ FFMR+AMGL+L E +R
Sbjct: 281 YDLARLGAALDASRDFQFNYLGLQTLYDRYFLHVDEVRIEMPQAFFMRVAMGLALEEKDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 401 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPASCPDLHDKVG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G++KLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 521 KAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL H+ LD KL+KTIR AMR
Sbjct: 581 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDHAKLQKTIRTAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SNLRHRPVG+GIMGFQDCLH+++ PY+S A+KFAD SME +
Sbjct: 641 MLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAAVKFADTSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY ASTELAEE+GRYS+Y+GSLWD+GILPQDSLKLL +ERG YL+V++S +++W
Sbjct: 701 CYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGG-YLEVDLSSTMDWDS 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG+L++I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS + G +++V+
Sbjct: 880 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVQRGSLNAVSSGA 939
Query: 715 ISIKGYN-----KNLQEIKNNKKCLINSEINDVNECESCQ 749
G + C + ECE+CQ
Sbjct: 940 DGQSGIDAAASAAPAMPEAEGAVCTMRPGDPGFEECEACQ 979
>gi|94312019|ref|YP_585229.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
metallidurans CH34]
gi|93355871|gb|ABF09960.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
metallidurans CH34]
Length = 979
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/760 (67%), Positives = 622/760 (81%), Gaps = 12/760 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I+KE+ G E+ Q ++ KY EYF KFI +GI+ +LL+ KLA
Sbjct: 221 IEKDPAYSQVTARILLHTIRKEILGAEVTQTEMATKYAEYFPKFIARGIEAELLDEKLAT 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL RD QFNYLGL+ LYDRYFLH++ +RIEMPQ FFMR+AMGL+L E +R
Sbjct: 281 YDLARLGAALDASRDFQFNYLGLQTLYDRYFLHVDEVRIEMPQAFFMRVAMGLALEEKDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 401 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPASCPDLHDKVG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G++KLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 521 KAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL H+ LD KL+KTIR AMR
Sbjct: 581 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDHAKLQKTIRTAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SNLRHRPVG+GIMGFQDCLH+++ PY+S A+KFAD SME +
Sbjct: 641 MLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAAVKFADTSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY ASTELAEE+GRYS+Y+GSLWD+GILPQDSLKLL +ERG YL V++S +++W
Sbjct: 701 CYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGG-YLDVDLSSTMDWDS 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG+L++I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS + G +++V+
Sbjct: 880 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVQRGSLNAVSSGA 939
Query: 715 ISIKGYN-----KNLQEIKNNKKCLINSEINDVNECESCQ 749
G + C + ECE+CQ
Sbjct: 940 DGQSGIDAAASAAPAMPEAEGAVCTMRPGDPGFEECEACQ 979
>gi|194290771|ref|YP_002006678.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
taiwanensis LMG 19424]
gi|193224606|emb|CAQ70617.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
taiwanensis LMG 19424]
Length = 979
Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/711 (71%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I+KE+ G E+ Q ++ +Y EYF KFI +GI +LL+ KLA
Sbjct: 221 IEKDPDYSQVTARILLHTIRKEILGTEVTQAEMATRYAEYFPKFIARGIAAELLDEKLAT 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RD QFNYLGL+ LYDRYFLHI+ RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 281 FDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 EARAIEFYQLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVSDDLEGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 401 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+K G
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENAEWTLFSPSTCPDLHDKVG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G++KLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 521 KAFEKAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ LD KL+KTIR AMR
Sbjct: 581 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLAKQADGSYALDHAKLQKTIRTAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SNLRHRPVG+GIMGFQDCLH+++ PYSS A+KFAD SME +
Sbjct: 641 MLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY ASTELAEE+GRY +Y GSLWD+GILPQDSLKLL +ERG YL V+MS S++W
Sbjct: 701 CYYAYQASTELAEERGRYETYTGSLWDRGILPQDSLKLLAEERGG-YLDVDMSSSMDWTS 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG+LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVSRG 930
>gi|427400630|ref|ZP_18891868.1| ribonucleoside-diphosphate reductase, alpha subunit [Massilia
timonae CCUG 45783]
gi|425720143|gb|EKU83066.1| ribonucleoside-diphosphate reductase, alpha subunit [Massilia
timonae CCUG 45783]
Length = 976
Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/706 (71%), Positives = 608/706 (86%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
MEKDP YSQVTAR+L++ I+KEVFG E+ Q +Y YF +++ KGI +LL+ +L +
Sbjct: 215 MEKDPAYSQVTARILLHTIRKEVFGHEVPQAGAAAEYLTYFPQYVAKGIQAELLDEELGK 274
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ A++ +RDLQF Y+GL+ LYDRYFLH+ +RIEMPQ F+MR+AMGL+L E +R
Sbjct: 275 YDLERLAKAIVADRDLQFGYIGLQTLYDRYFLHVRDVRIEMPQAFYMRVAMGLALREDDR 334
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYNLLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+++IKENALLSK
Sbjct: 335 EARAIEFYNLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVGDDLEGIYDAIKENALLSK 394
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNGRSQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 395 FAGGLGNDWTPVRALGSRIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 454
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV++K +WTLFSP + PDLH+ G
Sbjct: 455 HLDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGSWTLFSPSETPDLHDLTG 514
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G++ +FKKI A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 515 KAFEKAYLAYETKAANGEMAVFKKIEAMDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 574
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS +EI VCNLGS+NL HMK LD +KL+KTIR AMRMLDNV
Sbjct: 575 VGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHMKGDGLDHVKLQKTIRTAMRMLDNV 634
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KA+ SNLRHRPVG+G+MG QDCLH+M+IP++S++A+KFAD SME +CYYAY
Sbjct: 635 IDINYYAVEKARNSNLRHRPVGMGVMGHQDCLHMMRIPFASEQAVKFADVSMEAVCYYAY 694
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+GRY +Y GSLWD+GILPQDS+KLL +ERG YL+ + SES++W +R RI
Sbjct: 695 LASTELAEERGRYETYTGSLWDRGILPQDSIKLLAEERGG-YLEQDTSESMDWTPVRERI 753
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 754 KQFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTEINSYLVRDLKAR 813
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MIA+LKYFDG+LS+I R+P DLR IYATAFE+ P W++EA S RQKWIDQ+QSL
Sbjct: 814 DLWDEVMIADLKYFDGSLSKIDRVPQDLRDIYATAFEVEPKWLVEAASRRQKWIDQAQSL 873
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLDETYKLAWLRGLKTTYYLR+I+A + +KS G
Sbjct: 874 NIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIAATHLEKSTTRTG 919
>gi|374370404|ref|ZP_09628408.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
basilensis OR16]
gi|373098056|gb|EHP39173.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
basilensis OR16]
Length = 980
Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/763 (66%), Positives = 626/763 (82%), Gaps = 15/763 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I+KE+ G E+ Q ++ +Y +YF KFI +GI+ +LL+ KLA
Sbjct: 219 IEKDPAYSQVTARILLHTIRKEILGAEVTQTEMVSRYADYFPKFIARGIEAELLDEKLAT 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL +RD QFNYLGL+ LYDRYFLHI+ +RIEMPQ FFMR+AMGL+L E +R
Sbjct: 279 YDLARLGAALDAQRDFQFNYLGLQTLYDRYFLHIDEVRIEMPQAFFMRVAMGLALGEKDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 339 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 399 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+ G
Sbjct: 459 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGEWTLFSPATCPDLHDLVG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G++KLFKKI A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 KAFEQAYLGYEAKAARGELKLFKKIPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL H+K +G LD KL+KT+R AMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKQLADGTQVLDHAKLEKTVRTAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SNLRHRPVG+GIMGFQDCLH++++PY+S A++FAD SME +
Sbjct: 639 MLDNVIDINYYAVEKARSSNLRHRPVGMGIMGFQDCLHLLRLPYASDAAVQFADTSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY AS+ELAEE+GRYS+Y+GSLWD+GILPQDSLKLL +ERG YL+V+ S +++W
Sbjct: 699 CYYAYRASSELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGG-YLEVDHSSAMDWDS 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG L++I RIP DLR IYATAFE+ P+W++EA S RQKWID
Sbjct: 818 DLKERGLWDEVMVADLKYFDGKLARIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS G + S +
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVSRGSLNAVSSGS 937
Query: 712 LDEISIKGYNKNLQEI-----KNNKKCLINSEINDVNECESCQ 749
S G ++ C + +ECE+CQ
Sbjct: 938 EGGFSAAGIDQAAASAPAMPEAEGAVCTMRPGDAGFDECEACQ 980
>gi|309783063|ref|ZP_07677782.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
5_7_47FAA]
gi|404397127|ref|ZP_10988920.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
5_2_56FAA]
gi|308918171|gb|EFP63849.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
5_7_47FAA]
gi|348610686|gb|EGY60372.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
5_2_56FAA]
Length = 994
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/711 (71%), Positives = 609/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ +LL+ KLA+
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSTRYVDYFPQFIERGINAELLDDKLAQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RD QFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLARLGAALDASRDFQFNYLGLQTLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 400 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE++ G+IKLFKK+ AL LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 520 KAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 580 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQPDGSVVLDHEKLKKTVRTAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVG+GIMGFQD LH++++PY+S+ A++FAD SME +
Sbjct: 640 MLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQDSLKLL +ERG YL+ +MS +++W
Sbjct: 700 CYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGG-YLEADMSSTMDWDS 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 929
>gi|241664220|ref|YP_002982580.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
pickettii 12D]
gi|240866247|gb|ACS63908.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
pickettii 12D]
Length = 994
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/711 (71%), Positives = 609/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ +LL+ KLA+
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RD QFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLARLGAALDASRDFQFNYLGLQTLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 400 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE++ G+IKLFKK+ AL LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 520 KAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 580 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVG+GIMGFQD LH++++PY+S+ A++FAD SME +
Sbjct: 640 MLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQDSLKLL +ERG YL+ +MS +++W
Sbjct: 700 CYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGG-YLEADMSSTMDWDS 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 929
>gi|339327268|ref|YP_004686961.1| ribonucleoside-diphosphate reductase subunit alpha [Cupriavidus
necator N-1]
gi|338167425|gb|AEI78480.1| ribonucleoside-diphosphate reductase subunit alpha [Cupriavidus
necator N-1]
Length = 977
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/711 (71%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I+KE+ G E+ Q ++ +Y EYF KFI +GI +LL+ +LA
Sbjct: 219 IEKDPDYSQVTARILLHTIRKEILGTEVTQAEMSSRYAEYFPKFIARGIQAELLDEQLAT 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL RD QFNYLGL+ LYDRYFLHI+ RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 279 YDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 339 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 399 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 459 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGEWTLFSPATCPDLHDKVG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE++Y+ YE + G++KLFKK+ AL LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 KEFEKAYLGYEAKAASGELKLFKKLPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HM LD KL+KT+R AMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMTKQADGTYALDHAKLQKTVRTAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNLRHRPVG+GIMGFQDCLH+++ PYSS A+KFAD SME +
Sbjct: 639 MLDNVIDINYYAVDKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY ASTELAEE+GRYS+Y+GSLWD+GILPQDSLKLL +ERG YL V++S +++W
Sbjct: 699 CYYAYKASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGG-YLDVDLSSTMDWDA 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG+LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 818 DLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVSRG 928
>gi|187930115|ref|YP_001900602.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
pickettii 12J]
gi|187727005|gb|ACD28170.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
pickettii 12J]
Length = 994
Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/711 (71%), Positives = 608/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ +LL+ KLA+
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RD QFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLARLGAALDASRDFQFNYLGLQTLYDRYFLHISETRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 400 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE++ G+IKLFKK+ AL LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 520 KAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 580 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVG+GIMGFQD LH++++PY+S A++FAD SME +
Sbjct: 640 MLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASDAAVQFADTSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQDSLKLL +ERG YL+ +MS +++W
Sbjct: 700 CYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGG-YLEADMSSTMDWDS 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPLWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 929
>gi|134294682|ref|YP_001118417.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
vietnamiensis G4]
gi|387901271|ref|YP_006331610.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Burkholderia sp. KJ006]
gi|134137839|gb|ABO53582.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
vietnamiensis G4]
gi|387576163|gb|AFJ84879.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Burkholderia sp. KJ006]
Length = 996
Score = 1108 bits (2865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/711 (71%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q D+ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVVQADMSARYAEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ S WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGSDWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 ADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDTSESLDWST 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|73542625|ref|YP_297145.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
eutropha JMP134]
gi|72120038|gb|AAZ62301.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
Length = 979
Score = 1107 bits (2864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/762 (67%), Positives = 616/762 (80%), Gaps = 16/762 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I+KE+ G E+ Q ++ +Y EYF KFI +GI +LL+ KLA
Sbjct: 221 IEKDPDYSQVTARILLHTIRKEILGAEVTQAEMTTRYAEYFPKFIARGIAAELLDEKLAT 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RD QFNYLGL+ LYDRYFLHI+ RIEMPQ FFMR+AMGL+LNE++R
Sbjct: 281 FDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEADR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 EARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 401 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G++KLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 521 KAFEQAYLGYEAKAASGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ LD KL+KTIR AMR
Sbjct: 581 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLTKQADGSYVLDHAKLQKTIRTAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SNLRHRPVG+GIMGFQDCLH+++ PY+S A+KFAD SME +
Sbjct: 641 MLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAAVKFADTSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY ASTELAEE+GRY +Y GSLWD+GILPQDSLKLL +ERG YL+V+ S S++W
Sbjct: 701 CYYAYQASTELAEERGRYETYAGSLWDRGILPQDSLKLLAEERGG-YLEVDHSSSMDWDS 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG+LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS G S+N
Sbjct: 880 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVSRG--SLNAVSS 937
Query: 716 SIKG--------YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G + C + ECE+CQ
Sbjct: 938 GSDGGSAMDAAAASAPAMPEAEGAVCTMRPGDPGFEECEACQ 979
>gi|172059583|ref|YP_001807235.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
ambifaria MC40-6]
gi|171992100|gb|ACB63019.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
ambifaria MC40-6]
Length = 999
Score = 1107 bits (2864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/711 (71%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVLQAEMATRYTEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 AEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDQDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSESLDWTT 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|167586059|ref|ZP_02378447.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
ubonensis Bu]
Length = 990
Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/711 (70%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 219 IEKDPAYSQVTARILLHTIRREILGEEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQ 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 279 FDLKRLGDALDANRDLQFGYLGLQTLYDRYFLHVDGSRIEMPQAFFMRVAMGLSLNEIDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 339 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 399 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 459 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 519 AEFETAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+T+ +AMR
Sbjct: 579 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQAAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W +
Sbjct: 699 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSESLDWSE 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I R+P DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 818 DLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPTWLVEAASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 878 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 928
>gi|115350551|ref|YP_772390.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
ambifaria AMMD]
gi|115280539|gb|ABI86056.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
ambifaria AMMD]
Length = 999
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/711 (71%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVLQAEMTTRYTEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 AEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSESLDWTT 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|170699975|ref|ZP_02891002.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
ambifaria IOP40-10]
gi|170135123|gb|EDT03424.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
ambifaria IOP40-10]
Length = 999
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/711 (71%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 280 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGTDWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 700 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSESLDWTT 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|171463020|ref|YP_001797133.1| ribonucleotide-diphosphate reductase subunit alpha
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171192558|gb|ACB43519.1| ribonucleoside-diphosphate reductase, alpha subunit
[Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 990
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/760 (67%), Positives = 617/760 (81%), Gaps = 16/760 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+LM+ I KE+ GKE+ Q D+ +Y YF+K+IN+GI +LL+P++ E
Sbjct: 236 IEKDPAYSQVTARILMHVIHKEILGKEVLQGDMQAEYSTYFAKYINEGISAELLDPRMRE 295
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL RDLQFNYLGL+ LYDRYFLHIE RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 296 FDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEMPQAFFMRVAMGLSLNELDR 355
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LS+F+FM STPTLFNS T R QLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 356 ERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTVEDDLDGIYEALKENALLSK 415
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 416 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 475
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDM+ + W+PDLFMKRV++ WTLFSP + PDLH KFG
Sbjct: 476 HLDIEEFLELRKNTGDDRRRTHDMSTSNWIPDLFMKRVMENGEWTLFSPSNTPDLHGKFG 535
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y+ YE + G++K F++I A LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 536 KAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 595
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
+G++HSSNLCTEITLNT+++EI VCNLGS+NLT HM NGK LD KL++T+R AMR
Sbjct: 596 IGVVHSSNLCTEITLNTNEDEIAVCNLGSVNLTAHMTTDANGKMILDHEKLQRTVRTAMR 655
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+ +IPY+S EA+KFAD SME +
Sbjct: 656 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQRIPYASDEAVKFADSSMEAV 715
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY AS ELAEE+G YS+Y GSLWD+GILPQDS+ LL ERG YL+V+ S +++W
Sbjct: 716 CYYAYQASNELAEERGVYSTYKGSLWDRGILPQDSVALLAAERGG-YLEVDSSSTMDWNG 774
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK++GMRNSNCVAIAPTATISNIIGVSA IEPT++NL +KSNLSGEFT +N YLV+
Sbjct: 775 LRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLFVKSNLSGEFTVVNEYLVR 834
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE MIA+LKYFDG LS+I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 835 DLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFEVDPTWLVEAASRRQKWID 894
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS G L+ +
Sbjct: 895 QAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVASG----QLNAV 950
Query: 716 SIKGYNKNLQEI------KNNKKCLINSEINDVNECESCQ 749
S G + C + ECE+CQ
Sbjct: 951 SSGGGVNGTDAAAAGGVEADGPVCTMRPGDAGFEECEACQ 990
>gi|107021672|ref|YP_619999.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
cenocepacia AU 1054]
gi|116688618|ref|YP_834241.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
cenocepacia HI2424]
gi|170731917|ref|YP_001763864.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
cenocepacia MC0-3]
gi|105891861|gb|ABF75026.1| Ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
cenocepacia AU 1054]
gi|116646707|gb|ABK07348.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
cenocepacia HI2424]
gi|169815159|gb|ACA89742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
cenocepacia MC0-3]
Length = 1001
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 ADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQEAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDTSESLDWTA 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|78065155|ref|YP_367924.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
sp. 383]
gi|77965900|gb|ABB07280.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
Length = 998
Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVT+R+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTSRILLHTIRREILGEEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 AEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS +EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLVKQADGSFALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A+ FAD+SME +
Sbjct: 641 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVAFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDTSESLDWTS 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|421473516|ref|ZP_15921619.1| ribonucleoside-diphosphate reductase, alpha subunit, partial
[Burkholderia multivorans ATCC BAA-247]
gi|400220732|gb|EJO51244.1| ribonucleoside-diphosphate reductase, alpha subunit, partial
[Burkholderia multivorans ATCC BAA-247]
Length = 939
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q D+ +Y EYF +F+ +G++ LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 280 FDLKRLGEALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 ADFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVPKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 700 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDSSESLDWAT 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167895963|ref|ZP_02483365.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 7894]
Length = 995
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|421477360|ref|ZP_15925187.1| ribonucleoside-diphosphate reductase, alpha subunit, partial
[Burkholderia multivorans CF2]
gi|400226640|gb|EJO56703.1| ribonucleoside-diphosphate reductase, alpha subunit, partial
[Burkholderia multivorans CF2]
Length = 957
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q D+ +Y EYF +F+ +G++ LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 280 FDLKRLGEALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 ADFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVPKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 700 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDSSESLDWAT 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|145588392|ref|YP_001154989.1| ribonucleotide-diphosphate reductase subunit alpha
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145046798|gb|ABP33425.1| ribonucleoside-diphosphate reductase, alpha subunit
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 993
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/760 (67%), Positives = 623/760 (81%), Gaps = 13/760 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP +SQVTAR+LM+ I+KE+ GKE+ Q D+ +Y YF+K+IN+GI +LL+P++ E
Sbjct: 236 IEKDPAFSQVTARILMHVIRKEILGKEVLQGDMQSEYGTYFAKYINEGISAELLDPRMRE 295
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL RDLQFNYLGL+ LYDRYFLHIE RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 296 FDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEMPQAFFMRVAMGLSLNELDR 355
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LS+F+FM STPTLFNS T R QLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 356 ERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTVEDDLDGIYEALKENALLSK 415
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 416 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 475
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN + W+PDLFMKRV++ WTLFSP + PDLH+K+G
Sbjct: 476 HLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMENGDWTLFSPSNTPDLHDKYG 535
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y+ YE + G++K F++I A LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 536 KAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 595
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
+G++HSSNLCTEITLNT++ EI VCNLGS+NLT HM NGK LD KL++T+R AMR
Sbjct: 596 IGVVHSSNLCTEITLNTNETEIAVCNLGSVNLTAHMTTDANGKLVLDHEKLQRTVRTAMR 655
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+ +IPY+S+EA+KFAD SME +
Sbjct: 656 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQRIPYASEEAVKFADSSMEAV 715
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY AS ELAEE+G YS+Y GSLWD+GILPQDS+ LL +ERG YL+V+ S +++W
Sbjct: 716 CYYAYQASNELAEERGVYSTYTGSLWDRGILPQDSVALLAQERGG-YLEVDNSSTMDWSG 774
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK++GMRNSNCVAIAPTATISNIIGVSA IEPT++NL +KSNLSGEFT +N YLV+
Sbjct: 775 LRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLFVKSNLSGEFTVVNEYLVR 834
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE MIA+LKYFDG LS+I RIP DLR +YATAFE+ P+W++EA S RQKWID
Sbjct: 835 DLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFEVEPSWLVEAASRRQKWID 894
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLNIY+ SGKKLD+TYKLAWLRGLKTTYYLR+++A + +KS G ++SV+
Sbjct: 895 QAQSLNIYMGGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVASGQLNSVSSGG 954
Query: 715 ISIKGYNKNLQEIKNNKK-----CLINSEINDVNECESCQ 749
+ G + + C + ECE+CQ
Sbjct: 955 -GVNGTDATAASAAGGVEADGPVCTMRPGDAGFEECEACQ 993
>gi|402567672|ref|YP_006617017.1| ribonucleotide reductase subunit alpha [Burkholderia cepacia GG4]
gi|402248869|gb|AFQ49323.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Burkholderia cepacia GG4]
Length = 997
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/711 (70%), Positives = 607/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVT+R+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTSRILLHTIRREILGEEVVQSEMSARYAEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLTRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGSRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 AEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KL++TIR+AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLQRTIRVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SE+L+W
Sbjct: 701 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSEALDWTS 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|189349323|ref|YP_001944951.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
multivorans ATCC 17616]
gi|189333345|dbj|BAG42415.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
multivorans ATCC 17616]
Length = 997
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q D+ +Y EYF +F+ +G++ LL+ KL +
Sbjct: 222 IEKDPAYSQVTARILLHTIRREILGEEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQ 281
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 282 FDLKRLGEALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 341
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 342 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 401
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 402 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 461
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 462 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFG 521
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 522 ADFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 581
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 582 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMR 641
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 642 MLDNVIDINYYAVPKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 701
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 702 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDSSESLDWAT 760
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 761 LRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 820
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 821 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 880
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 881 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 931
>gi|167912608|ref|ZP_02499699.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 112]
Length = 953
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167740268|ref|ZP_02413042.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 14]
gi|167817488|ref|ZP_02449168.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 91]
gi|167847375|ref|ZP_02472883.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei B7210]
Length = 954
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|221213240|ref|ZP_03586215.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
multivorans CGD1]
gi|221166692|gb|EED99163.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
multivorans CGD1]
Length = 995
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q D+ +Y EYF +F+ +G++ LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 280 FDLKRLGEALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 ADFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVPKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 700 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDSSESLDWAT 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167721299|ref|ZP_02404535.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei DM98]
Length = 942
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|161525958|ref|YP_001580970.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
multivorans ATCC 17616]
gi|221202416|ref|ZP_03575448.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
multivorans CGD2M]
gi|221208124|ref|ZP_03581129.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
multivorans CGD2]
gi|160343387|gb|ABX16473.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
multivorans ATCC 17616]
gi|221172027|gb|EEE04469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
multivorans CGD2]
gi|221177693|gb|EEE10108.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
multivorans CGD2M]
Length = 995
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q D+ +Y EYF +F+ +G++ LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 280 FDLKRLGEALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 ADFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVPKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 700 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDSSESLDWAT 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167904348|ref|ZP_02491553.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei NCTC 13177]
Length = 956
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167618619|ref|ZP_02387250.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
thailandensis Bt4]
Length = 953
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKL+KKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167564162|ref|ZP_02357078.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
oklahomensis EO147]
Length = 953
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ ++Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPV 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I R+P DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167574514|ref|ZP_02367388.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
oklahomensis C6786]
Length = 944
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ ++Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPV 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I R+P DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|300690380|ref|YP_003751375.1| ribonucleoside-diphosphate reductase subunit alpha [Ralstonia
solanacearum PSI07]
gi|299077440|emb|CBJ50066.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
solanacearum PSI07]
gi|344169190|emb|CCA81513.1| ribonucleoside-diphosphate reductase, alpha subunit [blood disease
bacterium R229]
Length = 987
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/711 (71%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ KLA+
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMAARYADYFPQFIKRGINAGLLDEKLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ L+DRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLFDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 ESRAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE +Y+ YE + G+IKLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 KAFETAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVTQADGSVALDHDKLKKTVRTAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLGIMGFQD LH+++IPY+S A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALHVLRIPYASDAAVQFADNSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQDSLKLL +ERG YL+ ++S S++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGG-YLEADLSSSMDWDS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI+++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRARIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|307731038|ref|YP_003908262.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
sp. CCGE1003]
gi|307585573|gb|ADN58971.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. CCGE1003]
Length = 1000
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILEEEVTQAEMGERYAEYFPQFIKRGVQAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 AEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+TI +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKRTISVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA+KFAD SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQDS+KLL + RG Y++V+ SES++W +
Sbjct: 696 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVKLLAEARGG-YVEVDSSESMDWSE 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI +GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRQRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|312795098|ref|YP_004028020.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
rhizoxinica HKI 454]
gi|312166873|emb|CBW73876.1| Ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1)
[Burkholderia rhizoxinica HKI 454]
Length = 1046
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/776 (65%), Positives = 625/776 (80%), Gaps = 28/776 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P YSQVTARLL++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 272 IEKEPAYSQVTARLLLHTIRREILGEEVLQSEMGARYAEYFPQFLKRGVEAELLDEKLLQ 331
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDL+F YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 332 FDLKKLGDALDASRDLKFGYLGLQTLYDRYFLHVDGQRIEMPQAFFMRVAMGLALNEIDR 391
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LS+F+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 392 EARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLEGIYEALKENALLSK 451
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 452 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 511
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRVI+ WTLFSP PDLH+KFG
Sbjct: 512 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEGGDWTLFSPSSCPDLHDKFG 571
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE++Y+ YE + G++KLFKKI A LWRK+L MLFETGHPWITFKD C +RSPQQH
Sbjct: 572 AEFEQAYVAYEEKAARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCXVRSPQQH 631
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS NEI VCNLGS+NL HMK G LD KLK+TI +AMR
Sbjct: 632 VGVVHSSNLCTEITLNTSDNEIAVCNLGSVNLVAHMKQGADXGYVLDHDKLKRTISVAMR 691
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S++A++FAD+SME I
Sbjct: 692 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQQAVEFADRSMEAI 751
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELA E+GRYSSY GSLWD+GILPQD+LKLL RG Y++V+ SE+++W
Sbjct: 752 CYYAYWASTELASERGRYSSYRGSLWDRGILPQDTLKLLADSRGG-YVEVDSSETMDWAA 810
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 811 LRERIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 870
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR+ YATAFE+ P W++EA + RQKWID
Sbjct: 871 DLKARGLWDEVMVADLKYFDGSLARIDRIPADLRETYATAFEVDPKWLVEAAARRQKWID 930
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+I+A + +KS G +++V +
Sbjct: 931 QAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTIAATHVEKSTVAHGALNAVPSSD 990
Query: 715 ISI---------------------KGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + Q+ C++ +ECE+CQ
Sbjct: 991 GGVGAMHGAGGVSGSATARNAGVHAAADAGSQDEIAGPVCMLRPGDAGFDECEACQ 1046
>gi|206561766|ref|YP_002232531.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
cenocepacia J2315]
gi|198037808|emb|CAR53752.1| putative ribonucleoside reductase [Burkholderia cenocepacia J2315]
Length = 1003
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/711 (70%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 223 IEKDPAYSQVTARILLHTIRREILGEEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQ 282
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 283 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 342
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 343 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 402
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 403 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 462
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 463 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 522
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 523 ADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 582
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 583 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 642
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 643 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 702
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 703 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSESLDWTT 761
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 762 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 821
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 822 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 881
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 882 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 932
>gi|416907777|ref|ZP_11931087.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Burkholderia sp. TJI49]
gi|325528899|gb|EGD05935.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
sp. TJI49]
Length = 963
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/711 (71%), Positives = 602/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 222 IEKDPAYSQVTARILLHTIRREILGEEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQ 281
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH+ G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 282 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVGGTRIEMPQAFFMRVAMGLSLNEIDR 341
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 342 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 401
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 402 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 461
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 462 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFG 521
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 522 AEFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 581
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 582 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 641
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 642 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 701
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 702 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDSSESLDWTA 760
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 761 LRARIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 820
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 821 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 880
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 881 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 931
>gi|171318521|ref|ZP_02907673.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
ambifaria MEX-5]
gi|171096307|gb|EDT41213.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
ambifaria MEX-5]
Length = 1001
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 ADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDTSESLDWTA 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRARIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|444364598|ref|ZP_21164888.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
cenocepacia BC7]
gi|444365873|ref|ZP_21165977.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
cenocepacia K56-2Valvano]
gi|443592687|gb|ELT61473.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
cenocepacia BC7]
gi|443605444|gb|ELT73298.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
cenocepacia K56-2Valvano]
Length = 1001
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/711 (70%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 ADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSESLDWTT 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|421867552|ref|ZP_16299210.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Burkholderia cenocepacia H111]
gi|358072490|emb|CCE50088.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Burkholderia cenocepacia H111]
Length = 1001
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/711 (70%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G+D LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 ETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 ADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ SESL+W
Sbjct: 701 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSESLDWTT 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|167580511|ref|ZP_02373385.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
thailandensis TXDOH]
Length = 950
Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/711 (69%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKL+KKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ P++S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|53720600|ref|YP_109586.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei K96243]
gi|53726101|ref|YP_104056.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
mallei ATCC 23344]
gi|67643594|ref|ZP_00442339.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Burkholderia mallei GB8 horse 4]
gi|76810342|ref|YP_334882.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1710b]
gi|121601276|ref|YP_991781.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
mallei SAVP1]
gi|124384186|ref|YP_001027274.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
mallei NCTC 10229]
gi|126439753|ref|YP_001060485.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 668]
gi|126448585|ref|YP_001082789.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
mallei NCTC 10247]
gi|126454560|ref|YP_001067749.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1106a]
gi|134280283|ref|ZP_01766994.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 305]
gi|166998594|ref|ZP_02264452.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei PRL-20]
gi|167825889|ref|ZP_02457360.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 9]
gi|217420768|ref|ZP_03452273.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 576]
gi|226196789|ref|ZP_03792368.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237813880|ref|YP_002898331.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei MSHR346]
gi|242315545|ref|ZP_04814561.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1106b]
gi|254178878|ref|ZP_04885532.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei ATCC 10399]
gi|254180585|ref|ZP_04887183.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1655]
gi|254190978|ref|ZP_04897484.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|254199123|ref|ZP_04905538.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei S13]
gi|254202775|ref|ZP_04909138.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei FMH]
gi|254208117|ref|ZP_04914467.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei JHU]
gi|254257988|ref|ZP_04949042.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1710a]
gi|254299328|ref|ZP_04966778.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 406e]
gi|386860430|ref|YP_006273379.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1026b]
gi|403520184|ref|YP_006654318.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei BPC006]
gi|418538893|ref|ZP_13104494.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1026a]
gi|418539663|ref|ZP_13105246.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1258a]
gi|418545913|ref|ZP_13111151.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1258b]
gi|418552364|ref|ZP_13117229.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 354e]
gi|52211014|emb|CAH37002.1| putative ribonucleoside reductase [Burkholderia pseudomallei
K96243]
gi|52429524|gb|AAU50117.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei ATCC 23344]
gi|76579795|gb|ABA49270.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1710b]
gi|121230086|gb|ABM52604.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei SAVP1]
gi|124292206|gb|ABN01475.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei NCTC 10229]
gi|126219246|gb|ABN82752.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 668]
gi|126228202|gb|ABN91742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1106a]
gi|126241455|gb|ABO04548.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei NCTC 10247]
gi|134248290|gb|EBA48373.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 305]
gi|147747022|gb|EDK54099.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei FMH]
gi|147752011|gb|EDK59078.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei JHU]
gi|157809187|gb|EDO86357.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 406e]
gi|157938652|gb|EDO94322.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|160694792|gb|EDP84800.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei ATCC 10399]
gi|169656953|gb|EDS88350.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei S13]
gi|184211124|gb|EDU08167.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1655]
gi|217396180|gb|EEC36197.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 576]
gi|225931049|gb|EEH27057.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237505593|gb|ACQ97911.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
reductase) [Burkholderia pseudomallei MSHR346]
gi|238524966|gb|EEP88396.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Burkholderia mallei GB8 horse 4]
gi|242138784|gb|EES25186.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1106b]
gi|243065277|gb|EES47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
mallei PRL-20]
gi|254216677|gb|EET06061.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
pseudomallei 1710a]
gi|385346574|gb|EIF53249.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1026a]
gi|385364108|gb|EIF69851.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1258a]
gi|385365931|gb|EIF71584.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1258b]
gi|385373198|gb|EIF78264.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 354e]
gi|385657558|gb|AFI64981.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei 1026b]
gi|403075827|gb|AFR17407.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei BPC006]
Length = 995
Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|167920555|ref|ZP_02507646.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
pseudomallei BCC215]
Length = 952
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYHAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|83719828|ref|YP_441700.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
thailandensis E264]
gi|257137869|ref|ZP_05586131.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
thailandensis E264]
gi|83653653|gb|ABC37716.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
thailandensis E264]
Length = 995
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKL+KKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|323527396|ref|YP_004229549.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
sp. CCGE1001]
gi|323384398|gb|ADX56489.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. CCGE1001]
Length = 1006
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/711 (70%), Positives = 604/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILEEEVTQAEMGERYAEYFPQFIKRGVQAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 AEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+T+ +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKRTVSVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA+KFAD SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELA+E+GRYSSY GSLWD+GILPQDS+KLL + RG Y++V+ SES++W +
Sbjct: 696 CYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGG-YVEVDSSESMDWTE 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRSRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|344172466|emb|CCA85109.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
syzygii R24]
Length = 987
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/711 (71%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ KLA+
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILGEEVTQAEMAARYADYFPQFIKRGINAGLLDEKLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ L+DRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLFDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 ESRAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE +Y+ YE + G+IKLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 KAFETAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLIKQADGSVALDHDKLKKTVRTAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLGIMGFQD LH+++IPY+S+ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDSLHVLRIPYASEVAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQDSLKLL +ERG YL+ ++S S++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGG-YLEADLSSSMDWDS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI+++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRARIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|167837967|ref|ZP_02464826.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
thailandensis MSMB43]
Length = 956
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 220 IEKDPAYSQVTARVLLHTIRREILGEEVTQAEMATRYAEYFPQFLKRGVEAELLDDKLLQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 340 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 460 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLAKQADGTYALDEEKLKRTVSVAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 640 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASGEAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 700 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 759 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 879 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 929
>gi|407714790|ref|YP_006835355.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
phenoliruptrix BR3459a]
gi|407236974|gb|AFT87173.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
phenoliruptrix BR3459a]
Length = 1000
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/711 (70%), Positives = 604/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILEEEVTQAEMGERYAEYFPQFIKRGVQAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 AEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+T+ +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKRTVSVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA+KFAD SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELA+E+GRYSSY GSLWD+GILPQDS+KLL + RG Y++V+ SES++W +
Sbjct: 696 CYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGG-YVEVDSSESMDWTE 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRSRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|209521090|ref|ZP_03269820.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. H160]
gi|209498473|gb|EDZ98598.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. H160]
Length = 1003
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/711 (70%), Positives = 602/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +GI LL+ KL +
Sbjct: 217 IEKDPAYSQVTARILLHTIRREILEEEVTQAEMGERYAEYFPQFIKRGIGAGLLDDKLQQ 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 277 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 336
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 337 EARAIEFYNILSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVDDDLDGIYEALKENALLSK 396
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 397 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 456
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 457 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 516
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKK+ A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 517 AEFEAAYTAYEDKVARGEIKLFKKLPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 576
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+T+ +AMR
Sbjct: 577 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKRTVSVAMR 636
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S+EA++FAD+SME +
Sbjct: 637 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHMLRTPYASQEAVEFADRSMEAV 696
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQDS+ LL + RG Y++V+ SES++W
Sbjct: 697 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVALLAEARGG-YVEVDSSESMDWPA 755
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 756 LRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 815
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++E+ S RQKWID
Sbjct: 816 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPVWLVESASRRQKWID 875
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 876 QAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 926
>gi|254253305|ref|ZP_04946623.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
gi|124895914|gb|EAY69794.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
Length = 997
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/711 (70%), Positives = 604/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILGEEVVQSEMSTRYAEYFPQFLRRGVEAGLLDDKLLQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 AEFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGSYALDHDKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+ A++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+MSE+L+W
Sbjct: 701 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGG-YVEVDMSETLDWAA 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRG KTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMAGASGKKLDEVYKLAWLRGKKTTYYLRTMAATHVEKSTVAHG 930
>gi|385208004|ref|ZP_10034872.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. Ch1-1]
gi|385180342|gb|EIF29618.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. Ch1-1]
Length = 1001
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/711 (70%), Positives = 604/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILEEEVTQTEMGERYAEYFPQFIKRGVQAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LS+F+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 AEFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+T+ +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKRTVSVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA+KFAD SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELA+E+GRYSSY GSLWD+GILPQDS+KLL + RG Y++V+ SES++W +
Sbjct: 696 CYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGG-YVEVDSSESMDWTE 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|424902823|ref|ZP_18326336.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
thailandensis MSMB43]
gi|390930696|gb|EIP88097.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
thailandensis MSMB43]
Length = 965
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 190 IEKDPAYSQVTARVLLHTIRREILGEEVTQAEMATRYAEYFPQFLKRGVEAELLDDKLLQ 249
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 250 FDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 309
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++K+NALLSK
Sbjct: 310 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSK 369
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 370 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 429
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 430 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 489
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 490 AEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 549
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 550 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLAKQADGTYALDEEKLKRTVSVAMR 609
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 610 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASGEAVEFADRSMEAV 669
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL + RG Y++V+ S +L+W
Sbjct: 670 CYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGG-YVEVDTSATLDWPA 728
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 729 LRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 788
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 789 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 848
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 849 QAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 899
>gi|91785258|ref|YP_560464.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
xenovorans LB400]
gi|91689212|gb|ABE32412.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
LB400]
Length = 1001
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/711 (70%), Positives = 604/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILEEEVTQTEMGERYAEYFPQFIKRGVQAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LS+F+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 AEFETAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+T+ +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKRTVSVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA++FAD SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVRFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELA+E+GRYSSY GSLWD+GILPQDS+KLL + RG Y++V+ SES++W +
Sbjct: 696 CYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGG-YVEVDSSESMDWTE 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI ++GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRSRIAQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|170695323|ref|ZP_02886469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
graminis C4D1M]
gi|170139723|gb|EDT07905.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
graminis C4D1M]
Length = 1001
Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/711 (70%), Positives = 601/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILEEEVTQAEMGERYAEYFPQFIKRGVQAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKK+ A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 AEFEAAYTAYEDKVARGEIKLFKKVPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+T+ +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKRTVSVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA+KFAD SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELA+E+GRYSSY GSLWD+GILPQDS+KLL RG Y++V+ SES++W +
Sbjct: 696 CYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLADARGG-YVEVDSSESMDWTE 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI +GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRQRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|83746811|ref|ZP_00943859.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
solanacearum UW551]
gi|207744362|ref|YP_002260754.1| ribonucleoside reductase 1 (large chain) (partial sequence n
terminus) protein [Ralstonia solanacearum IPO1609]
gi|83726580|gb|EAP73710.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
solanacearum UW551]
gi|206595767|emb|CAQ62694.1| ribonucleoside reductase 1 (large chain) (partial sequence n
terminus) protein [Ralstonia solanacearum IPO1609]
Length = 987
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/711 (70%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQ TAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ LA+
Sbjct: 216 IEKDPAYSQATARILLHTIRREILGEEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY+LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYHLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y+ YE + G+I LFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 RAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+RIAMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLG+MGFQD LH+++IPY+++ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANEAAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQDSLKLL +ERG YL+ ++S +++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGG-YLEADLSSTMDWDS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI+++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|413958909|ref|ZP_11398148.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
sp. SJ98]
gi|413941489|gb|EKS73449.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
sp. SJ98]
Length = 1000
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/711 (69%), Positives = 606/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G++ LL+ KL +
Sbjct: 221 IEKDPAYSQVTARILLHTIRREILEEEVTQAEMGERYAEYFPQFIKRGVEAGLLDDKLQQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 281 FDLKRLGAALDQNRDLQFGYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLSLNEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 341 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 401 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+ FG
Sbjct: 461 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVVEGGDWTLFSPSTCPDLHDLFG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IKLFKK+ A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 521 ADFEKAYVAYEEKAARGEIKLFKKLPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS+ EI VCNLGS+NL HM +G LD KLK+TI +AMR
Sbjct: 581 VGVVHSSNLCTEITLNTSETEIAVCNLGSVNLVAHMVKQADGSYALDHAKLKRTISVAMR 640
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 641 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASGEAVEFADRSMEAV 700
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRY++Y GSLWD+GILPQDSLKLL + RG Y++V+ SE+++W +
Sbjct: 701 CYYAYYASTELAEERGRYATYRGSLWDRGILPQDSLKLLAEARGG-YVEVDTSETMDWAQ 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 760 LRSRISTYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+++LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 820 DLKARGLWDEVMVSDLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 880 QAQSLNIYMAGASGKKLDEVYKLAWIRGLKTTYYLRTMAATHVEKSTVAHG 930
>gi|421895461|ref|ZP_16325862.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
solanacearum MolK2]
gi|206586626|emb|CAQ17212.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
solanacearum MolK2]
Length = 987
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/711 (70%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQ TAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ LA+
Sbjct: 216 IEKDPAYSQATARILLHTIRREILGEEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y+ YE + G+I LFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 RAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+RIAMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLG+MGFQD LH+++IPY+++ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANEAAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQDSLKLL +ERG YL+ ++S +++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGG-YLEADLSSTMDWDS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI+++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|300703001|ref|YP_003744603.1| ribonucleoside-diphosphate reductase subunit alpha [Ralstonia
solanacearum CFBP2957]
gi|299070664|emb|CBJ41959.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
solanacearum CFBP2957]
Length = 987
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/711 (70%), Positives = 604/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQ TAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ LA+
Sbjct: 216 IEKDPAYSQATARILLHTIRREILGEEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y+ YE + G+IKLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 RAFEQAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKKTVRTAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLG+MGFQD LH+++IPY++ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANDAAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQDSLKLL +ERG YL+ ++S +++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGG-YLETDLSSTMDWDS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI+++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|17547524|ref|NP_520926.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
solanacearum GMI1000]
gi|17429828|emb|CAD16512.1| putative ribonucleoside reductase 1 (large chain) oxidoreductase
protein [Ralstonia solanacearum GMI1000]
Length = 987
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQ TAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ LA+
Sbjct: 216 IEKDPAYSQATARILLHTIRREILGEEVTQAEMAGRYADYFPQFIKRGINAGLLDDTLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE +Y+ YE++ G+IKLFKK+ AL LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 KAFEAAYLGYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLGIMGFQD LH+++IPY++ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALHVLRIPYATDAAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+G+LPQDSLKLL +ERG YL+ ++S +++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGVLPQDSLKLLAQERGG-YLEADLSSTMDWDG 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI++ GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRERIQQHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|295677727|ref|YP_003606251.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
sp. CCGE1002]
gi|295437570|gb|ADG16740.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. CCGE1002]
Length = 1003
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/711 (70%), Positives = 601/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 217 IEKDPAYSQVTARILLHTIRREILEEEVTQAEMGERYAEYFPQFIKRGVQAELLDDKLLQ 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH + +RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 277 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDNVRIEMPQAFFMRVAMGLSLNEIDR 336
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 337 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 396
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 397 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 456
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 457 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 516
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 517 AEFETAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 576
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+TI +AMR
Sbjct: 577 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTVALDHDKLKRTISVAMR 636
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ PY+S EA++FAD+SME +
Sbjct: 637 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHVLRTPYASPEAVEFADRSMEAV 696
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQDS+ LL + RG Y++V+ SES++W
Sbjct: 697 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVALLAEARGG-YVEVDSSESMDWPA 755
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 756 LRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 815
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++E+ S RQKWID
Sbjct: 816 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPVWLVESASRRQKWID 875
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 876 QAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 926
>gi|186477387|ref|YP_001858857.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
phymatum STM815]
gi|184193846|gb|ACC71811.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
phymatum STM815]
Length = 997
Score = 1098 bits (2840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 602/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVT+R+L++ I++E+ +E+ Q ++ +Y EYF FI +G++ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTSRILLHTIRREILEEEVTQAEMAGRYAEYFPLFIKRGVNAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLHI+G RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHIDGTRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVLEGGDWTLFSPSTCPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 AEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+TI +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKRTISVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA++FAD+SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHVLRTPYASQEAVEFADRSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQD+LKLL RG Y++V+ SES++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYRGSLWDRGILPQDTLKLLADARGG-YVEVDSSESMDWAS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRSRIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+LS+I R+P DLR IYATAFE+ W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLSRIDRVPADLRAIYATAFEVDATWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|386332372|ref|YP_006028541.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
solanacearum Po82]
gi|334194820|gb|AEG68005.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
solanacearum Po82]
Length = 987
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/711 (70%), Positives = 604/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQ TAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ LA+
Sbjct: 216 IEKDPAYSQATARILLHTIRREILGEEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E A++FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAVEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y+ YE + G+I LFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 RAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKKTVRTAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLG+MGFQD LH+++IPY+++ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANEAAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQDSLKLL +ERG YL+ ++S +++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGG-YLEADLSSTMDWDS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI+++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|330815477|ref|YP_004359182.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
gladioli BSR3]
gi|327367870|gb|AEA59226.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
gladioli BSR3]
Length = 993
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 219 IEKDPAYSQVTARILLHTIRREILGEEVAQGEMQARYAEYFPQFLKRGVEAELLDDKLLQ 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIEMPQ F+MR+AMGL+LNE +R
Sbjct: 279 FDLVRLGEALDASRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFYMRVAMGLALNEIDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 339 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKENALLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 399 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 459 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G++KLFKKI A LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 AEFEAAYLGYEEKVARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS +EI VCNLGS+NL H+ LD KLK+T+ +AMR
Sbjct: 579 VGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLAKQADGSYALDHDKLKRTVSVAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ P+SS A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFSSDTAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLLE+ RG Y++V+MSESL+W
Sbjct: 699 CYYAYWASTELAEERGRYSSYTGSLWDRGILPQDTLKLLEEARGG-YVEVDMSESLDWTS 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNC+AIAPTATISNIIGVS IEPT++NL +KSNLSGEFT +N YLV+
Sbjct: 758 LRGRISVHGMRNSNCIAIAPTATISNIIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 818 DLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNI+++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 878 QAQSLNIFMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 928
>gi|421890673|ref|ZP_16321528.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
solanacearum K60-1]
gi|378964040|emb|CCF98276.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
solanacearum K60-1]
Length = 987
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQ TAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ LA+
Sbjct: 216 IEKDPAYSQATARILLHTIRREILGEEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y+ YE + G+I LFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 RAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKKTVRTAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLG+MGFQD LH+++IPY++ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANDAAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+GILPQDSLKLL +ERG YL+ ++S +++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGG-YLETDLSSTMDWDS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI+++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|299065647|emb|CBJ36819.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
solanacearum CMR15]
Length = 987
Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/711 (70%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQ TAR+L++ I++E+ G+E+ Q ++ +Y +YF +FI +GI+ LL+ KLA+
Sbjct: 216 IEKDPAYSQATARILLHTIRREILGEEVTQAEMAGRYADYFPQFIKRGINAGLLDDKLAQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL RDLQFNYLGL+ LYDRYFLHI RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E A++FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAVEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+K G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE +Y+ YE + G+IKLFKK+ A+ LWRK+L MLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 RAFEAAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD KLKKT+R AMR
Sbjct: 576 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKA+ SNLRHRPVGLGIMGFQD LH+++IPY++ A++FAD SME +
Sbjct: 636 MLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDSLHVLRIPYATDAAVQFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRYS+Y GSLWD+G+LPQDSLKLL +ERG YL+ ++S +++W
Sbjct: 696 CYYAYWASTELAEERGRYSTYKGSLWDRGVLPQDSLKLLAQERGG-YLEADLSSTMDWDG 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI++ GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRARIQQHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+L++I RIP DLR +YATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGK LD+TYKLAWLRGLKTTYYLR+I A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925
>gi|187925408|ref|YP_001897050.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
phytofirmans PsJN]
gi|187716602|gb|ACD17826.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
phytofirmans PsJN]
Length = 1001
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/711 (70%), Positives = 602/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ +E+ Q ++ +Y EYF +FI +G+ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILKEEVTQTEMGERYAEYFPQFIKRGVQAELLDDKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE++ G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 ADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+T+ +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKRTVSVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA+KFAD SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELA+E+GRYSSY GSLWD+GILPQDS+KLL RG Y++V+ SES++W +
Sbjct: 696 CYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLADARGG-YVEVDSSESMDWTE 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY+ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|82703583|ref|YP_413149.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosospira
multiformis ATCC 25196]
gi|82411648|gb|ABB75757.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
25196]
Length = 956
Score = 1095 bits (2831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/750 (67%), Positives = 623/750 (83%), Gaps = 7/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P YS VTARLL++ ++ EV G+EI Q ++ +Y EYF FI +GI+ +LL+ +LA+
Sbjct: 213 LEKEPAYSYVTARLLLHSLRFEVLGEEIVQREMAGRYMEYFPAFIKRGIEAELLDERLAQ 272
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL ERDL+F YLGL+ LYDRYFLHI+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 273 FDLPRLAQALHAERDLKFGYLGLQTLYDRYFLHIQERRIELPQAFFMRVAMGLALNEIDR 332
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY++LS+F+FM STPTLFNSGT RSQLSSCYL+TVPDDL GI+E IKENALL+K
Sbjct: 333 EARAIEFYHVLSNFDFMSSTPTLFNSGTRRSQLSSCYLTTVPDDLDGIYEGIKENALLAK 392
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT+VR++GS IKGTNG+SQGV+PFLKVV+D AVAVNQGGKRKGA+CAYLE+W
Sbjct: 393 YAGGLGNDWTRVRAMGSHIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLESW 452
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV++ WTLFSP DVPDLH K+G
Sbjct: 453 HLDIEEFLELRKNTGDDRRRTHDMNTATWVPDLFMKRVMEGGEWTLFSPSDVPDLHEKYG 512
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE++ G++ L+K I A+ LWRK+LSMLFETGHPWITFKDACNIRSPQ H
Sbjct: 513 KAFEQAYLAYEDKVARGELDLYKTIPAVQLWRKMLSMLFETGHPWITFKDACNIRSPQNH 572
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRMLDN 419
+G++HSSNLCTEITLNT+ EI VCNLGSINL H+ + GKLD KLK+T+ +AMRMLDN
Sbjct: 573 IGVVHSSNLCTEITLNTNDQEIAVCNLGSINLAAHIDDGGKLDADKLKRTVSLAMRMLDN 632
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+YAV KA+ SNLRHRPVGLGIMGFQDCLH M+IPY+S EA++FAD++ME + Y+A
Sbjct: 633 VIDINFYAVAKARNSNLRHRPVGLGIMGFQDCLHRMRIPYASDEAVEFADRTMEAMAYHA 692
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
Y+ASTELAEE+GRY+SY GSLWD+GILPQD+L LL++ERG Y++ + S +L+W+ LR R
Sbjct: 693 YWASTELAEERGRYASYRGSLWDRGILPQDTLDLLQEERGG-YIEADRSSTLDWEALRER 751
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I+ GMRNSNC+AIAPTATISNI+GVSASIEPT++NL++KSNLSGEFT N+YLV +LKK
Sbjct: 752 IRNHGMRNSNCLAIAPTATISNIVGVSASIEPTFKNLYVKSNLSGEFTIANQYLVSDLKK 811
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWDE MI+++KYFDG L +I R+P +LRK+YATAFE+ P W+IEA + RQKWIDQSQS
Sbjct: 812 LGLWDEVMISDIKYFDGALGKIDRVPTELRKLYATAFEVEPQWLIEAAARRQKWIDQSQS 871
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LNIYI++ SGKKLDETYKLAW+RGLKTTYYLRS+ A A+KS + G + E S+
Sbjct: 872 LNIYIASVSGKKLDETYKLAWVRGLKTTYYLRSLGATSAEKSTVQAGSLNAVPAEGSLPA 931
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ C + D ECESCQ
Sbjct: 932 MGAAAVPATDVSFCSV-----DDPECESCQ 956
>gi|377821696|ref|YP_004978067.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
sp. YI23]
gi|357936531|gb|AET90090.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. YI23]
Length = 1001
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/711 (69%), Positives = 603/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVT+R+L++ I++E+ E+ Q ++ +Y EYF FI +G++ LL+ KL +
Sbjct: 222 IEKDPAYSQVTSRILLHTIRREILEGEVTQAEMGERYAEYFPLFIKRGVEAGLLDDKLQQ 281
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH+EG RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 282 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHVEGTRIELPQAFFMRVAMGLSLNEIDR 341
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 342 EARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVSDDLDGIYEALKENALLSK 401
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 402 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 461
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+ FG
Sbjct: 462 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVVEGGDWTLFSPSTCPDLHDLFG 521
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IKLFKK+ A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 522 ADFEKAYVAYEEKAARGEIKLFKKLPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 581
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS+ EI VCNLGS+NL HM +G LD KLK+TI +AMR
Sbjct: 582 VGVVHSSNLCTEITLNTSETEIAVCNLGSVNLVAHMVKQADGTYALDHAKLKRTISVAMR 641
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S +A++FAD+SME +
Sbjct: 642 MLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASGDAVEFADRSMEAV 701
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRY++Y GSLWD+GILPQDSLKLL RG Y++V+ SES++W
Sbjct: 702 CYYAYYASTELAEERGRYATYRGSLWDRGILPQDSLKLLADARGG-YVEVDSSESMDWPA 760
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI ++GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 761 LRSRISQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 820
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+++LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 821 DLKARGLWDEVMVSDLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWID 880
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 881 QAQSLNIYMAGASGKKLDEVYKLAWIRGLKTTYYLRTMAATHVEKSTVAHG 931
>gi|238026166|ref|YP_002910397.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
glumae BGR1]
gi|237875360|gb|ACR27693.1| Ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
glumae BGR1]
Length = 999
Score = 1092 bits (2823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/711 (69%), Positives = 605/711 (85%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ G+E+ Q ++ +Y EYF +F+ +G++ +LL+ KL +
Sbjct: 219 IEKDPAYSQVTARILLHTIRREILGEEVSQGEMQARYAEYFPQFLKRGVEAELLDDKLLQ 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 279 FDLVRLGEALDAGRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY++LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 339 EARAIEFYHVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKENALLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 399 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ + WTLFSP PDLH+KFG
Sbjct: 459 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE +Y+ YE + G++KLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 519 AEFEAAYLGYEEKVARGELKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS +EI VCNLGS+NL H+ +G LD KLK+T+ +AMR
Sbjct: 579 VGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++ P+SS A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFSSDAAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTEL+EE+GRYSSY GSLWD+GILPQD+LKLLE+ RG Y++V+MS SL+W
Sbjct: 699 CYYAYWASTELSEERGRYSSYRGSLWDRGILPQDTLKLLEEARGG-YVEVDMSSSLDWTS 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI GMRNSNC+AIAPTATISNIIGVS IEPT++NL +KSNLSGEFT +N YLV+
Sbjct: 758 LRERISLHGMRNSNCIAIAPTATISNIIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE+ P W++EA S RQKWID
Sbjct: 818 DLKERGLWDEVMVADLKYFDGMLSRIDRIPSDLRAIYATAFEVDPKWLVEAASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNI+++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 878 QAQSLNIFMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTVAHG 928
>gi|291615086|ref|YP_003525243.1| ribonucleoside-diphosphate reductase, subunit alpha [Sideroxydans
lithotrophicus ES-1]
gi|291585198|gb|ADE12856.1| ribonucleoside-diphosphate reductase, alpha subunit [Sideroxydans
lithotrophicus ES-1]
Length = 946
Score = 1091 bits (2821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/758 (68%), Positives = 619/758 (81%), Gaps = 19/758 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP YS VTARLL+ I E+ G ++ Q D+ +Y EYF KFI +GI+ +LLN +L
Sbjct: 199 IEQDPAYSFVTARLLLNNICCEILGGQVSQADMAERYAEYFPKFIKRGIEAELLNEELGH 258
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL RDLQFNYLGL+ LYDRYFLH++G RIE+PQ FFMR+AMGLSLNE NR
Sbjct: 259 FDLDRLAGALDSSRDLQFNYLGLQTLYDRYFLHVDGQRIELPQAFFMRVAMGLSLNEINR 318
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY LLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 319 EERAIEFYRLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKENALLSK 378
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 379 FAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 438
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN + W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 439 HLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFG 498
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE++Y YE + G++KLFKK+ A LWRK+L+MLFETGHPWITFKD CNIRSPQQH
Sbjct: 499 AEFEKAYTAYEAKVASGELKLFKKVPAQSLWRKMLTMLFETGHPWITFKDPCNIRSPQQH 558
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM------KNGKLDPIKLKKTIRIAM 414
VG++HSSNLCTEITLNTS +EI VCNLGS+NL H+ K G++D KLK+T+ AM
Sbjct: 559 VGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLAAHLFPKGHAKAGQIDHDKLKRTVSTAM 618
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH ++IPYSS AI+FAD+SME
Sbjct: 619 RMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHDLRIPYSSDAAIEFADRSMEA 678
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+CYYAY+AST+LA E+GRY+SY GSLWD+GILPQDSL LL ++RG Y++V+MS +L+W
Sbjct: 679 VCYYAYWASTDLAAERGRYASYRGSLWDKGILPQDSLNLLLEQRGG-YVEVDMSSNLDWD 737
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI++ GMRNSNCVAIAPTATISNIIGVSA IEPTY+N+ +KSNLSGEFT IN +LV
Sbjct: 738 ALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIEPTYQNIFVKSNLSGEFTVINDHLV 797
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK GLWDE MIA+LKYFDG+L++I RIP +LR++YATAFE+ P W+IEA S RQKWI
Sbjct: 798 NDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRELYATAFEVEPKWLIEAASRRQKWI 857
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLNIY+S SG+KLDETYKLAWLRGLKTTYYLR++ A A+KS G +L+
Sbjct: 858 DQAQSLNIYMSGVSGRKLDETYKLAWLRGLKTTYYLRALGATSAEKSTSRAG----SLNA 913
Query: 715 ISIKGYNKNLQE---IKNNKKCLINSEINDVNECESCQ 749
+S G + ++ K C I D ECE+CQ
Sbjct: 914 VSSGGGAGEMSASPVVEEAKFCSI-----DNPECEACQ 946
>gi|33598410|ref|NP_886053.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
parapertussis 12822]
gi|33603350|ref|NP_890910.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
bronchiseptica RB50]
gi|410474442|ref|YP_006897723.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
parapertussis Bpp5]
gi|427816360|ref|ZP_18983424.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica 1289]
gi|33574539|emb|CAE39186.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
parapertussis]
gi|33577474|emb|CAE34739.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica RB50]
gi|408444552|emb|CCJ51310.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
parapertussis Bpp5]
gi|410567360|emb|CCN24931.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica 1289]
Length = 975
Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/763 (66%), Positives = 619/763 (81%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q D+ +Y EYF FI +GI+ LL+ KLAE
Sbjct: 218 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAE 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L ++ AL RDLQF YLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 278 YDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 338 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 398 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 458 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y YE + G++KLFKK+ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ EI VCNLGS+NL HMK NG +LD KLK+TI +AMR
Sbjct: 578 VGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVAMR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN RHRPVG+GIMGFQDCLH+M++PY+S++AI FAD+SME +
Sbjct: 638 MLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAV 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ELA+E+GRY SY+GSLW +GILPQD+L +L +ERG + V+ S SL+W
Sbjct: 698 CYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGN-VDVDDSSSLDWDT 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 757 LRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LRK+YATAFE+ P+W++E S RQKWID
Sbjct: 817 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY+S SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 877 QAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGG----ELNAV 932
Query: 716 SIKGYNKN--------LQEIK-NNKKCLINSEINDVNECESCQ 749
S + L E + C + ECE+CQ
Sbjct: 933 SAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975
>gi|390576355|ref|ZP_10256425.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
terrae BS001]
gi|420255797|ref|ZP_14758673.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. BT03]
gi|389931694|gb|EIM93752.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
terrae BS001]
gi|398044510|gb|EJL37328.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
sp. BT03]
Length = 997
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/711 (69%), Positives = 601/711 (84%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ E+ Q ++ +Y EYF FI +G++ +LL+ KL +
Sbjct: 216 IEKDPAYSQVTARILLHTIRREILEDEVTQAEMGERYAEYFPLFIKRGVNAELLDEKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH +G+RIEMPQ FFMR+AMGLSLNE +R
Sbjct: 276 FDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHSDGVRIEMPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 336 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP PDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHEGGDWTLFSPSTCPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 ADFEKAYTAYEEKAARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K LD KLK+TI +AMR
Sbjct: 576 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLKEQADGTVVLDHDKLKRTISVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH+++ PY+S+EA++FAD+SME +
Sbjct: 636 MLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHVLRTPYASQEAVEFADRSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELAEE+GRY++Y GSLWD+GILPQD+LKLLE+ RG Y++V+ SES++W
Sbjct: 696 CYYAYWASTELAEERGRYATYRGSLWDRGILPQDTLKLLEEARGG-YIEVDSSESMDWAS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 755 LRSRISTHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+A+LKYFDG+LS+I R+P DLR IYATAFE+ W++EA S RQKWID
Sbjct: 815 DLKARGLWDEVMVADLKYFDGSLSRIDRVPGDLRAIYATAFEVDATWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A + +KS G
Sbjct: 875 QAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTVAHG 925
>gi|410421826|ref|YP_006902275.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
bronchiseptica MO149]
gi|427819864|ref|ZP_18986927.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica D445]
gi|427825137|ref|ZP_18992199.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica Bbr77]
gi|408449121|emb|CCJ60808.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica MO149]
gi|410570864|emb|CCN19065.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica D445]
gi|410590402|emb|CCN05489.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica Bbr77]
Length = 975
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/763 (66%), Positives = 619/763 (81%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q D+ +Y EYF FI +GI+ LL+ KLAE
Sbjct: 218 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAE 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L ++ AL RDLQF YLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 278 YDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 338 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 398 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 458 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y YE + G++KLFKK+ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ EI VCNLGS+NL HMK NG +LD KLK+TI +AMR
Sbjct: 578 VGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNANGGYELDHDKLKRTIGVAMR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN RHRPVG+GIMGFQDCLH+M++PY+S++AI FAD+SME +
Sbjct: 638 MLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAV 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ELA+E+GRY SY+GSLW +GILPQD+L +L +ERG + V+ S SL+W
Sbjct: 698 CYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGN-VDVDDSSSLDWDT 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 757 LRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LRK+YATAFE+ P+W++E S RQKWID
Sbjct: 817 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY+S SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 877 QAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGG----ELNAV 932
Query: 716 SIKGYNKN--------LQEIK-NNKKCLINSEINDVNECESCQ 749
S + L E + C + ECE+CQ
Sbjct: 933 SAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975
>gi|412341327|ref|YP_006970082.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
bronchiseptica 253]
gi|408771161|emb|CCJ55960.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
bronchiseptica 253]
Length = 975
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/763 (66%), Positives = 618/763 (80%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q D+ +Y EYF FI +GI+ LL+ KLAE
Sbjct: 218 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAE 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L ++ AL RDLQF YLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 278 YDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 338 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 398 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 458 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y YE + G++KLFKK A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEQAYAGYEAKVASGELKLFKKTPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ EI VCNLGS+NL HMK NG +LD KLK+TI +AMR
Sbjct: 578 VGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVAMR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN RHRPVG+GIMGFQDCLH+M++PY+S++AI FAD+SME +
Sbjct: 638 MLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAV 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ELA+E+GRY SY+GSLW +GILPQD+L +L +ERG + V+ S SL+W
Sbjct: 698 CYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGN-VDVDDSSSLDWDT 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 757 LRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LRK+YATAFE+ P+W++E S RQKWID
Sbjct: 817 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY+S SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 877 QAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGG----ELNAV 932
Query: 716 SIKGYNKN--------LQEIK-NNKKCLINSEINDVNECESCQ 749
S + L E + C + ECE+CQ
Sbjct: 933 SAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975
>gi|394987970|ref|ZP_10380808.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfuricella
denitrificans skB26]
gi|393792428|dbj|GAB70447.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfuricella
denitrificans skB26]
Length = 947
Score = 1090 bits (2818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/749 (66%), Positives = 621/749 (82%), Gaps = 15/749 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P YS VTARLL+ I+KEV G+ Q ++ +Y EYF FI +GI+ + L+ +LA+
Sbjct: 214 IEKEPAYSYVTARLLLDTIRKEVLGETTSQANMETRYAEYFPDFIKQGIEAERLDERLAQ 273
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L + AL+ RDLQF YL L+ LYDRYFLHI+ RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 274 FDLKRMGAALVASRDLQFGYLSLQTLYDRYFLHIDERRIELPQAFFMRVAMGLSLNEIDR 333
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E+IKENALLSK
Sbjct: 334 ETRAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEAIKENALLSK 393
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDW++VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 394 FAGGLGNDWSRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 453
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN W+PDLFMKRV++ WTLFSP DVPDLH+ FG
Sbjct: 454 HLDIEEFMELRKNTGDDRRRTHDMNTCNWIPDLFMKRVMEAGDWTLFSPNDVPDLHDLFG 513
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y YE + + G+IKL KK+ AL LWRK+L+MLFETGHPWITFKD CNIRSPQQH
Sbjct: 514 KAFEEAYTAYEAKAERGEIKLHKKVPALQLWRKMLTMLFETGHPWITFKDPCNIRSPQQH 573
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG +HSSNLCTEITLNT+++EI VCNLGS+NL H+K+G LD KL++T+R AMRMLDNV
Sbjct: 574 VGTVHSSNLCTEITLNTNEHEIAVCNLGSVNLVAHLKDGVLDTAKLQRTVRTAMRMLDNV 633
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV KA+ +NL+HRPVG+GIMGFQDCLH +++PY+S+ A++FAD+SME + YYAY
Sbjct: 634 IDINYYAVAKARNANLKHRPVGMGIMGFQDCLHALRVPYASQPAVEFADRSMEAVAYYAY 693
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAEE+GRY+++ GSLWD+GILP +S L+++ RG YL+++ S +L+W+ LR RI
Sbjct: 694 MASTELAEERGRYATFTGSLWDRGILPHESNALVKEARGG-YLELDESVTLDWEALRARI 752
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++FGMRNSNC+AIAPTATI+NI+GVSASIEPTY+NL++KSNLSGEFT +N YLV++LK
Sbjct: 753 QQFGMRNSNCLAIAPTATIANIVGVSASIEPTYQNLYVKSNLSGEFTVVNDYLVEDLKAA 812
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE MI++LKYFDG L++I RIP +LR++YATAFE+ P+W+IEA + RQKWIDQ+QSL
Sbjct: 813 GLWDEVMISDLKYFDGTLAKIDRIPAELRQLYATAFEVDPSWLIEAAARRQKWIDQAQSL 872
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
NIYI + SGKKLDETYKLAWLRGLKTTYYLRS+ A +A+KS + G L+ + + G
Sbjct: 873 NIYIGSPSGKKLDETYKLAWLRGLKTTYYLRSLGATHAEKSTSKAGA----LNAVPVDG- 927
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + C I D ECE+CQ
Sbjct: 928 ----GIVAETQFCSI-----DNPECEACQ 947
>gi|421485727|ref|ZP_15933282.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
piechaudii HLE]
gi|400196039|gb|EJO29020.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
piechaudii HLE]
Length = 976
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/759 (66%), Positives = 621/759 (81%), Gaps = 11/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y EYF FI +GI+ LL+P+LA
Sbjct: 219 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQDGMGARYAEYFPTFIARGIEGGLLSPELAS 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L +AL +RDLQF YLGL+ LYDRYFLHI G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 279 YDLTKLGHALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALREADR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 ETRAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 399 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K G
Sbjct: 459 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKVG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+Y+ YEN+ G++KL+KK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 RAFEEAYVGYENRVASGELKLYKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK +LD K+K+T+ IAMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHDKIKRTVSIAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SN RHRPVG+GIMGFQDCL +M++PY+S+ A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ LAEE+GRY SY+GSLW +GILPQD+LK+L ERG +++V+ S SL+W
Sbjct: 699 CYHAYFASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGG-HVEVDESSSLDWDT 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P+W++E S RQKWID
Sbjct: 818 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLNIY+S SGKKLD+TYKLAWLRGLKTTYYLR++ A A+KS G + +
Sbjct: 878 QAQSLNIYMSGASGKKLDDTYKLAWLRGLKTTYYLRTLGATSAEKSTGRGGELNAVTAGG 937
Query: 712 LDEISIKGYNKNLQEIKN-NKKCLINSEINDVNECESCQ 749
+ G L E + C + ECE+CQ
Sbjct: 938 QSTAAAVGAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976
>gi|350545920|ref|ZP_08915360.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Candidatus Burkholderia kirkii UZHbot1]
gi|350526296|emb|CCD40808.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Candidatus Burkholderia kirkii UZHbot1]
Length = 1013
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/711 (69%), Positives = 597/711 (83%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTAR+L++ I++E+ E+ Q ++ +Y EYF FI +G++ LL+ KL +
Sbjct: 225 IEKDPAYSQVTARILLHTIRREILEGEVPQAEMGERYAEYFPLFIKRGVEAGLLDDKLQQ 284
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF YLGL+ LYDRYFLH++G RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 285 FDLKRLGTALDTNRDLQFGYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLSLNEIDR 344
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 345 EARAIEFYQVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSK 404
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 405 FAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 464
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+ FG
Sbjct: 465 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDLFG 524
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y YE + G+IKLFKKI A LWRK+L MLFETGHPWITFKD CN+RSPQQH
Sbjct: 525 ADFEKAYTAYEEKAARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQH 584
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-----KNGKLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+ LD KLK+TI +AMR
Sbjct: 585 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHIVEQADSTYALDHAKLKRTISVAMR 644
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNLRHRPVG+GIMGFQDCL++++ PY+S EA++FAD+SME +
Sbjct: 645 MLDNVIDINYYAVPKARNSNLRHRPVGMGIMGFQDCLYLLRTPYASAEAVEFADRSMEAV 704
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAYYASTELAEE+GRYSSY GSLWD+GILPQDSLKLL + RG Y++V+ S S++W
Sbjct: 705 CYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSLKLLAEARGG-YVEVDTSASMDWPA 763
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RI +GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 764 LRSRISTYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 823
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE M+++LKYFDG LS+I RIP DLR IYATAFE+ P W++EA + RQKWID
Sbjct: 824 DLKARGLWDEVMVSDLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAAAHRQKWID 883
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLDE YKLAW+RGLKTTYYLR+++A + +KS G
Sbjct: 884 QAQSLNIYMAGASGKKLDEVYKLAWIRGLKTTYYLRTMAATHVEKSTVAHG 934
>gi|149927166|ref|ZP_01915423.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
MED105]
gi|149824105|gb|EDM83326.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
MED105]
Length = 969
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/765 (66%), Positives = 628/765 (82%), Gaps = 18/765 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P Y+ VT+RLL++ I++E+ G+EI Q ++ Y EYF +FI KGI LL+ +LA+
Sbjct: 207 IENEPSYTLVTSRLLLHTIRREIIGREIAQDEMAQVYPEYFPQFIKKGIAAGLLDNRLAQ 266
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F++ L AL ERDLQF+YLGL+ LYDRYFLH+EG RIEMPQ F+MR+AMGL+LNE +R
Sbjct: 267 FDMKKLGAALKYERDLQFDYLGLQTLYDRYFLHVEGTRIEMPQAFYMRVAMGLALNEVDR 326
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LS+F+FM STPTLFNSGTIRSQLSSCYL+T+ DDL I+E IKENALLSK
Sbjct: 327 EARAIEFYEVLSTFDFMSSTPTLFNSGTIRSQLSSCYLTTIGDDLDDIYEGIKENALLSK 386
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 387 FAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 446
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+ +G
Sbjct: 447 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGNWTLFSPSDCPDLHDLYG 506
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G +KLFK + A LWRKILSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 507 KAFEKAYVGYEEKAARGDLKLFKTVEAAKLWRKILSMLFETGHPWITFKDPCNIRSPQQH 566
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT++NEI VCNLGS+NLT H+K NG+ LD KL+KT+ +AMR
Sbjct: 567 VGVVHSSNLCTEITLNTNENEIAVCNLGSVNLTRHLKPADNGELVLDHEKLQKTVGVAMR 626
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNLRHRPVG+G+MGFQD LH+M+ PY+S++A++FAD+SME I
Sbjct: 627 MLDNVIDINYYAVAKARNSNLRHRPVGMGMMGFQDALHMMRKPYASRDAVEFADESMEAI 686
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY ASTELA E+G YS++ GSLWD+GI+P DSLKLLE+ERG Y++V+ S ++W
Sbjct: 687 CYYAYEASTELAAERGAYSTFKGSLWDKGIMPLDSLKLLEEERGG-YVEVDTSSRMDWDA 745
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIKK GMRNSNCVAIAPTATISNIIGV+ASIEPT++NL++KSNLSGEFT +N +LV+
Sbjct: 746 LRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPTFQNLYVKSNLSGEFTIVNEHLVR 805
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK+ G+WDE MI++LKYFDG++ +I RIP+DL+++YATAFE+ P W++EA + RQKWID
Sbjct: 806 DLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLYATAFEMDPRWLVEAAARRQKWID 865
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLD- 713
Q QSLNIY++ SGK+LD+TYKLAW+RGLKTTYYLR+I A +A+KS G ++SVN +
Sbjct: 866 QGQSLNIYMAGVSGKRLDDTYKLAWIRGLKTTYYLRTIGATHAEKSTLAGGELNSVNAEG 925
Query: 714 -------EISIKGYNKNL--QEIKNNKKCLINSEINDVNECESCQ 749
G NL QEI+ K C + +ECE+CQ
Sbjct: 926 GASAAFTSAPATGLVPNLPEQEIE-GKVCTMRPGDAGFDECEACQ 969
>gi|33593915|ref|NP_881559.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
pertussis Tohama I]
gi|384205220|ref|YP_005590959.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
pertussis CS]
gi|408416636|ref|YP_006627343.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
pertussis 18323]
gi|33563989|emb|CAE43254.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
pertussis Tohama I]
gi|332383334|gb|AEE68181.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
pertussis CS]
gi|401778806|emb|CCJ64261.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
pertussis 18323]
Length = 975
Score = 1087 bits (2810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/763 (66%), Positives = 618/763 (80%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q D+ +Y EYF FI +GI+ LL+ KLAE
Sbjct: 218 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAE 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L ++ AL RDLQF YLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 278 YDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 338 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 398 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 458 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y YE + G++KLFKK+ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ EI VCNLGS+NL HMK NG +L+ KLK+TI +AMR
Sbjct: 578 VGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNANGGYELNHDKLKRTIGVAMR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN RHRPVG+GIMGFQDCLH+M++PY+S++AI FAD+SME +
Sbjct: 638 MLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAV 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ELA+E+GRY SY+GSLW +GILPQD+L +L +ERG + V+ S SL+W
Sbjct: 698 CYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGN-VDVDDSSSLDWDT 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+RIK+ GMRNSNC+AIAPTATISNIIG SA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 757 LRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLYVKSNLSGEFTVVNDYLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LRK+YATAFE+ P+W++E S RQKWID
Sbjct: 817 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY+S SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 877 QAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGG----ELNAV 932
Query: 716 SIKGYNKN--------LQEIK-NNKKCLINSEINDVNECESCQ 749
S + L E + C + ECE+CQ
Sbjct: 933 SAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975
>gi|163854888|ref|YP_001629186.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
petrii DSM 12804]
gi|163258616|emb|CAP40915.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
petrii]
Length = 974
Score = 1085 bits (2807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/758 (66%), Positives = 617/758 (81%), Gaps = 10/758 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y EYF FI +GI+ LL+ KLAE
Sbjct: 218 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQAGMATRYAEYFPTFIQRGIEGGLLDAKLAE 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ + AL RDLQF YLGL+ LYDRYFLHI G RIE+PQ FFMR+AMGL+L ES+R
Sbjct: 278 YDLARVGAALDARRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRESDR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 338 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 398 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 458 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G++KLFKK+ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 KAFEQAYLGYEAKVASGELKLFKKMPAISLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL HMK +LD KLK+T+ IAMR
Sbjct: 578 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHMKPAAAGGFELDHDKLKRTVGIAMR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAVKKAK SN RHRPVG+GIMGFQDCL +M++PY+S+ A++FAD+SME +
Sbjct: 638 MLDNVIDINYYAVKKAKDSNERHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAV 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ELA+E+GRY SY+GSLW +GILPQD+L +L ERG +++V+ S +L+W
Sbjct: 698 CYHAYWASSELAQERGRYPSYEGSLWSRGILPQDTLAMLRDERGG-HVEVDESSTLDWNA 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 757 LRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P W++E S RQKWID
Sbjct: 817 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPRWLVECASRRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS---NFEMGIDSVNL 712
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS E+ S
Sbjct: 877 QAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGGELNAVSAGQ 936
Query: 713 DEISIKGYNKNLQEIKN-NKKCLINSEINDVNECESCQ 749
++ NL E + C + ECE+CQ
Sbjct: 937 AATAVTAAAPNLPEPEVLGAVCTMRPGDPGFEECEACQ 974
>gi|187479452|ref|YP_787477.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
avium 197N]
gi|115424039|emb|CAJ50592.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella avium
197N]
Length = 970
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/759 (66%), Positives = 617/759 (81%), Gaps = 15/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y YF FI +GI+ LL+ KLAE
Sbjct: 217 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQASMAERYATYFPTFIQRGIEAGLLDAKLAE 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L ++ AL RDLQF YLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+L ES+R
Sbjct: 277 FDLERIARALNANRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALRESDR 336
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 337 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 396
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 397 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 456
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 457 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVVENGDWTLFSPSDCPDLHDKYG 516
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y+ YE + G++KLFKK+ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 517 RAFEQAYLGYEAKAASGELKLFKKMPAISLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 576
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
+G++HSSNLCTEITLNT+++EI VCNLGS+NL HMK NG +LD K+K T+ IAMR
Sbjct: 577 IGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPSANGGYELDHDKIKHTVGIAMR 636
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SNLRHRPVGLGIMGFQDCLH+M++PY+S+ AI+FAD+SME +
Sbjct: 637 MLDNVIDINYYAVEKARNSNLRHRPVGLGIMGFQDCLHMMRVPYASQAAIEFADRSMEAV 696
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY AY+AS+ LAEE+GRY SY+GSLW +GILPQDS+ +L ERG + V+ S SL+W
Sbjct: 697 CYQAYWASSTLAEERGRYPSYEGSLWSRGILPQDSIAMLRDERGGN-VDVDESSSLDWDT 755
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 756 LRARIKAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 815
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P+W++E + RQKWID
Sbjct: 816 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPTELRELYATAFEVEPSWLVECAARRQKWID 875
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 876 QAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTMGATSAEKSTGRGG----ELNAV 931
Query: 716 SIKGYNKNLQEIKNNKK-----CLINSEINDVNECESCQ 749
S ++ + + + C + ECE+CQ
Sbjct: 932 SAGNHSASAAPVLPEPEVVGAACTMRPGDPGFEECEACQ 970
>gi|452127278|ref|ZP_21939861.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
holmesii F627]
gi|452130649|ref|ZP_21943221.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
holmesii H558]
gi|451920574|gb|EMD70720.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
holmesii H558]
gi|451922373|gb|EMD72518.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
holmesii F627]
Length = 975
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/763 (65%), Positives = 621/763 (81%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q D+ +Y +YF FI +GI+ LL+ KLAE
Sbjct: 218 VEKDPAYSQVTARLLLHTIRKEVLGQEVSQADMGQRYADYFPTFIQRGIEAGLLDAKLAE 277
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ ++ AL RDL+F YLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 278 FDLARIARALDASRDLKFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADR 337
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 338 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 397
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 398 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 457
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PD+FMKRV++ WTLFSP D PDLH+K+G
Sbjct: 458 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDMFMKRVMEGGDWTLFSPSDCPDLHDKYG 517
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+EFE +Y+ YE + G++KLFKK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 518 REFERAYLGYEAKAASGELKLFKKMPALSLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 577
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK NG +LD K+K+T+ IAMR
Sbjct: 578 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPTANGSFELDHDKIKRTVSIAMR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SN+RHRPVG+GIMGFQDCLH+M++PY+S+ AI+FAD+SME +
Sbjct: 638 MLDNVIDINYYAVEKARNSNMRHRPVGMGIMGFQDCLHMMRVPYASQAAIEFADRSMETV 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY AY+AS+ LAEE+GRY SY+GSLW +GILPQDS+ +L +ERG + V+ S +L+W
Sbjct: 698 CYQAYWASSTLAEERGRYQSYEGSLWSRGILPQDSIAMLREERGGN-VDVDESSALDWNT 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 757 LRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P+W++E + RQKWID
Sbjct: 817 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPAELRELYATAFEVEPSWLVECAARRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 877 QAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTMGATSAEKSTGRGG----ELNAV 932
Query: 716 SIKGYNKNLQEIKN---------NKKCLINSEINDVNECESCQ 749
S +N + C + ECE+CQ
Sbjct: 933 SAGNHNASASASAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975
>gi|339483522|ref|YP_004695308.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosomonas
sp. Is79A3]
gi|338805667|gb|AEJ01909.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
sp. Is79A3]
Length = 954
Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/752 (67%), Positives = 619/752 (82%), Gaps = 13/752 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YS VTARLL+ ++ EV G+E+ Q + +YK+YF FI +GI+ LL+ +LA+
Sbjct: 213 IEKDPAYSYVTARLLLNNMRYEVLGEEVSQQMMQAQYKDYFPAFIKRGIEADLLDERLAQ 272
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ L RDLQF+YLGL+ LYDRYFLHI+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 273 FDLTRLAEVLDAARDLQFDYLGLQTLYDRYFLHIKENRIELPQAFFMRVAMGLALNEIDR 332
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY++LSSF+FM STPTLFNSGT RSQLSSCYL+TVPDDL GI+E+IKENALL+K
Sbjct: 333 EARAIEFYHVLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVPDDLDGIYEAIKENALLAK 392
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR++G+ IKGTNG+SQGV+PFLKVV+D AVAVNQGGKRKGA+CAYLE W
Sbjct: 393 YAGGLGNDWTAVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLECW 452
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV+ S WTLFSP DVPDLH KFG
Sbjct: 453 HLDIEEFLELRKNTGDDRRRTHDMNTATWIPDLFMKRVMDGSDWTLFSPSDVPDLHEKFG 512
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
++FE++Y+ YE + + G+++L+KKI A+ LWRK+LSMLFETGHPWITFKD CNIRSPQ H
Sbjct: 513 QQFEQAYLAYEAKIERGELELYKKIPAVQLWRKMLSMLFETGHPWITFKDPCNIRSPQNH 572
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
+G++HSSNLCTEITLNT+ EI VCNLGS+NL H+K+G LD KLK+T+ IAMRMLDNV
Sbjct: 573 IGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLVAHLKDGALDLDKLKRTVSIAMRMLDNV 632
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+YAV KA+ +NL+HRPVGLGIMGFQDCLH + IPYSS A++FAD+SME + Y AY
Sbjct: 633 IDINFYAVAKARNANLKHRPVGLGIMGFQDCLHQLGIPYSSDAAVEFADRSMEAVAYQAY 692
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELAEE+G YSSY GSLWD+GILP D+L++L KERG +++ ++S +L+W LR RI
Sbjct: 693 WASTELAEERGCYSSYKGSLWDRGILPHDTLEILRKERGG-FVEADLSTTLDWDALRQRI 751
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNC+AIAPTATISNIIGVSASIEPTY+NL++KSNLSGEFT NR LV +LKK
Sbjct: 752 KNHGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTITNRSLVDDLKKL 811
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MIA+LKYFDG +S+I RIP+ +R +YATAFE+ P W+IEAG+ RQKWIDQSQSL
Sbjct: 812 NLWDEVMIADLKYFDGAISKIDRIPESIRTLYATAFEMEPCWLIEAGARRQKWIDQSQSL 871
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIKG 719
NIY++ SGKKLD+TYKLAWLRGLKTTYYLRS+ A A+KS G +++V D G
Sbjct: 872 NIYMAGVSGKKLDDTYKLAWLRGLKTTYYLRSMGATAAEKSTVRAGSLNAVPAD----GG 927
Query: 720 YNKNLQEIK--NNKKCLINSEINDVNECESCQ 749
K E+ K C I+ E CESCQ
Sbjct: 928 MAKVAMEVSAVEIKYCAIDDE-----SCESCQ 954
>gi|293603287|ref|ZP_06685716.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
piechaudii ATCC 43553]
gi|292818322|gb|EFF77374.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
piechaudii ATCC 43553]
Length = 976
Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/759 (65%), Positives = 619/759 (81%), Gaps = 11/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y EYF FI +GI+ LL+P+LA
Sbjct: 219 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQDGMVARYAEYFPTFIARGIEGGLLSPELAN 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL +RDLQF YLGL+ LYDRYFLHI G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 279 YDLTRLGKALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALREADR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 ETRAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 399 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 459 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+YI YE + G++KL+KK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 RAFEEAYIGYEKRVASGELKLYKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK +LD K+K+T+ IAMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDLDKIKRTVSIAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SN RHRPVG+GIMGFQDCL +M++PY+S+ A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ LAEE+GRY SY+GSLW +GILPQD+LK+L ERG +++V+ S +L+W
Sbjct: 699 CYHAYFASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGG-HVEVDESSTLDWDT 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNCVAIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P+W++E S RQKWID
Sbjct: 818 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G + +
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTYYLRTLGATSAEKSTGRGGELNAVTAGG 937
Query: 712 LDEISIKGYNKNLQEIKN-NKKCLINSEINDVNECESCQ 749
+ G L E + C + ECE+CQ
Sbjct: 938 QSTAAAVGAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976
>gi|311103858|ref|YP_003976711.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
xylosoxidans A8]
gi|310758547|gb|ADP13996.1| ribonucleoside-diphosphate reductase, alpha subunit [Achromobacter
xylosoxidans A8]
Length = 976
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/763 (65%), Positives = 617/763 (80%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y EYF FI +GI+ LL+P LA
Sbjct: 219 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLAS 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L +AL +RDLQF YLGL+ LYDRYFLHI G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 279 YDLTKLGHALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALREADR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 ETRAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 399 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 459 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+Y+ YE + G++KLFKK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 RAFEEAYVGYEARVASGELKLFKKMPALNLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK +LD K+K+T+ IAMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHDKIKRTVSIAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN RHRPVG+GIMGFQDCL +M++PY+S+ A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQSAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ LAEE+GRY SY+GSLW +GILPQD+LK+L ERG +++V+ S +L+W
Sbjct: 699 CYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGG-HVEVDESSTLDWDT 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIKK GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKKHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR +YATAFE+ P+W++E S RQKWID
Sbjct: 818 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRDLYATAFEVEPSWLVECASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRGG----ELNAV 933
Query: 716 SIKGYNKNLQEIKN---------NKKCLINSEINDVNECESCQ 749
S G + + C + ECE+CQ
Sbjct: 934 SAGGQSTSAAVAAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976
>gi|325983071|ref|YP_004295473.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosomonas
sp. AL212]
gi|325532590|gb|ADZ27311.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
sp. AL212]
Length = 954
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/752 (67%), Positives = 616/752 (81%), Gaps = 13/752 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YS VTARLL+ ++ EV G E+ Q + Y+EYF FI +GI+ LL+ +LA+
Sbjct: 213 IEKDPAYSYVTARLLLDNVRYEVLGAEVSQQAMKSHYQEYFPAFIKRGIEADLLDQRLAQ 272
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ LS AL +RDLQF+YLGL+ LYDRYFLHI+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 273 FDLARLSEALDADRDLQFDYLGLQTLYDRYFLHIKEQRIELPQAFFMRVAMGLALNEIDR 332
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT RSQLSSCYL+TVPDDL GI+ESIKENALL+K
Sbjct: 333 EARAIEFYQVLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVPDDLDGIYESIKENALLAK 392
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR++G+ IKGTNG+SQGV+PFLKVV+D AVAVNQGGKRKGA+CAYLE W
Sbjct: 393 YAGGLGNDWTAVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLECW 452
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP DVPDLH KFG
Sbjct: 453 HLDIEEFLELRKNTGDDRRRTHDMNTATWIPDLFMKRVMEGGDWTLFSPSDVPDLHEKFG 512
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
++FE++Y+ YE + + G+++L+KKI A+ LWRK+LSMLFETGHPWITFKD CN+RSPQ H
Sbjct: 513 QQFEQAYLGYEARIERGELELYKKIPAVQLWRKMLSMLFETGHPWITFKDPCNVRSPQNH 572
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
+G++HSSNLCTEITLNT+ EI VCNLGS+NL H+K+G LD KLK+TI + MRMLDNV
Sbjct: 573 IGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLVAHLKDGALDLDKLKRTIHVVMRMLDNV 632
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+YAV KA+ +NL+HRPVGLGIMGFQDCLH + IPY S A++FAD+SME + Y AY
Sbjct: 633 IDINFYAVAKARNANLKHRPVGLGIMGFQDCLHQLGIPYGSPAAVEFADRSMEAVAYQAY 692
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G YS+Y GSLWD+GILP D+L +L++ERG Y++ ++S +L+W LR RI
Sbjct: 693 WASTELAQERGCYSTYKGSLWDRGILPHDTLTVLQQERGG-YVEADLSATLDWDALRQRI 751
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNC+AIAPTATISNI+GVSASIEPTY+NL++KSNLSGEFT NR LV +LKK
Sbjct: 752 KLHGMRNSNCLAIAPTATISNIVGVSASIEPTYQNLYVKSNLSGEFTITNRSLVNDLKKL 811
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MI++LKYFDG +S+I RIPD++R +YATAFE+ P W+IEAG+ RQKWIDQSQSL
Sbjct: 812 NLWDEVMISDLKYFDGAISKIDRIPDNIRTLYATAFEMDPLWLIEAGARRQKWIDQSQSL 871
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIKG 719
NIY+ SGKKLDETYKLAWLRGLKTTYYLRS+ A A+KS G +++V D G
Sbjct: 872 NIYMGGVSGKKLDETYKLAWLRGLKTTYYLRSMGATAAEKSTVRAGSLNAVPAD----GG 927
Query: 720 YNKNLQEIKNN--KKCLINSEINDVNECESCQ 749
K E+ K C I+ E CESCQ
Sbjct: 928 IVKAAVEVSTVEIKYCAIDDE-----SCESCQ 954
>gi|422322458|ref|ZP_16403499.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
xylosoxidans C54]
gi|317402621|gb|EFV83181.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
xylosoxidans C54]
Length = 976
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/763 (65%), Positives = 615/763 (80%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y EYF FI +GI+ LL+P LA
Sbjct: 219 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLAS 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL +RDLQF YLGL+ LYDRYFLHI G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 279 YDLTKLGKALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRETDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 399 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 459 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y+ YE + G +KLFKK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 KAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK +LD K+K+T+ IAMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHEKIKRTVSIAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN RHRPVG+GIMGFQDCL +M++PY+S+ A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ LAEE+GRY SY+GSLW +GILPQD+LK+L ERG +++V+ S +L+W
Sbjct: 699 CYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGG-HVEVDESSTLDWDA 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P+W++E S RQKWID
Sbjct: 818 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRGG----ELNAV 933
Query: 716 SIKGYNKNLQEIKN---------NKKCLINSEINDVNECESCQ 749
S G + C + ECE+CQ
Sbjct: 934 SAGGTSAAAPVSAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976
>gi|359795994|ref|ZP_09298605.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
arsenitoxydans SY8]
gi|359366037|gb|EHK67723.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
arsenitoxydans SY8]
Length = 976
Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/759 (65%), Positives = 616/759 (81%), Gaps = 11/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y EYF FI +GI+ LL+P+LA
Sbjct: 219 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQDGMSTRYAEYFPTFIARGIEGGLLSPELAN 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL +RDLQF YLGL+ LYDRYFLHI G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 279 YDLTKLGLALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRETDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 399 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 459 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+Y+ YE + G +KLFKK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 RAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK +LD K+K+T+ IAMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHDKIKRTVSIAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN RHRPVG+GIMGFQDCL +M++PY+S+ A++FAD+SME +
Sbjct: 639 MLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ LA+E+GRY SY+GSLW +GILPQD+LK+L +ERG ++ V+ S +L+W
Sbjct: 699 CYHAYFASSLLAQERGRYQSYEGSLWSRGILPQDTLKMLREERGG-HVDVDESSTLDWDT 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RIK+ GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P W++E S RQKWID
Sbjct: 818 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPRWLVECASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G +++V+
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTYYLRTLGATSAEKSTGRGGELNAVSAGT 937
Query: 715 ISIKGYNKNLQEIKN----NKKCLINSEINDVNECESCQ 749
S + C + ECE+CQ
Sbjct: 938 PSTASAVAAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976
>gi|171057073|ref|YP_001789422.1| ribonucleotide-diphosphate reductase subunit alpha [Leptothrix
cholodnii SP-6]
gi|170774518|gb|ACB32657.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptothrix
cholodnii SP-6]
Length = 958
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/755 (65%), Positives = 612/755 (81%), Gaps = 14/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YS+VTARLLM+ I+++V G+E+ Q ++ +Y +YF FI KG+D +LL+ ++A+
Sbjct: 212 IEKDPSYSRVTARLLMHTIRRDVLGEEVTQAEMAARYADYFPAFIKKGVDAELLDERMAQ 271
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL ERDL F+YLGL+ LYDRYFLHI RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 272 FDLARLGAALKAERDLNFDYLGLQTLYDRYFLHIRKQRIEMPQAFFMRVAMGLALNEIDR 331
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LS+F+FM STPTLFN+GT RSQLSSCYL+TVPDDL GI+++IK+NALLSK
Sbjct: 332 EARAIEFYEVLSAFDFMSSTPTLFNAGTRRSQLSSCYLTTVPDDLEGIYDAIKDNALLSK 391
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 392 FAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 451
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP + PDLH+ FG
Sbjct: 452 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPANCPDLHDLFG 511
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE +Y YE + G+I FK++ A+ LWRKILSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 512 TAFEAAYTAYEARADRGEITFFKRVRAVDLWRKILSMLFETGHPWITFKDACNVRSPQQH 571
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+ EI VCNLGS+NL H+K+G++D KL +T+ AMRMLDNV
Sbjct: 572 VGVVHSSNLCTEITLNTNAGEIAVCNLGSVNLAQHVKDGEVDQAKLCRTVTTAMRMLDNV 631
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLGIMGFQD L+ +++PY+S EA++FAD+SME +CY+AY
Sbjct: 632 IDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRVPYASNEAVEFADRSMEAVCYHAY 691
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+GRY++Y GSLWD+GILP DS+ LL ++RG YL V+ +L+W LR RI
Sbjct: 692 WASTELAAERGRYATYRGSLWDRGILPIDSIALLAEQRGG-YLDVDTRTTLDWDALRARI 750
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT +N YLV++LK
Sbjct: 751 AQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVNEYLVRDLKAL 810
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L +I R+P++L+++YATAFE+ W++EA + RQKWIDQ+QSL
Sbjct: 811 GLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWLVEAAARRQKWIDQAQSL 870
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
NIY++ SGKKLDETYKLAWLRGLKTTYYLR++ A +A+KS + G S+N G
Sbjct: 871 NIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMGATHAEKSTVKAG--SMNAVSNGAHGS 928
Query: 721 NKNLQEIKNN------KKCLINSEINDVNECESCQ 749
+ +N K C I D CE+CQ
Sbjct: 929 ASEPAAVSSNEPATDVKFCAI-----DDPSCEACQ 958
>gi|423015517|ref|ZP_17006238.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
xylosoxidans AXX-A]
gi|338781416|gb|EGP45806.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
xylosoxidans AXX-A]
Length = 976
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/763 (65%), Positives = 616/763 (80%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YSQVTARLL++ I+KEV G+E+ Q + +Y EYF FI +GI+ LL+P LA
Sbjct: 219 VEKDPAYSQVTARLLLHTIRKEVLGEEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLAG 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL +RDLQF YLGL+ LYDRYFLHI G RIE+PQ FFMR+AMGL+L E++R
Sbjct: 279 YDLTKLGKALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRETDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 EARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 399 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 459 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+Y+ YE + G +KLFKK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 KAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+++EI VCNLGS+NL HMK +LD K+K+T+ IAMR
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHDKIKRTVSIAMR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV+KA+ SN RHRPVG+GIMGFQDCL +M++PY+S A++FAD SME +
Sbjct: 639 MLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASHAAVEFADTSMEAV 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CY+AY+AS+ LAEE+GRY SY+GSLW +GILPQD+LK+L ERG +++V+ S +L+W
Sbjct: 699 CYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGG-HVEVDESSTLDWDA 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI + GMRNSNC+AIAPTATISNIIGVSA IEPT++NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRARINQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I R+P +LR++YATAFE+ P+W++E S RQKWID
Sbjct: 818 DLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A A+KS G L+ +
Sbjct: 878 QAQSLNIYMAGASGKKLDDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRGG----ELNAV 933
Query: 716 SIKGYNKN--------LQEIKN-NKKCLINSEINDVNECESCQ 749
S G + L E + C + ECE+CQ
Sbjct: 934 SAGGQSTAAPVSAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976
>gi|158341283|ref|YP_001522353.1| ribonucleotide-diphosphate reductase subunit alpha [Acaryochloris
marina MBIC11017]
gi|158311524|gb|ABW33135.1| ribonucleotide-diphosphate reductase, alpha subunit [Acaryochloris
marina MBIC11017]
Length = 960
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/760 (65%), Positives = 622/760 (81%), Gaps = 16/760 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YS+VTARLL++ I++EV G E+ Q ++ +Y EYF FI +GI LL+ KLA+
Sbjct: 206 IEKDPDYSKVTARLLLHRIRQEVLGAEVTQAEMQARYAEYFPHFIQQGIATGLLDEKLAQ 265
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
FNL L + L+ ERDLQF YLGL+ LYDRYFLH E RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 266 FNLQKLGSVLVAERDLQFGYLGLQTLYDRYFLHTEDRRIELPQAFFMRVAMGLALNEIDR 325
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ A +FY++LS F+FM STPTLFNSGT+RSQLSSCYL+TVPD L GI+ +IK+NALLSK
Sbjct: 326 EERAAEFYDILSKFDFMSSTPTLFNSGTVRSQLSSCYLTTVPDALDGIYSAIKDNALLSK 385
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 386 YAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 445
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHD+N A W+PDLFMKRV++ WTLFSP VPDLH+K G
Sbjct: 446 HLDIEEFLELRKNTGDDRRRTHDINTANWIPDLFMKRVMEDGDWTLFSPDIVPDLHDKVG 505
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE +Y+ YE Q G++K FK + A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 506 KEFETAYLAYEQQAAKGELKPFKTVPANTLWRKMLSMLFETGHPWITFKDPCNVRSPQQH 565
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNG--KLDPIKLKKTIRIAMRM 416
+G++HSSNLCTE+TLNT++NEI VCNLGS+NL HM KNG +LD KL+ TI IAMRM
Sbjct: 566 IGMVHSSNLCTEVTLNTNENEIAVCNLGSVNLVNHMVEKNGQMQLDQAKLQHTITIAMRM 625
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVID+NYYAV A+ SNL+HRPVGLGIMGFQDCLH +++PY+S++A+ FAD++ME +C
Sbjct: 626 LDNVIDLNYYAVSTARNSNLKHRPVGLGIMGFQDCLHQLRLPYASQDAVDFADRAMEAVC 685
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYAY+ASTELA+E+GRYS+Y GSLWD+GILPQD+L LL++ RG +++V+ S +++W L
Sbjct: 686 YYAYWASTELAQERGRYSTYKGSLWDRGILPQDTLALLKEVRGG-FVEVDESSTMDWDLL 744
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R+RI + GMRNSNCVAIAPTATI+NIIGVSA IEPTY+NL++KSNLSGEFT +N YLV++
Sbjct: 745 RDRIAQHGMRNSNCVAIAPTATIANIIGVSACIEPTYQNLYVKSNLSGEFTVVNEYLVRD 804
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK + LWDE MIA+LKYFDG+L++I RIP +LR++YATAFE+ PNWI+EA + R KWIDQ
Sbjct: 805 LKVRELWDEVMIADLKYFDGSLAKIDRIPPELRQLYATAFEVEPNWIVEAAARRSKWIDQ 864
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEIS 716
+QSLNIY++ SGKKLD+ YKLAW RGLKTTYYLRS+ A + +KS + +L+ +S
Sbjct: 865 AQSLNIYMAGASGKKLDQIYKLAWQRGLKTTYYLRSLGATHVEKST----APASSLNAVS 920
Query: 717 IKGYNKNLQEIKNNKK-------CLINSEINDVNECESCQ 749
G + + I K C ++ + ++CE+CQ
Sbjct: 921 NNGSSNGIGNILTTSKSENLGQVCSLSPGDANFDDCEACQ 960
>gi|30250347|ref|NP_842417.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
europaea ATCC 19718]
gi|30181142|emb|CAD86335.1| Ribonucleotide reductase large subunit [Nitrosomonas europaea ATCC
19718]
Length = 955
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/749 (65%), Positives = 615/749 (82%), Gaps = 9/749 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P YS VTARLL+ I+ EV G+E+ + +Y EYF +F+ KGI+ LL+ +L +
Sbjct: 216 IEKEPAYSFVTARLLLDNIRYEVLGEEVAHEAMQSRYAEYFPEFVRKGIEAGLLDERLGQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ LS AL +RDLQF YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 276 FDLARLSEALAADRDLQFGYLGLQTLYDRYFLHVSERRIELPQIFFMRVAMGLALNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY+LLS F+FM STPTLFNSGT RSQLSSCYLSTVPD L GI+E+IKENALLSK
Sbjct: 336 EARAIEFYHLLSKFDFMSSTPTLFNSGTRRSQLSSCYLSTVPDSLDGIYEAIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR++G+ IKGTNG+SQGV+PFLKVV+D AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKR+ + WTLFSP D PDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDLFMKRMQEDQEWTLFSPSDTPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FEE+YI YE Q G++ LFK+I A LWRK+L+MLFETGHPWITFKD CNIRSPQ H
Sbjct: 516 RAFEEAYIAYEEQAAQGRLTLFKRIPARQLWRKMLTMLFETGHPWITFKDPCNIRSPQNH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS+ EI VCNLGS+NL H+ +GKLD +LK+T+ AMRMLDNV
Sbjct: 576 VGVVHSSNLCTEITLNTSEKEIAVCNLGSVNLLAHIVDGKLDQARLKQTVTTAMRMLDNV 635
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+YAV KA+ +N RHRPVGLGIMGFQDCLH + I Y+S EA++FAD+SME + Y+ Y
Sbjct: 636 IDINFYAVAKARNANFRHRPVGLGIMGFQDCLHKLGISYASPEAVEFADRSMEAVAYHTY 695
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELAEE+G Y++Y GSLWD+GILPQD+L+LL +ERG +++++ S + +W LR+RI
Sbjct: 696 WASTELAEERGTYATYRGSLWDRGILPQDTLELLREERGG-HVEIDTSSTQDWDALRDRI 754
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+++GMRNSNC+AIAPTATISNIIGVSASIEPTY+NL++KSNLSGEFT +N++LV +LKK+
Sbjct: 755 RQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTVVNQWLVNDLKKQ 814
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MIA+LK++DG +S+I R+P++LR +YATAFE+ P W++EA S RQKWIDQ+QSL
Sbjct: 815 DLWDEVMIADLKHYDGAVSKIDRVPENLRNLYATAFEVDPRWLVEAASRRQKWIDQAQSL 874
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y++ SGKK+DE Y+LAWLRGLKTTYYLR++ A A+KS G ++N + +
Sbjct: 875 NLYMAGASGKKMDELYRLAWLRGLKTTYYLRALGATTAEKSTVHTG--TLNAVPAQHEAH 932
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
NL ++C I D ECE+CQ
Sbjct: 933 AGNLAH-SAPQQCAI-----DNPECEACQ 955
>gi|388566435|ref|ZP_10152880.1| ribonucleotide-diphosphate reductase subunit alpha [Hydrogenophaga
sp. PBC]
gi|388266449|gb|EIK91994.1| ribonucleotide-diphosphate reductase subunit alpha [Hydrogenophaga
sp. PBC]
Length = 966
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/754 (65%), Positives = 613/754 (81%), Gaps = 6/754 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +E+ G E+ Q ++ +Y +YF +FI KG+D +LLNP + +
Sbjct: 214 IEKDPDYTYATARLLLHTIVREILGAEVPQAEMGQRYADYFPQFIQKGVDAELLNPDMLQ 273
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL PERDLQF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 274 FDLTRLGAALKPERDLQFDYLGLQTLYDRYFLHVRKSRIELPQAFFMRVAMGLSLNEIDR 333
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LS+F+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 334 EARAIEFYEILSTFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 393
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 394 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 453
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K W+LFSP + PDLH+KFG
Sbjct: 454 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVLEKGEWSLFSPSNTPDLHDKFG 513
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IK ++K+ A LWRK+LSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 514 TDFEKAYVAYEEKAARGEIKPYRKVPASDLWRKMLSMLFETGHPWITFKDACNVRSPQQH 573
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK----LDPIKLKKTIRIAMRM 416
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G+ LD KLKKTI AMRM
Sbjct: 574 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLRHLKDGENGKVLDHEKLKKTIATAMRM 633
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAVKKA+ SNLRHRPVGLG+MGFQD L+ +++PY+S EA++FAD+SME +C
Sbjct: 634 LDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALYELRVPYASNEAVEFADRSMEAVC 693
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYAY+ASTEL++E+GRYSS+ GSLWD+GILP D+L LL KERG Y+ V+ S SL+W L
Sbjct: 694 YYAYWASTELSKERGRYSSFKGSLWDKGILPPDTLDLLAKERGG-YVDVDRSSSLDWDAL 752
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +I + GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN YLVK+
Sbjct: 753 RQKIARDGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINGYLVKD 812
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK+ GLWD+ M+ +LK+FDG+L I R+P D++ +YATAFE+ P W++EA + RQKWIDQ
Sbjct: 813 LKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVEPVWLVEAAARRQKWIDQ 872
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEI 715
+QSLNIY++ SGKKLDETYKLAWLRGLKTTYYLR+ SA +KS G +++V++
Sbjct: 873 AQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTTSATQIEKSTGRTGQLNAVSVTPS 932
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + + + D CE+CQ
Sbjct: 933 APVAAAASATAVASEPATDVKFCAIDDPGCEACQ 966
>gi|121606274|ref|YP_983603.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas
naphthalenivorans CJ2]
gi|120595243|gb|ABM38682.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
naphthalenivorans CJ2]
Length = 967
Score = 1075 bits (2780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/706 (68%), Positives = 599/706 (84%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I+KEV +EI + ++Y YF +FI KGI N+LL+ KL +
Sbjct: 211 IEKDPDYTYATARLLLHTIRKEVLDEEISHEAMAVRYVTYFPEFIAKGIKNELLDEKLQQ 270
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL PERDLQF+YLGL+ L+DRYFLHI RIE+PQ FFMR+AMGLSLNE++R
Sbjct: 271 FDLARLGAALKPERDLQFDYLGLQTLFDRYFLHIRKQRIELPQAFFMRVAMGLSLNETDR 330
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFN+GT+RSQLSSCYL+TV DDL GI+++IKENALLSK
Sbjct: 331 EARAIEFYEILSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVADDLGGIYDAIKENALLSK 390
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR++G+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 391 FAGGLGNDWTPVRAMGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 450
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN + W+PDLFM+RV++K +WTLFSP D PDLH+KFG
Sbjct: 451 HLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMRRVMEKGSWTLFSPSDTPDLHDKFG 510
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
++FE++Y+ YE + + G++K +K+ A +WRK+LSMLFETGHPWITFKDACNIRSPQQH
Sbjct: 511 QDFEKAYVAYEARAERGELKPSRKLQATDMWRKMLSMLFETGHPWITFKDACNIRSPQQH 570
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGSINL H+K+G LD KLKKTI AMRMLDNV
Sbjct: 571 AGVVHSSNLCTEITLNTSATETAVCNLGSINLVQHLKDGALDHDKLKKTITTAMRMLDNV 630
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KA++SN+RHRPVGLG+MGFQDCL+ +++PY+S+ A++FAD SME ICY+AY
Sbjct: 631 IDINYYAVEKARHSNMRHRPVGLGLMGFQDCLYELRVPYASQAAVEFADTSMEAICYHAY 690
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+G+Y SY GSLWDQGILP D+L +L KERG Y++V+ S +L+W LR +I
Sbjct: 691 WASTELARERGQYESYKGSLWDQGILPLDTLDMLAKERGG-YVEVDRSATLDWDALRQKI 749
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
GMRNSNCVAIAPTATISNIIGV A IEP + NL +KSNLSGEFT IN YLV++LKK
Sbjct: 750 ATDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINHYLVRDLKKL 809
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P+D++ +YATAFEI +W++EAGS RQKWIDQ+QSL
Sbjct: 810 GLWDDVMVVDLKHFDGSLRPIDRVPNDIKALYATAFEIETSWLVEAGSRRQKWIDQAQSL 869
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLDETYKLAW+RGLKTTYYLR+ SA +A+KS + G
Sbjct: 870 NIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHAEKSTVQAG 915
>gi|34497742|ref|NP_901957.1| ribonucleotide-diphosphate reductase subunit alpha [Chromobacterium
violaceum ATCC 12472]
gi|34103598|gb|AAQ59959.1| ribonucleoside-diphosphate reductase system [Chromobacterium
violaceum ATCC 12472]
Length = 972
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/755 (65%), Positives = 610/755 (80%), Gaps = 16/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y VTARLLM I+ E+ G+ + Q ++ +Y YF+ +I KGI +LL+ KLAE
Sbjct: 228 IEQDPAYDYVTARLLMGNIRLEILGEAVSQDEMGKQYAPYFADYIKKGIAAELLDEKLAE 287
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL ERDLQF YLGL+ LYDRYFLH++G RIEMPQ F+MR+AMGL+LNE NR
Sbjct: 288 YDLKKLGAALDAERDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFYMRVAMGLALNEVNR 347
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT RSQLSSCYL+T+ DDL GI+E IKENALLSK
Sbjct: 348 EDRAIEFYKVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTIADDLDGIYEGIKENALLSK 407
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR++GS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 408 FAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 467
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ W+LFSP + PDLH+ +G
Sbjct: 468 HADIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWSLFSPSETPDLHDLYG 527
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y YE + G++K++K+I AL LWRK+L+MLFETGHPW+TFKD CNIRSPQQH
Sbjct: 528 QAFEKAYTAYEARGARGELKVYKRIPALSLWRKMLTMLFETGHPWVTFKDPCNIRSPQQH 587
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDN 419
+G++HSSNLCTEITLNT+ +EI VCNLGS+NL+ H+K +G LD KL++TIR A+RMLDN
Sbjct: 588 MGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLSAHLKEDGSLDADKLQRTIRTALRMLDN 647
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y VKKA+ SNL+HRPVG+GIMGFQDCLHI ++PY S A++FAD+SMEM+ Y+A
Sbjct: 648 VIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHIKRVPYGSNAAVEFADESMEMVAYFA 707
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
Y ASTELAEE+GRY SY GSLWD+G+LP DS+ LL ERG YL+V+ +E ++W KLR R
Sbjct: 708 YLASTELAEERGRYPSYSGSLWDRGVLPHDSINLLAAERGG-YLEVDRTERMDWNKLRER 766
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK+ GMRNSNC+AIAPTATI+NIIGVSASIEPTY+NL +KSNLSGEFT N YLV++LK
Sbjct: 767 IKQHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFTVTNEYLVRDLKA 826
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWDE M+A+LKYFDG+L QI R+P +L+ IYATAFE+ P W++EA S RQKWIDQ+QS
Sbjct: 827 AGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYATAFEVDPKWLVEAASRRQKWIDQAQS 886
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y++ SGKKLDE YK AWLRGLKTTYYLR+++A A+KS G L+ +S +
Sbjct: 887 LNLYMAGASGKKLDELYKHAWLRGLKTTYYLRTLAATSAEKSTGRGG----ELNAVSSQA 942
Query: 720 YNKNLQEIKNN-----KKCLINSEINDVNECESCQ 749
+ N K C I D +CESCQ
Sbjct: 943 QTAPAAAVDNTPATDAKFCSI-----DNPDCESCQ 972
>gi|114332418|ref|YP_748640.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
eutropha C91]
gi|114309432|gb|ABI60675.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
eutropha C91]
Length = 957
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/750 (65%), Positives = 615/750 (82%), Gaps = 9/750 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P YS VTARLL+ I+ EV G+++ + +Y +YF FI +G++ LL+ +L +
Sbjct: 216 IEKEPAYSFVTARLLLDNIRHEVLGEDVSHEAMQSRYADYFPGFIRQGMEAGLLDERLGQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ LS L+ +RDLQF YLGL+ LYDRYFLHI RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 276 FDLARLSETLIADRDLQFGYLGLQTLYDRYFLHISERRIELPQAFFMRVAMGLALNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY+LLS+F+FM STPTLFNSGT RSQLSSCYLSTVPD L GI+E+IKENALLSK
Sbjct: 336 EARAIEFYHLLSTFDFMSSTPTLFNSGTRRSQLSSCYLSTVPDSLDGIYEAIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR++G+ IKGTNG+SQGV+PFLKVV+D AVAVNQGGKRKGA+CAYLETW
Sbjct: 396 FAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKR+++ WTLFSP D PDLH K+G
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDLFMKRMLEDQEWTLFSPSDTPDLHEKYG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE+YI YE Q G++ L K+I A LWRK+L+MLFETGHPWITFKD CNIRSPQ H
Sbjct: 516 KAFEEAYIAYEEQATQGRLALHKRIPARQLWRKMLTMLFETGHPWITFKDPCNIRSPQNH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT++ EI VCNLGSINL H+ +GKLD KLK+T+ AMRMLDNV
Sbjct: 576 VGVVHSSNLCTEITLNTNEKEIAVCNLGSINLPAHIVDGKLDLTKLKQTVATAMRMLDNV 635
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+YAV KA+ +NLRHRPVGLGIMGFQDCLH + I Y+S+EA++FAD SME + Y+ Y
Sbjct: 636 IDINFYAVAKARNANLRHRPVGLGIMGFQDCLHKLGISYASREAVEFADSSMEAVAYHTY 695
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELAEE+G Y++Y GSLW++GILPQDSL LL++ERG +++V+ S +L+W LR RI
Sbjct: 696 WASTELAEERGTYATYHGSLWERGILPQDSLALLQEERGG-HVEVDTSSTLDWTPLRERI 754
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K++GMRNSNC+AIAPTATISNIIGVSASIEPTY+NL++KSNLSGEFT +N+ LV +LKK+
Sbjct: 755 KQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTVVNQSLVNDLKKQ 814
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWDE MIA+LK++DG S+I RIP++LR +YATAFEI P W++EA + RQKWIDQ+QSL
Sbjct: 815 DLWDEVMIADLKHYDGAASKIDRIPENLRALYATAFEIDPRWLVEAAARRQKWIDQAQSL 874
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y+S SGKK+D+ Y+LAWLRGLKTTYYLR++ A A+KS G ++N G+
Sbjct: 875 NLYMSGASGKKMDDLYRLAWLRGLKTTYYLRAMGATTAEKSTVHTG--TLNAVPAQQNGH 932
Query: 721 NKNLQEIKN-NKKCLINSEINDVNECESCQ 749
+ +I + K+C I D ECE+CQ
Sbjct: 933 TDSSGQIHSATKQCAI-----DDPECEACQ 957
>gi|398803255|ref|ZP_10562361.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
sp. CF318]
gi|398097134|gb|EJL87446.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
sp. CF318]
Length = 969
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/706 (68%), Positives = 602/706 (85%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLLM+ I++EV G+E+ Q D+ ++Y EYF +FI KG+ N+LL+ KL +
Sbjct: 213 IEKDPDYTYATARLLMHTIRREVLGEEVTQADMAVRYAEYFPQFIAKGVQNELLDEKLQQ 272
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL PERDL+F+YLGL+ L+DRYFLH+ RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 273 FDLARLGAALKPERDLKFDYLGLQTLFDRYFLHVRKQRIELPQAFFMRVAMGLSLNEIDR 332
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LSSF+FM STPTLFN+GT+RSQLSSCYL+TV DDL GI+++IKENALLSK
Sbjct: 333 EERAIEFYEILSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVADDLGGIYDAIKENALLSK 392
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 393 FAGGLGNDWTPVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 452
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K +WTLFSP D PDLH+KFG
Sbjct: 453 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGSWTLFSPSDTPDLHDKFG 512
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K+FE+ Y YE + + G+IK +K+ A +WRK+LSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 513 KDFEKIYTAYEAKAERGEIKPSRKVQATDMWRKMLSMLFETGHPWITFKDACNVRSPQQH 572
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G +D KLKKTI AMRMLDNV
Sbjct: 573 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHLKDGAVDHEKLKKTITTAMRMLDNV 632
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SN+RHRPVGLGIMGFQDCL+ +++PY+S+EA++FAD+SME +CY+AY
Sbjct: 633 IDINYYAVKKARDSNMRHRPVGLGIMGFQDCLYELRVPYASQEAVEFADKSMEAVCYHAY 692
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+Y+SY GSLWD+G+LP D+L +L ++RG Y++++ S +L+W+ LR +I
Sbjct: 693 WASTELAKERGKYASYKGSLWDKGVLPLDTLDMLAEQRGG-YVEIDRSATLDWEALRKKI 751
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNCVAIAPTATISNIIGV A IEP + NL +KSNLSGEFT IN YLV++LK+
Sbjct: 752 AKDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRL 811
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWD+ M+ +LK+FDG+L I R+P D++ +YATAFEI +WI+EA + RQKWIDQ+QSL
Sbjct: 812 NLWDDVMVVDLKHFDGSLRPIDRVPQDVKALYATAFEIETSWIVEAAARRQKWIDQAQSL 871
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR+ SA +A+KS G
Sbjct: 872 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHAEKSTVTAG 917
>gi|375107585|ref|ZP_09753846.1| ribonucleoside-diphosphate reductase, alpha subunit
[Burkholderiales bacterium JOSHI_001]
gi|374668316|gb|EHR73101.1| ribonucleoside-diphosphate reductase, alpha subunit
[Burkholderiales bacterium JOSHI_001]
Length = 972
Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/707 (67%), Positives = 598/707 (84%), Gaps = 1/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y++ TARLL++ ++KE+ G+E+ Q + +Y EYF +FI KGI+ + L+ K+A+
Sbjct: 212 IEKDPAYTRATARLLLHTVRKEIVGEELTQAQMATRYAEYFPQFIKKGIEAERLDAKMAQ 271
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L A+ PERD+QF+YLGL+ LYDRYF+H++ RIEMPQ FFMR+AMGL+LNE +R
Sbjct: 272 FDLAALGAAIQPERDMQFDYLGLQTLYDRYFIHVDERRIEMPQAFFMRVAMGLALNEIDR 331
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LS+F+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 332 EARAIEFYNVLSTFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEALKENALLSK 391
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 392 FAGGLGNDWTRVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 451
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 452 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFG 511
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y YE + G++KLFK++ A LWRK+L+MLFETGHPW+TFKDACN+RSPQQH
Sbjct: 512 ADFEAAYTAYEAKADRGELKLFKRVPAKDLWRKMLTMLFETGHPWVTFKDACNVRSPQQH 571
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS EI VCNLGS+NL H+K+G +D KLKKT+ AMRMLDNV
Sbjct: 572 AGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLAQHLKDGSIDHDKLKKTVATAMRMLDNV 631
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLGIMGFQD L+ +++PY+S EA++FAD+SME +CY+AY
Sbjct: 632 IDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRLPYASAEAVEFADRSMEAVCYHAY 691
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER-GSKYLKVNMSESLNWKKLRNR 539
AS++LA E+GRYSSY GSLWD+GILP D+L LL + R G+++++V+ S +L+W LR R
Sbjct: 692 AASSDLAAERGRYSSYRGSLWDRGILPHDTLDLLAQARGGAEFVQVDRSATLDWDALRAR 751
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I + GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT +N YLV++LKK
Sbjct: 752 IAQHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTIVNEYLVRDLKK 811
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD+ M+ +LK+FDG+L +I R+P +++ +YATAFE+ W++EA + RQKWIDQ+QS
Sbjct: 812 LGLWDDVMVMDLKHFDGSLRRIDRVPPEVKALYATAFEVDAQWLVEAAARRQKWIDQAQS 871
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
LNIY++ SGKKLDE YKLAWLRGLKTTYYLR++ A +A+KS G
Sbjct: 872 LNIYLAGASGKKLDEIYKLAWLRGLKTTYYLRTMGATHAEKSTVSAG 918
>gi|332286775|ref|YP_004418686.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
sp. T7-7]
gi|330430728|gb|AEC22062.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
sp. T7-7]
Length = 973
Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/761 (65%), Positives = 617/761 (81%), Gaps = 13/761 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E DP YSQVTARLL++ I+KEV G+E+ Q D+ +Y EYF +F+ GI+ LL+ KLA+
Sbjct: 214 VENDPSYSQVTARLLLHTIRKEVLGEEVSQSDMATRYAEYFPQFLKAGIEGGLLDEKLAQ 273
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL ERDLQFNYLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+LNE NR
Sbjct: 274 FDLPKLAAALKAERDLQFNYLGLQTLYDRYFLHLRGRRIELPQVFFMRVAMGLALNEINR 333
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LSSF+FM STPTLFNSGT+ SQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 334 EERAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLAGIYDAIKENALLAK 393
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 394 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 453
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+K+G
Sbjct: 454 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDAPDLHDKYG 513
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K+FEE+Y+ YE++ G++ LFKK+ A LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 514 KDFEEAYLGYEDKVARGELPLFKKVPANMLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 573
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGK--LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+K NG+ LD KL++TI IAMR
Sbjct: 574 VGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLAAHLKQDANGQYVLDHEKLERTIGIAMR 633
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SN+RHRPVG+G+MGFQDCLH+M++P++S +A++F+D+SME
Sbjct: 634 MLDNVIDINYYAVPKARNSNVRHRPVGMGVMGFQDCLHMMRVPFASDDAVEFSDRSMEAA 693
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+AS++LA E+G Y+S+ GSLWD+GILPQD+L LL +ERG Y++V+ S +L+W
Sbjct: 694 CYYAYWASSKLAAERGHYASFKGSLWDRGILPQDTLALLREERGG-YVEVDDSSTLDWDS 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR IK+ GMRNSNCVAIAPTATISNIIGVS IEP YRNL++KSNLSGEFT +N YLV+
Sbjct: 753 LRAHIKQHGMRNSNCVAIAPTATISNIIGVSPCIEPNYRNLYVKSNLSGEFTVVNDYLVR 812
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++ LWDE M+++LKYFDG+L++I RIP DLRK+YATAFE+ P W++E + R KWID
Sbjct: 813 DLKERKLWDEVMVSDLKYFDGSLARIDRIPADLRKLYATAFEVDPTWVVECAARRSKWID 872
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG------IDS 709
Q+QSLNI+++ SGKKLD+ YKLAW+RGLKTTYYLRSI A A+KS G S
Sbjct: 873 QAQSLNIFMAGVSGKKLDDIYKLAWVRGLKTTYYLRSIGATNAEKSTGRGGELNAVASGS 932
Query: 710 VNLDEISIKGYNKNLQEIKN-NKKCLINSEINDVNECESCQ 749
+ + L E + C + ECE+CQ
Sbjct: 933 TSPVAAAAAPAVAALPEAEVLGAVCTMRPGDEGFEECEACQ 973
>gi|348617977|ref|ZP_08884510.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Candidatus Glomeribacter gigasporarum BEG34]
gi|347816682|emb|CCD29168.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Candidatus Glomeribacter gigasporarum BEG34]
Length = 950
Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/754 (64%), Positives = 613/754 (81%), Gaps = 13/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P YS+ AR+L++ +++E GKE+ + +Y YF F+ +G+ LL+ KL +
Sbjct: 205 IEQEPAYSRAAARILLHILRREALGKEVTHAQMAARYARYFPVFVQRGVRAGLLDEKLLQ 264
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L++L AL+ RDLQF+YLGL+ LYDRYFLHI+G R+E+PQ F MR+AMGL+LNE++R
Sbjct: 265 FDLAMLGQALVAARDLQFSYLGLQTLYDRYFLHIDGARLELPQTFLMRVAMGLALNEADR 324
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
A++FY+LLS F+FM STPTLFN+GT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 325 NARAVEFYHLLSRFDFMSSTPTLFNAGTRRSQLSSCYLTTVADDLEGIYEALKENALLSK 384
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LG+ I+GTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 385 FAGGLGNDWTRVRALGAHIQGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 444
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRR HDMN A W+PDLFMKRV+ + WTLFSP D PDLH K+G
Sbjct: 445 HLDIEEFLELRKNTGDDRRRAHDMNTANWIPDLFMKRVLADAQWTLFSPSDCPDLHEKYG 504
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y+ YE + G+IKLFKK+ A LWRK+L MLFETGHPW+TFKD CNIRSPQQH
Sbjct: 505 ADFEAAYLDYEEKAARGEIKLFKKMPAAQLWRKMLGMLFETGHPWVTFKDPCNIRSPQQH 564
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNT+ +EI VCNLGSINL H++ NG +LD KLKKTI+ A+R
Sbjct: 565 VGVVHSSNLCTEITLNTNDSEIAVCNLGSINLVAHLRAADNGALRLDHDKLKKTIQTALR 624
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH ++IPY+S+ A++FAD+SME +
Sbjct: 625 MLDNVIDINYYAVAKARDSNLKHRPVGLGIMGFQDCLHALRIPYASEVAVEFADRSMEAV 684
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY+ASTELA+E+GRYSSYDGSLW +GILPQD+L LL + RG +++V+ S +L+W+
Sbjct: 685 CYYAYWASTELAQERGRYSSYDGSLWSRGILPQDTLALLAQARGG-HVEVDESGTLDWEA 743
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR RI ++GMRNSNCVAIAPTATISNI+GVSA IEPTY+NL +KSNLSGEFT +N YLV+
Sbjct: 744 LRRRIARYGMRNSNCVAIAPTATISNIVGVSACIEPTYQNLFVKSNLSGEFTVVNEYLVR 803
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK + LWD MIA+LKYFDG L++I R+P DLR +YATAFEI P W++EA + RQKWID
Sbjct: 804 DLKARDLWDAVMIADLKYFDGMLARIDRVPADLRDLYATAFEIDPKWLVEAAARRQKWID 863
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
QSQSLNIY++ SGKKLDE Y+LAW RGLKTTYYLR+++A + +KS G ++N +
Sbjct: 864 QSQSLNIYMAGASGKKLDEIYRLAWRRGLKTTYYLRTMAATHIEKSTVAHG--ALNAVAM 921
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + + ++ C + + + CE CQ
Sbjct: 922 SSESSAHSAPQV-----CALRPDDVNFEACEVCQ 950
>gi|91787005|ref|YP_547957.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas sp.
JS666]
gi|91696230|gb|ABE43059.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
Length = 969
Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/706 (68%), Positives = 600/706 (84%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLLM+ I++EV G+E+ Q ++ +Y EYF KFI KG+ N+LL+ KL +
Sbjct: 213 IEKDPDYTYATARLLMHTIRREVLGEEVSQEEMHSRYAEYFPKFIAKGVQNELLDEKLQQ 272
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL PERDL+F+YLGL+ L+DRYFLH+ RIE+PQ FFMR+AMGLSL E +R
Sbjct: 273 FDLARLGAALKPERDLKFDYLGLQTLFDRYFLHVRKQRIELPQAFFMRVAMGLSLGEIDR 332
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFN+GT+RSQLSSCYL+TV DDL GI+++IKENALLSK
Sbjct: 333 EARAIEFYEILSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVADDLGGIYDAIKENALLSK 392
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 393 FAGGLGNDWTPVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 452
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP D PDLH+KFG
Sbjct: 453 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSDTPDLHDKFG 512
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE+ Y YE + + G+IK +K+ A +WRK+LSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 513 KEFEKIYTAYEARAERGEIKPARKLQATDMWRKMLSMLFETGHPWITFKDACNVRSPQQH 572
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G +D KLKKTI AMRMLDNV
Sbjct: 573 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHLKDGAIDHDKLKKTITTAMRMLDNV 632
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SN+RHRPVGLGIMGFQDCL+ +++PY+S+EA++FAD+SME +CY+AY
Sbjct: 633 IDINYYAVKKARDSNMRHRPVGLGIMGFQDCLYELRVPYASQEAVEFADKSMEAVCYHAY 692
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+Y+SY GSLWD+GILP D+L +L +ERG Y++V+ S +L+W LR +I
Sbjct: 693 WASTELAKERGKYASYKGSLWDKGILPLDTLDMLAEERGG-YVEVDRSATLDWDALRQKI 751
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGV A IEP + NL +KSNLSGEFT IN YLV++LK+
Sbjct: 752 AQDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRL 811
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L + R+P +++ +YATAFE+ +WI+EA + RQKWIDQ+QSL
Sbjct: 812 GLWDDVMVVDLKHFDGSLRPVDRVPQEIKALYATAFEVETSWIVEAAARRQKWIDQAQSL 871
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR++ A +A+KS + G
Sbjct: 872 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHAEKSTVKAG 917
>gi|334129416|ref|ZP_08503221.1| Ribonucleoside-diphosphate reductase alpha subunit
[Methyloversatilis universalis FAM5]
gi|333445642|gb|EGK73583.1| Ribonucleoside-diphosphate reductase alpha subunit
[Methyloversatilis universalis FAM5]
Length = 957
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/754 (66%), Positives = 610/754 (80%), Gaps = 21/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y VTARLL++ ++ EV G+E+ Q + Y EYF ++I GI+ +LL+ KLA+
Sbjct: 220 LEQDPAYGYVTARLLLHTVRHEVLGEEVSQAQMATAYAEYFPRYIKLGIEAELLDSKLAQ 279
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL DL+FNYLGL+ LYDRYFLHI RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 280 FDLAKLGAALDHRNDLRFNYLGLQTLYDRYFLHIRDRRIELPQIFFMRVAMGLALNEIHR 339
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY LLSSF+FM STPTLFNSGT+R QLSSCYL+TV DDL GIFE+IKENALL+K
Sbjct: 340 EERAIEFYKLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVADDLDGIFEAIKENALLAK 399
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 400 FAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 459
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGDDRRRTHDMN A W+PDLFM+RV++ WTLFSP D PDLH+ +G
Sbjct: 460 HLDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMRRVMENGEWTLFSPADCPDLHDLYG 519
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y YE + G+I+LFKK A+ LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 520 SAFEQAYTRYEEKAARGEIRLFKKTQAVSLWRKMLSMLFETGHPWITFKDPCNLRSPQQH 579
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN----GK-LDPIKLKKTIRIAMR 415
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K+ GK LD KL+KTIR AMR
Sbjct: 580 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLKDDGNGGKALDHDKLRKTIRTAMR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V KA+ +NL+HRPVG+G+MGFQ+ LH ++ PY+S A++FAD+SME +
Sbjct: 640 MLDNVIDINYYSVGKARNANLKHRPVGMGLMGFQEALHELRTPYASDAAVEFADRSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYAY+ASTELAEE+GRYSSY GSLWD+GILP DSL +L ++RG YL+V+ S +++W
Sbjct: 700 AYYAYWASTELAEERGRYSSYKGSLWDRGILPHDSLDILAEQRGG-YLEVDRSVTMDWDA 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LRNRI +GMRNSNC+AIAPTATISNIIGV ASIEPTY+NL +KSNLSGEFT +N +LV+
Sbjct: 759 LRNRIANYGMRNSNCLAIAPTATISNIIGVDASIEPTYQNLFVKSNLSGEFTVVNEHLVR 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWDE M+A+LKYFDG+LS+I RIP D+R +YATAFE+ P W++EA S RQKWID
Sbjct: 819 DLKKLGLWDEVMVADLKYFDGSLSRIDRIPADIRALYATAFEVEPKWLVEAASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLDETYKLAWLRGLKTTYYLR++ A +A+KS G L+ +
Sbjct: 879 QAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRAMGATHAEKSTGRGG----ELNAV 934
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ E K C I D CE+CQ
Sbjct: 935 PSQA------EEPAPKFCAI-----DDPTCEACQ 957
>gi|383760081|ref|YP_005439067.1| ribonucleoside-diphosphate reductase, alpha subunit NrdA
[Rubrivivax gelatinosus IL144]
gi|381380751|dbj|BAL97568.1| ribonucleoside-diphosphate reductase, alpha subunit NrdA
[Rubrivivax gelatinosus IL144]
Length = 951
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/749 (64%), Positives = 610/749 (81%), Gaps = 6/749 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y++ TARLL++ I++E+ G +++ + +Y EYF +++ +G+ +LL+ +L
Sbjct: 209 IEKDPAYTRATARLLLHTIRREILGADVRPEAMAARYAEYFPEYVRQGVQAELLDEELQR 268
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL PERDLQF+YLGL+ LYDRYFLH++G RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 269 FDLVRLGAALKPERDLQFDYLGLQTLYDRYFLHVDGRRIELPQAFFMRVAMGLALNEIDR 328
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY++LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 329 EARAIEFYDVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLEGIYEALKENALLSK 388
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 389 FAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 448
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 449 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSSCPDLHDKFG 508
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y+ YE + G+++ FK++ A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 509 AAFEDAYVAYERKADQGEMRPFKRLPAKDLWRKMLTMLFETGHPWITFKDACNLRSPQQH 568
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS +EI VCNLGSINL H+ G +D KLK+T+ AMRMLDNV
Sbjct: 569 VGVVHSSNLCTEITLNTSASEIAVCNLGSINLAQHVAGGGIDQAKLKRTVSTAMRMLDNV 628
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ +NLRHRPVGLG+MGFQDCL+ +++PY+S+ A++FAD+SME +CY+AY
Sbjct: 629 IDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASEAAVEFADRSMEALCYHAY 688
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+AS+ELAEE+GRYSSY GSLWD+G+LPQD+L LL RG +++V+ SE+L+W LR RI
Sbjct: 689 WASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAARGG-HVEVDRSETLDWAALRARI 747
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT +N YLV++LK+
Sbjct: 748 AAHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVNEYLVRDLKRL 807
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+PD+L+++YATAFE+ W++EA + RQKWIDQ+QSL
Sbjct: 808 GLWDDVMVMDLKHFDGSLRAIDRVPDELKQLYATAFEVDARWLVEAAARRQKWIDQAQSL 867
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
NIY++ SGKKLDE YKLAW RGLKTTYYLR++SA +A+KS G + +
Sbjct: 868 NIYMAGASGKKLDEIYKLAWTRGLKTTYYLRTMSATHAEKSTVAPGAMNAVPQHGGLDAS 927
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + C I D +CE+CQ
Sbjct: 928 AAAAEPASDVRFCSI-----DNPDCEACQ 951
>gi|332526549|ref|ZP_08402661.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
benzoatilyticus JA2]
gi|332110817|gb|EGJ10994.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
benzoatilyticus JA2]
Length = 950
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/706 (67%), Positives = 595/706 (84%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y++ TARLL++ I++E+ G +++ + +Y EYF ++ +G+ +LL+ +L
Sbjct: 209 IEKDPAYTRATARLLLHTIRREILGADVRPEAMAARYAEYFPAYVRQGVQAELLDEELQR 268
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL PERDLQF+YLGL+ LYDRYFLH++G RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 269 FDLARLGAALKPERDLQFDYLGLQTLYDRYFLHVDGRRIELPQAFFMRVAMGLALNEIDR 328
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY++LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E++KENALLSK
Sbjct: 329 EARAIEFYDVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSK 388
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 389 FAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 448
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP PDLH+KFG
Sbjct: 449 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSSCPDLHDKFG 508
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y+ YE + G+I+ FK++ A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 509 AAFEQAYVAYERKADRGEIRPFKRLPARDLWRKMLTMLFETGHPWITFKDACNLRSPQQH 568
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS EI VCNLGSINL H+ G +D KLK+T+ AMRMLDNV
Sbjct: 569 VGVVHSSNLCTEITLNTSAGEIAVCNLGSINLAQHVAGGGIDQAKLKRTVSTAMRMLDNV 628
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ +NLRHRPVGLG+MGFQDCL+ +++PY+S A++FAD+SME +CY+AY
Sbjct: 629 IDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASDAAVEFADRSMEALCYHAY 688
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+AS+ELAEE+GRYSSY GSLWD+G+LPQD+L LL ERG +++V+ SE+L+W LR RI
Sbjct: 689 WASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAERGG-HVEVDRSETLDWAALRARI 747
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT +N YLV++LK+
Sbjct: 748 AVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVNEYLVRDLKRL 807
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L + R+PD+L+++YATAFE+ W++EA + RQKWIDQ+QSL
Sbjct: 808 GLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLVEAAARRQKWIDQAQSL 867
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLDE YKLAW RGLKTTYYLR++SA +A+KS G
Sbjct: 868 NIYMAGASGKKLDEIYKLAWTRGLKTTYYLRTMSATHAEKSTVAPG 913
>gi|296135013|ref|YP_003642255.1| ribonucleoside-diphosphate reductase subunit alpha [Thiomonas
intermedia K12]
gi|295795135|gb|ADG29925.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas
intermedia K12]
Length = 978
Score = 1069 bits (2764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/719 (68%), Positives = 604/719 (84%), Gaps = 14/719 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP YS+VTARLL++ +++E ++I Q + +Y EYF + I +G++ +LL+ +L +
Sbjct: 217 IERDPDYSKVTARLLLHTMRRETLNEDIPQEQMTQRYAEYFPRCIKEGVELELLDERLGQ 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFL--------HIEGIRIEMPQFFFMRIAMG 112
F+L+ L AL ERDLQF+YLGL+ LYDRYFL + +G RIE+PQ FFMR+AMG
Sbjct: 277 FDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELPQAFFMRVAMG 336
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
LSLNE +RE AI+FY LLSSF+FM STPTLFN+GT RSQLSSCYL+TV DDL GI+E+I
Sbjct: 337 LSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVADDLDGIYEAI 396
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
KENALLSK+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA
Sbjct: 397 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 456
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
+CAYLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV++ WTLFSP DV
Sbjct: 457 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGGEWTLFSPADV 516
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+KFGK+FE++Y YE + LG+IKLFK + A+ LWRK+LSMLFETGHPWITFKDAC
Sbjct: 517 PDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETGHPWITFKDAC 576
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLK 407
N+RSPQQHVG++HSSNLCTEITLNT+++EI VCNLGS+NL H+K+ +D KLK
Sbjct: 577 NVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADGAKVIDQAKLK 636
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+TI+ AMRMLDNVIDINYYAV KA+ +N++HRPVGLGIMGFQDCL+ ++IPY S++A++F
Sbjct: 637 RTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRIPYGSQQAVEF 696
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
AD+SME +CY AY+AS+ELA E+GRYSSY GSLWDQGILP DSLKLL ++RG Y++ +
Sbjct: 697 ADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGILPMDSLKLLAEQRGG-YVEADT 755
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
S +L+W LR +I + GMRNSNCVAIAPTATISNI+GV A IEPT++NL++KSNLSGEFT
Sbjct: 756 SSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYVKSNLSGEFT 815
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
IN+YLV++LK +GLWD M+A+LKYFDG+ +I RIP DL+ +YATAFE WIIEA
Sbjct: 816 VINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYATAFETDTQWIIEAA 875
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+ RQKWIDQ+QSLNIY++N SGK LD+TYKLAWLRGLKTTYYLR+I A +A+KS + G
Sbjct: 876 ARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHAEKSTVKAG 934
>gi|410692606|ref|YP_003623227.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
diphosphate reductase, alpha subunit) (Ribonucleotide
reductase large subunit) [Thiomonas sp. 3As]
gi|294339030|emb|CAZ87377.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
diphosphate reductase, alpha subunit) (Ribonucleotide
reductase large subunit) [Thiomonas sp. 3As]
Length = 974
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/764 (64%), Positives = 620/764 (81%), Gaps = 21/764 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP YS+VTARLL++ +++E ++I Q + +Y EYF + I +G++ +LL+ +L +
Sbjct: 217 IERDPDYSKVTARLLLHTMRRETLNEDIPQEQMTQRYAEYFPRCIKEGVELELLDERLGQ 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFL--------HIEGIRIEMPQFFFMRIAMG 112
F+L+ L AL ERDLQF+YLGL+ LYDRYFL + +G RIE+PQ FFMR+AMG
Sbjct: 277 FDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELPQAFFMRVAMG 336
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
LSLNE +RE AI+FY LLSSF+FM STPTLFN+GT RSQLSSCYL+TV DDL GI+E+I
Sbjct: 337 LSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVADDLDGIYEAI 396
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
KENALLSK+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA
Sbjct: 397 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 456
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
+CAYLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV++ WTLFSP DV
Sbjct: 457 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGGDWTLFSPADV 516
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+KFGK+FE++Y YE + LG+IKLFK + A+ LWRK+LSMLFETGHPWITFKDAC
Sbjct: 517 PDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETGHPWITFKDAC 576
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLK 407
N+RSPQQHVG++HSSNLCTEITLNT+++EI VCNLGS+NL H+K+ +D KLK
Sbjct: 577 NVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADGAKVIDQAKLK 636
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+TI+ AMRMLDNVIDINYYAV KA+ +N++HRPVGLGIMGFQDCL+ ++IPY S++A++F
Sbjct: 637 RTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRIPYGSQQAVEF 696
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
AD+SME +CY AY+AS+ELA E+GRYSSY GSLWDQG+LP DSLKLL ++RG Y++ +
Sbjct: 697 ADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGVLPMDSLKLLAEQRGG-YVEADT 755
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
S +L+W LR +I + GMRNSNCVAIAPTATISNI+GV A IEPT++NL++KSNLSGEFT
Sbjct: 756 SSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYVKSNLSGEFT 815
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
IN+YLV++LK +GLWD M+A+LKYFDG+ +I RIP DL+ +Y+TAFE WIIEA
Sbjct: 816 VINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYSTAFETDTQWIIEAA 875
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG- 706
+ RQKWIDQ+QSLNIY++N SGK LD+TYKLAWLRGLKTTYYLR+I A +A+KS + G
Sbjct: 876 ARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHAEKSTVKAGQ 935
Query: 707 IDSVNLDEISIKGYNKNLQEIKNN-KKCLINSEINDVNECESCQ 749
+++V + + + C I D ECE+CQ
Sbjct: 936 LNAVPQSPSESASASAQAVVQSGDIRYCAI-----DNPECEACQ 974
>gi|160896948|ref|YP_001562530.1| ribonucleotide-diphosphate reductase subunit alpha [Delftia
acidovorans SPH-1]
gi|160362532|gb|ABX34145.1| ribonucleoside-diphosphate reductase, alpha subunit [Delftia
acidovorans SPH-1]
Length = 973
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/704 (69%), Positives = 588/704 (83%), Gaps = 1/704 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ VTARLL++ I +EV G++++ DI Y EYF FI KG+DN+LLNP+L
Sbjct: 217 IEKDPDYTYVTARLLLHTIVREVMGRDVQPADIQAAYAEYFPGFIRKGVDNELLNPELLN 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ A+ ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+L E +R
Sbjct: 277 YDLPRLAAAIKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALQEEDR 336
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 337 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 396
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 397 FAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 456
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP DV DLH+ FG
Sbjct: 457 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLFSPSDVGDLHDLFG 516
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE +Y YE + G++KLFK+I A+ LWRK+LSMLFETGHPW+TFKD CN+RSPQQH
Sbjct: 517 AAFEHAYTAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVTFKDPCNVRSPQQH 576
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+ +G +D KL+KTI AMRMLDNV
Sbjct: 577 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLRKTITTAMRMLDNV 636
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVGLG+MGFQD L+ M+I Y+S A++FADQSME ICYYAY
Sbjct: 637 IDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEFADQSMEAICYYAY 696
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+YSSY GSLWDQGILP D+L LLEK RG Y++V+ S L+W LR +I
Sbjct: 697 WASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGG-YVEVDRSSRLDWDALRAKI 755
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 756 GQHGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKRL 815
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P D++ +YATAFE+ P W++EA + RQKWIDQ+QSL
Sbjct: 816 GLWDDVMVMDLKHFDGSLRPIDRVPQDVKSLYATAFEVEPTWLVEAAARRQKWIDQAQSL 875
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR+ SA +KS +
Sbjct: 876 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTTSATNIEKSTVQ 919
>gi|398809048|ref|ZP_10567903.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax sp.
CF313]
gi|398086342|gb|EJL76961.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax sp.
CF313]
Length = 971
Score = 1067 bits (2760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/706 (68%), Positives = 594/706 (84%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I KE+ G+E+ ++ Y +YF +FI KG++N+LL+ KL +
Sbjct: 216 IEKDPDYTFATARLLLHTIFKEIIGREVMPVERATAYADYFPQFIKKGVENELLDEKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 276 YDLPRLGAALKAERDNQFDYLGLQTLYDRYFLHVRKTRIELPQAFFMRVAMGLSLNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFN+GT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 336 EARAIEFYEVLSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP +VPDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G IK + I A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 ADFEKAYVAYEEKAARGDIKPARTIQATDLWRKMLTMLFETGHPWITFKDACNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+GK+D KLK+TI AMRMLDNV
Sbjct: 576 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNV 635
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLG+MGFQD L+ ++IPY+S+EA++FAD+SME ICY+AY
Sbjct: 636 IDINYYAVKKARDSNLRHRPVGLGLMGFQDALYELRIPYASQEAVQFADESMEAICYHAY 695
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+G+YSSY GSLWD+GILP DSL LLEK RG Y++V+ S +L+W LR +I
Sbjct: 696 WASTELARERGKYSSYKGSLWDKGILPIDSLDLLEKARGG-YVEVDRSATLDWDTLRQKI 754
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN YLV++LK+
Sbjct: 755 KADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRL 814
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P D++ +YATAFE+ W++EA + RQKWIDQ+QSL
Sbjct: 815 GLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVETTWLVEAAARRQKWIDQAQSL 874
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLD+TYKLAW+RGLKTTYYLR+ SA +A+KS + G
Sbjct: 875 NIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTQSATHAEKSTVQSG 920
>gi|333916624|ref|YP_004490356.1| ribonucleoside-diphosphate reductase subunit alpha [Delftia sp.
Cs1-4]
gi|333746824|gb|AEF92001.1| ribonucleoside-diphosphate reductase, alpha subunit [Delftia sp.
Cs1-4]
Length = 973
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/704 (69%), Positives = 587/704 (83%), Gaps = 1/704 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ VTARLL++ I +EV G+++ DI Y EYF FI KG+DN+LLNP+L
Sbjct: 217 IEKDPDYTYVTARLLLHTIVREVMGRDVHPADIQAAYAEYFPGFIRKGVDNELLNPELLN 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ A+ ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+L E +R
Sbjct: 277 YDLPRLAAAIKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALQEEDR 336
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 337 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 396
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 397 FAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 456
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP DV DLH+ FG
Sbjct: 457 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLFSPSDVGDLHDLFG 516
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE +Y YE + G++KLFK+I A+ LWRK+LSMLFETGHPW+TFKD CN+RSPQQH
Sbjct: 517 AAFEHAYKAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVTFKDPCNVRSPQQH 576
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+ +G +D KL+KTI AMRMLDNV
Sbjct: 577 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLRKTITTAMRMLDNV 636
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVGLG+MGFQD L+ M+I Y+S A++FADQSME ICYYAY
Sbjct: 637 IDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEFADQSMEAICYYAY 696
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+YSSY GSLWDQGILP D+L LLEK RG Y++V+ S L+W LR +I
Sbjct: 697 WASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGG-YVEVDRSSRLDWDALRAKI 755
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 756 GQHGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKRL 815
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P D++ +YATAFE+ P W++EA + RQKWIDQ+QSL
Sbjct: 816 GLWDDVMVMDLKHFDGSLRPIDRVPQDVKSLYATAFEVEPTWLVEAAARRQKWIDQAQSL 875
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR+ SA +KS +
Sbjct: 876 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTTSATNIEKSTVQ 919
>gi|332530700|ref|ZP_08406631.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
gracilis ATCC 19624]
gi|332039868|gb|EGI76263.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
gracilis ATCC 19624]
Length = 988
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/706 (68%), Positives = 588/706 (83%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL + I KEV G++++ ++ Y +YF FI KG+D +LLNP+L +
Sbjct: 219 IEKDPDYTYATARLLFHTIAKEVLGRDVQPSEMKQAYADYFPGFIKKGVDAELLNPELLQ 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL ERD QF+YLGL+ LYDRYFLH++ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 279 YDLKRLGAALKSERDQQFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGLALNEIDR 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 339 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 399 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K WTLFSP D PDLH+ FG
Sbjct: 459 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGEWTLFSPSDAPDLHDLFG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y+ YE + K G++K K + A+ LWRK+LSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 519 SAFEKAYVAYEAKAKRGELKPSKTVPAIDLWRKMLSMLFETGHPWITFKDACNVRSPQQH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+ +GKLD KLKKTI AMRMLDNV
Sbjct: 579 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLKQHITDGKLDHEKLKKTISTAMRMLDNV 638
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLG+M FQD L+ M+IPY+S A++FAD+SME ICYYAY
Sbjct: 639 IDINYYAVKKARDSNLRHRPVGLGVMAFQDALYEMRIPYASDAAVQFADESMEAICYYAY 698
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+G YSSY GSLW +GILP D+L+LL +ERG Y++V+ S +L+W+ LR +I
Sbjct: 699 WASTELARERGVYSSYQGSLWSKGILPPDTLELLARERGG-YVEVDRSATLDWELLRKKI 757
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN YLVK+LK+
Sbjct: 758 AADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTIINGYLVKDLKRL 817
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE M+ +LK+FDG+L I R+P D++ +YATAFE+ P+W++EA + RQKWIDQ+QSL
Sbjct: 818 GLWDEVMVMDLKHFDGSLLPIDRVPQDIKALYATAFEVEPSWLVEAAARRQKWIDQAQSL 877
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLD+TYKLAW RGLKTTYYLR+ SA A+KS G
Sbjct: 878 NIYMAGASGKKLDDTYKLAWTRGLKTTYYLRTTSATQAEKSTVAAG 923
>gi|319791702|ref|YP_004153342.1| ribonucleoside-diphosphate reductase subunit alpha [Variovorax
paradoxus EPS]
gi|315594165|gb|ADU35231.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
paradoxus EPS]
Length = 971
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/706 (68%), Positives = 594/706 (84%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I KE+ G+E+ +D Y +YF +FI KG++N LL+ KL +
Sbjct: 216 IEKDPDYTFATARLLLHTIFKEIIGREVMPVDRATAYADYFPQFIKKGVENDLLDEKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGLSL E +R
Sbjct: 276 YDLPRLGAALKAERDNQFDYLGLQTLYDRYFLHVRKTRIELPQAFFMRVAMGLSLGEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFN+GT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 336 EARAIEFYEVLSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP +VPDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IK + I A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 ADFEKAYVAYEEKAARGEIKPARTIQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+GK+D KLK+TI AMRMLDNV
Sbjct: 576 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNV 635
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLG+MGFQD L+ ++IPY+S+EA++FAD+SME ICY+AY
Sbjct: 636 IDINYYAVKKARDSNLRHRPVGLGLMGFQDALYELRIPYASQEAVQFADESMEAICYHAY 695
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+YSSY GSLWD+GILP D+L LLE+ RG Y++V+ S +L+W LR +I
Sbjct: 696 WASTELAKERGKYSSYKGSLWDKGILPIDTLDLLEQARGG-YVEVDRSATLDWDALRAKI 754
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN YLV++LK+
Sbjct: 755 KADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRL 814
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P D++ +YATAFE+ W++EA S RQKWIDQ+QSL
Sbjct: 815 GLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVETTWLVEAASRRQKWIDQAQSL 874
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR+ SA +A+KS + G
Sbjct: 875 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHAEKSTVQSG 920
>gi|239813963|ref|YP_002942873.1| ribonucleotide-diphosphate reductase subunit alpha [Variovorax
paradoxus S110]
gi|239800540|gb|ACS17607.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
paradoxus S110]
Length = 971
Score = 1064 bits (2751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/706 (68%), Positives = 593/706 (83%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I KE+ G+E+ + Y +YF +FI KG++N LL+ KL +
Sbjct: 216 IEKDPDYTFATARLLLHTIFKEIIGREVMPAERATAYADYFPQFIKKGVENDLLDEKLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGLSL E +R
Sbjct: 276 YDLPRLGAALKAERDNQFDYLGLQTLYDRYFLHVRKSRIELPQAFFMRVAMGLSLGEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFN+GT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 336 EARAIEFYEVLSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP +VPDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IK + I A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 ADFEKAYVAYEEKAARGEIKPARTIQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+GK+D KLK+TI AMRMLDNV
Sbjct: 576 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNV 635
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLG+MGFQD L+ ++IPY+S+EA++FAD+SME ICY+AY
Sbjct: 636 IDINYYAVKKARDSNLRHRPVGLGLMGFQDALYELRIPYASQEAVQFADESMEAICYHAY 695
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+G+YSSY GSLWD+GILP D+L LLEK RG Y++V+ S +L+W+ LR +I
Sbjct: 696 WASTELARERGKYSSYKGSLWDKGILPIDTLDLLEKARGG-YVEVDRSATLDWEALRQKI 754
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN YLV++LK+
Sbjct: 755 KADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRL 814
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P D++ +YATAFE+ W++EA + RQKWIDQ+QSL
Sbjct: 815 GLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVETTWLVEAAARRQKWIDQAQSL 874
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR+ SA +A+KS + G
Sbjct: 875 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHAEKSTVQSG 920
>gi|241764093|ref|ZP_04762130.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
delafieldii 2AN]
gi|241366557|gb|EER61045.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
delafieldii 2AN]
Length = 975
Score = 1063 bits (2748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/702 (68%), Positives = 591/702 (84%), Gaps = 1/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+E+ D+ Y +YF +FI KG++N LL+ +L +
Sbjct: 211 IEKDPDYTYATARLLLHTIVREVLGREVAPADMAQSYVDYFPQFIKKGVENDLLDERLLQ 270
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL ERDLQF+YLGL+ LYDRYFLH++ RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 271 YDLQRLGAALKAERDLQFDYLGLQTLYDRYFLHVKKNRIELPQAFFMRVAMGLSLNEIDR 330
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 331 EARAIEFYEILSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 390
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 391 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 450
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP +VPDLH+ FG
Sbjct: 451 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFG 510
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IK + + A LWRKIL+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 511 TDFEKAYVAYEEKAARGEIKPARTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQH 570
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+KNG++D KLKKTI +AMRMLDNV
Sbjct: 571 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKNGQIDHDKLKKTITVAMRMLDNV 630
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLG+M FQD L+ ++IPY+S+EA++FADQSME ICYYAY
Sbjct: 631 IDINYYAVKKARDSNLRHRPVGLGVMAFQDSLYELRIPYASQEAVEFADQSMEAICYYAY 690
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+GRYSSY GSLWD+GILP D+L +L + RG Y++V+ S +L+W LR +I
Sbjct: 691 WASTELARERGRYSSYKGSLWDRGILPLDTLDMLAQARGG-YVEVDRSATLDWDALRKKI 749
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGV ASIEP++ NL +KSNLSGEFT IN LV++LK+
Sbjct: 750 AQDGMRNSNCVAIAPTATISNIIGVDASIEPSFGNLSVKSNLSGEFTVINGGLVRDLKRL 809
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ MI +LK+F G+L I R+P D++ +Y+TAFE+ P W++EA S RQKWIDQ+QSL
Sbjct: 810 GLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVEPRWLVEAASRRQKWIDQAQSL 869
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
NIY++ SGKKLD+TYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 870 NIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTQSATHVEMST 911
>gi|299533978|ref|ZP_07047330.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
testosteroni S44]
gi|298717887|gb|EFI58892.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
testosteroni S44]
Length = 969
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/704 (68%), Positives = 594/704 (84%), Gaps = 1/704 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ VTARLL++ I +EV G++++ ++ Y +YF F+ KG+DN+LLNP+L
Sbjct: 210 IEKDPDYTYVTARLLLHTIVREVMGRDVQPAEMQTAYADYFPGFVQKGVDNELLNPELLN 269
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 270 YDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALNEPDR 329
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 330 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 389
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 390 FAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 449
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP D PDLH+ +G
Sbjct: 450 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGQWTLFSPADAPDLHDLYG 509
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y YE +T G++KLFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 510 EAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 569
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS E VCNLGS+NL H+K+GK+D KL+KT+ AMRMLDNV
Sbjct: 570 VGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVNTAMRMLDNV 629
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVG+G+MGFQD L+ M+ Y+S+ A++FAD++ME ICYYAY
Sbjct: 630 IDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEAMEAICYYAY 689
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTEL++E+G YS++ GSLWDQGILP D+LKLLEK RG Y++V+ S L+W LR +I
Sbjct: 690 WASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGG-YVEVDRSAKLDWDALRAKI 748
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 749 AQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKRL 808
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P +++ +YATAFE+SP W++EA S RQKWIDQ+QSL
Sbjct: 809 GLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQKWIDQAQSL 868
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
NIY++ SGKKL +TY LAWLRGLKTTYYLR+ SA +KS +
Sbjct: 869 NIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912
>gi|121595924|ref|YP_987820.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
JS42]
gi|120608004|gb|ABM43744.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp.
JS42]
Length = 972
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/702 (67%), Positives = 594/702 (84%), Gaps = 1/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+++ D+ + Y E F +FI +G+DN+LL+P+L E
Sbjct: 212 IEKDPGYTYATARLLLHTIVREVLGRDVNPADMALAYAENFPQFIRQGVDNELLDPRLME 271
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL ERDLQF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+L E +R
Sbjct: 272 FDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKTRIELPQTFFMRVAMGLALREDDR 331
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPD+L GI+ESIKENALLSK
Sbjct: 332 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDELEGIYESIKENALLSK 391
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LG+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 392 FAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 451
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP DVPDLH+ +G
Sbjct: 452 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGLWTLFSPSDVPDLHDLYG 511
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++YI YE + + G++ LFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 512 QAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 571
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS E VCNLGS+NL H+K+G +D KL+KT+ AMRMLDNV
Sbjct: 572 VGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLKDGGIDHDKLRKTVSTAMRMLDNV 631
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVGLG+MGFQD L+ ++IPY+S A++FAD SME +CYYAY
Sbjct: 632 IDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRIPYASDAAVEFADTSMEALCYYAY 691
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+AST+LA+E+G+YSSY GSLW QGILP DSL+LLE+ERG Y++V+ + L+W LR +I
Sbjct: 692 WASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQERGG-YVEVDRTTRLDWDMLRAKI 750
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNC+AIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 751 AQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKQL 810
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+F G+L I R+P ++ +YATAFE++P W++EA + RQKWIDQ+QSL
Sbjct: 811 GLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEVAPTWLVEAAARRQKWIDQAQSL 870
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
NIY++ SGKKLDETYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 871 NIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHVEMST 912
>gi|221065169|ref|ZP_03541274.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
testosteroni KF-1]
gi|220710192|gb|EED65560.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
testosteroni KF-1]
Length = 969
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/704 (68%), Positives = 593/704 (84%), Gaps = 1/704 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ VTARLL++ I +EV G++++ ++ Y +YF F+ KG+DN+LLNP+L
Sbjct: 210 IEKDPDYTYVTARLLLHTIVREVMGRDVQPAEMQAAYADYFPGFVQKGVDNELLNPELLN 269
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 270 YDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALNEPDR 329
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 330 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 389
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 390 FAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 449
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+ +G
Sbjct: 450 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGQWTLFSPADAPDLHDLYG 509
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y YE +T G++KLFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 510 EAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 569
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS E VCNLGS+NL H+K+GK+D KL+KT+ AMRMLDNV
Sbjct: 570 VGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVNTAMRMLDNV 629
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVG+G+MGFQD L+ M+ Y+S+ A++FAD++ME ICYYAY
Sbjct: 630 IDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEAMEAICYYAY 689
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTEL++E+G YS++ GSLWDQGILP D+LKLLEK RG Y++V+ S L+W LR +I
Sbjct: 690 WASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGG-YVEVDRSAKLDWDALRAKI 748
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 749 AKDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKRL 808
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P +++ +YATAFE+SP W++EA S RQKWIDQ+QSL
Sbjct: 809 GLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQKWIDQAQSL 868
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
NIY++ SGKKL +TY LAWLRGLKTTYYLR+ SA +KS +
Sbjct: 869 NIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912
>gi|418529837|ref|ZP_13095764.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
testosteroni ATCC 11996]
gi|371452893|gb|EHN65918.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
testosteroni ATCC 11996]
Length = 969
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/704 (68%), Positives = 593/704 (84%), Gaps = 1/704 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ VTARLL++ I +EV G++++ ++ Y +YF F+ KG+DN+LLNP+L
Sbjct: 210 IEKDPDYTYVTARLLLHTIVREVMGRDVQPAEMQAAYADYFPGFVQKGVDNELLNPELLN 269
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 270 YDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALNEPDR 329
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 330 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 389
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 390 FAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 449
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+ +G
Sbjct: 450 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGQWTLFSPADAPDLHDLYG 509
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y YE +T G++KLFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 510 EAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 569
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS E VCNLGS+NL H+K+GK+D KL+KT+ AMRMLDNV
Sbjct: 570 VGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVNTAMRMLDNV 629
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVG+G+MGFQD L+ M+ Y+S+ A++FAD++ME ICYYAY
Sbjct: 630 IDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEAMEAICYYAY 689
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTEL++E+G YS++ GSLWDQGILP D+LKLLEK RG Y++V+ S L+W LR +I
Sbjct: 690 WASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGG-YVEVDRSAKLDWDALRAKI 748
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 749 AKDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKRL 808
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P +++ +YATAFE+SP W++EA S RQKWIDQ+QSL
Sbjct: 809 GLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQKWIDQAQSL 868
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
NIY++ SGKKL +TY LAWLRGLKTTYYLR+ SA +KS +
Sbjct: 869 NIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912
>gi|302877616|ref|YP_003846180.1| ribonucleoside-diphosphate reductase subunit alpha [Gallionella
capsiferriformans ES-2]
gi|302580405|gb|ADL54416.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella
capsiferriformans ES-2]
Length = 944
Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/755 (65%), Positives = 608/755 (80%), Gaps = 21/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ VTARLL+ I EV G+++ D+ +Y +YF KFI +GI +LL+ KLA
Sbjct: 205 IEKEPAYNFVTARLLLNNICSEVLGEDVAPADMATRYADYFPKFIKRGIAAELLDEKLAG 264
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ L RDLQF YLGL+ LYDRYFLHI G RIE PQ FFMR+AMGL+LNE +R
Sbjct: 265 FDLPRLAAELDASRDLQFGYLGLQTLYDRYFLHIGGTRIEAPQVFFMRVAMGLALNEIDR 324
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLS F+FMCSTPTLFNSG+ RSQLSSCYLSTV D+L GI+++IK+NALL+K
Sbjct: 325 EARAIEFYRLLSGFDFMCSTPTLFNSGSRRSQLSSCYLSTVEDNLEGIYDAIKDNALLAK 384
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 385 FAGGLGNDWTPVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 444
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGDDRRRTHDMN + W+PDLFMKRV++ WTLFSP DV DLH+ FG
Sbjct: 445 HLDIEEFLDLRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGNWTLFSPSDVKDLHDLFG 504
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE +Y YE + G+IKL+K + A LWRK+L+MLFETGHPWITFKD CNIRSPQQH
Sbjct: 505 IDFEIAYTAYEEKAAAGQIKLYKTVQAASLWRKMLTMLFETGHPWITFKDPCNIRSPQQH 564
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK------NGKLDPIKLKKTIRIAM 414
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ G++D KL++TI AM
Sbjct: 565 VGVVHSSNLCTEITLNTNADEIAVCNLGSVNLPAHLYPEGHDLAGQIDHAKLRRTINTAM 624
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYYAV KA+ SNL+HRPVG+GIMGFQDCLH +++PYSS EA++FAD+SME
Sbjct: 625 RMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHQLRLPYSSMEAVEFADRSMEA 684
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+CYYAY+ASTELAEE+GRY+SY GSLWD GILPQD+L LL +ERG Y++V+ S S++W
Sbjct: 685 VCYYAYWASTELAEERGRYASYKGSLWDCGILPQDTLDLLREERGG-YVEVDTSVSMDWD 743
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI ++GMRNSNCVAIAPTATISNIIGVSA IEPTY+NL +KSNLSGEFT IN +LV
Sbjct: 744 ALRARIGQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLFVKSNLSGEFTVINDHLV 803
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK+ GLWDE MI++LKYFDG+L++I RIP +LR +YATAFE+ P+W+IEA S RQKWI
Sbjct: 804 AELKRLGLWDEVMISDLKYFDGSLAKIDRIPAELRSLYATAFEVEPSWLIEAASRRQKWI 863
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLNIY++ SG+KLD+TYKLAW+RGLKTTYYLR++ A A+KS G L+
Sbjct: 864 DQAQSLNIYMAGVSGRKLDDTYKLAWVRGLKTTYYLRTLGATSAEKSTGRAGA----LNA 919
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S+ + + C I D ECE+CQ
Sbjct: 920 VSVGD-----APAETTQFCSI-----DNPECEACQ 944
>gi|74317994|ref|YP_315734.1| ribonucleotide-diphosphate reductase subunit alpha [Thiobacillus
denitrificans ATCC 25259]
gi|74057489|gb|AAZ97929.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus
denitrificans ATCC 25259]
Length = 974
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/756 (64%), Positives = 614/756 (81%), Gaps = 9/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP YS VTARLL+ I+ EV G+ + Q + +Y EYF FI KGI +LL+ KL +
Sbjct: 221 IEQDPAYSLVTARLLLNSIRHEVLGEAVTQAQMSERYAEYFPAFIKKGIAAELLDEKLGQ 280
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ L RD QF YLGL+ LYDRYFLHIE RIE+PQ FFMR+AMGL++NE +R
Sbjct: 281 FDLARLARVLDAGRDYQFGYLGLQTLYDRYFLHIEENRIELPQAFFMRVAMGLAINEIDR 340
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT SQLSSCYL+TV DDL GI+++IKENA+L K
Sbjct: 341 ESRAIEFYQVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVTDDLDGIYQAIKENAMLQK 400
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR++G+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 401 YAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 460
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGDDRRRTHDMN A W+PDLFM+RV++ WTLFSP DVPDLH+ +G
Sbjct: 461 HLDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVMEGGDWTLFSPNDVPDLHDLYG 520
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
++F E+Y YE + G++KL+K+I AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 521 RKFAEAYTEYERKADRGELKLYKRIPALQLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 580
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+ +E+ VCNLGS+NL H+K+GKLD KLK TI AMRMLDNV
Sbjct: 581 VGVVHSSNLCTEITLNTNDHEVAVCNLGSVNLVNHLKDGKLDLDKLKNTIHTAMRMLDNV 640
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
+D+NYYAV KA+ SNL+HRPVGLGIMGFQD L +++ Y+S +A++FAD+SME + YYAY
Sbjct: 641 VDVNYYAVGKARNSNLKHRPVGLGIMGFQDALQELRVAYASNDAVEFADRSMEAVAYYAY 700
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+GRYSSY+GSLW +GILP DS +LL +ERG YL+V+ S +L+W LR RI
Sbjct: 701 WASTELAQERGRYSSYEGSLWSKGILPHDSNRLLLEERGG-YLEVDSSATLDWDSLRQRI 759
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++GMRNSNC+AIAPTATI+NI+GVSASIEPTY+NL++KSNLSGEFT N+YLV +LKK
Sbjct: 760 AQYGMRNSNCLAIAPTATIANIVGVSASIEPTYQNLYVKSNLSGEFTVANKYLVADLKKL 819
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
G+WDE M+A++KYFDG+L++I RIP +LR +YATAFE+ P+W++E S RQKWIDQ+QSL
Sbjct: 820 GMWDEVMVADIKYFDGSLARIDRIPAELRALYATAFEMEPSWLVECASRRQKWIDQAQSL 879
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVN------LD 713
NIY++ SGKKLD+ YKLAWLRGLKTTYYLR++ A A+KS + G +++V+ +
Sbjct: 880 NIYMAGASGKKLDDIYKLAWLRGLKTTYYLRTLGATSAEKSTGKGGELNAVSAHVGGGMS 939
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ N + EI+ K C + ECE+CQ
Sbjct: 940 AMDAAAANLPVPEIE-GKVCTMRPGDPGFEECEACQ 974
>gi|337281113|ref|YP_004620585.1| ribonucleoside-diphosphate reductase subunit alpha [Ramlibacter
tataouinensis TTB310]
gi|334732190|gb|AEG94566.1| Candidate ribonucleoside-diphosphate reductase, alpha chain
[Ramlibacter tataouinensis TTB310]
Length = 968
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/757 (64%), Positives = 611/757 (80%), Gaps = 9/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I KEV G++I+ ++ Y +YF FI KG++ +LLNP+L +
Sbjct: 213 IEKDPDYTYATARLLLHTIFKEVLGRDIEPAEMAASYADYFPGFIKKGVEAELLNPELLQ 272
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL +RDL+F+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 273 YDLQRLGAALKADRDLKFDYLGLQTLYDRYFLHVRKTRIELPQAFFMRVAMGLALNEIDR 332
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 333 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 392
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 393 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 452
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K WTLFSP VPDLH+ FG
Sbjct: 453 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGEWTLFSPSSVPDLHDLFG 512
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y+ YE + K G+IK K + A +WRK+LSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 513 AAFEKAYVAYEEKAKRGEIKPSKTVQATDMWRKMLSMLFETGHPWITFKDACNVRSPQQH 572
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGSINL H+K+G +D KLK+TI AMRMLDNV
Sbjct: 573 AGVVHSSNLCTEITLNTSDAETAVCNLGSINLLQHLKDGGVDHAKLKRTIATAMRMLDNV 632
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLG+M FQD L+ ++IPY+S+ A++FAD+SME +CYYAY
Sbjct: 633 IDINYYAVKKARDSNLRHRPVGLGVMAFQDALYELRIPYASQAAVEFADRSMEAVCYYAY 692
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+GRYSSY GSLWD+G+LP D+L+LL ++RG +++V+ S +L+W LR +I
Sbjct: 693 WASTELARERGRYSSYKGSLWDKGVLPPDTLELLAQQRGG-WVEVDRSATLDWDALRKKI 751
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN YLV++LK+
Sbjct: 752 AQDGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRL 811
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P D++ +YATAFE+ P W++EA + RQKWIDQ+QSL
Sbjct: 812 GLWDDVMVMDLKHFDGSLRPIDRVPQDVKSLYATAFEVEPVWLVEAAARRQKWIDQAQSL 871
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIKG 719
NIY++ SGKKLDETYKLAW RGLKTTYYLR+ISA +++KS G +++V+ S G
Sbjct: 872 NIYMAGASGKKLDETYKLAWTRGLKTTYYLRTISATHSEKSTVTSGRLNAVSNGGSSAGG 931
Query: 720 YNKNLQEIKNNKKCLINSEINDVN-------ECESCQ 749
+ + + + +D+ CE+CQ
Sbjct: 932 MSALDAAAAAAQAQMNAAPASDIKFCAIDDPSCEACQ 968
>gi|264680214|ref|YP_003280124.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
CNB-2]
gi|262210730|gb|ACY34828.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
CNB-2]
Length = 969
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/704 (68%), Positives = 593/704 (84%), Gaps = 1/704 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ VTARLL++ I +EV G++++ ++ Y +YF F+ KG+DN+LLNP+L
Sbjct: 210 IEKDPDYTYVTARLLLHTIVREVMGRDVQPAEMQAAYADYFPGFVQKGVDNELLNPELLN 269
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL ERD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 270 YDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALNEPDR 329
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 330 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 389
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 390 FAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 449
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ WTLFSP D PDLH+ +G
Sbjct: 450 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGQWTLFSPADAPDLHDLYG 509
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++Y YE +T G++KLFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 510 EAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 569
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS E VCNLGS+NL H+K+GK+D KL+KT+ AMRMLDNV
Sbjct: 570 VGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVNTAMRMLDNV 629
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVG+G+MGFQD L+ M+ Y+S+ A++FAD++ME ICYYAY
Sbjct: 630 IDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEAMEAICYYAY 689
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTEL++E+G YS++ GSLWDQGILP D+LKLLEK RG Y++V+ S L+W LR +I
Sbjct: 690 WASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGG-YVEVDRSAKLDWDALRAKI 748
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 749 AQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKRL 808
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+L I R+P +++ +YATAFE+SP W++EA S RQKWIDQ+QSL
Sbjct: 809 GLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQKWIDQAQSL 868
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
NIY++ SGKKL +TY LAWLRGLKTTYYLR+ SA +KS +
Sbjct: 869 NIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912
>gi|222112112|ref|YP_002554376.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
ebreus TPSY]
gi|221731556|gb|ACM34376.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
ebreus TPSY]
Length = 974
Score = 1059 bits (2739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/702 (67%), Positives = 594/702 (84%), Gaps = 1/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+++ ++ + Y E F +FI +G+DN+LL+P+L E
Sbjct: 212 IEKDPGYTYATARLLLHTIVREVLGRDVNPANMALAYAENFPQFIRQGVDNELLDPRLME 271
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL ERDLQF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+L E +R
Sbjct: 272 FDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALREDDR 331
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPD+L GI+ESIKENALLSK
Sbjct: 332 NARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDELEGIYESIKENALLSK 391
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LG+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 392 FAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESW 451
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLFSP DVPDLH+ +G
Sbjct: 452 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGLWTLFSPSDVPDLHDLYG 511
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE++YI YE + + G++ LFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 512 QAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 571
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS E VCNLGS+NL H+K+G +D KL+KT+ AMRMLDNV
Sbjct: 572 VGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLKDGGIDHDKLRKTVSTAMRMLDNV 631
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KAK SNLRHRPVGLG+MGFQD L+ ++IPY+S A++FAD SME +CYYAY
Sbjct: 632 IDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRIPYASDAAVEFADTSMEALCYYAY 691
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+AST+LA+E+G+YSSY GSLW QGILP DSL+LLE+ERG Y++V+ + L+W LR +I
Sbjct: 692 WASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQERGG-YVEVDRTTRLDWDMLRAKI 750
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNC+AIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++LK+
Sbjct: 751 AQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKQL 810
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+F G+L I R+P ++ +YATAFE++P W++EA + RQKWIDQ+QSL
Sbjct: 811 GLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEVAPTWLVEAAARRQKWIDQAQSL 870
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
NIY++ SGKKLDETYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 871 NIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHVEMST 912
>gi|407940658|ref|YP_006856299.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
KKS102]
gi|407898452|gb|AFU47661.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
KKS102]
Length = 979
Score = 1059 bits (2739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/703 (68%), Positives = 595/703 (84%), Gaps = 2/703 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKL-A 59
+EKDP Y+ TARLL++ I +EV G+++ Q D+ YK+YF FI KG+DN+LL+ +L
Sbjct: 214 IEKDPDYTYATARLLLHTIVREVLGRDVTQSDMGQAYKDYFPTFIQKGVDNELLDERLLK 273
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
+++L+ L AL ERDLQF+YLGL+ LYDRYFLH++ RIE+PQ FFMR+AMGL+LNE++
Sbjct: 274 QYDLNRLGAALKAERDLQFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGLALNETD 333
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
RE AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLS
Sbjct: 334 REARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLS 393
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLET
Sbjct: 394 KFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLET 453
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP +VPDLH+ F
Sbjct: 454 WHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLF 513
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G +FE++Y+ YE + G+IK K + A LWRKIL+MLFETGHPWITFKDACN+RSPQQ
Sbjct: 514 GADFEKAYVAYEEKAARGEIKPAKTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQ 573
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G++D KLKKTI +AMRMLDN
Sbjct: 574 HAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHIKDGQIDHEKLKKTITVAMRMLDN 633
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDINYYAV KA+ SNLRHRPVGLG+M FQD L+ ++IPY+S+EA++FAD+SME ICYYA
Sbjct: 634 VIDINYYAVNKARDSNLRHRPVGLGVMAFQDSLYALRIPYASQEAVEFADKSMEAICYYA 693
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
Y+ASTELA+E+G+YSSY GSLWD+GILP D+L +L K RG Y++V+ S +++W LR +
Sbjct: 694 YWASTELAKERGQYSSYKGSLWDRGILPFDTLDMLAKARGG-YVEVDRSSTMDWDALRKK 752
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I + GMRNSNCVAIAPTATISNIIGV ASIEP++ NL +KSNLSGEFT IN LV++LK+
Sbjct: 753 IAQDGMRNSNCVAIAPTATISNIIGVDASIEPSFGNLSVKSNLSGEFTVINSGLVRDLKR 812
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD+ MI +LK+F G+L I R+P D++ +Y+TAFE+ P W++EA S RQKWIDQ+QS
Sbjct: 813 LGLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVEPQWLVEAASRRQKWIDQAQS 872
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
LNIY++ SGKKLD+TYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 873 LNIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTQSATHVEMST 915
>gi|365093267|ref|ZP_09330334.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
NO-1]
gi|363414650|gb|EHL21798.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
NO-1]
Length = 980
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/702 (68%), Positives = 592/702 (84%), Gaps = 1/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+E+ Q + Y EYF +FI KG+DN LL+ +L +
Sbjct: 216 IEKDPDYTYATARLLLHTIVREVLGREVTQDGMGQAYIEYFPQFIKKGVDNDLLDERLMQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL +RDL+F+YLGL+ LYDRYFLH++ RIE+PQ FFMR+AMGL+LNE++R
Sbjct: 276 YDLQRLGAALKADRDLKFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGLALNETDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 336 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP +VPDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IK K I A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 ADFEKAYVAYEEKAARGEIKPAKTIQATDLWRKMLTMLFETGHPWITFKDACNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G++D KLKKTI +AMRMLDNV
Sbjct: 576 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHIKDGQIDHDKLKKTITVAMRMLDNV 635
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SNLRHRPVGLG+M FQD L+ ++IPY+S+EA++FAD+SME ICYYAY
Sbjct: 636 IDINYYAVKKARDSNLRHRPVGLGVMAFQDSLYELRIPYASQEAVEFADKSMEAICYYAY 695
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+YSSY GSLWD+GILP D+L +L + RG Y++V+ S +L+W LR +I
Sbjct: 696 WASTELAKERGKYSSYKGSLWDRGILPFDTLDMLAQARGG-YVEVDRSSTLDWDALRKKI 754
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
GMRNSNCVAIAPTATISNIIGV ASIEP++ NL +KSNLSGEFT IN LV++LK+
Sbjct: 755 ALDGMRNSNCVAIAPTATISNIIGVDASIEPSFGNLSVKSNLSGEFTIINGGLVRDLKRL 814
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ MI +LK+F G+L I R+P D++ +Y+TAFE+ P W++EA S RQKWIDQ+QSL
Sbjct: 815 GLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVEPQWLVEAASRRQKWIDQAQSL 874
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
NIY++ SGKKLD+TYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 875 NIYMAGASGKKLDDTYKLAWIRGLKTTYYLRTQSATHVEMST 916
>gi|124268398|ref|YP_001022402.1| ribonucleotide-diphosphate reductase subunit alpha [Methylibium
petroleiphilum PM1]
gi|124261173|gb|ABM96167.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
PM1]
Length = 971
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/710 (67%), Positives = 597/710 (84%), Gaps = 5/710 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y++ TARLL++ I++E+ G E+ ++ +Y +YF FI +G++ +LL+ +L +
Sbjct: 215 IEKDPAYTRATARLLLHTIRREILGGEVLHEEMQQRYADYFPGFIKQGVEAELLDERLMQ 274
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL +RDLQF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 275 YDLRRLGEALKADRDLQFDYLGLQTLYDRYFLHVRKARIELPQAFFMRVAMGLALNEVDR 334
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+E+IKENALLSK
Sbjct: 335 EARAIEFYEVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAIKENALLSK 394
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 395 FAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 454
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RVI+ WTLFSP PDLH+KFG
Sbjct: 455 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVIEGGDWTLFSPSTCPDLHDKFG 514
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y YE + G++KL+K++ A LWRK+LSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 515 IAFEQAYTAYEQKADRGELKLYKRVPAKDLWRKMLSMLFETGHPWITFKDACNVRSPQQH 574
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIRIAMRM 416
VG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G ++D KL+KT+ AMRM
Sbjct: 575 VGVVHSSNLCTEITLNTNGSEIAVCNLGSVNLAQHLMHGAEGLEIDHAKLRKTVSTAMRM 634
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAVKKA+ SNLRHRPVGLG+MGFQD L+ ++I Y+S++A+++AD+SME +C
Sbjct: 635 LDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDSLYQLRIAYASQQAVEYADRSMEAVC 694
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y+AY+ASTELAEE+GRYSSY GSLWD+GILP DSL LL ++RG Y+ V+ S SL+W L
Sbjct: 695 YHAYWASTELAEERGRYSSYKGSLWDRGILPIDSLDLLAEQRGG-YVDVDRSTSLDWDAL 753
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R RI++ GMRNSNCVAIAPTATISNIIGV ASIEP++ NL +KSNLSGEFT IN YLV++
Sbjct: 754 RARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNLSVKSNLSGEFTVINEYLVRD 813
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LKK GLWD+ M+ +LK+FDG+L +I R+P++L+ +YATAFE+ P W++EA + RQKWIDQ
Sbjct: 814 LKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAFEVEPTWLVEAAARRQKWIDQ 873
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+QSLNIY++ SGKKLD+TYKLAW RGLKTTYYLR++ A +A+KS + G
Sbjct: 874 AQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTVGATHAEKSTVKAG 923
>gi|395009426|ref|ZP_10392961.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp.
CF316]
gi|394312541|gb|EJE49684.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp.
CF316]
Length = 978
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/702 (68%), Positives = 589/702 (83%), Gaps = 1/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+E+ Q ++ Y EYF +FI KG+DN+LL+P+L
Sbjct: 217 IEKDPDYTYATARLLLHTIVREVLGREVTQAEMGQSYVEYFPQFIQKGVDNELLDPRLLT 276
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL +RDLQF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGLSLNE++R
Sbjct: 277 FDLARLGAALNADRDLQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGLSLNEADR 336
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPD L GI++SIKENALLSK
Sbjct: 337 EARAIEFYEILSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDHLEGIYDSIKENALLSK 396
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 397 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 456
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP DVPDLH+ FG
Sbjct: 457 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSDVPDLHDLFG 516
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y+ YE + G+IK K + A +WRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 517 TAFEKAYVAYEARAARGEIKPSKTVQATDMWRKMLTMLFETGHPWITFKDACNVRSPQQH 576
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G++D KL+KTI +AMRMLDNV
Sbjct: 577 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGQIDHAKLRKTITVAMRMLDNV 636
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV KA+ SNLRHRPVGLG+M FQD L+ ++IPY+S+ A++FAD+SME ICYYAY
Sbjct: 637 IDINYYAVNKARDSNLRHRPVGLGLMAFQDSLYELRIPYASQAAVEFADKSMEAICYYAY 696
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+Y+SY GSLWDQGILP D+L +L RG Y++V+ S +L+W LR +I
Sbjct: 697 WASTELAKERGQYTSYKGSLWDQGILPLDTLDMLATARGG-YVEVDRSATLDWDALRKKI 755
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGV ASIEP++ NL +KSNLSGEFT IN LV++LK+
Sbjct: 756 AQDGMRNSNCVAIAPTATISNIIGVDASIEPSFGNLSVKSNLSGEFTVINGGLVRDLKRL 815
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ MI +LK+F G+L I R+P D++ +Y+TAFE+ W++EA S RQKWIDQ+QSL
Sbjct: 816 GLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVDSQWLVEAASRRQKWIDQAQSL 875
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
NIY++ SGKKLD+TYKLAWLRGLKTTYYLR+ SA + + S
Sbjct: 876 NIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHVEMST 917
>gi|351729070|ref|ZP_08946761.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
radicis N35]
Length = 980
Score = 1056 bits (2732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/702 (68%), Positives = 588/702 (83%), Gaps = 1/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+E+ Q + Y EYF +FI KG+DN+LL+P+L
Sbjct: 216 IEKDPDYTYATARLLLHTIVREVLGREVTQDAMGQAYIEYFPQFIKKGVDNELLDPRLLT 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L AL +RDLQF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGLSLNE++R
Sbjct: 276 FDLARLGAALKADRDLQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGLSLNEADR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPD L GI++SIKENALLSK
Sbjct: 336 EARAIEFYEILSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDHLEGIYDSIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP DVPDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSDVPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE++Y+ YE + G+IK K + A +WRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 TAFEKAYVAYEQKAARGEIKPSKTVQATDMWRKMLTMLFETGHPWITFKDACNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G+LD KLKKTI +AMRMLDNV
Sbjct: 576 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHIKDGQLDHDKLKKTITVAMRMLDNV 635
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV KA+ SNLRHRPVGLG+M FQD L+ ++IPY+S+ A++FAD+SME ICYYAY
Sbjct: 636 IDINYYAVTKARDSNLRHRPVGLGVMAFQDSLYELRIPYASQAAVEFADKSMEAICYYAY 695
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+YSSY GSLWDQGILP D+L +L RG Y++V+ S +L+W LR +I
Sbjct: 696 WASTELAKERGQYSSYKGSLWDQGILPLDTLDMLATARGG-YVEVDRSATLDWDALRKKI 754
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNIIGV ASIEP++ NL +KSNLSGEFT IN LV++LK+
Sbjct: 755 AQDGMRNSNCVAIAPTATISNIIGVDASIEPSFGNLSVKSNLSGEFTVINGGLVRDLKRL 814
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ MI +LK+F G+L I R+P D++ +Y+TAFE+ W++EA S RQKWIDQ+QSL
Sbjct: 815 GLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVEAQWLVEAASRRQKWIDQAQSL 874
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
NIY++ SGKKLD+TYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 875 NIYMAGASGKKLDDTYKLAWIRGLKTTYYLRTQSATHVEMST 916
>gi|326315614|ref|YP_004233286.1| ribonucleoside-diphosphate reductase subunit alpha [Acidovorax
avenae subsp. avenae ATCC 19860]
gi|323372450|gb|ADX44719.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
avenae subsp. avenae ATCC 19860]
Length = 983
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/706 (67%), Positives = 591/706 (83%), Gaps = 5/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+++ D+ Y YF +FI KG+DN+LL+P+L +
Sbjct: 216 IEKDPDYTYATARLLLHTIVREVLGQDVVPADMGPAYAAYFPQFIQKGVDNELLDPRLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L AL RD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 276 YDLARLGAALDAGRDQQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 336 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP VPDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IK + + A LWRKIL+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 ADFEKAYVAYEEKAARGEIKPSRTLQATDLWRKILTMLFETGHPWITFKDACNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIRIAMRM 416
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G +LD KL+KTI AMRM
Sbjct: 576 AGVVHSSNLCTEITLNTSDAETAVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRM 635
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAV+KA+ SN+RHRPVGLG+M FQD L+ ++IPY+S+ A++FAD+SME IC
Sbjct: 636 LDNVIDINYYAVEKARNSNMRHRPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAIC 695
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYAY+ASTELA+E+G+YSSY GSLWD+GILP D+L LLEK RG Y++V+ + SL+W L
Sbjct: 696 YYAYWASTELAQERGKYSSYPGSLWDRGILPIDTLDLLEKARGG-YVEVDRATSLDWDAL 754
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +I + GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN YLV++
Sbjct: 755 RQKIARDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRD 814
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK+ GLWD+ M+ +LK+F G+L I R+P D++ +Y+TAFE++P W++EA S RQKWIDQ
Sbjct: 815 LKRLGLWDDVMVMDLKHFKGSLHPIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQ 874
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
+QSLNIY++ SGKKLDETYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 875 AQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMST 920
>gi|120609558|ref|YP_969236.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
citrulli AAC00-1]
gi|120588022|gb|ABM31462.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
citrulli AAC00-1]
Length = 983
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/706 (67%), Positives = 590/706 (83%), Gaps = 5/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+++ D+ Y YF +FI KG+DN+LL+P+L +
Sbjct: 216 IEKDPDYTYATARLLLHTIVREVLGQDVVPADMGPAYAAYFPQFIQKGVDNELLDPRLLQ 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL RD QF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 276 YDLVRLGAALDAGRDQQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 336 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP VPDLH+ FG
Sbjct: 456 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+IK + + A LWRKIL+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 ADFEKAYVAYEEKAARGEIKPSRTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIRIAMRM 416
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G +LD KL+KTI AMRM
Sbjct: 576 AGVVHSSNLCTEITLNTSDAETAVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRM 635
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAV+KA+ SN+RHRPVGLG+M FQD L+ ++IPY+S+ A++FAD+SME IC
Sbjct: 636 LDNVIDINYYAVEKARNSNMRHRPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAIC 695
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYAY+ASTELA+E+G+YSSY GSLWD+GILP D+L LLEK RG Y++V+ + +L+W L
Sbjct: 696 YYAYWASTELAQERGKYSSYPGSLWDRGILPIDTLDLLEKARGG-YVEVDRAATLDWDAL 754
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +I + GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN YLV++
Sbjct: 755 RQKIARDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRD 814
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK+ GLWD+ M+ +LK+F G+L I R+P D++ +Y+TAFE++P W++EA S RQKWIDQ
Sbjct: 815 LKRLGLWDDVMVMDLKHFKGSLHPIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQ 874
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
+QSLNIY++ SGKKLDETYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 875 AQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMST 920
>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 1306
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/706 (68%), Positives = 586/706 (83%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL + I +EV G+++ Q D+ Y +YF FI +GI +LL+ KL +
Sbjct: 229 IEKDPDYTYATARLLFHTISREVLGRDVAQADMQEAYADYFPGFIKRGIAAELLDEKLQQ 288
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L +AL RDLQF+YLGL+ LYDRYFLH RIE+PQ FFMR+AMGLSLNE +R
Sbjct: 289 FDLKRLGSALKAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGLSLNEIDR 348
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 349 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 408
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 409 FAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 468
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++K TWTLFSP +VPDLH+ FG
Sbjct: 469 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFG 528
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE++Y+ YE + G+IK + + A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 529 AEFEKAYVAYEEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQH 588
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS E VCNLGS+NL H+K+G LD KLK+TI AMRMLDNV
Sbjct: 589 AGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTAMRMLDNV 648
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAVKKA+ SN+RHRPVGLG+M FQD L+ ++IPY+S A++FADQSME I YYAY
Sbjct: 649 IDINYYAVKKARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSMEAISYYAY 708
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+AST+LA E+G+Y SY GSLWD+G+LP D+L +L RG Y++V+ S +L+W LRN+I
Sbjct: 709 WASTDLARERGKYHSYKGSLWDKGVLPPDTLDMLANARGG-YVEVDRSSTLDWNALRNKI 767
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
GMRNSNCVAIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN YLV++LK+
Sbjct: 768 AADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLVRDLKRL 827
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD+ M+ +LK+FDG+LS I R+P +++++YATAFE+ W++EA + RQKWIDQ+QSL
Sbjct: 828 GLWDDVMVMDLKHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWIDQAQSL 887
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SGKKLDETYKLAWLRGLKTTYYLR++SA +A+KS G
Sbjct: 888 NIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMSATHAEKSTVTAG 933
>gi|89902116|ref|YP_524587.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodoferax
ferrireducens T118]
gi|89346853|gb|ABD71056.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
T118]
Length = 981
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/715 (67%), Positives = 588/715 (82%), Gaps = 10/715 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL + I EV G+++ Q D+ Y +YF +FI KGID++LL+ +L +
Sbjct: 214 IEKDPDYTYATARLLFHTIANEVLGRDVVQADMAQAYVDYFPQFIKKGIDHELLDERLQQ 273
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL ERDL+F+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGLSL E +R
Sbjct: 274 FDLQRLGAALKAERDLKFDYLGLQTLYDRYFLHVGKARIELPQAFFMRVAMGLSLGEIDR 333
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 334 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 393
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LG+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 394 FAGGLGNDWTRVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 453
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV++K WTLFSP +VPDLH+KFG
Sbjct: 454 HLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMRRVMEKGQWTLFSPNNVPDLHDKFG 513
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE + G+I+ + + A LWRK+L+MLFETGHPWITFKDACNIRSPQQH
Sbjct: 514 ADFEKAYVAYEEKAARGEIRPARTVQAADLWRKMLTMLFETGHPWITFKDACNIRSPQQH 573
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK---------LDPIKLKKTIR 411
VG++HSSNLCTEITLNTS E VCNLGS+NL H+KN LD KL+KTI
Sbjct: 574 VGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKNAPAGSADGAKVLDHAKLQKTIT 633
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
AMRMLDNVIDIN+YAVKKA+ +N+RHRPVGLG+M FQD L+ ++IPY+S A+ FAD S
Sbjct: 634 TAMRMLDNVIDINFYAVKKARDANMRHRPVGLGVMAFQDSLYELRIPYASDAAVAFADTS 693
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
ME ICYYAY+ASTELA E+G+Y+SY GSLWDQGILP D+L +L +ERG Y++V+ S +L
Sbjct: 694 MEAICYYAYWASTELARERGQYTSYKGSLWDQGILPIDTLDMLARERGG-YVEVDRSSTL 752
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W+ LR +I K GMRNSNC AIAPTATISNIIGV ASIEP + NL +KSNLSGEFT IN
Sbjct: 753 DWEALRKKIAKDGMRNSNCTAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTIINS 812
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LK+ GLWD+ M+ +LK+FDG+L+ I R+P D++ +YATAFEI W++EA + RQ
Sbjct: 813 YLVQDLKRLGLWDDVMVMDLKHFDGSLNPIDRVPADVKALYATAFEIETRWLVEAAARRQ 872
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
KWIDQ+QSLNIY+ SGKKLD+TYKLAW+RGLKTTYYLR++SA +A+KS G
Sbjct: 873 KWIDQAQSLNIYMGGASGKKLDDTYKLAWIRGLKTTYYLRTMSATHAEKSTVTAG 927
>gi|253997286|ref|YP_003049350.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
mobilis JLW8]
gi|253983965|gb|ACT48823.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
mobilis JLW8]
Length = 938
Score = 1052 bits (2720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/753 (64%), Positives = 607/753 (80%), Gaps = 18/753 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P Y+ VTARL + ++ EV G+ + ++ Y EYF ++I GID LL+P+LA+
Sbjct: 200 IETEPAYNYVTARLQLDLVRAEVLGERVSHAEMDAHYAEYFPRYIKIGIDADLLDPRLAQ 259
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+NAL+ ERD QF YLG++ LYDRYFLHIE RIE+PQ FFMR+AMGL++NE +R
Sbjct: 260 FDLDKLANALVKERDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMRVAMGLAINEIDR 319
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LS+F+FM STPTLFN+GT+ SQLSSCYL+TV DDL GI++ IKENALL K
Sbjct: 320 EARAIEFYNVLSTFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGIYQGIKENALLQK 379
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNG+SQGVIPFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 380 YAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGAVCGYLETW 439
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGDDRRRTHDMN A W+PDLFM+RV ++ WTLFSP DVPDLH+K+G
Sbjct: 440 HLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEQGEWTLFSPSDVPDLHDKYG 499
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE++Y+ YE + G+IKLFK++ A+ +WRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 500 KAFEKAYVEYERRADTGEIKLFKRVPAIQMWRKMLSMLFETGHPWITFKDPCNIRSPQQH 559
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK----NGKLDPIKLKKTIRIAMRM 416
VG++HSSNLCTEITLNTS EI VCNLGS+NL H+K N +LD KL+ TI++ MRM
Sbjct: 560 VGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLLQHLKEVNGNLELDNDKLQATIKVGMRM 619
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNV+DIN+Y V KA+ SN RHRPVG+GIMGFQ+CLH M+IPY+S +A++FAD++MEM+C
Sbjct: 620 LDNVVDINFYPVGKARNSNTRHRPVGMGIMGFQNCLHAMRIPYASMDAVEFADRAMEMVC 679
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y AY+AST LAEE+G YSS+ GSLWDQGILP D+L LLE ERG ++V+ S++L+W L
Sbjct: 680 YNAYWASTVLAEERGPYSSFKGSLWDQGILPLDTLNLLEAERGGN-VEVDRSKTLDWDAL 738
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
RNRI+K GMRNSNCVAIAPTATISNI+GVSASIEP Y+NL++KSNLSGEFT +N LV +
Sbjct: 739 RNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTIVNEQLVND 798
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK +GLWD M+++LKYFDG+L+ I R+P DL+++YATAF++ P+W+IEA + RQKWIDQ
Sbjct: 799 LKARGLWDTVMVSDLKYFDGSLAPIERVPADLKQLYATAFDVDPSWLIEAAARRQKWIDQ 858
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEIS 716
+QSLN+Y + SGKKL++TY LAW RGLKTTYYLRS+ A A+KS G E++
Sbjct: 859 AQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSLGATAAEKSTGSGG-------ELN 911
Query: 717 IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ E K C I D +CESCQ
Sbjct: 912 AVSAHTTAPE-PAPKMCSI-----DNPDCESCQ 938
>gi|121608467|ref|YP_996274.1| ribonucleotide-diphosphate reductase subunit alpha
[Verminephrobacter eiseniae EF01-2]
gi|121553107|gb|ABM57256.1| ribonucleoside-diphosphate reductase, alpha subunit
[Verminephrobacter eiseniae EF01-2]
Length = 968
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/706 (66%), Positives = 583/706 (82%), Gaps = 1/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YS TARLL++ I +EV G ++ Q + + Y +YF +FI KG+DN LL+ +L +
Sbjct: 212 IEKDPDYSYATARLLLHTIVREVLGSDVPQAQMALAYGDYFPRFIKKGVDNGLLDERLLQ 271
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L A+ ERDL+F+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+LNE R
Sbjct: 272 YDLQRLGAAIRAERDLKFDYLGLQTLYDRYFLHVRKTRIELPQVFFMRVAMGLALNEVER 331
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 332 EARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSK 391
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS I GTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 392 FAGGLGNDWTRVRALGSYIAGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 451
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM RV++K WTLFSP VPDLH FG
Sbjct: 452 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMHRVMEKGHWTLFSPSSVPDLHELFG 511
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ YE Q G I + + A LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 512 ADFEKAYVAYEEQAARGAIGPARTVQATDLWRKMLTMLFETGHPWITFKDACNLRSPQQH 571
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++HSSNLCTEITLNTS +E VCNLGS+NL H+K+G++D KL++TI +AMRMLDNV
Sbjct: 572 AGVVHSSNLCTEITLNTSDSETAVCNLGSVNLLQHLKDGQIDHDKLRQTITVAMRMLDNV 631
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KA+ SNLRHRPVGLG+M FQDCL+ ++IPY+S+ A++FADQSME ICYYAY
Sbjct: 632 IDINYYAVRKARDSNLRHRPVGLGVMAFQDCLYELRIPYASQAAVEFADQSMEAICYYAY 691
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA+E+G+Y SY+GSLW++G LP D+L LL + RG YL+V+ S L+W LR +I
Sbjct: 692 WASTELAKERGKYLSYEGSLWERGQLPLDTLDLLAQARGD-YLQVDRSSRLDWDALRQKI 750
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSNCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN LV++LK+
Sbjct: 751 AQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINAGLVRDLKRL 810
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE MI +LK+F G+L I R+P D++ +Y+TAFE+ P W++EA S RQKWIDQ+QSL
Sbjct: 811 GLWDEVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVDPQWLVEAASRRQKWIDQAQSL 870
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
NIY++ SG+KLDETYKLAW+RGLKTTYYLR+ SA + + S G
Sbjct: 871 NIYMAGASGRKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVNTG 916
>gi|347539724|ref|YP_004847149.1| ribonucleoside-diphosphate reductase subunit alpha
[Pseudogulbenkiania sp. NH8B]
gi|345642902|dbj|BAK76735.1| ribonucleoside-diphosphate reductase, alpha subunit
[Pseudogulbenkiania sp. NH8B]
Length = 949
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/752 (64%), Positives = 606/752 (80%), Gaps = 9/752 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y VTARLL+ I+ E+ G+ + Q ++ Y YF + I KGI +LL+ +L E
Sbjct: 204 IEQDPAYDYVTARLLLNNIRLEILGEAVSQEEMGECYVSYFPQAIKKGIAAELLDERLGE 263
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL RDLQF YLGL+ LYDRYFLH+ G RIEMPQ F+MR+AMGL+LNE R
Sbjct: 264 YDLKKLGAALDASRDLQFGYLGLQTLYDRYFLHVNGTRIEMPQAFYMRVAMGLALNEVER 323
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+T+ DDL GI+E IKENALLSK
Sbjct: 324 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTIADDLDGIYEGIKENALLSK 383
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR++GS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 384 FAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 443
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV+ + WTL SP + PDLH+ G
Sbjct: 444 HLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLSPSECPDLHDLVG 503
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE+ Y YE G+IK+ K+I AL LWRK+L+MLFETGHPWITFKD CNIRSPQ H
Sbjct: 504 AAFEKRYQEYEAMAARGEIKVSKRIPALSLWRKMLTMLFETGHPWITFKDPCNIRSPQGH 563
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDN 419
+G++HSSNLCTEITLNT+ +EI VCNLGS+NL HM+ +G LD KL++TIRIAMRMLDN
Sbjct: 564 MGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLARHMQADGTLDGAKLQRTIRIAMRMLDN 623
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y VKKA+ SNL+HRPVG+GIMGFQDCLH+ +IPY+S+EA++FAD+SME++ Y+A
Sbjct: 624 VIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHMKRIPYASQEAVEFADESMELVAYHA 683
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
Y+AS+ELA+E+GRY SY GSLWD+G+LP DS+ LL ERG YL V+ +E L+W KLR R
Sbjct: 684 YWASSELAQERGRYPSYKGSLWDRGVLPHDSINLLAAERGG-YLDVDRTERLDWNKLRER 742
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK+ GMRNSNC+AIAPTATI+NIIGVSASIEPTY+NL +KSNLSGEFT N +LV++LKK
Sbjct: 743 IKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFTVTNEHLVRDLKK 802
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWDE M+++LKYFDG+L +I RIP +L+ IYATAFE+ P W+++A S RQKWIDQ+QS
Sbjct: 803 LGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLVDAASRRQKWIDQAQS 862
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIK 718
LN+Y++ SGKKLDE YK AW+RGLKTTYYLR+++A A+KS G +++V+ ++
Sbjct: 863 LNLYMAGASGKKLDELYKYAWVRGLKTTYYLRTLAATSAEKSTGRGGELNAVSATTPAVS 922
Query: 719 GYNK-NLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + K C I D +CE+CQ
Sbjct: 923 AAPEVDNTPATDAKFCSI-----DNPDCEACQ 949
>gi|224825452|ref|ZP_03698557.1| ribonucleoside-diphosphate reductase, alpha subunit
[Pseudogulbenkiania ferrooxidans 2002]
gi|224602373|gb|EEG08551.1| ribonucleoside-diphosphate reductase, alpha subunit
[Pseudogulbenkiania ferrooxidans 2002]
Length = 949
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/752 (64%), Positives = 606/752 (80%), Gaps = 9/752 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y VTARLL+ I+ E+ G+ + Q ++ Y YF + I KGI +LL+ +L E
Sbjct: 204 IEQDPAYDYVTARLLLNNIRLEILGEAVSQEEMGECYVSYFPQAIKKGIAAELLDERLGE 263
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL RDLQF YLGL+ LYDRYFLH+ G RIEMPQ F+MR+AMGL+LNE R
Sbjct: 264 YDLKKLGAALDASRDLQFGYLGLQTLYDRYFLHVNGTRIEMPQAFYMRVAMGLALNEVER 323
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+T+ DDL GI+E IKENALLSK
Sbjct: 324 EARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTIADDLDGIYEGIKENALLSK 383
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR++GS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 384 FAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 443
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV+ + WTL SP + PDLH+ G
Sbjct: 444 HLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLSPSECPDLHDLVG 503
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE+ Y YE G+IK+ K+I AL LWRK+L+MLFETGHPWITFKD CNIRSPQ H
Sbjct: 504 AAFEKRYQEYEAMAARGEIKVSKRIPALSLWRKMLTMLFETGHPWITFKDPCNIRSPQGH 563
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDN 419
+G++HSSNLCTEITLNT+ +EI VCNLGS+NL HM+ +G LD KL++TIRIAMRMLDN
Sbjct: 564 MGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLARHMQADGTLDGAKLQRTIRIAMRMLDN 623
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y VKKA+ SNL+HRPVG+GIMGFQDCLH+ +IPY+S+EA++FAD+SME++ Y+A
Sbjct: 624 VIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHMKRIPYASQEAVEFADESMELVAYHA 683
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
Y+AS+ELA+E+GRY SY GSLWD+G+LP DS+ LL ERG YL V+ +E L+W KLR R
Sbjct: 684 YWASSELAQERGRYPSYKGSLWDRGVLPHDSINLLAAERGG-YLDVDRTERLDWNKLRER 742
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK+ GMRNSNC+AIAPTATI+NIIGVSASIEPTY+NL +KSNLSGEFT N +LV++LKK
Sbjct: 743 IKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFTVTNEHLVRDLKK 802
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWDE M+++LKYFDG+L +I RIP +L+ IYATAFE+ P W+++A S RQKWIDQ+QS
Sbjct: 803 LGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLVDAASRRQKWIDQAQS 862
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIK 718
LN+Y++ SGKKLDE YK AW+RGLKTTYYLR+++A A+KS G +++V+ ++
Sbjct: 863 LNLYMAGASGKKLDELYKYAWVRGLKTTYYLRTLAATSAEKSTGRGGELNAVSATTPAVS 922
Query: 719 GYNK-NLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + K C I D +CE+CQ
Sbjct: 923 AAPEVDNTPATDAKFCSI-----DNPDCEACQ 949
>gi|313200885|ref|YP_004039543.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
sp. MP688]
gi|312440201|gb|ADQ84307.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
sp. MP688]
Length = 937
Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/753 (63%), Positives = 601/753 (79%), Gaps = 12/753 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARL + ++ EV G+ + + +Y EYF ++I GI +LL+ +LA+
Sbjct: 193 IEREPAYNYVTARLQLDLVRAEVLGEAVSHTAMAQRYAEYFPQYIKAGIAAELLDERLAQ 252
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+LS L++ L+ +RDLQF YLGL+ LYDRYFLHIE RIE+PQ FFMR+AMGL++NE +R
Sbjct: 253 FDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFMRVAMGLAINEIDR 312
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY++LSSF+FM STPTLFNSGT SQLSSCYL+TV DDL GI+++IKENALL K
Sbjct: 313 ESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDGIYQAIKENALLQK 372
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGVIPFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 373 FAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGAVCGYLESW 432
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+EEF++LRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLFSP DVPDLH+ +G
Sbjct: 433 HLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLFSPSDVPDLHDLYG 492
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE +Y YE + G+IKLFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 493 KAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 552
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK----LDPIKLKKTIRIAMRM 416
VG++HSSNLCTEITLNTS+ EI VCNLGS+NL H+K LD KL TIR+AMRM
Sbjct: 553 VGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQTKLAATIRVAMRM 612
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNV+DIN+YAV KA+ SN RHRPVGLGIMGFQD LH M++PY+S A++FAD++ME +C
Sbjct: 613 LDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASAAAVEFADRAMEAVC 672
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y AY AS+ LAEE+G YSS+ GSLWDQGILP D+L LL + RG + ++V+ S +L+W L
Sbjct: 673 YNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQ-VEVDRSRTLDWDSL 731
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R RI++ GMRNSNCVAIAPTATISNI+GVSASIEP Y+NL++KSNLSGEFT +N LV++
Sbjct: 732 RQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTVVNEQLVQD 791
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK +GLWDE MIA++KY+DG+L+ I R+P DL+++YATAFE+ P W++EA + RQKWIDQ
Sbjct: 792 LKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLVEAAARRQKWIDQ 851
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEIS 716
+QSLN+Y + SGKKL++ Y LAWLRGLKTTYYLRS+ A A+KS + G +N +
Sbjct: 852 AQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKSTGQGG--ELNAVSSA 909
Query: 717 IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ K+CLI D +CE+CQ
Sbjct: 910 LPAVAAATNAEPEPKQCLI-----DDPDCEACQ 937
>gi|319764327|ref|YP_004128264.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus
denitrificans BC]
gi|330826375|ref|YP_004389678.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus
denitrificans K601]
gi|317118888|gb|ADV01377.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
denitrificans BC]
gi|329311747|gb|AEB86162.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
denitrificans K601]
Length = 970
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/706 (67%), Positives = 587/706 (83%), Gaps = 5/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+++ + Y F +FI KG+DN+LL+P+L +
Sbjct: 213 IEKDPGYTYATARLLLHTIVREVLGQDVAPAGMAAAYAANFPQFIRKGVDNELLDPRLLD 272
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL RDLQF+YLGL+ LYDRYFLH++ RIE+PQ FFMR+AMGL+L E +
Sbjct: 273 FDLQRLGQALKAGRDLQFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGLALREGDP 332
Query: 121 EKC----AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
+ AI+FY LLSSF+FM STPTLFNSGT+RSQLSSCYL+TVPD+L GI+ESIKENA
Sbjct: 333 KTTGSARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDELGGIYESIKENA 392
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LLSK+AGGLGNDWT+VR+LG+ IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAY
Sbjct: 393 LLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAY 452
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE+WH+D+EEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV+ K WTLFSP DVPDLH
Sbjct: 453 LESWHLDVEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFSPSDVPDLH 512
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ FE +Y YE + G+++LFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRS
Sbjct: 513 DLYGQAFERAYTAYEAKVDSGELQLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRS 572
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQQHVG++HSSNLCTEITLNTS E VCNLGS+NL H+K+G +D KL+KT+ AMRM
Sbjct: 573 PQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHLKDGAIDHDKLRKTVSTAMRM 632
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAV KA+ SNLRHRPVGLG+MGFQD L+ ++IPYSS A+ FAD+SME IC
Sbjct: 633 LDNVIDINYYAVDKARDSNLRHRPVGLGLMGFQDALYELRIPYSSDAAVTFADESMEAIC 692
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYAY+ASTELA E+G YSSY+GSLW +GILP DSL+LL KERG Y++V+ + L+W L
Sbjct: 693 YYAYWASTELARERGTYSSYEGSLWSKGILPLDSLELLAKERGG-YVEVDRTTRLDWDAL 751
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R++I + GMRNSNC+AIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN+YLV++
Sbjct: 752 RSKITQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRD 811
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LKK GLWD+ M+ +LK+F G+L I R+P +++ +YATAFE++P W++EA + RQKWIDQ
Sbjct: 812 LKKLGLWDDVMLMDLKHFKGSLHAIDRVPQNVKALYATAFEVAPAWLVEAAARRQKWIDQ 871
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
+QSLNIY++ SGKKLDETYKLAW+RGLKTTYYLR+ SA + + S
Sbjct: 872 AQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMST 917
>gi|451811737|ref|YP_007448192.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|451776895|gb|AGF47894.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 940
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/754 (66%), Positives = 605/754 (80%), Gaps = 16/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ +TARLL++ I+KEV GKE+ D+ +YKE F FI KGI + LL+P +
Sbjct: 198 IEKEPAYNYITARLLLHTIRKEVLGKELNHEDMATEYKEAFESFIKKGISSGLLSPNMGS 257
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L NAL RDL+F YLGL+ LYDRYFLHI RIE+PQ FFMR+AMG++L E+ +
Sbjct: 258 YDLKKLGNALDHNRDLKFKYLGLQTLYDRYFLHINNTRIELPQIFFMRVAMGIALKENYK 317
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LSSF+FM STPTLFNSGT SQ+SSCYL+TVPD L GI+++IKENALL+K
Sbjct: 318 EEKAIEFYEILSSFDFMSSTPTLFNSGTKHSQMSSCYLTTVPDSLEGIYDAIKENALLAK 377
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S I GTNG S GV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 378 YAGGLGNDWTPVRALRSHINGTNGESLGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 437
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV + WTLFSP D PDLH+K+G
Sbjct: 438 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVHENKEWTLFSPSDCPDLHDKYG 497
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE SY YE +T G+IKLFKKISA+ LWRK+LSMLFETGHPWI FKD CNIRSPQQH
Sbjct: 498 KEFEISYTDYEKKTISGEIKLFKKISAVILWRKMLSMLFETGHPWIAFKDPCNIRSPQQH 557
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG+IHSSNLCTEITLNTS +EI VCNLGS+NL H+K K LD KL+KT+ IAMR
Sbjct: 558 VGVIHSSNLCTEITLNTSDSEIAVCNLGSVNLVNHLKESKNGNLELDLDKLQKTVNIAMR 617
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDN+IDINYYAV KAK +N +HRPVGLG+MGFQDCLHIMKIPYSS+EA+ F+D+S E +
Sbjct: 618 MLDNIIDINYYAVSKAKTANEKHRPVGLGLMGFQDCLHIMKIPYSSQEAVSFSDKSTEAL 677
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY AS+ L++E+GRYSS+DGSLW +GI+P DSL+LL KERG YL ++ S SL+W
Sbjct: 678 CYYAYLASSNLSKERGRYSSFDGSLWSKGIMPHDSLELLLKERGD-YLDIDNSTSLDWNS 736
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+ I K GMRNSNCVAIAPTATISNIIGVSASIEPT++NL++KSNLSGEFT IN YLV+
Sbjct: 737 LRSHILKHGMRNSNCVAIAPTATISNIIGVSASIEPTFQNLYVKSNLSGEFTIINEYLVE 796
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK LWD+ I++LKYFDG+LS+I RIP+ ++ IY TAFEI PN +IE + RQKWID
Sbjct: 797 DLKKLDLWDQVTISDLKYFDGSLSKIDRIPNFIKTIYKTAFEIEPNCLIECAAKRQKWID 856
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKK+DETYKLAW +GLKTTYYLR++ A +KS G L+ +
Sbjct: 857 QAQSLNIYMNGASGKKIDETYKLAWTKGLKTTYYLRTLGATSVEKSTGNGG----ELNSV 912
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
SI N + ++ K C I + N ECE CQ
Sbjct: 913 SIA--NNSTEDTK--PTCSIGN--NSYEECEVCQ 940
>gi|429462957|ref|YP_007184420.1| ribonucleoside-diphosphate reductase subunit alpha [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|429338471|gb|AFZ82894.1| ribonucleoside-diphosphate reductase subunit alpha [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
Length = 951
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/754 (66%), Positives = 605/754 (80%), Gaps = 16/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ +TARLL++ I+KEV GKE+ D+ +YKE F FI KGI + LL+P +
Sbjct: 209 IEKEPAYNYITARLLLHTIRKEVLGKELNHEDMATEYKEAFESFIKKGISSGLLSPNMGS 268
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L NAL RDL+F YLGL+ LYDRYFLHI RIE+PQ FFMR+AMG++L E+ +
Sbjct: 269 YDLKKLGNALDHNRDLKFKYLGLQTLYDRYFLHINNTRIELPQIFFMRVAMGIALKENYK 328
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LSSF+FM STPTLFNSGT SQ+SSCYL+TVPD L GI+++IKENALL+K
Sbjct: 329 EEKAIEFYEILSSFDFMSSTPTLFNSGTKHSQMSSCYLTTVPDSLEGIYDAIKENALLAK 388
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S I GTNG S GV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 389 YAGGLGNDWTPVRALRSHINGTNGESLGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 448
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV + WTLFSP D PDLH+K+G
Sbjct: 449 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVHENKEWTLFSPSDCPDLHDKYG 508
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE SY YE +T G+IKLFKKISA+ LWRK+LSMLFETGHPWI FKD CNIRSPQQH
Sbjct: 509 KEFEISYTDYEKKTISGEIKLFKKISAVILWRKMLSMLFETGHPWIAFKDPCNIRSPQQH 568
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKTIRIAMR 415
VG+IHSSNLCTEITLNTS +EI VCNLGS+NL H+K K LD KL+KT+ IAMR
Sbjct: 569 VGVIHSSNLCTEITLNTSDSEIAVCNLGSVNLVNHLKESKNGNLELDLDKLQKTVNIAMR 628
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDN+IDINYYAV KAK +N +HRPVGLG+MGFQDCLHIMKIPYSS+EA+ F+D+S E +
Sbjct: 629 MLDNIIDINYYAVSKAKTANEKHRPVGLGLMGFQDCLHIMKIPYSSQEAVSFSDKSTEAL 688
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY AS+ L++E+GRYSS+DGSLW +GI+P DSL+LL KERG YL ++ S SL+W
Sbjct: 689 CYYAYLASSNLSKERGRYSSFDGSLWSKGIMPHDSLELLLKERGD-YLDIDNSTSLDWNS 747
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+ I K GMRNSNCVAIAPTATISNIIGVSASIEPT++NL++KSNLSGEFT IN YLV+
Sbjct: 748 LRSHILKHGMRNSNCVAIAPTATISNIIGVSASIEPTFQNLYVKSNLSGEFTIINEYLVE 807
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK LWD+ I++LKYFDG+LS+I RIP+ ++ IY TAFEI PN +IE + RQKWID
Sbjct: 808 DLKKLDLWDQVTISDLKYFDGSLSKIDRIPNFIKTIYKTAFEIEPNCLIECAAKRQKWID 867
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKK+DETYKLAW +GLKTTYYLR++ A +KS G L+ +
Sbjct: 868 QAQSLNIYMNGASGKKIDETYKLAWTKGLKTTYYLRTLGATSVEKSTGNGG----ELNSV 923
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
SI N + ++ K C I + N ECE CQ
Sbjct: 924 SIA--NNSTEDTK--PTCSIGN--NSYEECEVCQ 951
>gi|451812462|ref|YP_007448916.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778364|gb|AGF49312.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 954
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/755 (65%), Positives = 609/755 (80%), Gaps = 22/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ VTAR+L++ I++EV G+E ++ Y EYF+KFI G+ +L+ L
Sbjct: 216 IEKEPSYNYVTARILLHTIRREVLGRETSHEEMYKNYSEYFTKFIKLGVKGGILSSDLEN 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L LL NA+ RDL F YLGL+ LYDRYFLH++G RIE+PQ FFMR+AMG+++ E ++
Sbjct: 276 YDLDLLGNAIDASRDLNFKYLGLQTLYDRYFLHLDGKRIELPQIFFMRVAMGIAIREQDK 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
+ AI+FYN+LSSF+FM STPTLFNSGT +Q+SSCYL+TVPD+L GI+ESIKENALL+K
Sbjct: 336 NQKAIEFYNVLSSFDFMSSTPTLFNSGTKHAQMSSCYLTTVPDNLEGIYESIKENALLAK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN + W+PDLFMKRV++ WTLFSP D PDLH K+G
Sbjct: 456 HLDIEEFLELRKNTGDERRRTHDMNTSNWIPDLFMKRVMENKDWTLFSPSDCPDLHEKYG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K+FE++Y YE +T G+IKLFKKI A+ LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 516 KDFEQAYNKYETKTINGEIKLFKKIPAVSLWRKMLSMLFETGHPWITFKDTCNVRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-----NGKLDPIKLKKTIRIAMR 415
+G+IHSSNLCTEITLNT++ EI VCNLGSINL HMK + +LD KL+KT IAMR
Sbjct: 576 IGVIHSSNLCTEITLNTNETEIAVCNLGSINLNNHMKISNSNSFELDLKKLQKTTTIAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDN+IDINYYAV KAK SN +HRPVGLGIMGFQDCLH+M+I Y+S EAI FAD+SME I
Sbjct: 636 MLDNIIDINYYAVLKAKQSNEKHRPVGLGIMGFQDCLHMMRISYASNEAIDFADKSMEAI 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYY+Y AS+ LA+E+G+YSS+ GSLW GILPQD++K+LEKERG Y++++ S L+W+
Sbjct: 696 CYYSYLASSNLAKERGKYSSFKGSLWSHGILPQDTIKMLEKERGG-YIEMDQSSQLDWEY 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LRN I + GMRNSNCVAIAPTATISNIIGVSASIEPT++NL++KSNLSGEFT IN +LV
Sbjct: 755 LRNHILEHGMRNSNCVAIAPTATISNIIGVSASIEPTFQNLYVKSNLSGEFTIINEFLVN 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK +WDE M++++KYFDG+LS+I RIP ++R +Y TAFEI P W++E S RQKWID
Sbjct: 815 DLKKLNIWDEVMVSDIKYFDGSLSRIDRIPQNIRDLYKTAFEIQPEWLVECASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLNIY++ SGKKLDETYKLAW RGLKTTYYLR++ A +KS + G ++SV ++E
Sbjct: 875 QAQSLNIYMAGASGKKLDETYKLAWTRGLKTTYYLRAMGATSTEKSTGQGGELNSVIINE 934
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ C IN I+ ECE CQ
Sbjct: 935 -------------DRSRTCQIN--ISSDQECEVCQ 954
>gi|253998798|ref|YP_003050861.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
glucosetrophus SIP3-4]
gi|253985477|gb|ACT50334.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
glucosetrophus SIP3-4]
Length = 937
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/753 (63%), Positives = 602/753 (79%), Gaps = 12/753 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARL + ++ EV G+ + + +Y EYF ++I GI +LL+ +LA+
Sbjct: 193 IEREPAYNYVTARLQLDLVRAEVLGEAVSHTAMAQRYAEYFPQYIKTGIAAELLDERLAQ 252
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+LS L++ L+ +RDLQF YLGL+ LYDRYFLHIE RIE+PQ FFMR+AMGL++NE +R
Sbjct: 253 FDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFMRVAMGLAINEIDR 312
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY++LSSF+FM STPTLFNSGT SQLSSCYL+TV DDL GI+++IKENALL K
Sbjct: 313 ESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDGIYQAIKENALLQK 372
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGVIPFLKVVND AVAVNQGGKRKGA+C YLE+W
Sbjct: 373 FAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGAVCGYLESW 432
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+EEF++LRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLFSP DVPDLH+ +G
Sbjct: 433 HLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLFSPSDVPDLHDLYG 492
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE +Y YE + G+IKLFK++ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 493 KAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 552
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK----LDPIKLKKTIRIAMRM 416
VG++HSSNLCTEITLNTS+ EI VCNLGS+NL H+K LD KL TIR+AMRM
Sbjct: 553 VGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQAKLAATIRVAMRM 612
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNV+DIN+YAV KA+ SN RHRPVGLGIMGFQD LH M++PY+S A++FAD++ME +C
Sbjct: 613 LDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASSAAVEFADRAMEAVC 672
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y AY AS+ LAEE+G YSS+ GSLWDQGILP D+L LL + RG + ++V+ S +L+W L
Sbjct: 673 YNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQ-VEVDRSSTLDWDSL 731
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R RI++ GMRNSNCVAIAPTATISNI+GVSASIEP Y+NL++KSNLSGEFT +N LV++
Sbjct: 732 RQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTVVNEQLVQD 791
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK +GLWDE MIA++KY+DG+L+ I R+P DL+++YATAFE+ P W++EA + RQKWIDQ
Sbjct: 792 LKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLVEAAARRQKWIDQ 851
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEIS 716
+QSLN+Y + SGKKL++ Y LAWLRGLKTTYYLRS+ A A+KS + G + +
Sbjct: 852 AQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKSTGQGGELNAVSSGLP 911
Query: 717 IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + + K+CLI D CE+CQ
Sbjct: 912 VSAASPSAE--PEPKQCLI-----DDPGCEACQ 937
>gi|451936694|ref|YP_007460548.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777617|gb|AGF48592.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 954
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/754 (65%), Positives = 609/754 (80%), Gaps = 20/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ VTAR+L++ I++EV GKEI ++ Y EYF FI G+ +L+P L
Sbjct: 216 IEKEPSYNYVTARILLHTIRREVLGKEIFHEEMYKNYAEYFHNFIKLGVKGGVLSPDLEN 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+LL NA+ +RDL F YLGL+ LYDRYFLH++G RIE+PQ FFMR+AMG+++ E ++
Sbjct: 276 YDLALLGNAIDADRDLNFKYLGLQTLYDRYFLHMDGKRIELPQVFFMRVAMGIAIKERDK 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
+ AI+FY +LSSF+FM STPTLFNSGT +Q+SSCYL+TVPD+L GI++SIKENALL+K
Sbjct: 336 NQKAIEFYKILSSFDFMSSTPTLFNSGTKHAQMSSCYLTTVPDNLEGIYDSIKENALLAK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND A+AVNQGGKRKGA+C YLETW
Sbjct: 396 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAIAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN + W+PDLFMKRV++ WTLFSP D PDLH K+G
Sbjct: 456 HLDIEEFLELRKNTGDERRRTHDMNTSNWIPDLFMKRVMENKDWTLFSPSDCPDLHEKYG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K+FE +Y YE +T G+IKLFKK+ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 KDFEHAYNKYETKTINGEIKLFKKLPAVSLWRKMLSMLFETGHPWITFKDTCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-----NGKLDPIKLKKTIRIAMR 415
+G+IHSSNLCTEITLNTS+ EI VCNLGSINL HMK + +LD KL+KT IAMR
Sbjct: 576 IGVIHSSNLCTEITLNTSETEIAVCNLGSINLNNHMKISDNNSFELDMEKLQKTTTIAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDN+IDINYYAV KAK SN +HRPVGLGIMGFQDCLH+M++ Y+SKEA+ FAD+SME I
Sbjct: 636 MLDNIIDINYYAVLKAKQSNKKHRPVGLGIMGFQDCLHMMRLSYASKEAVDFADKSMEAI 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYY+Y AS+ LA+E+G+YSS+ GSLW GILPQD+++LLEKER Y+K++ S L+WK
Sbjct: 696 CYYSYLASSNLAKERGKYSSFKGSLWSHGILPQDTIELLEKERCG-YVKMDKSSQLDWKY 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+ I + GMRNSNCVAIAPTATISNIIGVSASIEPT++NL++KSNLSGEFT IN YLV
Sbjct: 755 LRSHIVEHGMRNSNCVAIAPTATISNIIGVSASIEPTFQNLYVKSNLSGEFTIINEYLVN 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK +WDE M+A++KYFDG+LS+I RIP D+R +Y TAFEI P W++E S RQKWID
Sbjct: 815 DLKKLNIWDEVMVADIKYFDGSLSRIDRIPQDIRDLYKTAFEIQPEWLVECASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLNIY++ SGKKLDETYKLAW+ GLKTTYYLR++ A +KS + G L+ +
Sbjct: 875 QAQSLNIYMAGASGKKLDETYKLAWISGLKTTYYLRAMGATSTEKSTGQGG----ELNSV 930
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
SI N+ + I C IN+ N ECE CQ
Sbjct: 931 SI---NEEISRI-----CQINN--NSDEECEVCQ 954
>gi|347821494|ref|ZP_08874928.1| ribonucleotide-diphosphate reductase subunit alpha
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 933
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/756 (63%), Positives = 602/756 (79%), Gaps = 8/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YS TARLL++ I +EV G+E+ Q + Y YF + I KG+DN LL+ +L +
Sbjct: 179 IEKDPGYSYATARLLLHTIVREVLGREVAQDAMGQAYVGYFPECIKKGVDNGLLDERLLQ 238
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L AL RDL+F+YLGL+ LYDRYFLHIE RIE+PQ FFMR+AMGL+L+E++R
Sbjct: 239 YDLQRLGAALDAGRDLKFDYLGLQTLYDRYFLHIEKARIELPQTFFMRVAMGLALHETDR 298
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI FY +LSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GI+ESIKENALLSK
Sbjct: 299 EARAIAFYEVLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIYESIKENALLSK 358
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 359 FAGGLGNDWTRVRALGSHIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 418
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RVI+K WTLFSP VP LH FG
Sbjct: 419 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVIEKGPWTLFSPSSVPQLHELFG 478
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+FE++Y+ E + G+I+ K + A LWRK+LSMLFETGHPWITFKDACN+RSPQQH
Sbjct: 479 ADFEKAYVACEEKAARGEIRPAKTVQASDLWRKMLSMLFETGHPWITFKDACNLRSPQQH 538
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS +E VCNLGS+NL H+K+G +D KLKKTI +AMRMLDNV
Sbjct: 539 VGVVHSSNLCTEITLNTSDSETAVCNLGSVNLLRHLKDGGIDHEKLKKTITVAMRMLDNV 598
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV+KA+ SNLRHRPVGLG+MGFQD L+ ++IPY+S+EA++FADQSME ICY AY
Sbjct: 599 IDINYYAVRKARDSNLRHRPVGLGVMGFQDSLYELRIPYASQEAVEFADQSMEAICYQAY 658
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+ASTELA E+GRYSSY GSLW++GILP D+L +L RG +++V+ S +L+W LR +I
Sbjct: 659 WASTELARERGRYSSYKGSLWERGILPLDTLDMLANARGG-HVEVDRSATLDWDALRRKI 717
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRN+NCVAIAPTATISNI+GV ASIEP++ NL +KSNLSGEFT IN LV++L++
Sbjct: 718 AQDGMRNANCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINASLVRDLERL 777
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWDE MI +LK+F G+L I R+P D++ +Y+TAFE+ P W++EA + RQKWIDQ+QSL
Sbjct: 778 GLWDEVMIMDLKHFKGSLQPIDRVPQDIKALYSTAFEVDPQWLVEAAARRQKWIDQAQSL 837
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF---EMGIDSVNLDEISI 717
NIY++ SG+KLDETYKLAW+RGLKTTYYLR+ SA + + S ++ + D +
Sbjct: 838 NIYMAGASGRKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVNTRQLNAVASGDDSGAA 897
Query: 718 KGYNKNLQEIKNNKKCLINSEIN----DVNECESCQ 749
+++ + L ++I D CE+CQ
Sbjct: 898 AAQDRSGAPKTASAAALPATDIRFCVLDDPGCEACQ 933
>gi|372488574|ref|YP_005028139.1| ribonucleoside-diphosphate reductase subunit alpha [Dechlorosoma
suillum PS]
gi|359355127|gb|AEV26298.1| ribonucleoside-diphosphate reductase, alpha subunit [Dechlorosoma
suillum PS]
Length = 948
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/706 (67%), Positives = 587/706 (83%), Gaps = 5/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P YS+V ARLL+ ++ EV G+E Q + +Y E F I G+D +LL+ +L +
Sbjct: 216 IEREPGYSKVAARLLLSSVRVEVLGEEASQEAMAARYAEAFPGLIRTGVDAELLDARLKD 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL ERDLQF+YLGL+ LYDRYFLH++ RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 276 YDLERLAAALKAERDLQFDYLGLQTLYDRYFLHVDERRIELPQTFFMRVAMGLALNEIDR 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYNLLSSF+FM STPTLFNSGT SQLSSCYL+TV DDL GI++SIKENALL K
Sbjct: 336 EARAIEFYNLLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLEGIYQSIKENALLQK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNG+SQGVIPFLKVVND AVAVNQGGKRKGA+CAYLE+W
Sbjct: 396 YAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGAVCAYLESW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFM+RVI WTLFSP DVPDLH+KFG
Sbjct: 456 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMQRVINGGEWTLFSPSDVPDLHDKFG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE +Y YE + G+I+LFK+I A+ LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 516 KEFEVAYNAYEAKADRGEIRLFKRIPAVQLWRKMLTMLFETGHPWITFKDACNLRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH--MKNGK--LDPIKLKKTIRIAMRM 416
VG++HSSNLCTEITLNTS +E VCNLGS+NL H + +G+ LD KL++TIR AMR+
Sbjct: 576 VGVVHSSNLCTEITLNTSDSETAVCNLGSVNLPAHLILVDGQLVLDQAKLQRTIRTAMRL 635
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNV+DIN+YA KA+ +N+RHRPVGLGIMGF DCLH + +PY+S+ A++FAD+SME +C
Sbjct: 636 LDNVVDINFYATPKARNANVRHRPVGLGIMGFSDCLHRLGLPYASEAAVEFADRSMEAVC 695
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y+AY+AST+LAEE+GRYSS+ GSLWD+GILP DSL+LLE RG Y++V+ S +L+W L
Sbjct: 696 YHAYWASTDLAEERGRYSSFKGSLWDKGILPIDSLQLLEDARGG-YVEVDRSTTLDWDAL 754
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R RI + GMRNSNCVAIAPTATISNIIGVSA+IEP Y+NL++KSNLSGEFT +N LV++
Sbjct: 755 RERIAQVGMRNSNCVAIAPTATISNIIGVSAAIEPEYQNLYVKSNLSGEFTVVNESLVRD 814
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK LWDE MI++LKYFDG+L I RIPD+L+ YATAFEI P W+I A + RQKWIDQ
Sbjct: 815 LKALNLWDEVMISDLKYFDGSLGPIDRIPDELKARYATAFEIDPTWLIRAAARRQKWIDQ 874
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
+QSLN+Y++ SGKKLDE YKLAW +GLKTTYYLR++ A +K++
Sbjct: 875 AQSLNLYVAAPSGKKLDEIYKLAWTQGLKTTYYLRTLGATAMEKTS 920
>gi|437999564|ref|YP_007183297.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813185|ref|YP_007449638.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429338798|gb|AFZ83220.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779154|gb|AGF50034.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 953
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/755 (65%), Positives = 607/755 (80%), Gaps = 23/755 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ VTARLL++ I+KEV GK+I ++ Y +Y +FI G+ +L+ L +
Sbjct: 216 IEKEPSYNYVTARLLLHTIRKEVLGKDISHEEMHKNYADYLPEFIKIGVKGGILSSDLED 275
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+LL N + RDL F YLGL+ LYDRYFLH+ G RIE+PQ FFMR+AMG++ E ++
Sbjct: 276 YDLNLLGNVIDANRDLNFKYLGLQTLYDRYFLHLNGKRIELPQIFFMRVAMGIATKERDK 335
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
+ AI+FYN+LSSF+FM STPTLFNSGT +Q+SSCYL+TVPD+L GI+ESIKENALL+K
Sbjct: 336 NQKAIEFYNILSSFDFMSSTPTLFNSGTKHAQMSSCYLTTVPDNLDGIYESIKENALLAK 395
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 396 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 455
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRT DMN + W+PDLFMKRV+ WTLFSP D PDLH K+G
Sbjct: 456 HLDIEEFLELRKNTGDERRRTQDMNTSNWIPDLFMKRVMNNEDWTLFSPSDCPDLHEKYG 515
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE++Y YE +T G+I LFKKI A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 516 KEFEKAYSKYEAKTTNGEITLFKKIPAISLWRKMLSMLFETGHPWITFKDTCNIRSPQQH 575
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIAMR 415
+G++HSSNLCTEITLNT+++EI VCNLGSINL HMK +LD KL+ T ++AMR
Sbjct: 576 IGVVHSSNLCTEITLNTNESEIAVCNLGSINLNNHMKTTDNKSFELDLKKLQNTTKVAMR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDN+IDINYYAV KAK SN +HRPVGLGIMGFQDCLH+M+I Y+SKEAI FAD+SME I
Sbjct: 636 MLDNIIDINYYAVLKAKQSNEKHRPVGLGIMGFQDCLHMMRISYASKEAIDFADKSMEAI 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYYAY AS++LA+E+G+Y+S+ GSLW GILPQD++ +LEKER Y++++ S L+WK
Sbjct: 696 CYYAYLASSDLAKERGKYNSFKGSLWSHGILPQDTIDILEKERDG-YVEMDKSSQLDWKY 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LRN I + GMRNSNCVAIAPTATISNIIGVSASIEPT++NL++KSNLSGEFT IN YLV
Sbjct: 755 LRNHILENGMRNSNCVAIAPTATISNIIGVSASIEPTFQNLYVKSNLSGEFTIINEYLVD 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK+ +WDE M+A++KYFDG+LS+I RIP ++R +Y TAFEI P W++E S RQKWID
Sbjct: 815 DLKQLNIWDEVMVADIKYFDGSLSRIERIPQNIRDLYKTAFEIQPEWLVECASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
QSQSLNIY+S SGKKLDETYKLAW+RGLKTTYYLR++ A +KS + G ++SVN+ +
Sbjct: 875 QSQSLNIYMSGASGKKLDETYKLAWIRGLKTTYYLRAMGATSTEKSTGQGGELNSVNIKK 934
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ +K C IN IND ECE CQ
Sbjct: 935 -------------EQSKTCQIN--IND-QECEVCQ 953
>gi|451823321|ref|YP_007459595.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776121|gb|AGF47162.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 959
Score = 1035 bits (2677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/755 (65%), Positives = 614/755 (81%), Gaps = 15/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ +TARLL+ I KEV G++I D+ +YK+YF +FI KG+++ LL P+++
Sbjct: 214 IEKDPDYNYITARLLLNTIIKEVIGEDIVSSDLNTQYKKYFPEFIEKGLESGLLAPEMST 273
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L+ L + L ++DL+F YLGL+ LYDRYFLHI+G RIE+PQ FFMR+AMG+++NE +
Sbjct: 274 YDLNKLGSVLDYKKDLKFKYLGLQTLYDRYFLHIDGKRIELPQIFFMRVAMGIAINEPQK 333
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
+ AI+FY +LSSF+FM STPTLFNSGT SQ+SSCYL+TVPD+L GI+++IKENALL+K
Sbjct: 334 DDKAIEFYEILSSFDFMSSTPTLFNSGTKHSQMSSCYLTTVPDNLIGIYDAIKENALLAK 393
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+L S IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 394 YAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETW 453
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV + WTLFSP D PDLH K+G
Sbjct: 454 HLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVHENLDWTLFSPSDCPDLHEKYG 513
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
KEFE +YI YEN+T G+IKLFKK+ A+ LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 514 KEFEIAYIQYENKTTTGEIKLFKKLPAVTLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 573
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NG--KLDPIKLKKTIRIAMR 415
GIIHSSNLCTEITLNT+ NEI VCNLGSINL H+K NG LD K++KTI AMR
Sbjct: 574 DGIIHSSNLCTEITLNTNNNEIAVCNLGSINLVNHLKKSNNGYFYLDVEKIQKTITTAMR 633
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDN+IDINYYAV KA+ SN +HRPVGLG+MGFQDCLH+M+IPYSS+EA+ F+D+S E++
Sbjct: 634 MLDNIIDINYYAVSKAEISNRKHRPVGLGLMGFQDCLHLMRIPYSSQEAVDFSDKSTEIL 693
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
CYY+Y AS+ L++E+G Y+SY+GSLW +GI+P D+LK L ER YL V++S SL+W
Sbjct: 694 CYYSYLASSNLSKERGSYNSYNGSLWSKGIMPHDTLKTLLDER-EGYLDVDVSSSLDWDY 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LRN IKK+GMRNSNCVAIAPTATISNIIGVSASIEP ++NL++KSNLSGEFT IN YLV+
Sbjct: 753 LRNNIKKYGMRNSNCVAIAPTATISNIIGVSASIEPNFQNLYVKSNLSGEFTIINEYLVE 812
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK GLWD+ IA+LKYFDG+L++I RIP ++++Y TAFEI P W+I S RQKWID
Sbjct: 813 DLKKLGLWDQVTIADLKYFDGSLAKIDRIPASIKELYNTAFEIEPEWLIHCASRRQKWID 872
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLNIY+S SGKKLDE YKLAW++GLKTTYYLR+++A A+KS + G ++SV D
Sbjct: 873 QAQSLNIYMSGVSGKKLDEIYKLAWIKGLKTTYYLRTLAATSAEKSTGKGGELNSVRADI 932
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
I N N C IN +D +ECE CQ
Sbjct: 933 SHITSPN------NKNISCPINR--SDDSECEVCQ 959
>gi|297538243|ref|YP_003674012.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
versatilis 301]
gi|297257590|gb|ADI29435.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
versatilis 301]
Length = 938
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/756 (64%), Positives = 602/756 (79%), Gaps = 22/756 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P Y+ VTARL + ++ EV G+ + + Y EYF ++I GI+ +LL+ +LA+
Sbjct: 198 IETEPAYNYVTARLQLDLVRAEVLGERVSHAQMDEHYAEYFPRYIKMGINAELLDSRLAQ 257
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ AL +RD QF YLG++ LYDRYFLHIE RIE+PQ FFMR+AMGL++NE +R
Sbjct: 258 FDLTKLAAALNKDRDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMRVAMGLAINEIDR 317
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYN+LSSF+FM STPTLFN+GT+ SQLSSCYL+TV DDL GI++ IKENA+L K
Sbjct: 318 ESRAIEFYNVLSSFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGIYQGIKENAMLQK 377
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VRSLG+ IKGTNG+SQGVIPFLKVVND AVAVNQGGKRKGA+C YLETW
Sbjct: 378 YAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGAVCGYLETW 437
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLFSP DVPDLH+K+G
Sbjct: 438 HLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEAGDWTLFSPSDVPDLHDKYG 497
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FE +Y+ YE + + G+IKLFKKI AL +WRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 498 KAFETAYVEYERRAENGEIKLFKKIPALQMWRKMLSMLFETGHPWITFKDPCNIRSPQQH 557
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK--NGK--LDPIKLKKTIRIAMRM 416
VG++HSSNLCTEITLNTS+ EI VCNLGS+NL H+ NGK LD KL+ TI+I MRM
Sbjct: 558 VGVVHSSNLCTEITLNTSETEIAVCNLGSVNLLQHLAEVNGKLVLDNDKLQATIKIGMRM 617
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNV+DIN+Y V KA+ +N RHRPVG+GIMGFQ+CLH M+IPY+S EA++FAD++MEM+C
Sbjct: 618 LDNVVDINFYPVGKARNANTRHRPVGMGIMGFQNCLHAMRIPYASMEAVEFADRAMEMVC 677
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y AYYAST LAEE+ YSS+ GSLWDQGILP D+L LL ERG ++V+ S++L+W L
Sbjct: 678 YNAYYASTVLAEERAAYSSFKGSLWDQGILPLDTLDLLLNERGGN-VEVDRSKTLDWDAL 736
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
RNRI+K GMRNSNCVAIAPTATISNI+GVSASIEP Y+NL++KSNLSGEFT +N LV +
Sbjct: 737 RNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTIVNEQLVID 796
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK +GLWD M+++LKYFDG+L +I R+P DL+++YATAF++ P W+IEA + RQKWIDQ
Sbjct: 797 LKARGLWDAVMVSDLKYFDGSLQKIDRVPADLKQLYATAFDVDPTWLIEAAARRQKWIDQ 856
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEIS 716
+QSLN+Y + SGKKL++TY LAW RGLKTTYYLRS+ A A+KS G
Sbjct: 857 AQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSMGATAAEKSTGSGG---------E 907
Query: 717 IKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
+ + L+E K C I D ECESCQ
Sbjct: 908 LNAVSAGLEEAPKEYLPKVCSI-----DNPECESCQ 938
>gi|226940722|ref|YP_002795796.1| NrdA [Laribacter hongkongensis HLHK9]
gi|226715649|gb|ACO74787.1| NrdA [Laribacter hongkongensis HLHK9]
Length = 917
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/749 (62%), Positives = 593/749 (79%), Gaps = 21/749 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y +VTARLL+ I++EV G + Y E F + I +G+ LL+P+LA+
Sbjct: 190 IERDPAYDKVTARLLLDTIRREVAGG------VAATYAEVFQQGIQRGMQADLLDPRLAD 243
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL ERD QF YLGL+ LYDRYFLH++G RIEMPQ FFMR+AMGL+LNE++
Sbjct: 244 FDLPRLAAALDGERDRQFGYLGLQTLYDRYFLHVDGRRIEMPQTFFMRVAMGLALNEADP 303
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
A++FY+LLS F+FM STPTLFN+GT SQLSSCYL+T+ D L GIF++IKENA LSK
Sbjct: 304 TTQAMEFYDLLSRFDFMSSTPTLFNAGTRHSQLSSCYLTTIADSLDGIFDAIKENAQLSK 363
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 364 FAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 423
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV++ + WTLFSP DVPDLH+ G
Sbjct: 424 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMQRVMENAEWTLFSPADVPDLHDLTG 483
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ F Y YE + ++ K + A+ LWRK+L+MLFETGHPW+T+KDACN+RSPQQH
Sbjct: 484 RAFARRYAEYEAMARADTLRNAKTLRAVDLWRKMLTMLFETGHPWLTWKDACNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG +HSSNLCTEITLNTS +EI VCNLGS+NL H+K G LD KL +T+R+AMRMLDNV
Sbjct: 544 VGRVHSSNLCTEITLNTSDDEIAVCNLGSVNLANHLKEGALDQEKLARTVRVAMRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
ID+N+Y V+KA+ +NLRHRPVGLG+MGFQDCLH++++PY S+ A+ FAD+SME+I Y+AY
Sbjct: 604 IDLNFYPVEKARTANLRHRPVGLGVMGFQDCLHLLRLPYGSQAAVGFADESMELIAYHAY 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELAE +G Y S++GSLW QGILPQDS++LL ER YL+V+ S L+W +R RI
Sbjct: 664 LASTELAEMRGCYPSFEGSLWSQGILPQDSVELLAAER-QGYLEVDRSSRLDWTPVRERI 722
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+FGMRNSNC+AIAPTATI+NIIGVSASIEPTY+NL +KSNLSGEFT +N +LV++LK+
Sbjct: 723 ARFGMRNSNCLAIAPTATIANIIGVSASIEPTYKNLFVKSNLSGEFTVVNEFLVQDLKRL 782
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+A+LKYFDG+L+ I RIP D++ +YATAF++ P W++EA S RQKWIDQ+QSL
Sbjct: 783 GLWDAVMLADLKYFDGDLAPIERIPQDIKTLYATAFDVDPGWLVEAASRRQKWIDQAQSL 842
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y++ SGKKLD YKLAW+RGLKTTYYLR+++A A+KS G L+ + I+G
Sbjct: 843 NLYMAGASGKKLDTLYKLAWVRGLKTTYYLRTLAATSAEKSTGRGG----ELNAVPIEG- 897
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ K C I D +CE+CQ
Sbjct: 898 ----GMVAEPKFCSI-----DNPDCEACQ 917
>gi|94986919|ref|YP_594852.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia
intracellularis PHE/MN1-00]
gi|442555748|ref|YP_007365573.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia
intracellularis N343]
gi|94731168|emb|CAJ54530.1| Ribonucleotide reductase large subunit [Lawsonia intracellularis
PHE/MN1-00]
gi|441493195|gb|AGC49889.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia
intracellularis N343]
Length = 916
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/752 (64%), Positives = 598/752 (79%), Gaps = 24/752 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDI---PIKYKEYFSKFINKGIDNKLLNPK 57
+E +P Y++VTARLL + EV + + +D+ I YF KFI GI+ LL+P+
Sbjct: 186 IEYEPEYNKVTARLLRLSLAYEVLDQSTELMDLHQLKIATISYFPKFIELGINAGLLDPR 245
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
L+ FN S L+ AL+PERD F Y+G++ LYDRYFLHI+ RIE+PQ FFMR+AMGL+LNE
Sbjct: 246 LSTFNYSYLAQALVPERDELFGYIGIQTLYDRYFLHIKKRRIELPQLFFMRVAMGLALNE 305
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+E AI+FYNLLS+F+FM STPTLFNSGTIR QLSSC+L+T+ DDL IF+SIKENAL
Sbjct: 306 KKKEDKAIEFYNLLSNFDFMSSTPTLFNSGTIRPQLSSCFLTTINDDLENIFQSIKENAL 365
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
L KYAGG+GNDWT VR+LGSPIKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA+CAYL
Sbjct: 366 LQKYAGGIGNDWTPVRALGSPIKGTNGQSQGVIPFMKVANDTALAVNQGGKRKGAVCAYL 425
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
ETWH+DIE+F++LRKNTGDDRRRTHDMN A WVPDLFMKRV++ S WTLFSP DVP+LH
Sbjct: 426 ETWHLDIEDFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVLENSDWTLFSPNDVPELHE 485
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
KFG EFE+ Y YE +T G+I LFKK+SA+ LWRK+L+MLFETGHPWITFKDACN+RSP
Sbjct: 486 KFGLEFEKFYTHYEAKTLTGEITLFKKVSAVQLWRKMLTMLFETGHPWITFKDACNLRSP 545
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
QQH+G+IHSSNLCTEITLNTSK EI VCNLGSINL+ H+ NG++D KL +TI A+RML
Sbjct: 546 QQHIGVIHSSNLCTEITLNTSKEEIAVCNLGSINLSSHLINGEVDQNKLSQTIATALRML 605
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNVIDINYY KA Y+NL+HRP+G+GIMGF DCL+ + IPY+S +A++FAD+SME++CY
Sbjct: 606 DNVIDINYYNSPKASYANLQHRPIGIGIMGFADCLYKLGIPYASHQAVEFADRSMEIVCY 665
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
Y Y+ASTELA+E+G YS++ GSLWD+ ILP DSL LL KERG +L+V+ S L+W L+
Sbjct: 666 YTYWASTELAKERGAYSTFPGSLWDRKILPLDSLDLLLKERGG-FLEVDRSSRLDWDALK 724
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+RI K+GMRNSNCV++APTATISNIIGVS IEP Y+NL++KSN+SGEFT +N YLV +L
Sbjct: 725 DRIAKYGMRNSNCVSLAPTATISNIIGVSQGIEPAYQNLYVKSNMSGEFTIVNEYLVNDL 784
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
KK LWDE+M+A+LKYFDG+++ I R+PD L+K+YATAFEI P W+IEA S RQKWIDQ+
Sbjct: 785 KKLNLWDEAMVADLKYFDGSVAYIDRVPDSLKKLYATAFEIDPVWLIEAASRRQKWIDQA 844
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISI 717
QSLN+Y+ SGKK+DE YKLAWLRGLKTTYYLRS+ A+ +K
Sbjct: 845 QSLNLYLDTPSGKKMDEIYKLAWLRGLKTTYYLRSLGASQVEK----------------- 887
Query: 718 KGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N Q + L I+D ECE+CQ
Sbjct: 888 --VGTNSQSVLKKDTVLRACSIDD-PECEACQ 916
>gi|374620691|ref|ZP_09693225.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
proteobacterium HIMB55]
gi|374303918|gb|EHQ58102.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
proteobacterium HIMB55]
Length = 962
Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/755 (61%), Positives = 591/755 (78%), Gaps = 15/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS V ARLL+ ++ E + Q D+ Y + FI++GI+ +LL
Sbjct: 217 IEQEPNYSSVAARLLLDNLRAEGLSFLNVAESATQGDMATYYPQALKSFISRGIELELLA 276
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAE++L +L +ALLPERDLQF+YLGL+ LYDRYF+H + R E+PQ FFMR+AMGL+
Sbjct: 277 PNLAEYDLDMLGDALLPERDLQFSYLGLQTLYDRYFIHSDETRFELPQLFFMRVAMGLAT 336
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 337 REDDKNARAIEFYQLLSSFDYMSSTPTLFNSGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 396
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 397 AMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 456
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLFSP DVPDL
Sbjct: 457 YLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEDGDWTLFSPNDVPDL 516
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G FEE Y YE Q + G++KL K + A LWRK+L M+FETGHPWITFKD CNIR
Sbjct: 517 HDLYGTAFEERYTQYEEQARTGELKLHKTLKAQALWRKMLGMIFETGHPWITFKDPCNIR 576
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTSK+EI VCNLGS+NL H++NG+L+ KL+KT+ A+R
Sbjct: 577 SPQQHCGVVHSSNLCTEITLNTSKDEIAVCNLGSVNLPQHIENGELNIDKLRKTVTTAIR 636
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V+ ++ SN++HRP+GLG+MGFQD L+ I Y+S++A++FAD+SME I
Sbjct: 637 MLDNVIDINYYSVETSENSNMKHRPIGLGLMGFQDALYKTDISYASEQAVEFADKSMEAI 696
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AST+LA E+G YSSY+GSLW QGI P DSL +L ++RG+ Y+ VN S++W
Sbjct: 697 SYFAISASTDLAAERGAYSSYEGSLWSQGIFPIDSLNMLVEQRGADYISVNQDSSMDWDA 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR ++ + GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 757 LRGKVAQQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVR 816
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWD+ M+ +LKYFDG++ + RIP DL+ YATAFE+ P W+++A S RQKWID
Sbjct: 817 DLKERGLWDKVMVNDLKYFDGSVQAVDRIPADLKAKYATAFEVEPRWLVDAASRRQKWID 876
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+N SGKKLD TY++AW GLKTTYYLRS++A +KS G L+ +
Sbjct: 877 QAQSLNLYINNASGKKLDVTYRMAWYSGLKTTYYLRSLAATGTEKSTVNTG----QLNAV 932
Query: 716 SIKGYNKN-LQEIKNNKKCLINSEINDVNECESCQ 749
S + +Q K C + D +CE+CQ
Sbjct: 933 SQQAAEAAPVQPAPVPKACSL-----DDPDCEACQ 962
>gi|220935778|ref|YP_002514677.1| ribonucleotide-diphosphate reductase subunit alpha
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219997088|gb|ACL73690.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 971
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/755 (61%), Positives = 591/755 (78%), Gaps = 14/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EK+P YSQVTARLLM +++E + Q ++ +Y EYF ++ + + +LL
Sbjct: 225 IEKEPNYSQVTARLLMDTLRREALSFIAGLPQAATQAEMTQRYPEYFKAYVKRAAELELL 284
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L ++L L AL PERDLQF YLGL+ LYDRYF+H G+R E+PQ FFMR+AMGL+
Sbjct: 285 DSELTRYDLDRLGAALKPERDLQFTYLGLQTLYDRYFIHSGGVRFELPQAFFMRVAMGLA 344
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
++E +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GIF +IK+
Sbjct: 345 IHEIDREGRAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFGAIKD 404
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 405 NALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 464
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV ++ WTLFSP + PD
Sbjct: 465 AYLETWHVDVEEFIELRKNTGDDRRRTHDMNSANWIPDLFMKRVAEEGEWTLFSPNETPD 524
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G+ FE+ Y YE + G+IK+FKK+ A+ LWRK+L+MLFETGHPW+TFKD CN+
Sbjct: 525 LHDLVGEAFEQRYAEYEAKAARGEIKVFKKLKAVDLWRKMLAMLFETGHPWMTFKDPCNL 584
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNTS +EI VCNLGS+NL H+ L+ KL++T+ AM
Sbjct: 585 RSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVDENGLNLEKLERTVSTAM 644
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID NYY+V +A+ SNLRHRPVGLGIMGFQD L+ +IPY+S++A++FAD+SME
Sbjct: 645 RMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDALYQQRIPYASEDAVEFADRSMEA 704
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AST+LAEE+GRY S+DGSLW QG+LP DS++LL K RG +YL+ + S + +W
Sbjct: 705 VSYYAIKASTDLAEERGRYQSFDGSLWSQGVLPIDSIELLAKSRG-QYLQQDTSMTFDWD 763
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR+R+K GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN LV
Sbjct: 764 SLRDRVKTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPNLV 823
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK + LWDE M+ +LKY+DG++ I R+P DL+++YATAFE+ W++EA S RQKW+
Sbjct: 824 NDLKARKLWDEVMVNDLKYYDGSVQPIDRVPADLKQLYATAFELDARWLVEAASRRQKWL 883
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SGKKLD YKLAW+RGLKTTYYLRS+ A + +KS + L+
Sbjct: 884 DQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTVADASRANKLN- 942
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++KG + + K C I ECE+CQ
Sbjct: 943 -AVKGADAAAPATEAPKMCSILDP-----ECEACQ 971
>gi|424940364|ref|ZP_18356127.1| catalytic component of class Ia ribonucleotide reductase
[Pseudomonas aeruginosa NCMG1179]
gi|346056810|dbj|GAA16693.1| catalytic component of class Ia ribonucleotide reductase
[Pseudomonas aeruginosa NCMG1179]
Length = 963
Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/762 (62%), Positives = 589/762 (77%), Gaps = 24/762 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KG + +L++
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVAESATHHEMAELYAKALPAYIEKGAEFELVD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL EF+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 AKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV +WTLFSP DVPDL
Sbjct: 453 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFSPSDVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE GK+KL K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL+KT++ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVNGKLDTAKLEKTVKTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S AI FADQSME I
Sbjct: 633 MLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIAFADQSMEAI 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS K L +ERG+KY++V++SE+L+W
Sbjct: 693 SYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVDLSETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 LRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI+EA S RQKWID
Sbjct: 812 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQ--------EIKNNKKCLINSEINDVNECESCQ 749
S G N LQ + C I D +CE+CQ
Sbjct: 928 SAGG-NDGLQAAPAAEPKPAPVPQACSI-----DNPDCEACQ 963
>gi|350562595|ref|ZP_08931428.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349778934|gb|EGZ33283.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 970
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/758 (60%), Positives = 592/758 (78%), Gaps = 15/758 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YSQVTARLLM +++E +E Q ++ +Y EYF ++ + + +LL
Sbjct: 219 IEQEPNYSQVTARLLMDNLRREALSFLAGMPQEATQAEMAGRYPEYFRAYVKRAAELELL 278
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L ++L L AL PERDLQF YLGL+ L DRYF+H G R E+PQ FFMR+AMGL+
Sbjct: 279 DSQLTRYDLDALGKALKPERDLQFTYLGLQTLCDRYFIHSGGTRFELPQAFFMRVAMGLA 338
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +RE AI+FY LLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GIFE+IK+
Sbjct: 339 INEIDREARAIEFYELLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFEAIKD 398
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT+VR +GS IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 399 NALLSKFAGGLGNDWTRVRGMGSHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 458
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEFIELRKNTGDDRRRTHDMN A W+PDLFM+RV+++ WTLFSP + PD
Sbjct: 459 AYLETWHIDVEEFIELRKNTGDDRRRTHDMNTANWIPDLFMQRVVEEGDWTLFSPSETPD 518
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G F + Y YE + G+IK+FKK+ A+ LWRK+L+MLFETGHPW+TFKD CN+
Sbjct: 519 LHDLVGPAFAKRYAEYEEKAARGEIKVFKKLKAVDLWRKMLAMLFETGHPWMTFKDPCNL 578
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQ HVG++HSSNLCTEITLNTS +EI VCNLGS+NL H+ +G LD KL++T+ AM
Sbjct: 579 RSPQGHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVTDGALDLAKLERTVNTAM 638
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVI+ NYY+V +A+ +NLRHRPVGLGIMGFQD L+ M++PY+S++A+ FAD SME
Sbjct: 639 RMLDNVIEYNYYSVPQARRANLRHRPVGLGIMGFQDALYAMRLPYASEDAVAFADTSMEA 698
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y++ AST LAEE+GRY+S++GSLW QG+LP DS+ L + RG +YL+ + S +L+W
Sbjct: 699 VSYFSIQASTRLAEERGRYTSFEGSLWSQGVLPIDSIARLAEARG-QYLQQDTSATLDWD 757
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN YLV
Sbjct: 758 ALRERVQTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLV 817
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK++GLWDE M+ +LKY+DG++ + R+P+DL+ +YATAFE+ W++EA S RQKWI
Sbjct: 818 RDLKERGLWDEVMVNDLKYYDGSVQPLDRVPEDLKALYATAFELDTRWLVEAASRRQKWI 877
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SGKKLD YKLAW+RGLKTTYYLRS+ A + +KS + L+
Sbjct: 878 DQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTVADASRANKLNA 937
Query: 715 ISIKG-YNKNLQ--EIKNNKKCLINSEINDVNECESCQ 749
++ G N + Q E K C I +CE+CQ
Sbjct: 938 VNGNGKANGSAQPAEPSAPKACSILDP-----DCEACQ 970
>gi|15596353|ref|NP_249847.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PAO1]
gi|107100606|ref|ZP_01364524.1| hypothetical protein PaerPA_01001631 [Pseudomonas aeruginosa PACS2]
gi|116049088|ref|YP_792110.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218892880|ref|YP_002441749.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa LESB58]
gi|254234290|ref|ZP_04927613.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
C3719]
gi|296390474|ref|ZP_06879949.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PAb1]
gi|313106127|ref|ZP_07792382.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
39016]
gi|386059938|ref|YP_005976460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa M18]
gi|386064969|ref|YP_005980273.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa NCGM2.S1]
gi|392985359|ref|YP_006483946.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa DK2]
gi|416858081|ref|ZP_11913139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa 138244]
gi|416873134|ref|ZP_11917258.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa 152504]
gi|418583375|ref|ZP_13147444.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa MPAO1/P1]
gi|418594614|ref|ZP_13158397.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa MPAO1/P2]
gi|419752309|ref|ZP_14278717.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PADK2_CF510]
gi|420140843|ref|ZP_14648572.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa CIG1]
gi|421155346|ref|ZP_15614824.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa ATCC 14886]
gi|421162135|ref|ZP_15621022.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa ATCC 25324]
gi|421169360|ref|ZP_15627380.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa ATCC 700888]
gi|421175790|ref|ZP_15633462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa CI27]
gi|421181857|ref|ZP_15639344.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa E2]
gi|421515784|ref|ZP_15962470.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PAO579]
gi|451987190|ref|ZP_21935348.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Pseudomonas aeruginosa 18A]
gi|9947078|gb|AAG04545.1|AE004545_8 NrdA, catalytic component of class Ia ribonucleotide reductase
[Pseudomonas aeruginosa PAO1]
gi|115584309|gb|ABJ10324.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166221|gb|EAZ51732.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
C3719]
gi|218773108|emb|CAW28920.1| NrdA, catalytic component of class Ia ribonucleotide reductase
[Pseudomonas aeruginosa LESB58]
gi|310878884|gb|EFQ37478.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
39016]
gi|334839848|gb|EGM18519.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa 138244]
gi|334845270|gb|EGM23834.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa 152504]
gi|347306244|gb|AEO76358.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa M18]
gi|348033528|dbj|BAK88888.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa NCGM2.S1]
gi|375043007|gb|EHS35642.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa MPAO1/P2]
gi|375046983|gb|EHS39532.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa MPAO1/P1]
gi|384401319|gb|EIE47674.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PADK2_CF510]
gi|392320864|gb|AFM66244.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa DK2]
gi|403246408|gb|EJY60135.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa CIG1]
gi|404349512|gb|EJZ75849.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PAO579]
gi|404520730|gb|EKA31391.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa ATCC 14886]
gi|404526566|gb|EKA36772.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa ATCC 700888]
gi|404531568|gb|EKA41508.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa CI27]
gi|404536973|gb|EKA46595.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa ATCC 25324]
gi|404543121|gb|EKA52422.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa E2]
gi|451754808|emb|CCQ87871.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Pseudomonas aeruginosa 18A]
gi|453048305|gb|EME96018.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PA21_ST175]
Length = 963
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/762 (62%), Positives = 589/762 (77%), Gaps = 24/762 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KG + +L++
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVAESATHHEMAELYAKALPAYIEKGAEFELVD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL EF+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 AKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV +WTLFSP DVPDL
Sbjct: 453 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFSPSDVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE GK+KL K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL+KT++ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDTAKLEKTVKTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S AI FADQSME I
Sbjct: 633 MLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIAFADQSMEAI 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS K L +ERG+KY++V++SE+L+W
Sbjct: 693 SYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVDLSETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 LRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI+EA S RQKWID
Sbjct: 812 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQ--------EIKNNKKCLINSEINDVNECESCQ 749
S G N LQ + C I D +CE+CQ
Sbjct: 928 SAGG-NDGLQAAPAAEPKPAPVPQACSI-----DNPDCEACQ 963
>gi|355647946|ref|ZP_09055339.1| hypothetical protein HMPREF1030_04425 [Pseudomonas sp. 2_1_26]
gi|354827617|gb|EHF11762.1| hypothetical protein HMPREF1030_04425 [Pseudomonas sp. 2_1_26]
Length = 963
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/762 (62%), Positives = 589/762 (77%), Gaps = 24/762 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KG + +L++
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVAESATHHEMAELYAKALPAYIEKGAEFELVD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL EF+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 AKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV +WTLFSP DVPDL
Sbjct: 453 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFSPSDVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE GK+KL K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL+KT++ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDTAKLEKTVKTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S AI FADQSME I
Sbjct: 633 MLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIAFADQSMEAI 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS K L +ERG+KY++V++SE+L+W
Sbjct: 693 SYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVDLSETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 LRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI+EA S RQKWID
Sbjct: 812 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQ--------EIKNNKKCLINSEINDVNECESCQ 749
S G N LQ + C I D +CE+CQ
Sbjct: 928 SAGG-NDGLQAAPAAEPKPAPVPQACSI-----DNPDCEACQ 963
>gi|152988045|ref|YP_001349578.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
aeruginosa PA7]
gi|150963203|gb|ABR85228.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Pseudomonas aeruginosa PA7]
Length = 963
Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/762 (62%), Positives = 589/762 (77%), Gaps = 24/762 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KG + +L++
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVAESATHHEMAELYAKALPAYIEKGAEFELVD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL EF+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 AKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV +WTLFSP DVPDL
Sbjct: 453 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFSPSDVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE GK+KL K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL+KT++ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDTAKLEKTVKTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S AI FADQSME I
Sbjct: 633 MLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIAFADQSMEAI 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS K L +ERG+KY++V++SE+L+W
Sbjct: 693 SYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVDLSETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 LRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI+EA S RQKWID
Sbjct: 812 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQ--------EIKNNKKCLINSEINDVNECESCQ 749
S G N LQ + C I D +CE+CQ
Sbjct: 928 SAGG-NDGLQAAPAAEPKPAPVPQACSI-----DNPDCEACQ 963
>gi|407803490|ref|ZP_11150325.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax sp.
W11-5]
gi|407022582|gb|EKE34334.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax sp.
W11-5]
Length = 965
Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/757 (61%), Positives = 603/757 (79%), Gaps = 15/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + Q ++ YK+ ++ +GI+ +LL+
Sbjct: 216 IEQEPNYSLVTARLLMDNLRAEALQFLGVAERADQAEMEALYKDALKAYVFRGIELELLD 275
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L F+L L A+ ERD+QF YLGL+ LYDRYFLH +R E+PQ FFMR+AMGL++
Sbjct: 276 PELGRFDLDKLGAAMKGERDMQFTYLGLQTLYDRYFLHSNDVRFELPQCFFMRVAMGLAV 335
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FY+LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 336 REDDREARAIEFYDLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLFGIYGAIQDN 395
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 396 AMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 455
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRVI++ WTLFSP +VPDL
Sbjct: 456 YLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEEQEWTLFSPNNVPDL 515
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE+ Y+ YE T+ G++KLFK+I A+ LWRK+LSMLFETGHPW TFKD CN+R
Sbjct: 516 HDLYGEAFEKKYLEYEAMTRDGRLKLFKRIPAVNLWRKMLSMLFETGHPWFTFKDPCNLR 575
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH-MKNGKLDPIKLKKTIRIAM 414
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSIN+ H + G LD +KL+K +R A+
Sbjct: 576 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINMPRHILPEGGLDLVKLEKNVRTAV 635
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNL+HRPVGLGIMGFQD L++ KI Y+S EA++FAD+SME
Sbjct: 636 RMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYMQKIAYTSPEAVEFADRSMEA 695
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGS-KYLKVNMSESLNW 533
+ Y+A AS+ELA E+G Y++++GSLW QGILP DSL++L +ERG KYL V+ S++L+W
Sbjct: 696 VSYFAINASSELAAERGSYATFEGSLWSQGILPIDSLEILARERGDEKYLNVDRSQTLDW 755
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
KLR+ ++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N +L
Sbjct: 756 NKLRDVVRTQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPFL 815
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK +GLWD M+ +LKY+DG++ I RIP DL++IY TAFE+ P W++EA S RQKW
Sbjct: 816 VNDLKARGLWDNVMVNDLKYYDGSVQPIDRIPQDLKEIYRTAFEVEPRWLVEAASRRQKW 875
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNL 712
IDQ+QSLN+YI+ +GKKLD TYK+AWL GLKTTYYLR+I A ++KS G ++SV+
Sbjct: 876 IDQAQSLNLYIAQANGKKLDITYKMAWLLGLKTTYYLRAIGATTSEKSTINDGRLNSVSA 935
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ + ++ + C I D +CE+CQ
Sbjct: 936 APVAETASFEQAADVP--QACSI-----DDPDCEACQ 965
>gi|254239526|ref|ZP_04932848.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
gi|126192904|gb|EAZ56967.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
Length = 963
Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/757 (62%), Positives = 588/757 (77%), Gaps = 14/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KG + +L++
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVAESATHHEMAELYAKALPAYIEKGAEFELVD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL EF+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 AKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE I+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDREARTIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV +WTLFSP DVPDL
Sbjct: 453 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFSPSDVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE GK+KL K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL+KT++ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDTAKLEKTVKTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S AI FADQSME I
Sbjct: 633 MLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIAFADQSMEAI 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS K L +ERG+KY++V++SE+L+W
Sbjct: 693 SYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVDLSETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 LRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI+EA S RQKWID
Sbjct: 812 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEI--KNNKKCLINSEIN-DVNECESCQ 749
S G N LQ K + + D +CE+CQ
Sbjct: 928 SAGG-NDGLQATPAAEPKPAPVPQACSIDNPDCEACQ 963
>gi|429215136|ref|ZP_19206298.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas sp.
M1]
gi|428154363|gb|EKX00914.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas sp.
M1]
Length = 959
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/758 (62%), Positives = 591/758 (77%), Gaps = 20/758 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y +I KG++ +L++
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVVESATHHEMAELYARALPAYIEKGVEFELVD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKL F+L+ L AL ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PKLKTFDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E+ AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEPQKEERAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYSAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + TWTLFSP DVPDL
Sbjct: 453 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGTWTLFSPSDVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE T+ GK+KL K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLYGKAFEERYEYYEALTQYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD KL +T++ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIVDGKLDVEKLGRTVKTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 633 MLDNVIDINYYSVPQAENSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LAEE+G Y ++DGSLW QGILP DS KLL + RG+KY++V+ SESL+W
Sbjct: 693 SYFAIQASCDLAEERGAYETFDGSLWSQGILPIDSQKLLIEARGAKYIEVDQSESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRERVRK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + SV
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSV- 930
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+DE G K C I D +CE+CQ
Sbjct: 931 IDE----GLQAAPAPAPVPKACSI-----DNPDCEACQ 959
>gi|430761601|ref|YP_007217458.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430011225|gb|AGA33977.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 970
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/758 (60%), Positives = 590/758 (77%), Gaps = 15/758 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YSQVTARLLM +++E +E Q ++ +Y EYF ++ + + +LL
Sbjct: 219 IEQEPNYSQVTARLLMDSLRREALSFLAGMPQEATQAEMAGRYPEYFRAYVKRAAELELL 278
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L ++L L AL PERDLQF YLGL+ L DRYF+H G R E+PQ FFMR+AMGL+
Sbjct: 279 DSQLTRYDLDALGKALKPERDLQFTYLGLQTLCDRYFIHSGGTRFELPQAFFMRVAMGLA 338
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +RE AI+FY LLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GIFE+IK+
Sbjct: 339 INEIDREARAIEFYELLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFEAIKD 398
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT+VR +GS IKGTNG+SQGVIPF+KV ND AVAVNQGG+R+GA+C
Sbjct: 399 NALLSKFAGGLGNDWTRVRGMGSHIKGTNGKSQGVIPFMKVANDTAVAVNQGGRRRGAVC 458
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFM+RV+++ WTLFSP + PD
Sbjct: 459 GYLETWHIDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMQRVVEEGDWTLFSPSETPD 518
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G F + Y YE + G+IK+FKK+ A+ LWRK+L+MLFETGHPW+TFKD CN+
Sbjct: 519 LHDLVGPAFAKRYAEYEEKAARGEIKVFKKLKAVDLWRKMLAMLFETGHPWMTFKDPCNL 578
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQ HVG++HSSNLCTEI LNTS +EI VCNLGS+NL H+ +G LD KL++T+ AM
Sbjct: 579 RSPQSHVGVVHSSNLCTEICLNTSDDEIAVCNLGSVNLAAHVTDGALDLPKLERTVTTAM 638
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID NYY+V +A+ +NLRHRPVGLGIMGFQD L+ M++PY+S++A+ FAD SME
Sbjct: 639 RMLDNVIDYNYYSVPQARRANLRHRPVGLGIMGFQDALYAMRLPYASEDAVAFADTSMEA 698
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y++ AST LAEE+GRY+S++GSLW QG+LP DS+ L + RG +YL+ + S +L+W
Sbjct: 699 VSYFSIQASTRLAEERGRYTSFEGSLWSQGVLPIDSIARLAEARG-QYLQQDTSATLDWD 757
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN YLV
Sbjct: 758 ALRERVQTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLV 817
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK++GLWDE M+ +LKY+DG++ + R+P+DL+ +YATAFE+ W++EA S RQKWI
Sbjct: 818 RDLKERGLWDEVMVNDLKYYDGSVQPLDRVPEDLKALYATAFELDTRWLVEAASRRQKWI 877
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SGKKLD YKLAW+RGLKTTYYLRS+ A + +KS + L+
Sbjct: 878 DQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTVADASRANKLNA 937
Query: 715 ISIKG-YNKNLQ--EIKNNKKCLINSEINDVNECESCQ 749
++ G N + Q E K C I +CE+CQ
Sbjct: 938 VNGNGKANGSAQPAEPSAPKACSILDP-----DCEACQ 970
>gi|119504229|ref|ZP_01626309.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
proteobacterium HTCC2080]
gi|119459737|gb|EAW40832.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
proteobacterium HTCC2080]
Length = 964
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/754 (61%), Positives = 592/754 (78%), Gaps = 14/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E+DP YS V ARLL+ ++ E K Q D+ Y E S FI++G+ +LL+
Sbjct: 220 IEQDPNYSYVAARLLLDNLRAESLNYLGVAKSATQSDMAQLYSEALSAFIHQGVTLELLS 279
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L EF+++ L ALLPERDLQF+YLGL+ LYDRYF+H + +RIE+PQ FFMR+AMGLS+
Sbjct: 280 PELLEFDIAALGQALLPERDLQFSYLGLQTLYDRYFIHADEVRIELPQVFFMRVAMGLSI 339
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + AI+FY LLSSF++M STPTLFNSGT+RSQLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 340 REDDPNTRAIEFYQLLSSFDYMSSTPTLFNSGTLRSQLSSCYLTTVPDDLFGIYGAIQDN 399
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQG++PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 400 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGAVCA 459
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP DVPDL
Sbjct: 460 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGDWTLFSPNDVPDL 519
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE+ Y YE G+I++ K + A +WRK+L M+FETGHPW+TFKD CN+R
Sbjct: 520 HDLYGRAFEDRYAQYEAMAASGEIRVHKTLKAQAVWRKMLGMIFETGHPWVTFKDPCNLR 579
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNTS +EI VCNLGS+NL H+++GKL+ KL+ T+R A+R
Sbjct: 580 SPQQHVGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIEDGKLNLKKLRATVRTAIR 639
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN+RHRP+GLGIMGFQD L+ + + Y+SK A+ FADQSME +
Sbjct: 640 MLDNVIDINYYSVPQAEQSNMRHRPIGLGIMGFQDALYKIDVSYASKGAVSFADQSMEAV 699
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS+ELA E+G YSSY+GSLW QG+ P DSL +L ++RG+ Y++VN + +W +
Sbjct: 700 SYFAIEASSELAAERGAYSSYEGSLWSQGVFPLDSLDILVEQRGANYIEVNRDMTFDWPE 759
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
L+ R+ K GMRNSNC+AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 760 LKGRVAKHGMRNSNCMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVR 819
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK + LWD+ M+ +LKYFDG++ I RIPDDL+ Y+TAFEI P W++++ S RQKWID
Sbjct: 820 DLKARDLWDKVMVNDLKYFDGSVQSIDRIPDDLKAKYSTAFEIEPRWLVDSASRRQKWID 879
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+N SGKKLD TY++AW GLKTTYYLRS++A +KS E G L+ +
Sbjct: 880 QAQSLNLYINNASGKKLDVTYRMAWYSGLKTTYYLRSLAATGTEKSTVESG----KLNAV 935
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ Q + C + D +CE+CQ
Sbjct: 936 ASGAAESTPQPAPVPQACSL-----DDPDCEACQ 964
>gi|90022103|ref|YP_527930.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharophagus
degradans 2-40]
gi|89951703|gb|ABD81718.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
[Saccharophagus degradans 2-40]
Length = 969
Score = 1003 bits (2593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/712 (64%), Positives = 574/712 (80%), Gaps = 6/712 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P Y+ T+RLLM ++ E +E Q ++ Y + +I KGI+ L++
Sbjct: 217 VEKEPNYTYATSRLLMDKLRAEALSFLGIAEEATQAEMETLYAKTLPAYIEKGIELDLIS 276
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA ++L++L NAL+ ERDLQF YLGL+ LYDRYFLH +RIE+PQ FFMR+AMGL+
Sbjct: 277 PDLASYDLNMLGNALIAERDLQFTYLGLQTLYDRYFLHSNDVRIELPQIFFMRVAMGLAA 336
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE N+ + A++FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ ++++N
Sbjct: 337 NEENKNERAVEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAMQDN 396
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 397 AMLSKWAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 456
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV ++ WTLFSP DVPDL
Sbjct: 457 YLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEEKEWTLFSPNDVPDL 516
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ FG+ FE+ Y YE Q GKI++ KK+ AL LWRK+L MLFETGHPWITFKDACN+R
Sbjct: 517 HDLFGRAFEDRYEEYERQAAAGKIRVHKKVRALDLWRKMLGMLFETGHPWITFKDACNLR 576
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQH G++HSSNLCTEITLNT N EI VCNLGSINL H+ +GKLD KL +T++ A+
Sbjct: 577 SPQQHAGVVHSSNLCTEITLNTKANEEIAVCNLGSINLAQHIVDGKLDEEKLAQTVKTAV 636
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYYAV+ A+ SN+RHRPVGLG+MGFQD L+ M I YSS +A+ FAD+SME
Sbjct: 637 RMLDNVIDINYYAVESARTSNMRHRPVGLGLMGFQDALYKMNISYSSDDAVTFADRSMEA 696
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS+ELA+E+G YS++DGSLW +GILP DSL LL + RG K++KV+ S + +W
Sbjct: 697 ISYHAIKASSELAKERGSYSTFDGSLWSKGILPLDSLDLLIENRGEKFIKVDKSSTHDWD 756
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 757 TLRETVKTQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 816
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK++GLWD M+ +LKY++G+L +I RIP+DL+ +Y+TAFE+ P WI+EA S RQKWI
Sbjct: 817 HDLKERGLWDSVMVNDLKYYEGSLQKIDRIPEDLKALYSTAFEVEPRWIVEAASRRQKWI 876
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQ+QSLN+YI+ +GKKLD TY++AW GLKTTYYLR++SA +KS G
Sbjct: 877 DQAQSLNLYIAGANGKKLDITYRMAWYSGLKTTYYLRALSATTTEKSTVTSG 928
>gi|443471933|ref|ZP_21061970.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Pseudomonas pseudoalcaligenes KF707]
gi|442902158|gb|ELS27799.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Pseudomonas pseudoalcaligenes KF707]
Length = 959
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/758 (62%), Positives = 588/758 (77%), Gaps = 20/758 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KGI+ +LL+
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYVEKGIEFELLD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKL F+L L AL ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PKLKSFDLEKLGRALNHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E+ AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEPQKEERAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYNAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + TWTLFSP DVPDL
Sbjct: 453 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGTWTLFSPADVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE GK+KL K I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLYGKAFEERYEYYEALATYGKLKLHKVIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD KL +T++ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIIDGKLDVEKLGRTVKTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 633 MLDNVIDINYYSVDQARNSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G Y ++ GSLW QGILP DS KLL + RG+KY++V+ SESL+W
Sbjct: 693 SYFAIQASCDLADERGAYETFQGSLWSQGILPIDSQKLLIEARGAKYIEVDQSESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 VRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + SV
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSV- 930
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+DE G Q + C I D +CE+CQ
Sbjct: 931 IDE----GLQAAPQPAPVPQACSI-----DNPDCEACQ 959
>gi|289208616|ref|YP_003460682.1| ribonucleoside-diphosphate reductase subunit alpha
[Thioalkalivibrio sp. K90mix]
gi|288944247|gb|ADC71946.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thioalkalivibrio sp. K90mix]
Length = 964
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/756 (61%), Positives = 590/756 (78%), Gaps = 16/756 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKE----VFGK--EIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EK+P YS+VTARLLM +++E V G+ E Q + +Y EYF +I + D +L+
Sbjct: 218 IEKEPNYSEVTARLLMDALRREALSFVHGRPEEATQAQLAERYAEYFGAYIRRAADLELV 277
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L ++L L A+ PERDLQF YLGL+ LYDRYF+H +G R E+PQ FFMR+AMGL+
Sbjct: 278 DSELTRYDLDKLGAAIKPERDLQFTYLGLQTLYDRYFIHSDGTRFELPQAFFMRVAMGLA 337
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSCYL++VPDDL GI+ +I++
Sbjct: 338 INEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTSVPDDLDGIYSAIRD 397
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 398 NALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 457
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP + PD
Sbjct: 458 AYLETWHIDVEEFIELRKNTGDDRRRTHDMNSANWIPDLFMKRVAEDGDWTLFSPNETPD 517
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G +FE+ Y YE + G++++ K + A+ LWRK+L MLFETGHPW+TFKD CN+
Sbjct: 518 LHDLVGTDFEKRYCEYEEKAARGELRVHKTMKAVDLWRKMLGMLFETGHPWMTFKDPCNL 577
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
RSPQQH G++HSSNLCTEITLNTS +EI VCNLGSINL H+ + G+LD KL++T+ A
Sbjct: 578 RSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSINLAAHINEAGELDQDKLEQTVNTA 637
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVID NYY+V +A+ SNLRHRPVGLGIMGFQD L+ +++PY+S+ A++FAD SME
Sbjct: 638 MRMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDALYKLRMPYASEAAVEFADTSME 697
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AST+LAEE+GRY S+ GSLW QGILP DS++ L + RG YL+++ ++ L W
Sbjct: 698 AVSYYAIKASTDLAEERGRYESFPGSLWSQGILPIDSVEKLAETRGD-YLQMDTTQRLEW 756
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
KLR R+KK GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN YL
Sbjct: 757 DKLRKRVKKVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYL 816
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK + LWDE M+ +LKY+DG++ + R+PDDL+ +YATAFE+ W++EA S RQKW
Sbjct: 817 VRDLKDRELWDEVMVNDLKYYDGSVQPLDRVPDDLKALYATAFELDTRWLVEAASRRQKW 876
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
IDQ+QSLN+Y++ SG KLD YKLAW+RGLKTTYYLRS+ A + +KS DS +
Sbjct: 877 IDQAQSLNLYMAEPSGPKLDALYKLAWVRGLKTTYYLRSMGATHVEKSTV---ADSSRAN 933
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+++ + E + K C I +CE+CQ
Sbjct: 934 KLNAVSGGQQASEPEAPKACSILDP-----DCEACQ 964
>gi|75677069|ref|YP_319490.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
winogradskyi Nb-255]
gi|74421939|gb|ABA06138.1| ribonucleotide reductase large subunit [Nitrobacter winogradskyi
Nb-255]
Length = 969
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/761 (59%), Positives = 592/761 (77%), Gaps = 19/761 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E DP Y++V+ARLL+ +++E ++ Q ++ +Y +YF ++ GID++LL
Sbjct: 216 VETDPDYAKVSARLLLDKMRREALSFVAGRLEQATQAEMAERYADYFLSYVRAGIDHELL 275
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P++ F+L L+ AL PERDL+F+YLGL+ LYDRYFLH+ +R E+PQ FFMR+A GL+
Sbjct: 276 DPEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHVRSVRFELPQAFFMRVACGLA 335
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE+ AI FY+LLSSF+FM STPTLFN+GT+R QLSSC+L+TV DDL GIF++IK+
Sbjct: 336 LREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLSSCFLTTVADDLDGIFKAIKD 395
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT+VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 396 NALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 455
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLFSP + PD
Sbjct: 456 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEEDGMWTLFSPDETPD 515
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ GK F Y YE + G++++ K++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 516 LHDLTGKAFAGRYAYYEEKAARGELRVTKQVRAVDLWRRMLTMLFETGHPWITFKDPCNL 575
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS E+ VCNLGS+NL H+K+GKLD L +T+RIAM
Sbjct: 576 RSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVNHIKDGKLDHEHLARTVRIAM 635
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNV+D+N+Y + +A+ SNLRHRPVGLGIMGFQD L+I+++PY+S EA+ FAD+SME
Sbjct: 636 RMLDNVLDVNFYTIPEARTSNLRHRPVGLGIMGFQDALNILRLPYASDEAVSFADESMEA 695
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A S ELA E+GRY SY GSLW +G+LP DSL+L+++ RG++ + ++ S L+W
Sbjct: 696 IAYHAISGSVELAAERGRYPSYQGSLWSKGVLPLDSLELVDEARGAE-VDIDRSSRLDWD 754
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+ GMRNSNC+AIAPTATISNI GVS SIEP Y+NL++KSN+SG+FT +N +LV
Sbjct: 755 SLRQRVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLV 814
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE MI++LKYFDG++ +I R+PDDL+ +YATAFEI W+I+A + RQKWI
Sbjct: 815 RDLKARGLWDEVMISDLKYFDGSVGEIDRVPDDLKALYATAFEIDSAWLIDAAARRQKWI 874
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID------ 708
DQ+QSLN+YI+N SGKKLD Y+ AW RGLKTTYYLRS SA + +KS + G D
Sbjct: 875 DQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSATHVEKSTLK-GTDGKLNAV 933
Query: 709 SVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + G+ + K C + D CE+CQ
Sbjct: 934 AASVSVAPLNGHAAVASASEGWKSCRV-----DDPTCEACQ 969
>gi|333984784|ref|YP_004513994.1| ribonucleoside-diphosphate reductase subunit alpha [Methylomonas
methanica MC09]
gi|333808825|gb|AEG01495.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylomonas
methanica MC09]
Length = 930
Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/706 (64%), Positives = 564/706 (79%), Gaps = 6/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P Y++V ARLL+ ++ E G + Q D+ Y F++FI G+ +L++P+LAE
Sbjct: 208 IEIEPDYAKVAARLLLSQLRLEATGSALTQADMAEAYTGCFAEFIAAGVAAELIDPRLAE 267
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L ALL ERDLQF+YLGL+ LYDRYFLHI+G RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 268 FDLERLGQALLAERDLQFDYLGLQTLYDRYFLHIDGRRIELPQCFFMRVAMGLALNEIDR 327
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY LLSSF+FMCSTPTLFNSGT QLSSCYL+TV DDL GI++SIKENALL K
Sbjct: 328 ETRAIEFYRLLSSFDFMCSTPTLFNSGTRHPQLSSCYLTTVSDDLDGIYQSIKENALLQK 387
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+LGS IKGTNG SQGVIPFLKVVND AVAVNQGGKRKGA+CAYLE W
Sbjct: 388 YAGGLGNDWTPVRALGSRIKGTNGHSQGVIPFLKVVNDTAVAVNQGGKRKGAVCAYLENW 447
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D EEF+ELRKNTGD+RRR HDMN A WV DLFM+RV + WTLFSP D PDLH+ +G
Sbjct: 448 HLDFEEFLELRKNTGDERRRCHDMNTAAWVSDLFMQRVRDNAEWTLFSPVDTPDLHDLYG 507
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
F E+Y YE + + G+IKL+K+I A+ LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 508 AAFAEAYQAYEAKAERGEIKLYKRIGAVQLWRKMLTMLFETGHPWITFKDACNLRSPQQH 567
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNG--KLDPIKLKKTIRIAMRM 416
G+IHSSNLCTEITLNTS +E VCNLGS+NL H+ +G +LD KL++T+ AMRM
Sbjct: 568 AGVIHSSNLCTEITLNTSNDETAVCNLGSVNLAAHLVEHDGAWQLDADKLQRTVTTAMRM 627
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNV+DIN+YA KA+ +NLRHRPVGLG+MGF DCLH + + Y+S++A++FAD S E++C
Sbjct: 628 LDNVVDINFYATPKARNANLRHRPVGLGMMGFSDCLHRLGLAYASQDAVEFADYSAELLC 687
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYAY AS +LAE++GRYSS+ GSLW QG+LP D+L L + RG L V L+W L
Sbjct: 688 YYAYQASADLAEQRGRYSSFSGSLWQQGLLPPDTLARLSETRGD--LGVVAGGRLDWDAL 745
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R RI + GMRNSNCVAIAPTATISNI+GVSA+IEP Y+NL++KSNLSGEF +N LV+E
Sbjct: 746 RQRIAQVGMRNSNCVAIAPTATISNIVGVSAAIEPVYQNLYVKSNLSGEFIVVNAALVRE 805
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK GLWD M+A+LKYFDG+L+ I R+P D++ YATAFEI P W+IEA + RQKWIDQ
Sbjct: 806 LKTLGLWDAVMVADLKYFDGSLAAIERVPADVKARYATAFEIDPEWLIEAAARRQKWIDQ 865
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
SQSLN+Y++ +G KLD+ Y+LAW RGLKTTYYLR++ A +K+
Sbjct: 866 SQSLNLYVAAPTGGKLDQMYRLAWQRGLKTTYYLRTLGATAMEKTG 911
>gi|359781507|ref|ZP_09284731.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
psychrotolerans L19]
gi|359370571|gb|EHK71138.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
psychrotolerans L19]
Length = 971
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/722 (64%), Positives = 580/722 (80%), Gaps = 7/722 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLL+ ++ E + ++ Y + ++ KG++ +LL+
Sbjct: 211 VEREPNYSYVTARLLLDSLRAEGLSFLGVAESATHHEMADLYAKALPAYVAKGVELELLD 270
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKLA F+L+ L A+ ERD QF YLGL+ LYDRYFLH G R E+PQ FFMR+AMGL+
Sbjct: 271 PKLATFDLAKLGAAIDHERDQQFTYLGLQTLYDRYFLHSHGTRFELPQLFFMRVAMGLAH 330
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLL+SF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 331 MEQDKEARAIEFYNLLASFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 390
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 391 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 450
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP DVPDL
Sbjct: 451 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGNWTLFSPADVPDL 510
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE T+ GK+KL K I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 511 HDLYGKAFEERYEYYEALTEYGKLKLHKTIKAKDLWRKMLSMLFETGHPWLTFKDPCNLR 570
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD K+ +T++ A+R
Sbjct: 571 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIVDGKLDTAKVARTVKTAVR 630
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRPVG+GIMGFQD L++ I Y S A++FAD SME+I
Sbjct: 631 MLDNVIDINYYSVPQAENSNLKHRPVGMGIMGFQDALYLQHIAYGSDAAVQFADTSMEVI 690
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LAEE+G YSS+ GSLW QGILP DS K L +ERG+KY++V++SE+L+W
Sbjct: 691 SYYAIQASCDLAEERGSYSSFQGSLWSQGILPIDSEKRLIEERGAKYIEVDLSETLDWAP 750
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R KK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 751 LRERAKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 809
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI+EA S RQKWID
Sbjct: 810 DLKARGLWDSVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVEAASRRQKWID 869
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G +++V+ D
Sbjct: 870 QAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTGKLNAVSADP 929
Query: 715 IS 716
I+
Sbjct: 930 IT 931
>gi|192291020|ref|YP_001991625.1| ribonucleotide-diphosphate reductase subunit alpha
[Rhodopseudomonas palustris TIE-1]
gi|192284769|gb|ACF01150.1| ribonucleoside-diphosphate reductase, alpha subunit
[Rhodopseudomonas palustris TIE-1]
Length = 974
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/709 (62%), Positives = 574/709 (80%), Gaps = 7/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P Y++V+ARLL+ +++E + Q + +Y +YFS ++ GI ++L+
Sbjct: 214 VETEPDYAKVSARLLLDKLRREALSFVEGRPHQATQAQMAERYADYFSAYVKAGIAHELI 273
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P++ F++S L+ A+ PERDLQF+YLGL+ LYDRYFLH+ G R E+PQ FFMR+A G++
Sbjct: 274 DPEIGRFDVSKLAAAIKPERDLQFDYLGLQTLYDRYFLHVHGTRFELPQAFFMRVACGIA 333
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE AI+FY+LLSSF+FM STPTLFN+GT+R QLSSC+L+TVPDDL GIF+SIK+
Sbjct: 334 LREVDREAKAIEFYDLLSSFDFMASTPTLFNAGTLRPQLSSCFLTTVPDDLDGIFKSIKD 393
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT VR LG+ IKGTNG SQG++PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 394 NALLSKYAGGLGNDWTHVRGLGAHIKGTNGESQGIVPFLKVANDTAIAVNQGGKRKGAVC 453
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLFSP + PD
Sbjct: 454 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQNGPWTLFSPDETPD 513
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G+ F E Y YE + G++++ K+I A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 514 LHDLTGRAFAERYAFYEARAARGELRVTKQIRAVDLWRRMLTMLFETGHPWITFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS+ E+ VCNLGS+NL H+ +G+LD +L++T+ AM
Sbjct: 574 RSPQQHCGVVHSSNLCTEITLNTSEREVAVCNLGSVNLVNHVVDGRLDCARLERTVTTAM 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID+N+Y + +A+ SNLRHRPVGLG+MGFQD L+I+++PY+S EA+ FAD+SME
Sbjct: 634 RMLDNVIDVNFYTIPEARASNLRHRPVGLGLMGFQDALNILRLPYASDEAVAFADESMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y++ AS +LA E+GRY+SYDGSLW QGILP DS+ LL++ RG+ ++V+ L+W+
Sbjct: 694 IAYWSISASVDLAAERGRYASYDGSLWSQGILPLDSIDLLDEARGAA-IEVDRGSRLDWE 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+ GMRNSN +AIAPTATISNI GVS SIEP Y+NL++KSN+SG+FT +N +LV
Sbjct: 753 ALRKRVTATGMRNSNVMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNTHLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE MI++LKYFDG+L QI R+PDDL+ +YATAFEI W+IEA + RQKWI
Sbjct: 813 RDLKGRGLWDEVMISDLKYFDGSLGQIDRVPDDLKALYATAFEIDATWLIEAAARRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
DQ+QSLN+Y++N SGK LD Y+LAW RGLKTTYYLRS SA + +KS
Sbjct: 873 DQAQSLNLYLANPSGKTLDALYRLAWRRGLKTTYYLRSRSATHVEKSTL 921
>gi|92119122|ref|YP_578851.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
hamburgensis X14]
gi|91802016|gb|ABE64391.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
Length = 966
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/760 (59%), Positives = 587/760 (77%), Gaps = 17/760 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E DP Y++ +ARLL+ +++E ++ Q ++ +Y EYF ++ GI+N+LL
Sbjct: 213 VETDPDYAKASARLLLDKLRREALSLIAGRPEQATQAEMTGRYAEYFLGYVQTGIENELL 272
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P++ F+L L+ AL PERDLQF+YLG + LYDRYFLH+ G R E+PQ FFMR+A GL+
Sbjct: 273 DPEIGRFDLDRLAAALKPERDLQFDYLGFQTLYDRYFLHVRGTRFELPQAFFMRVACGLA 332
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE AI FYNLLSSF+FM STPTLFN+GT R+QLSSC+L+TV DDL GIF++IK+
Sbjct: 333 LREIDREDKAIAFYNLLSSFDFMASTPTLFNAGTQRAQLSSCFLTTVADDLDGIFKAIKD 392
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT+VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 393 NALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 452
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLFSP + PD
Sbjct: 453 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEEDGVWTLFSPNETPD 512
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ GK F E Y YE + G++++ K++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 513 LHDLTGKAFAERYAHYEGKAARGEMRVTKQVRAVDLWRRMLTMLFETGHPWITFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS E+ VCNLGS+NL H+ +GKLD L +T++ AM
Sbjct: 573 RSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVNHLHDGKLDHAHLARTVKTAM 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNV+++N+Y + +A+ SNLRHRPVGLG+MGFQD L+I+++PY+ EA+ FAD+SME
Sbjct: 633 RMLDNVLNVNFYTIPEARTSNLRHRPVGLGLMGFQDALNILRLPYACDEAVSFADESMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A S +LA E+GRY SY GSLW +GILP DSL L+++ RG+ + ++ S L+W+
Sbjct: 693 ISYWAISGSVDLAAERGRYPSYQGSLWSKGILPLDSLALVDEARGAP-IDLDRSSRLDWE 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+ GMRNSNC+AIAPTATISNI GVS SIEP Y+NL++KSN+SG+FT +N +LV
Sbjct: 752 ALRQRVMTVGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE MI++LKYFDG LS+I R+PDDL+ +YATAFEI W+I+A + RQKWI
Sbjct: 812 RDLKARGLWDEVMISDLKYFDGGLSRIDRVPDDLKALYATAFEIDSAWLIDAAARRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI++ SGKKLD Y+ AW RGLKTTYYLRS SA + +KS ++ +N
Sbjct: 872 DQAQSLNLYIADPSGKKLDALYRHAWKRGLKTTYYLRSRSATHVEKSTLKVTDGKLNAVS 931
Query: 715 ISIK-----GYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S+ G+ ++ E K C I D CE+CQ
Sbjct: 932 ASVSTAPLNGHAASVAESDGWKACRI-----DDPTCEACQ 966
>gi|85714831|ref|ZP_01045817.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
Nb-311A]
gi|85698317|gb|EAQ36188.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
Nb-311A]
Length = 956
Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/760 (59%), Positives = 586/760 (77%), Gaps = 17/760 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E DP Y++ +ARLL+ +++E ++ Q ++ +Y +YF ++ GIDN+LL
Sbjct: 203 VETDPDYAKASARLLLDKLRREALSFVSGRSEQATQAEMAERYADYFRAYVRTGIDNELL 262
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ ++ F+L L+ AL PERDL+F+YLGL+ LYDRYFLH+ G+R E+PQ FFMR+A GL+
Sbjct: 263 DLEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHVRGVRFELPQAFFMRVACGLA 322
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE+ AI FY+LLSSF+FM STPTLFN+GT+R QLSSC+L+TV DDL GIF++IK+
Sbjct: 323 LREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLSSCFLTTVADDLDGIFKAIKD 382
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT+VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 383 NALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 442
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLFSP + PD
Sbjct: 443 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMRRVEEDGMWTLFSPDETPD 502
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ GK F E Y YE + G++++ K++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 503 LHDLTGKAFTERYACYEEKAARGELRVTKQVRAVDLWRRMLTMLFETGHPWITFKDPCNL 562
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS E+ VCNLGS+NL H+K+GKLD L +T+RIAM
Sbjct: 563 RSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVSHIKDGKLDHEHLARTVRIAM 622
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNV+D+N+Y + +A+ SNLRHRPVGLG+MGFQD L+I+++PY+S A+ FAD+SME
Sbjct: 623 RMLDNVLDVNFYTIPEARTSNLRHRPVGLGVMGFQDALNILRLPYASNGAVSFADESMEA 682
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA S ELA E+GRY SY GSLW +GILP DSL L+++ RG+ + ++ S L+W
Sbjct: 683 IAYYAISGSVELAAERGRYPSYQGSLWSKGILPLDSLTLVDEARGAA-VDIDRSSRLDWD 741
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR + GMRNSNC+AIAPTATISNI GVS SIEP Y+NL++KSN+SG+FT +N +LV
Sbjct: 742 SLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLV 801
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE MI++LKYFDG++ QI R+PDDL+ +YATAFEI +W+I+A + RQKWI
Sbjct: 802 RDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATAFEIDSSWLIDAAARRQKWI 861
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N SGKKLD Y+ AW RGLKTTYYLRS SA + +KS + +N
Sbjct: 862 DQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSATHVEKSTLKGTDGKLNAVA 921
Query: 715 IS-----IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + G+ + K C I CE+CQ
Sbjct: 922 ASVSAAPLNGHATAASASEGWKSCRIEDPT-----CEACQ 956
>gi|408374788|ref|ZP_11172470.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
hongdengensis A-11-3]
gi|407765316|gb|EKF73771.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
hongdengensis A-11-3]
Length = 961
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/754 (61%), Positives = 592/754 (78%), Gaps = 12/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P YS VTARLLM I+ E + Q ++ Y + +I KGI+ +LL+
Sbjct: 215 IEVEPNYSLVTARLLMDKIRAEALQFLGVAERANQEEMEALYGQALQAYITKGIELELLS 274
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L EF+L L A+ ERDLQF+YLGL+ LYDRYF+H RIE+PQ FFMR+AMGL++
Sbjct: 275 PQLGEFDLEKLGAAMKGERDLQFSYLGLQTLYDRYFIHHNDTRIELPQCFFMRVAMGLAV 334
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 335 EEDDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 394
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 395 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 454
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV+ + WTLFSP D PDL
Sbjct: 455 YLETWHMDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVLNEEDWTLFSPNDTPDL 514
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE++Y+ YE +T+ G++KLFK+I A+ LWRK+LSMLFETGHPW TFKD CN+R
Sbjct: 515 HDLYGEAFEKAYLAYEEKTRSGELKLFKRIPAINLWRKMLSMLFETGHPWFTFKDPCNLR 574
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNTS++EI VCNLGS+NL H+ + LD KL++T+ A+R
Sbjct: 575 SPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLAQHIGDNGLDTDKLQRTVNTAVR 634
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN++HRPVGLGIMGFQD L+ I Y+S++A+ FAD+SME +
Sbjct: 635 MLDNVIDINYYSVPQAERSNMKHRPVGLGIMGFQDALYKQGIAYASEQAVDFADKSMEAV 694
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LAEE+G Y ++DGSLW QGILP DS+ +L K+RG +Y KV+ S++L+W
Sbjct: 695 SYYAIQASAKLAEERGAYQTFDGSLWSQGILPIDSIDILVKQRGEEYCKVDRSQTLDWNS 754
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R +K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 755 VREMARK-GMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 813
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
LK++GLWD M+ +LKY+DG++ I R+PDDL++ Y TAFE+ P W++EA S RQKWID
Sbjct: 814 ALKERGLWDNVMVNDLKYYDGSVLPIERVPDDLKEQYRTAFEVEPRWLVEAASRRQKWID 873
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ +GKKLD TYK+AWL GLKTTYYLR+I A A+KS G L+ +
Sbjct: 874 QAQSLNLYIAEANGKKLDVTYKMAWLLGLKTTYYLRAIGATQAEKSTINDG----KLNRV 929
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S K + E I+D +CE+CQ
Sbjct: 930 SSK-VEEPAAEFGQAADVPQACSIDD-PDCEACQ 961
>gi|384082548|ref|ZP_09993723.1| ribonucleotide-diphosphate reductase subunit alpha [gamma
proteobacterium HIMB30]
Length = 957
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/755 (61%), Positives = 593/755 (78%), Gaps = 16/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P Y+ VTARLL+ I+ + ++ Q ++ Y F+ ++++L++
Sbjct: 213 VEKEPNYTYVTARLLLDDIRAKALTRLNVAEKATQFEMESLYPMALKAFLELAVESELVS 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
L E++L ++ AL+ ERD QF YLGL+ LYDRYF+H + +RIE+PQ FFMRIAMGL+L
Sbjct: 273 KDLLEYDLDRMAGALIAERDNQFTYLGLQTLYDRYFIHKDDVRIELPQVFFMRIAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE+ AI+FY LLSSF++M STPTLFNSGT+RSQLSSCYL+TVPD+L GI+ +I++N
Sbjct: 333 REENREERAIEFYQLLSSFDYMASTPTLFNSGTLRSQLSSCYLTTVPDNLDGIYGAIRDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV + + WTLFSP PDL
Sbjct: 453 YLETWHMDIEEFLELRKNTGDDRRRTHDMNSANWVPDLFMKRVFEDAEWTLFSPSTCPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ FG FE Y YE T+ G+IK FK++ A LWRK+LSMLFETGHPWITFKDACN+R
Sbjct: 513 HDLFGLAFENRYKEYEAMTQTGEIKHFKRVQAKDLWRKMLSMLFETGHPWITFKDACNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIAM 414
SPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ K+G LD KL KT++ A+
Sbjct: 573 SPQQHAGVVHSSNLCTEITLNTSVDEIAVCNLGSVNLRQHVTKDGGLDREKLAKTVKTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYYAV +A+ SN++HRPVGLGIMGFQD L+ + IPY S EA++FAD+SME+
Sbjct: 633 RMLDNVIDINYYAVPQAENSNMKHRPVGLGIMGFQDALYELGIPYGSDEAVQFADESMEV 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS +LA E+G YSS+DGSLW QG+LP DS++ L +ERG+ YL V+ S L+W
Sbjct: 693 ISYYAIDASADLARERGAYSSFDGSLWSQGVLPIDSIEKLREERGANYLNVDTSAQLDWT 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+LR + K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 753 ELREKAKD-GMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK++GLWD M+ +LKY+DG++ Q++RIPDDL+ +YAT+FE+ WI+EA + RQKWI
Sbjct: 812 RDLKERGLWDNVMVNDLKYYDGSVQQVARIPDDLKALYATSFELETRWIVEAAARRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLNIYI+N +GKKLD TY++AW GLKTTYYLR++ A A+KS I+ NL+
Sbjct: 872 DQAQSLNIYIANANGKKLDVTYRMAWFSGLKTTYYLRALGATQAEKST----INKSNLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S + + K C + D +CE+CQ
Sbjct: 928 VSATQATQAAEPAAVPKACSL-----DDPDCEACQ 957
>gi|386288749|ref|ZP_10065889.1| ribonucleotide-diphosphate reductase subunit alpha [gamma
proteobacterium BDW918]
gi|385278304|gb|EIF42276.1| ribonucleotide-diphosphate reductase subunit alpha [gamma
proteobacterium BDW918]
Length = 965
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/712 (63%), Positives = 584/712 (82%), Gaps = 6/712 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+ YS VTARLL+ ++ E + Q D+ I Y + ++ KG + +LL+
Sbjct: 211 VEKEHNYSLVTARLLLDKLRAEALNFLGVAQSATQHDMAIYYPQALPIYLRKGAELELLD 270
Query: 56 PKL-AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
P+L +E++++ L A+ PERD+QF+YLGL+ LYDRYF+H +RIE+PQ FFMR+AMGL+
Sbjct: 271 PRLESEYDVAALGEAIKPERDMQFHYLGLQTLYDRYFIHSNEVRIELPQIFFMRVAMGLA 330
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +R AI+FY+LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++
Sbjct: 331 MNEEDRNARAIEFYDLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQD 390
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSKYAGGLGNDWT VR LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 391 NAMLSKYAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 450
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLE+WH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 451 AYLESWHIDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFQDGDWTLFSPNNVPD 510
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +GK FEE + YE T+ G+IKL+K++ A LWRKILSMLFETGHPWITFKD CN+
Sbjct: 511 LHDLYGKAFEERFEHYEELTRKGEIKLYKRVKAADLWRKILSMLFETGHPWITFKDPCNL 570
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNTSK+EI VCNLGS+NL H+ + LD K++KT++ A+
Sbjct: 571 RSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSVNLAQHIGDNGLDLAKVEKTVKTAV 630
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLG+MGFQD L+ +PYSS EA++FAD+SME
Sbjct: 631 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGLMGFQDALYKQHLPYSSDEAVEFADRSMEA 690
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS++LA E+G Y SY+GSLW +GILP DS+++L +ERG+ Y++V+ S++L+W
Sbjct: 691 ISYYAIKASSDLAAERGSYQSYEGSLWSRGILPIDSVEILVQERGADYIEVDRSQTLDWD 750
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 751 SLREVVKAQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+LK +GLWD M+ +LKY++G++S+I RIPDDL+ +YATAFE+ P W+++A S RQKW+
Sbjct: 811 KDLKARGLWDAVMVNDLKYYEGSVSKIDRIPDDLKALYATAFEVEPRWLVDAASRRQKWL 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQ+QSLN+YI+ +GKKLD TY++AW RGLKTTYYLR+++A+ +KS G
Sbjct: 871 DQAQSLNLYIAGANGKKLDITYRMAWYRGLKTTYYLRALAASSTEKSTVSQG 922
>gi|390450342|ref|ZP_10235935.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratireductor
aquibiodomus RA22]
gi|389662690|gb|EIM74247.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratireductor
aquibiodomus RA22]
Length = 959
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/755 (60%), Positives = 590/755 (78%), Gaps = 11/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P Y+ V+ARLL+ +++E ++ Q ++ +Y YF F+ KGI N L+
Sbjct: 210 VEQEPDYAFVSARLLLDKLRREALTFVSERPEQATQAEMSERYARYFPDFVAKGIANDLI 269
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA F+L L AL PERDL F +LGL+ LYDRYFLH G R E+PQ FFMR+AMGL+
Sbjct: 270 DPELARFDLERLGAALRPERDLNFQFLGLQTLYDRYFLHANGTRFELPQAFFMRVAMGLA 329
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FY+LLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+++K+
Sbjct: 330 VREIDREARAIEFYDLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADDLDGIFKAVKD 389
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 390 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 449
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV WTLFSP + PD
Sbjct: 450 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMERVAADGPWTLFSPDETPD 509
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +GK F ++Y YE + + G++++FK + A+ LWR++L+MLFETGHPW+TFKD CNI
Sbjct: 510 LHDLYGKAFRKAYEAYEAKAEAGELRVFKTVRAVDLWRRMLTMLFETGHPWVTFKDPCNI 569
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQ HVG++HSSNLCTEITLNTSK+E+ VCNLGS+NL H+ +G LD +L +T+ AM
Sbjct: 570 RSPQGHVGVVHSSNLCTEITLNTSKDEVAVCNLGSVNLVNHIADGALDLERLARTVGTAM 629
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A++SNLRHRPVGLG+MGFQD L ++IPY+S++A+ FAD SME
Sbjct: 630 RMLDNVIDINFYTIPEARHSNLRHRPVGLGLMGFQDALQKLRIPYASEDAVAFADASMEA 689
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS ELA+E+GRY +++ SLW +GILP DS++LLE+ R ++++ + +L+W+
Sbjct: 690 ISYYAISASVELADERGRYPTFEKSLWSKGILPIDSIRLLEEARPG--VEMDNAATLDWE 747
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+KK GMRNSNC+AIAPTATISNI GVS SIEP Y+NL +KSN+SG+FT +N L+
Sbjct: 748 SLRKRVKKVGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLFVKSNMSGDFTVVNAALI 807
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWDE M+++LKYFDG++ QI R+PDDL+ +YATAFEI W+IEA S RQKWI
Sbjct: 808 HDLKDRGLWDEVMMSDLKYFDGSIGQIDRVPDDLKALYATAFEIDSAWLIEAASRRQKWI 867
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N SGKKLDE Y+ AW +GLKTTYYLRS SA + +KS + G D L+
Sbjct: 868 DQAQSLNLYIANPSGKKLDELYRHAWKKGLKTTYYLRSRSATHVEKSTLK-GTDG-KLNA 925
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S + I N I+D ECE+CQ
Sbjct: 926 VSASSVSAEPIAIDPNAAWTKACAIDD-PECEACQ 959
>gi|422297662|ref|ZP_16385294.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
avellanae BPIC 631]
gi|422592220|ref|ZP_16666842.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422653513|ref|ZP_16716277.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330880141|gb|EGH14290.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330966560|gb|EGH66820.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|407990862|gb|EKG32853.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
avellanae BPIC 631]
Length = 970
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+TI +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW QGILP DS ++L ++RG KY+ V++ ESL+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|399908675|ref|ZP_10777227.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas sp.
KM-1]
Length = 983
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/721 (64%), Positives = 574/721 (79%), Gaps = 9/721 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P Y+ VTARLL +++E +E ++ YK F +++ +GI+ + L+
Sbjct: 198 VEKEPNYTYVTARLLQDSLRREALSFLGVAEEATFGEMAELYKPAFIEYVARGIEYEQLD 257
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LAEF+L L +AL RD F YLGL+ LYDRYF+H + +R E+PQ FMR+AMGL+L
Sbjct: 258 PRLAEFDLERLGDALDHTRDNAFTYLGLQTLYDRYFIHRDDVRYELPQVMFMRVAMGLAL 317
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE +RE AI+FY LLSSF++M STPTLFNSGT+RSQLSSCYL+TVPDDL GI+ +I++N
Sbjct: 318 NEDDREARAIEFYELLSSFDYMASTPTLFNSGTVRSQLSSCYLTTVPDDLDGIYSAIRDN 377
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 378 ALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 437
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV WTLFSP PDL
Sbjct: 438 YLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDKEWTLFSPATCPDL 497
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G FE+ Y YE T+ G++KLFK++ A LWRK+LSMLFETGHPWITFKD CN+R
Sbjct: 498 HDLYGAAFEQRYEEYEAMTRSGQLKLFKRVRAKDLWRKMLSMLFETGHPWITFKDPCNLR 557
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS +EI VCNLGSINL H+ +GKLD KLKK++R A+R
Sbjct: 558 SPQQHAGVVHSSNLCTEITLNTSVDEIAVCNLGSINLAQHVVDGKLDDAKLKKSVRTAVR 617
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV +A+ SNL+HRPVGLGIMGFQD L+ I Y+S+EA++FAD+SME++
Sbjct: 618 MLDNVIDINYYAVPQARNSNLKHRPVGLGIMGFQDALYAQDIAYASEEAVEFADRSMELV 677
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS++LA E+G Y S++GSLW QGILP DS+ L ERG KY++V+ S +W +
Sbjct: 678 SYHAIEASSDLAAERGHYESFEGSLWSQGILPIDSIDKLVTERGEKYIEVDTGASQDWDR 737
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R +I + GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 738 IRKKIAEQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNAYLVH 797
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE MI +LKY+DG+ I RIPDDL+ YATAFE+ P W++EA S RQKWID
Sbjct: 798 DLKARGLWDEVMINDLKYYDGSAQPIERIPDDLKAKYATAFEVEPKWLVEAASRRQKWID 857
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI SGKKLD TY++AW RGLKTTYYLR++ A +KS + G NL+ +
Sbjct: 858 QAQSLNLYIKGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEKSTVDRG----NLNAV 913
Query: 716 S 716
S
Sbjct: 914 S 914
>gi|254282207|ref|ZP_04957175.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[gamma proteobacterium NOR51-B]
gi|219678410|gb|EED34759.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[gamma proteobacterium NOR51-B]
Length = 961
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/754 (61%), Positives = 579/754 (76%), Gaps = 16/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS ARLL+ ++ E + Q D+ I Y FI +GI+ +LL
Sbjct: 219 IEQEPNYSYAAARLLLDNLRAEGLSFMGVAELATQQDMTIHYPAALKAFIKRGIELELLA 278
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L +F+L L +ALLPERDLQF+YLGL+ LYDRYF+H + R E+PQ FFMR+AMGL+
Sbjct: 279 PDLQDFDLEELGSALLPERDLQFSYLGLQTLYDRYFIHSDNTRFELPQIFFMRVAMGLAA 338
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 339 REEAKNARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLFGIYGAIQDN 398
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNG+SQG++PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 399 AMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGAVCA 458
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 459 YLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFSPNDVPDL 518
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE G++KL K + A LWRK+L M+FETGHPW+TFKD CN+R
Sbjct: 519 HDLYGKAFEERYQQYEAMAASGELKLHKTLKAQSLWRKMLGMIFETGHPWMTFKDPCNLR 578
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H++NG L+ KL+ TIR A+R
Sbjct: 579 SPQQHCGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIENGVLNLDKLRSTIRTAIR 638
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN RHRP+G+G+MGFQD L+ + + Y S +A+ FADQSME I
Sbjct: 639 MLDNVIDINYYSVPQAEQSNFRHRPIGMGVMGFQDALYKLDVAYGSDQAVSFADQSMEAI 698
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS+ELAEE+G YSSY+GSLW QGI P DSL LL + RG Y++VN +S++W
Sbjct: 699 SYYAIEASSELAEERGSYSSYEGSLWSQGIFPHDSLDLLIQHRGEDYIQVNRDQSMDWAP 758
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
L+ ++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLVK
Sbjct: 759 LKAKVAANGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVK 818
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD+ M+ +LKY+DG++ I RIPDDL+ YATAFE+ P W++++ S RQKWID
Sbjct: 819 DLKARGLWDKVMVNDLKYYDGSVQAIDRIPDDLKAKYATAFEVEPRWLVDSASRRQKWID 878
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+N SGKKLD TY++AW GLKTTYYLRS++A +KS E G L+ +
Sbjct: 879 QAQSLNLYINNASGKKLDVTYRMAWFNGLKTTYYLRSLAATGTEKSTVESG----KLNAV 934
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + Q + C + D +CE+CQ
Sbjct: 935 S--SGSATPQPAPVPQACSL-----DDPDCEACQ 961
>gi|398849027|ref|ZP_10605807.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM84]
gi|398245809|gb|EJN31317.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM84]
Length = 958
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/757 (61%), Positives = 588/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KGI+ +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLSVADSATHHEMADLYAKALPAYVAKGIEFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 272 PALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 512 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 571
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 572 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 631
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 632 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 691
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 692 SYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWAP 751
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 752 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 810
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 811 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 870
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 871 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 926
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 927 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 958
>gi|213969510|ref|ZP_03397646.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
syringae pv. tomato T1]
gi|301385966|ref|ZP_07234384.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. tomato Max13]
gi|302058709|ref|ZP_07250250.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. tomato K40]
gi|302134400|ref|ZP_07260390.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213925606|gb|EEB59165.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
syringae pv. tomato T1]
Length = 970
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGRAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+TI +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW QGILP DS ++L ++RG KY+ V++ ESL+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|77460467|ref|YP_349974.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fluorescens Pf0-1]
gi|77384470|gb|ABA75983.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
fluorescens Pf0-1]
Length = 964
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/757 (62%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+TI +A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLKRTIDVAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN RHRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +G+LP DS ++L + RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGSYETFQGSLWSKGVLPLDSQQILIEARGQKYIDVDLTESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|28868877|ref|NP_791496.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. tomato str. DC3000]
gi|422658140|ref|ZP_16720576.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|28852116|gb|AAO55191.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331016766|gb|EGH96822.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 970
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+TI +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW QGILP DS ++L ++RG KY+ V++ ESL+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|146308171|ref|YP_001188636.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
mendocina ymp]
gi|145576372|gb|ABP85904.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
mendocina ymp]
Length = 968
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/715 (65%), Positives = 576/715 (80%), Gaps = 13/715 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF--------GKEIKQIDIPIKYKEYFSKFINKGIDNK 52
+E++P YS VTARLLM I+ E + +D+ Y + +++KG++ +
Sbjct: 212 VEREPNYSYVTARLLMDNIRAEALTFLGITQSATHHEMVDL---YAKALPAYVDKGVEFE 268
Query: 53 LLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
LL+PKL E++L L AL ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMG
Sbjct: 269 LLDPKLKEYDLEKLGKALNHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMG 328
Query: 113 LSLNES-NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFES 171
L++ E NRE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +
Sbjct: 329 LAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYSA 388
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKG 231
I +NA+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKG
Sbjct: 389 IHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 448
Query: 232 AICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291
A+CAYLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +
Sbjct: 449 AVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSE 508
Query: 292 VPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
VPDLH+ GK FEE Y YE + GKIKL+K I A LWRK+LSMLFETGHPW+TFKD
Sbjct: 509 VPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDP 568
Query: 352 CNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
CN+RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD KL +T++
Sbjct: 569 CNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIVDGKLDIEKLGRTVK 628
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+RMLDNVIDINYY+V +A+ SNL+HRPVGLG+MGFQD L++ I Y S AI+FAD+S
Sbjct: 629 TAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQHIAYGSDAAIEFADRS 688
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
ME I YYA AS +LAEE+G YS+++GSLW +GILP DS ++L + RG KY+ V++SESL
Sbjct: 689 MEAISYYAIQASCDLAEERGAYSTFEGSLWSKGILPLDSQQILIEARGQKYIDVDLSESL 748
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR R+KK G+RNSN +AIAPTATISNIIGVS SIEPTY+NL++KSNLSGEFT IN
Sbjct: 749 DWAPLRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINP 807
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQ
Sbjct: 808 YLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQ 867
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
KWIDQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 922
>gi|397696776|ref|YP_006534659.1| ribonucleoside-diphosphate reductase subunit alp [Pseudomonas
putida DOT-T1E]
gi|421524166|ref|ZP_15970791.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida LS46]
gi|397333506|gb|AFO49865.1| Ribonucleoside-diphosphate reductase subunit alp [Pseudomonas
putida DOT-T1E]
gi|402751977|gb|EJX12486.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida LS46]
Length = 959
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 586/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTTKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ VN+ E+L+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVNLEETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK + LWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|424068857|ref|ZP_17806306.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|424073282|ref|ZP_17810700.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|440722534|ref|ZP_20902912.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae BRIP34876]
gi|440729378|ref|ZP_20909558.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae BRIP34881]
gi|443642840|ref|ZP_21126690.1| Ribonucleotide-disphosphate reductase, alpha subunit [Pseudomonas
syringae pv. syringae B64]
gi|407996203|gb|EKG36687.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|407996263|gb|EKG36742.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|440358701|gb|ELP96041.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae BRIP34881]
gi|440361122|gb|ELP98364.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae BRIP34876]
gi|443282857|gb|ELS41862.1| Ribonucleotide-disphosphate reductase, alpha subunit [Pseudomonas
syringae pv. syringae B64]
Length = 970
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/769 (61%), Positives = 588/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVTAGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|167035229|ref|YP_001670460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida GB-1]
gi|166861717|gb|ABZ00125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
putida GB-1]
Length = 959
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 588/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRPVGLGIMGFQD L++ I Y S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|148546453|ref|YP_001266555.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida F1]
gi|395447645|ref|YP_006387898.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida ND6]
gi|148510511|gb|ABQ77371.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
putida F1]
gi|388561642|gb|AFK70783.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida ND6]
Length = 959
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 586/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ VN+ E+L+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVNLEETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK + LWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|398873083|ref|ZP_10628349.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM74]
gi|398200699|gb|EJM87608.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM74]
Length = 964
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 590/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRGEGLGFLGVAESATHHEMADLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PELASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIADGKLDTAKLQRTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSNAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYDTFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|26987914|ref|NP_743339.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida KT2440]
gi|24982623|gb|AAN66803.1|AE016309_5 ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440]
Length = 959
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/757 (61%), Positives = 586/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTTKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ VN+ E+L+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVNLEETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK + LWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|170720378|ref|YP_001748066.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida W619]
gi|169758381|gb|ACA71697.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
putida W619]
Length = 959
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/757 (61%), Positives = 585/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KG++ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYIAKGVEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ VN+ E+L+W
Sbjct: 693 SYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVNLEETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKG---YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S G + K C I D +CE+CQ
Sbjct: 928 SSGGDSAPAQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|386010830|ref|YP_005929107.1| protein NrdA [Pseudomonas putida BIRD-1]
gi|313497536|gb|ADR58902.1| NrdA [Pseudomonas putida BIRD-1]
Length = 959
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/757 (61%), Positives = 586/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTTKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ VN+ E+L+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVNLEETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK + LWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|409431275|ref|ZP_11262649.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
HYS]
Length = 962
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/755 (61%), Positives = 586/755 (77%), Gaps = 12/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KG++ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYIAKGVEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 274 PALADFDLDKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 514 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 573
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 574 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTTKLQRTVNTAVR 633
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 634 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 693
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 694 SYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWAP 753
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 754 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 812
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 813 DLKARGLWDPVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 872
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G +++V+
Sbjct: 873 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSGG 932
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S K C I D +CE+CQ
Sbjct: 933 DSAPVQAAPAGPAPVPKACAI-----DEPDCEACQ 962
>gi|421615753|ref|ZP_16056773.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri KOS6]
gi|409782289|gb|EKN61854.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri KOS6]
Length = 966
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/763 (60%), Positives = 588/763 (77%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + ++ KG+ +LL+
Sbjct: 209 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYVEKGVQFELLD 268
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L E++L+ L A+ E+D QF YLGL+ LYDRYF+H + +R E+PQ FFMR+AMGL++
Sbjct: 269 PRLKEYDLAKLGAAINHEQDQQFTYLGLQTLYDRYFIHKDNVRFELPQIFFMRVAMGLAI 328
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+++I++N
Sbjct: 329 EEEQREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDAIRDN 388
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 389 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 448
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV TWTLFSP DVPDL
Sbjct: 449 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGTWTLFSPSDVPDL 508
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + GKIK +K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 509 HDLTGKAFEERYEYYEALIEYGKIKNYKTLQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 568
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL HM +GKLD KL++T+R A+R
Sbjct: 569 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPNHMVDGKLDTAKLERTVRTAVR 628
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S AI FAD+SME +
Sbjct: 629 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIDFADKSMEAV 688
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 689 SYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEARGQKYIDVDLTESLDWAP 748
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 749 VRARVKN-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 807
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 808 DLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 867
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 868 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNAV 923
Query: 716 SIKGYNKN---------LQEIKNNKKCLINSEINDVNECESCQ 749
S G + E+ + + D +CE+CQ
Sbjct: 924 SSGGNSGTSAAPAKAAPAPEMSAGPAPVPKACAIDEPDCEACQ 966
>gi|381153010|ref|ZP_09864879.1| ribonucleoside-diphosphate reductase, alpha subunit
[Methylomicrobium album BG8]
gi|380884982|gb|EIC30859.1| ribonucleoside-diphosphate reductase, alpha subunit
[Methylomicrobium album BG8]
Length = 935
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/706 (64%), Positives = 566/706 (80%), Gaps = 6/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P Y++V ARLL+ +++E G+ + Q D+ +Y + F++F+ G+ +LL+ +L E
Sbjct: 211 IEAEPDYAKVAARLLLSNLRQEATGQPLTQADMAERYADCFAEFLAAGVAAELLDKRLLE 270
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L AL ERDLQF+YLGL+ LYDRYFL++EG RIE+PQ FFMR+AMGL+LNE +R
Sbjct: 271 FDLPRLGRALQAERDLQFDYLGLQTLYDRYFLNVEGRRIELPQCFFMRVAMGLALNEIDR 330
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FY +LSSF+FMCSTPTLFNSGT QLSSCYL+TV DDL GI++SIKENALL K
Sbjct: 331 ETKAIEFYQVLSSFDFMCSTPTLFNSGTRHPQLSSCYLTTVSDDLDGIYQSIKENALLQK 390
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGGLGNDWT VR+LGS IKGTNG SQGVIPFLKVVND AVAVNQGGKRKGA+CAYLE W
Sbjct: 391 YAGGLGNDWTPVRALGSRIKGTNGHSQGVIPFLKVVNDTAVAVNQGGKRKGAVCAYLENW 450
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D EEF+ELRKNTGD+RRR HDMN A WV DLFM+RV WTLFSP DVPDLH+ +G
Sbjct: 451 HLDFEEFLELRKNTGDERRRAHDMNTAAWVSDLFMQRVRSNGDWTLFSPVDVPDLHDLYG 510
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
F E+Y YE + + G+IKL+K++ A+ LWRK+L+MLFETGHPWITFKDACN+RSPQQH
Sbjct: 511 GAFAEAYQAYEAKAERGEIKLYKRVGAVQLWRKMLTMLFETGHPWITFKDACNLRSPQQH 570
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNG--KLDPIKLKKTIRIAMRM 416
G+IHSSNLCTEITLNTS +E VCNLGS+NL H+ ++G +LD KL++TI AMRM
Sbjct: 571 AGVIHSSNLCTEITLNTSADETAVCNLGSVNLPAHLVERDGVWQLDADKLQRTIATAMRM 630
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDIN+YA KA+ +NLRHRPVGLG+MGF DCLH + + Y+S EA++FAD+S EM+C
Sbjct: 631 LDNVIDINFYATVKARNANLRHRPVGLGMMGFSDCLHKLGVSYASPEALEFADRSAEMLC 690
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYAY AS +LAE++GRYSS+ GSLW QG+LP D+L L + RG L V S L+W L
Sbjct: 691 YYAYRASADLAEQRGRYSSFVGSLWQQGVLPPDTLARLIETRGD--LGVAASGQLDWHAL 748
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R RI + GMRNSNCVAIAPTATI+NI+GVSASIEP Y+NL++KSNLSGEFT +N LV+E
Sbjct: 749 RERIAQVGMRNSNCVAIAPTATIANIVGVSASIEPVYQNLYVKSNLSGEFTVVNAALVRE 808
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK LWD M+A+LKYFDG+L+ I R+P+ ++ YATAFEI P W+IEA + RQKWIDQ
Sbjct: 809 LKALDLWDAVMVADLKYFDGSLAAIERVPETIKARYATAFEIEPEWLIEAAARRQKWIDQ 868
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
SQSLN+Y++ +G KLD Y+LAW RGLKTTYYLR++ A +K+
Sbjct: 869 SQSLNLYVAAPTGSKLDRLYRLAWQRGLKTTYYLRTLGATAMEKTG 914
>gi|53804298|ref|YP_114078.1| ribonucleotide-diphosphate reductase subunit alpha [Methylococcus
capsulatus str. Bath]
gi|53758059|gb|AAU92350.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylococcus
capsulatus str. Bath]
Length = 969
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/765 (61%), Positives = 597/765 (78%), Gaps = 23/765 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF------GKEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++ YS V ARLL+ +++E Q ++ +Y EYF ++ +G++ +LL
Sbjct: 212 IEQESNYSYVAARLLLDALRREALSFLGHGAVSATQDEMSERYGEYFKDYVKRGVELELL 271
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA F+L L AL PERDLQFNYLGL+ LYDRYF+H IR E+PQ FFMR+AMGL+
Sbjct: 272 SPELARFDLQRLGEALKPERDLQFNYLGLQTLYDRYFIHSGDIRFELPQAFFMRVAMGLA 331
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE+ AI+FY+LLSSF+FM STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +IK+
Sbjct: 332 IQEVDREERAIEFYDLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDDLDGIYSAIKD 391
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 392 NALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 451
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFMKRV ++ WTLFSP D PD
Sbjct: 452 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEEREWTLFSPNDTPD 511
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G+ FE Y YE + G+IKL+K++ A+ LWRK+LSMLFETGHPW+ FKD CN+
Sbjct: 512 LHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGHPWLAFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
R QH G++HSSNLCTEITL+T+ NEI VCNLGS+NL H+ +G LD KL++TI
Sbjct: 572 RYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHITPDGALDTEKLQRTIATG 631
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVIDINYY+V +A+ SNLRHRPVGLGIMGFQD L+ +++PY+S+EA+ FAD SME
Sbjct: 632 MRMLDNVIDINYYSVPQARRSNLRHRPVGLGIMGFQDALYKLRLPYASQEAVAFADLSME 691
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AS +LA E+GRYSS+DGSLW +GILP DS+ LLE+ RG YL+++ S++L+W
Sbjct: 692 AVSYYAIQASCDLAAERGRYSSFDGSLWSRGILPIDSIALLEEGRGG-YLQMDRSQTLDW 750
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR R++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT +N YL
Sbjct: 751 NALRERVRTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVVNPYL 810
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK GLWD MI +LKY+DG++ +I RIP+ L+++YATAFEI W+IEAGS RQKW
Sbjct: 811 VRDLKTLGLWDAVMINDLKYYDGSVQKIERIPETLKQLYATAFEIDARWLIEAGSRRQKW 870
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN-FEMGIDSVNL 712
+DQ+QSLN+Y++ SGKKLD YKLAW+RGLKTTYYLRS+ A + +KS F+ +++V
Sbjct: 871 LDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKTTYYLRSLGATHVEKSTAFDGKLNAVKT 930
Query: 713 DEI--SIKGYNKNLQEIKNN------KKCLINSEINDVNECESCQ 749
D I +I G + L+ + + K CLI D CE+CQ
Sbjct: 931 DPIDDAIPGL-RPLETVYADTRPAEPKACLI-----DDPTCEACQ 969
>gi|325272775|ref|ZP_08139119.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
TJI-51]
gi|324102082|gb|EGB99584.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
TJI-51]
Length = 959
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/757 (61%), Positives = 586/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KG++ +LL+
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVAESATHHEMADLYAKALPAYVEKGVEFELLD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L ++L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALKGYDLERLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHINDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ VN+ ESL+W
Sbjct: 693 SYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVNLEESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|330811234|ref|YP_004355696.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|378952349|ref|YP_005209837.1| protein NrdA [Pseudomonas fluorescens F113]
gi|423698791|ref|ZP_17673281.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens Q8r1-96]
gi|327379342|gb|AEA70692.1| Ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|359762363|gb|AEV64442.1| NrdA [Pseudomonas fluorescens F113]
gi|387996899|gb|EIK58229.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens Q8r1-96]
Length = 963
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/756 (61%), Positives = 587/756 (77%), Gaps = 12/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMVDLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS ++L +RG KY+ V+++ESL+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIAQRGQKYIDVDLNESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
S G + + + + ++E CE+CQ
Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|387131540|ref|YP_006294430.1| ribonucleotide reductase subunit alpha [Methylophaga sp. JAM7]
gi|386272829|gb|AFJ03743.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Methylophaga sp. JAM7]
Length = 955
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/764 (60%), Positives = 596/764 (78%), Gaps = 21/764 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EKDP YS + ARLLM I++E K+ KQ ++ Y +YF +I+ I+++LL
Sbjct: 198 IEKDPAYSALAARLLMDGIRREALSFVYKTHKQAKQSEMAEIYPDYFKSYIHTAIEHELL 257
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +LA F+L L AL PE D +F YLGL+ LYDRYF+H +G R E+PQ F+MR+AMGL+
Sbjct: 258 DSELALFDLDRLGKALKPELDFEFTYLGLQTLYDRYFIHHDGTRFELPQAFYMRVAMGLA 317
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GI+ +I++
Sbjct: 318 INEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLSGIYGAIRD 377
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT+VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 378 NALLSKFAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 437
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEF+++RKNTGDDRRRTHDMN A W+PDLFMKRV++++ WTLFSP +V D
Sbjct: 438 AYLETWHIDVEEFLDMRKNTGDDRRRTHDMNTANWIPDLFMKRVVEEAQWTLFSPEEVED 497
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G FE++Y YE + G+I+ FK++ A+ LWRK+L MLFETGHPW+TFKD CNI
Sbjct: 498 LHDLTGLAFEKAYAEYEAKADRGEIRNFKRMPAVDLWRKMLGMLFETGHPWVTFKDPCNI 557
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
RSPQQHVG++HSSNLCTEITLNTS EI VCNLGS+NL H+ +NGKLD KL+KTIR A
Sbjct: 558 RSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVKHVDENGKLDKEKLQKTIRTA 617
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVI+ NYY+V +A++SNL HRPVGLGIMGFQD L+ +++PY+S+EA+KFAD SME
Sbjct: 618 MRMLDNVIEYNYYSVPQARHSNLLHRPVGLGIMGFQDALYKLRVPYASEEAVKFADDSME 677
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AS++LA E+G+Y SYDGSLW +GILP DS+KLL++ RG +YL+ + S++++W
Sbjct: 678 AVSYYAIEASSDLAAERGKYQSYDGSLWSKGILPIDSIKLLQEARG-EYLQQDDSKTMDW 736
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR++IK+ GMRNSN +AIAPTATISNI GVS SIEPTY+N+ +KSNLSGEFT IN Y+
Sbjct: 737 DMLRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNIFVKSNLSGEFTVINPYM 796
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK +GLWDE MI +LKY+DG+L I R+PD+L+ +Y TAFE+ W+IEA S RQKW
Sbjct: 797 VGDLKDRGLWDEVMINDLKYYDGSLQSIDRVPDELKSLYTTAFEMDARWLIEAASRRQKW 856
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
+DQ+QSLN+Y++ SGKK+D YKLAW+RGLKTTYYLRS+ A +K+ + N
Sbjct: 857 LDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGATGQEKTAA-----TPNST 911
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDV--------NECESCQ 749
L+ + + I+ E D +CE+CQ
Sbjct: 912 SAPKPAAPPTLKPVGKTEDDFISGEGQDAPKACSILEPDCEACQ 955
>gi|398904201|ref|ZP_10652125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM50]
gi|398176143|gb|EJM63873.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM50]
Length = 964
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/757 (62%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLNFLGVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E N+E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHITNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|431804028|ref|YP_007230931.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida HB3267]
gi|430794793|gb|AGA74988.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida HB3267]
Length = 959
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/757 (61%), Positives = 587/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KG++ +LL+
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVAESATHHEMADLYAKALPAYVEKGVEFELLD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L ++L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALKGYDLERLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+YA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG+KY+ VN+ ESL+W
Sbjct: 693 SFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVNLEESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|410093863|ref|ZP_11290328.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
viridiflava UASWS0038]
gi|409758711|gb|EKN43984.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
viridiflava UASWS0038]
Length = 970
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLSFLQVAESATHHEMADLYAKALPAYVAAGIKYELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ ESL+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKESLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|339488928|ref|YP_004703456.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida S16]
gi|338839771|gb|AEJ14576.1| ribonucleotide-diphosphate reductase, alpha subunit [Pseudomonas
putida S16]
Length = 959
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/757 (61%), Positives = 587/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KG++ +LL+
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLNVAESATHHEMADLYAKALPAYVEKGVEFELLD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L ++L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALKGYDLERLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+YA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG+KY+ VN+ ESL+W
Sbjct: 693 SFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVNLEESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|422637423|ref|ZP_16700855.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae Cit 7]
gi|330949819|gb|EGH50079.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae Cit 7]
Length = 970
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|398979216|ref|ZP_10688271.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM25]
gi|398135879|gb|EJM24981.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM25]
Length = 964
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+TI +A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLKRTIDVAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN RHRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +G+LP DS ++L + RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGSYETFQGSLWSKGVLPLDSQQILIEARGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|422596442|ref|ZP_16670724.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|298157495|gb|EFH98576.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330986741|gb|EGH84844.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 970
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|70731822|ref|YP_261564.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
protegens Pf-5]
gi|68346121|gb|AAY93727.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
protegens Pf-5]
Length = 963
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/756 (62%), Positives = 590/756 (78%), Gaps = 12/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-KEIKQIDIPIKYKEYFSK----FINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G E+ + + E ++K ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLEVAESATHHEMAELYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKLFKTVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ I Y S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
S G + + + + ++E CE+CQ
Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|398969934|ref|ZP_10683131.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM30]
gi|398141214|gb|EJM30144.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM30]
Length = 964
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 590/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLEVAESATHHEMADLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN RHRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y +++GSLW +GILP DS ++L ++RG KY+ V+++E+L+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFNGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|416017949|ref|ZP_11564986.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. glycinea str. B076]
gi|416028630|ref|ZP_11571575.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422404187|ref|ZP_16481241.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. glycinea str. race 4]
gi|320323422|gb|EFW79510.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. glycinea str. B076]
gi|320327619|gb|EFW83631.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330876274|gb|EGH10423.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 970
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|398839703|ref|ZP_10596948.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM102]
gi|398112333|gb|EJM02196.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM102]
Length = 964
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/757 (62%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLNFLGVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E N+E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE ++ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHITNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|71734708|ref|YP_275880.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|71555261|gb|AAZ34472.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 970
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|398910724|ref|ZP_10655187.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM49]
gi|398959036|ref|ZP_10677902.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM33]
gi|398145745|gb|EJM34522.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM33]
gi|398185315|gb|EJM72724.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM49]
Length = 963
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMVDLYAKALPAYIAKGIEYELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PELASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKDREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 692 VSYYAIQASCDLADERGSYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + ++E CE+CQ
Sbjct: 927 VSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|423094017|ref|ZP_17081813.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens Q2-87]
gi|397885156|gb|EJL01639.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens Q2-87]
Length = 963
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/756 (61%), Positives = 587/756 (77%), Gaps = 12/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMVDLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHITDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +G+LP DS ++L +RG KY+ V+++ESL+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGVLPLDSQQILIAQRGQKYIDVDLNESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
S G + + + + ++E CE+CQ
Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|395651267|ref|ZP_10439117.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 963
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/759 (62%), Positives = 587/759 (77%), Gaps = 18/759 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEYELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD +KL +T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTVKLARTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L +RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIAQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSV 710
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSG 931
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + S+ K C I D +CE+CQ
Sbjct: 932 NHGDDSV--LAAPAGPAPVPKACAI-----DEPDCEACQ 963
>gi|424924397|ref|ZP_18347758.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens R124]
gi|404305557|gb|EJZ59519.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens R124]
Length = 964
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/757 (61%), Positives = 590/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMAELYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN RHRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y +++GSLW +GILP DS ++L ++RG KY+ V+++E+L+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFNGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|104780528|ref|YP_607026.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
entomophila L48]
gi|95109515|emb|CAK14216.1| ribonucleoside diphosphate reductase, alpha subunit [Pseudomonas
entomophila L48]
Length = 958
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/757 (61%), Positives = 586/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KG++ +LL+
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLNVADSATHHEMADLYAKALPAYVEKGVEFELLD 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L ++L + A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 272 PALKGYDLERMGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 512 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 571
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 572 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 631
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 632 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 691
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 692 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLTESLDWAP 751
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 752 VRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 810
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 811 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 870
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 871 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 926
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 927 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 958
>gi|302184854|ref|ZP_07261527.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. syringae 642]
Length = 970
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMAELYAKALPAYVTAGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|421502702|ref|ZP_15949655.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
mendocina DLHK]
gi|400346686|gb|EJO95043.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
mendocina DLHK]
Length = 969
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/712 (64%), Positives = 572/712 (80%), Gaps = 7/712 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM I+ E ++ Y + ++ KG++ +LL+
Sbjct: 213 VEREPNYSYVTARLLMDNIRAEALTFLSIAGSATHHEMADLYAKALPAYVEKGVEFELLD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKL E++L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PKLKEYDLEKLGRAIEHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 332
Query: 116 NES-NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
E NRE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +
Sbjct: 333 EEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYSAIHD 392
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 393 NAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 452
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 453 AYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSEVPD 512
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ GK FEE Y YE + GKIKL+K I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 LHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD KL +T++ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIVDGKLDIEKLGRTVKTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLG+MGFQD L++ I Y S AI+FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQARNSNFKHRPVGLGLMGFQDALYLQHIAYGSDAAIEFADRSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS +LAEE+G YS+++GSLW +GILP DS ++L + RG KY+ V++SESL+W
Sbjct: 693 ISYYAIQASCDLAEERGSYSTFEGSLWSKGILPLDSQQILIEARGQKYIDVDLSESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R+KK G+RNSN +AIAPTATISNIIGVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PIRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 923
>gi|426411031|ref|YP_007031130.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
UW4]
gi|426269248|gb|AFY21325.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
UW4]
Length = 963
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 588/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMVDLYAKALPAYIAKGIEYELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PELASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKDREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A+ FAD+SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVDFADKSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 692 VSYYAIQASCDLADERGSYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + ++E CE+CQ
Sbjct: 927 VSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|388543424|ref|ZP_10146715.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
M47T1]
gi|388278736|gb|EIK98307.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
M47T1]
Length = 959
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 585/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ KGI +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLEVADSATHHEMADLYAKALPAYVAKGIQYELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAE++L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLAEYDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPNEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLERTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ I Y S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 693 SYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNESLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVDTKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 928 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 959
>gi|398929713|ref|ZP_10664117.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM48]
gi|398166442|gb|EJM54537.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM48]
Length = 964
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMVDLYAKALPAYIAKGIEYELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PELASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKEREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 693 VSYYAIQASCDLADERGSYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|66046946|ref|YP_236787.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. syringae B728a]
gi|63257653|gb|AAY38749.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
syringae B728a]
Length = 970
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVTAGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEHYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|407975878|ref|ZP_11156781.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratireductor
indicus C115]
gi|407428739|gb|EKF41420.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratireductor
indicus C115]
Length = 965
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/758 (59%), Positives = 592/758 (78%), Gaps = 18/758 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF------GKEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P Y++V+ARLL+ ++ E ++ Q ++ Y +YF ++ GI+ +L+
Sbjct: 217 IETEPGYAKVSARLLLDKLRSEALTFVKGSAQQATQAEMAALYADYFRAYLKAGIEAELI 276
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L F++ + AL+PERDLQF+YLGL+ LYDRYFLH +R E+PQ FFMR+AMGL+
Sbjct: 277 DPELGRFDIERIVAALMPERDLQFDYLGLQTLYDRYFLHRHNVRFELPQAFFMRVAMGLA 336
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FY LLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+++K+
Sbjct: 337 IREIDREGRAIEFYRLLSSFDFMTSTPTLFNSGTLRPQLSSCFLTTVSDDLDGIFKAVKD 396
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDW++VR LG+ IKGTNG+SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 397 NALLAKYSGGLGNDWSRVRGLGAHIKGTNGQSQGVVPFLKVANDTAIAVNQGGKRKGAVC 456
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV TWTLFSP + PD
Sbjct: 457 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMERVEADGTWTLFSPDEAPD 516
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F E+Y YE + + G++K++K++ A+ LWR++L+MLFETGHPWITFKD CNI
Sbjct: 517 LHDLYGIPFREAYEAYEAKAERGEMKVYKQLRAVDLWRRMLTMLFETGHPWITFKDPCNI 576
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQ HVG++HSSNLCTEITLNTS +E+ VCNLGS+NL H+ LD +L +T++ AM
Sbjct: 577 RSPQGHVGVVHSSNLCTEITLNTSADEVAVCNLGSVNLAAHVSADGLDHERLARTVKTAM 636
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNV+DIN+Y + +A+ SNLRHRPVGLG+MGFQD L +IPY+S+EA+ FAD+SME
Sbjct: 637 RMLDNVVDINFYTIPEARRSNLRHRPVGLGLMGFQDALQTRRIPYASQEAVAFADESMEA 696
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y+A AS ELA E+GRY +++GSLW QG+LP DS+ L + R S + ++ +E+L+W+
Sbjct: 697 LSYHAISASVELAAERGRYQTFEGSLWSQGVLPVDSIARLSEARPS--VTMDNAETLDWE 754
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ GMRNSNC+AIAPTATISNI GVS SIEP+Y+NL +KSN+SG+FT +N LV
Sbjct: 755 SLRERVRSTGMRNSNCMAIAPTATISNICGVSQSIEPSYQNLFVKSNMSGDFTVVNAALV 814
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE M+A+LKY+DG++ QI RIPDDL+ +YATAFEI P W+IEA S RQKWI
Sbjct: 815 RDLKARGLWDEVMVADLKYYDGSVGQIDRIPDDLKALYATAFEIEPIWLIEAASRRQKWI 874
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y+SN SG+KLDETY+LAW GLKTTYYLRS SA + +KS + G+D L+
Sbjct: 875 DQAQSLNLYVSNPSGRKLDETYRLAWKFGLKTTYYLRSRSATHVEKSTLK-GVDG-KLNA 932
Query: 715 ISIKGYNKNLQEIKN---NKKCLINSEINDVNECESCQ 749
+S + + K C I D +CE+CQ
Sbjct: 933 VSASSVAVPVSAPASEGWGKACAI-----DDPDCEACQ 965
>gi|289648391|ref|ZP_06479734.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. aesculi str. 2250]
Length = 970
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/769 (61%), Positives = 586/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|374705839|ref|ZP_09712709.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
S9]
Length = 969
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/759 (61%), Positives = 586/759 (77%), Gaps = 11/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P Y+ VTARLLM I+ E ++ Y + +I KGI+ LL+
Sbjct: 212 VEREPNYTYVTARLLMDNIRAEGLSFLEVATSATHHEMADLYAKALPAYIAKGIEFDLLD 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKL +F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 272 PKLQDFDLEKLGKAINHERDGQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAM 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEQQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VRSLG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRSLGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + GKIKL K I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 512 HDLTGKAFEERYEYYEALIEYGKIKLHKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 571
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL+KT+ A+R
Sbjct: 572 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQKTVNTAVR 631
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 632 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 691
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++DGSLW +GILP DS ++L ++RG KY+ V+++E+L+W
Sbjct: 692 SYYAIQASCDLADERGSYETFDGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWAP 751
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 752 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 810
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 811 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKWID 870
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 871 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTGKLNAVSSGG 930
Query: 712 LDEISIKGYNKNLQ-EIKNNKKCLINSEINDVNECESCQ 749
D +S Q E+ + + D +CE+CQ
Sbjct: 931 NDGLSAAPGKAAPQVEMAAGPAPVPKACAIDEPDCEACQ 969
>gi|421141195|ref|ZP_15601183.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fluorescens BBc6R8]
gi|404507595|gb|EKA21577.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fluorescens BBc6R8]
Length = 965
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLKVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 928
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 929 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 965
>gi|395494496|ref|ZP_10426075.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
PAMC 25886]
Length = 965
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 588/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLKVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 928
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 929 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 965
>gi|289628679|ref|ZP_06461633.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|422581174|ref|ZP_16656317.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330866024|gb|EGH00733.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 970
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/769 (61%), Positives = 586/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|398859181|ref|ZP_10614861.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM79]
gi|398237322|gb|EJN23075.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM79]
Length = 964
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 589/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLNFLGVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E N+E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE ++ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALSEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHITNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++E+L+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|257485934|ref|ZP_05639975.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|422680997|ref|ZP_16739268.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|331010342|gb|EGH90398.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 970
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|192361574|ref|YP_001982049.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio
japonicus Ueda107]
gi|190687739|gb|ACE85417.1| ribonucleoside reductase, large chain [Cellvibrio japonicus
Ueda107]
Length = 978
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/725 (62%), Positives = 571/725 (78%), Gaps = 10/725 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P Y+ TARLL+ ++ E G Q D+ + Y +I KG++ +L++
Sbjct: 214 VEKEPNYTYATARLLLDKLRAEALGFLGVAPSATQSDMELYYARALPVYIQKGVELELIS 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L F+L L AL+ +RDLQF YLGL+ LYDRYF+H + RIE+PQ FFMR+AMGL+L
Sbjct: 274 PELLNFDLDKLGKALIADRDLQFTYLGLQTLYDRYFIHSDSTRIELPQIFFMRVAMGLAL 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE+ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 334 QEDKREERAIEFYRLLSSFDYMSSTPTLFNSGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMD+EEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLFSP DVPDL
Sbjct: 454 YLETWHMDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEDQEWTLFSPNDVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE GK++LFK + AL LWRK+L MLFETGHPWITFKD CN+R
Sbjct: 514 HDLYGKAFEERYEHYEQLAAQGKVRLFKTVRALDLWRKMLGMLFETGHPWITFKDPCNLR 573
Query: 356 SPQQHVGIIHSSNLCTEITLNT-SKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQH G++HSSNLCTEITLNT + +EI VCNLGS+NL H+ NGKLD KL+KT+ A+
Sbjct: 574 SPQQHAGVVHSSNLCTEITLNTKAGDEIAVCNLGSVNLAQHIVNGKLDLAKLEKTVSTAI 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYYAV +K SNLRHRP+GLGIMGFQD L+ +I YSS+ A+ FAD SME
Sbjct: 634 RMLDNVIDINYYAVDTSKQSNLRHRPIGLGIMGFQDALYEQRIAYSSQAAVDFADTSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G+YS+++GSLW +G+LP DS+ +L + RG Y+KV+ S++ +W
Sbjct: 694 VSYYAIKASCQLAQERGKYSTFEGSLWSKGVLPIDSIDILAQNRGENYIKVDRSKTFDWD 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +K GMRNSN +AIAPTATISNI GV+ SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 754 SLRTEVKTKGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGEFTVVNPYLV 813
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWD M+ +LKY++G++ +I RIP+D++ IYATAFE+ P WI+E+ S RQKWI
Sbjct: 814 HDLKDRGLWDSVMVNDLKYYEGSVQKIDRIPEDMKAIYATAFEVEPKWIVESASRRQKWI 873
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ +GKKLD TY++AW GLKTTYYLR+++A +KS G L+
Sbjct: 874 DQAQSLNLYIAGANGKKLDITYRMAWYSGLKTTYYLRALAATTTEKSTINTGA----LNA 929
Query: 715 ISIKG 719
+S G
Sbjct: 930 VSATG 934
>gi|398854931|ref|ZP_10611441.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM80]
gi|398233190|gb|EJN19130.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM80]
Length = 964
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 590/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMADLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK++LFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVRLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS I + L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKST----ISTSKLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|440745082|ref|ZP_20924380.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae BRIP39023]
gi|440373162|gb|ELQ09930.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae BRIP39023]
Length = 970
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/769 (61%), Positives = 587/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|387895169|ref|YP_006325466.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
fluorescens A506]
gi|423693122|ref|ZP_17667642.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens SS101]
gi|387163405|gb|AFJ58604.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens A506]
gi|388002702|gb|EIK64031.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fluorescens SS101]
Length = 964
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/759 (62%), Positives = 587/759 (77%), Gaps = 18/759 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLKVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E N+E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD +KL +T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTVKLARTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSV 710
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSG 932
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + S+ K C I D +CE+CQ
Sbjct: 933 NHGDDSV--LAAPAGPAPVPKACAI-----DEPDCEACQ 964
>gi|333899976|ref|YP_004473849.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
fulva 12-X]
gi|333115241|gb|AEF21755.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
fulva 12-X]
Length = 969
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/759 (61%), Positives = 585/759 (77%), Gaps = 11/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM I+ E ++ Y + ++ G +LL+
Sbjct: 212 VEREPNYSYVTARLLMDNIRAEALSFLNIAASATHHEMAELYAKALPAYVEAGAQFELLD 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKL E++L L AL ERD QF YLGL+ L+DRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PKLKEYDLEKLGKALNHERDQQFTYLGLQTLFDRYFIHKDGVRFELPQVFFMRVAMGLAI 331
Query: 116 NES-NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
E NRE+ AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +
Sbjct: 332 EEPKNREERAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHD 391
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 392 NAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 451
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 452 AYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSEVPD 511
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ GK FEE Y YE + GKIKL+K I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 LHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSIN+ H+ +GKLD KL +T++ A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINMVNHIVDGKLDTAKLGRTVKTAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNL+HRPVGLG+MGFQD L++ IPY S A++FAD+SME
Sbjct: 632 RMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQHIPYGSDAAVEFADRSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS +LA+E+G Y ++DGSLW +GILP DS ++L + RG+KY+ VN+ E+L+W
Sbjct: 692 ISYYAIQASCDLADERGAYETFDGSLWSKGILPLDSQQILIEARGAKYIDVNLDETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R+KK G+RNSN +AIAPTATISNIIGVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRERVKK-GVRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSV 710
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSG 930
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S + + + D +CE+CQ
Sbjct: 931 GDQGLSAAPAAAPATQASPGPAPVPKACAIDEPDCEACQ 969
>gi|406940863|gb|EKD73510.1| hypothetical protein ACD_45C00296G0010 [uncultured bacterium]
Length = 945
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/754 (61%), Positives = 587/754 (77%), Gaps = 22/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG----KEIKQID-IPIKYKEYFSKFINKGIDNKLLN 55
+EK+P YS V ARLL+ ++ E K+ D + Y Y + ++ +G++ +LL+
Sbjct: 209 IEKEPNYSFVAARLLLDNLRSEALQFLNIKDRATFDEMKTLYYSYLTAYVERGVELELLD 268
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
+L ++L L++A+ PERDLQF YLGL+ LYDRYF+H GIR E+PQ FFMR+AMGL+L
Sbjct: 269 AQLKTYDLKKLASAIQPERDLQFTYLGLQTLYDRYFIHSYGIRFELPQVFFMRVAMGLAL 328
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE N+E+ AI+FYNLLS+F+FM STPTLFNSGT+R QLSSCYL+TVPDDL GIF +IK+N
Sbjct: 329 NEPNKEQRAIEFYNLLSTFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFAAIKDN 388
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSKYAGGLGNDWT VR++G+ IKGTNG+S GV+PFL V N AVAVNQGGKRKGA+C
Sbjct: 389 ALLSKYAGGLGNDWTNVRAMGARIKGTNGKSLGVVPFLSVANATAVAVNQGGKRKGAVCG 448
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV+ + WTLFSP DVPDL
Sbjct: 449 YLETWHKDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLDEGEWTLFSPDDVPDL 508
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE++Y YE + G+IK FKK+ A+ LWRK+L MLFETGHPW+TFKDACN+R
Sbjct: 509 HDLYGEAFEKTYTAYEAKAARGEIKNFKKLPAMTLWRKMLGMLFETGHPWMTFKDACNLR 568
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNTS +EI VCNLGSINLT HM + LD KL++TI A+R
Sbjct: 569 SPQQHVGVVHSSNLCTEITLNTSLDEIAVCNLGSINLTTHMTDKGLDQEKLRRTIHTAIR 628
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN++HRP+GLGIM FQD L+ + IPY++ EA++FAD+SME+I
Sbjct: 629 MLDNVIDINYYSVPQARNSNMKHRPIGLGIMAFQDALYKLGIPYAADEAVEFADRSMELI 688
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AST LAEE+G+YS++D SLW QGILP DS++LL K+R N S++L+W+
Sbjct: 689 SYYAIEASTFLAEERGQYSTFDESLWSQGILPIDSVELLAKQRAGYLFNQNRSQTLDWET 748
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R+KK GMRNSN +AIAPTATI+NI GVS SIEPTY+NL +KSNLSGEFT IN YLV
Sbjct: 749 LRKRVKKVGMRNSNVLAIAPTATIANITGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVT 808
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LKK LWD+ MI +LKY+ G++++ISRIPD L+++YATAFE+ P W++EA S RQKWID
Sbjct: 809 DLKKLSLWDDVMINDLKYYHGSVTKISRIPDHLKQLYATAFEMDPAWLVEAASRRQKWID 868
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+Y++ SGKKLD Y+LAW+ GLKTTYYLRS+ A A++S + DS
Sbjct: 869 QAQSLNLYMAQPSGKKLDNLYRLAWVLGLKTTYYLRSMGATNAERSTVQ---DS------ 919
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + K CLI CE+CQ
Sbjct: 920 ---ALNAVQTTAEEPKACLITDPT-----CEACQ 945
>gi|398889248|ref|ZP_10643124.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM55]
gi|398189692|gb|EJM76959.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM55]
Length = 964
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 588/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKAREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYDTFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|422676691|ref|ZP_16736014.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. aceris str. M302273]
gi|330974388|gb|EGH74454.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. aceris str. M302273]
Length = 953
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/729 (63%), Positives = 576/729 (79%), Gaps = 11/729 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVAAGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKN 723
+S G+ +
Sbjct: 927 VSSGGHGPD 935
>gi|399005090|ref|ZP_10707688.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM17]
gi|398127520|gb|EJM16928.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM17]
Length = 963
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/756 (61%), Positives = 586/756 (77%), Gaps = 12/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A+ FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVDFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+YA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 693 SFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIESRGQKYIDVDLNETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
S G + + + + ++E CE+CQ
Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|414163223|ref|ZP_11419470.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia felis
ATCC 53690]
gi|410881003|gb|EKS28843.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia felis
ATCC 53690]
Length = 966
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/764 (59%), Positives = 586/764 (76%), Gaps = 24/764 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P Y+ V+ARLL+ ++ EV Q D+ +Y EYF +I GI+++LL
Sbjct: 212 VEQEPNYAYVSARLLLDKLRSEVLSFVHGTPSNASQSDMATRYAEYFPAYIKTGIESELL 271
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L F+L+ L+ AL PERDLQF +LGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+
Sbjct: 272 DPELGRFDLARLAAALKPERDLQFQFLGLQTLYDRYFLHVHGARIELPQAFFMRVAMGLA 331
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+++K+
Sbjct: 332 VREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADDLDGIFKAVKD 391
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 392 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 451
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV WTLFSP + PD
Sbjct: 452 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEADGEWTLFSPNETPD 511
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F+ +Y YE + G+I++FK++ A LWR++L+MLFETGHPWITFKD CN+
Sbjct: 512 LHDLYGPAFKTAYEGYEAKAARGEIRVFKQVRATDLWRRMLTMLFETGHPWITFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS +E+ VCNLGSINL H LD KL++TI A+
Sbjct: 572 RSPQQHTGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREGLDRDKLQRTITTAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNL+HRPVG+G+MGFQD LH+ +IP +S A+ FAD+SME+
Sbjct: 632 RMLDNVIDINFYTIPEARRSNLKHRPVGMGLMGFQDALHVQRIPIASDAAVAFADESMEI 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS +LA E+GRY S+DGSLW QGILP DS+ +L K R L N S +L+W
Sbjct: 692 ISYHAISASVDLAVERGRYPSFDGSLWSQGILPIDSVAILSKARDGAPL--NASATLDWS 749
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++K GMRNSN +AIAPTATISNI GV+ SIEP+Y+NL +KSN+SG+FT +N +LV
Sbjct: 750 SLRERVRKDGMRNSNVMAIAPTATISNICGVAQSIEPSYQNLFVKSNMSGDFTVVNEHLV 809
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWDE M+++LKYFDG++ QI R+PDDL+ +YATAFEI +W+IE+ + RQKWI
Sbjct: 810 HDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDTSWLIESAARRQKWI 869
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N SGKKLD+ Y+LAW GLKTTYYLRS SA + +KS + G D L+
Sbjct: 870 DQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKSTLK-GTDG-KLNA 927
Query: 715 ISIKGY---------NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S G N ++ C I D +CE+CQ
Sbjct: 928 VSASGMLAHAPIIIPNATAPDLDGVHACSI-----DNPDCEACQ 966
>gi|388466455|ref|ZP_10140665.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
synxantha BG33R]
gi|388010035|gb|EIK71222.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
synxantha BG33R]
Length = 964
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/759 (62%), Positives = 587/759 (77%), Gaps = 18/759 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLKVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E N+E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSV 710
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSG 932
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + S+ K C I D +CE+CQ
Sbjct: 933 NHGDDSV--LAAPAGPAPVPKACAI-----DEPDCEACQ 964
>gi|398938075|ref|ZP_10667564.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM41(2012)]
gi|398166268|gb|EJM54369.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM41(2012)]
Length = 964
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/757 (62%), Positives = 588/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E N+E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKNKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE ++ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALSEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHITNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|429332140|ref|ZP_19212872.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida CSV86]
gi|428763190|gb|EKX85373.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida CSV86]
Length = 967
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/711 (63%), Positives = 571/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEALGFLEVAESATHHEMADLYAKALPAYIAKGVEYELLD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L + A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 273 PALASFDLERIGQAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 GEKDREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPDL
Sbjct: 453 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDHAKLQRTVHTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRPVGLGIMGFQD L++ I Y S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADRSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG+KY+ VN+ E+L+W
Sbjct: 693 SYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVNLDETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTITTG 922
>gi|241589541|ref|YP_002979566.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
pickettii 12D]
gi|240868253|gb|ACS65912.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
pickettii 12D]
Length = 949
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/758 (60%), Positives = 598/758 (78%), Gaps = 9/758 (1%)
Query: 1 MEKDPVYSQVTARLLMYC-IQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
+E +P Y++ ARL++ + +VFGK I ++ Y E F++ I + + +LL +
Sbjct: 192 IEMEPAYTKAAARLVLALQLGHDVFGKAITFDELASSYGEAFARGIKEAVSAELLADDMT 251
Query: 60 E-FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L L+NA+ PERD ++YLG++ LYDRY LHI+G RIE+PQ F MR+AMGL+ NE
Sbjct: 252 RGFDLQRLANAIRPERDCLWDYLGMQTLYDRYLLHIDGKRIELPQAFLMRVAMGLARNEV 311
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
RE AI+FY +LS+F++M STPTLFN+G++RSQLSSCYL+T+ DDL GI++ +KENALL
Sbjct: 312 EREVRAIEFYEVLSTFDYMASTPTLFNTGSLRSQLSSCYLTTISDDLEGIYDGLKENALL 371
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT+VR+LGS IKGTNG+SQG++PFLKVVND AVAVNQGGKRKGA+CAYLE
Sbjct: 372 SKFAGGLGNDWTRVRALGSYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGAVCAYLE 431
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + + WTLFSP DVPDLH+
Sbjct: 432 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHEGADWTLFSPNDVPDLHDL 491
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G +FEE Y YE G +K FK+ A+ LWRK+L +LFETGHPWITFKD CNIRSPQ
Sbjct: 492 YGSKFEERYKHYEALADAGTLKHFKRAPAVDLWRKMLGLLFETGHPWITFKDPCNIRSPQ 551
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---KNGK--LDPIKLKKTIRIA 413
QHVG++HSSNLCTEITLNT+ +EI VCNLGS+NL H+ +G LD +KL++TIRIA
Sbjct: 552 QHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSVALDHVKLRRTIRIA 611
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVID+N+YAV KA+ SN+RHRPVGLG+MG+QD L+++ IP+ S+ A++F+D+SME
Sbjct: 612 MRMLDNVIDMNFYAVSKARTSNMRHRPVGLGMMGYQDALYVLGIPFGSEAAVEFSDRSME 671
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
ICYYAY AS++LA E+G Y SY+GSLW +GILP DS+ LL +ERG YL V+ S S++W
Sbjct: 672 AICYYAYEASSDLAVERGVYPSYNGSLWSKGILPFDSIDLLVQERGEGYLDVDRSSSMDW 731
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR +I + GMRNSNCVAIAPTATISNI+GVSAS EP ++NL++KSNLSGEFT +N YL
Sbjct: 732 DALREKIGRQGMRNSNCVAIAPTATISNIVGVSASNEPQFQNLYVKSNLSGEFTLVNEYL 791
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LKK G+WDE M+++LK++DG++ +I R+P D++ YATAFEI P+W +EAG+ RQKW
Sbjct: 792 VADLKKLGIWDEVMLSDLKFYDGSVQKIDRVPADIKARYATAFEIEPSWSVEAGARRQKW 851
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNL 712
IDQ+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+I+A +KS +G +++V
Sbjct: 852 IDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTIAATSVEKSTVPLGTLNAVAP 911
Query: 713 -DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+++ + ++ + + C+ D C++CQ
Sbjct: 912 SSQMATQQTTQSSEPDVEGRVCMFRPGDPDFEGCQACQ 949
>gi|395796892|ref|ZP_10476185.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
Ag1]
gi|395338883|gb|EJF70731.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
Ag1]
Length = 965
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 588/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLKVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 928
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 929 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 965
>gi|307546479|ref|YP_003898958.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
elongata DSM 2581]
gi|307218503|emb|CBV43773.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
elongata DSM 2581]
Length = 968
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/721 (63%), Positives = 571/721 (79%), Gaps = 9/721 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EKDP Y+ VTARLL +++E +E ++ YK F +I KGI+ + L+
Sbjct: 199 VEKDPNYTYVTARLLQDNLRREALSFLGIAEEATYQEMADYYKPAFQAYIAKGIEFEQLD 258
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LAEF+L L +AL RD QF YLGL+ LYDRYF+H + +R E+PQ FMR+AMGL+L
Sbjct: 259 PRLAEFDLERLGDALDHTRDAQFTYLGLQTLYDRYFIHRDEVRYELPQVMFMRVAMGLAL 318
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE +RE AI+FY LLSSF++M STPTLFNSGT+RSQLSSCYL+TVPDDL I+ +I++N
Sbjct: 319 NEDDREARAIEFYELLSSFDYMASTPTLFNSGTVRSQLSSCYLTTVPDDLDNIYSAIRDN 378
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 379 ALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 438
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV WTLFSP PDL
Sbjct: 439 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDGEWTLFSPATCPDL 498
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G FE+ Y YE T+ G++KLFK++ A LWR++LSMLFETGHPWITFKD CN+R
Sbjct: 499 HDLYGAAFEKRYQEYEEMTRNGQLKLFKRVRAKDLWRRMLSMLFETGHPWITFKDPCNLR 558
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS +EI VCNLGSINL H+ +G+ D KLKKT++ A+R
Sbjct: 559 SPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSINLAQHVTDGQFDGDKLKKTVKTAVR 618
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV +A+ SN +HRPVGLGIMGFQD L+ I Y+S EA+ FAD SME++
Sbjct: 619 MLDNVIDINYYAVPQAERSNFKHRPVGLGIMGFQDALYAQDIAYASDEAVAFADTSMELV 678
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS++LA E+G Y SY+GSLW QGILP DS++ L++ERG KY++V+ S + +W +
Sbjct: 679 SYHAIEASSDLAAERGHYESYEGSLWSQGILPIDSIEKLKQERGEKYIEVDTSTTQDWDR 738
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R +I GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT +N Y+V
Sbjct: 739 IREKIAVQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVVNAYMVN 798
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWDE MI +LKY+DG++ I R+P+DL+ YATAFE P W++EA + RQKWID
Sbjct: 799 DLKERGLWDEVMINDLKYYDGSVQAIDRVPEDLKAKYATAFETEPKWLVEAAARRQKWID 858
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI SGKKLD TY++AW RGLKTTYYLR++ A +KS + G NL+ +
Sbjct: 859 QAQSLNLYIQGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEKSTVDRG----NLNAV 914
Query: 716 S 716
S
Sbjct: 915 S 915
>gi|399001062|ref|ZP_10703781.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM18]
gi|398128519|gb|EJM17906.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM18]
Length = 964
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/760 (61%), Positives = 591/760 (77%), Gaps = 19/760 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG--------KEIKQIDIPIKYKEYFSKFINKGIDNK 52
+E++P YS VTARLLM ++ E G + +D+ Y + +I KGI+ +
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMVDL---YAKALPAYIAKGIEFE 269
Query: 53 LLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
LLNP LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMG
Sbjct: 270 LLNPVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMG 329
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L++ E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I
Sbjct: 330 LAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAI 389
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+NA+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA
Sbjct: 390 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 449
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
+CAYLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +V
Sbjct: 450 VCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEV 509
Query: 293 PDLHNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
PDLH+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD
Sbjct: 510 PDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDP 569
Query: 352 CNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
CN+RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+
Sbjct: 570 CNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVN 629
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+S
Sbjct: 630 TAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKS 689
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
ME + YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++E+L
Sbjct: 690 MEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETL 749
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W +R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQ
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
KWIDQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----K 924
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
L+ +S G + + + + ++E CE+CQ
Sbjct: 925 LNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|119713587|gb|ABL97638.1| ribonucleotide-diphosphate reductase alpha subunit [uncultured
marine bacterium EB0_39H12]
Length = 955
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/754 (61%), Positives = 594/754 (78%), Gaps = 12/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P Y+ VTAR+L+ I+ E K+ Q ++ + Y + F+ KG++N++LN
Sbjct: 209 VEQEPNYTYVTARILLDNIRTEALTYLELQKQATQQEMKVLYPQALRSFLAKGVENEILN 268
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L E ++ L A+ RD+ F YLGL+ LYDRYF+H IR E+PQ FFMR++MGL+L
Sbjct: 269 PELLEMDIEKLGKAIDSSRDMDFTYLGLQTLYDRYFIHDTEIRYELPQVFFMRVSMGLAL 328
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE+ AI+FYNLLSSF++M STPTLFNSGT SQLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 329 REEKREEKAIEFYNLLSSFDYMSSTPTLFNSGTKHSQLSSCYLTTVPDDLHGIYGAIQDN 388
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C+
Sbjct: 389 AMLSKWAGGLGNDWTPVRGLGSQIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCS 448
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLF+KRV + WTLF+P D PDL
Sbjct: 449 YLETWHVDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFLKRVSEDKKWTLFTPSDTPDL 508
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G EFE+ Y YE QTK G+I+ FK++ A LW+K+LSM+FETGHPWITFKD CN+R
Sbjct: 509 HDLYGLEFEKRYEEYETQTKTGEIEFFKEVEAKDLWKKMLSMVFETGHPWITFKDVCNLR 568
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS++EI VCNLGS+NLT H+K+GK+D KL+KTI A+R
Sbjct: 569 SPQQHTGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLTHHIKDGKMDEEKLEKTINTAIR 628
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDIN+YAVK A+ SN++HRP+GLGIMGF D L++++ PY+S+EA+ FAD+SMEM+
Sbjct: 629 MLDNVIDINFYAVKAAETSNMKHRPIGLGIMGFHDALYMLETPYASQEAVDFADKSMEMV 688
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS++LA+E+G Y SY+GSLW QGILP DS+KLL++ RG YL+++ S S++W
Sbjct: 689 SYYAIKASSDLAKERGAYQSYEGSLWSQGILPIDSIKLLKESRGEDYLEMDESSSMDWDG 748
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR ++ G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT N +V+
Sbjct: 749 LREIVRNQGIRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVTNIPMVE 808
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
LK+ GLWD MI +LKY+DG++ ISRIP++++++YATAF+I P W+I+A S RQKWID
Sbjct: 809 NLKRLGLWDSVMINDLKYYDGSVKGISRIPEEVKELYATAFDIEPRWLIDAASRRQKWID 868
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
QSQSLN+YI +GKKLD Y++AWLRGLKTTYYLRS SA A+KS G L+ +
Sbjct: 869 QSQSLNLYIDEPNGKKLDIMYRMAWLRGLKTTYYLRSRSATTAEKSTISTG----ELNAV 924
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + + +NN I D + C++CQ
Sbjct: 925 SATAQPE--VQPQNNTTAPSACSILDPD-CDACQ 955
>gi|422647074|ref|ZP_16710205.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|330960619|gb|EGH60879.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 970
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/769 (61%), Positives = 588/769 (76%), Gaps = 30/769 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNA 926
Query: 715 ISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 970
>gi|312962585|ref|ZP_07777075.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
gi|311283165|gb|EFQ61756.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
Length = 963
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/759 (62%), Positives = 587/759 (77%), Gaps = 18/759 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE + GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALAQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++E+L+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSV 710
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSG 931
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + S+ K C I D +CE+CQ
Sbjct: 932 NHGDDSV--LAAPAGPAPVPKACAI-----DEPDCEACQ 963
>gi|110833572|ref|YP_692431.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
borkumensis SK2]
gi|110646683|emb|CAL16159.1| ribonucleoside reductase [Alcanivorax borkumensis SK2]
Length = 962
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/755 (61%), Positives = 585/755 (77%), Gaps = 15/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P YSQVTARLLM I+ E + ++ Y + +I+KGI+ +LL+
Sbjct: 217 IEVEPNYSQVTARLLMDKIRAEALQFLRVAERASHDEMNALYSDALKAYISKGIELELLS 276
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LAE++L L AL RDLQF+YLGL+ LYDRYF+H RIE+PQ FFMR+AMGL+
Sbjct: 277 PQLAEYDLDALGAALDGNRDLQFSYLGLQTLYDRYFIHHNDTRIELPQCFFMRVAMGLAA 336
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 337 EEDNREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 396
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNGRSQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 397 AMLSKFAGGLGNDWTPVRALGAYIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 456
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRVI + WTLFSP D PDL
Sbjct: 457 YLETWHMDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVINEEDWTLFSPNDTPDL 516
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE++Y YE +T+ G++KLFK++ A+ LWRK+LSMLFETGHPW TFKD CN+R
Sbjct: 517 HDLYGEAFEKAYTEYEAKTRSGELKLFKRLPAINLWRKMLSMLFETGHPWFTFKDPCNLR 576
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT++ EI VCNLGS+NL H+ L+ KL+ TI A+R
Sbjct: 577 SPQQHVGVVHSSNLCTEITLNTNQEEIAVCNLGSVNLAQHVDENGLNIEKLQSTINTAVR 636
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN++HRPVGLGIMGFQD L+ I Y+S +A+ FAD SME +
Sbjct: 637 MLDNVIDINYYSVPQAKRSNMKHRPVGLGIMGFQDALYKQGISYASSDAVTFADTSMEAV 696
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LAEE+G Y ++DGSLW QGILP DS+ +L K+RG Y KV+ S++L+W
Sbjct: 697 SYYAIQASAKLAEERGAYQTFDGSLWSQGILPIDSIDILVKQRGEDYCKVDRSQTLDWDS 756
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R KK GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLVK
Sbjct: 757 VRAMAKK-GMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVK 815
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
LK++GLWD M+ +LKY+DG+ I RIP DL++ + TAFE+ P W++EA S RQKWID
Sbjct: 816 ALKERGLWDNVMVNDLKYYDGSAQPIERIPADLKEQFRTAFEVEPRWLVEAASRRQKWID 875
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLN+YI+ +GKKLD TYK+AWL GLKTTYYLR+I A +KS G ++ V+
Sbjct: 876 QAQSLNLYIAEANGKKLDVTYKMAWLLGLKTTYYLRAIGATQTEKSTISDGKLNQVSSGP 935
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ +N Q K C I D +CE+CQ
Sbjct: 936 ETPAEFN---QAADVPKACSI-----DEPDCEACQ 962
>gi|389682273|ref|ZP_10173616.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
chlororaphis O6]
gi|388554147|gb|EIM17397.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
chlororaphis O6]
Length = 963
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/756 (61%), Positives = 587/756 (77%), Gaps = 12/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+YA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 693 SFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
S G + + + + ++E CE+CQ
Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|419954854|ref|ZP_14470988.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri TS44]
gi|387968241|gb|EIK52532.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri TS44]
Length = 955
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/758 (62%), Positives = 590/758 (77%), Gaps = 20/758 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 209 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYIEKGVEFELLD 268
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H +R E+PQ FFMR+AMGL++
Sbjct: 269 SKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKNDVRFELPQIFFMRVAMGLAI 328
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+++I++N
Sbjct: 329 EEEQKEVRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDAIRDN 388
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 389 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 448
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 449 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSDVPDL 508
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 509 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 568
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+R A+R
Sbjct: 569 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDAAKLERTVRTAVR 628
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLG+MGFQD L++ I Y S AI FAD+SME I
Sbjct: 629 MLDNVIDINYYSVPQAQNANFKHRPVGLGLMGFQDALYLQHIAYGSDAAIDFADKSMEAI 688
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G YSS+DGSLW QGILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 689 SYYAIQASCDLADERGAYSSFDGSLWSQGILPLDSQQILIEARGQKYIDVDLTESLDWAP 748
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 749 IRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 807
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI+EA S RQKWID
Sbjct: 808 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDMYATAFEVETKWIVEAASRRQKWID 867
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + SV
Sbjct: 868 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSVI 927
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ +S + + + C I D +CE+CQ
Sbjct: 928 DESLSAEPKPAPVPQ-----ACSI-----DNPDCEACQ 955
>gi|440738426|ref|ZP_20917959.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fluorescens BRIP34879]
gi|447917930|ref|YP_007398498.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
poae RE*1-1-14]
gi|440381098|gb|ELQ17642.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fluorescens BRIP34879]
gi|445201793|gb|AGE27002.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
poae RE*1-1-14]
Length = 964
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/759 (62%), Positives = 588/759 (77%), Gaps = 18/759 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE ++ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSV 710
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSG 932
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + S+ K C I D +CE+CQ
Sbjct: 933 NHGDDSV--LAAPAGPAPVPKACAI-----DEPDCEACQ 964
>gi|386020287|ref|YP_005938311.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri DSM 4166]
gi|327480259|gb|AEA83569.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri DSM 4166]
Length = 960
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/711 (65%), Positives = 574/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 207 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYIEKGVEFELLD 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H + +R E+PQ FFMR+AMGL++
Sbjct: 267 SKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFELPQIFFMRVAMGLAI 326
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI++SI++N
Sbjct: 327 EEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDSIRDN 386
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 387 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 446
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 447 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSDVPDL 506
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 507 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 566
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+K+GKLD KL++T+R A+R
Sbjct: 567 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIKDGKLDAAKLERTVRTAVR 626
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 627 MLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 686
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G YSS++GSLW +GILP DS ++L + RG KY+ V++SESL+W
Sbjct: 687 SYYAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARGQKYIDVDLSESLDWAP 746
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 747 IRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 805
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 806 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQKWID 865
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 866 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 916
>gi|229592128|ref|YP_002874247.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fluorescens SBW25]
gi|229363994|emb|CAY51541.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
fluorescens SBW25]
Length = 964
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/759 (62%), Positives = 588/759 (77%), Gaps = 18/759 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE ++ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSV 710
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + S
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSG 932
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + S+ K C I D +CE+CQ
Sbjct: 933 NHGDDSV--LAAPAGPAPVPKACAI-----DEPDCEACQ 964
>gi|407363232|ref|ZP_11109764.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
mandelii JR-1]
Length = 964
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 587/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|402699198|ref|ZP_10847177.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fragi A22]
Length = 957
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/756 (61%), Positives = 588/756 (77%), Gaps = 13/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ LLN
Sbjct: 208 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMADLYAKALPAYIAKGIEFDLLN 267
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 268 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 327
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 328 EEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTQRPQLSSCYLTTVPDDLSGIYHAIHDN 387
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 388 AMLSKFAGGLGNDWTPVRALGSWIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 447
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 448 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 507
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE ++ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 508 HDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 567
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+K+GKLD KLK+TI +A+
Sbjct: 568 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIKDGKLDTDKLKRTIDVAV 627
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY+S+ A++FAD+SME
Sbjct: 628 RMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYASQAAVEFADKSMEA 687
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +G+LP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 688 VSYYAIQASCDLADERGAYETFQGSLWSKGVLPLDSQQILIEQRGQKYIDVDLNESLDWA 747
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R+++ G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 748 PVRARVQR-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 806
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 807 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 866
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLD 713
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G +++V+
Sbjct: 867 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTGKLNAVSNG 926
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S K C I D +CE+CQ
Sbjct: 927 NNSEDVVAAPAGPAPVPKACAI-----DEPDCEACQ 957
>gi|408480357|ref|ZP_11186576.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
R81]
Length = 965
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 587/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + +I KGI+ +LLN
Sbjct: 214 VEREPNYSFVTARLLMDTLRAEGLGFLKVADSATHHEMADLYAKALPAYIAKGIEFELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 274 PILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 454 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 514 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 574 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 694 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWA 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 754 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 813 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 873 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 928
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 929 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 965
>gi|254483512|ref|ZP_05096739.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[marine gamma proteobacterium HTCC2148]
gi|214036233|gb|EEB76913.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[marine gamma proteobacterium HTCC2148]
Length = 958
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/754 (60%), Positives = 583/754 (77%), Gaps = 18/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E+DP YS V ARLL ++ E Q D+ Y + +I +GI+ +LL+
Sbjct: 218 IEQDPNYSYVAARLLCDNLRAEALSFLGVATNATQADMGQLYAKALPAYIARGIELELLS 277
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA ++L L ALLPERDLQF YLGL+ LYDRYF+H + R E+PQ FFMR+AMGL+
Sbjct: 278 PNLAGYDLQRLGEALLPERDLQFTYLGLQTLYDRYFIHSDETRFELPQVFFMRVAMGLAA 337
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E+NR AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 338 EEANRNDRAIEFYELLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 397
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNG+SQG++PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 398 AMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGAVCA 457
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMD+EEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 458 YLETWHMDVEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFNGEDWTLFSPSDVPDL 517
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G FE+ Y YE G+IKLFK + A LWRK+L MLFETGHPW+TFKD CN+R
Sbjct: 518 HDLYGVAFEQRYAHYEAMAAAGEIKLFKTVKAENLWRKMLGMLFETGHPWMTFKDPCNLR 577
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ L+ KL+ T+R A+R
Sbjct: 578 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPQHIDENGLNLEKLRNTVRTAVR 637
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SNL HRPVGLG+MGFQD L+ + Y S++A+ FAD SME I
Sbjct: 638 MLDNVIDINYYSVPQAKNSNLMHRPVGLGLMGFQDALYKQHLAYGSEQAVSFADHSMEAI 697
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS+ELA E+G YSSY+GSLW QG+ P DSL+ L ERG+ Y++V+ +ES++W+
Sbjct: 698 SYYAIEASSELAAERGAYSSYEGSLWSQGVFPIDSLQRLIDERGADYIQVDQTESMDWQA 757
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+++++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV+
Sbjct: 758 LRSQVQQNGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVR 817
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLWD M+ +LKY+DG++ I RIP D++ IY+TAFE+ P W+++A S RQKWID
Sbjct: 818 DLKERGLWDGVMVNDLKYYDGSVQAIDRIPADIKGIYSTAFEVEPRWLVDAASRRQKWID 877
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+N +GKKLD TY++AW GLKTTYYLRS++A +KS ID+ L+ +
Sbjct: 878 QAQSLNLYINNANGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKST----IDTGTLNAV 933
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S N+ + C + D +CE+CQ
Sbjct: 934 S----NEAAGPAPVPQACSL-----DDPDCEACQ 958
>gi|425900936|ref|ZP_18877527.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397883426|gb|EJK99912.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 963
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/756 (61%), Positives = 586/756 (77%), Gaps = 12/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A+ FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVDFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+YA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 693 SFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIESRGQKYIDVDLNETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 927
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
S G + + + + ++E CE+CQ
Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963
>gi|398986356|ref|ZP_10691515.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM24]
gi|399015511|ref|ZP_10717781.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM16]
gi|398108474|gb|EJL98435.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM16]
gi|398152325|gb|EJM40846.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM24]
Length = 964
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 587/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|398879150|ref|ZP_10634252.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM67]
gi|398884202|ref|ZP_10639143.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM60]
gi|398195271|gb|EJM82321.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM60]
gi|398197511|gb|EJM84490.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM67]
Length = 964
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 587/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLNVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|418292660|ref|ZP_12904591.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379064074|gb|EHY76817.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 964
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/759 (60%), Positives = 587/759 (77%), Gaps = 11/759 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ KG+ +LL+
Sbjct: 207 VEREPNYSYVTARLLMDTLRAEALSFLEVAESATHHEMADLYAKALPAYVEKGVQFELLD 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L E++L+ L A+ E+D QF YLGL+ LYDRYF+H + +R E+PQ FFMR+AMGL++
Sbjct: 267 PRLKEYDLAKLGAAINHEQDQQFTYLGLQTLYDRYFIHKDNVRFELPQIFFMRVAMGLAI 326
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+++I++N
Sbjct: 327 EEENREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDAIRDN 386
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 387 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 446
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 447 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 506
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + GKIK +K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 507 HDLTGKAFEERYEYYEALIEYGKIKNYKTLQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 566
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+R A+R
Sbjct: 567 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPRHIVDGKLDTAKLERTVRTAVR 626
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SNL+HRPVGLGIMGFQD L++ IPY S AI+FAD+SME +
Sbjct: 627 MLDNVIDINYYSVPQAKNSNLKHRPVGLGIMGFQDALYLQHIPYGSDAAIEFADKSMEAV 686
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QG+LP DS ++L + RG KY+ V+++ESL+W
Sbjct: 687 SYYAIQASCDLADERGAYETFQGSLWSQGVLPLDSQQILIEARGQKYIDVDLTESLDWAP 746
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 747 VRARVKN-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 805
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 806 DLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 865
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----IDSVN 711
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G + + N
Sbjct: 866 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVSTGKLNAVSNGN 925
Query: 712 LDEIS-IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
D S E+ + + D +CE+CQ
Sbjct: 926 GDGFSAAPAKAAPAPEMSAGPAPVPKACAIDEPDCEACQ 964
>gi|399521496|ref|ZP_10762236.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110734|emb|CCH38796.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 957
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/712 (64%), Positives = 571/712 (80%), Gaps = 7/712 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM I+ E ++ Y + ++ KG + +LL+
Sbjct: 201 VEREPNYSYVTARLLMDNIRAEALSFLNITASATHHEMADLYAKALPAYVEKGAEFELLD 260
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKL E++L L AL ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 261 PKLKEYDLEKLGKALNHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 320
Query: 116 NES-NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
E NRE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +
Sbjct: 321 EEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHD 380
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 381 NAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 440
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 441 AYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSEVPD 500
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ GK FEE Y YE + GKIKL+K I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 501 LHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 560
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD KL +T++ A+
Sbjct: 561 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHINDGKLDIEKLGRTVKTAV 620
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SN +HRPVGLG+MGFQD L++ I Y S AI+FAD+SME
Sbjct: 621 RMLDNVIDINYYSVDQARNSNFKHRPVGLGLMGFQDALYLQHIAYGSDAAIEFADKSMEA 680
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS +LA+E+G YS+++GSLW +GILP DS ++L + RG KY+ V++SESL+W
Sbjct: 681 ISYYAIQASCDLADERGSYSTFEGSLWSKGILPLDSQQILIEARGQKYIDVDLSESLDWA 740
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R+KK G+RNSN +AIAPTATISNIIGVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 741 PIRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 799
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWI
Sbjct: 800 RDLKNRGLWDSVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQKWI 859
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 860 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 911
>gi|388257589|ref|ZP_10134768.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio sp.
BR]
gi|387938756|gb|EIK45308.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio sp.
BR]
Length = 980
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/771 (61%), Positives = 586/771 (76%), Gaps = 27/771 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEV---FG--KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P YS VTARLLM ++ E FG Q D+ Y + +I KG++ +L++
Sbjct: 215 VEKEPNYSFVTARLLMDKLRAEALSFFGVANSATQADMETLYAQTLPLYIKKGVELELIS 274
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L F+L L AL+ ERDLQF YLGL+ LYDRYF+H RIE+PQ FFMR+AMGL++
Sbjct: 275 PELQNFDLEKLGKALIAERDLQFTYLGLQTLYDRYFIHSNDTRIELPQIFFMRVAMGLAI 334
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 335 QEKNREDRAIEFYRLLSSFDYMSSTPTLFNSGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 394
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 395 AMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 454
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+D EEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV WTLFSP DVPDL
Sbjct: 455 YLETWHLDTEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDKEWTLFSPNDVPDL 514
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE + GKIK+FK + AL LWRK+L MLFETGHPWITFKD CN+R
Sbjct: 515 HDLYGKAFEERYEHYEREAAAGKIKVFKTVRALDLWRKMLGMLFETGHPWITFKDPCNLR 574
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQH G++HSSNLCTEITLNT N EI VCNLGSINL H+ +GKLD KL++T++ A+
Sbjct: 575 SPQQHAGVVHSSNLCTEITLNTKANDEIAVCNLGSINLAQHIVDGKLDQAKLERTVKTAI 634
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYYAV +K SNLRHRP+GLGIMGFQD L+ +I YSS+ A+ FAD SME
Sbjct: 635 RMLDNVIDINYYAVATSKQSNLRHRPIGLGIMGFQDALYEQRIAYSSQAAVDFADTSMEA 694
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS+ELA E+G+YS++DGSLW +GILP DS+++L + RG Y+KV+ S++ +W
Sbjct: 695 VSYYAIKASSELAAERGKYSTFDGSLWSKGILPIDSIEILAQNRGENYIKVDRSQTFDWA 754
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++K GMRNSN +AIAPTATISNI GV+ SIEPTY+NL++KSNLSGEFT +N +LV
Sbjct: 755 TLRAQVKAQGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGEFTVVNPHLV 814
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWD M+ +LKY++G+L +I RIP DL+ IYATAFE+ P WI+EA S RQKWI
Sbjct: 815 HDLKARGLWDAVMVNDLKYYEGSLQKIDRIPADLKAIYATAFEVEPKWIVEAASRRQKWI 874
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ +GKKLD TY++AW GLKTTYYLR+++A +KS G L+
Sbjct: 875 DQAQSLNLYIAGANGKKLDITYRMAWFSGLKTTYYLRALAATTTEKSTINTGA----LNA 930
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEIN----------------DVNECESCQ 749
+S G L K + SE+ D +CE+CQ
Sbjct: 931 VSAGGGASGLSAAPAAAKPAV-SEVEAASFAEAAPVPLACSIDNPDCEACQ 980
>gi|421529926|ref|ZP_15976440.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida S11]
gi|402212613|gb|EJT83996.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
putida S11]
Length = 819
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/757 (61%), Positives = 587/757 (77%), Gaps = 18/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KG++ +LL+
Sbjct: 73 VEREPNYSFVTARLLMDTLRAEGLGFLNVAESATHHEMADLYAKALPAYVEKGVEFELLD 132
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L ++L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+L
Sbjct: 133 PALKSYDLERLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGLAL 192
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 193 EEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 252
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 253 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 312
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 313 YLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 372
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIK+FK I A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 373 HDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 432
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+ A+R
Sbjct: 433 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVR 492
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME +
Sbjct: 493 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAV 552
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+YA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG+KY+ VN+ ESL+W
Sbjct: 553 SFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVNLEESLDWAP 612
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 613 VRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 671
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 672 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 731
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +
Sbjct: 732 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNAV 787
Query: 716 SIKGYNKNLQEIKNN---KKCLINSEINDVNECESCQ 749
S G + +Q K C I D +CE+CQ
Sbjct: 788 SSGGDSAPVQAAGPAPVPKACAI-----DEPDCEACQ 819
>gi|414172326|ref|ZP_11427237.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia
broomeae ATCC 49717]
gi|410894001|gb|EKS41791.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia
broomeae ATCC 49717]
Length = 972
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/767 (59%), Positives = 590/767 (76%), Gaps = 26/767 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEIK--QIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P Y+ V+ARLL+ ++ EV +I Q D+ +Y EYF ++ KGI+ +LL
Sbjct: 214 VEQEPNYAYVSARLLLDKLRTEVLSFVHAAQISATQADMAARYVEYFPVYVKKGIEAELL 273
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA ++L ++ AL PERDL F +LGL+ LYDRYFLH +G RIE+PQ FFMR+AMGL+
Sbjct: 274 DPELARYDLKRIAAALKPERDLSFQFLGLQTLYDRYFLHQDGNRIELPQAFFMRVAMGLA 333
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+S+K+
Sbjct: 334 IREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADDLDGIFKSVKD 393
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT+VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 394 NALLAKYSGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 453
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV WTLFSP + PD
Sbjct: 454 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEADGEWTLFSPDEAPD 513
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +GK F E Y YE + G++++FK + A LWR++L+MLFETGHPWITFKD CN+
Sbjct: 514 LHDLYGKAFAERYAFYEAKAARGEMRVFKTLRATDLWRRMLTMLFETGHPWITFKDPCNL 573
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG+IHSSNLCTEITLNTS +E+ VCNLGS+NL H+ G +D +LK+TI AM
Sbjct: 574 RSPQQHVGVIHSSNLCTEITLNTSDDEVAVCNLGSVNLLNHVGEGGIDHARLKRTISTAM 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNL+HRPVGLG+MGFQD LH ++IP +S A+ FAD SME
Sbjct: 634 RMLDNVIDINFYTIPEARRSNLQHRPVGLGLMGFQDALHALRIPMASDAAVAFADTSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A AS +LA E+G+Y S+ GSLW +GILP DS+++L RG L + S +L+W
Sbjct: 694 ISFHAISASVDLAAERGQYPSFKGSLWSRGILPIDSIEILADARGG--LDADWSATLDWT 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ GMRNSN +AIAPTATISNI GV+ SIEP Y+NL++KSN+SG+FTE+N +LV
Sbjct: 752 ALRARVQSVGMRNSNVMAIAPTATISNICGVAQSIEPAYQNLYVKSNMSGDFTEVNEFLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE M+++LKYFDG++ I R+PDDL+ +YATAFEI W+IEA + RQKWI
Sbjct: 812 RDLKARGLWDEVMVSDLKYFDGSVGSIDRVPDDLKLLYATAFEIDSAWLIEAAARRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N SGKKLD+ Y+LAW RGLKTTYYLRS SA + +KS + G D L+
Sbjct: 872 DQAQSLNLYIANPSGKKLDQLYRLAWTRGLKTTYYLRSRSATHVEKSTLK-GTDG-KLNA 929
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEIN------------DVNECESCQ 749
+S + L + NK +I+ D +CE+CQ
Sbjct: 930 VS----STPLASLPVNKPIVISQASTAPDLSDAVACSIDNPDCEACQ 972
>gi|398862928|ref|ZP_10618510.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM78]
gi|398249538|gb|EJN34923.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM78]
Length = 964
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/757 (61%), Positives = 588/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLGFLGVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 273 PVLADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ GKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVGGKLDTAKLQRTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V++ ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLKESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|397687575|ref|YP_006524894.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri DSM 10701]
gi|395809131|gb|AFN78536.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri DSM 10701]
Length = 965
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/711 (63%), Positives = 569/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y + ++ KG++ +LL+
Sbjct: 208 VEREPNYSYVTARLLMDTLRAEALGFLDVAEAATHHEMADLYAKALPAYVEKGVEFELLD 267
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L EF+L+ L A+ E+D QF YLGL+ LYDRYF+H + IR E+PQ FFMR+AMGL++
Sbjct: 268 PRLKEFDLAKLGAAINHEQDQQFTYLGLQTLYDRYFIHKDNIRFELPQIFFMRVAMGLAI 327
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI++SI++N
Sbjct: 328 EEEQREARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDSIRDN 387
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 388 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 447
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 448 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 507
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + GKIK K + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 508 HDLTGKAFEERYEYYEAMIEYGKIKNHKTLQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 567
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD KL++T+R A+R
Sbjct: 568 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPNHIVDGKLDTAKLERTVRTAVR 627
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN +HRPVGLGIMGFQD L++ IPY S AI FAD+SME +
Sbjct: 628 MLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIDFADKSMEAV 687
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW QGILP DS ++L + RG KY+ +++SESL+W
Sbjct: 688 SYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEARGQKYIDIDLSESLDWAP 747
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 748 VRARVKN-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 806
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+ +YATAFE+ WI++A S RQKWID
Sbjct: 807 DLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWID 866
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 867 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG 917
>gi|398996294|ref|ZP_10699154.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM21]
gi|398127253|gb|EJM16666.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
sp. GM21]
Length = 964
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/757 (61%), Positives = 587/757 (77%), Gaps = 13/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + +I KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLNVAESATHHEMVDLYAKALPAYIAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK FEE Y YE ++ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 513 HDLTGKAFEERYEYYEALSEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KL++T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ IPY S A++FAD+SME
Sbjct: 633 RMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V+++ESL+W
Sbjct: 693 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESLDWA 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 753 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 811
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 812 RDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 871
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 872 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG----KLNA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
+S G + + + ++E CE+CQ
Sbjct: 928 VSSGGNHGEDSVLAAPAGPAPVPKACAIDEPDCEACQ 964
>gi|254449375|ref|ZP_05062817.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
proteobacterium HTCC5015]
gi|198261021|gb|EDY85324.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
proteobacterium HTCC5015]
Length = 839
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/709 (64%), Positives = 573/709 (80%), Gaps = 9/709 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF------GKEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EKDP YSQV+ARLL+ +++E Q ++ +Y EYF +I + ++ +LL
Sbjct: 40 IEKDPNYSQVSARLLLDSMREEALTFLGDGAPAATQAEMQERYPEYFKHYIARAVELELL 99
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGL 113
+ ++ F+L L ALLPERD F YLGL+ LYDRYF+H + G+R E+PQ FFMR+AMGL
Sbjct: 100 DGEMHNFDLERLGQALLPERDQGFTYLGLQTLYDRYFIHDDSGVRFELPQAFFMRVAMGL 159
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE +RE+ AI+FY LLSSF+FM STPTLFNS T+R QLSSCYL+TVPDDL GIF ++K
Sbjct: 160 AINEVDREERAIEFYTLLSSFDFMSSTPTLFNSATLRPQLSSCYLTTVPDDLDGIFSAVK 219
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
++A+LSK+AGGLGNDWT+VR+LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+
Sbjct: 220 DDAMLSKFAGGLGNDWTRVRALGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAM 279
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
CAYLE+WH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP DV
Sbjct: 280 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVAEDGEWTLFSPNDVD 339
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
DLH+ GK+FE++Y YE + G+IKLFK++ A+ LWRK+L MLFETGHPWITFKD CN
Sbjct: 340 DLHDLVGKKFEKAYTAYEAKADSGEIKLFKRVKAVDLWRKMLGMLFETGHPWITFKDPCN 399
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRI 412
+RSPQQH G++HSSNLCTEITLNTS EI VCNLGS+N+ H+ + G+LD KL++TI+
Sbjct: 400 LRSPQQHAGVVHSSNLCTEITLNTSDMEIAVCNLGSVNMAQHVTEEGELDVAKLERTIKT 459
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
AMRMLDNVID NYY+V +A+ SN+RHRPVGLGIMGFQD L+ + Y S EA++FAD++M
Sbjct: 460 AMRMLDNVIDYNYYSVPQARRSNIRHRPVGLGIMGFQDALYKKGVAYQSDEAVEFADRAM 519
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E + YYA +S +LAEE+G YSS+ GSLW +GILP DS+ +L + RG +L+V+ S++++
Sbjct: 520 EAVSYYAISSSVDLAEERGAYSSFPGSLWSRGILPIDSIDILAEHRGD-FLQVDRSQTMD 578
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR R+++ GMRNSNC+AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN Y
Sbjct: 579 WDSLRQRVRESGMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPY 638
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LVKELK + LWD+ M+ +LKY+DG++ I RIPDDLR+IY+TAFEI W++EAGS RQK
Sbjct: 639 LVKELKARNLWDDVMVNDLKYYDGSVHPIERIPDDLRQIYSTAFEIDARWLVEAGSRRQK 698
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
WIDQ QSLN+Y+S SGKKLD YKLAW RGLKTTYYLRS+ A + +K+
Sbjct: 699 WIDQGQSLNLYMSEPSGKKLDNLYKLAWARGLKTTYYLRSMGATHVEKT 747
>gi|330504345|ref|YP_004381214.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
mendocina NK-01]
gi|328918631|gb|AEB59462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
mendocina NK-01]
Length = 968
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/712 (64%), Positives = 571/712 (80%), Gaps = 7/712 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM I+ E ++ Y + ++ KG++ +LL+
Sbjct: 212 VEREPNYSYVTARLLMDNIRAEALSFLSIAASATHHEMADLYAKALPAYVEKGVEFELLD 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL F+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 272 AKLKTFDLEKLGAAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAI 331
Query: 116 NES-NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
E NRE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +
Sbjct: 332 EEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHD 391
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 392 NAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 451
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 452 AYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSEVPD 511
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ GK FEE Y YE + GKIKL+K I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 LHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGS+NL H+ +GKLD KL +T++ A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIVDGKLDIEKLGRTVKTAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNL+HRPVGLG+MGFQD L++ I Y S AI+FAD+SME
Sbjct: 632 RMLDNVIDINYYSVDQARNSNLKHRPVGLGLMGFQDALYLQHIAYGSDAAIEFADKSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS +LA+E+G YS+++GSLW +GILP DS +LL + RG KY+ V++SESL+W
Sbjct: 692 ISYYAIQASCDLADERGSYSTFEGSLWSKGILPLDSQQLLIEARGQKYIDVDLSESLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R+KK G+RNSN +AIAPTATISNIIGVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PIRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 922
>gi|339493625|ref|YP_004713918.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|338800997|gb|AEJ04829.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 960
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/711 (64%), Positives = 573/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 207 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYIEKGVEFELLD 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H + +R E+PQ FFMR+AMGL++
Sbjct: 267 SKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFELPQIFFMRVAMGLAI 326
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI++SI++N
Sbjct: 327 EEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDSIRDN 386
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 387 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 446
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 447 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSDVPDL 506
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 507 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 566
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+R A+R
Sbjct: 567 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDSAKLERTVRTAVR 626
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 627 MLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 686
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G YSS+DGSLW +GILP DS ++L + RG KY+ V++SESL+W
Sbjct: 687 SYFAIQASCDLADERGAYSSFDGSLWSKGILPLDSQQILIEARGQKYIDVDLSESLDWAP 746
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 747 IRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 805
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 806 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDMYATAFEVETRWIVDAASRRQKWID 865
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 866 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 916
>gi|431805705|ref|YP_007232606.1| ribonucleotide reductase subunit alpha [Liberibacter crescens BT-1]
gi|430799680|gb|AGA64351.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Liberibacter crescens BT-1]
Length = 953
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/760 (61%), Positives = 585/760 (76%), Gaps = 32/760 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E DP Y++V+ARLL+ ++ EV ++ Q + Y +YF +I GID +LL
Sbjct: 215 IETDPEYTKVSARLLLDKLRLEVLTFIYKKPQKATQAKMTEYYADYFHNYIKVGIDAELL 274
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
NP L+ F+L L+ +L PERDL F YLGL+ LYDRY LH++GI EMPQ FFMR+AMGL+
Sbjct: 275 NPSLSSFDLDSLAASLKPERDLSFEYLGLQTLYDRYLLHVDGIHFEMPQAFFMRVAMGLA 334
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
LNE N+EK AI+FY+LLSSF+FMCSTPTLFNSGT+R QLSSC+L+T PDDL GIF+SIK+
Sbjct: 335 LNEDNQEKRAIEFYDLLSSFSFMCSTPTLFNSGTLRPQLSSCFLTTFPDDLDGIFKSIKD 394
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GG+GNDWT+VR LG+ I+GTNG+SQG++PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 395 NALLAKYSGGIGNDWTRVRGLGAHIRGTNGKSQGLVPFLKVTNDTAVAVNQGGKRKGAVC 454
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP + PD
Sbjct: 455 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVENNDVWTLFSPDETPD 514
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH +G+ FE +Y YE + GKIK+FK++ A+ LWRK+L+MLFETGHPWITFKD CNI
Sbjct: 515 LHELYGRSFENAYKAYEEKALQGKIKIFKQVQAVNLWRKMLTMLFETGHPWITFKDPCNI 574
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH+G++HSSNLCTEITLNTS +E+ VCNLGSINL H+ + KLD KL KTI AM
Sbjct: 575 RSPQQHIGVVHSSNLCTEITLNTSDDEVAVCNLGSINLAAHLLSDKLDYDKLAKTIYTAM 634
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y +K+A+ SNL+HRP+G+GIMGFQD LH ++IPY+S +AI +D+SME
Sbjct: 635 RMLDNVIDINFYTIKEAQNSNLKHRPIGMGIMGFQDVLHALRIPYASNKAIDLSDESMEY 694
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A AS +LA E+G Y+S+ GSLW +GILP DSL LL+ RG L V+ S L+W
Sbjct: 695 ISFHAISASVDLALERGPYASFQGSLWSKGILPIDSLHLLKDNRGE--LNVDFSSKLDWS 752
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR+R+K G+RNSNC+AIAPTATISNI GVS SIEP Y+NL +KSN+SG+FT +N LV
Sbjct: 753 ILRDRVKSIGIRNSNCMAIAPTATISNICGVSQSIEPAYQNLFVKSNMSGDFTIVNASLV 812
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK++GLWD M+ +LKY+DG++ +I RIPDDL+ +YATAFEI P W+IEA + RQKWI
Sbjct: 813 RDLKERGLWDTVMVFDLKYYDGSIGKIDRIPDDLKDLYATAFEIEPIWLIEAAARRQKWI 872
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLNIY+SN SGKKLD Y+ AW +GLKTTYYLRS SA + +KS
Sbjct: 873 DQAQSLNIYLSNPSGKKLDFIYRKAWEKGLKTTYYLRSSSATHVEKSTL----------- 921
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEI-----NDVNECESCQ 749
N + K N C INS ++ + CE CQ
Sbjct: 922 --------NKVDGKLNAVCPINSSYTKEYDSESSTCEVCQ 953
>gi|404400803|ref|ZP_10992387.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
fuscovaginae UPB0736]
Length = 968
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/711 (64%), Positives = 570/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKE-----VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E + ++ Y + ++ KGI+ +LLN
Sbjct: 213 VEREPNYSFVTARLLMDTLRAEGLSFLAVAESATHHEMADLYAKALPAYVAKGIEFELLN 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE+ AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEKQREERAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 452
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 453 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVPDL 512
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE T+ KIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 513 HDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLR 572
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NG+LD KL++T+ A+R
Sbjct: 573 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGQLDTAKLQRTVNTAVR 632
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +AK SN +HRPVGLGIMGFQD L++ I Y S A++FAD+SME +
Sbjct: 633 MLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADKSMEAV 692
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L + RG KY+ V+++E+L+W
Sbjct: 693 SYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWAP 752
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV+
Sbjct: 753 VRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVR 811
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWID
Sbjct: 812 DLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKWID 871
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 872 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 922
>gi|254516738|ref|ZP_05128797.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
proteobacterium NOR5-3]
gi|219675161|gb|EED31528.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
proteobacterium NOR5-3]
Length = 967
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/754 (61%), Positives = 574/754 (76%), Gaps = 17/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P Y+ +ARLL ++ E + Q D+ Y + S +I +G++ +LL+
Sbjct: 226 IEQEPNYTYASARLLCDNLRTEALTFLGVAESATQGDMDRYYPQALSAYIKRGVELELLD 285
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+++L L A+LPERDLQF YLGL+ LYDRYF+H + +RIE+PQ FFMR+AMGL++
Sbjct: 286 PTLADYDLEQLGAAILPERDLQFTYLGLQTLYDRYFIHSDEVRIELPQIFFMRVAMGLAV 345
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 346 EEEHREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 405
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C+
Sbjct: 406 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCS 465
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 466 YLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFSPNDVPDL 525
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE G+IK K + A LWRK+L MLFETGHPW+TFKD CN+R
Sbjct: 526 HDLYGKAFEERYNTYEAMAANGEIKNHKTVKAQNLWRKMLGMLFETGHPWMTFKDPCNLR 585
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS +EI VCNLGSINL H+ L+ KL++T+R A+R
Sbjct: 586 SPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHIDENGLNLEKLEQTVRTAVR 645
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V A+ SN RHRPVGLG+MGFQD L+ I Y S A++FAD+SME I
Sbjct: 646 MLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQHIAYGSDAAVEFADRSMEAI 705
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS+ LA E+G YSSY+GSLW QGILP DSL L ERGS Y+KV+ + +L+W+
Sbjct: 706 SYYAIDASSSLAAERGAYSSYEGSLWSQGILPIDSLSKLVDERGSDYIKVDSTTTLDWES 765
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR +K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 766 LRTSVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 825
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ I RIP DLR IY+ AFE+ P WI+E S RQKWID
Sbjct: 826 DLKARGLWDSVMVNDLKYYDGSVQSIERIPADLRAIYSNAFEVEPKWIVECASRRQKWID 885
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+N SGKKLD TY++AW GLKTTYYLRS++A +KS G ++
Sbjct: 886 QAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKSTIATG-------QL 938
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + Q + C + D +CE+CQ
Sbjct: 939 NAVSSSAEPQPAPVPQACSL-----DDPDCEACQ 967
>gi|422667871|ref|ZP_16727731.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330980157|gb|EGH78343.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 971
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/770 (61%), Positives = 587/770 (76%), Gaps = 31/770 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFIN-KGIDNKLL 54
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LL
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVTPAGIKFELL 271
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
NP LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL+
Sbjct: 272 NPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLA 331
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +
Sbjct: 332 IEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHD 391
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 392 NAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 451
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPD
Sbjct: 452 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPD 511
Query: 295 LHNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
LH+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN
Sbjct: 512 LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCN 571
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A
Sbjct: 572 LRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVA 631
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 VRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSME 691
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 AVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDW 751
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YL
Sbjct: 752 APVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYL 810
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKW
Sbjct: 811 VRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKW 870
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
IDQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+
Sbjct: 871 IDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLN 926
Query: 714 EISIKGYNKNLQEIKNNK--------------KCLINSEINDVNECESCQ 749
+S G+ + I + C I D +CE+CQ
Sbjct: 927 AVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 971
>gi|452750358|ref|ZP_21950108.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri NF13]
gi|452005731|gb|EMD98013.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri NF13]
Length = 960
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/711 (64%), Positives = 572/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 207 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYIEKGVEFELLD 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H +R E+PQ FFMR+AMGL++
Sbjct: 267 SKLKSYDLAKLGAALDHERDQQFTYLGLQTLYDRYFIHKNDVRFELPQIFFMRVAMGLAI 326
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+++I++N
Sbjct: 327 EEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDAIRDN 386
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 387 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 446
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 447 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSDVPDL 506
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 507 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 566
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+R A+R
Sbjct: 567 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDSAKLERTVRTAVR 626
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 627 MLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 686
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G YSS+DGSLW +GILP DS ++L + RG KY+ V++SESL+W
Sbjct: 687 SYYAIQASCDLADERGAYSSFDGSLWSKGILPLDSQQILIEARGQKYIDVDLSESLDWAP 746
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 747 IRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 805
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 806 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVDAASRRQKWID 865
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 866 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 916
>gi|431927834|ref|YP_007240868.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
stutzeri RCH2]
gi|431826121|gb|AGA87238.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
stutzeri RCH2]
Length = 960
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/711 (64%), Positives = 573/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 207 VEREPNYSQVTARLLMDTLRAEALGFLGVAEAATHHEMADLYAKALPAYIEKGVEFELLD 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H + +R E+PQ FFMR+AMGL++
Sbjct: 267 SKLKGYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFELPQIFFMRVAMGLAI 326
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+++I++N
Sbjct: 327 EEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDAIRDN 386
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 387 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 446
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 447 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSDVPDL 506
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 507 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 566
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+K+GKLD KL++T+R A+R
Sbjct: 567 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIKDGKLDAAKLERTVRTAVR 626
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 627 MLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 686
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G YSS+ GSLW QGILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 687 SYFAIQASCDLADERGAYSSFQGSLWSQGILPLDSQQILIEARGQKYIDVDLTESLDWAP 746
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 747 IRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 805
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 806 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDMYATAFEVETKWIVDAASRRQKWID 865
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 866 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 916
>gi|146282011|ref|YP_001172164.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri A1501]
gi|145570216|gb|ABP79322.1| ribonucleoside reductase, large chain [Pseudomonas stutzeri A1501]
Length = 961
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/711 (64%), Positives = 573/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 207 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYIEKGVEFELLD 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H + +R E+PQ FFMR+AMGL++
Sbjct: 267 SKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFELPQIFFMRVAMGLAI 326
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI++SI++N
Sbjct: 327 EEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDSIRDN 386
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 387 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 446
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 447 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSDVPDL 506
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 507 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 566
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+R A+R
Sbjct: 567 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDAAKLERTVRTAVR 626
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 627 MLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 686
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G YSS++GSLW +GILP DS ++L + RG KY+ V++SESL+W
Sbjct: 687 SYFAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARGQKYIDVDLSESLDWAP 746
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 747 VRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 805
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 806 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQKWID 865
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 866 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 916
>gi|119478321|ref|ZP_01618352.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
proteobacterium HTCC2143]
gi|119448661|gb|EAW29906.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
proteobacterium HTCC2143]
Length = 962
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/754 (61%), Positives = 579/754 (76%), Gaps = 12/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P YS VTARLL+ ++ E Q ++ Y + +INKGI+ +LL
Sbjct: 216 VEKEPNYSYVTARLLLDNLRAEALPFLGIANSATQSEMASLYAKALPAYINKGIELELLA 275
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L +++L L AL RD FNYLGL+ LYDRYF+H IRIE+PQ FFMR+AMGL+
Sbjct: 276 PNLLDYDLDKLGQALDANRDQLFNYLGLQTLYDRYFIHSNDIRIELPQIFFMRVAMGLAY 335
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 336 REENREDRAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 395
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 396 AMLSKWAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 455
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV WTLFSP DVPDL
Sbjct: 456 YLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDGEWTLFSPNDVPDL 515
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE Y YE Q K G +KLFK + A LWRK+L MLFETGHPWITFKD CNIR
Sbjct: 516 HDLYGEAFETRYTEYEAQCKSGDMKLFKTVRAQELWRKMLGMLFETGHPWITFKDPCNIR 575
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNTSK EI VCNLGS+NL H+ LD KL+KTI A+R
Sbjct: 576 SPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSVNLAQHVSENGLDLSKLEKTITTAVR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN+RHRPVGLG+MGFQD L+ + Y S +A++FAD+SME I
Sbjct: 636 MLDNVIDINYYSVGQAETSNMRHRPVGLGLMGFQDALYNQHMAYGSDQAVEFADRSMEAI 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS+ LAEE+G YS+++GSLW QGILP DS+K L ERG+ Y+ V+ S++L+W
Sbjct: 696 SYFAIQASSALAEERGSYSTFEGSLWSQGILPIDSVKTLIAERGNDYIDVDQSQTLDWSS 755
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R+++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N +LVK
Sbjct: 756 LRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPHLVK 815
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY++G+L I R+P +++++YATAFE+ P WI++A S RQKWID
Sbjct: 816 DLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEPRWIVDAASRRQKWID 875
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YIS SGKKLD TY++AW +GLKTTYYLR+++A +KS + G S+N
Sbjct: 876 QAQSLNLYISGASGKKLDITYRMAWYKGLKTTYYLRALAATGTEKSTIDTG--SLNAVSS 933
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + C + D +CE+CQ
Sbjct: 934 KTEAPVAAAGPAPVPEACSL-----DDPDCEACQ 962
>gi|226227155|ref|YP_002761261.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
aurantiaca T-27]
gi|226090346|dbj|BAH38791.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
aurantiaca T-27]
Length = 957
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/755 (59%), Positives = 590/755 (78%), Gaps = 13/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEI--KQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P Y+ V+ARLL+ ++ EV G+E+ + D+ Y +YF F+ +GID LL
Sbjct: 210 VETEPNYAYVSARLLLERLRAEVLSGIHGQEVEARPADMTRHYVDYFPLFVARGIDTGLL 269
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA F+L L++AL PERDL F YLGL+ LYDRY LH +G+R+E+PQ FFMR+AMGL+
Sbjct: 270 DPELARFDLHRLASALRPERDLAFRYLGLQTLYDRYLLHNDGVRLELPQTFFMRVAMGLA 329
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE AI+FY LLSSF+FMCSTPTLFNSGT R+QLSSC+L+TVPDDL GIF+S+K+
Sbjct: 330 LREVDREARAIEFYELLSSFDFMCSTPTLFNSGTPRAQLSSCFLTTVPDDLDGIFKSVKD 389
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDW++VR LGS I+GTNGRSQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 390 NALLAKYSGGLGNDWSRVRGLGSYIRGTNGRSQGVVPFLKVANDTAVAVNQGGKRKGAVC 449
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIE+F++LRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLFSP +VPD
Sbjct: 450 AYLETWHIDIEDFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVEEDGDWTLFSPDEVPD 509
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G+ F E Y+ +E + + G++ + K++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 510 LHDLYGRAFAERYVQHEIRAERGEVTVHKRVKAVDLWRRMLTMLFETGHPWITFKDPCNL 569
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G+IHSSNLCTEITLNTS +E+ VCNLGS+NL H+ G +D +L T+R A+
Sbjct: 570 RSPQQHTGVIHSSNLCTEITLNTSDSEVAVCNLGSVNLANHISGGGIDRARLANTVRTAV 629
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRPVGLGIMGFQD LH++++PY+S+ AI+FAD+SME
Sbjct: 630 RMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALHMLRVPYASEAAIRFADESMEF 689
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y A AS++LA E+G Y S++GSLW +GILP DSL LL+ R + L+ + S L+W
Sbjct: 690 LSYEAIAASSDLAVERGSYGSFNGSLWQRGILPIDSLALLDASREGR-LECDRSSRLDWS 748
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ G+RNSN +AIAPTATISNI GVS SIEP+YRNL +KSN+SGEFTE+N YLV
Sbjct: 749 SLRERVQTQGIRNSNLLAIAPTATISNICGVSQSIEPSYRNLFVKSNMSGEFTEVNEYLV 808
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE M+ +LKYFDG+L I R+P+DL+++Y TAFE+ W+IEA + RQKWI
Sbjct: 809 QDLKSRGLWDEVMVGDLKYFDGSLGPIDRVPEDLKQLYMTAFEVDCAWLIEAAARRQKWI 868
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ +G++LD Y+LAW RGLKTTYYLRS +A + +KS +N
Sbjct: 869 DQAQSLNLYVARPNGRQLDTLYRLAWRRGLKTTYYLRSQAATHVEKSTLTRTDGKLNAVA 928
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ ++ + C I D +CE+CQ
Sbjct: 929 VAAAQTVSAIEAV-TAPACSI-----DNPDCEACQ 957
>gi|392420824|ref|YP_006457428.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri CCUG 29243]
gi|390983012|gb|AFM33005.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
stutzeri CCUG 29243]
Length = 959
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/711 (64%), Positives = 572/711 (80%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 206 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYIEKGVEFELLD 265
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H +R E+PQ FFMR+AMGL++
Sbjct: 266 SKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKNDVRFELPQIFFMRVAMGLAI 325
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+++I++N
Sbjct: 326 EEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDAIRDN 385
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 386 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 445
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 446 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDVPWTLFSPSDVPDL 505
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 506 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 565
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+K+GKLD KL++T+R A+R
Sbjct: 566 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIKDGKLDAAKLERTVRTAVR 625
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 626 MLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 685
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G YSS+ GSLW QGILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 686 SYFAIQASCDLADERGAYSSFQGSLWSQGILPLDSQQILIEARGQKYIDVDLTESLDWAP 745
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 746 IRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 804
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 805 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDMYATAFEVETKWIVDAASRRQKWID 864
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 865 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTG 915
>gi|409397756|ref|ZP_11248619.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
Chol1]
gi|409117890|gb|EKM94316.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
Chol1]
Length = 962
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/755 (61%), Positives = 587/755 (77%), Gaps = 7/755 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YSQVTARLLM ++ E G + ++ Y + +I KG++ +LL+
Sbjct: 209 VEREPNYSQVTARLLMDTLRAEALGFLGVAESATHHEMADLYAKALPAYIEKGVEFELLD 268
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
KL ++L+ L AL ERD QF YLGL+ LYDRYF+H +R E+PQ FFMR+AMGL++
Sbjct: 269 SKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKNDVRFELPQIFFMRVAMGLAI 328
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+++I++N
Sbjct: 329 EEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLGGIYDAIRDN 388
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 389 ALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 448
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 449 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSDVPDL 508
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G+ FEE Y YE TK GKIKLFK + A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 509 HDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFETGHPWLTFKDPCNLR 568
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KL++T+R A+R
Sbjct: 569 SPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHITDGKLDAAKLERTVRTAVR 628
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ +N +HRPVGLGIMGFQD L++ I Y S AI FAD+SME I
Sbjct: 629 MLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYGSDAAIDFADKSMEAI 688
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS +LA+E+G YSS+ GSLW QGILP DS ++L + RG KY+ V+++ESL+W
Sbjct: 689 SYFAIQASCDLADERGAYSSFQGSLWSQGILPLDSQQILIEARGQKYIDVDLTESLDWAP 748
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R+KK G+RNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 749 IRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVH 807
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ WI++A S RQKWID
Sbjct: 808 DLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVDAASRRQKWID 867
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDE 714
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G +++V+
Sbjct: 868 QAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTINTGKLNAVSSGG 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ + + D +CE+CQ
Sbjct: 928 SEAANSASAAPAVEPQPAPVPLACSIDNPDCEACQ 962
>gi|397667501|ref|YP_006509038.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Legionella pneumophila subsp. pneumophila]
gi|395130912|emb|CCD09161.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Legionella pneumophila subsp. pneumophila]
Length = 942
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/760 (61%), Positives = 592/760 (77%), Gaps = 35/760 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK----------EIKQIDIPIKYKEYFSKFINKGID 50
+EK+P Y+ V+ARLL+ ++ E K E+ QI Y YF +I +GI
Sbjct: 207 VEKEPNYTYVSARLLLDSLRSEALTKLNIKSEATFDEMAQI-----YPVYFKSYIEQGIA 261
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+L+PK+A+F+L LS ALLPERD++F YL L+ LYDRYF+H G+R E+PQ FFMR+A
Sbjct: 262 QGMLDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVA 321
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
MGL+L E ++E+ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPD L GI+
Sbjct: 322 MGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYS 381
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
+IK+NALLSKYAGGLGNDWT VR++G+ IKGTNG+SQGV+PFL V + AVAVNQGGKRK
Sbjct: 382 AIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRK 441
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA+CAYLE WH D+EEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKRV + WTLFSP
Sbjct: 442 GAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPD 501
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+VPDLH+++GK FE Y+ YE + + G I+ K ISA+ LWR++LSMLFETGHPW+TFKD
Sbjct: 502 EVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKD 561
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
CN+RSPQQH G+IHSSNLCTEITLNTS+ EI VCNLGSINL H+KNGKLD KLK+TI
Sbjct: 562 PCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTI 621
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
A+RMLDNVIDINYY+V +A+ SNL+HRPVGLGIMGFQD L+ +K+ Y+SKEAI+FAD
Sbjct: 622 STAVRMLDNVIDINYYSVPQARNSNLQHRPVGLGIMGFQDALYELKMDYASKEAIEFADS 681
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
SME+I YYA AS +LA+E+G YS+Y+GSLW +GILP DS+ LL++ R +KYL+ + S+
Sbjct: 682 SMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSR-NKYLEQDRSQK 740
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
L+W+ LR +++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N
Sbjct: 741 LDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVN 800
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV +LK LWDE M+ +LKYF+G++ ISRIPD+L++ YAT+FEI P W++EA S R
Sbjct: 801 PYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRR 860
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDS 709
QKWIDQ+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS G +++
Sbjct: 861 QKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTVTDGALNA 920
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
V L + K C I +CE+CQ
Sbjct: 921 VKLIDTEPKA-------------CSITDP-----DCEACQ 942
>gi|148359318|ref|YP_001250525.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
pneumophila str. Corby]
gi|148281091|gb|ABQ55179.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
pneumophila str. Corby]
Length = 917
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/760 (61%), Positives = 592/760 (77%), Gaps = 35/760 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK----------EIKQIDIPIKYKEYFSKFINKGID 50
+EK+P Y+ V+ARLL+ ++ E K E+ QI Y YF +I +GI
Sbjct: 182 VEKEPNYTYVSARLLLDSLRSEALTKLNIKSEATFDEMAQI-----YPVYFKSYIEQGIA 236
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+L+PK+A+F+L LS ALLPERD++F YL L+ LYDRYF+H G+R E+PQ FFMR+A
Sbjct: 237 QGMLDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVA 296
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
MGL+L E ++E+ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPD L GI+
Sbjct: 297 MGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYS 356
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
+IK+NALLSKYAGGLGNDWT VR++G+ IKGTNG+SQGV+PFL V + AVAVNQGGKRK
Sbjct: 357 AIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRK 416
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA+CAYLE WH D+EEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKRV + WTLFSP
Sbjct: 417 GAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPD 476
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+VPDLH+++GK FE Y+ YE + + G I+ K ISA+ LWR++LSMLFETGHPW+TFKD
Sbjct: 477 EVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKD 536
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
CN+RSPQQH G+IHSSNLCTEITLNTS+ EI VCNLGSINL H+KNGKLD KLK+TI
Sbjct: 537 PCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTI 596
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
A+RMLDNVIDINYY+V +A+ SNL+HRP+GLGIMGFQD L+ +K+ Y+SKEAI+FAD
Sbjct: 597 STAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADS 656
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
SME+I YYA AS +LA+E+G YS+Y+GSLW +GILP DS+ LL++ R +KYL+ + S+
Sbjct: 657 SMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSR-NKYLEQDRSQK 715
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
L+W+ LR +++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N
Sbjct: 716 LDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVN 775
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV +LK LWDE M+ +LKYF+G++ ISRIPD+L++ YAT+FEI P W++EA S R
Sbjct: 776 PYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRR 835
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDS 709
QKWIDQ+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS G +++
Sbjct: 836 QKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTVTDGALNA 895
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
V L + K C I +CE+CQ
Sbjct: 896 VKLIDTEPKA-------------CSITDP-----DCEACQ 917
>gi|254428366|ref|ZP_05042073.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Alcanivorax sp. DG881]
gi|196194535|gb|EDX89494.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Alcanivorax sp. DG881]
Length = 962
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/754 (61%), Positives = 583/754 (77%), Gaps = 12/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P YSQVTARLLM I+ E + ++ Y E +I KGI+ +LL+
Sbjct: 216 IEVEPNYSQVTARLLMDKIRAEALQFLNVAERASHDEMNALYGEALKAYIGKGIELELLS 275
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LAE++L L AL RDLQF+YLGL+ LYDRYF+H RIE+PQ FFMR+AMGL++
Sbjct: 276 PQLAEYDLDKLGAALDGNRDLQFSYLGLQTLYDRYFIHHNDTRIELPQCFFMRVAMGLAV 335
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 336 EEDNREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 395
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LG+ IKGTNGRSQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 396 AMLSKFAGGLGNDWTPVRALGAYIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 455
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRVI + WTLFSP D PDL
Sbjct: 456 YLETWHMDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVINEEDWTLFSPNDAPDL 515
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE++Y+ YE +T+ G++KLFK++ A+ LWRK+LSMLFETGHPW TFKD CN+R
Sbjct: 516 HDLYGEAFEKAYLEYEAKTRSGELKLFKRLPAINLWRKMLSMLFETGHPWFTFKDPCNLR 575
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT++ EI VCNLGS+NL H+ LD KL+ TI A+R
Sbjct: 576 SPQQHVGVVHSSNLCTEITLNTNQEEIAVCNLGSVNLAQHVDENGLDIEKLQGTINTAVR 635
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN++HRPVGLGIMGFQD L+ I Y+S +A+ FAD SME +
Sbjct: 636 MLDNVIDINYYSVPQAERSNMKHRPVGLGIMGFQDALYKQGISYASSDAVTFADNSMEAV 695
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LAEE+G Y ++DGSLW QG+LP DS+++L +RG Y KV+ S++L+W
Sbjct: 696 SYYAIQASAKLAEERGAYQTFDGSLWSQGVLPIDSIEILVNQRGEDYCKVDRSQTLDWDS 755
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R KK GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 756 VRAMAKK-GMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVS 814
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
LK++GLWD M+ +LKY+DG+ I RIP DL++ + TAFE+ P W++EA S RQKWID
Sbjct: 815 ALKERGLWDNVMVNDLKYYDGSAQPIERIPADLKEQFRTAFEVEPRWLVEAASRRQKWID 874
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+ +GKKLD TYK+AWL GLKTTYYLR+I A +KS G L+ +
Sbjct: 875 QAQSLNLYIAEANGKKLDVTYKMAWLLGLKTTYYLRAIGATQTEKSTINDG----KLNRV 930
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S K + E ++D +CE+CQ
Sbjct: 931 SSK-VEEPAAEFGQAADVPQACSLDDP-DCEACQ 962
>gi|52842001|ref|YP_095800.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|296107365|ref|YP_003619065.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
pneumophila 2300/99 Alcoy]
gi|378777635|ref|YP_005186073.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
pneumophila subsp. pneumophila ATCC 43290]
gi|52629112|gb|AAU27853.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|295649266|gb|ADG25113.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
pneumophila 2300/99 Alcoy]
gi|307610474|emb|CBX00046.1| hypothetical protein LPW_18011 [Legionella pneumophila 130b]
gi|364508450|gb|AEW51974.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
pneumophila subsp. pneumophila ATCC 43290]
Length = 942
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/760 (61%), Positives = 592/760 (77%), Gaps = 35/760 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK----------EIKQIDIPIKYKEYFSKFINKGID 50
+EK+P Y+ V+ARLL+ ++ E K E+ QI Y YF +I +GI
Sbjct: 207 VEKEPNYTYVSARLLLDSLRSEALTKLNIKSEATFDEMAQI-----YPVYFKSYIEQGIA 261
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+L+PK+A+F+L LS ALLPERD++F YL L+ LYDRYF+H G+R E+PQ FFMR+A
Sbjct: 262 QGMLDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVA 321
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
MGL+L E ++E+ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPD L GI+
Sbjct: 322 MGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYS 381
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
+IK+NALLSKYAGGLGNDWT VR++G+ IKGTNG+SQGV+PFL V + AVAVNQGGKRK
Sbjct: 382 AIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRK 441
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA+CAYLE WH D+EEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKRV + WTLFSP
Sbjct: 442 GAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPD 501
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+VPDLH+++GK FE Y+ YE + + G I+ K ISA+ LWR++LSMLFETGHPW+TFKD
Sbjct: 502 EVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKD 561
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
CN+RSPQQH G+IHSSNLCTEITLNTS+ EI VCNLGSINL H+KNGKLD KLK+TI
Sbjct: 562 PCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTI 621
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
A+RMLDNVIDINYY+V +A+ SNL+HRP+GLGIMGFQD L+ +K+ Y+SKEAI+FAD
Sbjct: 622 STAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADS 681
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
SME+I YYA AS +LA+E+G YS+Y+GSLW +GILP DS+ LL++ R +KYL+ + S+
Sbjct: 682 SMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSR-NKYLEQDRSQK 740
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
L+W+ LR +++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N
Sbjct: 741 LDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVN 800
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV +LK LWDE M+ +LKYF+G++ ISRIPD+L++ YAT+FEI P W++EA S R
Sbjct: 801 PYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRR 860
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDS 709
QKWIDQ+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS G +++
Sbjct: 861 QKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTVTDGALNA 920
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
V L + K C I +CE+CQ
Sbjct: 921 VKLIDTEPKA-------------CSITDP-----DCEACQ 942
>gi|335042801|ref|ZP_08535828.1| ribonucleotide reductase, alpha subunit [Methylophaga
aminisulfidivorans MP]
gi|333789415|gb|EGL55297.1| ribonucleotide reductase, alpha subunit [Methylophaga
aminisulfidivorans MP]
Length = 1009
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/709 (63%), Positives = 577/709 (81%), Gaps = 8/709 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EKDP YS + ARLLM I++E K+ Q ++ Y +YF +I+ I+ +L+
Sbjct: 242 IEKDPAYSTLAARLLMDGIRREALSFVYKTPKQASQNEMGDLYADYFKTYISTAIEKELI 301
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L F+L L NAL PE D +F YLGL+ LYDRYF+H +G R E+PQ F+MR+AMGL+
Sbjct: 302 DSELGLFDLDRLGNALKPELDFEFTYLGLQTLYDRYFIHFDGTRFELPQAFYMRVAMGLA 361
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE NRE+ AI+FYNLLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GI+ ++++
Sbjct: 362 INELNREERAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLSGIYNAMRD 421
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT+VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 422 NALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 481
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV ++ WTLFSP +V D
Sbjct: 482 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVAEEGQWTLFSPEEVED 541
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G +FE +Y YE + G I+ FK++ A LWRK+L MLFETGHPWITFKD CN+
Sbjct: 542 LHDLTGLDFERAYEAYEEKAARGDIRNFKQLPATDLWRKMLGMLFETGHPWITFKDPCNL 601
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
RSPQQHVG++HSSNLCTEITLNTS EI VCNLGS+N+ H+ +NGKLD KL+KT+R A
Sbjct: 602 RSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNMVKHIDENGKLDKEKLQKTVRTA 661
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVI+ NYY+V +A++SNL+HRPVGLG+MGFQD L+ ++IPYSS EA++FAD+SME
Sbjct: 662 MRMLDNVIEYNYYSVPQARHSNLQHRPVGLGLMGFQDALYKLRIPYSSDEAVQFADESME 721
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I YYA AS++LA E+G+Y +Y+GSLW +GILP DS+KLL++ RG +YL+ + S++++W
Sbjct: 722 AISYYAIEASSDLAAERGKYQTYEGSLWSKGILPIDSIKLLKEARG-EYLQQDESKTMDW 780
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR++IK+ GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN Y+
Sbjct: 781 DMLRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYM 840
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK + LWD+ MI +LKYFDG+L I RIP +L+ +Y TAFE+ W+IEA S RQKW
Sbjct: 841 VEDLKARNLWDDVMINDLKYFDGSLQGIDRIPAELKSLYTTAFEMDARWLIEAASRRQKW 900
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
+DQ+QSLN+Y++ SGKK+D YKLAW+RGLKTTYYLRS+ A A+K++
Sbjct: 901 LDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGATGAEKTS 949
>gi|209885873|ref|YP_002289729.1| ribonucleotide-diphosphate reductase subunit alpha [Oligotropha
carboxidovorans OM5]
gi|337740549|ref|YP_004632277.1| ribonucleoside-diphosphate reductase subunit alpha NrdA
[Oligotropha carboxidovorans OM5]
gi|386029566|ref|YP_005950341.1| ribonucleoside-diphosphate reductase alpha subunit NrdA
[Oligotropha carboxidovorans OM4]
gi|209874069|gb|ACI93865.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha
carboxidovorans OM5]
gi|336094634|gb|AEI02460.1| ribonucleoside-diphosphate reductase alpha subunit NrdA
[Oligotropha carboxidovorans OM4]
gi|336098213|gb|AEI06036.1| ribonucleoside-diphosphate reductase alpha subunit NrdA
[Oligotropha carboxidovorans OM5]
Length = 969
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/764 (59%), Positives = 583/764 (76%), Gaps = 22/764 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P Y+ V+ARLL+ ++ EV Q D+ +Y EYF ++ GI+ +LL
Sbjct: 213 VEHEPNYAYVSARLLLDKLRSEVLTYLYKTPTSASQADMATRYAEYFPVYVKAGIEAELL 272
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L F+L L++AL PERDLQF +LGL+ LYDRYFLH+ G R+E+PQ FFMR+AMGL+
Sbjct: 273 DPELGRFDLDRLASALKPERDLQFQFLGLQTLYDRYFLHVGGSRLELPQAFFMRVAMGLA 332
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+++K+
Sbjct: 333 VREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADDLDGIFKAVKD 392
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 393 NALLAKYSGGLGNDWTNVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 452
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + TWTLFSP + PD
Sbjct: 453 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEEDGTWTLFSPDETPD 512
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F+ +Y YE + G+I +FK++ A LWR++L+MLFETGHPWITFKDACN+
Sbjct: 513 LHDLYGPAFKAAYEGYEAKAARGEIHVFKEMRATDLWRRMLTMLFETGHPWITFKDACNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS +E+ VCNLGSINL H L+ KLK+TI A+
Sbjct: 573 RSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREGLNHDKLKRTIATAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNL+HRPVGLG+MGFQD LHI +IP +S A+ FAD+SME+
Sbjct: 633 RMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHIQRIPITSDAAVAFADESMEI 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS +LA E+GRY S++GSLW QG+LP DS+ +L K R L + S +L+W
Sbjct: 693 ISYHAISASVDLAGERGRYPSFEGSLWSQGMLPIDSVSILAKARNGAPL--DTSATLDWS 750
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATISNI GV+ SIEP Y+NL++KSN+SG+FT +N +LV
Sbjct: 751 GLRERVKTDGMRNSNVMAIAPTATISNICGVTQSIEPAYQNLYVKSNMSGDFTVVNEFLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE M+++LKYFDG++ QI R+PDDL+ +YAT FEI +W+I+A + RQKWI
Sbjct: 811 RDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATVFEIDTSWLIQAAARRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N SGKKLD+ Y+LAW GLKTTYYLRS SA + +KS + +N
Sbjct: 871 DQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKSTLKGTDGKLNAVS 930
Query: 715 ISIKGY---------NKNLQEIKNNKKCLINSEINDVNECESCQ 749
SI N ++ K C I D +CE+CQ
Sbjct: 931 ASIPSAQQHAPIVVPNDTAPDLTGVKACSI-----DNPDCEACQ 969
>gi|387127722|ref|YP_006296327.1| ribonucleotide reductase subunit alpha [Methylophaga sp. JAM1]
gi|386274784|gb|AFI84682.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Methylophaga sp. JAM1]
Length = 955
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/707 (63%), Positives = 577/707 (81%), Gaps = 8/707 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EKDP YS + ARLLM I++E ++ Q ++ +YK+YF +I I+N+L+
Sbjct: 198 IEKDPAYSTLAARLLMDSIRREALSFVYQSPRQASQGEMADQYKDYFKTYIKTAIENELI 257
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L+ ++L L +AL PE D F YLGL+ LYDRYF+H +G R E+PQ F+MR+AMGL+
Sbjct: 258 DSELSLYDLERLGSALKPENDFSFTYLGLQTLYDRYFIHCDGTRFELPQAFYMRVAMGLA 317
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +RE AI+FYNLLSSF+FM STPTLFN+GT+R QLSSCYL+TVPDDL GI+ ++++
Sbjct: 318 INEIDREARAIEFYNLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYSAMRD 377
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT+VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 378 NALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 437
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV ++ WTLFSP +VPD
Sbjct: 438 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVAEEGQWTLFSPEEVPD 497
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G FE++Y YE + G+I+ FK + A LWRK+L MLFETGHPWITFKD CN+
Sbjct: 498 LHDLTGLGFEKAYAEYEEKAARGEIRNFKTMPATDLWRKMLGMLFETGHPWITFKDPCNL 557
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
RSPQQH+G++HSSNLCTEITLNTS EI VCNLGSIN+ H+ NGKLD KL +T++ A
Sbjct: 558 RSPQQHIGVVHSSNLCTEITLNTSDQEIAVCNLGSINMVQHIDANGKLDKEKLNRTVKTA 617
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVI+ NYY+V +A++SNL HRPVGLGIMGFQD L+ ++IPYS++EA+KFAD+SME
Sbjct: 618 MRMLDNVIEYNYYSVPQARHSNLLHRPVGLGIMGFQDALYKLRIPYSTEEAVKFADESME 677
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AS++LA E+G+Y SY+GSLW +GILP DS+K+L++ RG +YL+ + S++++W
Sbjct: 678 AVSYYAIDASSDLAAERGKYKSYEGSLWSKGILPIDSIKILKEARG-EYLQQDESQTMDW 736
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR+++K+ GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN Y+
Sbjct: 737 DALRDKVKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYM 796
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK++GLWD+ MI +LKY+DG+L I R+P +L+ +Y TAFE+ W+IEA S RQKW
Sbjct: 797 VEDLKQRGLWDDVMINDLKYYDGSLQAIDRVPAELKALYTTAFEMDARWLIEAASRRQKW 856
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKK 700
+DQ+QSLN+Y++ SGKK+D YKLAW+RGLKTTYYLRS+ A A+K
Sbjct: 857 LDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGATGAEK 903
>gi|300022336|ref|YP_003754947.1| ribonucleoside-diphosphate reductase subunit alpha [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524157|gb|ADJ22626.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 956
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/755 (60%), Positives = 583/755 (77%), Gaps = 12/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKE----VFGK--EIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P Y+ VTARLLM +++E V G+ E +Q ++ +Y EYF FI KGI LL
Sbjct: 208 IETEPNYTFVTARLLMDKLRREALSFVAGRTDEARQSEMGERYPEYFRAFIAKGIVADLL 267
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA F+L L AL PERD F YLGL+ LYDRYFL GIR E+PQ FFMR+AMGL+
Sbjct: 268 DPELARFDLDRLGGALKPERDGIFQYLGLQTLYDRYFLQTHGIRFELPQAFFMRVAMGLA 327
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE AI+FY+L+S+F+FMCSTPTLFN+GT R QLSSC+L+TVPDDL GIF+SIK+
Sbjct: 328 LREIDREAKAIEFYDLISTFDFMCSTPTLFNAGTPRPQLSSCFLTTVPDDLDGIFKSIKD 387
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT+VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 388 NALLAKYSGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 447
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKN GDDRRRTHDMN A W+PDLFM+RV + WTLFSP + PD
Sbjct: 448 AYLETWHIDIEEFLDLRKNAGDDRRRTHDMNTAHWIPDLFMQRVAEDGQWTLFSPDETPD 507
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F E Y YE + + ++K+ +++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 508 LHDLYGTAFAERYEAYEEKAERMEMKVARRVRAVDLWRRMLTMLFETGHPWITFKDPCNL 567
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH GI+HSSNLC EITLNTS +E+ VCNLGSINL H+ N +D KL++T++ AM
Sbjct: 568 RSPQQHCGIVHSSNLCAEITLNTSNDEVAVCNLGSINLVAHVTNDGVDFDKLERTVKTAM 627
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRPVG+G+MGFQD L ++I Y S+EA+ FAD SME
Sbjct: 628 RMLDNVIDINFYTIPEARRSNLRHRPVGMGLMGFQDALQALRINYGSEEAVAFADTSMEA 687
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A AS +LA E+GRY S+DGSLW QGILP DS++LL+ RG+ L+++ S +L+W
Sbjct: 688 ISFHAISASVDLAAERGRYPSFDGSLWSQGILPIDSIELLKSARGTD-LRLDTSSTLDWD 746
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR+R++ GMRNSN +AIAPTATISNI GV+ SIEP +RNL++KSN+SG+FT +N +LV
Sbjct: 747 GLRDRVRTTGMRNSNTMAIAPTATISNICGVAQSIEPAFRNLYVKSNMSGDFTVVNPFLV 806
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE MI++LKYFDG+L I RIP+DL+ +YATAFEI +W+++A + RQKWI
Sbjct: 807 RDLKARGLWDEVMISDLKYFDGSLGAIDRIPEDLKALYATAFEIDAHWLVDAAARRQKWI 866
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ QSLN+YI+ +G+KLD Y+LAW RGLKTTYYLRS SA + +KS + +N
Sbjct: 867 DQGQSLNLYIAAPNGRKLDALYRLAWERGLKTTYYLRSQSATHVEKSTLKGTDGKLNAVS 926
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S+ E K CLI D CE+CQ
Sbjct: 927 SSVHHSAPENIEAMAGKACLI-----DDPTCEACQ 956
>gi|406916516|gb|EKD55525.1| hypothetical protein ACD_60C00001G0002 [uncultured bacterium]
Length = 938
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/752 (61%), Positives = 589/752 (78%), Gaps = 25/752 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK---YKEYFSKFINKGIDNKLLNPK 57
+EK+P YS V ARLL+ ++ E F + ++I + Y Y + ++ +G + +LL+ K
Sbjct: 209 IEKEPNYSFVAARLLLDNLRDEAF----QFLNIKPEENFYSSYLTAYVERGAELELLDSK 264
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
L ++L L A+ PERDLQFNYLGL+ LYDRYF+H G+R E+PQ FFMR+AMGL+LNE
Sbjct: 265 LQTYDLKKLVKAIRPERDLQFNYLGLQTLYDRYFIHSLGVRFELPQAFFMRVAMGLALNE 324
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
N+E+ AI+FY+LLS+F+FM STPTLFNSGT+R QLSSCYL+TVPDDL GIF +IK+NAL
Sbjct: 325 KNKEERAIEFYHLLSTFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFAAIKDNAL 384
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSKYAGGLGNDWT VR++G+ IKGTNG+S GV+PFL V N AVAVNQGGKRKGA+C YL
Sbjct: 385 LSKYAGGLGNDWTNVRAMGARIKGTNGKSLGVVPFLSVANATAVAVNQGGKRKGAVCGYL 444
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
ETWH DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRVI+++ WTLFSP +VPDLH+
Sbjct: 445 ETWHKDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVIEEAEWTLFSPDEVPDLHD 504
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+ FE +Y YE + G+I FKK+ A+ LWRK+L MLFETGHPWITFKD CN+RSP
Sbjct: 505 TYGEAFENAYTAYEAKAARGEIHNFKKLPAITLWRKMLGMLFETGHPWITFKDVCNLRSP 564
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
QQH G++HSSNLCTEITLNTS +EI VCNLGSINLT HM + L+ KL++TI A+RML
Sbjct: 565 QQHTGVVHSSNLCTEITLNTSLDEIAVCNLGSINLTAHMTDKGLNQEKLRRTIHTAIRML 624
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNVIDINYY+V +A+ SN++HRP+GLG+M FQD L+ + IPY+SKEA++FAD+SME+I Y
Sbjct: 625 DNVIDINYYSVPQARNSNMKHRPIGLGVMAFQDALYQLGIPYASKEAVEFADRSMELISY 684
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
YA AST L+EE+G YS++ GSLW QGILP DS++L+ KER K N S +L+W+ LR
Sbjct: 685 YAIEASTLLSEERGPYSTFHGSLWSQGILPIDSIELIAKERKGYVFKQNRSLTLDWETLR 744
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
R+KK GMRNSN +AIAPTATI+NI GVS SIEPTY+NL +KSNLSGEFT IN YLV +L
Sbjct: 745 KRVKKVGMRNSNVLAIAPTATIANITGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVTDL 804
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
KK+ LWD+ MI +LKY+ G++ +ISRIPD L+K+YATAFE+ P+W++EA S RQKWIDQ+
Sbjct: 805 KKRDLWDDVMINDLKYYHGSVMKISRIPDSLKKLYATAFELDPSWLVEAASRRQKWIDQA 864
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISI 717
QSLN+Y++ SGKKLD+ Y+LAW GLKTTYYLRS A A++S + D+V L+ +
Sbjct: 865 QSLNLYMAEPSGKKLDQLYRLAWEMGLKTTYYLRSSGATNAERSTVQ---DTV-LNAV-- 918
Query: 718 KGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
Q + K CLI CE+CQ
Sbjct: 919 -------QTLAEPKACLITDP-----ACEACQ 938
>gi|329893651|ref|ZP_08269785.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[gamma proteobacterium IMCC3088]
gi|328923578|gb|EGG30890.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[gamma proteobacterium IMCC3088]
Length = 922
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/711 (63%), Positives = 565/711 (79%), Gaps = 5/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P Y+ ARLL ++ E + Q ++ + Y + +I KGI +LL+
Sbjct: 181 IEQEPNYTYAAARLLCDDLRSEALEFLGVTQRATQQEMALYYPQALQAYIAKGIQLELLS 240
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LA+F+++ L A+ PERDLQF YLGL+ LYDRYF+H R E+PQ FFMRIAMGL++
Sbjct: 241 PELADFDIARLGAAIQPERDLQFTYLGLQTLYDRYFIHSNETRFELPQVFFMRIAMGLAV 300
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++ AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I++N
Sbjct: 301 REDDKNARAIEFYQLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIRDN 360
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 361 ALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 420
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP D PDL
Sbjct: 421 YLETWHLDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVFEGGEWTLFSPNDTPDL 480
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G +FE Y YE QT+ G++KLFK++ A LWRK+L MLFETGHPWITFKD CN+R
Sbjct: 481 HDSYGADFEAKYEAYEAQTRSGELKLFKRVKAENLWRKMLGMLFETGHPWITFKDPCNLR 540
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQ HVG++HSSNLCTEITLNTS EI VCNLGS+NL H+ L+ KL+KT+ A+R
Sbjct: 541 SPQSHVGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLPQHIDENGLNLEKLQKTVTTAVR 600
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SN RHRPVGLG+MGFQD L+ I YSS EA++FAD+SME I
Sbjct: 601 MLDNVIDINYYSVPQAERSNFRHRPVGLGLMGFQDALYKQHIAYSSPEAVEFADRSMEAI 660
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS+ LAEE+G YSS++GSLW QGILP DSL+ L + RG +YL+++ +++L+W
Sbjct: 661 SYYAIQASSALAEERGTYSSFEGSLWSQGILPIDSLERLAESRGDQYLQIDRTQTLDWDT 720
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 721 LRERVRAKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 780
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK + LWD+ M+ +LKY+DG+ I RIP DL+ IY+TAFE+ P WI+EA S RQKWID
Sbjct: 781 DLKARNLWDKVMVNDLKYYDGSAQAIDRIPADLKAIYSTAFEVEPRWIVEAASRRQKWID 840
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+N SGKKLD TY++AWL GLKTTYYLRS++A +KS + G
Sbjct: 841 QAQSLNLYINNASGKKLDVTYRMAWLSGLKTTYYLRSLAATGTEKSTVDKG 891
>gi|410447392|ref|ZP_11301488.1| ribonucleoside-diphosphate reductase, alpha subunit [SAR86 cluster
bacterium SAR86E]
gi|409979667|gb|EKO36425.1| ribonucleoside-diphosphate reductase, alpha subunit [SAR86 cluster
bacterium SAR86E]
Length = 964
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/754 (61%), Positives = 590/754 (78%), Gaps = 8/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTAR+L+ ++ E +E ++ Y + F +I KGI+ ++L+
Sbjct: 214 VEQEPNYSYVTARILLDELRSEALSFLDIAEESSHPEMQEYYPKAFQAYIEKGIELQMLD 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L +F+L+ L NA+ +RD QF YLGL+ LYDRYF+H + R E+PQ FFMR+AMGL++
Sbjct: 274 PILKDFDLNKLGNAIDHDRDYQFTYLGLQTLYDRYFIHYQDTRYELPQIFFMRVAMGLAV 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+T+PDDL GIF ++K+N
Sbjct: 334 EEDNREDRAIEFYKLLSSFDYMSSTPTLFNSGTLRPQLSSCYLTTIPDDLDGIFGAMKDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDW+ VR+LGS IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 394 ALLSKWAGGLGNDWSPVRALGSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLFSP + PDL
Sbjct: 454 YLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVELGANWTLFSPGEAPDL 513
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G FE+ Y YE GK+ K I A LWRK+L+MLFETGHPWITFKD+CN+R
Sbjct: 514 HDLTGLAFEKRYEEYEALAAEGKMDQHKTIPAKDLWRKMLTMLFETGHPWITFKDSCNLR 573
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH+G+IHSSNLCTEITLNTS +EI VCNLGS+NL HMK+G LD K+K+T+ A+R
Sbjct: 574 SPQQHIGVIHSSNLCTEITLNTSNDEIAVCNLGSVNLPQHMKDGTLDQEKVKRTVTTALR 633
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V AK SNL+HRPVG+G+MGFQD L++ PY S AI+FADQSME+I
Sbjct: 634 MLDNVIDINYYSVDTAKNSNLKHRPVGMGLMGFQDALYMQNAPYCSDAAIEFADQSMEVI 693
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA +AS+ELA+E+G Y SY+GSLW QGI P+DS+ +LEK RGS+++KV+ SE+L+W K
Sbjct: 694 SYYAIHASSELAKERGTYPSYEGSLWSQGIFPKDSIDILEKNRGSEFIKVDRSETLDWDK 753
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
L+ ++KK GMRNSN +AIAPTATISNI GV+ SIEPTY+NL++KSNLSGEFT +N +LV+
Sbjct: 754 LKAKVKKDGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGEFTIVNPHLVR 813
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK LWD+ MI +LKYF+G+LS+ISRIPDD++K+++TAFE+ P +I+E+ S RQKWID
Sbjct: 814 KLKALNLWDDVMINDLKYFEGSLSEISRIPDDIKKLFSTAFEVEPQYIVESASRRQKWID 873
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI N +GKKLD TY++AW GLKTTYYLRSI+A +KS G S+N
Sbjct: 874 QAQSLNLYIGNANGKKLDLTYRMAWYSGLKTTYYLRSIAATTTEKSTINQG--SLNAVSA 931
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + E+ ++D + CE+CQ
Sbjct: 932 QAEPTPEVPHELGAPAPVPEACSLDDPD-CEACQ 964
>gi|88705572|ref|ZP_01103282.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
litoralis KT71]
gi|88700085|gb|EAQ97194.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
litoralis KT71]
Length = 969
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/754 (60%), Positives = 574/754 (76%), Gaps = 17/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P Y+ +ARLL ++ E Q D+ Y + +I +G++ +LL+
Sbjct: 228 IEQEPNYTYASARLLCDNLRTEALSFLGVADSATQGDMDRLYAKALPAYIARGVELELLD 287
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAE++L + A+LPERDLQF YLGL+ LYDRYF+H + +R E+PQ FFMR+AMGL++
Sbjct: 288 PTLAEYDLERMGKAILPERDLQFTYLGLQTLYDRYFIHSDEVRFELPQIFFMRVAMGLAV 347
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E++RE AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 348 EETDREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 407
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C+
Sbjct: 408 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCS 467
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP DVPDL
Sbjct: 468 YLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFSPNDVPDL 527
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK FEE Y YE G++K K + A LWRK+L MLFETGHPW+TFKD CN+R
Sbjct: 528 HDLYGKAFEERYCAYEAMAATGELKYSKTVKAQNLWRKMLGMLFETGHPWMTFKDPCNLR 587
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS +EI VCNLGSINL H+ L+ KL +T+R A+R
Sbjct: 588 SPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHVDENGLNLEKLAETVRTAVR 647
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V A+ SN RHRPVGLG+MGFQD L+ I Y S++A+ FAD+SME I
Sbjct: 648 MLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQHIAYGSEDAVTFADRSMEAI 707
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS++LAEE+G Y SY+GSLW QGILP DSL L +ERGS Y+KV+ S +++W
Sbjct: 708 SYYAIDASSKLAEERGAYESYEGSLWSQGILPIDSLGKLVEERGSDYIKVDDSMTMDWTS 767
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR +K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 768 LREAVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 827
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ I RIP DLR IY+ AFE+ P WI+E S RQKWID
Sbjct: 828 DLKVRGLWDSVMVNDLKYYDGSVQAIERIPADLRAIYSNAFEVEPRWIVECASRRQKWID 887
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+YI+N SGKKLD TY++AW GLKTTYYLRS++A +KS ID+ L+ +
Sbjct: 888 QAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKST----IDTGQLNAV 943
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + C + D +CE+CQ
Sbjct: 944 SSE---SAPAPAPVPMACSL-----DDPDCEACQ 969
>gi|414168812|ref|ZP_11424775.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia
clevelandensis ATCC 49720]
gi|410887548|gb|EKS35358.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia
clevelandensis ATCC 49720]
Length = 968
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/714 (61%), Positives = 571/714 (79%), Gaps = 9/714 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V++RLL+ ++ EV Q ++ +Y EYF+ ++ GI +LL
Sbjct: 213 VEQEPNYSYVSSRLLLDKLRGEVLSFVHATPMTATQAEMATRYAEYFAAYVKVGIQAELL 272
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L+ F+L+ L+ AL PERDLQF +LGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+
Sbjct: 273 DPELSRFDLARLAAALKPERDLQFQFLGLQTLYDRYFLHVRNRRIELPQAFFMRVAMGLA 332
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+SIK+
Sbjct: 333 MREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADDLDGIFKSIKD 392
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 393 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 452
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + W+LFSP + PD
Sbjct: 453 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQDGEWSLFSPDETPD 512
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G +F+ +Y YE + G++++FK++ A LWR++L+MLFETGHPWITFKD CN+
Sbjct: 513 LHDLYGPKFKTAYEAYEAKADRGEMRVFKRVRATDLWRRMLTMLFETGHPWITFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNTS +E+ VCNLGS+NL H +D KLK+T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSVNLLNHTTGSGIDHDKLKRTVTTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNV+DIN+Y + +A+ SNLRHRPVGLG+MGFQD LH +IP ++++A+ FAD+SME
Sbjct: 633 RMLDNVVDINFYTIPEARRSNLRHRPVGLGLMGFQDALHAQRIPVATEKAVAFADESMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS +LA E+GRY S+DGSLW +GILP DS+ +L RG + S +L+W
Sbjct: 693 ISYHAISASVDLAAERGRYPSFDGSLWSRGILPIDSIAILSDARGGATF--DTSTTLDWS 750
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+++ GMRNSN +AIAPTATISNI GV+ SIEP Y+NL++KSN+SG+FTE+N +LV
Sbjct: 751 SLRERVRETGMRNSNVMAIAPTATISNICGVAQSIEPAYQNLYVKSNMSGDFTEVNEFLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE M+++LKYFDG++ QI R+PDDL+ +YATAFEI W+IEA + RQKWI
Sbjct: 811 RDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDTAWLIEAAARRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
DQ+QSLN+YI+N SGKKLD+ Y+LAW GLKTTYYLRS SA + +KS + G D
Sbjct: 871 DQAQSLNLYIANPSGKKLDQLYRLAWSLGLKTTYYLRSRSATHVEKSTLK-GTD 923
>gi|365857691|ref|ZP_09397679.1| ribonucleoside-diphosphate reductase, alpha subunit
[Acetobacteraceae bacterium AT-5844]
gi|363715878|gb|EHL99300.1| ribonucleoside-diphosphate reductase, alpha subunit
[Acetobacteraceae bacterium AT-5844]
Length = 947
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/755 (58%), Positives = 589/755 (78%), Gaps = 14/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P Y+ V+ARLL+ ++E G Q ++ Y +YF+ ++ KGI+ +LLN
Sbjct: 201 IEQEPNYAYVSARLLLAVARREATGFVQGIAVQTQAEMATAYPDYFTAYVGKGIEAQLLN 260
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LA F+L+ L AL PERDLQF YLG + LYDRY L +G+R EMPQ FFMR+AMGL+L
Sbjct: 261 PELARFDLARLGAALKPERDLQFQYLGFQTLYDRYLLQTQGVRFEMPQAFFMRVAMGLAL 320
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE +RE+ AI+FY+L+SSF+FMCSTPTLFNSGT SQLSSC+L++VPDDL GIF +IK+N
Sbjct: 321 NEIDREERAIEFYDLISSFDFMCSTPTLFNSGTRHSQLSSCFLTSVPDDLDGIFGAIKDN 380
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALL+KY+GG+GN WT+VR LG+ I+GTNG+SQGV+PFLKV ND A+AVNQGGKRKGA+CA
Sbjct: 381 ALLAKYSGGIGNSWTRVRGLGAHIRGTNGQSQGVVPFLKVANDTAIAVNQGGKRKGAVCA 440
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+D+EEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV WTLFSP +VPDL
Sbjct: 441 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEADGEWTLFSPDEVPDL 500
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
HN +G F+E+Y YE + K G+IK+ K + A+ LWR++L+MLFETGHPW+TFKD CN+R
Sbjct: 501 HNLYGIPFKEAYERYEAKAKAGEIKVHKTVRAVDLWRRMLTMLFETGHPWMTFKDPCNLR 560
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQ+H G++HSSNLCTEITLNTS +E+ VCNLGSINL H+ LD +L +T+R AMR
Sbjct: 561 SPQRHAGVVHSSNLCTEITLNTSDSEVAVCNLGSINLGRHVTEKGLDRERLARTVRTAMR 620
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVID+N+Y + +A+ SNLRHRP+G+G+MGFQD LH +++P +S+EA++FAD+SME+I
Sbjct: 621 MLDNVIDVNFYTIPQARRSNLRHRPIGMGLMGFQDALHALRLPLASEEAVRFADESMEVI 680
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA E+G Y+S+ GSLW QG+LP DS++ + + RG ++ S +++W+
Sbjct: 681 SYYAIEASVDLAAERGAYASFQGSLWSQGVLPVDSIRYVAEARGE---TLDQSTTMDWES 737
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R+K GMRNSN +AIAPTATISNI+G + SIEPT+RNL++K+N+SG+FT +N LV
Sbjct: 738 LRERVKTIGMRNSNTMAIAPTATISNIVGATQSIEPTFRNLYVKANMSGDFTVVNPALVA 797
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+++LKY+DG+L I RIPDDL+ +YATAFE+ +W++EA + RQKWID
Sbjct: 798 DLKARGLWDAVMVSDLKYYDGSLGPIDRIPDDLKDLYATAFEVDASWLVEAAARRQKWID 857
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+Y++N +G+KLD Y+LAW RGLKTTYYLR+ SA + +KS + +N ++
Sbjct: 858 QAQSLNLYLANPNGRKLDALYRLAWKRGLKTTYYLRTQSATHVEKSTLKKSDGKLNAVKV 917
Query: 716 SIKGYNK-NLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + + K C++ D CE+CQ
Sbjct: 918 APQPESAFEATPLDAPKVCML-----DDPTCEACQ 947
>gi|254492424|ref|ZP_05105596.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Methylophaga thiooxidans DMS010]
gi|224462316|gb|EEF78593.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Methylophaga thiooxydans DMS010]
Length = 976
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/709 (63%), Positives = 575/709 (81%), Gaps = 8/709 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EKDP YS + ARLLM I++E K+ Q ++ Y +YF +I+ I+ +L+
Sbjct: 200 IEKDPAYSTLAARLLMDGIRREALSFVFKMPKQAAQNEMVDIYPDYFKSYIHTAIEKELV 259
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L F+L L AL PE D F YLGL+ LYDRYF+H +G R E+PQ F+MR+AMGL+
Sbjct: 260 DSELGLFDLDRLGKALKPELDFDFTYLGLQTLYDRYFIHYDGTRFELPQAFYMRVAMGLA 319
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE NRE+ AI+FYNLLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GI+ ++++
Sbjct: 320 INELNREERAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLSGIYNAMRD 379
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT+VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 380 NALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 439
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF+++RKNTGDDRRRTHDMN A W+PD+FMKRV ++ WTLFSP +V D
Sbjct: 440 AYLETWHIDIEEFLDMRKNTGDDRRRTHDMNTANWIPDMFMKRVAEEGQWTLFSPEEVDD 499
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G FE++Y YE + G+I+ FK++ A LWRK+L MLFETGHPW+TFKD CN+
Sbjct: 500 LHDLTGLAFEKAYTEYEEKAARGEIRNFKQLPATDLWRKMLGMLFETGHPWVTFKDPCNL 559
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
RSPQQHVG++HSSNLCTEITLNTS EI VCNLGS+N+ H+ +NGKLD KL+KT+R A
Sbjct: 560 RSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNMVKHIDENGKLDTQKLQKTVRTA 619
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVI+ NYY+V +A+ SNL HRPVGLGIMGFQD L+ +++PYSS+E +KFAD+SME
Sbjct: 620 MRMLDNVIEYNYYSVPQARNSNLLHRPVGLGIMGFQDALYKLRLPYSSEETVKFADESME 679
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AS++LA E+G+Y SY+GSLW +GILP DS+KLL++ RG +YL+ + S++++W
Sbjct: 680 AVSYYAIEASSDLAAERGKYQSYEGSLWSKGILPIDSIKLLQEARG-EYLQQDDSQTMDW 738
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR++IK+ GMRNSN +AIAPTATISNI GVS SIEPTY+N+ +KSNLSGEFT IN Y+
Sbjct: 739 DALRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNIFVKSNLSGEFTVINPYM 798
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK + LWDE MI +LKYFDG+L I RIPD+L+ +Y TAFE+ W+IEA S RQKW
Sbjct: 799 VEDLKARDLWDEVMINDLKYFDGSLQSIDRIPDELKALYTTAFEMDARWLIEAASRRQKW 858
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
IDQ+QSLN+Y++ SGKK+D YKLAW+RGLKTTYYLRS+ A A+K++
Sbjct: 859 IDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGATGAEKTS 907
>gi|338972084|ref|ZP_08627463.1| ribonucleotide reductase of class 1a (aerobic), alpha subunit
[Bradyrhizobiaceae bacterium SG-6C]
gi|338234978|gb|EGP10089.1| ribonucleotide reductase of class 1a (aerobic), alpha subunit
[Bradyrhizobiaceae bacterium SG-6C]
Length = 968
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/714 (61%), Positives = 571/714 (79%), Gaps = 9/714 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V++RLL+ ++ EV Q ++ +Y EYF+ ++ GI +LL
Sbjct: 213 VEQEPNYSYVSSRLLLDKLRGEVLSFVHGSPTTATQAEMATRYAEYFAAYVKVGIQAELL 272
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L+ F+L+ L+ AL PERDLQF +LGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+
Sbjct: 273 DPELSRFDLARLAAALKPERDLQFQFLGLQTLYDRYFLHVRNRRIELPQAFFMRVAMGLA 332
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+SIK+
Sbjct: 333 MREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADDLDGIFKSIKD 392
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 393 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 452
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + W+LFSP + PD
Sbjct: 453 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQDGEWSLFSPDETPD 512
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G +F+ +Y YE + G++++FK++ A LWR++L+MLFETGHPWITFKD CN+
Sbjct: 513 LHDLYGPKFKTAYEAYEAKADRGEMRVFKRVRATDLWRRMLTMLFETGHPWITFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNTS +E+ VCNLGS+NL H +D KLK+T+ A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSVNLLNHTTGSGIDHDKLKRTVTTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNV+DIN+Y + +A+ SNLRHRPVGLG+MGFQD LH +IP ++++A+ FAD+SME
Sbjct: 633 RMLDNVVDINFYTIPEARRSNLRHRPVGLGLMGFQDALHAQRIPVATEKAVAFADESMEA 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS +LA E+GRY S+DGSLW +GILP DS+ +L RG + S +L+W
Sbjct: 693 ISYHAISASVDLAAERGRYPSFDGSLWSRGILPIDSIAILSDARGGATF--DTSTTLDWS 750
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+++ GMRNSN +AIAPTATISNI GV+ SIEP Y+NL++KSN+SG+FTE+N +LV
Sbjct: 751 SLRERVRETGMRNSNVMAIAPTATISNICGVAQSIEPAYQNLYVKSNMSGDFTEVNEFLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE M+++LKYFDG++ QI R+PDDL+ +YATAFEI W+IEA + RQKWI
Sbjct: 811 RDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDTAWLIEAAARRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
DQ+QSLN+YI+N SGKKLD+ Y+LAW GLKTTYYLRS SA + +KS + G D
Sbjct: 871 DQAQSLNLYIANPSGKKLDQLYRLAWSLGLKTTYYLRSRSATHVEKSTLK-GTD 923
>gi|54297687|ref|YP_124056.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
pneumophila str. Paris]
gi|53751472|emb|CAH12890.1| hypothetical protein lpp1738 [Legionella pneumophila str. Paris]
Length = 942
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/760 (61%), Positives = 592/760 (77%), Gaps = 35/760 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK----------EIKQIDIPIKYKEYFSKFINKGID 50
+EK+P Y+ V+ARLL+ ++ E K E+ QI Y YF +I +GI
Sbjct: 207 VEKEPNYTYVSARLLLDSLRSEALTKLNIKSEATFDEMAQI-----YPVYFKSYIEQGIA 261
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+L+PK+A+F+L LS ALLPERD++F YL L+ LYDRYF+H G+R E+PQ FFMR+A
Sbjct: 262 QGMLDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVA 321
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
MGL+L E ++E+ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPD L GI+
Sbjct: 322 MGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYS 381
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
+IK+NALLSKYAGGLGNDWT VR++G+ IKGTNG+SQGV+PFL V + AVAVNQGGKRK
Sbjct: 382 AIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRK 441
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA+CAYLE WH D+EEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKRV + WTLFSP
Sbjct: 442 GAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPD 501
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+VPDLH+++GK FE Y+ YE + + G I+ K ISA+ LWR++LSMLFETGHPW+TFKD
Sbjct: 502 EVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKD 561
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
CN+RSPQQH G+IHSSNLCTEITLNTS+ EI VCNLGS+NL H+KNGKLD KLK+TI
Sbjct: 562 PCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSVNLPAHIKNGKLDEQKLKRTI 621
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
A+RMLDNVIDINYY+V +A+ SNL+HRP+GLGIMGFQD L+ +K+ Y+SKEAI+FAD
Sbjct: 622 STAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADS 681
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
SME+I YYA AS +LA+E+G YS+Y+GSLW +GILP DS+ LL++ R +KYL+ + S+
Sbjct: 682 SMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSR-NKYLEQDRSQK 740
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
L+W+ LR +++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N
Sbjct: 741 LDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVN 800
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV +LK LWDE M+ +LKYF+G++ ISRIP++L++ YAT+FEI P W++EA S R
Sbjct: 801 PYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRR 860
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDS 709
QKWIDQ+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS G +++
Sbjct: 861 QKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTVTDGALNA 920
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
V L + K C I +CE+CQ
Sbjct: 921 VKLIDTEPKA-------------CSITDP-----DCEACQ 942
>gi|431930595|ref|YP_007243641.1| ribonucleoside-diphosphate reductase subunit alpha [Thioflavicoccus
mobilis 8321]
gi|431828898|gb|AGA90011.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thioflavicoccus mobilis 8321]
Length = 975
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/766 (59%), Positives = 581/766 (75%), Gaps = 24/766 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK-EIK-----QIDIPIKYKEYFSKFINKGIDNKLL 54
+E+DP YSQV ARLL+ +++E G E+ Q D+ Y +YF+ ++ +G + +LL
Sbjct: 217 IEQDPQYSQVAARLLLDSLRREALGALEMAAGVETQADLAGCYGDYFAAYVRRGAELELL 276
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGL 113
+ +L +F+L L AL PERDL+F YLGL+ LYDRYF+H G R+E+PQ FFMR+AMGL
Sbjct: 277 DWRLTQFDLDRLGAALRPERDLEFTYLGLQTLYDRYFIHTTNGARLELPQAFFMRVAMGL 336
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++ E RE+ AI+FY LLSSF FM STPTLFNSGT+R QLSSCYL+TVPDDL GI+ +IK
Sbjct: 337 AIEEIEREEQAIEFYELLSSFAFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIYGAIK 396
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGV+PF+KV ND AVAVNQGGKRKGA+
Sbjct: 397 DNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFMKVANDTAVAVNQGGKRKGAV 456
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
C YLETWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLFSP + P
Sbjct: 457 CGYLETWHIDMEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVAEDGGWTLFSPDEAP 516
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
DLH+ G FE +Y+ YE + + G++K+ K++ A+ LWRK+L+MLFETGHPWI FKD CN
Sbjct: 517 DLHDLVGAAFEAAYLGYEARAERGELKVVKRVKAVDLWRKMLAMLFETGHPWIAFKDPCN 576
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+R QHVG++HSSNLCTEITL+T+ EI VCNLGS+NL H+ +G LD +L T+R A
Sbjct: 577 LRYTNQHVGVVHSSNLCTEITLHTNDQEIAVCNLGSVNLAAHVTDGDLDTERLAGTVRTA 636
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVIDIN+Y V +A+ +NLRHRPVGLG+MGFQD LH ++IPY S+ A+ FAD SME
Sbjct: 637 MRMLDNVIDINFYNVPQARRANLRHRPVGLGLMGFQDALHRLRIPYGSEAAVAFADTSME 696
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ Y+A ASTELA E+G Y S+ GSLW +GILP DS+++LE+ RG YL+++ + L+W
Sbjct: 697 ALSYFAIEASTELAAERGAYPSFAGSLWSRGILPIDSIRVLEEGRGG-YLQMDTTSRLDW 755
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR R++ G+RNSNC+AIAPTATISNI+GV SIEPTY+NL +KSNLSGEFT +N YL
Sbjct: 756 DALRERVRTVGIRNSNCLAIAPTATISNIVGVGQSIEPTYQNLFVKSNLSGEFTVVNPYL 815
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK +GLWD M+ +LKY+DG++ I RIP DL+ +YA AFEI P W++EA S RQKW
Sbjct: 816 VADLKARGLWDAVMVNDLKYYDGSVQPIDRIPGDLKALYANAFEIDPRWLVEAASRRQKW 875
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF---------- 703
+DQSQSLN+Y+S +GKKLD YKLAW+RGLKTTYYLRS+ A + +KS
Sbjct: 876 LDQSQSLNLYMSEPNGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTMADAAKANRLS 935
Query: 704 EMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+G +LD+ + G E + +++ ECESCQ
Sbjct: 936 AIGGSYTSLDKTKVHGKGNGHDEPEAQACSILDP------ECESCQ 975
>gi|397664228|ref|YP_006505766.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Legionella pneumophila subsp. pneumophila]
gi|395127639|emb|CCD05838.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Legionella pneumophila subsp. pneumophila]
Length = 942
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/760 (61%), Positives = 591/760 (77%), Gaps = 35/760 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK----------EIKQIDIPIKYKEYFSKFINKGID 50
+EK+P Y+ V+ARLL+ ++ E K E+ QI Y YF +I +GI
Sbjct: 207 VEKEPNYTYVSARLLLDSLRSEALTKLNIKSEATFDEMAQI-----YPVYFKSYIEQGIA 261
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+L+PK+ +F+L LS ALLPERD++F YL L+ LYDRYF+H G+R E+PQ FFMR+A
Sbjct: 262 QGMLDPKMTDFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVA 321
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
MGL+L E ++E+ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPD L GI+
Sbjct: 322 MGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYS 381
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
+IK+NALLSKYAGGLGNDWT VR++G+ IKGTNG+SQGV+PFL V + AVAVNQGGKRK
Sbjct: 382 AIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRK 441
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA+CAYLE WH D+EEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKRV + WTLFSP
Sbjct: 442 GAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPD 501
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+VPDLH+++GK FE Y+ YE + + G I+ K ISA+ LWR++LSMLFETGHPW+TFKD
Sbjct: 502 EVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKD 561
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
CN+RSPQQH G+IHSSNLCTEITLNTS+ EI VCNLGSINL H+KNGKLD KLK+TI
Sbjct: 562 PCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTI 621
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
A+RMLDNVIDINYY+V +A+ SNL+HRP+GLGIMGFQD L+ +K+ Y+SKEAI+FAD
Sbjct: 622 STAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADS 681
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
SME+I YYA AS +LA+E+G YS+Y+GSLW +GILP DS+ LL++ R +KYL+ + S+
Sbjct: 682 SMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSR-NKYLEQDRSQK 740
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
L+W+ LR +++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N
Sbjct: 741 LDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVN 800
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV +LK LWDE M+ +LKYF+G++ ISRIP++L++ YAT+FEI P W++EA S R
Sbjct: 801 PYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRR 860
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDS 709
QKWIDQ+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS G +++
Sbjct: 861 QKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTVTDGALNA 920
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
V L + K C I +CE+CQ
Sbjct: 921 VKLIDTEPKA-------------CSITDP-----DCEACQ 942
>gi|407697099|ref|YP_006821887.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
dieselolei B5]
gi|407254437|gb|AFT71544.1| Ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
dieselolei B5]
Length = 959
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/706 (63%), Positives = 568/706 (80%), Gaps = 6/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P YS VTARLL+ I+ E + Q ++ Y + F+ +++KGI+ +LLN
Sbjct: 214 IEVEPNYSLVTARLLLDKIRAEALQYLDVAERANQEEMEALYSQTFAAYVHKGIECELLN 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+LA+F+L L AL ERDLQF+YLGL+ LYDRYF+H RIE+PQ FFMR+AMGL++
Sbjct: 274 PELADFDLEKLGAALKGERDLQFSYLGLQTLYDRYFIHHNDTRIELPQCFFMRVAMGLAI 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE+ AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 334 REDNREERAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYSAIHDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV+ + WTLFSP D PDL
Sbjct: 454 YLETWHMDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVVNEQEWTLFSPNDAPDL 513
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+ FE+ Y YE T+ G+I +K++ A+ LWRK+LSMLFETGHPW TFKD CN+R
Sbjct: 514 HDLYGEAFEQRYNEYEEMTRDGRITHYKRLPAINLWRKMLSMLFETGHPWFTFKDPCNLR 573
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNT++ EI VCNLGS+NL H+ + LD KL +T++ A+R
Sbjct: 574 SPQQHVGVVHSSNLCTEITLNTNREEIAVCNLGSVNLAQHIGDNGLDREKLARTVKTAVR 633
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRPVGLGIMGFQD L+ I Y+S +A+ FADQSME +
Sbjct: 634 MLDNVIDINYYSVPQAENSNLKHRPVGLGIMGFQDALYKQGISYASADAVAFADQSMEAV 693
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LAEE+G Y ++DGSLW QG+LP DS+ +L K+RG Y V+ S++L+W
Sbjct: 694 SYYAIQASADLAEERGAYQTFDGSLWSQGVLPIDSIDILVKQRGEDYCTVDRSQTLDWDS 753
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R R ++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 754 VRERARQ-GMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 812
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
LK++GLWD M+ +LKY+DG++ I R+P DL++ + TAFE+ P W++E+ S RQKWID
Sbjct: 813 ALKERGLWDNVMVNDLKYYDGSVQPIERVPADLKERFRTAFEVEPRWLVESASRRQKWID 872
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
Q+QSLN+YI+ +GKKLD TYK+AWL GLKTTYYLR+I A +KS
Sbjct: 873 QAQSLNLYIAEANGKKLDVTYKMAWLLGLKTTYYLRAIGATQTEKS 918
>gi|381156536|ref|ZP_09865775.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiorhodovibrio
sp. 970]
gi|380881873|gb|EIC23958.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiorhodovibrio
sp. 970]
Length = 1019
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/777 (59%), Positives = 579/777 (74%), Gaps = 33/777 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG----------KEIKQI------------DIPIKYK 38
+E++P YSQV ARLL+ ++KE G + Q+ D Y
Sbjct: 248 IEREPAYSQVAARLLLESLRKEALGFLGLPTPTTGRTTGQMADETAAGAACVTDWAQSYA 307
Query: 39 EYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR 98
+YFS ++ +G + +LL+ +L ++L L AL PERD QF YLGL+ LYDRYF+H G+R
Sbjct: 308 KYFSAYVKQGAELELLDTELTRYDLVRLGAALQPERDRQFTYLGLQTLYDRYFIHKNGVR 367
Query: 99 IEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL 158
EMPQ FFMR+AMGL++NE +RE AI+FY LLSSF+FM STPTLFNSGT+R QLSSCYL
Sbjct: 368 FEMPQAFFMRVAMGLAINEIDREARAIEFYELLSSFDFMSSTPTLFNSGTLRPQLSSCYL 427
Query: 159 STVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVND 218
+TVPDDL GI+ +IK+NALLSK+AGGLGNDWTQVR +G+ IKGTNG+SQGV+PFLKV ND
Sbjct: 428 TTVPDDLDGIYGAIKDNALLSKFAGGLGNDWTQVRGMGAHIKGTNGKSQGVVPFLKVAND 487
Query: 219 VAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRV 278
AVAVNQGGKRKGA+CAYLETWH+D+EEF+ELRKNTGDDRRR HDMN A WVPDLFMKRV
Sbjct: 488 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLELRKNTGDDRRRCHDMNSANWVPDLFMKRV 547
Query: 279 IKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSML 338
++ WTLFSP + PDLH+ G+ FE++Y+ YE + G++ + K + A+ LWRK+L+ML
Sbjct: 548 AEEDDWTLFSPNETPDLHDLTGQAFEQAYLAYEARAAAGEMSVSKTVKAVDLWRKMLAML 607
Query: 339 FETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN 398
FETGHPWI FKD CN+R QH G++HSSNLCTEITL+T+ EI VCNLGSINL H+
Sbjct: 608 FETGHPWIAFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDQEIAVCNLGSINLAAHVTE 667
Query: 399 GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458
LD KL+KT R AMRMLDNVID N+Y V +A+ SNLRHRPVGLG+MGFQD L+ +++P
Sbjct: 668 RGLDTEKLQKTARTAMRMLDNVIDYNFYNVPQARSSNLRHRPVGLGLMGFQDALYKLRMP 727
Query: 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518
Y+S+EA+ FAD+SME+I YYA AS +LA E+G Y+S+ GSLW QG+LP DS+ LLE+ R
Sbjct: 728 YTSQEAVSFADRSMELISYYAIEASADLAAERGSYTSFPGSLWSQGVLPIDSIALLEQGR 787
Query: 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHI 578
G YL+ N +L+W LR +++ GMRNSNC+AIAPTATISNI+GVS SIEPTY+NL +
Sbjct: 788 GG-YLQTNRDSTLDWDSLREKVRGQGMRNSNCMAIAPTATISNIVGVSQSIEPTYQNLFV 846
Query: 579 KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI 638
KSNLSGEFT +N YLV +LK GLWD M+ +LKY+DG++ I R+PDDL+ +YATAFEI
Sbjct: 847 KSNLSGEFTVVNPYLVADLKALGLWDSVMVNDLKYYDGSVQPIDRVPDDLKALYATAFEI 906
Query: 639 SPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYA 698
P W+IEA S RQKW+DQ+QSLN+Y+ +GKKLD YKLAW+RGLKTTYYLRS+ A +
Sbjct: 907 DPRWLIEAASRRQKWLDQAQSLNLYMREPNGKKLDNLYKLAWVRGLKTTYYLRSMGATHV 966
Query: 699 KKSNFEMGIDSVNLDEISIKG------YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+KS DS +++S G + L I+D ECESCQ
Sbjct: 967 EKSTMS---DSSRANQLSAVGGSYLAAHGGKPHSDGKGASALSACSIDD-PECESCQ 1019
>gi|340783272|ref|YP_004749879.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha
[Acidithiobacillus caldus SM-1]
gi|340557423|gb|AEK59177.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Acidithiobacillus caldus SM-1]
Length = 945
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/724 (62%), Positives = 567/724 (78%), Gaps = 19/724 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y+ TARLL+ +++EV G+ ++ +Y EYF ++ GI ++LL+P+LA+
Sbjct: 202 IEQDPAYAHATARLLLDRVRREVLGEPATHAEMAQRYPEYFKDYLRTGIQHELLDPRLAQ 261
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L ++ AL PERDL F YLGL+ILYDRYFLH+ RIE+PQ F+MR+AMGL+L E +R
Sbjct: 262 FDLDRIAAALRPERDLDFQYLGLQILYDRYFLHVRERRIELPQAFWMRVAMGLALEEIDR 321
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI FY +LS F F+ STPTLFN+GT+R QLSSC+L+TV DDL GI+E+IK+NALLSK
Sbjct: 322 EEQAIAFYEVLSRFEFVSSTPTLFNAGTLRPQLSSCFLTTVADDLDGIYEAIKDNALLSK 381
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
Y+GGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 382 YSGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 441
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV WTLFSP +V DLH+ G
Sbjct: 442 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVEANGQWTLFSPNEVADLHDLTG 501
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ F+E Y YE G+I LFK++ AL LWRK+L+MLFETGHPWITFKD CN+RSPQQH
Sbjct: 502 QAFKERYEHYERLADAGEITLFKRLPALQLWRKMLTMLFETGHPWITFKDPCNLRSPQQH 561
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----------------KLDP 403
VG++HSSNLCTEITLNTS EI VCNLGS+NL H++ G +D
Sbjct: 562 VGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVAHLRAGLPGQGLRTEASADELLALVDT 621
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
KL +T+R+AMRMLDNVID+NYYAV KA+ SNLRHRPVGLG+MGF D L ++IPY+S+
Sbjct: 622 DKLARTVRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFSDALLALRIPYASQA 681
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A++FAD S E+I Y+A AS +LA E+G Y S+ GSLW QGILP DS++LL + R + +
Sbjct: 682 AVEFADISQELISYHAIDASADLARERGSYRSFPGSLWSQGILPLDSIELLARSRVAG-V 740
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
V+ S+ L+W+ LR ++K GMRNSNC+AIAPTATISNI+GVS IEP Y+NL++KSNLS
Sbjct: 741 DVDRSQRLDWESLRTKVKG-GMRNSNCLAIAPTATISNIVGVSQGIEPIYQNLYVKSNLS 799
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
GEFT +N YLV++LK LWDE M+ +LKYFDG++ I RIP+ L+ +YA AFEI P W+
Sbjct: 800 GEFTVVNAYLVRDLKAADLWDEVMVNDLKYFDGSVVPIDRIPEALKPLYANAFEIDPQWL 859
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
+EA + RQKW+DQSQSLN+Y SGKK+DETY+LAW RGLKTTYYLRS+ A A+KS
Sbjct: 860 VEAAARRQKWLDQSQSLNLYFGQPSGKKIDETYRLAWRRGLKTTYYLRSLGATAAEKSTV 919
Query: 704 EMGI 707
G+
Sbjct: 920 SKGV 923
>gi|88812073|ref|ZP_01127325.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
mobilis Nb-231]
gi|88790577|gb|EAR21692.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
mobilis Nb-231]
Length = 955
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/712 (61%), Positives = 570/712 (80%), Gaps = 7/712 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEIKQI--DIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V A LL+ +++E G E ++ +Y +YF ++ +G++ +LL
Sbjct: 220 IEREPGYSYVAAGLLLDTLRREALSFLGGVEAGATFEEMAKRYPDYFIAYVRRGVELELL 279
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L EF+L L+ L P RD QF YLGL+ LYDRYFLH +G E+PQ FFMR+AMGL+
Sbjct: 280 DPRLLEFDLERLARVLEPARDRQFGYLGLQTLYDRYFLHYDGTHFELPQAFFMRVAMGLA 339
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
LNE +RE+ A +FY LL+SF+FM STPTLFN+GT R QLSSCYLST+PDDL GI+ +I++
Sbjct: 340 LNEIDREERAAEFYRLLASFDFMSSTPTLFNAGTRRPQLSSCYLSTIPDDLDGIYSAIRD 399
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT VR+LG+ IKGTNGRSQGV+PFLKV ND AVAVNQGG+R+GA+C
Sbjct: 400 NALLSKFAGGLGNDWTPVRALGAHIKGTNGRSQGVVPFLKVANDTAVAVNQGGRRRGAVC 459
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLE WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDLFM+RVI ++ WTLFSP + PD
Sbjct: 460 AYLEIWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLFMRRVIDEADWTLFSPDETPD 519
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G FE Y YE Q + G+++ +K++SA+ LWR++LSMLFETGHPWITFKDACN
Sbjct: 520 LHDLYGAAFEAHYREYEAQAERGELRNYKRVSAVALWRRMLSMLFETGHPWITFKDACNA 579
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ +D +L++T+R AM
Sbjct: 580 RSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVGAEGIDAARLERTVRTAM 639
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y+V +A+ +N+RHRPVGLG+MGFQD L+ + +PY+S+EA+ FAD+SME
Sbjct: 640 RMLDNVIDINWYSVPQARRANMRHRPVGLGVMGFQDALYRLGLPYASREAVDFADRSMET 699
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS+ELA+E+G Y+S+ GSLW +GILP DS++LL ++RG L ++ S +L+W
Sbjct: 700 ISYYAIQASSELAQERGAYASFAGSLWSRGILPIDSIRLLAEQRGEP-LTMDTSTTLDWD 758
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI++ GMRNSNC+AIAPTATI+NI+GVS SIEPTYRNL++KSNLSGEFT +N +LV
Sbjct: 759 ALRERIRRTGMRNSNCLAIAPTATIANIVGVSPSIEPTYRNLYVKSNLSGEFTVVNPHLV 818
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ LK +GLWD ++ +LKYFDG++ I R+P+ ++ +Y TAFEI PNW++EA S RQKW+
Sbjct: 819 EALKARGLWDAVLVNDLKYFDGSVQAIERVPEPIKALYTTAFEIDPNWLVEAASRRQKWL 878
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQSQSLN+Y++ SG KLD Y+ AW RGLKTTYYLRS+ A + +KS G
Sbjct: 879 DQSQSLNLYMAEASGPKLDALYRNAWRRGLKTTYYLRSLGATHVEKSTVADG 930
>gi|255019899|ref|ZP_05291974.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Acidithiobacillus caldus ATCC 51756]
gi|254970679|gb|EET28166.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Acidithiobacillus caldus ATCC 51756]
Length = 945
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/724 (62%), Positives = 567/724 (78%), Gaps = 19/724 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y+ TARLL+ +++EV G+ ++ +Y EYF ++ GI ++LL+P+LA+
Sbjct: 202 IEQDPAYAHATARLLLDRVRREVLGEPATHAEMAQRYPEYFKDYLRTGIQHELLDPRLAQ 261
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L ++ AL PERDL F YLGL+ILYDRYFLH+ RIE+PQ F+MR+AMGL+L E +R
Sbjct: 262 FDLDRIAAALRPERDLDFQYLGLQILYDRYFLHVRERRIELPQAFWMRVAMGLALEEIDR 321
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI FY +LS F F+ STPTLFN+GT+R QLSSC+L+TV DDL GI+E+IK+NALLSK
Sbjct: 322 EEQAIAFYEVLSRFEFVSSTPTLFNAGTLRPQLSSCFLTTVADDLDGIYEAIKDNALLSK 381
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
Y+GGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 382 YSGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 441
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV WTLFSP +V DLH+ G
Sbjct: 442 HLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVEANGQWTLFSPNEVADLHDLTG 501
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ F+E Y YE G+I LFK++ AL LWRK+L+MLFETGHPWITFKD CN+RSPQQH
Sbjct: 502 QAFKERYEHYERLADAGEITLFKRLPALQLWRKMLTMLFETGHPWITFKDPCNLRSPQQH 561
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----------------KLDP 403
VG++HSSNLCTEITLNTS EI VCNLGS+NL H++ G +D
Sbjct: 562 VGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVAHLRAGLPGQGLRTEASADELLALVDT 621
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
KL +T+R+AMRMLDNVID+NYYAV KA+ SNLRHRPVGLG+MGF D L ++IPY+S+
Sbjct: 622 DKLARTVRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFSDALLALRIPYASQA 681
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A++FAD S E+I Y+A AS +LA E+G Y S+ GSLW QGILP DS++LL + R + +
Sbjct: 682 AVEFADISQELISYHAIDASADLARERGSYRSFPGSLWSQGILPLDSIELLARSRVAG-V 740
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
V+ S+ L+W+ LR ++K GMRNSNC+AIAPTATISNI+GVS IEP Y+NL++KSNLS
Sbjct: 741 DVDRSQRLDWESLRTKVKG-GMRNSNCLAIAPTATISNIVGVSQGIEPIYQNLYVKSNLS 799
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
GEFT +N YLV++LK LWDE M+ +LKYFDG++ I RIP+ L+ +YA AFEI P W+
Sbjct: 800 GEFTVVNAYLVRDLKAADLWDEVMVNDLKYFDGSVVPIDRIPEALKPLYANAFEIDPQWL 859
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
+EA + RQKW+DQSQSLN+Y SGKK+DETY+LAW RGLKTTYYLRS+ A A+KS
Sbjct: 860 VEAAARRQKWLDQSQSLNLYFGQPSGKKIDETYRLAWRRGLKTTYYLRSLGATAAEKSTV 919
Query: 704 EMGI 707
G+
Sbjct: 920 SKGV 923
>gi|110635037|ref|YP_675245.1| ribonucleotide-diphosphate reductase subunit alpha [Chelativorans
sp. BNC1]
gi|110286021|gb|ABG64080.1| ribonucleoside-diphosphate reductase, alpha subunit [Chelativorans
sp. BNC1]
Length = 954
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/755 (59%), Positives = 585/755 (77%), Gaps = 16/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKE----VFGK--EIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P YSQV+ARLL+ +++E V G+ + Q ++ +Y YF FI GI +++
Sbjct: 210 VETEPNYSQVSARLLLDKLRREALTFVEGRPTQATQAEMVERYPAYFEGFIAAGIQAEMI 269
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L F+L L AL PERDL+F YLG + LYDRYFLH +G+R E+PQ FFMR+AMGL+
Sbjct: 270 DPELGRFDLKRLGAALKPERDLRFQYLGFQTLYDRYFLHEDGVRYELPQAFFMRVAMGLA 329
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE AI+FY+L+S+F+FMCSTPTLFN+GT+R QLSSC+L+TV DDL GIF+++K+
Sbjct: 330 LREIDREARAIEFYDLISTFDFMCSTPTLFNAGTLRPQLSSCFLTTVSDDLDGIFKAVKD 389
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG+SQG++PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 390 NALLAKYSGGLGNDWTPVRGLGARIKGTNGKSQGIVPFLKVANDTAIAVNQGGKRKGAVC 449
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV WTLFSP + PD
Sbjct: 450 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMERVEADGEWTLFSPDETPD 509
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F+ +Y YE + G+I++F+++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 510 LHDLYGPAFKAAYEEYEARAARGEIRVFRQVRAVDLWRRMLTMLFETGHPWITFKDPCNL 569
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQ+H G++HSSNLCTEITLNTSK+E+ VCNLGSINL H+ LD KL +T+ AM
Sbjct: 570 RSPQRHAGVVHSSNLCTEITLNTSKDEVAVCNLGSINLAAHVSEKGLDMEKLARTVATAM 629
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRPVGLG+MGFQD L +++PY+S+ A++FAD+SME
Sbjct: 630 RMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFQDALQTLRLPYASEGAVEFADRSMEA 689
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS ELA+E+G Y+S++GSLW +G+LP DSL + + RG + + +L+W+
Sbjct: 690 IAYHAISASVELAKERGAYASFEGSLWSKGVLPIDSLSFVAESRGVDGM--DRGTTLDWE 747
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+ + GMRNSN +AIAPTATISNI GVS SIEP Y+NL +KSN+SG+FT +N LV
Sbjct: 748 SLRARVVEHGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLFVKSNMSGDFTVVNAALV 807
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWDE M+++LKY+DG L QI R+PDDL+ +YATAFEI P W+IEA S RQKWI
Sbjct: 808 HDLKARGLWDEVMVSDLKYYDGLLGQIDRVPDDLKALYATAFEIDPAWLIEAASRRQKWI 867
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N SGKKLDE Y+LAW +GLKTTYYLRS SA + +KS + +N
Sbjct: 868 DQAQSLNLYIANPSGKKLDELYRLAWRKGLKTTYYLRSRSATHVEKSTLKRADGKLNAVA 927
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + L+ + K C I D +CE+CQ
Sbjct: 928 VMPQPAAFELEGV---KACAI-----DDPDCEACQ 954
>gi|261855610|ref|YP_003262893.1| ribonucleotide-diphosphate reductase subunit alpha
[Halothiobacillus neapolitanus c2]
gi|261836079|gb|ACX95846.1| ribonucleoside-diphosphate reductase, alpha subunit
[Halothiobacillus neapolitanus c2]
Length = 957
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/755 (61%), Positives = 583/755 (77%), Gaps = 19/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEV--FGKE----IKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EKDP YS V ARLL+ I+ E F K+ Q ++ + +YF +IN GI+++LL
Sbjct: 216 IEKDPNYSFVAARLLLDGIRSEALRFTKQPVTVCTQSELSGLFADYFQSYINTGIEHELL 275
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P L ++++ L++A+ RDLQF+YLGL+ LYDRYFLH G+R E+PQ FFMR+AMGL+
Sbjct: 276 DPTLRQYDIKRLTDAIDTSRDLQFSYLGLQTLYDRYFLHEGGVRFELPQAFFMRVAMGLA 335
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +RE AI+FY LLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GIF +IK+
Sbjct: 336 INEIDRETHAIEFYKLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFAAIKD 395
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDW++VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 396 NALLSKFAGGLGNDWSRVRALSSHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 455
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFMKRV+++ WTLFSP D PD
Sbjct: 456 AYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVMEEGEWTLFSPADCPD 515
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G FE++Y YE + G++K F++I A LWRK+LSMLFETGHPWITFKD CN+
Sbjct: 516 LHDLTGLAFEKAYTAYEARVDRGEMKNFRRIKATNLWRKMLSMLFETGHPWITFKDPCNL 575
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
R QH G++HSSNLCTEITL+T+ EI VCNLGS+NL H+ LD KL +TI+ AM
Sbjct: 576 RYTNQHAGVVHSSNLCTEITLHTNDQEIAVCNLGSVNLAQHVTENGLDQEKLARTIKTAM 635
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVI+ NYY+V +A+ SNLRHRPVGLGIMGFQD LHI KIPYSS++AI+FAD+SME
Sbjct: 636 RMLDNVIEYNYYSVPQARNSNLRHRPVGLGIMGFQDALHIQKIPYSSEQAIEFADRSMET 695
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS++LA E+GRY S++GSLW +GILP DS+ LL + RG KYL +N +L+W+
Sbjct: 696 VSYYAISASSDLAAERGRYQSFEGSLWSRGILPIDSIDLLAEARG-KYLVMNRDTTLDWE 754
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R +IK GMRNSN +AIAPTATISNI GV+ SIEPT+ NL +KSNLSGEFT IN YLV
Sbjct: 755 AVRAKIKVQGMRNSNTMAIAPTATISNICGVAQSIEPTFENLFVKSNLSGEFTVINPYLV 814
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK LWDE M+ +LKYFDG++ QI RIPD L+ +YATAFE+ P W+IEAGS RQKWI
Sbjct: 815 RDLKALDLWDEVMVNDLKYFDGSVQQIDRIPDSLKALYATAFEVEPRWLIEAGSRRQKWI 874
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y+++ SG KLD+ YK AWL GLKTTYYLR+ S +K+ LD
Sbjct: 875 DQAQSLNLYLADPSGPKLDQMYKNAWLVGLKTTYYLRASSKTRVEKTTM------TKLDG 928
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++G + + K C I D CE+CQ
Sbjct: 929 -KLRGVSADPIAEALPKACAI-----DDPGCEACQ 957
>gi|54294661|ref|YP_127076.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
pneumophila str. Lens]
gi|53754493|emb|CAH15977.1| hypothetical protein lpl1738 [Legionella pneumophila str. Lens]
Length = 942
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/760 (61%), Positives = 589/760 (77%), Gaps = 35/760 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK----------EIKQIDIPIKYKEYFSKFINKGID 50
+EK+P Y+ V+ARLL+ ++ E K E+ QI Y YF +I +GI
Sbjct: 207 VEKEPNYTYVSARLLLDSLRSEALTKLNIKSEATFDEMAQI-----YPVYFKSYIEQGIA 261
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+L+PK+ +F+L LS ALLPERD++F YL L+ LYDRYF+H G+R E+PQ FFMR+A
Sbjct: 262 QGMLDPKMTDFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVA 321
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
MGL+L E ++E+ AI+FY LLSSF++M STPTLFNSGT+R QLSSCYL+TVPD L GI+
Sbjct: 322 MGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYS 381
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
+IK+NALLSKYAGGLGNDWT VR++G+ IKGTNG+SQGV+PFL V + AVAVNQGGKRK
Sbjct: 382 AIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRK 441
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA+CAYLE WH D+EEF+ELRKNTGDDRRRTHDMN A+WVPDLFMKRV + WTLFSP
Sbjct: 442 GAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPD 501
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+VPDLH+++GK FE Y+ YE + + G I+ K I A+ LWR++LSMLFETGHPW+TFKD
Sbjct: 502 EVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTIPAVKLWRRMLSMLFETGHPWLTFKD 561
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
CN+RSPQQH G+IHSSNLCTEITLNTS+ EI VCNLGSINL H+KNGKLD KLK+TI
Sbjct: 562 PCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTI 621
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
A+RMLDNVIDINYY+V +A+ SNL+HRP+GLGIMGFQD L+ +K+ Y+SKEAI+FAD
Sbjct: 622 STAIRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADS 681
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
SME+I YYA AS +LA+E+G YS+Y+GSLW +GILP DS+ LL++ R +KYL+ + S+
Sbjct: 682 SMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSR-NKYLEQDRSQK 740
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
L+W+ LR +++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N
Sbjct: 741 LDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVN 800
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV +LK LWDE M+ +LKYF+G++ ISRIP++L+ YAT+FEI P W++EA S R
Sbjct: 801 PYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKSRYATSFEIDPMWLVEAASRR 860
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDS 709
QKWIDQ+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS G +++
Sbjct: 861 QKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTVTDGALNA 920
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
V L + K C I +CE+CQ
Sbjct: 921 VKLIDTEPKA-------------CSITDP-----DCEACQ 942
>gi|299134881|ref|ZP_07028073.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
1NLS2]
gi|298590691|gb|EFI50894.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
1NLS2]
Length = 967
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/764 (59%), Positives = 588/764 (76%), Gaps = 24/764 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P Y+ V+ARLL+ ++ EV Q D+ +Y EYF +I GI+ +LL
Sbjct: 213 VEQEPNYAYVSARLLLDKLRSEVLSFVHGTPTSASQSDMATRYAEYFPAYIKTGIEAELL 272
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L +L+ L++AL PERD+ F +LGL+ LYDRYFLH+ G RIE+PQ FFMR+AMGL+
Sbjct: 273 DPELGRHDLARLASALKPERDMLFQFLGLQTLYDRYFLHVHGARIELPQAFFMRVAMGLA 332
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FYNLLSSF+FM STPTLFNSGT+R QLSSC+L+TV DDL GIF+++K+
Sbjct: 333 MREIDREGRAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADDLDGIFKAVKD 392
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 393 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 452
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLFSP + P+
Sbjct: 453 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQDGEWTLFSPDETPE 512
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F+ +Y YE + G++++FK++ A LWR++L+MLFETGHPWITFKD CN+
Sbjct: 513 LHDLYGPRFKAAYEAYEAKAARGEMRVFKQVRATDLWRRMLTMLFETGHPWITFKDPCNL 572
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNTS +E+ VCNLGSINL H LD KLK+TI A+
Sbjct: 573 RSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREGLDQNKLKRTITTAV 632
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNL+HRPVGLG+MGFQD LH+ +IP +S+ A+ FAD SME+
Sbjct: 633 RMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHVQRIPIASEAAVAFADASMEI 692
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS +LA E+GRY S+DGSLW QGILP DS+ +L K R L N S +L+W
Sbjct: 693 ISYHAISASADLAVERGRYPSFDGSLWSQGILPIDSVAVLSKSRDGTAL--NASMTLDWT 750
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++K GMRNSN +AIAPTATISNI GV+ SIEP+Y+NL +KSN+SG+FT +N +LV
Sbjct: 751 GLRERVRKDGMRNSNVMAIAPTATISNICGVAQSIEPSYQNLFVKSNMSGDFTVVNEHLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWDE M+++LKYFDG++ QI R+PDDL+ +YATAFE+ +W+IE+ + RQKWI
Sbjct: 811 RDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEVDTSWLIESAARRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N SGKKLD+ Y+LAW GLKTTYYLRS SA + +KS + G D L+
Sbjct: 871 DQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKSTLK-GTDG-KLNA 928
Query: 715 ISIKGY---------NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S G N ++ K C I D +CE+CQ
Sbjct: 929 VSASGMLAHAPIIVPNATAPDLDGVKACSI-----DNPDCEACQ 967
>gi|254784924|ref|YP_003072352.1| ribonucleotide-diphosphate reductase subunit alpha [Teredinibacter
turnerae T7901]
gi|237686086|gb|ACR13350.1| ribonucleoside-diphosphate reductase alpha subunit, class I
[Teredinibacter turnerae T7901]
Length = 961
Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/755 (61%), Positives = 586/755 (77%), Gaps = 13/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P Y+ TARLLM ++ E + ++ + Y +I++GI+ +LL+
Sbjct: 214 VEKEPNYTYATARLLMDKLRAEALAFLDVATQATSAEMEMFYPNALPAYISRGIELELLD 273
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA+F+L LL AL+PERD QF YLGL+ LYDRYFLH +G R E+PQ FFMR+AMGL++
Sbjct: 274 PALADFDLQLLGAALIPERDQQFTYLGLQTLYDRYFLHSDGTRFELPQIFFMRVAMGLAM 333
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++ AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL++VPDDL+GI+ +I++N
Sbjct: 334 REDDKNGRAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTSVPDDLHGIYGAIQDN 393
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 394 AMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 453
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE+WH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLF+P VPDL
Sbjct: 454 YLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEDKEWTLFTPSTVPDL 513
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ FG FEE Y YE + G IK FKK+ A+ LWRK+L MLFETGHPWITFKDACN+R
Sbjct: 514 HDLFGLAFEERYEHYEREAAAGNIKPFKKVRAVDLWRKMLGMLFETGHPWITFKDACNLR 573
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQH G++HSSNLCTEITLNT N EI VCNLGSINL H+ +GKLD KL++++ A+
Sbjct: 574 SPQQHAGVVHSSNLCTEITLNTKANEEIAVCNLGSINLAQHVVDGKLDQEKLQRSVDTAV 633
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V A+ SNLRHRPVGLGIMGFQD L+ M+IPYSS A++FAD+SME
Sbjct: 634 RMLDNVIDINYYSVDTARNSNLRHRPVGLGIMGFQDALYKMRIPYSSAAAVEFADRSMEA 693
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS+ LA E+G YS+++GSLW QG+LP DS++LL K RG ++++ + + +L+W
Sbjct: 694 VSYYAISASSALASERGSYSTFEGSLWSQGVLPIDSIQLLAKNRGEQFIEQDQTTTLDWD 753
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LRN +K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 754 TLRNTVKTQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 813
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWD M+ +LKY++G++ +I RIPDDL+ +YATAFE+ P WI++A S RQKWI
Sbjct: 814 HDLKDRGLWDSVMVNDLKYYEGSVFKIDRIPDDLKLLYATAFEVEPRWIVDAASRRQKWI 873
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YIS +GKKLD TY++AW RGLKTTYYLR+++A +KS + G S+N
Sbjct: 874 DQAQSLNLYISGANGKKLDITYRMAWYRGLKTTYYLRALAATTTEKSTIDTG--SLNAVS 931
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + K C + D +CE+CQ
Sbjct: 932 SGAPAANISAGPADVPKACSL-----DDPDCEACQ 961
>gi|335424304|ref|ZP_08553315.1| ribonucleotide-diphosphate reductase subunit alpha [Salinisphaera
shabanensis E1L3A]
gi|334889955|gb|EGM28239.1| ribonucleotide-diphosphate reductase subunit alpha [Salinisphaera
shabanensis E1L3A]
Length = 1009
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/711 (62%), Positives = 565/711 (79%), Gaps = 8/711 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-------KEIKQIDIPIKYKEYFSKFINKGIDNKL 53
+E +P Y V ARLLM I+ E + ++ +Y YF FI G++++L
Sbjct: 220 LEAEPNYGTVAARLLMDKIRHEGLTFLADGAVEYATHAEMRERYPAYFKDFIAAGVEHEL 279
Query: 54 LNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGL 113
++P+L E++L L AL+ +RDL F YLGL+ LYDRYF+H E R E+PQ F+MR+AMGL
Sbjct: 280 IDPQLGEYDLDRLGQALIADRDLSFTYLGLQTLYDRYFIHHESKRFELPQAFYMRVAMGL 339
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE RE+ AI+FY LLSSF+FM STPTLFNSGT+R QLSSCYL++V DDL+GI+ +++
Sbjct: 340 AINEIEREEKAIEFYKLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTSVSDDLHGIYGAVQ 399
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+NA+LSK+AGGLGNDWT VR++G+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+
Sbjct: 400 DNAMLSKFAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 459
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
CAYLETWH DIEEF++LRKNTGDDRRR HDMN A W+PDLF+KRV+ WTLFSP DVP
Sbjct: 460 CAYLETWHKDIEEFLDLRKNTGDDRRRCHDMNTANWIPDLFVKRVLNDEPWTLFSPNDVP 519
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
DLH+ G FEE+Y+ YE + G+IK +K +SA+ LWRK+LS+LFETGHPW TFKD CN
Sbjct: 520 DLHDLTGNAFEEAYVGYEAKAARGEIKNYKTLSAVNLWRKMLSLLFETGHPWFTFKDPCN 579
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
+RSPQQH G++HSSNLCTEITLNTS EI VCNLGS+NL H++NG+L+ KL+ TI
Sbjct: 580 LRSPQQHKGVVHSSNLCTEITLNTSPGKEIAVCNLGSVNLPQHIENGELNVAKLEATINT 639
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
AMRMLDNVI+ NYY+VK A+ SNLRHRPVG+G+MGFQD L+ +K+PY S +A+ FAD+SM
Sbjct: 640 AMRMLDNVIEYNYYSVKTARDSNLRHRPVGMGLMGFQDALYKLKLPYESSDAVDFADRSM 699
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I Y A AST LAEE+G YS++ GSLWDQGILP DS+K+L + RG++YL + ++L+
Sbjct: 700 EQISYLAIKASTNLAEERGAYSTFKGSLWDQGILPIDSIKILRENRGAEYLDQDEGQTLD 759
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W+ LR R+ + GMRNSNC+AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN Y
Sbjct: 760 WETLRERVTRVGMRNSNCMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 819
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV++LK GLWDE M +LKY+DG++ I RIPDDL+ +Y AFEI P W++EAGS RQK
Sbjct: 820 LVEDLKALGLWDEVMANDLKYYDGSVQGIDRIPDDLKVLYKCAFEIDPRWLVEAGSRRQK 879
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
W+DQ+QSLN+Y++ SG+KLDE YK AW +GLKTTYYLRS SA + +KS
Sbjct: 880 WLDQAQSLNLYMAEPSGRKLDELYKFAWKKGLKTTYYLRSTSATHTEKSTI 930
>gi|83649536|ref|YP_437971.1| ribonucleotide-diphosphate reductase subunit alpha [Hahella
chejuensis KCTC 2396]
gi|83637579|gb|ABC33546.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC
2396]
Length = 953
Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/705 (63%), Positives = 566/705 (80%), Gaps = 5/705 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS V ARLL+ +++E + ++ Y F + + ++++LL+
Sbjct: 210 IEEEPNYSYVCARLLLDGLREESLSYLNIAASATEGEMAELYPTAFRAIVERCVEHELLS 269
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L +F+L L AL PERD Q YLGL+ LYDRYF+H R+E+PQ FFMR+AMGLS+
Sbjct: 270 PELLKFDLERLGAALKPERDRQLTYLGLQTLYDRYFIHWRETRLELPQAFFMRVAMGLSV 329
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + AI+FY+LLSSF++MCSTPTLFN+GT R QLSSCYL+TVPDDL GI+ +IK+N
Sbjct: 330 QEDDPNARAIEFYDLLSSFDYMCSTPTLFNAGTNRPQLSSCYLTTVPDDLEGIYGAIKDN 389
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VRSLGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 390 ALLSKWAGGLGNDWTPVRSLGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 449
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE+WH+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFMKRV + WTLFSP D PDL
Sbjct: 450 YLESWHLDIEEFLELRKNTGDERRRTHDMNSANWIPDLFMKRVFEDKEWTLFSPSDAPDL 509
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G FE Y YE+ + G I LFKK+ A LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 510 HDLYGSAFEARYTHYESLVESGAITLFKKVPAQNLWRKMLSMLFETGHPWVTFKDPCNLR 569
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQHVG++HSSNLCTEITLNTS++EI VCNLGS+NL H++NG++D +L+ T+ A+R
Sbjct: 570 SPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLVNHIRNGEIDHDRLRNTVYTAVR 629
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV +A+ +NLRHRPVG+G+MGFQD L+ + +PYSS EA++FADQSME+I
Sbjct: 630 MLDNVIDINYYAVPQARNANLRHRPVGMGLMGFQDALYKLGLPYSSVEAVRFADQSMELI 689
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS+ LA+E+GRY +Y+GSLWDQG+LP DSL LE+ERG+++ ++ SL+W
Sbjct: 690 SYFAITASSNLAKERGRYETYEGSLWDQGVLPIDSLDRLEQERGAEFCTLDRGHSLDWAP 749
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R +KK GMRNSN +AIAPTATISNI+GVS SIEPTY+NL +KSNLSGEFT IN +LV+
Sbjct: 750 VRELVKKQGMRNSNVMAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVINPWLVQ 809
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
ELK + LWD M+ +LKYFDG+++QI RIP+D+++++ TAFEI P W++EA S RQKWID
Sbjct: 810 ELKARDLWDSVMVNDLKYFDGSVAQIDRIPEDVKQLFLTAFEIDPRWLVEAASRRQKWID 869
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKK 700
Q QSLN+Y++ SGKKLD YKLAW RGLKTTYYLRS+ A +K
Sbjct: 870 QGQSLNLYMAEPSGKKLDNLYKLAWSRGLKTTYYLRSLGATQMEK 914
>gi|345865591|ref|ZP_08817771.1| ribonucleoside-diphosphate reductase subunit alpha [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345878371|ref|ZP_08830088.1| cytochrome c class I [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344224627|gb|EGV51013.1| cytochrome c class I [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|345123329|gb|EGW53229.1| ribonucleoside-diphosphate reductase subunit alpha [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 961
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/711 (62%), Positives = 571/711 (80%), Gaps = 10/711 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK--------YKEYFSKFINKGIDNK 52
++++P YSQV+ARLL+ +++E +D P++ Y +YF ++ + + +
Sbjct: 219 IDQEPNYSQVSARLLLDILRREALSFLDLDLDNPVQTQAEMGKHYADYFKAYVKRAVKLE 278
Query: 53 LLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAM 111
LL+ +L +++L +++A+ PERDLQFNYLGL+ LYDRYF+H E G R E+PQ FFMR+AM
Sbjct: 279 LLDSRLQQYDLQRITDAIKPERDLQFNYLGLQTLYDRYFIHTEEGTRFELPQAFFMRVAM 338
Query: 112 GLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFES 171
GL++NE +RE AI+FYNLLSSF+FM STPTLFN+ T+R QLSSCYL+T+ DDL GI+ +
Sbjct: 339 GLAINEIDREGRAIEFYNLLSSFDFMSSTPTLFNAATLRPQLSSCYLTTISDDLDGIYSA 398
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKG 231
IK+NALLSK+AGGLGNDW++VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKG
Sbjct: 399 IKDNALLSKFAGGLGNDWSRVRGLGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKG 458
Query: 232 AICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291
A+CAYLETWH+DIE+F+ELRKNTGD+RRRTHDMN A W+PDLFMKRV ++ WTLFSP +
Sbjct: 459 AVCAYLETWHIDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRVAEEGDWTLFSPNE 518
Query: 292 VPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
VPDLH+ G EFE Y E + G+IK+F+ + A+ LWRK+L MLFETGHPWITFKD
Sbjct: 519 VPDLHDLTGAEFEAVYTACEEKAARGEIKVFRSLKAVDLWRKMLGMLFETGHPWITFKDP 578
Query: 352 CNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
CNIR QH G++HSSNLCTEITL+T+ +EI VCNLGS+NL H+ LD KL++T+
Sbjct: 579 CNIRYTNQHAGVVHSSNLCTEITLHTNDSEIAVCNLGSVNLAAHVDENGLDIAKLERTVT 638
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
AMRMLDNVID NYY+V +A++SNLRHRPVGLGIMGFQD L+ +I Y+S++A+ FAD+S
Sbjct: 639 TAMRMLDNVIDYNYYSVPQARHSNLRHRPVGLGIMGFQDALYKQRIGYASEQALTFADRS 698
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
ME + YYA AS+ELA E+GRYSSY+GSLW QG+LP DSL+ L++ RG YL+++ S SL
Sbjct: 699 MEAVSYYAIQASSELAAERGRYSSYEGSLWSQGVLPIDSLQQLKQARGD-YLQIDQSSSL 757
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR ++K GMRNSN +AIAPTATISNI+GVS SIEPTY+NL +KSNLSGEFT +N
Sbjct: 758 DWDALREKVKTQGMRNSNTMAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVVNP 817
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV +LK++GLWDE MI +LKY+DG+L+ I R+P +L+ +YATAFEI P W++EAG+ RQ
Sbjct: 818 YLVHDLKREGLWDEVMINDLKYYDGSLAPIERVPAELKVLYATAFEIDPRWLVEAGARRQ 877
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
KWIDQ QSLN+Y++ SGKKLD YKLAW+RGLKTTYYLRS+ A +K+
Sbjct: 878 KWIDQGQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATAVEKTT 928
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040179|gb|ACT56975.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/755 (60%), Positives = 582/755 (77%), Gaps = 16/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EK+P Y++VTAR L+ +++EV ++ ++ Y EYF ++I +G+ +LL
Sbjct: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ + +F+L L+N L ERD F YLGL+ILYDRYFLHI G RIEMPQ FFMR+AMGL+
Sbjct: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E+ +EK A++FYNLLSSF+FMCSTPTLFNSGT QLSSC+L+TVPDDLYGIF +++E
Sbjct: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+L+KY+GGLGNDWT VR LG+ I GTNG+SQGVIPFLKV ND AVAVNQGGKRKGA+C
Sbjct: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV + + WTLFSP +V D
Sbjct: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +GKEFE +Y YE Q G+IK+F+KISA+ LWRK+L+MLFETGHPWITFKD CNI
Sbjct: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLN+S E VCNLGSINL H N + D KL TIR A+
Sbjct: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R+LDNVIDIN + ++KAK SN HR +GLG+MGFQ LH++ IPY+S EA++ AD+SME
Sbjct: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A AS ELA+E+G YSS+ GSLWDQG+ P DS+ LL + R L +N + L W
Sbjct: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWD 747
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+L+ R+K GMRNSNC+AIAPTATI+NI GVS SI+P+Y+NL++KSN+SG+FT +N +LV
Sbjct: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK++ LWDE+MI++LKY DG++ I RIPDDL+KI+ATAFEI P W+IE+ S RQKWI
Sbjct: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y+ SGKKLD Y+ AWL GLKTTYYLRS SA +KS + G+D L+
Sbjct: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK-GVDG-KLNA 925
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + N + + C ++ ECE CQ
Sbjct: 926 VPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
>gi|256822963|ref|YP_003146926.1| ribonucleoside-diphosphate reductase subunit alpha [Kangiella
koreensis DSM 16069]
gi|256796502|gb|ACV27158.1| ribonucleoside-diphosphate reductase, alpha subunit [Kangiella
koreensis DSM 16069]
Length = 957
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/756 (60%), Positives = 588/756 (77%), Gaps = 20/756 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P Y+ VTARLL+ I+ E K Q ++ Y E F +++ G++N+LL+
Sbjct: 215 IEKEPNYTYVTARLLLDSIRSEALRELGVAKRATQSEMNAIYPEAFKAYLSVGVENELLS 274
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L F+L ++NA+ PERD+ F YLG++ L+DRYF+H + +RIE+PQ F+MR+AMGL++
Sbjct: 275 PELLSFDLDKIANAIKPERDMLFTYLGIQTLFDRYFIHKDEVRIELPQVFWMRVAMGLAV 334
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE +RE AI+FY++LS+F++M STPTLFNSGT+R QLSSCYL+ VPDDL GI+ +IK+N
Sbjct: 335 NEDDREARAIEFYDVLSTFHYMSSTPTLFNSGTLRPQLSSCYLTNVPDDLDGIYGAIKDN 394
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR LG+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 395 ALLSKFAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 454
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLF+KRV WTLFSP +VPDL
Sbjct: 455 YLETWHIDIEEFLELRKNTGDDRRRTHDMNSANWVPDLFLKRVSSDGDWTLFSPNEVPDL 514
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GKEFEE Y YE K GKIK K I A LWRK+LSMLFETGHPWITFKD CN+R
Sbjct: 515 HDLYGKEFEERYEYYEEMAKYGKIKTAKTIPANVLWRKMLSMLFETGHPWITFKDPCNLR 574
Query: 356 SPQQHVGIIHSSNLCTEITLNT-SKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQHVG++HSSNLCTEITLNT + EI VCNLGS+NL HMK+GKLD +L+KT+ A+
Sbjct: 575 SPQQHVGVVHSSNLCTEITLNTKAGEEIAVCNLGSVNLPKHMKDGKLDTEQLEKTVSTAV 634
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y V A+ SN+RHRPVGLG+MGFQD L++ IPY+S+ A+ FAD +ME
Sbjct: 635 RMLDNVIDINFYPVDTARKSNMRHRPVGLGLMGFQDALYLQNIPYTSEAAVDFADNAMEA 694
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AST+LAEE+G Y S+ GSLW QGILP DS++ L +ERG+++++V+ S +++W
Sbjct: 695 ISYYAIQASTDLAEERGSYESFAGSLWSQGILPIDSIEKLIEERGAEFIEVDTSSTMDWD 754
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N Y+V
Sbjct: 755 TLRERVKTIGMRNSNVMAIAPTATISNISGVSQSIEPTYQNLYVKSNLSGEFTVVNPYMV 814
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
KELK + LWD M+ +LKY++G+L I RIP ++++++ATAFE+ P W++EA S RQKWI
Sbjct: 815 KELKARKLWDSVMVNDLKYYEGSLQHIDRIPSEIKELFATAFEVEPKWLVEAASRRQKWI 874
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLD 713
DQ+QSLN+Y+S SGKKLD Y++AW RGLKTTYYLRS+ A +KS G +++V+
Sbjct: 875 DQAQSLNLYMSEPSGKKLDMVYRMAWFRGLKTTYYLRSLGATSTEKSTISDGKLNAVSSG 934
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ K C I D +CE+CQ
Sbjct: 935 PAAVGSAAP--------KACAI-----DEPDCEACQ 957
>gi|237798940|ref|ZP_04587401.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|237806193|ref|ZP_04592897.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021794|gb|EGI01851.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331027306|gb|EGI07361.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 748
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/758 (61%), Positives = 578/758 (76%), Gaps = 30/758 (3%)
Query: 12 ARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLL 66
ARLLM ++ E G ++ Y + ++ GI +LLNP LAEF+L L
Sbjct: 1 ARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKL 60
Query: 67 SNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIK 126
A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++ E RE AI+
Sbjct: 61 GKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIE 120
Query: 127 FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLG 186
FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +NA+LSK+AGGLG
Sbjct: 121 FYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLG 180
Query: 187 NDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEE 246
NDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETWHMDIEE
Sbjct: 181 NDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEE 240
Query: 247 FIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEES 306
FIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDLH+ GK F+E
Sbjct: 241 FIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQER 300
Query: 307 YILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIH 365
Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+RSPQQHVG++H
Sbjct: 301 YEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 360
Query: 366 SSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINY 425
SSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+RMLDNVIDINY
Sbjct: 361 SSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINY 420
Query: 426 YAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTE 485
Y+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME + YYA AS +
Sbjct: 421 YSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCD 480
Query: 486 LAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGM 545
LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W +R R++K G+
Sbjct: 481 LADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GI 539
Query: 546 RNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDE 605
RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV++LK + LWD
Sbjct: 540 RNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDS 599
Query: 606 SMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS 665
MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWIDQ+QSLN+YI+
Sbjct: 600 VMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIA 659
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQ 725
SGKKLD TY++AW RGLKTTYYLR+++A +KS G L+ +S G+ +
Sbjct: 660 GASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNAVSSGGHGPDDS 715
Query: 726 EIKNNK--------------KCLINSEINDVNECESCQ 749
I + C I D +CE+CQ
Sbjct: 716 AITAPRPTEAAPAGPAPVPKACAI-----DEPDCEACQ 748
>gi|406942476|gb|EKD74701.1| hypothetical protein ACD_44C00359G0004 [uncultured bacterium]
Length = 939
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/756 (61%), Positives = 587/756 (77%), Gaps = 24/756 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQI-------DIPIKYKEYFSKFINKGIDNKL 53
+EK+P Y V ARLL+ ++ E E Q+ D+ Y YF FI++GID +L
Sbjct: 201 IEKEPNYGYVAARLLLAELRSEAL--EFLQLPSINSSADMAEAYPRYFDHFIHRGIDVEL 258
Query: 54 LNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGL 113
L+P+LA FNL L ALL +RDL+FNYLGL+ LYDRYFLH G E+PQ FFMR+AMGL
Sbjct: 259 LDPRLANFNLKKLGAALLADRDLKFNYLGLQTLYDRYFLHHHGTHFELPQAFFMRVAMGL 318
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE ++E AI+FY LLSSF++M STPTLFNSGT+R QLSSC+LSTVPDDL I+ +IK
Sbjct: 319 AMNEEDKENRAIEFYLLLSSFDYMSSTPTLFNSGTLRPQLSSCFLSTVPDDLDSIYGAIK 378
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+NALLSK+AGGLGNDWT VR++GS IKGTNG+SQGV+PFL V N AVAVNQGGKR+GA+
Sbjct: 379 DNALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLNVANASAVAVNQGGKRQGAV 438
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
CAYLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP + P
Sbjct: 439 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHENGQWTLFSPSETP 498
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+LH+ +G EFE+ YI YEN+ +++ +K I A+ LWRK+LSMLFETGHPWITFKD CN
Sbjct: 499 ELHDLYGAEFEKVYIEYENKAARCELRQYKTIPAISLWRKMLSMLFETGHPWITFKDPCN 558
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+RSPQQH G+IHSSNLCTEITLNTS++EI VCNLGSINL+ H+ + L+ KL+KT+R A
Sbjct: 559 LRSPQQHTGVIHSSNLCTEITLNTSQDEIAVCNLGSINLSTHITDKGLNIEKLEKTVRTA 618
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+RMLDNVID+NYYAV +A+ SNL+HRP+GLG+MGFQD L+ + IPYSS A++FAD+SME
Sbjct: 619 IRMLDNVIDMNYYAVPQARRSNLKHRPIGLGLMGFQDSLYQLHIPYSSDMAVEFADRSME 678
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I Y+A AS ELA+E+G Y+S++GSLW +GILP DSL+LL+KER +YL++N ++L+W
Sbjct: 679 YISYFAIKASNELAKERGSYASFEGSLWSKGILPIDSLELLQKER-KQYLQLNKEKNLDW 737
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+ LR I+ GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT IN YL
Sbjct: 738 ETLRIAIRTTGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYL 797
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK LWD+ MI +LKYF+G+L++++R+P +L+++YATAFEI P W+IEA + RQKW
Sbjct: 798 VADLKALNLWDDVMINDLKYFNGSLNKLTRVPTELKQLYATAFEIDPLWLIEAAARRQKW 857
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
IDQ QSLN+Y++ SGKKLD Y+ AWLRGLKTTYYLR++ A A+KS +
Sbjct: 858 IDQGQSLNLYLAQASGKKLDTLYRFAWLRGLKTTYYLRTLGATNAEKS---------TIH 908
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K C IN +CE+CQ
Sbjct: 909 DHALNAVTTVATDTTAAKVCSINDP-----DCEACQ 939
>gi|92112800|ref|YP_572728.1| ribonucleotide-diphosphate reductase subunit alpha
[Chromohalobacter salexigens DSM 3043]
gi|91795890|gb|ABE58029.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
DSM 3043]
Length = 976
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/711 (62%), Positives = 562/711 (79%), Gaps = 5/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P Y+ TARLL +++E E ++ Y F +I+KGI+ + L+
Sbjct: 199 VEKEPNYTYATARLLQDNLRREALSFLGIADEATYQEMATLYAPAFKAYIDKGIEFEQLD 258
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
+L EF+L L AL RD QF YLGL+ LYDRYFLH + +R E+PQ FMR+AMGL+L
Sbjct: 259 ERLREFDLDRLGAALDHTRDNQFTYLGLQTLYDRYFLHHDDVRYELPQVMFMRVAMGLAL 318
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE + E AI+FY LLSSF++M STPTLFN+GT RSQLSSCYL+TVPD L GI+ +I++N
Sbjct: 319 NEDDPEARAIEFYELLSSFDYMASTPTLFNAGTQRSQLSSCYLTTVPDQLDGIYSAIRDN 378
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 379 ALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 438
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV WTLFSP PDL
Sbjct: 439 YLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDEEWTLFSPSTCPDL 498
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G FE+ Y YE T+ G++KLFK++ A LWRK+LSMLFETGHPWITFKD CN+R
Sbjct: 499 HDLYGAAFEKRYAEYEEMTRNGQLKLFKRVKAKDLWRKMLSMLFETGHPWITFKDPCNLR 558
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQ H G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ +G+LD KLKKT++ A+R
Sbjct: 559 SPQNHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAQHIVDGQLDGDKLKKTVKTAVR 618
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYYAV +A+ SN +HRPVGLG+MGFQD L+ + I Y+S +A+ FAD SME+I
Sbjct: 619 MLDNVIDINYYAVPQARNSNFKHRPVGLGLMGFQDALYQLGIAYASDDAVTFADTSMELI 678
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS++LA E+GRY S++GSLW +G+LP DS+ L +ERG+ Y++V+ S + +W +
Sbjct: 679 SYHAIEASSDLATERGRYQSFEGSLWSKGVLPIDSIAKLAEERGADYIEVDTSTTQDWAR 738
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR+++ + GMRNSN +AIAPTATISNI GV+ SIEPTY+NL +KSNLSGEFT +N Y+V
Sbjct: 739 LRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQNLFVKSNLSGEFTVVNAYMVN 798
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWDE MI +LKY+DG++ I RIPDDL+ YA+AFE+ P W++EA + RQKWID
Sbjct: 799 DLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASAFEVEPKWLVEAAARRQKWID 858
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR++ A +KS + G
Sbjct: 859 QAQSLNLYIAGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEKSTVDRG 909
>gi|212212092|ref|YP_002303028.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
burnetii CbuG_Q212]
gi|212010502|gb|ACJ17883.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
CbuG_Q212]
Length = 941
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/755 (61%), Positives = 584/755 (77%), Gaps = 26/755 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P Y+ VTARLL++ + +EV +++ DI Y E F FI GI+ + L+
Sbjct: 207 VENEPNYTYVTARLLLHDLYREVLNGLNLPQDLMHEDIAHYYPEAFKNFIRHGIETEHLH 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L F+L+ L+ AL PERD QF YL L+ LYDRY +H + +RIE+PQ FFMR+AMGL+
Sbjct: 267 PNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGLAQ 326
Query: 116 NESN-REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+E R + A++FYN+LSSF+FM STPTLFNSGT+ QLSSC+L+TVPD L GI+ ++K+
Sbjct: 327 SEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGALKD 386
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT VR++G+ IKGTNG+S GV+PFL V + A+AVNQGGKRKGA+C
Sbjct: 387 NALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGAVC 446
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 447 AYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEVPD 506
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+KFG+ FE +Y+ YE + G+I+ K ISAL LWRKILSMLFETGHPW+TFKDACNI
Sbjct: 507 LHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDACNI 565
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG+IHSSNLCTEITLNTS+ EI VCNLGSINL HMK+GKLD KL +T + A+
Sbjct: 566 RSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKTAI 625
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNL+HRP+GLG+MGFQD L++ IPY+S+ A++FADQSME
Sbjct: 626 RMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSMET 685
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS ELA+E+G Y +++ SLW QGILP DS++LL+K RG KY + N ++L+W
Sbjct: 686 ISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRG-KYFEQNTDQTLDWN 744
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ GMRNSN +AIAPTATISNI G+S SIEPTY+NL +KSNLSGEFT IN YLV
Sbjct: 745 ALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYLV 804
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK + LWD M+ +LKY++G++ +I RIP +L+K+YATAFE+ P W++EA S RQKWI
Sbjct: 805 RELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKWI 864
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SGKKLD Y++AWLRGLKTTYYLRS+ A +K+ I L+
Sbjct: 865 DQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKAT----IHDTTLN- 919
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ G N N C I D +CE+CQ
Sbjct: 920 -AVTGQN-------NPNACAI-----DDPDCEACQ 941
>gi|29654844|ref|NP_820536.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
burnetii RSA 493]
gi|161831609|ref|YP_001597388.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
burnetii RSA 331]
gi|29542112|gb|AAO91050.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
RSA 493]
gi|161763476|gb|ABX79118.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
burnetii RSA 331]
Length = 941
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/755 (61%), Positives = 584/755 (77%), Gaps = 26/755 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P Y+ VTARLL++ + +EV +++ DI Y E F FI GI+ + L+
Sbjct: 207 VENEPNYTYVTARLLLHDLYREVLNGLNLPQDLMHEDIAHYYPEAFKNFIRHGIETEHLH 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L F+L+ L+ AL PERD QF YL L+ LYDRY +H + +RIE+PQ FFMR+AMGL+
Sbjct: 267 PNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGLAQ 326
Query: 116 NESN-REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+E R + A++FYN+LSSF+FM STPTLFNSGT+ QLSSC+L+TVPD L GI+ ++K+
Sbjct: 327 SEGEARNQRAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGALKD 386
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT VR++G+ IKGTNG+S GV+PFL V + A+AVNQGGKRKGA+C
Sbjct: 387 NALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGAVC 446
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 447 AYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEVPD 506
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+KFG+ FE +Y+ YE + G+I+ K ISAL LWRKILSMLFETGHPW+TFKDACNI
Sbjct: 507 LHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDACNI 565
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG+IHSSNLCTEITLNTS+ EI VCNLGSINL HMK+GKLD KL +T + A+
Sbjct: 566 RSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKTAI 625
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNL+HRP+GLG+MGFQD L++ IPY+S+ A++FADQSME
Sbjct: 626 RMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSMET 685
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS ELA+E+G Y +++ SLW QGILP DS++LL+K RG KY + N ++L+W
Sbjct: 686 ISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRG-KYFEQNTDQTLDWN 744
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ GMRNSN +AIAPTATISNI G+S SIEPTY+NL +KSNLSGEFT IN YLV
Sbjct: 745 ALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYLV 804
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK + LWD M+ +LKY++G++ +I RIP +L+K+YATAFE+ P W++EA S RQKWI
Sbjct: 805 RELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKWI 864
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SGKKLD Y++AWLRGLKTTYYLRS+ A +K+ I L+
Sbjct: 865 DQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKAT----IHDTTLN- 919
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ G N N C I D +CE+CQ
Sbjct: 920 -AVTGQN-------NPNACAI-----DDPDCEACQ 941
>gi|153208311|ref|ZP_01946690.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|154706203|ref|YP_001423854.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
burnetii Dugway 5J108-111]
gi|165919213|ref|ZP_02219299.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
burnetii Q321]
gi|212219267|ref|YP_002306054.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
burnetii CbuK_Q154]
gi|120576095|gb|EAX32719.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|154355489|gb|ABS76951.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
Dugway 5J108-111]
gi|165917074|gb|EDR35678.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
burnetii Q321]
gi|212013529|gb|ACJ20909.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
CbuK_Q154]
Length = 941
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/755 (61%), Positives = 584/755 (77%), Gaps = 26/755 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P Y+ VTARLL++ + +EV +++ DI Y E F FI GI+ + L+
Sbjct: 207 VENEPNYTYVTARLLLHDLYREVLNGLNLPQDLMHEDIAHYYPEAFKNFIRHGIETEHLH 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L F+L+ L+ AL PERD QF YL L+ LYDRY +H + +RIE+PQ FFMR+AMGL+
Sbjct: 267 PNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGLAQ 326
Query: 116 NESN-REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+E R + A++FYN+LSSF+FM STPTLFNSGT+ QLSSC+L+TVPD L GI+ ++K+
Sbjct: 327 SEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGALKD 386
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT VR++G+ IKGTNG+S GV+PFL V + A+AVNQGGKRKGA+C
Sbjct: 387 NALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGAVC 446
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 447 AYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEVPD 506
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+KFG+ FE +Y+ YE + G+I+ K ISAL LWRKILSMLFETGHPW+TFKDACNI
Sbjct: 507 LHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDACNI 565
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG+IHSSNLCTEITLNTS+ EI VCNLGSINL HMK+GKLD KL +T + A+
Sbjct: 566 RSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKTAI 625
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNL+HRP+GLG+MGFQD L++ IPY+S+ A++FADQSME
Sbjct: 626 RMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSMET 685
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS ELA+E+G Y +++ SLW QGILP DS++LL+K RG KY + N ++L+W
Sbjct: 686 ISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRG-KYFEQNTDQTLDWN 744
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ GMRNSN +AIAPTATISNI G+S SIEPTY+NL +KSNLSGEFT IN YLV
Sbjct: 745 ALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYLV 804
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK + LWD M+ +LKY++G++ +I RIP +L+K+YATAFE+ P W++EA S RQKWI
Sbjct: 805 RELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKWI 864
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SGKKLD Y++AWLRGLKTTYYLRS+ A +K+ I L+
Sbjct: 865 DQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKAT----IHDTTLN- 919
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ G N N C I D +CE+CQ
Sbjct: 920 -AVTGQN-------NPNACAI-----DDPDCEACQ 941
>gi|288941564|ref|YP_003443804.1| ribonucleoside-diphosphate reductase subunit alpha [Allochromatium
vinosum DSM 180]
gi|288896936|gb|ADC62772.1| ribonucleoside-diphosphate reductase, alpha subunit [Allochromatium
vinosum DSM 180]
Length = 985
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/728 (61%), Positives = 577/728 (79%), Gaps = 11/728 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YSQ ARLL+ +++E G Q D+ +Y +YF+ +I + D + L
Sbjct: 224 IEREPQYSQAAARLLLDILRREALGFLDLAVGVETQADMAERYGDYFAAYIKRAADLEHL 283
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGL 113
+ +LA ++L L AL PERDLQF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL
Sbjct: 284 DGQLARYDLKRLGAALKPERDLQFTYLGLQTLYDRYFIHTADGIRFELPQAFFMRVAMGL 343
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE RE+ AI+FY LLSSF+FMCSTPTLFNSG+ R QLSSC+L+TVPDDL GI+ +IK
Sbjct: 344 AINEIEREERAIEFYELLSSFDFMCSTPTLFNSGSPRPQLSSCFLTTVPDDLDGIYSAIK 403
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGVIPFLKV ND A+AVNQGG+R+GA+
Sbjct: 404 DNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVIPFLKVANDTAIAVNQGGRRRGAV 463
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
CAYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLFSP + P
Sbjct: 464 CAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEDGHWTLFSPDETP 523
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
DLH+ G+ FE++Y+ YE + G++K+ K++ A+ LWRK+L+MLFETGHPWI FKD CN
Sbjct: 524 DLHDLTGQAFEQAYVAYEERAARGELKISKRLKAVDLWRKMLAMLFETGHPWIAFKDPCN 583
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+R QHVG++HSSNLCTEITL+T+ E VCNLGSINL H+ + LD +L++T+R A
Sbjct: 584 LRYTNQHVGVVHSSNLCTEITLHTNDLEAAVCNLGSINLAAHITDKGLDTQRLRRTVRTA 643
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVID N+Y V +A+ SNLRHRPVGLG+MGFQD L+ ++IPY+S+EA+ FADQS E
Sbjct: 644 MRMLDNVIDYNFYNVPQARASNLRHRPVGLGLMGFQDALYRLRIPYASQEAVAFADQSTE 703
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AS +LA E+GRY S++GSLW QG+LP DS+ L+E+ RG YL+++ S +L+W
Sbjct: 704 YLSYYAIEASADLAAERGRYPSFEGSLWSQGVLPIDSIGLMEQGRGG-YLQMDTSHTLDW 762
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+LR RI+ GMRNSNC+AIAPTATISNI+GVS SIEPTY+NL +KSNLSGEFT +N YL
Sbjct: 763 DRLRERIQTVGMRNSNCLAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVVNPYL 822
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK++GLWD M+ +LKY+DG+L I RIPD+L+++YATAFEI P W++EA S RQKW
Sbjct: 823 VADLKERGLWDAVMVNDLKYYDGSLLPIDRIPDELKELYATAFEIDPRWLVEAASRRQKW 882
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
+DQ+QSLN+Y+ SGKKLD YKLAW+RGLKTTYYLRS+ A + +KS D+ +
Sbjct: 883 LDQAQSLNLYMQEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTMA---DTGRAN 939
Query: 714 EISIKGYN 721
+S G N
Sbjct: 940 RLSAVGGN 947
>gi|424862959|ref|ZP_18286872.1| ribonucleoside-diphosphate reductase subunit alpha [SAR86 cluster
bacterium SAR86A]
gi|400757580|gb|EJP71791.1| ribonucleoside-diphosphate reductase subunit alpha [SAR86 cluster
bacterium SAR86A]
Length = 957
Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/755 (61%), Positives = 590/755 (78%), Gaps = 11/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P YS VTAR+LM I+ E +E ++ Y E F +I+KGI+ +LN
Sbjct: 208 VEKEPNYSYVTARILMDQIRSEALNFLNIAEESTYQEMEKYYPEAFKAYIDKGIELDILN 267
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L F+L LS A+ RD QF YLGL+ LYDRYF+H + +R E+PQ FFMR++MGL+L
Sbjct: 268 PELKTFDLDKLSQAIDHTRDNQFTYLGLQTLYDRYFIHCDDVRYELPQVFFMRVSMGLAL 327
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE AI+FY LLSSF++M STPTLFNSGT R QLSSCYL+T+PDDL GIF ++K+N
Sbjct: 328 EEENREDRAIEFYRLLSSFDYMSSTPTLFNSGTKRPQLSSCYLTTIPDDLDGIFSAMKDN 387
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSK+AGGLGNDWT VR++ S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 388 ALLSKWAGGLGNDWTPVRAMNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCG 447
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDLFMKRV + WTLFSP + P+L
Sbjct: 448 YLETWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLFMKRVEQDENWTLFSPGEAPEL 507
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE++ K G++ FK I A LWRK+L+MLFETGHPWITFKD+CN+R
Sbjct: 508 HDLVGKAFEEKYEEYEDKAKKGEMNQFKSIPAKELWRKMLTMLFETGHPWITFKDSCNLR 567
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQH G++HSSNLCTEITLNTS + EI VCNLGS+NL HMK+G LD K+K+T+ A+
Sbjct: 568 SPQQHSGVVHSSNLCTEITLNTSADKEIAVCNLGSVNLANHMKDGSLDEEKVKQTVSTAI 627
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVI+INYY+V AK SN +HRP+GLG+MGFQD L++ IPY S EA++FAD+SME+
Sbjct: 628 RMLDNVININYYSVDTAKNSNFKHRPIGLGLMGFQDALYLQDIPYCSDEAVEFADRSMEL 687
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A YASTELA+E+G Y S++GSLW +GILP+DS+ +L + RGS+YL V+ SE+L+W+
Sbjct: 688 ISYSAIYASTELAKERGAYESFEGSLWSKGILPKDSIDILSENRGSEYLNVDRSETLDWE 747
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ K GMRNSN +AIAPTATISNI GV+ SIEPTY+NL++KSNLSGEFT +N +LV
Sbjct: 748 TLRKKVIKDGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGEFTIVNPHLV 807
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK+ LWD+ MI +LKYF+G+LS+ISRIPDD++K+++TAFE+ P +I+E+ S RQKWI
Sbjct: 808 RKLKELDLWDDVMINDLKYFEGSLSEISRIPDDVKKLFSTAFEVEPKYIVESASRRQKWI 867
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI N GKKLD TY++AW GLKTTYYLRSI+A +KS + G L+
Sbjct: 868 DQAQSLNLYIGNADGKKLDITYRMAWYSGLKTTYYLRSIAATSTEKSTVQQG----KLNA 923
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S + QE+ ++D + CE+CQ
Sbjct: 924 VSSEVSQPAAQELGAPAPVPTACSLDDPD-CEACQ 957
>gi|90425008|ref|YP_533378.1| ribonucleotide-diphosphate reductase subunit alpha
[Rhodopseudomonas palustris BisB18]
gi|90107022|gb|ABD89059.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
BisB18]
Length = 960
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/714 (61%), Positives = 568/714 (79%), Gaps = 8/714 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P Y++V+ARLL+ +++E ++ ++ +Y +YF +I GI ++LL
Sbjct: 208 IETEPNYAKVSARLLLDKLRREALSFVAGRPEQATHAEMAGRYGDYFKAYIATGIASELL 267
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L F+L LS AL PERDLQF+YLGL+ LYDRYFLH++G R E+PQ FFMR+A GL+
Sbjct: 268 DRELGRFDLVRLSAALKPERDLQFDYLGLQTLYDRYFLHVDGTRFELPQAFFMRVACGLA 327
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE AI+FY LLSSF+FM STPTLFN+GT+R QLSSC+L+TVPDDL GIF+SIK+
Sbjct: 328 LREIDREDKAIEFYELLSSFDFMASTPTLFNAGTLRPQLSSCFLTTVPDDLDGIFKSIKD 387
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT+VR LG+ IKGTNG SQGV+PFLKV ND A+AVNQGGKRKGA+C
Sbjct: 388 NALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 447
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIE+F++LRKNTGDDRRRTHDMN A WVPDLFM RV + WTLFSP + PD
Sbjct: 448 AYLETWHIDIEQFLDLRKNTGDDRRRTHDMNTANWVPDLFMTRVEQDGGWTLFSPDETPD 507
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G+ F E Y YE + + G++++FK++ A LWRK+L+MLFETGHPWITFKD CN+
Sbjct: 508 LHDLTGQAFVERYEQYEAKAERGEMRVFKRLRAADLWRKMLTMLFETGHPWITFKDPCNL 567
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQ H G++HSSNLCTEITLNTS E+ VCNLGSINL H+ NG +D +L +++ M
Sbjct: 568 RSPQSHAGVVHSSNLCTEITLNTSTTEVAVCNLGSINLVNHLVNGAIDHARLARSVGTGM 627
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNV+D+N+Y + +A+ SNL+HRPVGLGIMGFQD L+I+++PY+S++A+ FAD+SME
Sbjct: 628 RMLDNVLDVNFYTIPEARSSNLKHRPVGLGIMGFQDALNILRLPYASEQAVAFADESMES 687
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y+A AS +LA E+GRY S++GSLW +G+LP DS+ ++ R ++V+ S L+W
Sbjct: 688 VSYWAISASVDLAAERGRYPSFEGSLWSKGVLPLDSIARVDAARALP-VEVDRSFRLDWD 746
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATISNI GVS SIEP Y+NL++KSN+SG+FT +N YLV
Sbjct: 747 GLRARVKAVGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNTYLV 806
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWDE M+++LKYFDG++ QI R+PDDL+ +YATAFEI W+IEA + RQKWI
Sbjct: 807 NDLKARGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDSAWLIEAAARRQKWI 866
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
DQSQSLN+Y++N +GKKLD Y+LAW RGLKTTYYLRS SA + +KS + G D
Sbjct: 867 DQSQSLNLYLANPNGKKLDALYRLAWRRGLKTTYYLRSRSATHVEKSTLK-GTD 919
>gi|384086263|ref|ZP_09997438.1| ribonucleoside-diphosphate reductase subunit alpha
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 950
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/768 (59%), Positives = 579/768 (75%), Gaps = 40/768 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y+ V+ARLL+ ++ EV G+ Q ++ +Y EYF ++ GI ++L++P+L +
Sbjct: 204 IERDPAYAYVSARLLLDRVRWEVLGEAATQAEMAARYPEYFRDYLQTGIAHELIDPRLGQ 263
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L ++ A+ PERDL F YLGL+ILYDRYFLH+ IE+PQ F+MR+AMGL++NE +R
Sbjct: 264 YDLDRITAAIKPERDLNFQYLGLQILYDRYFLHVRERHIELPQSFWMRVAMGLAVNEVDR 323
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI FY +LSSF+F+ STPTLFNSGT+R QLSSC+L+TV DDL I+E+IKENALLSK
Sbjct: 324 EEQAIAFYEVLSSFDFVSSTPTLFNSGTLRPQLSSCFLTTVGDDLDDIYEAIKENALLSK 383
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
++GGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 384 FSGGLGNDWTPVRALGSFIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 443
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLFSP + DLH+ G
Sbjct: 444 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVESGTAWTLFSPNETADLHDLTG 503
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
F E Y YE G+I+L+KKI AL LWRK+L+MLFETGHPWITFKD CN+RSPQQH
Sbjct: 504 SAFRERYEHYERMADAGEIELYKKIPALQLWRKMLTMLFETGHPWITFKDPCNLRSPQQH 563
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-------------------L 401
VG++HSSNLCTEITLNT+ EI VCNLGS+NL H+KN L
Sbjct: 564 VGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLIAHLKNTAGTDQSALRTDSTPEDLLELL 623
Query: 402 DPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
D KL +TIR AMRMLDNVID+NYYAV KA+ SN+RHRPVGLG+MGF D L M+IPY+S
Sbjct: 624 DTDKLSRTIRTAMRMLDNVIDMNYYAVAKARNSNMRHRPVGLGLMGFSDALLEMRIPYAS 683
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
A+ FAD S E+I YYA AS +LA+E+G Y S+ GSLW QG+LP DS++LL R
Sbjct: 684 PAAVAFADISQEVISYYAIEASADLAQERGSYPSFQGSLWSQGVLPIDSIELLAASR-EH 742
Query: 522 YLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ V+ S L+W LR++++K G+RNSNC+AIAPTATISNI+GVS IEP Y+NL++KSN
Sbjct: 743 GVDVDRSMRLDWNGLRDKVRK-GIRNSNCLAIAPTATISNIVGVSQGIEPIYQNLYVKSN 801
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
LSGEFT +N YLV +LK++GLWDE M+ +LKYFDG++ + RIP L+ +YA AFE P
Sbjct: 802 LSGEFTVVNSYLVHDLKRQGLWDEVMVNDLKYFDGSVLPVDRIPAALKPLYANAFETDPE 861
Query: 642 WIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
W++EA + RQKW+DQ+QSLN+Y SGKK+DETY+LAW RGLKTTYYLRS+ A A+KS
Sbjct: 862 WLVEAAARRQKWLDQAQSLNLYFGQPSGKKIDETYRLAWKRGLKTTYYLRSLGATAAEKS 921
Query: 702 NFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ G ++N ++ G+ K C I D CE+CQ
Sbjct: 922 TVQTG--TLN----AVSGHQP--------KACAI-----DDPTCEACQ 950
>gi|372268740|ref|ZP_09504788.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas sp.
S89]
Length = 983
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/713 (62%), Positives = 564/713 (79%), Gaps = 7/713 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P Y+ TA LL+ ++ E + Q ++ YK + ++ KGI+ +LL+
Sbjct: 228 VEQEPNYTYATAFLLLDKLRSEALRFLDVAESATQQEMEGLYKPALAAYVAKGIELELLD 287
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LA F+L L A+ PE D QF YLGL+ LYDRYFLH + IR E+PQ FFMR+AMGL++
Sbjct: 288 PALASFDLEKLGEAIKPECDHQFTYLGLQTLYDRYFLHSDEIRFELPQIFFMRVAMGLAI 347
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
NE + AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ +I++N
Sbjct: 348 NEEDPNARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDN 407
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VRSLGS IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 408 AMLSKWAGGLGNDWTPVRSLGSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 467
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLFSP D PDL
Sbjct: 468 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEDKEWTLFSPADAPDL 527
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ FG +FEE Y YE GK+KL KK+ AL LWRK+L MLFETGHPWITFKDACN+R
Sbjct: 528 HDLFGDKFEERYNHYEQLAAEGKLKLHKKVRALDLWRKMLGMLFETGHPWITFKDACNLR 587
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
SPQQH G++HSSNLCTEITLNT N EI VCNLGS+NL+ H+ ++GKLD KL+ T++ A
Sbjct: 588 SPQQHAGVVHSSNLCTEITLNTKANDEIAVCNLGSVNLSQHIGEDGKLDMGKLEGTVKTA 647
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+RMLDNVIDINYY+V+ A+ SN+RHRPVGLG+MGFQD L+ I YSS EA+KFAD +ME
Sbjct: 648 VRMLDNVIDINYYSVETARQSNMRHRPVGLGLMGFQDALYKAGISYSSDEAVKFADTTME 707
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I YYA S++LA E+G Y+SY+GSLW QGILP DS+++L K RG +++ + S +L W
Sbjct: 708 AISYYAISTSSDLAAERGSYTSYEGSLWSQGILPIDSIEILAKNRGEQFIDQDTSSTLEW 767
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+R ++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YL
Sbjct: 768 DVVREKVASQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYL 827
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK +GLWD+ M+ +LKY++G++ +I RIP DL+ YATAFE+ P WI++A S RQKW
Sbjct: 828 VHDLKARGLWDKVMVNDLKYYEGSVQKIDRIPADLKAKYATAFEVEPRWIVDAASRRQKW 887
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
IDQ+QSLN+YI+ +GKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 888 IDQAQSLNLYIAGANGKKLDLTYRMAWYRGLKTTYYLRALAATTTEKSTVNTG 940
>gi|344345441|ref|ZP_08776292.1| ribonucleoside-diphosphate reductase, alpha subunit [Marichromatium
purpuratum 984]
gi|343802965|gb|EGV20880.1| ribonucleoside-diphosphate reductase, alpha subunit [Marichromatium
purpuratum 984]
Length = 955
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/756 (59%), Positives = 577/756 (76%), Gaps = 17/756 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK------EIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P Y+QV ARLL+ +++E G Q D+ +Y Y + ++ + I+ +LL
Sbjct: 210 IEREPEYNQVAARLLLDILRREALGALGLAEGVETQADLGERYGAYLAAYVARAIELELL 269
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGL 113
+P+LA F+L L AL PERDL+F YLGL+ LYDRYF+ + +R+E+PQ FFMR+AMGL
Sbjct: 270 DPELARFDLDRLGAALRPERDLEFGYLGLQTLYDRYFIRTRDAVRLELPQAFFMRVAMGL 329
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE++RE AI+FY LLSSF+FM STPTLFNS T+R QLSSCYL+TV DDL GI+ +IK
Sbjct: 330 AINEADRETRAIEFYELLSSFDFMSSTPTLFNSATLRPQLSSCYLTTVADDLDGIYSAIK 389
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+NALLSK+AGGLGNDW++VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+
Sbjct: 390 DNALLSKFAGGLGNDWSRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 449
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
CAYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFMKRV + WTLFSP + P
Sbjct: 450 CAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEDGPWTLFSPDETP 509
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
DLH+ G FE +Y YE + G++++ K + A+ LWRK+L MLFETGHPWI FKD CN
Sbjct: 510 DLHDLSGVAFERAYCDYEARAARGELRVSKTLRAVDLWRKMLGMLFETGHPWIAFKDPCN 569
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+R QH G++HSSNLCTEITL+TS EI VCNLGS+NL H+ LD +L++T+R A
Sbjct: 570 LRYTNQHAGVVHSSNLCTEITLHTSDAEIAVCNLGSVNLAAHVTAKGLDRERLRRTVRTA 629
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVID N+Y V +A+ +N RHRPVGLGIMGFQD LH + + Y+S EA++FAD+SME
Sbjct: 630 MRMLDNVIDYNFYNVPQAREANRRHRPVGLGIMGFQDALHRLGLSYASPEAVQFADRSME 689
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
++ YYA AS ELA E+GRY S++GSLW +GILP DS+ LL + RG +YL+V+ + +L+W
Sbjct: 690 VVSYYAIEASCELAAERGRYPSFEGSLWSRGILPIDSIALLAESRG-EYLQVDTTTTLDW 748
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR R+++ GMRNSNC+AIAPTATISNI+GVS SIEPTY+NL +KSNLSGEFT +N L
Sbjct: 749 NALRARVREVGMRNSNCLAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVVNPEL 808
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
+ ELK GLWDE M+ +LKY+DG+L I RIP+ L++ YATAFEI P W+IEA + RQKW
Sbjct: 809 IAELKTLGLWDEVMVNDLKYYDGSLQPIERIPETLKQRYATAFEIDPRWLIEAAARRQKW 868
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
+DQ+QSLN+Y++ SGKKLD YKLAW+RGLKTTYYLRS A + +KS D +
Sbjct: 869 LDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSQGATHVEKSTL---ADHQRAN 925
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S G + E + + C I D ECE+CQ
Sbjct: 926 RLSAVGGSYGAAE-QTPRACAI-----DDPECEACQ 955
>gi|424864058|ref|ZP_18287965.1| ribonucleoside-diphosphate reductase subunit alpha [SAR86 cluster
bacterium SAR86B]
gi|400759918|gb|EJP74096.1| ribonucleoside-diphosphate reductase subunit alpha [SAR86 cluster
bacterium SAR86B]
Length = 958
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/755 (61%), Positives = 596/755 (78%), Gaps = 11/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF-----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P YS VTAR+LM I+ E +E ++ Y + +I+KGI+ +L+
Sbjct: 209 VEKEPNYSFVTARILMDQIRSEALNFLGVAEESSYSEMEKYYPQALVAYIDKGIELDILD 268
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L F+L+ L A+ RD QF YLGL+ LYDRYF+H IR E+PQ FFMR++MGL++
Sbjct: 269 PELKTFDLAKLGAAIDHTRDNQFTYLGLQTLYDRYFIHSNNIRYELPQVFFMRVSMGLAI 328
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E NRE+ AI+FYNLLSSF++M STPTLFNSGT R QLSSCYL+TVPDDL GIFE+IK++
Sbjct: 329 EEENREERAIEFYNLLSSFDYMSSTPTLFNSGTKRPQLSSCYLTTVPDDLDGIFEAIKDD 388
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A LSK+AGGLGNDWT VR++ S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 389 ANLSKWAGGLGNDWTPVRAMNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCA 448
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV + S WTLFSP + P+L
Sbjct: 449 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVEQDSHWTLFSPNETPEL 508
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ GK FEE Y YE + + G++ FKKI A +WRK+L+MLFETGHPWITFKD+CN+R
Sbjct: 509 HDLTGKAFEEKYEEYEKKAEKGEMDQFKKIPAKEIWRKMLTMLFETGHPWITFKDSCNLR 568
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQHVG++HSSNLCTEITLNTS EI VCNLGS+NL HMK+GKLD K+K+T+ A+
Sbjct: 569 SPQQHVGVVHSSNLCTEITLNTSAGKEIAVCNLGSVNLAQHMKDGKLDEDKVKQTVSTAI 628
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVI+INYY+V AK SNL+HRP+GLG+MGFQD L++ IPY S++A+ FAD+SME+
Sbjct: 629 RMLDNVININYYSVDTAKDSNLKHRPIGLGLMGFQDALYMQDIPYCSEDAVTFADRSMEL 688
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA +ASTELA+E+G Y SY+GSLW QGILP+DS+K+L + RGS++++VN E+L+W+
Sbjct: 689 ISYYAIHASTELAKERGAYESYEGSLWSQGILPKDSIKILRENRGSEFIQVNEDETLDWE 748
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ K GMRNSN +AIAPTATISNI GV+ SIEPTY+NL++KSNLSGEFT +N +LV
Sbjct: 749 TLRKKVLKDGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGEFTIVNPHLV 808
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK+ LWD+ MI +LKYF+G+LS ISRIPD+++K+++TAFE+ P +I+E+ S RQKWI
Sbjct: 809 RKLKELNLWDDVMINDLKYFEGSLSTISRIPDEIKKLFSTAFEVEPRYIVESASRRQKWI 868
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+N GKKLD TY++AW GLKTTYYLRS++A +KS G NL+
Sbjct: 869 DQAQSLNLYINNADGKKLDITYRMAWYSGLKTTYYLRSLAATTTEKSTVNQG----NLNA 924
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S K + E+ ++D +CE+CQ
Sbjct: 925 VSAKVESNENMELGAPAPVPEACSLDDP-DCEACQ 958
>gi|418377768|ref|ZP_12965805.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Burkholderia pseudomallei 354a]
gi|385378030|gb|EIF82548.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Burkholderia pseudomallei 354a]
Length = 674
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/609 (72%), Positives = 525/609 (86%), Gaps = 6/609 (0%)
Query: 103 QFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP 162
Q FFMR+AMGL+LNE +RE AI+FYN+LSSF+FM STPTLFNSGT RSQLSSCYL+TV
Sbjct: 1 QAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVA 60
Query: 163 DDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVA 222
DDL GI+E++K+NALLSK+AGGLGNDWT+VR+LGS IKGTNG+SQGV+PFLKVVND AVA
Sbjct: 61 DDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVA 120
Query: 223 VNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKS 282
VNQGGKRKGA+CAYLE+WH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++ +
Sbjct: 121 VNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGA 180
Query: 283 TWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETG 342
WTLFSP PDLH+KFG EFE +Y+ YE + G+IKLFKKI A LWRK+L MLFETG
Sbjct: 181 DWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETG 240
Query: 343 HPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG--- 399
HPWITFKD CN+RSPQQHVG++HSSNLCTEITLNTS EI VCNLGS+NL H+
Sbjct: 241 HPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADG 300
Query: 400 --KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKI 457
LD KLK+T+ +AMRMLDNVIDINYYAV KA+ SNL+HRPVGLGIMGFQDCLH+++
Sbjct: 301 SYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRT 360
Query: 458 PYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKE 517
PY+S EA++FAD+SME +CYYAY+ASTELAEE+GRYSSY GSLWD+GILPQD+LKLL +
Sbjct: 361 PYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEA 420
Query: 518 RGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLH 577
RG Y++V+ S +L+W LR RI FGMRNSNCVAIAPTATISNIIGVSA IEPT++NL+
Sbjct: 421 RGG-YVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLY 479
Query: 578 IKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFE 637
+KSNLSGEFT +N YLV++LK++GLWDE M+A+LKYFDG LS+I RIP DLR IYATAFE
Sbjct: 480 VKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFE 539
Query: 638 ISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANY 697
+ P W++EA S RQKWIDQ+QSLNIY++ SGKKLDE YKLAWLRGLKTTYYLR+++A +
Sbjct: 540 VDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATH 599
Query: 698 AKKSNFEMG 706
+KS G
Sbjct: 600 VEKSTVAHG 608
>gi|262369329|ref|ZP_06062657.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
johnsonii SH046]
gi|381198323|ref|ZP_09905662.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
lwoffii WJ10621]
gi|262315397|gb|EEY96436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
johnsonii SH046]
Length = 943
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/767 (59%), Positives = 584/767 (76%), Gaps = 28/767 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + + E F+ KGI+ LL+P+L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVATGLTFLGLSEDTAEGDALETFLKKGIELDLLSPEL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H +G+R E+PQ FFMR++MGLSLNE+
Sbjct: 243 LNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSMGLSLNEA 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
NRE+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 NREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 MGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNTSK+EI VCNLGSINL H++ G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLVQHVQGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M++ Y S A+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMQLAYGSDAAVDFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G Y ++ GSLWDQGILP DSL L+ K R + +V+ ++ L+W LR
Sbjct: 662 AISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +ISRIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 DRGLWDSVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISI 717
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G +++V ++
Sbjct: 842 SLNLYISGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKPATVTA 901
Query: 718 KGYNKNLQEIKNN---------------KKCLINSEINDVNECESCQ 749
QE+K C I D +CE+CQ
Sbjct: 902 APVAAVAQEVKPEVVAEDEGFGQAAPVPMACSI-----DNPDCEACQ 943
>gi|315122311|ref|YP_004062800.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495713|gb|ADR52312.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 934
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/755 (61%), Positives = 583/755 (77%), Gaps = 16/755 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P Y++VT RLL+ +++EV K+ ++ YK YF ++I +GI LL
Sbjct: 190 IEREPNYAKVTTRLLLDKLRREVLTAIYKTPKKATHQEMSNLYKNYFLQYIEEGIKAHLL 249
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ EF+LS L+NAL P+RDL F YLGL+ LYDRYFLH++G R EMPQ FFMR+AMG++
Sbjct: 250 AESMKEFDLSYLANALKPDRDLMFEYLGLQTLYDRYFLHVDGSRFEMPQAFFMRVAMGIA 309
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +EK A++FYNL+SSF+FMCSTPTLFN+GT QLSSC+L+TVPDDL IFE+IK+
Sbjct: 310 LKEPEKEKRAVEFYNLISSFHFMCSTPTLFNAGTRHPQLSSCFLTTVPDDLGDIFEAIKD 369
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LGS I+GTNG+SQGVIPFLKV ND AVAVNQGGKRKGA+C
Sbjct: 370 NALLAKYSGGLGNDWTSVRGLGSHIQGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 429
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF+ LRKNTGDDRRRTHDMN A WVPDLFMKRV K WTLFSP +V D
Sbjct: 430 AYLETWHIDIEEFLNLRKNTGDDRRRTHDMNTANWVPDLFMKRVEKNEQWTLFSPDEVGD 489
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G +FE++Y YE + + G+IKLF+KI+A+ LWRK+L+M+FETGHPWITFKD CNI
Sbjct: 490 LHHLYGHDFEKAYSNYEKKAERGEIKLFRKIAAVSLWRKMLTMVFETGHPWITFKDPCNI 549
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG + SNLCTEITLN SK+E+ VCNLGSINL H+ LD KL TI A+
Sbjct: 550 RSPQQHVGNVLCSNLCTEITLNISKDEVAVCNLGSINLAAHLTENGLDYDKLANTIHTAV 609
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID+N YA+KKA+ SN +HRP+GLG+MGFQ LH ++IPY S EA+ FADQSME
Sbjct: 610 RMLDNVIDVNRYAIKKAENSNRKHRPIGLGLMGFQSALHALRIPYESVEAVDFADQSMEF 669
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A AST LAEE+G YS++ GSLW +GILP DSL+LLE+ R +++ S L W
Sbjct: 670 ISFHAISASTNLAEERGPYSTFKGSLWSKGILPIDSLQLLEEVRDK--CEIDKSSRLGWD 727
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSNC+AIAPTATISNI GVS SIEP+Y+NL +KSN+SG+FT +N LV
Sbjct: 728 VLRERVKSVGMRNSNCMAIAPTATISNICGVSQSIEPSYQNLFVKSNMSGDFTIVNSCLV 787
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWDE MI++LK++DG++ I RIP+DL+K++ATAFEI P W+I+A S RQKWI
Sbjct: 788 NDLKARGLWDEVMISDLKHYDGSIGNIERIPEDLKKLHATAFEIDPIWLIKAASRRQKWI 847
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y+S+ SGKKLD Y+ +WL GLKTTYYLRS SA + +KS + +N
Sbjct: 848 DQAQSLNLYLSDPSGKKLDFIYRQSWLMGLKTTYYLRSRSATHVEKSTLKEVDGKLN--- 904
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S+ + N E+ + + +S + ECE CQ
Sbjct: 905 -SVPIMDHNSSELLSTPQSSCDSGV----ECEVCQ 934
>gi|270156778|ref|ZP_06185435.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
longbeachae D-4968]
gi|289164773|ref|YP_003454911.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
longbeachae NSW150]
gi|269988803|gb|EEZ95057.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
longbeachae D-4968]
gi|288857946|emb|CBJ11806.1| putative ribonucleoside-diphosphate reductase, alpha subunit
[Legionella longbeachae NSW150]
Length = 941
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/707 (64%), Positives = 570/707 (80%), Gaps = 6/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK-----YKEYFSKFINKGIDNKLLN 55
+EK+P Y+ V+ARLL+ C++ E K + D Y YF ++ GI +L+
Sbjct: 206 VEKEPNYTYVSARLLLDCLRIEALHKLGIEADATFDEMSQLYPAYFKIYVAHGIKQGMLD 265
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
K+A+F+L L ALLPERD++F YL L+ LYDRYF+H +GIR E+PQ FFMR+AMGL++
Sbjct: 266 EKMADFDLEKLGKALLPERDMKFTYLSLQTLYDRYFIHDQGIRYELPQAFFMRVAMGLAI 325
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++ + AI+FY LLSSF++M STPTLFNSGTIR QLSSCYL+TVPD L GI+ +IK+N
Sbjct: 326 REKDKNEKAIEFYQLLSSFDYMSSTPTLFNSGTIRPQLSSCYLTTVPDHLDGIYSAIKDN 385
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSKYAGGLGNDWT VR++GS IKGTNG+SQGV+PFL V + AVAVNQGGKRKGA+CA
Sbjct: 386 ALLSKYAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAVCA 445
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+EEF+ELRKNTGDDRRRTHDMN A+W+PDLFM RV + + WTLFSP +VP+L
Sbjct: 446 YLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMMRVREDADWTLFSPDEVPEL 505
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H++FGK FE Y YE + G +K K +SA+ LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 506 HDQFGKAFEALYNKYEEKAHQGLMKNVKTVSAVKLWRKMLSMLFETGHPWMTFKDPCNLR 565
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS+ EI VCNLGSINL H+KNGKLD KLK+TI+ A+R
Sbjct: 566 SPQQHCGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDIEKLKQTIKTAVR 625
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRPVGLG+MGFQD L+ +KI Y+S+EA++FAD SME+I
Sbjct: 626 MLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYELKIDYASEEAVEFADSSMELI 685
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G YSSY+GSLW +GILP DS+ LL++ R +KYL+ + S+ L+W+
Sbjct: 686 SYYAIEASCDLAKERGSYSSYEGSLWSKGILPIDSINLLQQAR-NKYLEQDRSQRLDWES 744
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR +++ GMRNSN +AIAPTATISNI GV+ SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 745 LRIKVRTQGMRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINPYLVA 804
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK LWDE M+ +LKYF+G++ ISRIP DL+K YAT+FEI P W+++A S RQKWID
Sbjct: 805 DLKALELWDEVMVNDLKYFNGSVQPISRIPADLKKRYATSFEIDPIWLVDAASRRQKWID 864
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
Q+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS
Sbjct: 865 QAQSLNIYMAEPSGKKLDQLYMHAWIRGLKTTYYLRSMGASNAEKST 911
>gi|348171940|ref|ZP_08878834.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharopolyspora spinosa NRRL 18395]
Length = 795
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/754 (58%), Positives = 572/754 (75%), Gaps = 22/754 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P YSQVTARLL+ +++E +E Q + Y YF+ ++ +G++ + L+
Sbjct: 59 IETEPNYSQVTARLLLDRMRREALSFLGEPQEADQEQMRDHYPAYFADYVRRGVELERLD 118
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P+L FNL L AL+PERDL F +LGL+ LYDRYFLH +G R E+PQ FFMR+AMGL+L
Sbjct: 119 PELGFFNLDRLGRALVPERDLTFGFLGLQTLYDRYFLHEDGTRFELPQAFFMRVAMGLAL 178
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +RE AI+FY+LLS+F+FMCSTPTLFN+GT R QLSSC+L+TV DDL GIF SI N
Sbjct: 179 REDDREARAIEFYHLLSTFDFMCSTPTLFNAGTTRPQLSSCFLTTVDDDLSGIFHSISNN 238
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A LSKYAGGLGNDWT VR +G+ I GTNG+SQGV+PFLK+ ND AVAVNQGG+RKGA+CA
Sbjct: 239 ARLSKYAGGLGNDWTPVRGIGAHINGTNGKSQGVVPFLKIANDTAVAVNQGGRRKGAVCA 298
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWH+D+EEF++LRKNTGDDRRRTHDMN A WVPD F++RV WTLFSP + PDL
Sbjct: 299 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEQWTLFSPDETPDL 358
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +GK F E Y YE G+I++F+++ A+ LWR++L+MLFETGHPWITFKD CN+R
Sbjct: 359 HDLYGKAFAERYRAYEQAADRGEIRVFRRVRAVELWRRMLTMLFETGHPWITFKDPCNLR 418
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS +E+ VCNLGSINL H+ +D KL++T R A+R
Sbjct: 419 SPQQHSGVVHSSNLCTEITLNTSSDEVAVCNLGSINLARHVDADGIDAAKLERTTRTAVR 478
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDIN+Y + +A+ SNLRHRP+GLG+MGF D L +IP SS+ A++FAD+SME I
Sbjct: 479 MLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFADALFTQRIPVSSEAAVEFADRSMEQI 538
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS+ELA E+GRY S+DGSLW+QG+LP DSL LL RG + ++ S +L+W+
Sbjct: 539 SYHAIAASSELAAERGRYESFDGSLWNQGVLPIDSLDLLADARGGD-VDLDRSSTLDWEA 597
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R++ GMRNSN +AIAPTATISNI GV+ SIEP YRNL++K+N+SG+FT +N +LV
Sbjct: 598 LRERVRTVGMRNSNVMAIAPTATISNICGVNQSIEPVYRNLYVKANMSGDFTVVNPHLVA 657
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK+ GLWDE+MIA+LK+ DG+L I RIP L+++YATAFEI P W++EA + RQKWID
Sbjct: 658 DLKQAGLWDEAMIADLKFHDGSLLPIERIPQQLKELYATAFEIEPRWLVEAAARRQKWID 717
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
Q+QSLN+Y+S +G+ LDE Y+LAW +GLKTTYYLRS SA + +KS
Sbjct: 718 QAQSLNLYVSRPNGRTLDELYRLAWRKGLKTTYYLRSTSATHVEKS-------------- 763
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+++G + L + S + D +CE+CQ
Sbjct: 764 TLRGTDGKLNAVPTAPTGTACS-VED-PDCEACQ 795
>gi|421650893|ref|ZP_16091266.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC0162]
gi|425747585|ref|ZP_18865588.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-348]
gi|445457674|ref|ZP_21446662.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC047]
gi|408509658|gb|EKK11329.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC0162]
gi|425493503|gb|EKU59735.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-348]
gi|444776291|gb|ELX00337.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC047]
Length = 944
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|421663679|ref|ZP_16103823.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC110]
gi|445487511|ref|ZP_21457782.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii AA-014]
gi|408713018|gb|EKL58193.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC110]
gi|444768401|gb|ELW92616.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii AA-014]
Length = 944
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|421809628|ref|ZP_16245461.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC035]
gi|410413988|gb|EKP65795.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC035]
Length = 943
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|169797063|ref|YP_001714856.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AYE]
gi|184157024|ref|YP_001845363.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ACICU]
gi|213156531|ref|YP_002318192.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB0057]
gi|215484524|ref|YP_002326759.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii AB307-0294]
gi|239501300|ref|ZP_04660610.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB900]
gi|260555645|ref|ZP_05827865.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|301345631|ref|ZP_07226372.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB056]
gi|301512782|ref|ZP_07238019.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB058]
gi|301596293|ref|ZP_07241301.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB059]
gi|332852153|ref|ZP_08433980.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii 6013150]
gi|332867552|ref|ZP_08437705.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii 6013113]
gi|332872598|ref|ZP_08440566.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii 6014059]
gi|384130703|ref|YP_005513315.1| nrdA [Acinetobacter baumannii 1656-2]
gi|384141990|ref|YP_005524700.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
baumannii MDR-ZJ06]
gi|385236292|ref|YP_005797631.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii TCDC-AB0715]
gi|387125061|ref|YP_006290943.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Acinetobacter baumannii
MDR-TJ]
gi|403673287|ref|ZP_10935588.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
sp. NCTC 10304]
gi|407931630|ref|YP_006847273.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii TYTH-1]
gi|416145354|ref|ZP_11600393.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB210]
gi|417544082|ref|ZP_12195168.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC032]
gi|417548718|ref|ZP_12199799.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-18]
gi|417553465|ref|ZP_12204534.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-81]
gi|417560452|ref|ZP_12211331.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC137]
gi|417565176|ref|ZP_12216050.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC143]
gi|417570545|ref|ZP_12221402.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC189]
gi|417573131|ref|ZP_12223985.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Canada BC-5]
gi|417577645|ref|ZP_12228490.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-17]
gi|417870671|ref|ZP_12515626.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH1]
gi|417872421|ref|ZP_12517323.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH2]
gi|417876818|ref|ZP_12521568.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH3]
gi|417881621|ref|ZP_12525934.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH4]
gi|421201407|ref|ZP_15658566.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC109]
gi|421204645|ref|ZP_15661763.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AC12]
gi|421456517|ref|ZP_15905859.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-123]
gi|421534674|ref|ZP_15980945.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AC30]
gi|421621934|ref|ZP_16062845.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC074]
gi|421625034|ref|ZP_16065890.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC098]
gi|421627999|ref|ZP_16068785.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC180]
gi|421632724|ref|ZP_16073371.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-13]
gi|421642485|ref|ZP_16083001.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-235]
gi|421649045|ref|ZP_16089441.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-251]
gi|421655829|ref|ZP_16096143.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-72]
gi|421659041|ref|ZP_16099267.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-83]
gi|421667566|ref|ZP_16107632.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC087]
gi|421670410|ref|ZP_16110408.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC099]
gi|421675150|ref|ZP_16115075.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC065]
gi|421677163|ref|ZP_16117056.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC111]
gi|421686844|ref|ZP_16126588.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-143]
gi|421692756|ref|ZP_16132406.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-116]
gi|421696464|ref|ZP_16136050.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-692]
gi|421699198|ref|ZP_16138733.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-58]
gi|421702437|ref|ZP_16141919.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ZWS1122]
gi|421706175|ref|ZP_16145593.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ZWS1219]
gi|421788140|ref|ZP_16224450.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-82]
gi|421792968|ref|ZP_16229106.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-2]
gi|421795235|ref|ZP_16231319.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-21]
gi|421799027|ref|ZP_16235035.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Canada BC1]
gi|421803401|ref|ZP_16239319.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-A-694]
gi|424053542|ref|ZP_17791074.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab11111]
gi|424061002|ref|ZP_17798493.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab33333]
gi|424062801|ref|ZP_17800286.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab44444]
gi|425752584|ref|ZP_18870491.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-113]
gi|445449207|ref|ZP_21444202.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-A-92]
gi|445468731|ref|ZP_21450944.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC338]
gi|445480431|ref|ZP_21455506.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-78]
gi|169149990|emb|CAM87884.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
baumannii AYE]
gi|183208618|gb|ACC56016.1| Ribonucleotide reductase, alpha subunit [Acinetobacter baumannii
ACICU]
gi|193076531|gb|ABO11187.2| ribonucleoside diphosphate reductase alpha subunit [Acinetobacter
baumannii ATCC 17978]
gi|213055691|gb|ACJ40593.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
baumannii AB0057]
gi|213986949|gb|ACJ57248.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii AB307-0294]
gi|260410556|gb|EEX03854.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|322506923|gb|ADX02377.1| nrdA [Acinetobacter baumannii 1656-2]
gi|323516790|gb|ADX91171.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii TCDC-AB0715]
gi|332729525|gb|EGJ60864.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii 6013150]
gi|332733969|gb|EGJ65114.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii 6013113]
gi|332739127|gb|EGJ69986.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii 6014059]
gi|333366900|gb|EGK48914.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB210]
gi|342227413|gb|EGT92347.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH1]
gi|342233591|gb|EGT98307.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH2]
gi|342236993|gb|EGU01488.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH3]
gi|342238680|gb|EGU03108.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH4]
gi|347592483|gb|AEP05204.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
baumannii MDR-ZJ06]
gi|385879553|gb|AFI96648.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Acinetobacter baumannii
MDR-TJ]
gi|395523034|gb|EJG11123.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC137]
gi|395550993|gb|EJG17002.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC189]
gi|395556932|gb|EJG22933.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC143]
gi|395563439|gb|EJG25092.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC109]
gi|395570866|gb|EJG31528.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-17]
gi|398325798|gb|EJN41958.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AC12]
gi|400208699|gb|EJO39669.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Canada BC-5]
gi|400210945|gb|EJO41909.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-123]
gi|400381970|gb|EJP40648.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC032]
gi|400389017|gb|EJP52089.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-18]
gi|400389882|gb|EJP56929.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-81]
gi|404559401|gb|EKA64658.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-116]
gi|404561644|gb|EKA66870.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-692]
gi|404567307|gb|EKA72433.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-143]
gi|404571825|gb|EKA76874.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-58]
gi|404667680|gb|EKB35593.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab11111]
gi|404668954|gb|EKB36863.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab33333]
gi|404675171|gb|EKB42887.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab44444]
gi|407194179|gb|EKE65323.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ZWS1122]
gi|407194607|gb|EKE65746.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ZWS1219]
gi|407900211|gb|AFU37042.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii TYTH-1]
gi|408506852|gb|EKK08556.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-72]
gi|408513212|gb|EKK14846.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-235]
gi|408514294|gb|EKK15901.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-251]
gi|408696697|gb|EKL42226.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC074]
gi|408699459|gb|EKL44935.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC098]
gi|408708432|gb|EKL53706.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-13]
gi|408708520|gb|EKL53793.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC180]
gi|408708980|gb|EKL54242.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-83]
gi|409987340|gb|EKO43522.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AC30]
gi|410382697|gb|EKP35236.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC065]
gi|410383746|gb|EKP36266.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC087]
gi|410385089|gb|EKP37584.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC099]
gi|410393441|gb|EKP45794.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC111]
gi|410398228|gb|EKP50450.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-2]
gi|410402122|gb|EKP54251.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-21]
gi|410403711|gb|EKP55789.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-82]
gi|410411238|gb|EKP63118.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Canada BC1]
gi|410412992|gb|EKP64836.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-A-694]
gi|425498815|gb|EKU64881.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-113]
gi|444756950|gb|ELW81486.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-A-92]
gi|444771447|gb|ELW95576.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-78]
gi|444774966|gb|ELW99037.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC338]
gi|452948351|gb|EME53830.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii MSP4-16]
Length = 944
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|388456663|ref|ZP_10138958.1| ribonucleotide-diphosphate reductase subunit alpha [Fluoribacter
dumoffii Tex-KL]
Length = 941
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/711 (63%), Positives = 566/711 (79%), Gaps = 6/711 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK-----YKEYFSKFINKGIDNKLLN 55
+EK+P Y+ V+ARLL+ ++ E K Q D Y YF +I GI +L+
Sbjct: 206 VEKEPNYTYVSARLLLDSLRMEALSKLEIQSDATFDEMSALYPSYFKLYIAHGIKQGMLD 265
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
K+A+F+L L ALLPERD++F+YL L+ LYDRYF+H G+R E+PQ FFMR+AMGL+L
Sbjct: 266 AKMADFDLEKLGKALLPERDMKFSYLSLQTLYDRYFIHEHGVRYELPQAFFMRVAMGLAL 325
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E ++E AI+FY LLSSF++M STPTLFNSGTIR QLSSCYL+TVPD L GI+ +IK+N
Sbjct: 326 REKDKEDKAIEFYQLLSSFDYMSSTPTLFNSGTIRPQLSSCYLTTVPDHLDGIYSAIKDN 385
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
ALLSKYAGGLGNDWT VR++GS IKGTNG+SQGV+PFL V + AVAVNQGGKRKGA+CA
Sbjct: 386 ALLSKYAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAVCA 445
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+EEF+ELRKNTGDDRRRTHDMN A+W+PDLFM RV + WTLFSP +VPDL
Sbjct: 446 YLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMVRVRENGDWTLFSPDEVPDL 505
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+++GK FE Y YE + G IK K +SA+ LWRK+LSMLFETGHPW+TFKD CN+R
Sbjct: 506 HDQYGKAFETLYREYEEKAHQGLIKNAKTVSAVKLWRKMLSMLFETGHPWMTFKDPCNLR 565
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS+ EI VCNLGSINL H+K GKLD KL++TI+ A+R
Sbjct: 566 SPQQHTGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKKGKLDTDKLRRTIKTAIR 625
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDINYY+V +A+ SNL+HRP+GLG+MGFQD L+ +KI Y+S EA++FAD SME+I
Sbjct: 626 MLDNVIDINYYSVPQARNSNLKHRPIGLGLMGFQDALYELKIDYASPEAVEFADSSMELI 685
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
YYA AS +LA+E+G YS+Y+GSLW +GILP DS+ LL++ R KYL+ + S+ L+W+
Sbjct: 686 SYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSISLLQQAR-DKYLEQDRSQRLDWES 744
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR +++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 745 LRIKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVA 804
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK LWDE M+ +LKYF+G++ ISRIP +L++ YAT+FEI P W+++A S RQKWID
Sbjct: 805 DLKALNLWDEVMVNDLKYFNGSVQPISRIPAELKQRYATSFEIDPIWLVDAASRRQKWID 864
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
Q+QSLNIY++ SGKKLD+ Y AW+RGLKTTYYLRS+ A+ A+KS G
Sbjct: 865 QAQSLNIYMAQPSGKKLDQLYMHAWMRGLKTTYYLRSLGASNAEKSTVTDG 915
>gi|424056802|ref|ZP_17794319.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
nosocomialis Ab22222]
gi|425740284|ref|ZP_18858458.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-487]
gi|407440335|gb|EKF46852.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
nosocomialis Ab22222]
gi|425495051|gb|EKU61241.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-487]
Length = 944
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 565/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 DRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|169634185|ref|YP_001707921.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii SDF]
gi|169152977|emb|CAP02025.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
baumannii]
Length = 943
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+KFAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVKFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN LV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPCLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|262373380|ref|ZP_06066659.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
junii SH205]
gi|262313405|gb|EEY94490.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
junii SH205]
Length = 944
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/706 (63%), Positives = 562/706 (79%), Gaps = 3/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARLL C + G E + + F+ KGI+ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL--CNELVGTGLEFLGLSTDTSENDALEPFLKKGIELDLLSPDLLN 244
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ LS A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE N+
Sbjct: 245 FDLAKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEENK 304
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+LSK
Sbjct: 305 EERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAMLSK 364
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 365 WAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 424
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+ G
Sbjct: 425 HLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDLTG 484
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF E Y YE K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 485 AEFAERYTHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS++EI VCNLGSINL H++ G LD KL +TI+ A+RMLDNV
Sbjct: 544 VGVVHSSNLCTEITLNTSQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YYA
Sbjct: 604 IDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYYAI 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
S++LA E+G YS++ GSLWDQGILP DSL+L+ K R + +V+ ++ L+W LR ++
Sbjct: 664 QTSSDLALERGAYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLDWDSLRAKV 723
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK++
Sbjct: 724 QKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALKER 783
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+QSL
Sbjct: 784 GLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVETRWIVDAASRRQKWIDQAQSL 843
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
N+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 844 NLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|406035942|ref|ZP_11043306.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
parvus DSM 16617 = CIP 108168]
Length = 944
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/706 (63%), Positives = 561/706 (79%), Gaps = 3/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARLL C + G E + + F+ KGI+ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL--CNELVGTGLEFLGLSTDTLESDALEPFLKKGIELDLLSPDLLN 244
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ LS A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE N+
Sbjct: 245 FDLAKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEENK 304
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+LSK
Sbjct: 305 EDRAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAMLSK 364
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 365 WAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 424
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+ G
Sbjct: 425 HLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDLTG 484
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF E Y YE K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 485 AEFAERYTHYEAVAKEQNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNTS++EI VCNLGSINL H++ G LD KL +TI+ A+RMLDNV
Sbjct: 544 VGVVHSSNLCTEITLNTSQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YYA
Sbjct: 604 IDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYYAI 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
S++LA E+G YS++ GSLWDQGILP DSL+L+ K R + +V+ ++ L+W LR ++
Sbjct: 664 QTSSDLALERGAYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLDWDSLRAKV 723
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK++
Sbjct: 724 QKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALKER 783
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+QSL
Sbjct: 784 GLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQSL 843
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
N+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 844 NLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|260551038|ref|ZP_05825243.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
gi|260405986|gb|EEW99473.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
Length = 944
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/708 (62%), Positives = 565/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVRGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 DRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|160872690|ref|ZP_02062822.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Rickettsiella grylli]
gi|159121489|gb|EDP46827.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
reductase) [Rickettsiella grylli]
Length = 946
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/758 (59%), Positives = 580/758 (76%), Gaps = 33/758 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK-------YKEYFSKFINKGIDNKL 53
+E DP Y+ TAR L+ + ++ + + +++P+ Y YF +I +GI +L
Sbjct: 213 VEHDPQYTYATARFLL----RTLYAEALHFLELPLHTHRHSGIYSHYFQHYIKRGIQLEL 268
Query: 54 LNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGL 113
L+P+L F+L LS ALLPERD QF YLGL+ LYDRYFLH + IR E+PQ FFMR+AMGL
Sbjct: 269 LDPQLHTFDLEQLSQALLPERDQQFTYLGLQTLYDRYFLHADHIRFELPQAFFMRVAMGL 328
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
+ +ESN+ AI+FY+LLSSF++M STPTLFNSGT+R QLSSC+L+TV DDL I+ +IK
Sbjct: 329 AQHESNKNDRAIEFYHLLSSFDYMASTPTLFNSGTLRPQLSSCFLTTVTDDLDHIYSAIK 388
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+NALLSK+AGGLGNDWT VR++G+ IKGTNG+S GV+PFL V N AVAVNQGGKRKGA+
Sbjct: 389 DNALLSKFAGGLGNDWTPVRAMGARIKGTNGKSLGVVPFLNVANASAVAVNQGGKRKGAV 448
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
CAYLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKR++K WTLFSP + P
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFSPDETP 508
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
DLH+ FG FEE Y YE + G+IK FK I A LWRK+LS+LFETGHPWITFKD CN
Sbjct: 509 DLHDAFGSAFEEKYQAYEAKALRGEIKNFKTIPAATLWRKMLSLLFETGHPWITFKDPCN 568
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRI 412
+RSPQQHVG IHSSNLCTEITLNTS +EI VCNLGSINL H+ ++G+++ KL++TIR
Sbjct: 569 LRSPQQHVGTIHSSNLCTEITLNTSIDEIAVCNLGSINLPQHLTESGEIEKTKLRQTIRT 628
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVIDINYY V +A+ SNL+HRP+GLG+MGFQD L+ +++PY+S AI FADQ+M
Sbjct: 629 AIRMLDNVIDINYYTVPQARRSNLKHRPIGLGLMGFQDALYQLRLPYASDAAITFADQTM 688
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E+I YYA AS++LA E+G Y S+ GSLW QG+LP DS+ L+K RG ++L + + L+
Sbjct: 689 ELISYYAIEASSDLAHERGAYESFPGSLWSQGVLPLDSIARLQKARG-EFLDQDRTARLD 747
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR ++ GMR+SNC+AIAPTATISNI GVS SIEPTY+NL +KSN+SGEFT IN Y
Sbjct: 748 WDTLRKKVMH-GMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFTMINPY 806
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
L+ +LK GLWD M+ +LKY+DG+L +I RIPD L+++YATAFEI +W++EAGS RQK
Sbjct: 807 LINDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAGSRRQK 866
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVN 711
WIDQSQSLN+Y+++ SGKKLDE YK WL+GLKT+YYLR++ A + +K+ ++SV+
Sbjct: 867 WIDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTSYYLRTMGATHTEKATLAKSHLNSVH 926
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ ++ C I +CESCQ
Sbjct: 927 MNTVATPA-------------CSIVDP-----DCESCQ 946
>gi|445404933|ref|ZP_21431070.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-57]
gi|444782251|gb|ELX06160.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-57]
Length = 944
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G +F E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAKFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|126640805|ref|YP_001083789.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ATCC 17978]
Length = 885
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 128 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 183
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 184 LKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 243
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 244 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 303
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 304 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 363
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 364 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 423
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 424 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 482
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 483 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 542
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 543 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 602
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 603 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRA 662
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 663 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 722
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 723 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 782
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 783 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 830
>gi|445432867|ref|ZP_21439540.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC021]
gi|444758205|gb|ELW82707.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC021]
Length = 944
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/708 (62%), Positives = 564/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----RDELVSTGLAFLGLPADTAENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ + PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LKFDLEKLAATIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 DRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|331006662|ref|ZP_08329943.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[gamma proteobacterium IMCC1989]
gi|330419530|gb|EGG93915.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[gamma proteobacterium IMCC1989]
Length = 963
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/755 (59%), Positives = 574/755 (76%), Gaps = 15/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+EK+P YS TARLL ++ E G ++ ++ Y + +I KGI+ +LL
Sbjct: 218 VEKEPNYSYATARLLQDKLRAEALGFLGIAEQATHHEMAHYYAQALPAYIEKGIELELLA 277
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L F++ L AL RD QF YLGL+ LYDRYF+H +RIE+PQ FFMR+AMGL++
Sbjct: 278 PSLRNFDIPALGKALDHTRDSQFTYLGLQTLYDRYFIHSNDVRIELPQIFFMRVAMGLAV 337
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + AI+FY LLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL+GI+ ++++N
Sbjct: 338 EEDKPTERAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAMQDN 397
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CA
Sbjct: 398 AMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCA 457
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV K WTLF+P + PDL
Sbjct: 458 YLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDKKEWTLFTPSEAPDL 517
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ G FE Y YE G+IK FK+I A LWRK+L MLFETGHPWITFKD+CN+R
Sbjct: 518 HDLCGTAFETRYEEYERMADRGEIKHFKRIPAESLWRKMLGMLFETGHPWITFKDSCNLR 577
Query: 356 SPQQHVGIIHSSNLCTEITLNTSK-NEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
SPQQHVG+IHSSNLCTEITLNTS +EI VCNLGS+NL H++NG+L+ KL+ T+ A+
Sbjct: 578 SPQQHVGVIHSSNLCTEITLNTSAGDEIAVCNLGSVNLAQHIENGELNTTKLEATVNTAV 637
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYYAV+ A+ SN+RHRP+GLG+MGFQD L+ YSS +A++FAD+SME
Sbjct: 638 RMLDNVIDINYYAVEAARTSNMRHRPIGLGLMGFQDALYKQGFAYSSDQAVEFADRSMEA 697
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS+ LA E+G+Y +++GSLW +G LP DS++ L K+RG KY++++ S++L+W
Sbjct: 698 ISYFAINASSNLAAERGQYPTFEGSLWSKGELPIDSIETLVKQRGEKYIEMDRSQTLDWS 757
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR++++K GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT +N YL+
Sbjct: 758 SLRSKVQKQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLI 817
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LKK+ LWD M+ +LKY++G++ ++ RIP DL+ +YATAFE+ P WI+ A S RQKW+
Sbjct: 818 HDLKKRDLWDAVMVNDLKYYEGSVQKVERIPADLKALYATAFEVEPRWIVSAASRRQKWL 877
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+YI+ +GKKLD TY++AW GLKTTYYLR++SA +KS G L+
Sbjct: 878 DQAQSLNLYIAGANGKKLDVTYRMAWYSGLKTTYYLRALSATTTEKSTVSGG----TLNA 933
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S + K C I D +CE+CQ
Sbjct: 934 VSSNAESAAPVAAAVPKACSI-----DEPDCEACQ 963
>gi|294649453|ref|ZP_06726878.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
haemolyticus ATCC 19194]
gi|292824658|gb|EFF83436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
haemolyticus ATCC 19194]
Length = 944
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/706 (62%), Positives = 563/706 (79%), Gaps = 3/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARLL C + G E + + F+ KGI+ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL--CNELVSTGLEFLGLPTDTLEGDALETFLKKGIELDLLSPDLLN 244
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE N+
Sbjct: 245 FDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEENK 304
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+LSK
Sbjct: 305 EERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAMLSK 364
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 365 WAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 424
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+ G
Sbjct: 425 HLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDLTG 484
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF E Y YE K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 485 AEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLDNV
Sbjct: 544 VGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YYA
Sbjct: 604 IDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYYAI 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
S++LA E+G YS+++GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR ++
Sbjct: 664 QTSSDLALERGAYSTFEGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRAKV 723
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK++
Sbjct: 724 QKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALKER 783
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+QSL
Sbjct: 784 GLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQSL 843
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
N+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 844 NLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|226953557|ref|ZP_03824021.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
sp. ATCC 27244]
gi|226835694|gb|EEH68077.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
sp. ATCC 27244]
Length = 944
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/706 (62%), Positives = 562/706 (79%), Gaps = 3/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARLL C + G E + + F+ KGI+ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL--CNELVSTGLEFLGLPTDTLEGDALETFLKKGIELDLLSPDLLN 244
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE N+
Sbjct: 245 FDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEENK 304
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+LSK
Sbjct: 305 EERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAMLSK 364
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 365 WAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 424
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+ G
Sbjct: 425 HLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDLTG 484
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF E Y YE K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 485 AEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLDNV
Sbjct: 544 VGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YYA
Sbjct: 604 IDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYYAI 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR ++
Sbjct: 664 QTSSDLALERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRAKV 723
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK++
Sbjct: 724 QKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALKER 783
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+QSL
Sbjct: 784 GLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQSL 843
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
N+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 844 NLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|406040981|ref|ZP_11048336.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
ursingii DSM 16037 = CIP 107286]
Length = 941
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/764 (59%), Positives = 585/764 (76%), Gaps = 24/764 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E +P Y+ VTARLL + E+ K ++ + +P E F+ KG++ +LL+P+L
Sbjct: 187 IEHEPNYTYVTARLL----RNELVAKGLEFLGLPEDTLESDALEIFLKKGVELELLDPEL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ LYDRYF+H +GIR E+PQ FFMR++MGLS+NE+
Sbjct: 243 LNFDLAKLAAAIKPERSNQFTYLGLQTLYDRYFIHSDGIRYELPQLFFMRVSMGLSINEA 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
NRE+ AI+FY+LLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 NREERAIEFYDLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYNIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P +VPDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSEVPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G+ F E Y YE K L+KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGQAFAERYAHYEAIAKEQNF-LYKKVRAQDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGALDREKLARTIKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNLAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL L+ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLALERGVYSTFKGSLWDQGILPIDSLDLVGKTRPERMFEVDRTQRLDWDTLRT 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +ISRIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 DRGLWDSVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G L+ +
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGA----LNAVKAT 897
Query: 719 GYNKNLQEIKNNKKCLINSEIN-------------DVNECESCQ 749
+ + K + +E D +CE+CQ
Sbjct: 898 TVTAPVAAVAQEVKPEVTAEDGFTTAAPVPMACSIDNPDCEACQ 941
>gi|302525966|ref|ZP_07278308.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. AA4]
gi|302434861|gb|EFL06677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. AA4]
Length = 967
Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/709 (60%), Positives = 559/709 (78%), Gaps = 6/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V+ARLL+ ++ E ++ Q ++ +Y YF ++ + ++ +L+
Sbjct: 218 VEQEPNYSFVSARLLLDKLRGEALSYLAGAPRQASQDEMTSEYAPYFRAYLRRAVELELV 277
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L F+L ++ A+ PERDL F +LGL+ LYDRYF H G+R E+PQ FFMR+AMGL+
Sbjct: 278 DAELTTFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHNGVRFELPQAFFMRVAMGLA 337
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E NRE AI+FY LLS+F+FM STPTLFNSGT R+QLSSC+L+TV DDL IF++ K
Sbjct: 338 IREDNREARAIEFYELLSTFHFMASTPTLFNSGTNRAQLSSCFLTTVDDDLDSIFQAYKN 397
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA C
Sbjct: 398 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAAC 457
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP + PD
Sbjct: 458 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEANAEWTLFSPNETPD 517
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F + Y YE G+IK+F+K+ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 518 LHDLYGNAFAQRYREYEAAAARGEIKVFRKVRAVELWRRMLTMLFETGHPWITFKDPCNL 577
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+ +E+ VCNLGS+NL H+ LD +L+KT+R A+
Sbjct: 578 RSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTPEGLDTERLEKTVRTAV 637
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRPVGLGIMGFQD L + +P++S+EA+KFAD SME
Sbjct: 638 RMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFELGVPFASEEAVKFADVSMEH 697
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AST+LAEE+G+Y +++GSLW +GILP DS++LL R L V+ S +L+W
Sbjct: 698 LSYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQGDGLDVDTSTTLDWA 757
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATISNI GV SIEP ++NL++KSN+SG+FT +N +LV
Sbjct: 758 PLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLYVKSNMSGDFTVVNPHLV 817
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K LK +GLWDE M+++LKYFDG+L QI R+PDDL+ +YATAFEI WI++AGSVRQKWI
Sbjct: 818 KSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWIVDAGSVRQKWI 877
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
DQ+QSLN+YI+ SG+KLDE Y+ AW +GLKTTYYLR+ SA + +KS
Sbjct: 878 DQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRAQSATHVEKSTL 926
>gi|50083945|ref|YP_045455.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
sp. ADP1]
gi|49529921|emb|CAG67633.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
sp. ADP1]
Length = 941
Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/708 (63%), Positives = 570/708 (80%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E +P Y+ VTARLL + E+ K ++ + + E F+ KG++ +LL+P+L
Sbjct: 187 IEHEPNYTYVTARLL----RNELVAKGLEFLGLSEDTAENDALETFLKKGVELELLDPEL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ LYDRYF+H +G+R E+PQ FFMR++MGL++NE
Sbjct: 243 LNFDLATLAAAIQPERSNQFTYLGLQTLYDRYFIHSDGVRYELPQLFFMRVSMGLAINED 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
NRE+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ +I++NA+L
Sbjct: 303 NREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYNIYGAIRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLF+P +VPDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWLPDLFMQRVFEDGEWTLFTPSEVPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G+EF + Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGEEFAQRYAYYESIAKEQNL-LHKKVRAQDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNTS +EI VCNLGSINL H++ G LD KL +TI+ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTSDDEIAVCNLGSINLVQHVQGGVLDRDKLARTIKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S EA+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNMAYGSDEAVNFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL ++ K R + +V+ ++ L+W LRN
Sbjct: 662 AIQTSSDLAIERGVYSTFKGSLWDQGILPIDSLDIVAKSRPERMFEVDRTQRLDWDTLRN 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ P WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|451333815|ref|ZP_21904398.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Amycolatopsis azurea DSM 43854]
gi|449423584|gb|EMD28906.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Amycolatopsis azurea DSM 43854]
Length = 987
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/709 (60%), Positives = 558/709 (78%), Gaps = 6/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V+ARLL ++ E ++ Q ++ +Y +YF ++ + I+ +L+
Sbjct: 197 VEQEPNYSYVSARLLADKLRGEALSYLAGVPQQASQDEMTTRYPQYFRDYLKRAIELELV 256
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
NP+L F+L ++ A+ ERDL F +LGL+ LYDRYF H G+R E+PQ FFMR+AMGL+
Sbjct: 257 NPELQTFDLDKITAAIHAERDLDFGFLGLQTLYDRYFQHHNGVRFELPQAFFMRVAMGLA 316
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FY LLSSF+FM STPTLFNSGT R QLSSC+L+TV DDL IF++ K
Sbjct: 317 IREDDREARAIEFYELLSSFHFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIFQAYKN 376
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA C
Sbjct: 377 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAAC 436
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP + PD
Sbjct: 437 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPNETPD 496
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F E Y YE + G++K+F+K+ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 497 LHDLYGTAFAERYREYEAAAERGELKVFRKVRAIDLWRRMLTMLFETGHPWITFKDPCNL 556
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+ +E+ VCNLGS+NL H+ +D +L+KT+R A+
Sbjct: 557 RSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTPEGIDAKRLEKTVRTAV 616
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRP+GLG+MGFQD L + +P SS+EA++FAD SME
Sbjct: 617 RMLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFQDALFEIGVPLSSEEAVQFADTSMEH 676
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AST+LAEE+G+Y +++GSLW +GILP DS++LL R L V+ S +L+W
Sbjct: 677 ISYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQGDALDVDTSSTLDWA 736
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATISNI+GV SIEP ++NL +KSN+SG+FT +N +LV
Sbjct: 737 PLRERVKTVGMRNSNVMAIAPTATISNIVGVGQSIEPLFQNLFVKSNMSGDFTVVNPHLV 796
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ LK++GLWDE M+++LKYFDG+L QI R+PDDL+ +YATAFEI W+++AGS RQKWI
Sbjct: 797 RSLKERGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWLVDAGSRRQKWI 856
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
DQ+QSLN+YI+ SG+KLDE Y+ AW +GLKTTYYLR+ SA + +KS
Sbjct: 857 DQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRARSATHVEKSTL 905
>gi|134097870|ref|YP_001103531.1| ribonucleoside-diphosphate reductase subunit alpha
[Saccharopolyspora erythraea NRRL 2338]
gi|291007411|ref|ZP_06565384.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharopolyspora erythraea NRRL 2338]
gi|133910493|emb|CAM00606.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharopolyspora erythraea NRRL 2338]
Length = 782
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/756 (57%), Positives = 573/756 (75%), Gaps = 15/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E +P YSQVTARLL+ +++E + Q + +Y YF ++ +G++ L
Sbjct: 35 VEAEPNYSQVTARLLLDRLRREALTYLAGLPDDADQEQMRERYAPYFRDYVARGVELGQL 94
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA F+L L ALLPERD+ F +LGL+ LYDRYFLH +G R E+PQ FFMR+AMGL+
Sbjct: 95 DPELASFDLDRLGAALLPERDMSFGFLGLQTLYDRYFLHHDGTRYELPQAFFMRVAMGLA 154
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE A++FY LLSSF+FMCSTPTLFNSGT R QLSSC+L+TV DDL+GIF SI
Sbjct: 155 LREDDREARAVEFYRLLSSFDFMCSTPTLFNSGTTRPQLSSCFLTTVDDDLHGIFHSISN 214
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSKYAGGLGNDWT VR +G+ I+GTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA+C
Sbjct: 215 NAMLSKYAGGLGNDWTPVRGIGAHIRGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAVC 274
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEF++LRKNTGDDRRRTHDMN A WVPD FM+RV TWTLFSP + PD
Sbjct: 275 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFMRRVEADGTWTLFSPDETPD 334
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F E Y YE + G+IK+++++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 335 LHDLYGTAFAERYRAYERAAERGEIKVYRQVRAVDLWRRMLTMLFETGHPWITFKDPCNL 394
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS++E+ VCNLGS+NL H+ +D +L++T R A+
Sbjct: 395 RSPQQHAGVVHSSNLCTEITLNTSRDEVAVCNLGSVNLARHVTADGIDHERLERTTRTAV 454
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRP+GLG+MGF D L +IP SS+ A++FAD+SME
Sbjct: 455 RMLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFSDALFAQRIPVSSQAAVEFADRSMEE 514
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS +LA E+GRY S++GSLW QG+LP DSL LLE+ R ++ ++ + + +W
Sbjct: 515 ISYHAISASADLAAERGRYESFEGSLWSQGVLPIDSLALLEQAR-DGHVDLDRTMTRDWG 573
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ GMRNSN +AIAPTATI+NI GV SIEP YRNL++KSN+SG+FT +N +LV
Sbjct: 574 ALRERVRAVGMRNSNVMAIAPTATIANICGVGQSIEPIYRNLYVKSNMSGDFTVVNPHLV 633
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK GLWDE M+A+LK+ DG+L ISRIP +L+++YATAFE+ P W++EA + RQKWI
Sbjct: 634 ADLKAAGLWDEDMLADLKFHDGSLDPISRIPGELKELYATAFEVEPRWLVEAAARRQKWI 693
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SG+KLDE Y+LAW +GLKTTYYLRS SA + +KS G D L+
Sbjct: 694 DQAQSLNLYVAAPSGRKLDELYRLAWRQGLKTTYYLRSTSATHVEKSTLR-GTDG-KLNA 751
Query: 715 ISIKGYNKNLQEIK-NNKKCLINSEINDVNECESCQ 749
+ + + C + D +CE+CQ
Sbjct: 752 VPTTPVAPVVPTAAVDGAACSV-----DDPDCEACQ 782
>gi|262376781|ref|ZP_06070009.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
lwoffii SH145]
gi|262308491|gb|EEY89626.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
lwoffii SH145]
Length = 945
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + ++ +K + +P+ E ++ KGI+ +LL+P+L
Sbjct: 187 IEQEPNYTYVTARLL----RDDLVATGLKFLGLPVDTVEGDALETYLKKGIELELLSPEL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H +G+R E+PQ FFMR++MGLSLNE
Sbjct: 243 LNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSMGLSLNEE 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
NRE AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 NREDRAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNTSK EI VCNLGSINL H++ G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTSKEEIAVCNLGSINLVQHVQGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +A+ SNL+HRPVG+GIMGFQD L+ M + Y S A++FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQARNSNLKHRPVGMGIMGFQDALYEMNVAYGSDAAVEFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G Y ++ GSLWDQGILP DSL L+ K R + +V+ ++ L+W LR
Sbjct: 662 AISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +ISRIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDAVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVETRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|452956701|gb|EME62087.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
decaplanina DSM 44594]
Length = 990
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/709 (60%), Positives = 556/709 (78%), Gaps = 6/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V+ARLL ++ E ++ Q ++ +Y +YF ++ + I+ +L+
Sbjct: 195 VEQEPNYSYVSARLLADKLRGEALSYLAGVPQQASQDEMTTRYPQYFRDYLKRAIELELV 254
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
NP+L F+L ++ A+ ERDL F +LGL+ LYDRYF H G+R E+PQ FFMR+AMGL+
Sbjct: 255 NPELQTFDLDKITAAIHAERDLDFGFLGLQTLYDRYFQHHNGVRFELPQAFFMRVAMGLA 314
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FY LLS+F+FM STPTLFNSGT R QLSSC+L+TV DDL IF++ K
Sbjct: 315 IREDDREARAIEFYELLSTFHFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIFQAYKN 374
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA C
Sbjct: 375 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAAC 434
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP + PD
Sbjct: 435 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPNETPD 494
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F E Y YE + G++K+F+K+ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 495 LHDLYGNAFAERYREYEAAAERGELKVFRKVRAVDLWRRMLTMLFETGHPWITFKDPCNL 554
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+ +E+ VCNLGS+NL H+ LD +L+KT+R A+
Sbjct: 555 RSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTPEGLDTKRLEKTVRTAV 614
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRP+GLG+MGFQD L + +P SS EA++FAD SME
Sbjct: 615 RMLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFQDALFEIGVPLSSDEAVQFADTSMEH 674
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AST+LAEE+G+Y +++GSLW +GILP DS++LL R L V+ S +L+W
Sbjct: 675 ISYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQGDALDVDTSSTLDWA 734
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATISNI GV SIEP ++NL +KSN+SG+FT +N +LV
Sbjct: 735 PLRERVKTVGMRNSNVMAIAPTATISNICGVGQSIEPLFQNLFVKSNMSGDFTVVNPHLV 794
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ LK++GLWDE M+++LKYFDG+L QI R+PDDL+ +YATAFEI W+++AGS RQKWI
Sbjct: 795 RSLKERGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWLVDAGSRRQKWI 854
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
DQ+QSLN+YI+ SG+KLDE Y+ AW +GLKTTYYLR+ SA + +KS
Sbjct: 855 DQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRARSATHVEKSTL 903
>gi|403509721|ref|YP_006641359.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
alba ATCC BAA-2165]
gi|402803409|gb|AFR10819.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
alba ATCC BAA-2165]
Length = 815
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/709 (59%), Positives = 560/709 (78%), Gaps = 7/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E DP YS V ARLL+ ++ E + Q ++ +Y Y + ++ +G++ L
Sbjct: 46 VEVDPDYSYVAARLLLDKLRTEALSFVFDAHETAGQTEMGDRYAGYLAAYVRRGVELGQL 105
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P LA F+L +L AL +RD QF +LGL+ LYDRYFLH + +R E+PQ FFMR+AMGL+
Sbjct: 106 DPALAGFDLDVLGRALHADRDEQFTFLGLQTLYDRYFLHSDDVRYELPQAFFMRVAMGLA 165
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
LNE +RE AI+FY LLSSF+FM STPTLFN+GT+R+QLSSC+L+T+ DDL IF I
Sbjct: 166 LNEDDREARAIEFYELLSSFDFMASTPTLFNAGTVRAQLSSCFLTTIGDDLQEIFHGIGN 225
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSKY+GGLGNDWT VR LGS IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA+C
Sbjct: 226 NAMLSKYSGGLGNDWTPVRGLGSHIKGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVC 285
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGD+RRRTHDMN A WVPDLFMKRV ++ +WTLFSP +VPD
Sbjct: 286 AYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFMKRVEEQGSWTLFSPDEVPD 345
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+K+G EF E+Y YE + + G+IK+ + + A+ LWR++L+MLFETGHPWITFKD N+
Sbjct: 346 LHDKYGLEFVEAYERYEAEARAGRIKVHRTLPAVDLWRRMLTMLFETGHPWITFKDPSNL 405
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT K+E+ VCNLGS+NL H+ +D +L++T+R A+
Sbjct: 406 RSPQQHVGVVHSSNLCTEITLNTDKDEVAVCNLGSVNLARHVSAEGIDIERLRRTVRTAV 465
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID+N+Y + +A+ +N+RHRPVGLG+MGFQD L ++ PY S+ A+ FAD+SME+
Sbjct: 466 RMLDNVIDVNFYTIPEARRANMRHRPVGLGLMGFQDALFELRTPYGSEGAVSFADESMEL 525
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS ELA E+G Y +++GSLW +G+LP DSL+LL + RG L ++ E+L+W
Sbjct: 526 IGYYAIEASMELAAERGSYETFEGSLWSRGVLPIDSLRLLAEARGGD-LDMDRGETLDWD 584
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ GMRNSN +AIAPTATI+NI GV+ SIEP YRNL++KSN+SG+FT +N +LV
Sbjct: 585 SLRERVRTTGMRNSNVMAIAPTATIANITGVNQSIEPVYRNLYVKSNMSGDFTVVNDHLV 644
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK++GLWDE M+A LK DG+L +I R+PDDL+ +YAT+FE+ P+W++EAGS RQKWI
Sbjct: 645 RDLKERGLWDEEMVAELKRHDGSLGEIDRVPDDLKDLYATSFEVDPSWLVEAGSRRQKWI 704
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
DQ+QSLN+Y++ SG+KLD Y+ AW GLKTTYYLR+ SA + +KS
Sbjct: 705 DQAQSLNLYMAAPSGRKLDALYRKAWRSGLKTTYYLRAQSATHVEKSTL 753
>gi|344200649|ref|YP_004784975.1| ribonucleoside-diphosphate reductase subunit alpha
[Acidithiobacillus ferrivorans SS3]
gi|343776093|gb|AEM48649.1| ribonucleoside-diphosphate reductase, alpha subunit
[Acidithiobacillus ferrivorans SS3]
Length = 950
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/725 (60%), Positives = 562/725 (77%), Gaps = 21/725 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y+ +ARLL+ ++ EV G+ Q ++ +Y EYF ++ GI N+L++P+L +
Sbjct: 204 IERDPAYAYASARLLLDRVRWEVLGEAATQTEMTARYPEYFRDYLQTGIQNELIDPRLGQ 263
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L ++ AL PERDL F YLG++ILYDRYFLH+ RIE+PQ F+MR+AMGL+++E +R
Sbjct: 264 YDLERITAALRPERDLNFQYLGMQILYDRYFLHVRERRIELPQAFWMRVAMGLAMDEIDR 323
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI FY +LSSF+F+ STPTLFN+GT+R QLSSC+L+TV DDL I+E+IKENA+LSK
Sbjct: 324 ETHAIAFYEVLSSFDFVSSTPTLFNAGTLRPQLSSCFLTTVGDDLDDIYEAIKENAMLSK 383
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
++GGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 384 FSGGLGNDWTPVRALGSFIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 443
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLFSP + PDLH+ G
Sbjct: 444 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVESNTMWTLFSPNETPDLHDLTG 503
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
F E Y YE G+I+LFK++ A++LWRK+L+MLFETGHPWITFKD CN+RSPQQH
Sbjct: 504 SAFRERYEHYERMADAGEIELFKRMPAIHLWRKMLTMLFETGHPWITFKDPCNLRSPQQH 563
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-------------------L 401
VG +HSSNLCTEITLNT+ EI VCNLGS+NL H++ +
Sbjct: 564 VGAVHSSNLCTEITLNTNAREIAVCNLGSVNLVSHLRATASTDTSALREDSSPEELLALM 623
Query: 402 DPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
D KL +TIR+AMRMLDNVID+NYYAV KA+ SN+RHRPVGLG+MGF D L M+IPY+S
Sbjct: 624 DEEKLGRTIRVAMRMLDNVIDMNYYAVAKARNSNMRHRPVGLGLMGFSDALLQMRIPYAS 683
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
A+ FAD S E+I Y+A AS +LA E+G Y S+ GSLW QGILP DS++LL R ++
Sbjct: 684 AAALAFADISQEIISYHAIDASADLARERGSYQSFPGSLWSQGILPIDSIELLAASR-TQ 742
Query: 522 YLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ V+ S+ LNW LR+++K G+RNSNC+AIAPTATISNI+GVS IEP Y+NL++KSN
Sbjct: 743 GVDVDRSQRLNWTALRDKVKA-GIRNSNCLAIAPTATISNIVGVSQGIEPIYQNLYVKSN 801
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
LSGEFT +N YLV +LK+ LWDE M+ +LKYFDG++ + RIP ++ +YA AFE P
Sbjct: 802 LSGEFTVVNSYLVHDLKRLELWDEVMVNDLKYFDGSVMPVDRIPASIKPLYANAFETDPA 861
Query: 642 WIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
W++EA + RQKW+DQ+QSLN+Y SGKK+DETY+LAW RGLKTTYYLRS+ A A+KS
Sbjct: 862 WLVEAAARRQKWLDQAQSLNLYFGQPSGKKIDETYRLAWKRGLKTTYYLRSLGATAAEKS 921
Query: 702 NFEMG 706
+ G
Sbjct: 922 TVQTG 926
>gi|300784784|ref|YP_003765075.1| ribonucleoside-diphosphate reductase subunit alpha [Amycolatopsis
mediterranei U32]
gi|384148056|ref|YP_005530872.1| ribonucleoside-diphosphate reductase subunit alpha [Amycolatopsis
mediterranei S699]
gi|399536669|ref|YP_006549331.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
mediterranei S699]
gi|299794298|gb|ADJ44673.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
mediterranei U32]
gi|340526210|gb|AEK41415.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
mediterranei S699]
gi|398317439|gb|AFO76386.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
mediterranei S699]
Length = 972
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/709 (60%), Positives = 554/709 (78%), Gaps = 6/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V+ARLL+ ++ E + Q ++ +Y YF ++ + I+ +L+
Sbjct: 195 VEQEPNYSYVSARLLLDKLRGEALSYLAGTPRLASQDEMAAEYPAYFRAYLRRAIELELV 254
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L F+L ++ A+ PERDL F +LGL+ LYDRYF H +G R E+PQ FFMR+AMGL+
Sbjct: 255 DAELQRFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHDGTRFELPQAFFMRVAMGLA 314
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FY LLSSF+FM STPTLFNSGT R QLSSC+L+TV DDL IF++ K
Sbjct: 315 IREGDREARAIEFYELLSSFHFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIFQAYKN 374
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA C
Sbjct: 375 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAAC 434
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP + PD
Sbjct: 435 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPNETPD 494
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G EF Y YE G+IK+F++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 495 LHDLYGNEFATRYREYEAAADRGEIKVFRRARAVDLWRRMLTMLFETGHPWITFKDPCNL 554
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+ E+ VCNLGS+NL H+ LD +L+KT+R A+
Sbjct: 555 RSPQQHVGVVHSSNLCTEITLNTNSEEVAVCNLGSVNLLKHVTPEGLDTKRLEKTVRTAV 614
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + +A+ SNLRHRPVGLGIMGFQD L + +P++S+EA+KFAD SME
Sbjct: 615 RMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFEIGVPFASEEAVKFADVSMEH 674
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AST+LAEE+G+Y S++GSLW +GILP DSL+LL R L V+ S +L+W
Sbjct: 675 LSYYAISASTDLAEERGQYQSFEGSLWSKGILPIDSLQLLIDARQGDGLDVDTSSTLDWA 734
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATISNI GV SIEP ++NL +KSN+SG+FT +N +LV
Sbjct: 735 PLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLFVKSNMSGDFTVVNPHLV 794
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ LK +GLWDE M+++LKYFDG+L QI R+PDDL+ +YATAFEI WI++AGSVRQKWI
Sbjct: 795 RSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWIVDAGSVRQKWI 854
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
DQ+QSLN+YI+ SG+KLD+ Y+ AW +GLKTTYYLR+ SA + +KS
Sbjct: 855 DQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKTTYYLRAQSATHVEKSTL 903
>gi|389721366|ref|ZP_10188118.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
sp. HA]
gi|388608662|gb|EIM37858.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
sp. HA]
Length = 944
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/708 (62%), Positives = 568/708 (80%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEY--FSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + ++ ++ + +P E ++ KGI+ +LL+P+L
Sbjct: 187 IEQEPNYTYVTARLL----RNDLVATGLEFLGLPADTVEVDALETYLKKGIELELLSPEL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H +G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LNFDLTKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSMGLALNEE 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
NRE+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDL+ I+ ++++NA+L
Sbjct: 303 NREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLFDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNTSK EI VCNLGSINL H++ G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTSKEEIAVCNLGSINLVQHVQGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +A+ SNL+HRPVG+GIMGFQD L+ M + Y S+ A++FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQARNSNLKHRPVGMGIMGFQDALYEMNLAYGSEAAVEFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G Y ++ GSLWDQGILP DSL L+ K R + +V+ ++ L+W LR
Sbjct: 662 AISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +ISRIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDAVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVETRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|72163400|ref|YP_291057.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
gi|71917132|gb|AAZ57034.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
Length = 821
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/710 (60%), Positives = 559/710 (78%), Gaps = 9/710 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E DP YS V+ARLL+ +++E E D+ +Y EY FI +GI+ + L
Sbjct: 52 VETDPDYSYVSARLLLDKLRREALTFLSGHPDEATHADMARRYPEYLRAFITRGIELEHL 111
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
P+LA+F+L L AL PERDL F YLGL+ LYDRYFLH EG R E+PQ F MR+AMG++
Sbjct: 112 TPELADFDLDRLGAALRPERDLNFTYLGLQTLYDRYFLHHEGTRYELPQAFLMRVAMGVA 171
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L+E +R AI+FY LLSSF+FMCSTPTLFN+GT R QLSSC+L+TV DDL IF +I
Sbjct: 172 LHEDDRNARAIEFYELLSSFDFMCSTPTLFNAGTRRPQLSSCFLTTVGDDLAEIFRAISN 231
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKY+GGLGNDWT VR LG+ IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA+C
Sbjct: 232 NALLSKYSGGLGNDWTPVRGLGAHIKGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVC 291
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGD+RRRTHDMN A WVPDLF++RV + WTLFSP +VPD
Sbjct: 292 AYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFSPDEVPD 351
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+++G++F +Y+ YE G+I++F+++ A+ LWR++L+MLFETGHPWITFKD CN+
Sbjct: 352 LHDRYGEDFARAYVAYERAADRGEIRVFRRVRAVDLWRRMLTMLFETGHPWITFKDPCNL 411
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS +E+ VCNLGS+NL H+ LD +L++T+R A+
Sbjct: 412 RSPQQHAGVVHSSNLCTEITLNTSLDEVAVCNLGSVNLANHVGPDGLDAERLRRTVRTAV 471
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID+N Y + +A+ +N+RHRP+GLG+MG+QD L +++P +S EA++FAD+SME+
Sbjct: 472 RMLDNVIDVNLYTIPEAERANMRHRPIGLGLMGYQDALFTLRLPVASPEAVEFADESMEL 531
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLL-EKERGSKYLKVNMSESLNW 533
+ YYA AS +LA E+G YSS++GSLW +GILP DSL+LL E RG L V+ ++ L+W
Sbjct: 532 LSYYAIEASADLAAERGSYSSFEGSLWSRGILPIDSLELLAEARRGD--LDVDRTQRLDW 589
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR +++ GMRNSN +AIAPTATI+NI+GV+ SIEP YRNL++K+N+SG+FT +N L
Sbjct: 590 DTLREKVRTTGMRNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSGDFTVVNPSL 649
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK++GLWDE M+ LK DG+L I R+P+DL+ +YATAFEI P W+++A S RQKW
Sbjct: 650 VRDLKERGLWDEEMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLVDAASRRQKW 709
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
IDQ+QSLN+Y++ SG+KLDE Y+ AW +GLKTTYYLRS A + +KS
Sbjct: 710 IDQAQSLNLYMAEPSGRKLDELYRRAWRKGLKTTYYLRSQGATHVEKSTL 759
>gi|385674981|ref|ZP_10048909.1| ribonucleoside-diphosphate reductase subunit alpha [Amycolatopsis
sp. ATCC 39116]
Length = 928
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/753 (57%), Positives = 568/753 (75%), Gaps = 12/753 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP 56
+E++P YS VTARLL+ ++ E G+ + + Y YF ++ I+ +L++P
Sbjct: 184 VEREPNYSAVTARLLLDKLRGEALSHLAGEPRQASQAELDYPAYFRDYLRHAIELELVDP 243
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+LA F+L ++ A+ PERDL F +LGL+ LYDRYFLH +G R E+PQ FF+R+AMGL+L
Sbjct: 244 ELARFDLDKVTAAIRPERDLDFGFLGLQTLYDRYFLHEQGTRFELPQAFFLRVAMGLALR 303
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
E +RE A++FY+LLSSF+FM STPTLFNSGT R+QLSSC+L+TV D L IF+S K NA
Sbjct: 304 EDDREARAVEFYDLLSSFDFMASTPTLFNSGTTRAQLSSCFLTTVEDSLDAIFQSYKNNA 363
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LL+KY+GGLGNDWT VR LG+ IKGTNG SQGV+PFLK+ ND AVAVNQGGKRKGA CAY
Sbjct: 364 LLAKYSGGLGNDWTPVRGLGAHIKGTNGTSQGVVPFLKIANDTAVAVNQGGKRKGAACAY 423
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH+D+EEF++LRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP + PDLH
Sbjct: 424 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPDETPDLH 483
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G F + Y YE G+I++F+++ A+ LWR++L+MLFETGHPWITFKD CN+RS
Sbjct: 484 DLYGNAFAQRYREYEAAADRGEIRVFRRVRAVELWRRMLTMLFETGHPWITFKDPCNLRS 543
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQQH G++HSSNLCTEITLNTS +E+ VCNLGS+NL H+ +G LD KL++T+R A+RM
Sbjct: 544 PQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSVNLARHVSDGGLDTAKLERTVRTAVRM 603
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNV+DIN+Y + +A+ SNLRHRPVGLG+MG+QD L + +P S EA++FAD+SME +
Sbjct: 604 LDNVVDINFYTIPEARRSNLRHRPVGLGLMGYQDALFTLGLPVDSPEAVEFADRSMEHLS 663
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y+A AS +LA E+G Y +++GSLW QG+LP DSL+LL + R L+V+ S +L+W L
Sbjct: 664 YHAIAASAQLARERGAYETFEGSLWSQGVLPLDSLRLLAEARQGDALEVDSSSTLDWDAL 723
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R ++ GMRNSN +AIAPTATISNI GV SIEP ++NL++KSN+SG+FT +N +LV
Sbjct: 724 REVVRG-GMRNSNVMAIAPTATISNICGVGQSIEPLFQNLYVKSNMSGDFTVVNPHLVAA 782
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK++GLWDE+M+A+LKYFDG+L+QI R+P DL+++YATAFEI W+++A S RQKWIDQ
Sbjct: 783 LKERGLWDEAMVADLKYFDGSLAQIDRVPADLKRLYATAFEIDSRWLVDAASRRQKWIDQ 842
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEIS 716
+QSLN+YI+ SG+KLDE Y+ AW +GLKTTYYLR+ +A +KS G D L+ +
Sbjct: 843 AQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRAKAATSVEKSTLR-GTDG-KLNAVP 900
Query: 717 IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
C I D +CE+CQ
Sbjct: 901 AAVPAAVPAPEPEFAACRI-----DDPDCEACQ 928
>gi|255318311|ref|ZP_05359546.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
radioresistens SK82]
gi|262379055|ref|ZP_06072211.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
radioresistens SH164]
gi|255304623|gb|EET83805.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
radioresistens SK82]
gi|262298512|gb|EEY86425.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
radioresistens SH164]
Length = 942
Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/710 (62%), Positives = 565/710 (79%), Gaps = 11/710 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQI----DIPIKYKEYFSKFINKGIDNKLLNP 56
+E++P Y+ VTARLL + E+ + + D P E F+ KGI+ +LL+
Sbjct: 187 IEQEPNYTYVTARLL----RDELVATGLAFLGLSEDTP--ESEALEAFLKKGIELELLDA 240
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+L +F+L L+ A+ PER QF YLGL+ L+DRYF+H GIR E+PQ FFMR++MGL++
Sbjct: 241 ELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFELPQLFFMRVSMGLAVQ 300
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
E +RE AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA
Sbjct: 301 EDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTISDDLYNIYGAMRDNA 360
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAY
Sbjct: 361 MLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAY 420
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH
Sbjct: 421 LETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLH 480
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ G F E Y YE+ K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RS
Sbjct: 481 DLTGSAFAERYAYYESVAKEQNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRS 539
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQQHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ GKLD KL +T++ A+RM
Sbjct: 540 PQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKLDREKLARTVKTAVRM 599
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ + + Y S A++FAD+SME+I
Sbjct: 600 LDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGSDAAVEFADESMEVIS 659
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYA S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W L
Sbjct: 660 YYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDRMFEVDRTQRLDWNTL 719
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+
Sbjct: 720 RTKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRA 779
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK++GLWD M+ +LK+F+G++ +I+RIPD+L+ I+ATAFE+ P WI++A S RQKWIDQ
Sbjct: 780 LKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPRWIVDAASRRQKWIDQ 839
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+QSLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 840 AQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|198284353|ref|YP_002220674.1| ribonucleoside-diphosphate reductase subunit alpha
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665782|ref|YP_002427015.1| ribonucleotide-diphosphate reductase subunit alpha
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248874|gb|ACH84467.1| ribonucleoside-diphosphate reductase, alpha subunit
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517995|gb|ACK78581.1| ribonucleotide-diphosphate reductase, alpha subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 948
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/766 (58%), Positives = 571/766 (74%), Gaps = 38/766 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y+ +ARLL+ ++ EV G+ Q ++ +Y +YF ++ GI N+L++P+L +
Sbjct: 204 IERDPAYAYASARLLLDRVRWEVLGEAATQAEMTARYPQYFRDYLQTGIQNELIDPRLGQ 263
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L ++ AL PERDL F YLG++ILYDRYFLH+ RIE+PQ F+MR+AMGL++NE +R
Sbjct: 264 YDLERITAALRPERDLDFQYLGMQILYDRYFLHVRERRIELPQAFWMRVAMGLAMNEVDR 323
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E AI FY +LSSF+F+ STPTLFN+GT+R QLSSC+L+TV DDL I+E+IKENA+LSK
Sbjct: 324 ETHAIAFYEVLSSFDFVSSTPTLFNAGTLRPQLSSCFLTTVGDDLDDIYEAIKENAMLSK 383
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
++GGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 384 FSGGLGNDWTPVRALGSFIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 443
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDIEEF+ELRKNTGDDRRRTHDMN A W+PDLFM+RV + WTLFSP + PDLH+ G
Sbjct: 444 HMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVENNAMWTLFSPNETPDLHDLTG 503
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
F E Y YE G I+LFK+I A++LWRK+L+MLFETGHPWITFKD CN+RSPQQH
Sbjct: 504 SAFRERYEHYERMADAGGIELFKRIPAIHLWRKMLTMLFETGHPWITFKDPCNLRSPQQH 563
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-----------------GKLDP 403
VG++HSSNLCTEITLNT+ EI VCNLGS+NL H++ +D
Sbjct: 564 VGVVHSSNLCTEITLNTNAKEIAVCNLGSVNLVSHLRAVADAGALREDSTPEELLAMMDG 623
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
KL TIR+AMRMLDNVID+NYYAV KA+ SNLRHRPVGLG+MGF D L M+IPY+S
Sbjct: 624 EKLHHTIRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFSDALLQMRIPYASAA 683
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A+ FAD S E+I Y+A AS +LA E+G Y S+ GSLW QGILP DS+ LL R +
Sbjct: 684 ALAFADISQEVISYHAIDASADLARERGSYQSFPGSLWSQGILPIDSIDLLAAGR-EHGV 742
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
V+ S+ L+W LR++++ GMRNSNC+AIAPTATISNI+GVS IEP Y+NL++KSNLS
Sbjct: 743 DVDRSQHLDWATLRSKVRG-GMRNSNCLAIAPTATISNIVGVSQGIEPIYQNLYVKSNLS 801
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
GEFT +N YLV +LK+ LWDE M+ +LKYFDG++ + RIP ++ +YA AFE P W+
Sbjct: 802 GEFTVVNSYLVHDLKRLELWDEVMVNDLKYFDGSVMPVDRIPASIKPLYANAFETDPEWL 861
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
+EA + RQKW+DQ+QSLN+Y SGKK+DE Y+LAW RGLKTTYYLRS+ A A+KS
Sbjct: 862 VEAAARRQKWLDQAQSLNLYFGQPSGKKIDEIYRLAWKRGLKTTYYLRSLGATAAEKSTV 921
Query: 704 EMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ G L+ + + G K C I D CE+CQ
Sbjct: 922 QTG----TLNAV-VSG---------QPKACAI-----DDPTCEACQ 948
>gi|421856755|ref|ZP_16289115.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403187823|dbj|GAB75316.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 942
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/710 (62%), Positives = 565/710 (79%), Gaps = 11/710 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQI----DIPIKYKEYFSKFINKGIDNKLLNP 56
+E++P Y+ VTARLL + E+ + + D P E F+ KG++ +LL+
Sbjct: 187 IEQEPNYTYVTARLL----RDELVATGLAFLGLSEDTP--ESEALEGFLKKGVELELLDA 240
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+L +F+L L+ A+ PER QF YLGL+ L+DRYF+H GIR E+PQ FFMR++MGL++
Sbjct: 241 ELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFELPQLFFMRVSMGLAVQ 300
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
E +RE AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA
Sbjct: 301 EDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTISDDLYNIYGAMRDNA 360
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAY
Sbjct: 361 MLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAY 420
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH
Sbjct: 421 LETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLH 480
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ G F E Y YE+ K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RS
Sbjct: 481 DLTGSAFAERYAYYESVAKEQNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRS 539
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQQHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ GKLD KL +T++ A+RM
Sbjct: 540 PQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKLDREKLARTVKTAVRM 599
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ + + Y S A++FAD+SME+I
Sbjct: 600 LDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGSDAAVEFADESMEVIS 659
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYA S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W L
Sbjct: 660 YYAIETSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDRMFEVDRTQRLDWNTL 719
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+
Sbjct: 720 RTKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRA 779
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK++GLWD M+ +LK+F+G++ +I+RIPD+L+ I+ATAFE+ P WI++A S RQKWIDQ
Sbjct: 780 LKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPRWIVDAASRRQKWIDQ 839
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+QSLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 840 AQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|359428888|ref|ZP_09219916.1| ribonucleoside-diphosphate reductase large subunit [Acinetobacter
sp. NBRC 100985]
gi|358235469|dbj|GAB01455.1| ribonucleoside-diphosphate reductase large subunit [Acinetobacter
sp. NBRC 100985]
Length = 944
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/763 (58%), Positives = 580/763 (76%), Gaps = 19/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL E+ ++ + +P E F+ KGI+ LL+ L
Sbjct: 187 IEQEPNYTYVTARLL----SNELVSTGLEFLGLPSDTLEGNALETFLKKGIELDLLSEDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LNFDLAKLAAAIKPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEE 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
N+E AI+FY+LLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 NKEDRAIEFYDLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P +VPDLH+
Sbjct: 423 TWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSEVPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SN++HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNMKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S+ LA E+G YS++ GSLWDQGILP DSL+L+ K R + +V+ ++ L+W LR+
Sbjct: 662 AIETSSNLAIERGSYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLDWDSLRS 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI------DSVNL 712
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G SV
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKPASVEA 901
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEIN------DVNECESCQ 749
++ + E++ + + D +CE+CQ
Sbjct: 902 PVVAAQAVEDKKPEVQAEEDGFTTAAPVPMACSIDNPDCEACQ 944
>gi|421465882|ref|ZP_15914569.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
radioresistens WC-A-157]
gi|400204149|gb|EJO35134.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
radioresistens WC-A-157]
Length = 942
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/710 (62%), Positives = 565/710 (79%), Gaps = 11/710 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQI----DIPIKYKEYFSKFINKGIDNKLLNP 56
+E++P Y+ VTARLL + E+ + + D P E F+ KG++ +LL+
Sbjct: 187 IEQEPNYTYVTARLL----RDELVATGLAFLGLSEDTP--ESEALEAFLKKGVELELLDA 240
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+L +F+L L+ A+ PER QF YLGL+ L+DRYF+H GIR E+PQ FFMR++MGL++
Sbjct: 241 ELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFELPQLFFMRVSMGLAIQ 300
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
E +RE AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA
Sbjct: 301 EDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTISDDLYNIYGAMRDNA 360
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAY
Sbjct: 361 MLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAY 420
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH
Sbjct: 421 LETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLH 480
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ G F E Y YE+ K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RS
Sbjct: 481 DLTGSAFAERYAYYESVAKEQNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRS 539
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQQHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ GKLD KL +T++ A+RM
Sbjct: 540 PQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKLDRKKLARTVKTAVRM 599
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ + + Y S A++FAD+SME+I
Sbjct: 600 LDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGSDAAVEFADESMEVIS 659
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYA S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W L
Sbjct: 660 YYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDRMFEVDRTQRLDWNTL 719
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+
Sbjct: 720 RAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRA 779
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK++GLWD M+ +LK+F+G++ +I+RIPD+L+ I+ATAFE+ P WI++A S RQKWIDQ
Sbjct: 780 LKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPRWIVDAASRRQKWIDQ 839
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+QSLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 840 AQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|424745943|ref|ZP_18174202.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-141]
gi|422941762|gb|EKU36827.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-141]
Length = 943
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/708 (62%), Positives = 562/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----SSELVSTGLAFLGLPTDTPENTALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L LS A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEE 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
N+E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 NKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H+K G LD KL +TI+ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTIKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S AI FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S+ LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|392950909|ref|ZP_10316464.1| ribonucleoside-diphosphate reductase, subunit alpha
[Hydrocarboniphaga effusa AP103]
gi|391859871|gb|EIT70399.1| ribonucleoside-diphosphate reductase, subunit alpha
[Hydrocarboniphaga effusa AP103]
Length = 954
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/718 (62%), Positives = 554/718 (77%), Gaps = 20/718 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----------KEIKQIDIPIKYKEYFSKFINKGI 49
+EK+P Y+ V+ARLLM ++ E +E+K I Y +YF ++I++ I
Sbjct: 188 IEKEPNYTYVSARLLMDGLRHEALKFLRMSETRPTFEEMKAI-----YPDYFREYIHRAI 242
Query: 50 DNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRI 109
+ +LL+PKLA F+L L ALL +RD +F+YLGL+ LYDRYF+H R E+PQ FFMR+
Sbjct: 243 ELELLDPKLALFDLDTLGKALLADRDAKFDYLGLQTLYDRYFIHSNKTRFELPQAFFMRV 302
Query: 110 AMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIF 169
AMGL++NE +RE AI+FY LLSSF+FM STPTLFNSGT R QLSSCYL+ VPDDL+GIF
Sbjct: 303 AMGLAMNEIDRETRAIEFYTLLSSFDFMSSTPTLFNSGTPRPQLSSCYLTQVPDDLHGIF 362
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+I +NA+LSK+AGGLGNDWT VR +G IKGTNG+S GV+PFLKV ND VAVNQGGKR
Sbjct: 363 GAIHDNAMLSKFAGGLGNDWTPVRGMGGWIKGTNGKSNGVVPFLKVANDTCVAVNQGGKR 422
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA+CAYLETWH DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFMKRV++ WTLFSP
Sbjct: 423 KGALCAYLETWHRDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEDGPWTLFSP 482
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
+ PDLH G+ FE+ Y+ YE + G++K K+I AL LWRK+LSMLFETGHPWITFK
Sbjct: 483 DETPDLHELVGEAFEKKYVEYEKLAEEGRLKNTKRIQALGLWRKMLSMLFETGHPWITFK 542
Query: 350 DACNIRSPQQHVGIIHSSNLCTEITLNTSKN-EIGVCNLGSINLTLHM-KNGKLDPIKLK 407
D CN+RSPQQHVG++HSSNLCTEITLNT N EI VCNLGS+NL H+ GKLD KL+
Sbjct: 543 DPCNLRSPQQHVGVVHSSNLCTEITLNTKANQEIAVCNLGSVNLPAHITAEGKLDKAKLE 602
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+TI AMRMLDNVI+ NYY+V A+ SNLRHRPVGLG+MGF D L+ +++PY S AI F
Sbjct: 603 RTITTAMRMLDNVIEYNYYSVPTARNSNLRHRPVGLGVMGFNDALYKLRLPYESDRAISF 662
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLK--V 525
AD SME I YYA AS +LA E+G YSS+ GSLWDQGILP DS++L+ + RG +YL+
Sbjct: 663 ADYSMEAISYYALKASADLAIERGAYSSFKGSLWDQGILPIDSIRLVAEARGDRYLQQDT 722
Query: 526 NMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE 585
S + +W LR +IK G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGE
Sbjct: 723 QASGAFDWDSLRTQIKTSGIRNSNTMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 782
Query: 586 FTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIE 645
FT +N YLV +LK LWDE M +LKY+DG++ +I R+P++L+ IY AFEI P +++
Sbjct: 783 FTVVNEYLVNDLKALDLWDEVMAHDLKYYDGSVQKIDRVPEELKAIYKCAFEIDPKRLVD 842
Query: 646 AGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
AGS RQKWIDQ+QSLN+Y++ SGKKLDE YK AWL GLKTTYYLR++ A + +K+
Sbjct: 843 AGSRRQKWIDQAQSLNLYMAQPSGKKLDELYKHAWLSGLKTTYYLRTMGATHTEKTTI 900
>gi|403049948|ref|ZP_10904432.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
bereziniae LMG 1003]
gi|445419845|ref|ZP_21435409.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
sp. WC-743]
gi|444759298|gb|ELW83770.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
sp. WC-743]
Length = 941
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/708 (62%), Positives = 566/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + ++ +K + + +E ++ KGI+ +LL+P+L
Sbjct: 186 IEQEPNYTYVTARLL----RDDLVATGLKFLGLATDTEEGDALETYLKKGIELELLSPEL 241
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H +R E+PQ FFMR++MGL+LNE
Sbjct: 242 LNFDLAKLAAAIKPERSNQFTYLGLQTLFDRYFIHSNDVRFELPQLFFMRVSMGLALNEE 301
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
RE AI+FY+LLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NALL
Sbjct: 302 QREDRAIEFYDLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIQDDLYDIYGAMRDNALL 361
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 362 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 421
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RVI+ + WTLF+P + PDLH+
Sbjct: 422 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVIEDAEWTLFTPSETPDLHDL 481
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G F E Y YE K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 482 TGAAFAERYAYYEGIAKESNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 540
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H++ GKLD KL +T++ A+RMLD
Sbjct: 541 QHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVQHVQGGKLDREKLARTVKTAVRMLD 600
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV++A+ SNL+HRPVG+GIMGFQD L+ + + Y S EA+ FAD+SME+I YY
Sbjct: 601 NVIDINYYAVEQARNSNLKHRPVGMGIMGFQDALYELGMGYGSDEAVDFADESMEVISYY 660
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 661 AIQTSSDLAIERGVYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 720
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 721 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 780
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +I+RIPD+L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 781 DRGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 840
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 841 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 888
>gi|262280151|ref|ZP_06057936.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
gi|262260502|gb|EEY79235.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
Length = 943
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 562/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----SSELVSTGLAFLGLPTDTPENTALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLTLNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
N+E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 NKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S AI FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S+ LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|297563528|ref|YP_003682502.1| ribonucleoside-diphosphate reductase subunit alpha [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296847976|gb|ADH69996.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 882
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/710 (60%), Positives = 556/710 (78%), Gaps = 7/710 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E DP YS V ARLL+ +++E Q ++ +Y Y + ++ +GID L
Sbjct: 104 VEVDPDYSYVAARLLLDKLRREALTFISGAPDAAGQSEMGERYAAYLAAYVGRGIDLGQL 163
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P LA+F+L+ L AL PERD QF +LG++ LYDRYFLH + +R E+PQ FFMR+AMGL+
Sbjct: 164 DPALAKFDLARLGAALRPERDEQFTFLGIQTLYDRYFLHSDEVRYELPQAFFMRVAMGLA 223
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
LNE +RE AI+FY LLSSF+FM STPTLFNSGT+R+QLSSC+L+TV DDL IF I
Sbjct: 224 LNEDDREARAIEFYELLSSFDFMASTPTLFNSGTVRAQLSSCFLTTVGDDLQAIFHGISN 283
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA+LSKY+GGLGNDWT VR LGS I+GTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA+C
Sbjct: 284 NAMLSKYSGGLGNDWTPVRGLGSHIRGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVC 343
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGD+RRRTHDMN A WVPDLFM+RV + +WTLFSP +VPD
Sbjct: 344 AYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFMQRVEQGGSWTLFSPDEVPD 403
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+K+G EF E+Y YE + G+IK+ K + A+ LWR++L+MLFETGHPWITFKD N+
Sbjct: 404 LHDKYGAEFAEAYAHYEAEAAAGRIKVSKTLPAVDLWRRMLTMLFETGHPWITFKDPSNL 463
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNTS +E+ VCNLGS+NL H+ LD +L++T+R A+
Sbjct: 464 RSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSVNLAQHVGPDGLDAERLRRTVRTAV 523
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID+N+Y + +A+ +N+RHRPVGLG+MGFQD L ++ P++S A+ FAD+SME+
Sbjct: 524 RMLDNVIDVNFYTIPEARRANMRHRPVGLGLMGFQDALFKLRTPFASDGAVSFADESMEL 583
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS ELA E+G Y S++GSLW +G+LP DSL+LL + R L ++ E+L+W
Sbjct: 584 ISYYAIEASMELAAERGSYESFEGSLWSRGVLPIDSLRLLAESRDGD-LDMDRGETLDWD 642
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R+K GMRNSN +AIAPTATI+NI GVS SIEP YRNL++KSN+SG+FT +N YLV
Sbjct: 643 SLRERVKTTGMRNSNVMAIAPTATIANITGVSQSIEPVYRNLYVKSNMSGDFTVVNPYLV 702
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD+ M++ LK DG+L I R+P DL+ +YATAFE+ P W+++AGS RQKWI
Sbjct: 703 RDLKARGLWDDDMVSALKMHDGSLGAIDRVPADLKALYATAFEVDPEWLVDAGSRRQKWI 762
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
DQ+QSLN+Y++ SG+KLD Y+ AW GLKTTYYLRS SA + +KS +
Sbjct: 763 DQAQSLNLYMAAPSGRKLDSLYRRAWRSGLKTTYYLRSQSATHVEKSTLK 812
>gi|402757452|ref|ZP_10859708.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
sp. NCTC 7422]
Length = 946
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/708 (62%), Positives = 563/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + E+ ++ + +P E F+ KGI+ LL+ L
Sbjct: 187 IEQEPNYTYVTARLL----RNELVSTGLEFLGLPTDTLEGDALETFLKKGIELDLLSKDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L+ L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGLSLNE
Sbjct: 243 LDFDLAKLAAAIKPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLSLNEE 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
NRE AI+FY+LLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 NREDRAIEFYDLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+
Sbjct: 423 TWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAHYEAVAKQENM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +T++ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTVKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M + Y S A+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNLAYGSDAAVDFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S+ LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIETSSNLAIERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDSLRT 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIPD+L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 QRGLWDTVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|120556761|ref|YP_961112.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
aquaeolei VT8]
gi|120326610|gb|ABM20925.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinobacter
aquaeolei VT8]
Length = 949
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/707 (63%), Positives = 555/707 (78%), Gaps = 10/707 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK------YKEYFSKFINKGIDNKLL 54
+E++P YS VTARLL+ ++ E + +D+P Y + S FI+ GI +LL
Sbjct: 225 IEREPDYSAVTARLLLEQLRLET----AEALDLPRSLPLAEIYPQALSAFIHAGIRYELL 280
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ LA F+L L NAL PERDLQF +LGL+ LYDRYFLH R+E+PQ FFMR+AMGL+
Sbjct: 281 DEALAAFDLERLGNALKPERDLQFGFLGLQTLYDRYFLHWNKARLELPQVFFMRVAMGLA 340
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E + AI+FY LLSSF++M STPTLFNSGT SQLSSCYL+TV DDL GI+ +I++
Sbjct: 341 LREDDPNARAIEFYELLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVGDDLEGIYGAIRD 400
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 401 NALLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 460
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLE+WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDL ++R+ + WTLFSP DVPD
Sbjct: 461 AYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDREWTLFSPSDVPD 520
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F E Y YE + GKIKLFKKI A LWRK+L++LFETGHPWITFKD CN+
Sbjct: 521 LHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGHPWITFKDPCNL 580
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+K+G+LD +L++T+ A+
Sbjct: 581 RSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIKDGELDVTRLERTVNTAV 640
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+YAV +A+ SNL+HRPVGLG+MGFQD L+ + +PYSS EA++FAD +ME
Sbjct: 641 RMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSSPEAVEFADVAMEQ 700
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y+A AS LA E+G Y +Y+GSLW QGILP DS+ LL+ R L +N + L+W
Sbjct: 701 LSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDGDLSLNTNSRLDWT 760
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R I K GMRNSN +AIAPTATISNI+GVS SIEP Y+NL +KSNLSGEFT +N LV
Sbjct: 761 PVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSLV 820
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD M+ +LKYFDG++ QI RIP +L+ YATAFEI P W++EA + RQKW+
Sbjct: 821 RDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEAAARRQKWL 880
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
DQ+QSLN+Y++ SGKKLD Y+LAW RGLKTTYYLRS+ A A+K+
Sbjct: 881 DQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT 927
>gi|284032752|ref|YP_003382683.1| ribonucleoside-diphosphate reductase subunit alpha [Kribbella
flavida DSM 17836]
gi|283812045|gb|ADB33884.1| ribonucleoside-diphosphate reductase, alpha subunit [Kribbella
flavida DSM 17836]
Length = 806
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/755 (56%), Positives = 563/755 (74%), Gaps = 23/755 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK------EIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YSQ ARLL+ I++EV G+ + Q D+ Y YF +++ GI+ LL
Sbjct: 69 VEQEPQYSQAAARLLLDQIRREVLGRVHGEPRQASQADMRTAYAGYFPRYLAVGIEAGLL 128
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +LA F+L L+ A+ PERDL F +LGL+ LYDRY LHI+ R E+PQ FF+R+AMG++
Sbjct: 129 DHELASFDLDRLAAAIRPERDLDFTFLGLQTLYDRYLLHIDKTRFELPQAFFLRVAMGMA 188
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE A++FY LLSSF FM STPTLFN+GT R QLSSC+L+TV DDL GIF I+
Sbjct: 189 LKEHDREARALEFYELLSSFRFMSSTPTLFNAGTTRPQLSSCFLTTVEDDLAGIFTGIRN 248
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT +R +G+ I+GTNG SQGV+PFLK+ ND A+AV+QGGKRKGA+C
Sbjct: 249 NALLAKYSGGLGNDWTPIRGIGATIRGTNGESQGVVPFLKIANDTAIAVHQGGKRKGAVC 308
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+E+F+ELRKNTGD+RRRTHDMN A WVPDLF++RV + WTLFSP +VP
Sbjct: 309 AYLETWHVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFSPDEVPG 368
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F +Y YE G+I++F+++ A+ LWR++L++LFETGHPWITFKDACN+
Sbjct: 369 LHDLYGAAFAAAYEQYERAADRGEIRVFRRVRAVDLWRRMLTVLFETGHPWITFKDACNL 428
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNT+ +E VCNLGS+NL H+ LD L+ T+R A+
Sbjct: 429 RSPQQHDGVVHSSNLCTEITLNTTVDETAVCNLGSVNLVAHLTPAGLDAGLLRDTVRTAV 488
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID+N+Y +++ +N RHRPVGLG+MGF D L +++PY+S A+ FAD SME
Sbjct: 489 RMLDNVIDVNFYTTPESERANQRHRPVGLGLMGFADALFALRVPYASDAAVAFADTSMEQ 548
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y+A AS++LA E+G Y +YDGSLW QGILP DS++LL + RG L V+ S +L+W
Sbjct: 549 LSYHAIEASSDLAAERGTYRTYDGSLWSQGILPIDSVELLREARGGD-LDVDTSTTLDWD 607
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++++ GMRNSN +AIAPTATISNI GVS SIEPTY NL +KSN+SGEFT N YLV
Sbjct: 608 ALRAKVRRDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFTVANPYLV 667
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK +GLWD+ M+ +LKY DG L++I RIP DLR +YATAFEI P W++ A S RQKWI
Sbjct: 668 ADLKARGLWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAASRRQKWI 727
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN+Y+S SGK LDE Y+ AW GLKTTYYLRS SA + +KS
Sbjct: 728 DQSQSLNLYVSEPSGKALDELYRSAWRHGLKTTYYLRSQSATHVEKS------------- 774
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+++G + L + + + I+D +CE+CQ
Sbjct: 775 -TLRGTDGRLNAVPVEPVAAVCA-IDD-QDCEACQ 806
>gi|299771425|ref|YP_003733451.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
oleivorans DR1]
gi|298701513|gb|ADI92078.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
oleivorans DR1]
Length = 943
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 561/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL E+ + + +P E F+ KG++ LL+P L
Sbjct: 187 IEQEPNYTYVTARLL----SSELVSTGLAFLGLPTDTPENNALEAFLKKGVELDLLSPDL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQ 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 DKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+
Sbjct: 423 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S AI FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S+ LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIETSSNLAVERGSYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 DRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|387816188|ref|YP_005431683.1| ribonucleoside diphosphate reductase subunit alpha [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381341213|emb|CCG97260.1| ribonucleoside diphosphate reductase, alpha subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 952
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/707 (62%), Positives = 554/707 (78%), Gaps = 10/707 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK------YKEYFSKFINKGIDNKLL 54
+E++P YS VTARLL+ ++ E + +D+P Y + S F++ GI +LL
Sbjct: 228 IEREPDYSAVTARLLLEQLRLET----AEALDLPRSLPLAEIYPQALSAFVHAGIRYELL 283
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ LA F+L L NAL P+RDLQF +LGL+ LYDRYFLH R+E+PQ FFMR+AMGL+
Sbjct: 284 DEALAAFDLERLGNALKPQRDLQFGFLGLQTLYDRYFLHWNKARLELPQVFFMRVAMGLA 343
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E + AI+FY LLSSF++M STPTLFNSGT SQLSSCYL+TV DDL GI+ +I++
Sbjct: 344 LREDDPNARAIEFYELLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVGDDLEGIYGAIRD 403
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+C
Sbjct: 404 NALLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 463
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLE+WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDL ++R+ + WTLFSP DVPD
Sbjct: 464 AYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRDWTLFSPSDVPD 523
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G F E Y YE + GKIKLFKKI A LWRK+L++LFETGHPWITFKD CN+
Sbjct: 524 LHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGHPWITFKDPCNL 583
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+K+G+LD +L++T+ A+
Sbjct: 584 RSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIKDGELDVTRLERTVNTAV 643
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+YAV +A+ SNL+HRPVGLG+MGFQD L+ + +PYSS EA++FAD +ME
Sbjct: 644 RMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSSPEAVEFADVAMEQ 703
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y+A AS LA E+G Y +Y+GSLW QGILP DS+ LL+ R L +N L+W
Sbjct: 704 LSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDGDLSLNTHSRLDWT 763
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R I K GMRNSN +AIAPTATISNI+GVS SIEP Y+NL +KSNLSGEFT +N LV
Sbjct: 764 PVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSLV 823
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK +GLWD M+ +LKYFDG++ QI RIP +L+ YATAFEI P W++EA + RQKW+
Sbjct: 824 RDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEAAARRQKWL 883
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
DQ+QSLN+Y++ SGKKLD Y+LAW RGLKTTYYLRS+ A A+K+
Sbjct: 884 DQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT 930
>gi|427425482|ref|ZP_18915570.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-136]
gi|425697684|gb|EKU67352.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-136]
Length = 944
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/706 (62%), Positives = 559/706 (79%), Gaps = 3/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARLL C + G + F+ KG++ LL+P L +
Sbjct: 187 IEQEPNYTYVTARLL--CNELVSTGLTFLGLSTDTPENNALEAFLKKGVELDLLSPDLLD 244
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L LS A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE ++
Sbjct: 245 FDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQDK 304
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+LSK
Sbjct: 305 EERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAMLSK 364
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 365 WAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 424
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+ G
Sbjct: 425 HLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDLTG 484
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 485 AEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLDNV
Sbjct: 544 VGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YYA
Sbjct: 604 IDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYYAI 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
S+ LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR ++
Sbjct: 664 ETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRAKV 723
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK++
Sbjct: 724 QKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALKER 783
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+QSL
Sbjct: 784 GLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQSL 843
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
N+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 844 NLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|375133631|ref|YP_004994281.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
calcoaceticus PHEA-2]
gi|325121076|gb|ADY80599.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
calcoaceticus PHEA-2]
Length = 944
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/706 (62%), Positives = 559/706 (79%), Gaps = 3/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARLL C + G + F+ KG++ LL+P L +
Sbjct: 187 IEQEPNYTYVTARLL--CNELVSTGLTFLGLSTDTPENNALEAFLKKGVELDLLSPDLLD 244
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L LS A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE ++
Sbjct: 245 FDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQDK 304
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+LSK
Sbjct: 305 EERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAMLSK 364
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 365 WAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 424
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+ G
Sbjct: 425 HLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDLTG 484
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 485 AEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLDNV
Sbjct: 544 VGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YYA
Sbjct: 604 IDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYYAI 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
S+ LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR ++
Sbjct: 664 ETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRAKV 723
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK++
Sbjct: 724 QKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALKER 783
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+QSL
Sbjct: 784 GLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQSL 843
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
N+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 844 NLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|293609144|ref|ZP_06691447.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829717|gb|EFF88079.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 944
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/706 (62%), Positives = 559/706 (79%), Gaps = 3/706 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ VTARLL C + G + F+ KG++ LL+P L +
Sbjct: 187 IEQEPNYTYVTARLL--CNELVSTGLTFLGLSTDTPENNALEAFLKKGVELDLLSPDLLD 244
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L LS A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE ++
Sbjct: 245 FDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEQDK 304
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNLLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+LSK
Sbjct: 305 EERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAMLSK 364
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 365 WAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETW 424
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + WTLF+P + PDLH+ G
Sbjct: 425 HLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETPDLHDLTG 484
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF E Y YE+ K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQQH
Sbjct: 485 AEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQQH 543
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLDNV
Sbjct: 544 VGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLDNV 603
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYYAV +AK SNL+HRPVG+GIMGFQD L+ M I Y S A+ FAD+SME+I YYA
Sbjct: 604 IDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESMEVISYYAI 663
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
S+ LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR ++
Sbjct: 664 ETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRAKV 723
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK++
Sbjct: 724 QKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALKER 783
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+QSL
Sbjct: 784 GLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQSL 843
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
N+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 844 NLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|358012119|ref|ZP_09143929.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
sp. P8-3-8]
Length = 941
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/708 (62%), Positives = 564/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL + ++ +K + + E ++ KGI+ +LL+P+L
Sbjct: 186 IEQEPNYTYVTARLL----RDDLVATGLKFLGLATDTIEGDALETYLKKGIELELLSPEL 241
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F+L+ L+ A+ PER QF YLGL+ L+DRYF+H +R E+PQ FFMR++MGLSLNE
Sbjct: 242 LNFDLAKLAAAIKPERSNQFTYLGLQTLFDRYFIHSNDVRFELPQLFFMRVSMGLSLNEE 301
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
NRE AI+FY+LLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NALL
Sbjct: 302 NREDRAIEFYDLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIQDDLYDIYGAMRDNALL 361
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 362 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 421
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RVI+ + WTLF+P + PDLH+
Sbjct: 422 TWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVIEDAEWTLFTPSETPDLHDL 481
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE K + L KKI A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 482 TGVEFAERYAYYEGVAKESNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 540
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H++ G LD KL +T++ A+RMLD
Sbjct: 541 QHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVQHVQGGALDREKLARTVKTAVRMLD 600
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV++A+ SN++HRPVG+GIMGFQD L+ + + Y S A+ FAD+SME+I Y+
Sbjct: 601 NVIDINYYAVEQARNSNMKHRPVGMGIMGFQDALYELGMGYGSDAAVDFADESMEVISYF 660
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL ++ K R + +V+ ++ L+W LR
Sbjct: 661 AIQTSSDLAVERGVYSTFKGSLWDQGILPIDSLDIVAKSRPERMFEVDRTQRLDWDTLRA 720
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 721 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 780
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 781 DRGLWDSVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 840
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YIS +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 841 SLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 888
>gi|407716180|ref|YP_006837460.1| ribonucleoside diphosphate reductase subunit alpha [Cycloclasticus
sp. P1]
gi|407256516|gb|AFT66957.1| Ribonucleoside-diphosphate reductase, alpha subunit [Cycloclasticus
sp. P1]
Length = 930
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/708 (62%), Positives = 556/708 (78%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
++ DP YSQ+ ARLL+ ++ E Q ++ Y EYF +INK + LL
Sbjct: 199 IDTDPDYSQLAARLLLNNLRTEALSFTHQQTTSRSQAEMLADYPEYFKAYINKAVSLNLL 258
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L+ F+L L+ AL ERD F+YLGL+ LYDRYF+H + R E+PQ FFMR+AMGL+
Sbjct: 259 DEELSRFDLDKLAEALQSERDFNFSYLGLQTLYDRYFIHTKDTRFELPQAFFMRVAMGLA 318
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE RE+ AI+FY LLSSF+FM STPTLFN+GT R QLSSCYL+TV DDL I+ S ++
Sbjct: 319 INEVEREERAIEFYQLLSSFDFMSSTPTLFNAGTPRPQLSSCYLTTVKDDLADIYSSFRD 378
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWTQVR+LG+ IKGTNG+SQGVIPFLKV ND AVAVNQGGKRKGA+C
Sbjct: 379 NALLSKYAGGLGNDWTQVRALGAEIKGTNGQSQGVIPFLKVANDTAVAVNQGGKRKGAVC 438
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIE F+ELRKNTGD+RRRTHDMN A W+PDLFM+RVI++ WTLFSP +VP
Sbjct: 439 AYLETWHIDIEAFLELRKNTGDERRRTHDMNTANWIPDLFMQRVIEQDDWTLFSPDEVPH 498
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH G+ F+++Y L E + + G+IKL K I A+ LWRK+L MLFETGHPWITFKD CNI
Sbjct: 499 LHALTGEAFKKAYQLCEQKAQQGEIKLHKTIKAVDLWRKMLGMLFETGHPWITFKDPCNI 558
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
R QHVG+++SSNLCTEITL+TS+ EI VCNLGSINL H++ +LD + L+KTI AM
Sbjct: 559 RYTNQHVGVVNSSNLCTEITLHTSEQEIAVCNLGSINLPAHLQGNELDLVHLEKTITTAM 618
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVID NYY+V +A+ SNL+HRPVGLGIMGFQD L +KIPYSS++A++FAD+SME+
Sbjct: 619 RMLDNVIDYNYYSVPQARNSNLKHRPVGLGIMGFQDSLQQLKIPYSSEQAVEFADKSMEL 678
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS +LA E+G Y S+ GSLW +GILP DSLK L + RG +YL+V+ S++L+W
Sbjct: 679 ISYYAISASCKLAAERGSYPSFKGSLWSKGILPIDSLKTLAELRG-QYLQVDQSQTLDWD 737
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ GMRNSNC+AIAPTATISNI GVS SIEPTY+N+ +KSNLSGEFT IN +LV
Sbjct: 738 SLRQQVMNTGMRNSNCLAIAPTATISNICGVSQSIEPTYQNMFVKSNLSGEFTVINTHLV 797
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK+ GLWDE MI +LKY+DG++ I R+P+ L+ +YATAFEI W+IEA RQKW+
Sbjct: 798 ADLKELGLWDEVMINDLKYYDGSVQHIERVPEALKALYATAFEIDSRWLIEAAGRRQKWL 857
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
DQSQSLN+Y++ SG+KLD Y LAW RGLK TYYLRSI A + ++++
Sbjct: 858 DQSQSLNLYMAEASGQKLDSLYMLAWARGLKCTYYLRSIGATHMEQND 905
>gi|385333390|ref|YP_005887341.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
adhaerens HP15]
gi|311696540|gb|ADP99413.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
adhaerens HP15]
Length = 921
Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/703 (63%), Positives = 551/703 (78%), Gaps = 2/703 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK--YKEYFSKFINKGIDNKLLNPKL 58
+E++P YS VTARLL+ ++ E I +P+ Y + S F+ GI +LL+ L
Sbjct: 197 IEREPDYSAVTARLLLEQLRLENAAALGLPISLPLAEIYPQALSAFVEAGIRYELLDEAL 256
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
A F+L L AL PERDLQF +LGL+ LYDRYFLH R+E+PQ FFMR+AMGL+L E
Sbjct: 257 AAFDLERLGAALQPERDLQFGFLGLQTLYDRYFLHWNKARLELPQVFFMRVAMGLALRED 316
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FYNLLSSF++M STPTLFNSGT SQLSSCYL+TV DDL I+ +I++NA+L
Sbjct: 317 DPNARAIEFYNLLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVGDDLEDIYGAIRDNAML 376
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE
Sbjct: 377 SKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLE 436
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
+WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDL ++R+ + WTLFSP D PDLH+
Sbjct: 437 SWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRDWTLFSPSDAPDLHDL 496
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G F E Y YE + GKIKLFKKI A LWRK+L++LFETGHPWITFKD CN+RSPQ
Sbjct: 497 YGNAFRERYEHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGHPWITFKDPCNLRSPQ 556
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QH G++HSSNLCTEITLNTS +EI VCNLGS+NLT H+ NG+LD +L++T+ A+RMLD
Sbjct: 557 QHRGVVHSSNLCTEITLNTSADEIAVCNLGSVNLTAHIANGELDVQRLEQTVNTAVRMLD 616
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +A+ SNL+HRPVGLGIMGFQD L+ + +PYSS EA++FAD +ME + Y+
Sbjct: 617 NVIDINYYAVPQARNSNLKHRPVGLGIMGFQDALYQLGLPYSSPEAVEFADVAMEQLSYF 676
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS LA E+G Y SY+GSLW QGILP DS+ LL++ R L VN + L+W +R
Sbjct: 677 AIRASATLAGERGAYESYEGSLWQQGILPIDSINLLKENRREGDLSVNTNARLDWSPVRE 736
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
I GMRNSN +AIAPTATISNI+GVS SIEP Y+NL +KSNLSGEFT +N LV++LK
Sbjct: 737 LIATNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSLVRDLK 796
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LKYFDG++ QI RIP++L+ YATAFEI W++EA + RQKW+DQ+Q
Sbjct: 797 AEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATAFEIDARWLVEAAARRQKWLDQAQ 856
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
SLN+Y++ SGKKLD Y+LAW RGLKTTYYLRS+ A A+K+
Sbjct: 857 SLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT 899
>gi|425745237|ref|ZP_18863282.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-323]
gi|425488664|gb|EKU54992.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii WC-323]
Length = 946
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/708 (61%), Positives = 562/708 (79%), Gaps = 7/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKE--YFSKFINKGIDNKLLNPKL 58
+E++P Y+ VTARLL E+ ++ + +P E F+ KGI+ LL+ L
Sbjct: 187 IEQEPNYTYVTARLL----SNELVSTGLEFLGLPSDTPEGNALETFLKKGIELDLLSADL 242
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+F+L L+ A+ PER QF YLGL+ L+DRYF+H G+R E+PQ FFMR++MGL+LNE
Sbjct: 243 LDFDLEKLAAAIKPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGLALNEE 302
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
++E AI+FY+LLSSF++M STPTLFNSGT+R QLSSCYL+T+ DDLY I+ ++++NA+L
Sbjct: 303 HKEDRAIEFYDLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMRDNAML 362
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+L S IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+CAYLE
Sbjct: 363 SKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLE 422
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFM+RV + + WTLF+P + PDLH+
Sbjct: 423 TWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETPDLHDL 482
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G EF E Y YE K + L KK+ A LWRK+LSMLFETGHPWITFKD CN+RSPQ
Sbjct: 483 TGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCNLRSPQ 541
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNT+++EI VCNLGSINL H++ G LD KL +TI+ A+RMLD
Sbjct: 542 QHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTAVRMLD 601
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +AK SN++HRPVG+GIMGFQD L+ M + Y S A+ FAD+SME+I YY
Sbjct: 602 NVIDINYYAVPQAKNSNMKHRPVGMGIMGFQDALYEMNLAYGSDAAVDFADESMEVISYY 661
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S++LA E+G YS++ GSLWDQGILP DSL+++ K R + +V+ ++ L+W LR
Sbjct: 662 AIQTSSDLAIERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDWDTLRA 721
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+++K GMRNSN +AIAPTATISNI GVS SIEPT++NL++KSNLSGEFT IN YLV+ LK
Sbjct: 722 KVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYLVRALK 781
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLWD M+ +LK+F+G++ +I+RIP++L+ I+ATAFE+ WI++A S RQKWIDQ+Q
Sbjct: 782 ERGLWDSVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKWIDQAQ 841
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
SLN+YI+ +GKKLD TYK+AWLRGLKTTYYLR++ A A+KS G
Sbjct: 842 SLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTG 889
>gi|375095903|ref|ZP_09742168.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharomonospora marina XMU15]
gi|374656636|gb|EHR51469.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharomonospora marina XMU15]
Length = 817
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/755 (56%), Positives = 559/755 (74%), Gaps = 12/755 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEIK--QIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS ARLL+ ++ E G+ ++ Q ++ +Y +YF ++ I+ +LL
Sbjct: 69 VEREPNYSLGCARLLLDKLRGEALSHLAGEAVQADQAELESRYADYFRDYLGHAIECELL 128
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA F+L ++ A+ P RDL +LGL+ LYDRYFLH G R E+PQ FFMR+AMGL+
Sbjct: 129 DPELATFDLDAITAAIRPARDLDLGFLGLQTLYDRYFLHERGKRFELPQAFFMRVAMGLA 188
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE A++FY+LLS+ FM STPTLFNSGT R QLSSC+L+TV DDL IFE +
Sbjct: 189 IREDDREASAVEFYDLLSTLRFMASTPTLFNSGTTRPQLSSCFLTTVADDLGSIFEGYRN 248
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ IKGTNGRSQGV+PFLK+ ND AVAVNQGGKRKGA C
Sbjct: 249 NALLAKYSGGLGNDWTPVRGLGAHIKGTNGRSQGVVPFLKIANDTAVAVNQGGKRKGAAC 308
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+D+EEF++LRKNTGDDRRRTHDMN A WVPD F++RV WTLFSP +V
Sbjct: 309 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADGEWTLFSPDEVAG 368
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G EF Y YE G+I++F+++ A LWR++L+MLFETGHPWITFKD CN+
Sbjct: 369 LHDTYGAEFARRYRAYERAADAGEIRVFRRVRARSLWRRMLTMLFETGHPWITFKDPCNL 428
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT EI VCNLGS+NL LH+ LD KL++T+ A+
Sbjct: 429 RSPQQHVGVVHSSNLCTEITLNTGAGEIAVCNLGSVNLALHVTAAGLDTEKLERTVNTAV 488
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y V +A+ +NLRHRPVGLG+MGF D L + +P +S+EA++FAD+SME
Sbjct: 489 RMLDNVIDINFYTVPQARTANLRHRPVGLGLMGFTDALFELGLPPASREAVEFADRSMEQ 548
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y+A AS LA ++GRY +++GSLW +GILP DSL+LL +R L V+ + +L+W
Sbjct: 549 LSYFAIAASVRLAAQRGRYETFEGSLWSRGILPIDSLRLLAAQREDGELDVDTTTTLDWD 608
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR R++ GMRNSN +AIAPTATISNI GV SIEP + NL +KSN+SGEFT +N +LV
Sbjct: 609 GLRERVRTTGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPHLV 668
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK++GLWDE+M+ LKY DG+++ I RIPDDL+++YATAFE+ P W+I+A + RQKWI
Sbjct: 669 RDLKRRGLWDEAMVTELKYHDGSVANIDRIPDDLKRLYATAFEVDPRWLIDAAARRQKWI 728
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQ+QSLN+Y++ SG+KLDE Y+ AW GLKTTYYLR+ +A +KS +N
Sbjct: 729 DQAQSLNLYLAAPSGRKLDELYRHAWRSGLKTTYYLRASAATQVEKSTLRGTDGRLNAVA 788
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ + + C I D +CE+CQ
Sbjct: 789 PAVPVASGEIGG-PEPAACRI-----DEPDCEACQ 817
>gi|358449491|ref|ZP_09159975.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
manganoxydans MnI7-9]
gi|357226246|gb|EHJ04727.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
manganoxydans MnI7-9]
Length = 921
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/703 (62%), Positives = 547/703 (77%), Gaps = 2/703 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK--YKEYFSKFINKGIDNKLLNPKL 58
+E++P YS VTARLL+ ++ E I +P+ Y + S F+ GI +LL+ L
Sbjct: 197 IEREPDYSAVTARLLLEQLRLENAAALGLPISLPLAEIYPQALSAFVEAGIRYELLDDAL 256
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
A F+L L AL P+RDLQF +LGL+ LYDRYFLH R+E+PQ FFMR+AMGL+L E
Sbjct: 257 AAFDLERLGAALQPKRDLQFGFLGLQTLYDRYFLHWNKARLELPQVFFMRVAMGLALRED 316
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FYNLLSSF++M STPTLFNSGT SQLSSCYL+TV DDL I+ +I++NA+L
Sbjct: 317 DPNARAIEFYNLLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVGDDLEDIYGAIRDNAML 376
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+LG+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE
Sbjct: 377 SKWAGGLGNDWTPVRALGAHIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLE 436
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
+WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDL ++R+ + WTLFSP D DLH+
Sbjct: 437 SWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRDWTLFSPSDASDLHDL 496
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G F E Y YE + GKI LF+KI A LWRK+L++LFETGHPWITFKD CN+RSPQ
Sbjct: 497 YGNAFRERYEYYEALAEQGKINLFRKIPAKQLWRKMLTVLFETGHPWITFKDPCNLRSPQ 556
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QH G++HSSNLCTEITLNTS EI VCNLGS+NL H+ NG+LD +L++T+ A+RMLD
Sbjct: 557 QHRGVVHSSNLCTEITLNTSAEEIAVCNLGSVNLAAHIANGELDVQRLEQTVNTAVRMLD 616
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYYAV +A+ SNLRHRPVGLG MGFQD L+ + +PYSS EAI+FAD +ME + Y+
Sbjct: 617 NVIDINYYAVPQARNSNLRHRPVGLGFMGFQDALYQLGLPYSSSEAIEFADLAMEQLSYF 676
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS LA E+G Y SY+GSLW QGILP DS+ LL++ R L VN + L+W +R
Sbjct: 677 AIRASASLAGERGAYESYEGSLWQQGILPIDSINLLKENRREGDLSVNTNARLDWSPVRE 736
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
I K GMRNSN +AIAPTATISNI+GVS SIEP Y+NL +KSNLSGEFT +N LV++LK
Sbjct: 737 LIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSLVRDLK 796
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LKYFDG++ QI RIP++L+ YATAFEI W++EA + RQKW+DQ+Q
Sbjct: 797 AEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATAFEIDARWLVEAAARRQKWLDQAQ 856
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
SLN+Y++ SGKKLD Y+LAW RGLKTTYYLRS+ A A+K+
Sbjct: 857 SLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT 899
>gi|433606697|ref|YP_007039066.1| Ribonucleoside-diphosphate reductase [Saccharothrix espanaensis DSM
44229]
gi|407884550|emb|CCH32193.1| Ribonucleoside-diphosphate reductase [Saccharothrix espanaensis DSM
44229]
Length = 954
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/707 (58%), Positives = 547/707 (77%), Gaps = 6/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP 56
+E +P YS V ARLL+ +++EV G+ ++ + Y +YF +++ G+ L+P
Sbjct: 187 VETEPNYSFVAARLLLDQLRREVLTRVAGRPVEATAEQLSYVDYFPEYVRLGVALDRLDP 246
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
L F+++ ++ A+ PERD F++LG++ LYDRYFLH G+R E+PQ FFMR+AMGL+L
Sbjct: 247 ALESFDVARIAAAIRPERDAMFDFLGMQTLYDRYFLHDHGVRYELPQAFFMRVAMGLALR 306
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
E +RE AI+FY LLS+F+FMCSTPTLFNSGT R+QLSSC+L+TV DDL IF+S + NA
Sbjct: 307 EDDREARAIEFYELLSAFDFMCSTPTLFNSGTTRAQLSSCFLTTVDDDLKSIFQSYQNNA 366
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LL+K++GGLGNDWT VR +G+ IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA CAY
Sbjct: 367 LLAKFSGGLGNDWTPVRGMGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAACAY 426
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH+D+EEF++LRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP + PDLH
Sbjct: 427 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAEWTLFSPDETPDLH 486
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G +F Y YE G+I++FK++ A LWR++L+MLFETGHPWITFKD CN+RS
Sbjct: 487 DAYGLDFTARYRGYEEAADRGEIRVFKRVRATDLWRRMLTMLFETGHPWITFKDPCNLRS 546
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQQH G++HSSNLCTEITLNTS +E+ VCNLGS+NL H+ LD +L T+ A+RM
Sbjct: 547 PQQHTGVVHSSNLCTEITLNTSADEVAVCNLGSVNLANHVTAHGLDAERLAHTVHTAVRM 606
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYY + +A SNLRHRP+GLG+MGF D L +++ S EA++FAD+SME I
Sbjct: 607 LDNVIDINYYTIPEASRSNLRHRPIGLGLMGFSDALFTLRLVPGSPEAVEFADRSMEHIG 666
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y+A AS +LA E+G Y S+DGSLW +G+LP DS+ LL + RG L ++ S +L+W+ L
Sbjct: 667 YHALSASADLARERGSYESFDGSLWSRGVLPIDSIALLAEARGG-VLAMDTSSTLDWETL 725
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +++ GMRNSN +AIAPTATISNI GV SIEP +RNL++KSN+SG+FT +NR+LV +
Sbjct: 726 RAKVRG-GMRNSNTMAIAPTATISNICGVGQSIEPLFRNLYVKSNMSGDFTVLNRFLVAD 784
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK LWDE+M+++LKYFDG+++ I R+PDDL+ +YATAFE+S W+IEA S RQKWIDQ
Sbjct: 785 LKALDLWDEAMVSDLKYFDGSVAPIDRVPDDLKALYATAFEVSSEWLIEAASRRQKWIDQ 844
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
+QSLN+YI+ +G+KLD Y+LAW GLKTTYYLRS +A +KS
Sbjct: 845 AQSLNLYIAAPNGRKLDNLYRLAWHSGLKTTYYLRSTAATSVEKSTL 891
>gi|338733551|ref|YP_004672024.1| ribonucleoside-diphosphate reductase subunit alpha [Simkania
negevensis Z]
gi|336482934|emb|CCB89533.1| ribonucleoside-diphosphate reductase subunit alpha [Simkania
negevensis Z]
Length = 1083
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/705 (60%), Positives = 546/705 (77%), Gaps = 1/705 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP YS + +RLL+ I +E G E + K+ +YF ++I GI + L+PKL E
Sbjct: 336 IEKDPAYSTIASRLLLDVIYRETLGIEATDPKLEEKHHQYFKEYIEHGIKIERLDPKLKE 395
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ A+ ERD +F YLG++ LYDRYF+H G RIE PQ F+MR+AMGL+L E +
Sbjct: 396 FDLETLAKAMKLERDDKFKYLGMQTLYDRYFIHDNGRRIETPQIFWMRVAMGLALKEKEK 455
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
K I+FYN+LS F+++ +TPTLFNSGT SQLSSCY+STV DDL IF++I ++A LSK
Sbjct: 456 TKYTIEFYNVLSQFHYLSATPTLFNSGTTHSQLSSCYISTVMDDLEHIFKTISDDAQLSK 515
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR G+ IKGTNG+SQG+IPFLKV ND AVAVNQGGKRKGA+C+YLETW
Sbjct: 516 WAGGLGNDWTNVRGTGALIKGTNGQSQGIIPFLKVANDTAVAVNQGGKRKGALCSYLETW 575
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIE+F+ELRKNTGD+RRRTHD N A W+PDLFMKRV + WTLFSP +VPDLH+ +G
Sbjct: 576 HIDIEDFLELRKNTGDERRRTHDTNTANWIPDLFMKRVKENGHWTLFSPDEVPDLHDLYG 635
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
FE+ Y YE + GKI+L+KK+ AL LWRK+LSMLFETGHPWITFKD CNIRSPQ H
Sbjct: 636 AAFEKRYTTYEKMAESGKIRLYKKVEALQLWRKMLSMLFETGHPWITFKDPCNIRSPQDH 695
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEITLN S+ E VCNLGS+NL H+ LD KL +T++ AMRMLDNV
Sbjct: 696 VGVVHSSNLCTEITLNNSREETAVCNLGSVNLVEHVTEKGLDEKKLARTVQTAMRMLDNV 755
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+Y + + K +N HR VGLG MGFQD L+I+ + Y+S EA++FAD+SMEMI YY+
Sbjct: 756 IDINFYPIPETKRANTTHRAVGLGFMGFQDALNILGLSYASHEAVEFADKSMEMISYYSI 815
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS+ELA+E+ Y SY GS W++G+LP D++ LLEKERG K ++++ S SL+W+K+R I
Sbjct: 816 LASSELAKERNPYPSYKGSKWERGLLPIDTIDLLEKERGEK-VEMDRSTSLDWRKVRESI 874
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+K GMRNSNC+AIAPTATI+NI GV+ S EP Y+NL+ KSNLSGEFT N YLV +LKK
Sbjct: 875 QKHGMRNSNCMAIAPTATIANITGVNPSNEPIYKNLYAKSNLSGEFTISNPYLVAKLKKL 934
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
+WD+ MI +LKYFDG++ +I R+P++L+K + TAFEI P WIIE GS RQKWIDQ+QSL
Sbjct: 935 KMWDDEMIDDLKYFDGSVQEIERLPEELKKQFLTAFEIDPEWIIECGSRRQKWIDQAQSL 994
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
N+Y++ SGKKL Y L+W +GLKT YYLR+ A +KS ++
Sbjct: 995 NLYLAEPSGKKLHNMYMLSWRKGLKTNYYLRTTGATQIEKSTLDI 1039
>gi|256377254|ref|YP_003100914.1| ribonucleoside-diphosphate reductase subunit alpha [Actinosynnema
mirum DSM 43827]
gi|255921557|gb|ACU37068.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema
mirum DSM 43827]
Length = 950
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/707 (58%), Positives = 549/707 (77%), Gaps = 6/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKE----VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP 56
+E +P YS +ARLL+ +++E V G+ ++ + Y +YF ++ G+ L+P
Sbjct: 191 VETEPDYSFASARLLLDKLRREALSHVAGEPVEATGEQMSYVDYFPAYVELGVSVDRLDP 250
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+L F+L L+ A+ PERDL F++LG++ LYDRYFLH +G+R E+PQ FFMR+AMGL+L
Sbjct: 251 ELRTFDLPRLAAAIRPERDLAFDFLGMQTLYDRYFLHDDGVRYELPQAFFMRVAMGLALR 310
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
E +RE AI+FY LLSSF+FMCSTPTLFNSGT R QLSSC+L+TV DDL IF + NA
Sbjct: 311 EDDREARAIEFYGLLSSFDFMCSTPTLFNSGTTRPQLSSCFLTTVDDDLDAIFRGYRNNA 370
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LL+KY+GGLGNDWT VR +G+ IKGTNG+SQGV+PFLK+ ND AVAVNQGGKRKGA CAY
Sbjct: 371 LLAKYSGGLGNDWTPVRGMGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAACAY 430
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP + PDLH
Sbjct: 431 LETWHVDVEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAEWTLFSPDETPDLH 490
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+G F + Y YE G+I++ +++ A+ LWR++L++LFETGHPWITFKD CN+RS
Sbjct: 491 ELYGTAFAQRYRAYEEAADRGEIRVHRRVRAVDLWRRMLTVLFETGHPWITFKDPCNVRS 550
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQQH G++HSSNLCTEITLNTS +E+ VCNLGSINL H+ LD +L +T R A+RM
Sbjct: 551 PQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLANHVTPTGLDRDRLARTTRTAVRM 610
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDIN+Y + +A+ SNLRHRPVGLG+MGF D L + +IPY+S EA++FAD SME+I
Sbjct: 611 LDNVIDINFYTIPEARRSNLRHRPVGLGLMGFADSLFVQRIPYASSEAVEFADLSMELIS 670
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
++A AS +LA E+G Y S++GSLW +G+LP DS+ LL RG L ++ S +L+W +
Sbjct: 671 FHALDASADLAAERGSYESFEGSLWSRGVLPIDSIALLADARGGA-LDMDTSSTLDWSSV 729
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R++ ++ GMRNSN +AIAPTATISNI GV SIEP YRNL +K+N+SG+FT +NR+LV +
Sbjct: 730 RDKARR-GMRNSNVMAIAPTATISNICGVGQSIEPLYRNLFVKANMSGDFTVLNRHLVAD 788
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK +GLWD +M+++LKYFDG L+ + R+P +L+ +YATAFE+S +W++EA S RQKWIDQ
Sbjct: 789 LKARGLWDAAMVSDLKYFDGALTAVDRVPAELKALYATAFELSSDWLVEAASRRQKWIDQ 848
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
+QSLN+Y++ SG+ LDE Y+LAW +GLKTTYYLRS SA + +KS
Sbjct: 849 AQSLNLYLAAPSGRALDELYRLAWRKGLKTTYYLRSASATHVEKSTL 895
>gi|399546853|ref|YP_006560161.1| ribonucleoside-diphosphate reductase subunit alpha [Marinobacter
sp. BSs20148]
gi|399162185|gb|AFP32748.1| Ribonucleoside-diphosphate reductase subunit alpha [Marinobacter
sp. BSs20148]
Length = 929
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/705 (61%), Positives = 545/705 (77%), Gaps = 8/705 (1%)
Query: 1 MEKDPVYSQVTARLLMY-----CIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLL+ + + +D+ Y + FIN GI +LL+
Sbjct: 204 IEREPDYSAVTARLLLEQLRLESVTALKLDTSLSLVDV---YPQALGTFINAGIRYELLD 260
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
+A F++ L AL PERDLQF +LGL+ LYDRYFLH + R+E+PQ FFMR+AMGLSL
Sbjct: 261 EAMAAFDMERLGAALKPERDLQFGFLGLQTLYDRYFLHWKEDRLELPQVFFMRVAMGLSL 320
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + AI+FY+LLSSF++M STPTLFNSGT SQLSSCYL+TV DDL I+ SI++N
Sbjct: 321 REDDPNSRAIEFYDLLSSFDYMSSTPTLFNSGTRHSQLSSCYLTTVDDDLEAIYGSIRDN 380
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR++G+ IKGTNG+SQG++PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 381 AMLSKWAGGLGNDWTPVRAMGARIKGTNGQSQGIVPFLKVVNDTAVAVNQGGKRKGAVCA 440
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE+WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDL ++R+ + WTLFSP DVPDL
Sbjct: 441 YLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLVERMRQDRDWTLFSPNDVPDL 500
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G F E Y YE GKI+LFK I A LWRK+L++LFETGHPWITFKD CN+R
Sbjct: 501 HDLYGNAFRERYQHYETLAAEGKIELFKTIPAKQLWRKMLTVLFETGHPWITFKDPCNLR 560
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
SPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ NG+LD +L++T+ A+R
Sbjct: 561 SPQQHKGVVHSSNLCTEITLNTSADEIAVCNLGSVNLVAHISNGELDVKRLERTVDTAVR 620
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNVIDIN+YAV +A+ SNL+HRPVGLG+MGFQD L+ +++ Y+S +A++FAD +ME +
Sbjct: 621 MLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYALRLSYTSPQAVEFADVAMEQL 680
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A AS LA E+G Y SY+GSLW Q ILP DS++LL+ R L VN L+W
Sbjct: 681 SYFAIRASARLAAERGAYESYEGSLWSQNILPIDSIELLKAARLEGDLSVNTDSRLDWAP 740
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R+ I K GMRNSN +AIAPTATISNI+GVS SIEP Y+NL +KSNLSGEFT +N LV+
Sbjct: 741 VRDLIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSLVR 800
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK +GLWD M+ +LKY+DG++ QI RIP +L+ YATAFEI W++EA S RQKW+D
Sbjct: 801 DLKAEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDTRWLVEAASRRQKWLD 860
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKK 700
Q QSLN+Y++ SGKKLDE Y+LAW RGLKTTYYLRS+ A A +
Sbjct: 861 QGQSLNLYMAQPSGKKLDELYQLAWERGLKTTYYLRSLGATGANE 905
>gi|149375673|ref|ZP_01893442.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
DG893]
gi|149360075|gb|EDM48530.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
DG893]
Length = 921
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/703 (61%), Positives = 546/703 (77%), Gaps = 2/703 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK--YKEYFSKFINKGIDNKLLNPKL 58
+E++P YS VTARLL+ ++ E + +P+ Y + S FI +GI +LL+ +
Sbjct: 197 IEQEPDYSAVTARLLLEQLRLETATALKLPLSLPLAEIYPQALSTFIEQGIHYELLDEAM 256
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
A F+L L AL PERD QF +LGL+ LYDRYFL+ +G R+E+PQ FFMR++MGL+L E
Sbjct: 257 AAFDLERLGAALKPERDYQFGFLGLQTLYDRYFLNWKGDRLELPQVFFMRVSMGLALQED 316
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FY+LLSSF++M STPTLFNSGT SQLSSCYL+TV DDL GI+ +I++NA+L
Sbjct: 317 DPNARAIEFYDLLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVQDDLEGIYGAIRDNAML 376
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE
Sbjct: 377 SKWAGGLGNDWTPVRALGSHIKGTNGSSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLE 436
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
+WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDL ++R+ WTLFSP D PDLH+
Sbjct: 437 SWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRSDQDWTLFSPNDTPDLHDL 496
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G F E Y YE G+I LFK +SA LWRK+L++LFETGHPWITFKD CN+RSPQ
Sbjct: 497 YGNAFRERYQEYEAMAARGEITLFKTVSAKQLWRKMLTVLFETGHPWITFKDPCNLRSPQ 556
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QH G++HSSNLCTEITLNTS +EI VCNLGSINL H+ NG+LD +L++T+ A+RMLD
Sbjct: 557 QHRGVVHSSNLCTEITLNTSADEIAVCNLGSINLAAHVHNGELDVQRLERTVNTAVRMLD 616
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NV+DINYYAV +A+ SN +HRPVGLG+MGFQD L+ + +PY+S EA++FAD +ME I Y+
Sbjct: 617 NVVDINYYAVPQARNSNFKHRPVGLGLMGFQDALYRLNLPYTSAEAVEFADVAMEQISYF 676
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS LA E+G Y +Y+GSLW +GILP DS+ LL+ R L +N L+W +R
Sbjct: 677 AIRASAVLAGERGAYETYEGSLWHEGILPIDSINLLKANRREGDLSLNTDTLLDWTPVRE 736
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
I + GMRNSN +AIAPTATISNI+GVS SIEP Y+NL +KSNLSGEFT +N LV++LK
Sbjct: 737 LIARNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSLVRDLK 796
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LKYFDG++ QI RIP L+ YATAFEI W++EA + RQKW+DQ+Q
Sbjct: 797 AEGLWDNVMVNDLKYFDGSVQQIDRIPAALKARYATAFEIDARWLVEAAARRQKWLDQAQ 856
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
SLN+Y++ SGKKLDE Y+L+W RGLKTTYYLRS+ A A+K+
Sbjct: 857 SLNLYMAEPSGKKLDELYQLSWERGLKTTYYLRSLGATGAEKT 899
>gi|114321251|ref|YP_742934.1| ribonucleoside-diphosphate reductase subunit alpha [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227645|gb|ABI57444.1| ribonucleoside-diphosphate reductase, alpha subunit
[Alkalilimnicola ehrlichii MLHE-1]
Length = 928
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/757 (57%), Positives = 558/757 (73%), Gaps = 28/757 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK--------YKEYFSKFINKGIDNK 52
+E++P Y V ARLL Q ++ G+ ++ +D P Y +YF+++I +G++ +
Sbjct: 192 IEQEPAYGHVAARLL----QHQLNGEALRFLDFPYDGAPGADPGYTDYFARYIRRGVELE 247
Query: 53 LLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
LL+ +L F+L L+ AL+PERDLQFNYLGL+ LYDRY H +G R E+PQ FFMR+AMG
Sbjct: 248 LLDEQLLTFDLERLAEALMPERDLQFNYLGLQTLYDRYLQHWDGTRFELPQAFFMRVAMG 307
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L+L E RE+ AI+FY LLSSF+FM STPTLFNSGT R QLSSCYL++VPDDL GI+ +I
Sbjct: 308 LTLQEVEREERAIEFYRLLSSFDFMSSTPTLFNSGTRRPQLSSCYLTSVPDDLGGIYGAI 367
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
++NALLSK+AGGLGNDWT+VR++G+ IKGTNGRSQGV+PFLKV +D AVAVNQGGKRKGA
Sbjct: 368 RDNALLSKFAGGLGNDWTRVRAMGAHIKGTNGRSQGVVPFLKVASDTAVAVNQGGKRKGA 427
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
+CAYLETWH+D+EEF+ELRKNTGDDRRRTHDMN A WVPDLFM+R + WTLFSP D
Sbjct: 428 VCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTAHWVPDLFMQRAEADADWTLFSPDDA 487
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
LH +G+ F+ +Y E + G+I+ +K +SA LWR++L MLFETGHPWITFKD C
Sbjct: 488 AHLHELYGQAFKAAYEDLEARAARGEIRNYKVVSAKQLWRRMLGMLFETGHPWITFKDPC 547
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N+RSPQQH G++HSSNLCTEITLNTS EI VCNLGS+NL H LD +L+ T+R
Sbjct: 548 NLRSPQQHAGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLAAHTTPDGLDHERLRNTVRT 607
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
AMRMLDNVIDINYY+V +A+ +NLRHRPVGLG+MGFQD L+ +PY+S EA+ FAD+S
Sbjct: 608 AMRMLDNVIDINYYSVPQARRANLRHRPVGLGVMGFQDALYAQDLPYASDEAVAFADRSQ 667
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I YYA AS +LA E+G Y S++GSLW +G LP DS++ + + R ++ S SL+
Sbjct: 668 EAISYYAIEASADLARERGAYPSFEGSLWQRGELPLDSIQRVVEARDGD-CTMDTSSSLD 726
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR +++ GMRNSNC+AIAPTATI+NI+GVS IEP ++NL++KSNLSGEFT +N
Sbjct: 727 WAALREKVRT-GMRNSNCLAIAPTATIANIVGVSQGIEPAFKNLYVKSNLSGEFTVVNPA 785
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV+ LK GLWD M+ +LKY+DG++ I R+P++L++ +ATAFE+ W+++AGS RQK
Sbjct: 786 LVRALKAYGLWDAVMVNDLKYYDGSVQPIGRVPEELKQRFATAFELDSEWLVQAGSRRQK 845
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
W+DQSQSLN+Y++ SG KLD Y+ AW GLKTTYYLRS A +KS +
Sbjct: 846 WLDQSQSLNLYMAEPSGPKLDALYRQAWRLGLKTTYYLRSTGATQVEKS---------TM 896
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
D N + C + D ECE+CQ
Sbjct: 897 DPARANRLNAVSAAPGGGQSCSV-----DDPECEACQ 928
>gi|126664353|ref|ZP_01735337.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
gi|126630679|gb|EBA01293.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
Length = 929
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/702 (61%), Positives = 545/702 (77%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG--KEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKL 58
+E++P YS VTARLL+ ++ E K + + Y + S FIN GI +LL+ +
Sbjct: 204 IEREPDYSAVTARLLLEQLRLESVTALKLDTSLSLADVYPQALSTFINAGIRYELLDEAM 263
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
A F++ L AL PERDLQF +LGL+ LYDRYFLH + R+E+PQ FFMR+AMGLSL E
Sbjct: 264 AAFDMERLGAALKPERDLQFGFLGLQTLYDRYFLHWKEDRLELPQVFFMRVAMGLSLRED 323
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FY+LLSSF++M STPTLFNSGT SQLSSCYL+TV DDL I+ SI++NA+L
Sbjct: 324 DPNSRAIEFYDLLSSFDYMSSTPTLFNSGTRHSQLSSCYLTTVDDDLEAIYGSIRDNAML 383
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR++G+ IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE
Sbjct: 384 SKWAGGLGNDWTPVRAMGARIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLE 443
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
+WH+DIEEF+ELRKNTGD+RRRTHDMN A WVPDL ++R+ + WTLFSP D PDLH+
Sbjct: 444 SWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRQDRDWTLFSPNDAPDLHDL 503
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G F E Y YE GKI+LFK I A LWRK+L++LFETGHPWITFKD CN+RSPQ
Sbjct: 504 YGNAFRERYQHYEALAAEGKIELFKTIPAKQLWRKMLTVLFETGHPWITFKDPCNLRSPQ 563
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ NG+LD +L++T+ A+RMLD
Sbjct: 564 QHKGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHINNGELDVKRLERTVDTAVRMLD 623
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDIN+YAV +A+ SNL+HRPVGLG+MGFQD L+ +++ Y+S +A++FAD +ME + Y+
Sbjct: 624 NVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYALRLSYTSPQAVEFADVAMEQLSYF 683
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS LA E+G Y SY+GSLW Q ILP DS++ L+ R L VN L+W +R+
Sbjct: 684 AIRASARLAAERGAYESYEGSLWSQKILPIDSIERLKAARLEGDLSVNTDSRLDWAPVRD 743
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
I K GMRNSN +AIAPTATISNI+GVS SIEP Y+NL +KSNLSGEFT +N LV++LK
Sbjct: 744 LIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSLVRDLK 803
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLWD M+ +LKY+DG++ QI RIP +L+ YATAFEI W++EA S RQKW+DQ Q
Sbjct: 804 AEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDARWLVEAASRRQKWLDQGQ 863
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKK 700
SLN+Y++ SGKKLDE Y+LAW RGLKTTYYLRS+ A A +
Sbjct: 864 SLNLYMAQPSGKKLDELYQLAWERGLKTTYYLRSLGATGANE 905
>gi|390562551|ref|ZP_10244747.1| Ribonucleoside-diphosphate reductase subunit alpha [Nitrolancetus
hollandicus Lb]
gi|390172867|emb|CCF84057.1| Ribonucleoside-diphosphate reductase subunit alpha [Nitrolancetus
hollandicus Lb]
Length = 956
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/756 (55%), Positives = 563/756 (74%), Gaps = 9/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP YS V AR L+ + EV G+ + I+ +Y FS FI + +D LL+P+L
Sbjct: 203 IEQDPAYSFVAARALLRSLYTEVLGRRVALIEANERYAGVFSAFIREAVDLDLLDPELKT 262
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ A+ P RD F YLGL+ LYDRY +H R+E+PQ F+MR+AMGL+L+E+NR
Sbjct: 263 FDLDRLATAIDPGRDHLFQYLGLQTLYDRYLIHYRQRRLELPQMFWMRVAMGLALHETNR 322
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYNL+S+F F STPTLFN+GT QLSSCYL+T+ DDL IF+S+++NALLSK
Sbjct: 323 EERAIEFYNLISTFRFCPSTPTLFNAGTRHPQLSSCYLTTIGDDLAQIFKSVRDNALLSK 382
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
++GG+GNDWT VR+LGS I GTNG+SQGVIPFLKV ND AVAVNQGGKRKGA+CAYLETW
Sbjct: 383 WSGGIGNDWTNVRALGSHINGTNGKSQGVIPFLKVANDAAVAVNQGGKRKGAVCAYLETW 442
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGD+RRRTHDMN A WVPDLFM RV + WTLFSP DVPDLH+ +G
Sbjct: 443 HLDIEEFLDLRKNTGDERRRTHDMNTAHWVPDLFMTRVQQDGQWTLFSPDDVPDLHDFYG 502
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+EFEE Y+ YE G + LFK++ A+ LWRK+L+ LFETGHPWITFKD NIRS Q H
Sbjct: 503 REFEERYVAYEALADQGALSLFKRVRAVDLWRKMLTALFETGHPWITFKDPSNIRSAQDH 562
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G++H+SNLCTEI LNTS++E+ VCNLGSINL H++NG+LD +L+ T+R A+RMLDNV
Sbjct: 563 AGVVHNSNLCTEILLNTSEDEVAVCNLGSINLVAHIENGQLDLNRLQSTVRTAVRMLDNV 622
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
ID+NYY + +A+ SNLRHRP+GLG MGFQD L+ + + ++S A++FAD+SME I Y+
Sbjct: 623 IDLNYYPIPEARASNLRHRPIGLGQMGFQDALYELGLSFASDGAVEFADRSMEAIAYFTI 682
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
ASTELA E+G Y SY GS WD+G+LP D+++LL +ERG + ++ + + +W +R +
Sbjct: 683 LASTELARERGTYPSYAGSKWDRGLLPIDTIQLLGEERGEP-VDIDTNSTFDWTAVREAV 741
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++ GMRNS+ +AIAPTATI+NI+GVS SIEP Y NL++KSNLSGEFT +N +LV++L +
Sbjct: 742 RQDGMRNSHTMAIAPTATIANILGVSQSIEPLYTNLYVKSNLSGEFTVVNHFLVRDLMAR 801
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +LKYFDG++ I R+P DL++ Y TAFE+ P+W+IE + RQKWID QSL
Sbjct: 802 GLWDHQMLDDLKYFDGSIQPIDRVPPDLKERYLTAFEVDPDWLIECAARRQKWIDMGQSL 861
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y++ +G+KL E Y AW +GLKTTYYLRS+ A +KS ++ + + +
Sbjct: 862 NLYVAEPNGRKLSEMYFRAWRKGLKTTYYLRSLGATRNEKSTIDINSRGIQPRWMKARSA 921
Query: 721 NKNLQEIKNNKKCLINSEINDVNE-------CESCQ 749
+ +LQ I+ ++ N CESC+
Sbjct: 922 SSDLQ-IERDEPAARQWTANGAGRICNLEPGCESCE 956
>gi|325001022|ref|ZP_08122134.1| ribonucleoside-diphosphate reductase alpha chain [Pseudonocardia
sp. P1]
Length = 927
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/720 (57%), Positives = 544/720 (75%), Gaps = 13/720 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V +RLLM ++ E + Q + Y Y ++ I L+
Sbjct: 195 VEREPDYSLVASRLLMDRLRAEAVSHLSGTRETPDQATMARDYASYTKDYLRHAIAIGLV 254
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +LA F+L ++ AL PERDLQ +LGL+ LYDRYFLH G R E+PQ FF+R+AMGL+
Sbjct: 255 DAELATFDLDRVTAALHPERDLQIGFLGLQTLYDRYFLHEHGTRFELPQAFFLRVAMGLA 314
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE AI+FY LLSSF+FM STPTLFNSGT R QLSSC+L+TV DDL IF +
Sbjct: 315 VREVDREARAIEFYELLSSFDFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIFGGYRN 374
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ I+GTNG SQGV+PFLK+ D AVAVNQGGKRKGA C
Sbjct: 375 NALLAKYSGGLGNDWTPVRGLGAHIRGTNGVSQGVVPFLKIAGDTAVAVNQGGKRKGAAC 434
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV +TWTLFSP +VPD
Sbjct: 435 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADTTWTLFSPDEVPD 494
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G EF E Y YE + G++++ + + A+ LWR++L+MLFETGHPW+TFKD CN+
Sbjct: 495 LHDLYGLEFAERYRAYEAAAERGELRVHRTVRAVDLWRRMLTMLFETGHPWVTFKDPCNL 554
Query: 355 RSPQQHVGIIHSSNLCTEITLNT------SKNEIGVCNLGSINLTLHMKNGKLDPIKLKK 408
RSPQQH G++HSSNLCTEITLNT + E+ VCNLGS+NL H+ LD KL++
Sbjct: 555 RSPQQHAGVVHSSNLCTEITLNTRAGHDDDRGEVAVCNLGSVNLAAHVTRDGLDADKLRR 614
Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
T+ A+RMLDNV+DIN+Y + +A+ SNLRHRPVGLG+MGF D L + +I S+ A+ FA
Sbjct: 615 TVTTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGMMGFSDALFLQRIAPGSEAAVGFA 674
Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528
D S E++ Y+A AS++LA E+GRY+S++GSLW +G+LP DSL LL RG L+++ S
Sbjct: 675 DVSAEVLSYHAIAASSDLAAERGRYASFEGSLWSRGVLPIDSLDLLADARGEGELEIDRS 734
Query: 529 ESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTE 588
+L+W LR ++ GMRNSN +AIAPTATISNI GV SIEP + NL++KSN+SG+FT
Sbjct: 735 STLDWASLRETVRTQGMRNSNVLAIAPTATISNICGVGQSIEPIHLNLYVKSNMSGDFTV 794
Query: 589 INRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648
+N +LV++LK++GLWDE M+++LKYFDG+L++I R+P DL+++YATAFEI P W++EA S
Sbjct: 795 VNPHLVRDLKERGLWDEVMVSDLKYFDGSLAEIDRVPGDLKELYATAFEIEPRWLVEAAS 854
Query: 649 VRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
RQKW+DQ+QSLN+Y++ SG+KLDE Y+LAW GLKTTYYLR+ +A +KS + G D
Sbjct: 855 RRQKWLDQAQSLNLYLAGPSGRKLDELYRLAWRSGLKTTYYLRTRAATSVEKSTLK-GTD 913
>gi|189219088|ref|YP_001939729.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
ATP-cone domains [Methylacidiphilum infernorum V4]
gi|189185946|gb|ACD83131.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
ATP-cone domains [Methylacidiphilum infernorum V4]
Length = 942
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/754 (58%), Positives = 575/754 (76%), Gaps = 12/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V ARL++ I +E + +K YF +I+ G+ L+P+L E
Sbjct: 196 VEKEPAYTYVAARLMLGKIYEEALSLVPSIHETAEYHKAYFPSYIDFGVKIGRLSPRLLE 255
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE-SN 119
FNL L+ AL ERD QF+YLGL+ILYDRY LH E RIE PQ+F+MR+AMGL+LNE +
Sbjct: 256 FNLEKLAQALRLERDRQFSYLGLQILYDRYLLHHEERRIETPQYFWMRVAMGLALNEKED 315
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
RE AI+FY+ LS F FM STPTLFNS TI QLSSCYL TV DDL GIF+ I +NA LS
Sbjct: 316 RELWAIRFYDTLSRFLFMASTPTLFNSATIHPQLSSCYLLTVEDDLDGIFKVISDNARLS 375
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGGLGNDWT VR+ GS I+GTNG+SQGVIPFLKV ND AVAVNQGGKRKGA+CAYLET
Sbjct: 376 KWAGGLGNDWTNVRATGSLIRGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGALCAYLET 435
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DIE+F+ELRKNTGD+RRRTHDMN A W+PDLFMKRV++ +WTLFSP DVPDLH+ +
Sbjct: 436 WHLDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLQNGSWTLFSPSDVPDLHHLY 495
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
GK+FE+ Y+ YE G+IKLFK++SA+ LWRK+L++LFETGHPWITFKD NIRSPQ
Sbjct: 496 GKDFEKRYVEYEQMADRGEIKLFKRVSAVDLWRKMLTLLFETGHPWITFKDPSNIRSPQD 555
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIAMRMLD 418
HVG+I+SSNLCTEI LNTS E+ VCNLGSINL H+ ++G++D KL++TIRIA+RMLD
Sbjct: 556 HVGVINSSNLCTEILLNTSPEEVAVCNLGSINLAAHLDESGEIDEKKLQETIRIAVRMLD 615
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDIN+Y + +A+ +NLRHRPVGLGIMGFQD L+I KIPY S++A++ AD+ MEM+ Y+
Sbjct: 616 NVIDINFYPIPEARNANLRHRPVGLGIMGFQDVLYIKKIPYGSEKAVEVADRLMEMVSYH 675
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A +S ELA+E+G YS++ GS WD+G+LP D++ LLE++R +++V+ S++ +W +R
Sbjct: 676 AILSSCELAKERGSYSTFKGSKWDRGLLPIDTIDLLEEQR-EGFVEVDRSQTKDWDYVRK 734
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+IK+ G+RNS +AIAPTATISNI GV SIEP+Y+NL++KSNLSG+F IN YLV +LK
Sbjct: 735 KIKEQGLRNSCLLAIAPTATISNITGVCQSIEPSYKNLYVKSNLSGDFISINPYLVADLK 794
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
K LWD+ MI +LKY+DG++ I RIP +L+++YATAFEI P +IIE S RQKWID Q
Sbjct: 795 KLNLWDQEMIDDLKYYDGSVKPIERIPQELKELYATAFEIDPYFIIECASRRQKWIDMGQ 854
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
SLN+Y+ SG K+ + Y L W +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 855 SLNLYVDEPSGWKISQMYILCWKKGLKTTYYLRSRAATTVEKSTLDVNARGIQPRWMKSK 914
Query: 719 GYNKNLQEIKNNKK---CLINSEINDVNECESCQ 749
+ N++ +N K+ C ++ ECESCQ
Sbjct: 915 SPSANIRVERNEKEKNACSLDP------ECESCQ 942
>gi|383827738|ref|ZP_09982827.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Saccharomonospora
xinjiangensis XJ-54]
gi|383460391|gb|EID52481.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Saccharomonospora
xinjiangensis XJ-54]
Length = 822
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/757 (57%), Positives = 556/757 (73%), Gaps = 15/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEV---FGKEIKQIDIP---IKYKEYFSKFINKGIDNKLL 54
+E++P YS ARLL+ + E E +Q D P Y +YF ++ +GID LL
Sbjct: 73 VEREPNYSFAAARLLLDSARAEAVSYLAGEPRQPDYPEMAATYADYFRDYLRRGIDLHLL 132
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMG 112
LA F+L ++++AL PERDL LGL+ LYDRY L G R E+PQ FFMR+AMG
Sbjct: 133 ADDLATFDLDVITSALRPERDLDLGLLGLQTLYDRYVLRDPHSGTRFELPQAFFMRVAMG 192
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L++ E NRE A++FY LLSS FM STPTLFNSGT R QLSSC+L+TV DDL IF S
Sbjct: 193 LAVAERNREARAVEFYELLSSLRFMTSTPTLFNSGTRRPQLSSCFLTTVSDDLSSIFTSY 252
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ NA+L+KY+GGLGNDWT VR LG+ I+GT G+SQGV+PFLK+ ND AVAVNQGGKRKGA
Sbjct: 253 RNNAMLAKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTAVAVNQGGKRKGA 312
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH+D+EEF++LRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP +V
Sbjct: 313 ACAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAEWTLFSPDEV 372
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+ +G F E Y YE G+I++F+++SA LWR++L+MLFETGHPWITFKD C
Sbjct: 373 PDLHDLYGTAFAERYRAYEEAADAGQIRVFRRVSAKQLWRRMLTMLFETGHPWITFKDPC 432
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N+RSPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ LD L+ T+
Sbjct: 433 NLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLARHVGENGLDVEALRDTVTT 492
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVIDIN+Y V +A+ SNLRHRPVGLG+MGF D L + IP +S A++FAD+SM
Sbjct: 493 AVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFADALFELGIPQASDAAVEFADRSM 552
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E++ Y+A AS +LAEE+G Y S+ GSLW QG+LP DSL+LL + RG L ++ + +L+
Sbjct: 553 EVLSYHAIAASADLAEERGTYPSFAGSLWSQGVLPIDSLRLLAQARGEGELDIDTTTTLD 612
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR R++ GMRNSN +AIAPTATISNI GV SIEP + NL +KSN+SGEFT +N +
Sbjct: 613 WDSLRERVRAGGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPH 672
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV++LK++GLWD++M+A LK+ DG L+ I R+PDDL+ +YATAFEI W+I+A S RQK
Sbjct: 673 LVRDLKQRGLWDDAMVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLIDAASRRQK 732
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
WIDQ+QSLN+Y++ SGK LD Y+ AW RGLKTTYYLRS +A +KS G D L
Sbjct: 733 WIDQAQSLNLYLAEPSGKALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLR-GTDG-RL 790
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + ++ + C I+D++ CE+CQ
Sbjct: 791 NAVTPAVPSVPVEALDVAAAC----RIDDLD-CEACQ 822
>gi|403739758|ref|ZP_10952094.1| ribonucleoside-diphosphate reductase alpha subunit [Austwickia
chelonae NBRC 105200]
gi|403190501|dbj|GAB78864.1| ribonucleoside-diphosphate reductase alpha subunit [Austwickia
chelonae NBRC 105200]
Length = 847
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/709 (57%), Positives = 536/709 (75%), Gaps = 6/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YSQV ARLL+ ++ E +++ ++ +Y YF ++ + +D +
Sbjct: 90 VEREPRYSQVAARLLLDRMRTEALTHLAGTPRQLTAEEMNDEYARYFPTYLRRAVDIGRV 149
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+L ++L + AL DL F LGL+ +YDRY LH +G R E+PQ FFMR+AMGL+
Sbjct: 150 DPELLTYDLDRIGAALDGTADLDFGLLGLQTVYDRYVLHEDGTRFELPQAFFMRVAMGLA 209
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
L E +RE AI+FY +LS F+ M STPTLFN+GT R QLSSC+L+TV DDL IF S +
Sbjct: 210 LREDDRETRAIEFYRMLSGFDLMTSTPTLFNAGTTRPQLSSCFLTTVDDDLDRIFSSYRN 269
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALL+KY+GGLGNDWT VR LG+ I GTNGRSQGV+PFLK+ ND VAVNQGGKRKGA C
Sbjct: 270 NALLAKYSGGLGNDWTPVRGLGAHIHGTNGRSQGVVPFLKIANDTTVAVNQGGKRKGAAC 329
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A W+PD FM+R+ S+WTLFSP + PD
Sbjct: 330 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDEFMRRLESDSSWTLFSPDETPD 389
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ +G++F Y YE G+I+L ++I A LWR++L+MLFETGHPWITFKD CN+
Sbjct: 390 LHDLYGEDFSRRYAEYEAAADRGEIRLHRRIPAKDLWRRMLTMLFETGHPWITFKDPCNL 449
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQH G++HSSNLCTEITLNT+ +E+ VCNL S+NL H+ LD KL++T+R A+
Sbjct: 450 RSPQQHAGVVHSSNLCTEITLNTTSDEVAVCNLASVNLARHVTPSGLDVDKLRRTVRTAV 509
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDIN+Y + + + SNLRHRPVGLG+MG QD L + IPY+S +A+ FAD+S E
Sbjct: 510 RMLDNVIDINHYTIPETRRSNLRHRPVGLGLMGHQDALFTLGIPYASDDAVDFADRSTET 569
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y+A AS +LA ++G Y SY+GSLW +GILP DSL+LL + R L ++ S +L+W
Sbjct: 570 LSYFAIEASADLAADRGTYQSYEGSLWSRGILPIDSLRLLAQARHDGELDIDTSSTLDWD 629
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+LR+ ++ GMRNSN +AIAPTATISNI GV+ASIEP ++NL +K+N+SG+FT +N +LV
Sbjct: 630 RLRDHVQANGMRNSNVMAIAPTATISNICGVAASIEPQFQNLFVKANMSGDFTVVNGHLV 689
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LKK GLWDE MIA+LKY DG L++I RIP+DLR+IYATAF+I P W+I A S RQKWI
Sbjct: 690 ADLKKYGLWDEEMIADLKYHDGALARIDRIPEDLRRIYATAFDIDPRWLIAAASRRQKWI 749
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
DQ+QSLN+Y++ SG+ LDE Y+ AW GLKTTYYLR+ +A +KS
Sbjct: 750 DQAQSLNLYVAEPSGRALDELYRSAWRSGLKTTYYLRARAATQVEKSTL 798
>gi|87311396|ref|ZP_01093516.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
marina DSM 3645]
gi|87285808|gb|EAQ77722.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
marina DSM 3645]
Length = 973
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/756 (56%), Positives = 565/756 (74%), Gaps = 8/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y +V ARL++ I E G+ + DI + FS +I+ GI+ L +L +
Sbjct: 219 IERDPDYDKVAARLMLMVIYNEAIGRLHPKEDIAEVTRREFSTYISTGIEAGRLAERLRD 278
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L +S AL PERD F YLGL+ +YDRY LHI+G RIE PQ+F+MR+AMGL+ NE N+
Sbjct: 279 FDLEKISAALRPERDAAFPYLGLQTIYDRYLLHIDGRRIETPQYFWMRVAMGLAWNEENK 338
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FYN+LS+F F +TPTLFNSGT+ QLSSCYLSTV DDL IF+ + +NA+LSK
Sbjct: 339 EERAIEFYNILSTFRFTSATPTLFNSGTLHPQLSSCYLSTVDDDLEHIFKVVSDNAMLSK 398
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT +R+ + IKGTNG+SQGVIPFLKVVND A+AVNQGGKRKGA+C+YLE+W
Sbjct: 399 WAGGLGNDWTNIRATNAHIKGTNGQSQGVIPFLKVVNDTAIAVNQGGKRKGAVCSYLESW 458
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+EEF++LRKNTGDDRRRTHDM+ A W+PDLFMKRV + + WTLFSP + PDLH+ G
Sbjct: 459 HLDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVRENADWTLFSPDETPDLHDLCG 518
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+F+ Y YE GK++LF+++ A LWRK+L+ LFETGHPWIT+KD N+RSPQ H
Sbjct: 519 SKFQARYEEYEKLADEGKMRLFRRLPANELWRKMLTRLFETGHPWITWKDPSNVRSPQDH 578
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEI LNTSK+EI VCNLGSINL H++NG+LD KL++T+ A RMLDNV
Sbjct: 579 VGVVHSSNLCTEILLNTSKDEIAVCNLGSINLVAHIRNGELDLEKLQETVTTAARMLDNV 638
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY +AK SN RHRPVG+G+MGFQD L + + Y+S+EA++FAD+SME I Y+A
Sbjct: 639 IDINYYPTGEAKTSNARHRPVGMGLMGFQDALSSLGVSYASQEAVEFADRSMEAISYFAI 698
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS++LA E+G Y +Y GS WD+GILP DSL +LE+ERG ++V+ S +L+W+ +R+ +
Sbjct: 699 LASSQLAAERGTYETYAGSKWDRGILPIDSLDILEQERGLP-IEVDRSSTLDWQVVRDSV 757
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++ GMRNSN +AIAPTATIS I+GVS SIEPTY+NL +KSNLSGEF ++N +V++LK +
Sbjct: 758 REHGMRNSNVMAIAPTATISTIVGVSQSIEPTYKNLFVKSNLSGEFPQLNIRMVQDLKAE 817
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ +KY+DG L++I R+PD L+ Y TAFE+ W+IE G+ RQKWID QSL
Sbjct: 818 GLWDSDMVEAIKYYDGELTEIDRVPDHLKLRYLTAFEVDSKWLIECGARRQKWIDMGQSL 877
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM---GIDSVNLDEIS- 716
N+Y++ SG+KL + Y LAW GLKTTYYLR++SA +KS ++ GI + S
Sbjct: 878 NLYMAQPSGRKLHDMYMLAWNVGLKTTYYLRTLSATQVEKSTIDVNRFGIQPRWMKNASA 937
Query: 717 ---IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
I+ + EI + N +CESCQ
Sbjct: 938 SADIRVDRGDAAEILDELPPEQPKACNLDGDCESCQ 973
>gi|149173740|ref|ZP_01852369.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
maris DSM 8797]
gi|148847270|gb|EDL61604.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
maris DSM 8797]
Length = 949
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/756 (57%), Positives = 562/756 (74%), Gaps = 11/756 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQI-DIPIKYKEYFSKFINKGIDNKLLNPKLA 59
+E+DP Y V +RL++ I + G + ++ Y + F KF+ GI K L P L
Sbjct: 198 IERDPAYDTVASRLMLKIIYNDALGNAPSDVNELNQLYVDRFPKFLEDGIAAKRLTPDLH 257
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE-S 118
+F+L+ ++ AL P+RD F YLGL+ ++DRY LHI G RIE PQ+F+MR++MGL++ E
Sbjct: 258 KFDLNRIALALEPKRDHLFQYLGLQAIFDRYLLHIGGRRIETPQYFWMRVSMGLAIQEEG 317
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FYN+LSSF F +TPTLFNS T+ QLSSCYLSTV DDL IF+ + +NA L
Sbjct: 318 DATGRAIEFYNILSSFRFTSATPTLFNSATLHPQLSSCYLSTVNDDLDHIFKCVADNAKL 377
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWTQ+R+ S I GTNG+SQGVIPFLKVVND AVAVNQGGKRKGA+C+YLE
Sbjct: 378 SKWAGGLGNDWTQIRATNSHISGTNGQSQGVIPFLKVVNDTAVAVNQGGKRKGAVCSYLE 437
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWHMD+EEF++LRKNTGDDRRRTHDM+ A W+PDLFM+RV + + WTLFSP DVPDLH+
Sbjct: 438 TWHMDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMRRVREDAEWTLFSPNDVPDLHDL 497
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G +FE+ Y YE T+ G+IKLF++ISA+ LWRK+L+ LFETGHPWIT+KDA N+RSPQ
Sbjct: 498 YGHDFEKRYAEYERMTETGEIKLFRRISAVELWRKMLTRLFETGHPWITWKDASNLRSPQ 557
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
HVG++HSSNLCTEI LNTS++E VCNLGS+NL LH+ +G+LD L++T+R AMRMLD
Sbjct: 558 DHVGVVHSSNLCTEILLNTSRDETAVCNLGSVNLKLHIVDGQLDLGMLEETVRTAMRMLD 617
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NVIDINYY +A+ SN +HRPVGLGIMGFQD L I Y+S +A++FAD SME I Y+
Sbjct: 618 NVIDINYYPTPEARNSNTKHRPVGLGIMGFQDALLAQGISYASMQAVEFADASMEAISYF 677
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS+ELA E+GRY SY GS WD+G+LP D+L L EKERG ++V+ L+W+ +RN
Sbjct: 678 AILASSELAGERGRYGSYTGSKWDRGLLPIDTLDLYEKERGIP-VEVDRQARLDWQVVRN 736
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
I GMRNSN +AIAPTATIS IIGVS SIEP+Y++L++KSNLSGEFT++NR LV +LK
Sbjct: 737 SIAANGMRNSNVMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEFTQVNRQLVDDLK 796
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
LWD M+ +LKY+DG++ +I RIPD+L+ Y TAFE+ P W IE + RQKWID Q
Sbjct: 797 AVDLWDADMLESLKYYDGSVQEIERIPDELKARYLTAFEVEPKWTIECAAHRQKWIDMGQ 856
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM---GIDSVNLDEI 715
SLN+Y++ SGKKL E Y LAW RGLKTTYYLR+++A +KS ++ GI +
Sbjct: 857 SLNLYLAEPSGKKLHEMYMLAWERGLKTTYYLRTLAATQVEKSTVDVNKFGIQPRWMKNA 916
Query: 716 SIKGYNKNLQEIKNNKKCLIN--SEINDVNECESCQ 749
S G ++Q + ++ N +CE+CQ
Sbjct: 917 SASG---DIQVDREPAATMVTPGESCNLDGDCEACQ 949
>gi|381161286|ref|ZP_09870516.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharomonospora azurea NA-128]
gi|379253191|gb|EHY87117.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharomonospora azurea NA-128]
Length = 821
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/757 (56%), Positives = 557/757 (73%), Gaps = 16/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG---KEIKQIDIP---IKYKEYFSKFINKGIDNKLL 54
+E++P YS V ARLL+ ++ E G E + D P +Y +YF ++ +G++ LL
Sbjct: 73 VEREPNYSFVAARLLLDSLRAEAVGYLAGEPRHPDHPELAARYGDYFRDYLRRGVELHLL 132
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMG 112
+LAEF+L +++ AL PERDL LGL+ LYDRY L GIR E+PQ FFMR+AMG
Sbjct: 133 TEELAEFDLDVITAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMG 192
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L++ E +RE A++FY LLSS FM STPTLFN+GT R QLSSC+L+TV DDL IF
Sbjct: 193 LAVAEPDREARAVEFYELLSSLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLASIFSGY 252
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ NALL+KY+GGLGNDWT VR LG+ I+GT G+SQGV+PFLK+ ND VAVNQGGKRKGA
Sbjct: 253 RNNALLAKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGA 312
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV WTLFSP +V
Sbjct: 313 ACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEDWTLFSPDEV 372
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+ +G F E Y YE G+I++F+++SA LWR++L+MLFETGHPWITFKD C
Sbjct: 373 PDLHDLYGTAFAERYRAYEKAADAGEIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPC 432
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N+RSPQQH G++HSSNLCTEITLNTS +E+ VCNLGS+NL H+ LD L++T+
Sbjct: 433 NLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSVNLARHVGANGLDVEALRRTVTT 492
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVIDIN+Y V +A+ SNLRHRPVGLG+MGF D L + IP +S EA++FAD+SM
Sbjct: 493 AVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFSDALFELGIPQASDEAVEFADRSM 552
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E++ Y+A AS ELA E+G YSS+ GSLW +G+LP DSL+LL + RG L ++ S +L+
Sbjct: 553 EVLSYHAISASAELAAERGAYSSFAGSLWSRGVLPIDSLRLLAEARGEGELDIDTSTTLD 612
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR R++ GMRNSN +AIAPTATISNI GV SIEP + NL +KSN+SGEFT +N
Sbjct: 613 WDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPQ 672
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV++LK++GLWD+ ++A LK+ DG L+ I R+PDDL+ +YATAFEI W+++A + RQK
Sbjct: 673 LVRDLKRRGLWDDDLVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLVDAAARRQK 732
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
WIDQ+QSLN+Y++ SG+ LD Y+ AW RGLKTTYYLRS +A +KS G D L
Sbjct: 733 WIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLR-GTDG-RL 790
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ ++ ++ + C I D ECE+CQ
Sbjct: 791 NAVTPTVPAVAVESVE-SAACRI-----DDPECEACQ 821
>gi|418463214|ref|ZP_13034235.1| ribonucleotide-diphosphate reductase subunit alpha
[Saccharomonospora azurea SZMC 14600]
gi|359734102|gb|EHK83084.1| ribonucleotide-diphosphate reductase subunit alpha
[Saccharomonospora azurea SZMC 14600]
Length = 802
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/757 (56%), Positives = 557/757 (73%), Gaps = 16/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG---KEIKQIDIP---IKYKEYFSKFINKGIDNKLL 54
+E++P YS V ARLL+ ++ E G E + D P +Y +YF ++ +G++ LL
Sbjct: 54 VEREPNYSFVAARLLLDSLRAEAVGYLAGEPRHPDHPELAARYGDYFRDYLRRGVELHLL 113
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMG 112
+LAEF+L +++ AL PERDL LGL+ LYDRY L GIR E+PQ FFMR+AMG
Sbjct: 114 TEELAEFDLDVITAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMG 173
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L++ E +RE A++FY LLSS FM STPTLFN+GT R QLSSC+L+TV DDL IF
Sbjct: 174 LAVAEPDREARAVEFYELLSSLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLASIFSGY 233
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ NALL+KY+GGLGNDWT VR LG+ I+GT G+SQGV+PFLK+ ND VAVNQGGKRKGA
Sbjct: 234 RNNALLAKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGA 293
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV WTLFSP +V
Sbjct: 294 ACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEDWTLFSPDEV 353
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+ +G F E Y YE G+I++F+++SA LWR++L+MLFETGHPWITFKD C
Sbjct: 354 PDLHDLYGTAFAERYRAYEKAADAGEIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPC 413
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N+RSPQQH G++HSSNLCTEITLNTS +E+ VCNLGS+NL H+ LD L++T+
Sbjct: 414 NLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSVNLARHVGANGLDVEALRRTVTT 473
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVIDIN+Y V +A+ SNLRHRPVGLG+MGF D L + IP +S EA++FAD+SM
Sbjct: 474 AVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFSDALFELGIPQASDEAVEFADRSM 533
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E++ Y+A AS ELA E+G YSS+ GSLW +G+LP DSL+LL + RG L ++ S +L+
Sbjct: 534 EVLSYHAISASAELAAERGAYSSFAGSLWSRGVLPIDSLRLLAEARGEGELDIDTSTTLD 593
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR R++ GMRNSN +AIAPTATISNI GV SIEP + NL +KSN+SGEFT +N
Sbjct: 594 WDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPQ 653
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV++LK++GLWD+ ++A LK+ DG L+ I R+PDDL+ +YATAFEI W+++A + RQK
Sbjct: 654 LVRDLKRRGLWDDDLVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLVDAAARRQK 713
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
WIDQ+QSLN+Y++ SG+ LD Y+ AW RGLKTTYYLRS +A +KS G D L
Sbjct: 714 WIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLR-GTDG-RL 771
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ ++ + ++ C I D ECE+CQ
Sbjct: 772 NAVTPTVPAVAVESV-DSAACRI-----DDPECEACQ 802
>gi|345302305|ref|YP_004824207.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodothermus
marinus SG0.5JP17-172]
gi|345111538|gb|AEN72370.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
marinus SG0.5JP17-172]
Length = 926
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/752 (57%), Positives = 570/752 (75%), Gaps = 9/752 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ V ARLL+ + +EVFG+ + + + F ++ GI L+ +L +
Sbjct: 181 IEREPDYTYVAARLLLDALYREVFGRPVPPAEQAATCRRGFRAYLEHGIRLGRLDERLLQ 240
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLH-IEGIRIEMPQFFFMRIAMGLSLNES 118
F+L L+ AL PERD QF +LGL+ LYDRY LH EG R E+PQ+ +MR+AMGL+L E
Sbjct: 241 TFDLDRLAAALRPERDRQFTFLGLQTLYDRYLLHEPEGRRFELPQYLWMRVAMGLALAED 300
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FY LLSSF FM STPTLFN+GT QLSSCYL+TV DDL IF++I++NALL
Sbjct: 301 DPTARAIQFYELLSSFRFMNSTPTLFNAGTPHPQLSSCYLTTVQDDLGAIFKAIRDNALL 360
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+LG+ I+GTNGRSQGVIPFLK+VND AVAVNQGGKRKGA+CAYLE
Sbjct: 361 SKWAGGLGNDWTPVRALGAHIRGTNGRSQGVIPFLKIVNDTAVAVNQGGKRKGAVCAYLE 420
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WH+DIEEF+ELR+NTGD+RRRTHDMN A W+PDLFM+RV ++ WTLFSP +VPDLH+
Sbjct: 421 VWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERRHWTLFSPDEVPDLHDL 480
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G+ F E Y YE + + G+I+ ++++ A+ LWRK+LSMLFETGHPW+TFKD CNIRSPQ
Sbjct: 481 YGRAFRERYEHYEREAEAGRIRNWRRVEAVDLWRKMLSMLFETGHPWLTFKDPCNIRSPQ 540
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIAMRML 417
HVGI+HSSNLCTEITLNTS E+ VCNLGSINL H+ + G+LD +L+ TIR A+RML
Sbjct: 541 DHVGIVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGELDRDRLRDTIRTAVRML 600
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNVID+N+Y + +A+ SNLRHRP+GLG+MGFQD L+ + Y+S+ A++ AD+ ME I Y
Sbjct: 601 DNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVEMADELMEFIAY 660
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
AY AS++LA E+G Y ++ GS WD+G+LP D+L LLE ERG + V + L+W LR
Sbjct: 661 CAYEASSDLAVERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEP-VPVPRTARLDWDALR 719
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+I++ GMRN+N +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT++N YLV++L
Sbjct: 720 EKIRRQGMRNANVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFTQLNPYLVRDL 779
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
K +GLWDE M+ +LKY+DG++ +I RIP +L++ Y TAFEI P W+IE + RQKWIDQS
Sbjct: 780 KARGLWDEEMLDDLKYYDGSVQEIDRIPPELKERYRTAFEIEPRWLIECAARRQKWIDQS 839
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISI 717
QSLN+Y++ SG+KL E Y+LAW GLKTTYYLR+++A +KS ++ + +
Sbjct: 840 QSLNLYLAEPSGRKLSEMYQLAWRLGLKTTYYLRALAATQIEKSTLDINRRGIQPRWMKS 899
Query: 718 KGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + ++ ++ C + E CE+CQ
Sbjct: 900 RSPSSDIVVRRDGPACSPDDE-----SCEACQ 926
>gi|375100292|ref|ZP_09746555.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharomonospora cyanea NA-134]
gi|374661024|gb|EHR60902.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharomonospora cyanea NA-134]
Length = 821
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/757 (56%), Positives = 551/757 (72%), Gaps = 16/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG---KEIKQIDIP---IKYKEYFSKFINKGIDNKLL 54
+E++P YS V ARLL+ ++ E G E + D P Y +YF ++ +G++ LL
Sbjct: 73 VEREPDYSFVAARLLLDSLRGEAVGYLAGEPRHPDYPEMAATYGDYFRDYLRRGVELHLL 132
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMG 112
LA F+L +++ AL PERDL LGL+ LYDRY L G R E+PQ FFMR+AMG
Sbjct: 133 TEDLATFDLDVITAALRPERDLDLGLLGLQTLYDRYLLRDPHAGTRFELPQAFFMRVAMG 192
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L++ E +RE A++FY LLSS FM STPTLFNSGT R QLSSC+L+TV DDL IF
Sbjct: 193 LAVAEPDREARAVEFYELLSSLRFMTSTPTLFNSGTRRPQLSSCFLTTVSDDLASIFSGY 252
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ NA+L+KY+GGLGNDWT VR LG+ I+GT G+SQGV+PFLK+ ND VAVNQGGKRKGA
Sbjct: 253 RNNAMLAKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGA 312
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPD F++RV WTLFSP +V
Sbjct: 313 ACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVETDEDWTLFSPDEV 372
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
DLH+ +G F E Y YE G+I++F+++SA LWR++L+MLFETGHPWITFKD C
Sbjct: 373 SDLHDLYGTAFAERYRAYEEAADAGEIRVFRRVSAKQLWRRMLTMLFETGHPWITFKDPC 432
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N+RSPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ LD L++T+
Sbjct: 433 NLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLARHVGEDGLDVEALRRTVTT 492
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVIDIN+Y V +A+ SNLRHRPVGLG+MGF D L + +P +S+ A++FAD+SM
Sbjct: 493 AVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFSDALFELGVPQASQAAVEFADRSM 552
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E++ Y+A AS +LAEE+G YSS+DGSLW +GILP DSL+LL + RG L ++ + +L+
Sbjct: 553 EVLSYHAISASADLAEERGAYSSFDGSLWSRGILPIDSLRLLAEARGEGELDIDTTTTLD 612
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W+ LR R++ GMRNSN +AIAPTATISNI GV SIEP + NL +KSN+SGEFT +N +
Sbjct: 613 WESLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPH 672
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV++LK++GLWD+ M+A LK+ DG L+ I RIPDDL+ +YATAFEI W+++A S RQK
Sbjct: 673 LVRDLKRRGLWDDDMVAELKFHDGVLAPIDRIPDDLKALYATAFEIDSRWLVDAASRRQK 732
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
WIDQ+QSLN+Y++ SG+ LD Y+ AW RGLKTTYYLRS +A +KS +N
Sbjct: 733 WIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLRGTDGRLNA 792
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ + E C I D +CE+CQ
Sbjct: 793 VTPTVPA---AVVEASATAACRI-----DDPDCEACQ 821
>gi|406834442|ref|ZP_11094036.1| ribonucleoside-diphosphate reductase subunit alpha [Schlesneria
paludicola DSM 18645]
Length = 940
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/751 (56%), Positives = 554/751 (73%), Gaps = 3/751 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP + V ARL++ I KEV G +P + + F ++ GI L+P+L
Sbjct: 191 IERDPAFDVVAARLMLNVIYKEVLGATPDARSLPKLHHDQFEHYVIDGIRAGRLSPELRR 250
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ A+ P+RD QF+YLGL+ +YDRY LH+ G RIE PQ+F+MR+AMG++L E +R
Sbjct: 251 FDLERLAKAMEPKRDAQFHYLGLQAIYDRYLLHVGGRRIETPQYFWMRVAMGVALQEESR 310
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E+ AI+FY +LSSF F +TPTLFNSGT QLSSCYLSTV DDL IF+ I +NA+LSK
Sbjct: 311 EERAIEFYEMLSSFRFTSATPTLFNSGTPHPQLSSCYLSTVSDDLGHIFKVIADNAVLSK 370
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT +R+ + I GTNGRSQGVIPFLKVVND AVAVNQGGKRKGA+C+YLETW
Sbjct: 371 WAGGLGNDWTNIRATNAHIHGTNGRSQGVIPFLKVVNDAAVAVNQGGKRKGAVCSYLETW 430
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DIEEF++LRKNTGDDRRRTHDM+ A W+PDLFMKRV + +WTLFSP +V DLH+ +G
Sbjct: 431 HLDIEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVRQNGSWTLFSPDEVSDLHDLYG 490
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
K FEE Y+ YE G++ LF+++SA LWRK+L+ LFETGHPWITFKD N+RSPQ H
Sbjct: 491 KAFEERYVEYERLADAGEMLLFRRVSAAELWRKMLTRLFETGHPWITFKDPSNLRSPQDH 550
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG++HSSNLCTEI LNTS +E VCNLGSINL H+ +G+LD +L+ T+++A+RMLDNV
Sbjct: 551 VGVVHSSNLCTEILLNTSADETAVCNLGSINLAAHVVDGQLDLERLRATVKVAVRMLDNV 610
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY +A SN RHRP+GLG+MGFQD L ++I ++S++A++FADQSME I + A
Sbjct: 611 IDINYYPTPEAANSNRRHRPIGLGLMGFQDALCKLRISFASEQAVEFADQSMEAISHAAI 670
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS LA E+G Y SY GS W +G+LP D+L LLE ERG + + V +L+W +R +
Sbjct: 671 LASATLAAERGAYGSYAGSKWQRGLLPIDTLDLLEAERGEQ-VPVQREGTLDWNVVRKAV 729
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ GMRNSN +AIAPTATIS IIGVS SIEP Y++L+ KSNLSGEFT++N LV ELK+
Sbjct: 730 AESGMRNSNVLAIAPTATISTIIGVSQSIEPAYKHLYAKSNLSGEFTQVNEILVAELKEL 789
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD M+ LKYFDG L I RIP +LR+ + TAFEI P W+IE + RQKWIDQ QSL
Sbjct: 790 GLWDAQMLDELKYFDGTLQNIGRIPLELRRRFLTAFEIEPKWLIECAARRQKWIDQGQSL 849
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y++ +G+K+ + Y +AW +GLKTTYYLRS++A +KS ++ V + +
Sbjct: 850 NLYMAEPNGRKMQDMYFMAWEKGLKTTYYLRSLAATQVEKSTLDVNRFGVQPKWMKNRSS 909
Query: 721 NKNLQ-EIKNNKKCLINSEIN-DVNECESCQ 749
+ +++ E + +++ D CESCQ
Sbjct: 910 SSDIEIERSDETSSAVSAACRLDDPTCESCQ 940
>gi|384565724|ref|ZP_10012828.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Saccharomonospora glauca K62]
gi|384521578|gb|EIE98773.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Saccharomonospora glauca K62]
Length = 816
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/757 (57%), Positives = 549/757 (72%), Gaps = 21/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF---GKEIKQIDIP---IKYKEYFSKFINKGIDNKLL 54
+E++P YS V ARLL+ ++ E E + D P Y +YF ++ +G++ LL
Sbjct: 73 VEREPNYSFVAARLLLDSLRGEALTYLAGEPRHPDYPEMAAAYGDYFRDYLRRGVELHLL 132
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMG 112
+LA F+L +++ AL PERDL LGL+ LYDRY L G R E+PQ FFMR+AMG
Sbjct: 133 TEELATFDLDVVTAALRPERDLDLGLLGLQTLYDRYLLRDPHSGTRFELPQAFFMRVAMG 192
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
LS+ E ++E A++FY LLSS FM STPTLFNSGT R QLSSC+L+TV DDL IF S
Sbjct: 193 LSIAEPDKEARAVEFYELLSSLRFMTSTPTLFNSGTRRPQLSSCFLTTVSDDLGSIFSSY 252
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ NALL+KY+GGLGNDWT VR LG+ I+GT G+SQGV+PFLK+ ND VAVNQGGKRKGA
Sbjct: 253 RNNALLAKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGA 312
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPD F++RV WTLFSP +V
Sbjct: 313 ACAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEEWTLFSPDEV 372
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+ +G F E Y YE G+I++F+++SA LWR++L+MLFETGHPWITFKD C
Sbjct: 373 PDLHDLYGTAFAERYREYEQAADAGEIRVFRRVSAKQLWRRMLTMLFETGHPWITFKDPC 432
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N+RSPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ LD L++T+
Sbjct: 433 NLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLARHVGKDGLDVEALRRTVTT 492
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVIDIN+Y V +AK SNLRHRPVGLGIMGF D L + IP +S+EA++FAD+SM
Sbjct: 493 AVRMLDNVIDINFYTVPEAKRSNLRHRPVGLGIMGFSDALFELGIPQASEEAVEFADRSM 552
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E++ Y+A AS ELAEE+G Y S++GSLW +GILP DSL+LL + RG L V+ + +L+
Sbjct: 553 EVLSYHAISASAELAEERGAYPSFEGSLWSRGILPIDSLRLLAEARGEDELDVDTTMTLD 612
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR R++ GMRNSN +AIAPTATISNI GV SIEP + NL +KSN+SGEFT +N +
Sbjct: 613 WDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPH 672
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV +LK++GLWD++M+ LK DG L+ I R+PDDL+ YATAFEI W+I+A S RQK
Sbjct: 673 LVADLKRRGLWDDAMVTELKLHDGVLAPIDRVPDDLKARYATAFEIDSRWLIDAASRRQK 732
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
WIDQ+QSLN+Y++ SGK LD Y+ AW RGLKTTYYLRS +A +KS +N
Sbjct: 733 WIDQAQSLNLYLAEPSGKALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLRGTDGRLNA 792
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ ++ C I D +CE+CQ
Sbjct: 793 VTPAVP--------VEPASACRI-----DDPDCEACQ 816
>gi|338174004|ref|YP_004650814.1| ribonucleoside-diphosphate reductase subunit alpha [Parachlamydia
acanthamoebae UV-7]
gi|336478362|emb|CCB84960.1| ribonucleoside-diphosphate reductase subunit alpha [Parachlamydia
acanthamoebae UV-7]
Length = 951
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/753 (57%), Positives = 560/753 (74%), Gaps = 10/753 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V ARLL+ I EVF +E ++ + +F ++I KG+ K L P+L
Sbjct: 205 IEKEPAYNYVAARLLLQDIYNEVFEQECHPSEVANLHVSHFEQYIRKGVMAKRLTPELFG 264
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE-SN 119
++L L+ L RD F Y+G++ LYDRY +H++ RIE PQ+F+MR+AMGL+LNE N
Sbjct: 265 YDLEKLAQNLDSSRDKLFTYIGVQTLYDRYLIHVKNDRIETPQYFWMRVAMGLALNEKEN 324
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
RE+ AI+FYN+LS F+F+ STPTLFNSG++ QLSSCYLSTV DDL IF+ I +NA LS
Sbjct: 325 REERAIEFYNVLSQFHFISSTPTLFNSGSLHPQLSSCYLSTVQDDLVNIFKVIADNASLS 384
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K++GG+GNDWT +R+ G+ I GTNG +QGV+PFLKV ND AVAVNQGGKRKGA+CAYLET
Sbjct: 385 KWSGGIGNDWTNIRATGATIHGTNGLTQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLET 444
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DIE+F+ELRKNTGD+RRRTHDMN A W+PDLFMKRV ++S WTLF+P D PDLH+ +
Sbjct: 445 WHLDIEDFVELRKNTGDERRRTHDMNTANWIPDLFMKRVREQSVWTLFNPSDTPDLHDLY 504
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE+ Y YE + GKIKLFK I A+ LWRK+++MLFETGHPW+TFKD NIRSPQ
Sbjct: 505 GIEFEKRYCEYERLAQEGKIKLFKVIPAMDLWRKMITMLFETGHPWMTFKDPSNIRSPQS 564
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++HSSNLCTEI LNTS+NE VCNLGSINL H+K LD L KTIR AMRMLDN
Sbjct: 565 HAGVVHSSNLCTEILLNTSENETAVCNLGSINLAAHIKGDFLDEQFLAKTIRTAMRMLDN 624
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDINYY K+A+ SNLRHRPVGLG+MGFQD L+ +I Y S+EA++FAD SMEMI Y+A
Sbjct: 625 VIDINYYPTKEARESNLRHRPVGLGLMGFQDALYHFRIAYDSQEAVEFADASMEMISYHA 684
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
ASTELA+E+G YSSY GS W QGILP DS+ LL+ ER YL ++ + +W +R
Sbjct: 685 ILASTELAKERGVYSSYRGSKWSQGILPIDSIALLDNERKG-YLHMDRTSKKDWSVVRKE 743
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I+K GMRN N +AIAPTATI++I G+S SIEPT+ L++KSNLSGEF +N +LVK+LK+
Sbjct: 744 IQKHGMRNCNTMAIAPTATIAHISGLSQSIEPTFSLLYVKSNLSGEFAVLNEWLVKDLKE 803
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
+ LW++ M+ LKY+DG++ +I + P+DL+ +Y TAFEI P W+IE S RQKWID QS
Sbjct: 804 RDLWNQDMLDELKYYDGSVQEIEQFPEDLKGLYKTAFEIEPKWLIECASRRQKWIDMGQS 863
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM---GIDSVNLDEIS 716
LN+Y++ G+KL + Y LAW +GLKTTYYLRS +A +KS ++ GI + S
Sbjct: 864 LNLYVNAPDGRKLSDMYLLAWEKGLKTTYYLRSKAATQVEKSTLDINKKGIQPRWMKSRS 923
Query: 717 IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G + ++ K C ++ +ECESCQ
Sbjct: 924 ASGSIRVERDSSIPKSCSLSG-----DECESCQ 951
>gi|282890381|ref|ZP_06298909.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499763|gb|EFB42054.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 921
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/753 (57%), Positives = 560/753 (74%), Gaps = 10/753 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V ARLL+ I EVF +E ++ + +F ++I KG+ K L P+L
Sbjct: 175 IEKEPAYNYVAARLLLQDIYNEVFEQECHPSEVANLHVSHFEQYIRKGVMAKRLTPELFG 234
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE-SN 119
++L L+ L RD F Y+G++ LYDRY +H++ RIE PQ+F+MR+AMGL+LNE N
Sbjct: 235 YDLEKLAQNLDSSRDKLFTYIGVQTLYDRYLIHVKNDRIETPQYFWMRVAMGLALNEKEN 294
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
RE+ AI+FYN+LS F+F+ STPTLFNSG++ QLSSCYLSTV DDL IF+ I +NA LS
Sbjct: 295 REERAIEFYNVLSQFHFISSTPTLFNSGSLHPQLSSCYLSTVQDDLVNIFKVIADNASLS 354
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K++GG+GNDWT +R+ G+ I GTNG +QGV+PFLKV ND AVAVNQGGKRKGA+CAYLET
Sbjct: 355 KWSGGIGNDWTNIRATGATIHGTNGLTQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLET 414
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DIE+F+ELRKNTGD+RRRTHDMN A W+PDLFMKRV ++S WTLF+P D PDLH+ +
Sbjct: 415 WHLDIEDFVELRKNTGDERRRTHDMNTANWIPDLFMKRVREQSVWTLFNPSDTPDLHDLY 474
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE+ Y YE + GKIKLFK I A+ LWRK+++MLFETGHPW+TFKD NIRSPQ
Sbjct: 475 GIEFEKRYCEYERLAQEGKIKLFKVIPAMDLWRKMITMLFETGHPWMTFKDPSNIRSPQS 534
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++HSSNLCTEI LNTS+NE VCNLGSINL H+K LD L KTIR AMRMLDN
Sbjct: 535 HAGVVHSSNLCTEILLNTSENETAVCNLGSINLAAHIKGDFLDEQFLAKTIRTAMRMLDN 594
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDINYY K+A+ SNLRHRPVGLG+MGFQD L+ +I Y S+EA++FAD SMEMI Y+A
Sbjct: 595 VIDINYYPTKEARESNLRHRPVGLGLMGFQDALYHFRIAYDSQEAVEFADASMEMISYHA 654
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
ASTELA+E+G YSSY GS W QGILP DS+ LL+ ER YL ++ + +W +R
Sbjct: 655 ILASTELAKERGVYSSYRGSKWSQGILPIDSIALLDNERKG-YLHMDRTSKKDWSVVRKE 713
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I+K GMRN N +AIAPTATI++I G+S SIEPT+ L++KSNLSGEF +N +LVK+LK+
Sbjct: 714 IQKHGMRNCNTMAIAPTATIAHISGLSQSIEPTFSLLYVKSNLSGEFAVLNEWLVKDLKE 773
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
+ LW++ M+ LKY+DG++ +I + P+DL+ +Y TAFEI P W+IE S RQKWID QS
Sbjct: 774 RDLWNQDMLDELKYYDGSVQEIEQFPEDLKGLYKTAFEIEPKWLIECASRRQKWIDMGQS 833
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM---GIDSVNLDEIS 716
LN+Y++ G+KL + Y LAW +GLKTTYYLRS +A +KS ++ GI + S
Sbjct: 834 LNLYVNAPDGRKLSDMYLLAWEKGLKTTYYLRSKAATQVEKSTLDINKKGIQPRWMKSRS 893
Query: 717 IKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G + ++ K C ++ +ECESCQ
Sbjct: 894 ASGSIRVERDSSIPKSCSLSG-----DECESCQ 921
>gi|268316002|ref|YP_003289721.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodothermus
marinus DSM 4252]
gi|262333536|gb|ACY47333.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
marinus DSM 4252]
Length = 926
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/752 (56%), Positives = 568/752 (75%), Gaps = 9/752 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ V ARLL+ + +EVFG+ I + + F ++ G+ L+ +L
Sbjct: 181 IEREPDYTYVAARLLLDALYREVFGRPIPPSEQAEACRAGFRAYLEHGVRLGRLDERLLR 240
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLH-IEGIRIEMPQFFFMRIAMGLSLNES 118
F++ L+ AL PERD +F +LGL+ LYDRY LH EG R E+PQ+ +MR+AMGL+L E
Sbjct: 241 TFDIDRLAAALHPERDRRFTFLGLQTLYDRYLLHEPEGRRFELPQYLWMRVAMGLALAED 300
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FY LLSSF FM STPTLFN+GT QLSSCYL+TV DDL IF++I++NALL
Sbjct: 301 DPTARAIQFYELLSSFRFMNSTPTLFNAGTPHPQLSSCYLTTVQDDLGAIFKAIRDNALL 360
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+LG+ I+GTNGRSQGVIPFLK+VND AVAVNQGGKRKGA+CAYLE
Sbjct: 361 SKWAGGLGNDWTPVRALGAHIRGTNGRSQGVIPFLKIVNDTAVAVNQGGKRKGAVCAYLE 420
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WH+DIEEF+ELR+NTGD+RRRTHDMN A W+PDLFM+RV ++ WTLFSP +VPDLH+
Sbjct: 421 VWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFSPDEVPDLHDL 480
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G+ F E Y YE + + G+I+ +++I A+ LWRK+LSMLFETGHPW+TFKD CNIRSPQ
Sbjct: 481 YGRAFRERYEHYEREAEAGRIRNWRRIEAVALWRKMLSMLFETGHPWLTFKDPCNIRSPQ 540
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIAMRML 417
HVG++HSSNLCTEITLNTS E+ VCNLGSINL H+ + G+LD KL+ TIR A+RML
Sbjct: 541 DHVGVVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGELDREKLRDTIRTAVRML 600
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNVID+N+Y + +A+ SNLRHRP+GLG+MGFQD L+ + Y+S+ A++ AD+ ME I Y
Sbjct: 601 DNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVELADEFMEFIAY 660
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
AY AS++LA E+G Y ++ GS WD+G+LP D+L LLE ERG + V + L+W LR
Sbjct: 661 CAYEASSDLAAERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEP-VPVPRTARLDWDALR 719
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+I++ GMRNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT++N YLV++L
Sbjct: 720 EKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFTQLNPYLVRDL 779
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
K +GLWD+ M+ +LKY+DG++ +I RIP +L+ Y TAFEI P W+IE + RQKWIDQS
Sbjct: 780 KARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLIECAARRQKWIDQS 839
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISI 717
QSLN+Y++ SG+KL E Y+LAW GLKTTYYLR+++A +KS ++ + +
Sbjct: 840 QSLNLYLAEPSGRKLSEMYQLAWQLGLKTTYYLRALAATQIEKSTLDINRRGIQPRWMKS 899
Query: 718 KGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + ++ ++ C + E CE+CQ
Sbjct: 900 RSPSSDIVVRRDGPACSPDDE-----SCEACQ 926
>gi|257055669|ref|YP_003133501.1| ribonucleotide-diphosphate reductase subunit alpha
[Saccharomonospora viridis DSM 43017]
gi|256585541|gb|ACU96674.1| ribonucleoside-diphosphate reductase, alpha subunit
[Saccharomonospora viridis DSM 43017]
Length = 815
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/757 (57%), Positives = 551/757 (72%), Gaps = 15/757 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEV---FGKEIKQID---IPIKYKEYFSKFINKGIDNKLL 54
+E++P YS V ARLL+ ++ E E +Q D + Y +YF ++ +GID +LL
Sbjct: 66 VEREPNYSFVAARLLLDLLRGEATSYLADEPRQPDYAEMAAGYADYFRDYLRRGIDLQLL 125
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMG 112
+ +LA F+L +L+ AL PERDL LGL+ LYDRY L GIR E+PQ FFMR+AMG
Sbjct: 126 DEELAAFDLDILAAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMG 185
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L++ E R+ A++FY LLS+ FM STPTLFN+GT R QLSSC+L+TV DDL IF
Sbjct: 186 LAIREPERDTRAVEFYELLSTLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLESIFTGY 245
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ NALL+KY+GGLGNDWT VR LG+ I+GT G+SQGV+PFLK+ ND VAVNQGGKRKGA
Sbjct: 246 RNNALLAKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGA 305
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH+DIEEF+ELRKNTGDDRRRTHDMN A WVPD F++RV + WTLFSP +V
Sbjct: 306 ACAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPDEV 365
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+ +G F E Y YE G+I++F+++SA LWR++L+MLFETGHPWITFKD C
Sbjct: 366 PDLHDLYGTAFAERYRAYEKAADAGQIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPC 425
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N+RSPQQH G++HSSNLCTEITLNTS +EI VCNLGS+NL H+ LD L+KT+R
Sbjct: 426 NLRSPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSVNLARHIGKDGLDVEALRKTVRT 485
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVIDIN+Y V +A+ SNLRHRPVGLG+MGF D L + IP +S EA++FAD+SM
Sbjct: 486 AVRMLDNVIDINFYTVPEARRSNLRHRPVGLGLMGFTDALFELGIPQASDEAVEFADRSM 545
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E++ Y+A AS ELA E+G Y S+DGSLW +GILP DSL+LL + RG L ++ S +L+
Sbjct: 546 EVLSYHAISASVELAGERGAYPSFDGSLWSRGILPLDSLRLLAEARGEDELDIDTSSTLD 605
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR R++ GMRNSN +AIAPTATISNI GV SIEP + NL +KSN+SGEFT +N Y
Sbjct: 606 WDALRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPY 665
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV++LK++GLWDE M+ LK DG L I R+P++L+K+YATAFE W+++A + RQK
Sbjct: 666 LVRDLKRRGLWDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDAAARRQK 725
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
WIDQ+QSLN+Y++ SG+ LD Y+ AW RGLKTTYYLRS +A +KS G D L
Sbjct: 726 WIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLR-GTDG-RL 783
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ C I D +CE+CQ
Sbjct: 784 NAVAPAVPAVPADASGAAAACRI-----DDPDCEACQ 815
>gi|325110862|ref|YP_004271930.1| ribonucleoside-diphosphate reductase subunit alpha [Planctomyces
brasiliensis DSM 5305]
gi|324971130|gb|ADY61908.1| ribonucleoside-diphosphate reductase, alpha subunit [Planctomyces
brasiliensis DSM 5305]
Length = 953
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/761 (55%), Positives = 561/761 (73%), Gaps = 13/761 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y +V RL++ I + G + Y+ F +I GI + L+P L +
Sbjct: 194 IERDPAYDKVAGRLMLDVIYHDALGSAPSPKKLASVYRHQFEHYIIDGIAAERLSPGLRD 253
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES-N 119
FNL+ +++AL P RD F YLGL+ +YDRY +HI+G RIE PQFF+MR+AMGL++NE
Sbjct: 254 FNLTQIADALEPSRDALFQYLGLQTIYDRYLIHIDGRRIEAPQFFWMRVAMGLAVNEGEQ 313
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+E+ AI+FYN+LSSF F +TPTLFNS T+ QLSSCYLSTV DDL IF+ I +NA LS
Sbjct: 314 KEERAIQFYNMLSSFRFTSATPTLFNSATLHPQLSSCYLSTVSDDLEHIFKVISDNAKLS 373
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGGLGNDWT +R+ + I GTNG+SQGVIPFLKVVND AVAVNQGGKRKGA+CAYLET
Sbjct: 374 KWAGGLGNDWTNIRATNAHIHGTNGQSQGVIPFLKVVNDTAVAVNQGGKRKGAVCAYLET 433
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DIEEF+ELRKNTGDDRRRTHDM+ A W+PDLFMKRV WTLFSP +VPDLH+
Sbjct: 434 WHLDIEEFLELRKNTGDDRRRTHDMHTANWIPDLFMKRVEANDEWTLFSPDEVPDLHDLT 493
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
GKEFE Y+ YE + G++ L +K++A+ LWRK+L+ LFETGHPWIT+KD N+RSPQ
Sbjct: 494 GKEFENRYLEYEKMAEDGEMGLTRKVNAVELWRKMLTRLFETGHPWITWKDPSNVRSPQD 553
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++HSSNLCTEI LNTS E VCNLGSINL H+ +G L+ L++T+ AMRMLDN
Sbjct: 554 HCGVVHSSNLCTEILLNTSPTETAVCNLGSINLKTHIVDGALNLQMLEETVFTAMRMLDN 613
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDINYY ++A +N RHRPVG+G+MGFQD L M + Y+ EA++FAD+SME I Y+A
Sbjct: 614 VIDINYYPTEEAANANKRHRPVGMGLMGFQDALLAMDLSYTCPEAVEFADRSMEAISYFA 673
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS++LA E+GRYSSY+GS WD+G+LP D+L LLE+ RG + ++V+ S SL+W +R
Sbjct: 674 ILASSQLAAERGRYSSYEGSKWDRGLLPIDTLDLLEEARG-QAIEVDRSSSLDWDVVRKS 732
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+ + GMRNSNC+AIAPTATIS IIGVS SIEP+Y++L++KSNLSGEFT++N LV ELK
Sbjct: 733 VAENGMRNSNCMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEFTQVNSVLVTELKS 792
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
+GLWD M+ LKY+DG L+ I R+P D+++ Y TAFE+ P W++E + RQKW+D QS
Sbjct: 793 RGLWDSDMLDALKYYDGTLADIDRVPADIKERYQTAFEVDPYWLVECAARRQKWLDMGQS 852
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM---GI------DSV 710
LN+Y+ +GK+L + Y AW +GLKTTYYLR+++A +KS ++ GI +
Sbjct: 853 LNLYMQAPNGKRLHDMYFDAWKKGLKTTYYLRTLAATQVEKSTVDVNKFGIQPRWMKNKS 912
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVN--ECESCQ 749
N +I + ++++ E N+ + + D N +CE+CQ
Sbjct: 913 NSSDIRVDRAHRDVIEETNDLPASMANATCDPNNPDCEACQ 953
>gi|283779061|ref|YP_003369816.1| ribonucleoside-diphosphate reductase subunit alpha [Pirellula
staleyi DSM 6068]
gi|283437514|gb|ADB15956.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula
staleyi DSM 6068]
Length = 945
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/761 (54%), Positives = 567/761 (74%), Gaps = 19/761 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEIKQIDIPIK----YKEYFSKFINKGIDNK 52
+E +PV++ V A+LL+ ++ G I P + Y+ YF +++ +
Sbjct: 192 VELEPVFTYVAAKLLLDRSDSQLLQNHHGAAILTPLSPSERRAGYQRYFPEYVRAAVARG 251
Query: 53 LLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L+ + ++NL ++ ++PERD YLG++ LYDRYFL EG+R+E+PQ F+MRIAMG
Sbjct: 252 QLHESMLDYNLEAIAAFIVPERDSLLAYLGVQTLYDRYFLAHEGLRVELPQIFWMRIAMG 311
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESI 172
L+L E N+ + +FY+LLS +F +TPTLFN+GT QLSSCYLSTV DDL GIF++I
Sbjct: 312 LALGEQNKLERVKEFYDLLSQLHFTSATPTLFNAGTCHPQLSSCYLSTVEDDLVGIFKAI 371
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
++NA+LSK+AGGLGNDWT +R+LG+ I+GT G+SQG++PFLKVV+D AVAVNQGGKRKGA
Sbjct: 372 QDNAILSKWAGGLGNDWTNIRALGATIRGTGGKSQGIVPFLKVVSDAAVAVNQGGKRKGA 431
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
+CAYLETWH+DIEEF+ELR+ TGD+RRRTHD++ A W+PDLFMKRV+ + TWTLFSP +V
Sbjct: 432 VCAYLETWHLDIEEFLELRRTTGDERRRTHDLHTANWIPDLFMKRVLARDTWTLFSPNEV 491
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+ +G+ FE+ Y+ YE G+IKLF+++SA+ LWRK+L++LFETGHPW+T+KD
Sbjct: 492 PDLHHTYGRAFEQKYLDYEQAADEGRIKLFRRVSAVDLWRKMLTLLFETGHPWVTWKDPS 551
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
NIRSPQ HVG++H+SNLCTEI LN S E VCNLGS+NL H+ +G LD L++TIR
Sbjct: 552 NIRSPQDHVGVVHNSNLCTEILLNNSAEETAVCNLGSVNLGAHITDGVLDLAMLERTIRT 611
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+RMLDNVID+N+Y +A +NLRHRP+GLG+MGFQD L+ M+I Y+S A++FAD+SM
Sbjct: 612 AVRMLDNVIDLNFYPTPEAANANLRHRPIGLGLMGFQDALYAMQISYASDRAVQFADESM 671
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I Y+A AS+ELA E+G+Y+S+ GS WD+G LP D++ L+E+ERG K + V + LN
Sbjct: 672 EAISYFALLASSELARERGKYASFAGSKWDRGYLPIDTIDLVEQERGIK-IDVPRTAQLN 730
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W+ +R I++ G+RNSN +AIAPTATISNI GVS SIEPTYRNL++KSNLSGEFT++N +
Sbjct: 731 WEVVRRAIREQGLRNSNVLAIAPTATISNIAGVSQSIEPTYRNLYVKSNLSGEFTQVNEW 790
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV+ELK GLW E M+ LKY+DG L+ I+ IP ++++ Y TAFEI P W+IE + RQK
Sbjct: 791 LVEELKGLGLWSEEMLDQLKYYDGELAPIAEIPAEVKERYRTAFEIEPRWLIECAARRQK 850
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM---GIDS 709
WID QSLN+Y++ SG+KLDE Y LAW GLKTTYYLR+++A +KS ++ GI
Sbjct: 851 WIDMGQSLNLYLAAPSGRKLDEMYFLAWKLGLKTTYYLRTLAATQVEKSTIDVNRFGIQP 910
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDV-NECESCQ 749
+ S G +I+ ++ E+ ++ +CE+CQ
Sbjct: 911 RWMKNKSASG------DIQIDRTLASAPEVCNLGGDCEACQ 945
>gi|159899094|ref|YP_001545341.1| ribonucleoside-diphosphate reductase subunit alpha [Herpetosiphon
aurantiacus DSM 785]
gi|159892133|gb|ABX05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Herpetosiphon
aurantiacus DSM 785]
Length = 806
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/749 (54%), Positives = 554/749 (73%), Gaps = 9/749 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P YS V A LL + EV G+ + + +Y F +I GI LL+PKLA
Sbjct: 67 IEQEPDYSFVAAALLASQLHFEVLGEYLATPAVVPRYASAFVDYIQAGIAQGLLDPKLAS 126
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L+ A++PERD Y GL+ LYDRYF+ +G+R E+PQ F+MR+AMGL+LNE++R
Sbjct: 127 FDLARLAAAIVPERDALLAYPGLQTLYDRYFIQWQGLRRELPQIFWMRVAMGLALNEADR 186
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
E ++FY +LS F+F +TPTLFN+ T QLSSCYLSTV DDL IF +I +NA+LSK
Sbjct: 187 EAQTLRFYEVLSQFHFTSATPTLFNAATTHPQLSSCYLSTVGDDLEAIFGAISDNAMLSK 246
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT VR+LG+PI GTNG SQGVIPFLK+VND A+AVNQGGKRKGA+CAYLE W
Sbjct: 247 WAGGLGNDWTPVRALGAPIHGTNGVSQGVIPFLKIVNDTAIAVNQGGKRKGAVCAYLEAW 306
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H D+E+F++LRK TGD+RRRTHDM+ A+WVPDL M+RV+ +W+LFSP +VPDLH+ +G
Sbjct: 307 HADLEDFLDLRKPTGDERRRTHDMHTALWVPDLLMERVLSNGSWSLFSPDEVPDLHDLYG 366
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
++F Y YE G ++ +++ A+ LWRK+L+ LFETGHPWIT+KDA N+RSPQ H
Sbjct: 367 QDFAVRYAEYEALAAQGLMRSARQVEAVALWRKVLTRLFETGHPWITWKDAANVRSPQDH 426
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG+IHSSNLCTEI LNTS +EI VCNLGSINL H+++G LD KL+ T+ A+RMLDNV
Sbjct: 427 VGVIHSSNLCTEILLNTSADEIAVCNLGSINLAAHIRDGSLDLEKLRTTVTTAVRMLDNV 486
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+Y +A +N RHRP+GLG+MGFQD L+ +KI Y+S+ A++F+D+SME I Y+A
Sbjct: 487 IDINFYPRPQAAQANARHRPIGLGLMGFQDALYALKIGYASQAAVEFSDRSMEAIAYFAV 546
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS ELA E+G Y S+ GS WD+G+LP DSL +L ++R SK +++ S +W+ LR +
Sbjct: 547 AASIELARERGAYPSFRGSKWDRGMLPIDSLAILAEQRDSK-PELDHSSHYDWQPLREAL 605
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++G+RNSN +AIAPTATI+NI+G S SIEPTYR+L++KSNLSG+FT +NR LV LK +
Sbjct: 606 AQYGIRNSNLLAIAPTATIANIVGTSQSIEPTYRHLYVKSNLSGDFTTVNRALVDALKAR 665
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLWD ++A LKY+DG +SQI RIP +L+ + TAFEI+P W+I + RQKWID QSL
Sbjct: 666 GLWDVDLLAELKYYDGAISQIERIPAELKTQFLTAFEIAPEWLIACAARRQKWIDMGQSL 725
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y++ SGK+L+E Y AW GLKTTYYLR+++A +KS + I+ + ++
Sbjct: 726 NLYVAETSGKRLNEIYLTAWRMGLKTTYYLRTLAATQIEKSTLD--INRFGVQPRWMRNR 783
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+++ + +N C I D CE+C+
Sbjct: 784 SESASVLSDN-VCPI-----DDPSCEACE 806
>gi|269839639|ref|YP_003324331.1| ribonucleoside-diphosphate reductase subunit alpha [Thermobaculum
terrenum ATCC BAA-798]
gi|269791369|gb|ACZ43509.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermobaculum
terrenum ATCC BAA-798]
Length = 819
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/749 (54%), Positives = 552/749 (73%), Gaps = 7/749 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y +V +RL++ I +E +G + ++ Y+E F ++++ I L+ +LA
Sbjct: 78 IERDPAYDKVASRLMLEQIYQESWGWVPSEAELAATYREMFPRYVHACISAGRLSEELAR 137
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L+ L++AL PERD + Y+GL+ LYDRY L +EG R+E PQ+F+MR+AMGL+L E +
Sbjct: 138 FDLARLASALRPERDEKLRYIGLQTLYDRYLLDVEGRRLEAPQYFWMRVAMGLALREDDP 197
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
A +FY+LLSS F+ +TPTLFNSGT QLSSCYLSTV DDL IF+ I +NA LSK
Sbjct: 198 NARAAQFYDLLSSLRFVSATPTLFNSGTPHPQLSSCYLSTVEDDLEHIFKVIGDNAKLSK 257
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGGLGNDWT+VR+ G+ I+GT+G+SQGVIPFLK+VND AVAVNQGGKRKGA+C YLE W
Sbjct: 258 WAGGLGNDWTRVRATGALIRGTHGKSQGVIPFLKIVNDTAVAVNQGGKRKGAVCCYLEPW 317
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D EEF+ELRKNTGD+RRRTHDM+ A WVPDLFM+RV + TWTLFSP +VPDLH +G
Sbjct: 318 HLDFEEFLELRKNTGDERRRTHDMHTASWVPDLFMRRVQEGGTWTLFSPNEVPDLHELYG 377
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE Y+ YE + GK++ K++ A LWRK+LSML+ETGHPWI FKD NIRS Q H
Sbjct: 378 RAFERRYVEYERMAEEGKLRQHKRVDAKMLWRKMLSMLWETGHPWIAFKDPSNIRSAQDH 437
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
VG+IHSSNLCTEI L TS+ E VCNLGSINL H+ LD KL +T+R A+RMLDNV
Sbjct: 438 VGVIHSSNLCTEILLPTSREETAVCNLGSINLVEHLSGDGLDEAKLAETVRTAVRMLDNV 497
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+Y +A+ SNLRHRP+GLGIMGF D L ++IPY+S +A++F+DQ+ME+I ++A
Sbjct: 498 IDINFYPTPEARRSNLRHRPIGLGIMGFHDALLALRIPYASPQAVEFSDQTMELISWHAI 557
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS+ELA E+GRY SY GS W +G+LP D+++LLE+ERG L+++ + L+W +R +
Sbjct: 558 MASSELAAERGRYPSYQGSKWSRGLLPIDTIELLERERGGD-LEMDRTARLDWGPVREAV 616
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++G+RNS +AIAPTATISNI GVS SIEP YRNL +KSNLSG+FT +N YLV++LK+
Sbjct: 617 ARWGVRNSQIMAIAPTATISNIAGVSQSIEPHYRNLFVKSNLSGDFTIVNPYLVEDLKRL 676
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW + M+ +KY+DG++ I IPD+++ +Y TA EI P W+IE S RQKW+D QSL
Sbjct: 677 GLWSQEMLDRIKYYDGSILPIEEIPDEVKHLYLTAHEIDPLWLIECASRRQKWVDMGQSL 736
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
NIY++ SGKKL E Y AW +GLKTTYYLR++ A +K++ ++ V + +
Sbjct: 737 NIYVAEPSGKKLHEIYFAAWRKGLKTTYYLRAVGATNVEKASMDINRFGVQPRWMRSRSA 796
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ ++ C + +CE+CQ
Sbjct: 797 SSRVRIVREGSTCQLG------EDCEACQ 819
>gi|298243908|ref|ZP_06967715.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
racemifer DSM 44963]
gi|297556962|gb|EFH90826.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
racemifer DSM 44963]
Length = 846
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/765 (55%), Positives = 558/765 (72%), Gaps = 17/765 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVF----GKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP 56
+E +P Y+ V ARLL+ + E + D YK Y S ++ G+ L+P
Sbjct: 83 IEFEPAYTFVAARLLLISLYNEALSTTQATRVGLNDAASIYKNYLSDYVEFGVSKGYLDP 142
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+ E++L L++A+ PERD F Y GL+ILYDRYFL R E+PQ +MR+AMGL+ N
Sbjct: 143 RFQEYDLIELASAIHPERDQLFAYQGLQILYDRYFLQDNNRRFELPQLLWMRVAMGLAFN 202
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
E ++E AI+FY LLS F F +TPTLFN+GT QLSSCYL+TV DDL+ IF+ I++NA
Sbjct: 203 EEHKEARAIEFYELLSQFYFTSATPTLFNAGTTHPQLSSCYLTTVDDDLFHIFKCIQDNA 262
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LLSK+AGGLGNDWT+VR+LG+ IKGTNG SQG+IPFLKVVND AVAVNQGGKRKGA+CAY
Sbjct: 263 LLSKWAGGLGNDWTRVRALGAHIKGTNGISQGIIPFLKVVNDTAVAVNQGGKRKGAVCAY 322
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
+E WH+DIEEF++LRKNTGDDRRRTHDM+ A W+ DLFMKRV + WTLFSP V DLH
Sbjct: 323 IENWHLDIEEFLDLRKNTGDDRRRTHDMHTACWISDLFMKRVERNEQWTLFSPDVVSDLH 382
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +GK FE+ Y YE + G+I ++++SAL LWRK+L+ LFETGHPWITFKD N+RS
Sbjct: 383 DLYGKAFEQRYEEYERMVEAGQITHYRRVSALDLWRKMLTRLFETGHPWITFKDPSNVRS 442
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
PQ H G++HSSNLCTEI LNTS +E VCNLGSINL H+ +GKL+ +L+KT+R A+RM
Sbjct: 443 PQDHAGVVHSSNLCTEILLNTSNDETAVCNLGSINLAAHIIDGKLNHERLQKTVRTAVRM 502
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
LDNVIDINYY +A+ +NLRHRPVGLG+M FQD L+ + + Y+S+ AI+FAD+SME I
Sbjct: 503 LDNVIDINYYPTDEARNANLRHRPVGLGLMAFQDALYKLGVSYASEAAIEFADRSMEAIS 562
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
YYA AS+ELA E G Y SY GS WD+GILP DS+ +LE+ERG K + ++ S +L+W K+
Sbjct: 563 YYAILASSELATEHGTYGSYQGSKWDRGILPIDSIAILEEERGQK-IDMDRSMTLDWDKV 621
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +K+ GMRNSN +AIAPTATIS+I+GVS SIEP+Y+NL++KSNLSGEFT IN +LV +
Sbjct: 622 RTAVKQNGMRNSNVMAIAPTATISSIVGVSQSIEPSYKNLYVKSNLSGEFTIINSFLVDD 681
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
LK+ +WD + + LKY+DG+L +++ +P+++R+ Y TAF+I P W+I S RQKWID
Sbjct: 682 LKRLEIWDRNTLEALKYYDGSLQEMTFLPEEIRQRYLTAFDIEPRWLIACASRRQKWIDM 741
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEIS 716
QS+++Y+ N SGKKL + Y+LAW GLKTTYYLR+++A +KS ++ + +
Sbjct: 742 GQSIDLYLYNPSGKKLSDVYQLAWNSGLKTTYYLRTLAATQVEKSTVDINRFGIQPRWMK 801
Query: 717 IKGYNKNLQEIKNN-----KKCLINSEI-------NDVNECESCQ 749
+ N+Q + N K I E+ N ++CE+CQ
Sbjct: 802 NSSPSSNIQVERENQAQQPKPTPIPLELSGEGAVCNLGDDCEACQ 846
>gi|166154171|ref|YP_001654289.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis 434/Bu]
gi|166155046|ref|YP_001653301.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335415|ref|ZP_07223659.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2tet1]
gi|339625585|ref|YP_004717064.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2c]
gi|165930159|emb|CAP03643.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis 434/Bu]
gi|165931034|emb|CAP06597.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|339460610|gb|AEJ77113.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
trachomatis L2c]
gi|440526646|emb|CCP52130.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/8200/07]
gi|440536470|emb|CCP61983.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/795]
gi|440538252|emb|CCP63766.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L1/1322/p2]
gi|440539142|emb|CCP64656.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L1/115]
gi|440540032|emb|CCP65546.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L1/224]
gi|440540922|emb|CCP66436.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2/25667R]
gi|440542699|emb|CCP68213.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/UCH-2]
gi|440543590|emb|CCP69104.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/Canada2]
gi|440544481|emb|CCP69995.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/LST]
gi|440545371|emb|CCP70885.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/Ams1]
gi|440546261|emb|CCP71775.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/CV204]
gi|440914523|emb|CCP90940.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/Ams2]
gi|440915413|emb|CCP91830.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/Ams3]
gi|440916305|emb|CCP92722.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/Canada1]
gi|440917198|emb|CCP93615.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/Ams4]
gi|440918089|emb|CCP94506.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L2b/Ams5]
Length = 1047
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/702 (58%), Positives = 527/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYALVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+N A W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNTASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSM+FETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMVFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|15605562|ref|NP_220348.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis D/UW-3/CX]
gi|237803259|ref|YP_002888453.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis B/Jali20/OT]
gi|255311667|ref|ZP_05354237.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis 6276]
gi|255317968|ref|ZP_05359214.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis 6276s]
gi|385241305|ref|YP_005809146.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/11222]
gi|7388066|sp|O84834.2|RIR1_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
AltName: Full=Ribonucleotide reductase
gi|6578115|gb|AAC68424.2| Ribonucleoside Reductase, Large Chain [Chlamydia trachomatis
D/UW-3/CX]
gi|231274493|emb|CAX11289.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis B/Jali20/OT]
gi|296437313|gb|ADH19483.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/11222]
gi|440525757|emb|CCP51008.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis K/SotonK1]
gi|440528433|emb|CCP53917.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis D/SotonD5]
gi|440529324|emb|CCP54808.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis D/SotonD6]
gi|440532898|emb|CCP58408.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/SotonG1]
gi|440533792|emb|CCP59302.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis Ia/SotonIa1]
gi|440534686|emb|CCP60196.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis Ia/SotonIa3]
Length = 1047
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|385240377|ref|YP_005808219.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/9768]
gi|385243154|ref|YP_005810993.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/9301]
gi|385246762|ref|YP_005815584.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/11074]
gi|296436382|gb|ADH18556.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/9768]
gi|296438241|gb|ADH20402.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/11074]
gi|297140742|gb|ADH97500.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis G/9301]
Length = 1047
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGVWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|385244033|ref|YP_005811879.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis D-EC]
gi|385244913|ref|YP_005812757.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis D-LC]
gi|297748956|gb|ADI51502.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis D-EC]
gi|297749836|gb|ADI52514.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis D-LC]
Length = 1053
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 309 IEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 367
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 368 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 427
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 428 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 487
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 488 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 547
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 548 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 607
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 608 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 667
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 668 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 727
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 728 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 787
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 788 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 847
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 848 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 907
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 908 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 967
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 968 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1009
>gi|76789572|ref|YP_328658.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis A/HAR-13]
gi|376282839|ref|YP_005156665.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis A2497]
gi|76168102|gb|AAX51110.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis A/HAR-13]
gi|371908869|emb|CAX09502.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis A2497]
gi|438690767|emb|CCP50024.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis A/7249]
gi|438691852|emb|CCP49126.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis A/5291]
gi|438693225|emb|CCP48227.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis A/363]
Length = 1047
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYAFVAAELLIDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|237805180|ref|YP_002889334.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231273480|emb|CAX10396.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis B/TZ1A828/OT]
Length = 1047
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYAFVAAELLIDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|89898044|ref|YP_515154.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
felis Fe/C-56]
gi|89331416|dbj|BAE81009.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydophila felis
Fe/C-56]
Length = 1045
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/750 (56%), Positives = 550/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + +E GK I D+ +K+YF ++I G D LNP+L E
Sbjct: 301 IEKEPDYAYVAAELLLDVVCQEAIGKSIMDADLVEAHKQYFKQYILDG-DQYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES-N 119
++L L+ AL RD QF+Y+G++ LYDRY EG R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDHQFSYMGVQTLYDRYLNQYEGRRLETTQIFWMRVSMGLALNEGED 419
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLSSF + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 420 KTSWAITFYNLLSSFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+S GVIPF+KV ND AVAVNQGGKRKGA C YLET
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSHGVIPFIKVANDTAVAVNQGGKRKGATCVYLET 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ +K TWTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKGTWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE + G+IKL+KKI A LWRK+LSML+ETGHPWITFKD NIRS Q
Sbjct: 600 GFEFDKLYEEYERKVDTGEIKLYKKIPAEDLWRKMLSMLYETGHPWITFKDPSNIRSAQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN+S++E VCNLGS+NL H+KNG +D L +TI IA+R+LDN
Sbjct: 660 HAGVVRCSNLCTEILLNSSESETAVCNLGSVNLVEHIKNGDIDEEMLGETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y ++A +NL HR VGLG+MGFQD L+ + I Y+S EA++FAD+S E+I YYA
Sbjct: 720 VIDINFYPTQEAANANLTHRAVGLGMMGFQDALYKLNISYASPEAVEFADKSSELIAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG L ++ S +W +R
Sbjct: 780 LLSSSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEDKLLMDTSCRKDWAPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKQ 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKW+D QS
Sbjct: 900 LGLWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWLDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
+N+Y+S +GKKL Y AW +GLKTTYYLRS++A +KS ++ + + K
Sbjct: 960 VNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + + + + E CESCQ
Sbjct: 1020 ASTSIVVERTRETPVCSLE----EGCESCQ 1045
>gi|385270571|ref|YP_005813731.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis A2497]
gi|347975711|gb|AEP35732.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis A2497]
Length = 1053
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 309 IEKEPDYAFVAAELLIDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 367
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 368 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 427
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 428 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 487
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 488 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 547
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 548 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 607
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 608 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 667
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 668 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 727
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 728 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 787
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 788 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 847
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 848 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 907
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 908 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 967
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 968 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1009
>gi|255349231|ref|ZP_05381238.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis 70]
gi|255503768|ref|ZP_05382158.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis 70s]
Length = 1047
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/702 (58%), Positives = 527/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H E R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EAI+FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAIEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|255507449|ref|ZP_05383088.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis D(s)2923]
gi|385242232|ref|YP_005810072.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/11023]
gi|385245842|ref|YP_005814665.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/150]
gi|386263185|ref|YP_005816464.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis Sweden2]
gi|389858524|ref|YP_006360766.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis F/SW4]
gi|389859400|ref|YP_006361641.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/SW3]
gi|389860276|ref|YP_006362516.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
trachomatis F/SW5]
gi|289525873|emb|CBJ15355.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis Sweden2]
gi|296435458|gb|ADH17636.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/150]
gi|296439175|gb|ADH21328.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/11023]
gi|380249596|emb|CCE14893.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis F/SW5]
gi|380250471|emb|CCE14004.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis F/SW4]
gi|380251349|emb|CCE13115.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
trachomatis E/SW3]
gi|440527542|emb|CCP53026.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis D/SotonD1]
gi|440530215|emb|CCP55699.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/SotonE4]
gi|440531112|emb|CCP56596.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/SotonE8]
gi|440532006|emb|CCP57516.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis F/SotonF3]
gi|440535582|emb|CCP61092.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis E/Bour]
Length = 1047
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 527/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H E R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|440537363|emb|CCP62877.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L1/440/LN]
gi|440541810|emb|CCP67324.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
trachomatis L3/404/LN]
Length = 1047
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/702 (58%), Positives = 526/702 (74%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G +L N +L
Sbjct: 303 IEKEPDYALVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEGGTYRL-NAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQE 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+N A W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNTASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSM+FETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMVFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|15834834|ref|NP_296593.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
muridarum Nigg]
gi|270285000|ref|ZP_06194394.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
muridarum Nigg]
gi|270289023|ref|ZP_06195325.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
muridarum Weiss]
gi|301336398|ref|ZP_07224600.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
muridarum MopnTet14]
gi|14195148|sp|Q9PL93.1|RIR1_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
AltName: Full=Ribonucleotide reductase
gi|7190252|gb|AAF39086.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
muridarum Nigg]
Length = 1047
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/702 (57%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE + D+ Y+++F ++I +G D+ LNP+L
Sbjct: 303 IEKEPDYAFVAAELLLDVVYKEALDRSRGDEDLEQVYRDHFKRYIMEG-DSYRLNPELKN 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L+NA+ RDLQF+Y+G++ LYDRYF H +G R+E PQ F+MR+AMGL+L E +
Sbjct: 362 LFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWMRVAMGLALKEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 422 KTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVNIYKVISDNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNG+SQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGDDRRR HD+N A W+PDLF KR+ +K +WTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+L+KK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGS+NL H+ + LD KL +TI IA+RMLDN
Sbjct: 662 HTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMDTSVRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I++ GMRN +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 IREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I R+PD ++ I+ TAFEI P WI+E S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>gi|330443802|ref|YP_004376788.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
pecorum E58]
gi|328806912|gb|AEB41085.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
pecorum E58]
Length = 1047
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/702 (56%), Positives = 536/702 (76%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL + +E G + ++ YF ++I +G +N LNP+L E
Sbjct: 303 IEKEPDYAFVAADLLHEVVYQETVGLSAVSSKLTDAHRRYFKQYILEG-ENYRLNPQLKE 361
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ L RD +F+Y+G++ L+DRYF EG R+E Q F+MR++MGL+LNE
Sbjct: 362 YDLDALAEVLDLTRDRKFSYMGVQNLFDRYFNQHEGKRLETAQIFWMRVSMGLALNEGKE 421
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FY+LLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NALLS
Sbjct: 422 KTSWAITFYHLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLQHIYKVISDNALLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ G+ IKGTNG+SQGVIPF+KV ND AVAVNQGGKRKGA C YLE+
Sbjct: 482 KWAGGIGNDWTDVRARGAKIKGTNGKSQGVIPFIKVANDTAVAVNQGGKRKGAACVYLES 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ +K WTLFSP DVP LH +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLKQKGIWTLFSPDDVPGLHEAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE+ Y YE + + G+I+L++K+ A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 602 GLEFEKLYEEYEQKIETGEIQLYRKVEAEVLWRKMLSMLYETGHPWLTFKDPSNIRAAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN+S++E VCNLGS+NL H++NG+++ KL +TIRIA+R+LDN
Sbjct: 662 HVGVVRCSNLCTEILLNSSESETAVCNLGSLNLVEHLENGEINEAKLAETIRIAVRILDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y + +A +NL HR VGLG MGFQD L+ I Y+S+EA++FAD+ E+I Y+A
Sbjct: 722 VIDLNFYPIPEAAQANLTHRAVGLGCMGFQDALYEKNISYASQEAVEFADEVAEIIAYHA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+STELA+E+G Y+SY GS WD+G+LP D++ LL++ RG +Y+ ++ S +W+ +R
Sbjct: 782 ILSSTELAKERGVYASYKGSKWDRGLLPIDTIDLLKQARGEQYVLMDTSCRKDWEPVREA 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
++K+GMRNS+ + IAPTATISNIIG++ SIEPTY+NL +KSNLSGEFT N YL+++LK
Sbjct: 842 VRKYGMRNSHLMTIAPTATISNIIGITQSIEPTYKNLFVKSNLSGEFTIPNVYLIRKLKS 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWDE M+ +LKYFDG+LS+I RIP++L+K++ TAFEI P W+IE S RQKWID QS
Sbjct: 902 LGLWDEDMLDDLKYFDGSLSEIERIPENLKKVFVTAFEIEPEWLIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ +GKKL Y AW +GLKTTYYLRS++A +KS
Sbjct: 962 LNLYLAEPNGKKLSTMYLTAWEKGLKTTYYLRSLAATSVEKS 1003
>gi|297621806|ref|YP_003709943.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
chondrophila WSU 86-1044]
gi|297377107|gb|ADI38937.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
chondrophila WSU 86-1044]
Length = 918
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/749 (55%), Positives = 537/749 (71%), Gaps = 18/749 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y +V A +L+ I +E+ +P FS +I KG++ K L+ L
Sbjct: 188 IEKEPAYDKVAANILLQKIYREIES-------LPFSN---FSSYIQKGVEAKRLHSDLLG 237
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+ LL A+ ERD QF+Y GL+ LYDRY + I E+PQFF+MR++MGL+LNE+++
Sbjct: 238 FDHRLLEEAMEHERDRQFSYQGLQTLYDRYLIRISEQVAELPQFFWMRVSMGLALNETDK 297
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
A++FY++LSSF+++ STPTLFNSGT QLSSCYLSTV DDL IF I ++A LSK
Sbjct: 298 NSKAVEFYHVLSSFDYISSTPTLFNSGTCHPQLSSCYLSTVQDDLNDIFRVISDDAKLSK 357
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGG+GNDWT VR+ + I GTNG+SQGVIPFLKVVND AVAVNQGGKRKGAIC YLETW
Sbjct: 358 WAGGIGNDWTNVRATQAHINGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGAICCYLETW 417
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+ EF++LRKNTGDDRRRTHDM+ A W+PDLFMKRV + WTLFSP +VPDLH+ +G
Sbjct: 418 HLDLPEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVEEDGEWTLFSPDEVPDLHDLYG 477
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ F++ Y YE + K GKIK ++ A+ LWRK+LS LFETGHPWIT+KD NIR Q+H
Sbjct: 478 RAFDKRYEHYEREAKAGKIKQYRTFKAIDLWRKMLSRLFETGHPWITWKDPSNIRGNQKH 537
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G+IHSSNLCTEI L TSK E VCNLGS+NL H+K GKLD L+KTI A+RMLDNV
Sbjct: 538 AGVIHSSNLCTEILLPTSKEETAVCNLGSVNLRNHIKEGKLDVSHLEKTIATAIRMLDNV 597
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+Y +A+ SNLRHRP+GLG+MGFQD L++M+IPY S+EAI FAD SME I Y+A
Sbjct: 598 IDINFYPTPEARESNLRHRPIGLGMMGFQDALYLMEIPYCSQEAIAFADSSMETISYFAI 657
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS+ LA+E+G Y S+ GS WD G+ P ++ LLE+ERG K + ++ S +WK L I
Sbjct: 658 KASSLLAKERGSYPSFKGSNWDLGLFPHQTMALLEEERGIK-IPIDQCSSRDWKTLLEII 716
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++ GMRNS+ +AIAPTATIS I+GVS SIEP Y NL KSNLSGEFT +N YLV+ LK
Sbjct: 717 RQNGMRNSHVLAIAPTATISQIVGVSQSIEPQYTNLFTKSNLSGEFTSVNHYLVETLKSL 776
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWD+ M+ LKY DG++ I RIP ++R+ + TAFE+ W+I + RQKWID QSL
Sbjct: 777 NLWDQEMLDELKYHDGSVQAIPRIPQEVRERFRTAFEVGAEWLIRCAAARQKWIDMGQSL 836
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y++ SG+KLDE Y+LAW GLKTTYYLR+ +A +KS + I+ ++ +K
Sbjct: 837 NLYLTEPSGRKLDEMYRLAWKLGLKTTYYLRTRAATQVEKSTLD--INKFDIQPKWMKNK 894
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + +C I D CE+CQ
Sbjct: 895 SASSSIAPRQGQCSI-----DDPTCEACQ 918
>gi|337294071|emb|CCB92056.1| Ribonucleoside-diphosphate reductase subunit alpha [Waddlia
chondrophila 2032/99]
Length = 1017
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/749 (55%), Positives = 536/749 (71%), Gaps = 18/749 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y +V A +L+ I +E+ +P FS +I KG++ K L+ L
Sbjct: 287 IEKEPAYDKVAANILLQKIYREIES-------LPFSN---FSSYIQKGVEAKRLHSDLLG 336
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+ LL A+ ERD QF+Y GL+ LYDRY + I E+PQFF+MR++MGL+LNE+++
Sbjct: 337 FDHRLLEEAMEHERDRQFSYQGLQTLYDRYLIRISEQVAELPQFFWMRVSMGLALNETDK 396
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
A++FY++LSSF+++ STPTLFNSGT QLSSCYLSTV DDL IF I ++A LSK
Sbjct: 397 NSKAVEFYHVLSSFDYISSTPTLFNSGTCHPQLSSCYLSTVQDDLNDIFRVISDDAKLSK 456
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+AGG+GNDWT VR+ + I GTNG+SQGVIPFLKVVND AVAVNQGGKRKGAIC YLETW
Sbjct: 457 WAGGIGNDWTNVRATQAHINGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGAICCYLETW 516
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+D+ EF++LRKNTGDDRRRTHDM+ A W+PDLFMKRV + WTLFSP +VPDLH+ +G
Sbjct: 517 HLDLPEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVEEDGEWTLFSPDEVPDLHDLYG 576
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ F++ Y YE + K GKIK ++ A+ LWRK+LS LFETGHPWIT+KD NIR Q+H
Sbjct: 577 RAFDKRYEHYEREAKAGKIKQYRTFKAIDLWRKMLSRLFETGHPWITWKDPSNIRGNQKH 636
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G+IHSSNLCTEI L TSK E VCNLGS+NL H+K GKLD L+KTI A+RMLDNV
Sbjct: 637 AGVIHSSNLCTEILLPTSKEETAVCNLGSVNLRNHIKEGKLDVSHLEKTIATAIRMLDNV 696
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDIN+Y +A+ SNLRHRP+GLG+MGFQD L++M+IPY S+EAI FAD SME I Y+A
Sbjct: 697 IDINFYPTPEARESNLRHRPIGLGMMGFQDALYLMEIPYCSQEAIAFADSSMETISYFAI 756
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS+ LA+E+G Y S+ GS WD G+ P ++ LLE+ERG K + ++ S +WK L I
Sbjct: 757 KASSLLAKERGSYPSFKGSNWDLGLFPHQTMALLEEERGIK-IPIDQCSSRDWKTLLEII 815
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++ GMRNS+ +AIAPTATIS I+GVS SIEP Y NL KSNLSGEFT +N YLV+ LK
Sbjct: 816 RQNGMRNSHVLAIAPTATISQIVGVSQSIEPQYTNLFTKSNLSGEFTSVNHYLVETLKSL 875
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWD+ M+ LKY DG++ I RIP ++R+ + TAFE+ W+I + RQKWID QSL
Sbjct: 876 NLWDQEMLDELKYHDGSVQAIPRIPQEVRERFRTAFEVGAEWLIRCAAARQKWIDMGQSL 935
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY 720
N+Y++ SG+KLDE Y+LAW GLKTTYYLR+ +A +KS + I+ + +K
Sbjct: 936 NLYLTEPSGRKLDEMYRLAWKLGLKTTYYLRTRAATQVEKSTLD--INKFGIQPKWMKNK 993
Query: 721 NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + +C I D CE+CQ
Sbjct: 994 SASSSIAPRQGQCSI-----DDPTCEACQ 1017
>gi|29840534|ref|NP_829640.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
caviae GPIC]
gi|29834883|gb|AAP05518.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
caviae GPIC]
Length = 1044
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/702 (58%), Positives = 530/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL + +E GK D+ K+ F +I G + +L NP+L E
Sbjct: 300 IEKEPDYAYVAAELLTDVVYQETMGKSATDSDLAEAQKQCFKNYILNGEEYRL-NPRLKE 358
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES-N 119
++L L+ AL RD QF+Y+G++ LYDRYF EG R+E Q F+MRI+MGL+LNE +
Sbjct: 359 YDLDALAEALDISRDRQFSYMGVQNLYDRYFNQHEGRRLETAQIFWMRISMGLALNEGED 418
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 419 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVISDNAMLS 478
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR++GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA+C YLE
Sbjct: 479 KWAGGIGNDWTGVRAIGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAMCVYLEI 538
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ +K TWTLFSP DVP LH +
Sbjct: 539 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLDQKGTWTLFSPDDVPGLHEAY 598
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE + G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR Q
Sbjct: 599 GFEFDKLYEEYERKIDNGEIKLYKKIPAEDLWRKMLSMLYETGHPWLTFKDPSNIRGAQD 658
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL +TI IA+R+LDN
Sbjct: 659 HAGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLAETISIAIRILDN 718
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+ID+N+Y +A +NL HR VGLG MGFQD L+ + I Y+S+EA++FAD+S E+I YYA
Sbjct: 719 IIDLNFYPTPEAANANLSHRAVGLGQMGFQDALYKLNISYASQEAVEFADKSAELIAYYA 778
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 779 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTVELLKEYRGEENVLMDTSCRKDWTPVREA 838
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 839 IKAYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEQLKK 898
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKWID QS
Sbjct: 899 LGIWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWIDMGQS 958
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y+S +GKKL Y AW +GLKTTYYLRS++A +KS
Sbjct: 959 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKS 1000
>gi|406593723|ref|YP_006740902.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci NJ1]
gi|405789595|gb|AFS28337.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci NJ1]
Length = 1045
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/750 (55%), Positives = 550/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LLM + +E GK D+ K+ F +I G + LNP+L E
Sbjct: 301 IEKEPDYAYVAAELLMDVVYQETMGKTATDSDLAEAQKQCFKNYILNG-ETYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL RD +F+Y+G++ LYDRYF EG+R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDRKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGLALNEGDD 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 420 KTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA+C YLE
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAMCVYLEI 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ +K WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF+ Y YE++ G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 600 GVEFDRLYEEYESKVDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPSNIRAVQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL++TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLEETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+ID+N+Y ++A +NL HR +GLGIMGFQD L+ + I Y+S EA++FAD+S E++ YYA
Sbjct: 720 IIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEFADKSSELVAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 780 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDTSCRKDWTPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+ +LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLINKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD+ M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKWID QS
Sbjct: 900 LGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWIDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y+S +GKKL Y AW +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 960 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K + + E CESCQ
Sbjct: 1020 ASTSIVVDRAKKTPVCSFE----EGCESCQ 1045
>gi|407455607|ref|YP_006734498.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci GR9]
gi|407457024|ref|YP_006735597.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci VS225]
gi|407458345|ref|YP_006736650.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci WS/RT/E30]
gi|407460964|ref|YP_006738739.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci WC]
gi|449071421|ref|YP_007438501.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
psittaci Mat116]
gi|405782150|gb|AFS20899.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci GR9]
gi|405784285|gb|AFS23032.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci VS225]
gi|405785088|gb|AFS23834.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci WS/RT/E30]
gi|405786760|gb|AFS25504.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci WC]
gi|449039929|gb|AGE75353.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
psittaci Mat116]
Length = 1045
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/750 (55%), Positives = 550/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LLM + +E GK D+ K+ F +I G + LNP+L E
Sbjct: 301 IEKEPDYAYVAAELLMDVVYQETMGKTATDSDLAEAQKQCFKNYILNG-ETYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL RD +F+Y+G++ LYDRYF EG+R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGLALNEGDD 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 420 KTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA YLET
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGATSVYLET 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ ++ WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE++ G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 600 GIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPSNIRAVQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL +TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLGETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y ++A +NL HR VGLGIMGFQD L+ + I Y+S EA++FAD+S E++ YYA
Sbjct: 720 VIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEFADKSSELVAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 780 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDTSCRKDWTPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+ +LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLINKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD+ M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKW+D QS
Sbjct: 900 LGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWVDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y+S +GKKL Y AW +GLKTTYYLRS++A +KS ++ + + K
Sbjct: 960 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K + + E CESCQ
Sbjct: 1020 ASTSIVVDRAKKTPVCSFE----EGCESCQ 1045
>gi|407459593|ref|YP_006737696.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci M56]
gi|405786195|gb|AFS24940.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci M56]
Length = 1045
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/750 (55%), Positives = 550/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LLM + +E GK D+ K+ F +I G + LNP+L E
Sbjct: 301 IEKEPDYAYVAAELLMDVVYQETMGKTATDSDLAEAQKQCFKNYILNG-ETYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL RD +F+Y+G++ LYDRYF EG+R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGLALNEGDD 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 420 KTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA YLET
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGATSVYLET 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ ++ WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE++ G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 600 GIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPSNIRAVQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL +TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLGETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y ++A +NL HR VGLGIMGFQD L+ + I Y+S EA++FAD+S E++ YYA
Sbjct: 720 VIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEFADKSSELVAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 780 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDTSCRKDWTPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+ +LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLINKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD+ M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKW+D QS
Sbjct: 900 LGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWVDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y+S +GKKL Y AW +GLKTTYYLRS++A +KS ++ + + K
Sbjct: 960 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K + + E CESCQ
Sbjct: 1020 ASTSIVVDRAKKTPVCSFE----EGCESCQ 1045
>gi|329943119|ref|ZP_08291893.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
psittaci Cal10]
gi|332287702|ref|YP_004422603.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 6BC]
gi|384450860|ref|YP_005663460.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 6BC]
gi|384451855|ref|YP_005664453.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 01DC11]
gi|384452829|ref|YP_005665426.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 08DC60]
gi|384453808|ref|YP_005666404.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci C19/98]
gi|384454787|ref|YP_005667382.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 02DC15]
gi|392376933|ref|YP_004064711.1| putative ribonucleotide reductase large subunit [Chlamydophila
psittaci RD1]
gi|407454335|ref|YP_006733443.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci 84/55]
gi|313848276|emb|CBY17277.1| putative ribonucleotide reductase large subunit [Chlamydophila
psittaci RD1]
gi|325507258|gb|ADZ18896.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 6BC]
gi|328814666|gb|EGF84656.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
psittaci Cal10]
gi|328914954|gb|AEB55787.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
psittaci 6BC]
gi|334692589|gb|AEG85808.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci C19/98]
gi|334693565|gb|AEG86783.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 01DC11]
gi|334694544|gb|AEG87761.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 02DC15]
gi|334695518|gb|AEG88734.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
psittaci 08DC60]
gi|405781094|gb|AFS19844.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci 84/55]
Length = 1045
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/750 (55%), Positives = 550/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LLM + +E GK D+ K+ F +I G + LNP+L E
Sbjct: 301 IEKEPDYAYVAAELLMDVVYQETMGKTATDSDLAEAQKQCFKNYILNG-ETYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL RD +F+Y+G++ LYDRYF EG+R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGLALNEGDD 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 420 KTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA YLET
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGATSVYLET 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ ++ WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE++ G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 600 GIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPSNIRAVQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL +TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLGETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y ++A +NL HR VGLGIMGFQD L+ + I Y+S EA++FAD+S E++ YYA
Sbjct: 720 VIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEFADKSSELVAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 780 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDTSCRKDWNPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+ +LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLINKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD+ M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKW+D QS
Sbjct: 900 LGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWVDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y+S +GKKL Y AW +GLKTTYYLRS++A +KS ++ + + K
Sbjct: 960 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K + + E CESCQ
Sbjct: 1020 ASTSIVVDRAKKTPVCSFE----EGCESCQ 1045
>gi|406592664|ref|YP_006739844.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci CP3]
gi|406594766|ref|YP_006741940.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydia
psittaci MN]
gi|410858716|ref|YP_006974656.1| putative ribonucleotide reductase large subunit [Chlamydia psittaci
01DC12]
gi|405783198|gb|AFS21946.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci MN]
gi|405788536|gb|AFS27279.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
psittaci CP3]
gi|410811611|emb|CCO02264.1| putative ribonucleotide reductase large subunit [Chlamydia psittaci
01DC12]
Length = 1045
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/750 (55%), Positives = 550/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LLM + +E GK D+ K+ F +I G + LNP+L E
Sbjct: 301 IEKEPDYAYVAADLLMDVVYQETMGKTATDSDLAEAQKQCFKNYILNG-ETYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL RD +F+Y+G++ LYDRYF EG+R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGLALNEGDD 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 420 KTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA YLET
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGATSVYLET 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ ++ WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE++ G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 600 GIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPSNIRAVQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL +TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLGETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y ++A +NL HR VGLGIMGFQD L+ + I Y+S EA++FAD+S E++ YYA
Sbjct: 720 VIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEFADKSSELVAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 780 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDTSCRKDWTPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+ +LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLINKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD+ M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKW+D QS
Sbjct: 900 LGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWVDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y+S +GKKL Y AW +GLKTTYYLRS++A +KS ++ + + K
Sbjct: 960 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K + + E CESCQ
Sbjct: 1020 ASTSIVVDRAKKTPVCSFE----EGCESCQ 1045
>gi|384449831|ref|YP_005662433.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
pneumoniae LPCoLN]
gi|269302785|gb|ACZ32885.1| ribonucleoside-diphosphate reductase alpha subunit [Chlamydophila
pneumoniae LPCoLN]
Length = 1044
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/751 (55%), Positives = 549/751 (73%), Gaps = 9/751 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ + A LL + +E G + ++ +K++F ++I G + +L NP+L +
Sbjct: 301 IEREPDYAFIAAELLTSSLYEETLGCNSQDPNLSEIHKKHFKEYILNGEEYRL-NPQLKD 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L LS L RD QF+Y+G++ LYDRYF EG R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQ 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NALLS
Sbjct: 420 KNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKVISDNALLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ G+ IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA+C YLE
Sbjct: 480 KWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAMCVYLEN 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ KK WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE+ Y YE + + G+I+L+KK+ A LWRK+LSML+ETGHPWITFKD NIRS Q
Sbjct: 600 GLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDPSNIRSNQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S++E VCNLGSINL H++NGKLD KLK+TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y +AK +NL HR VGLG+MGFQD L+ + I Y+S+EA++F+D+ E+I YYA
Sbjct: 720 VIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDECSEIIAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS+ LA+E+G Y+SY GS WD+G LP D+++LL++ RG + V+ S +W +R+
Sbjct: 780 ILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKKDWTPVRDT 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I+K+GMRNS +AIAPTATISNIIGV+ SIEP Y++L +KSNLSGEFT N YL+K+LK+
Sbjct: 840 IQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNTYLIKKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD M+ +LKYFDG+L +I RIP+ L+K++ TAFEI P WIIE S RQKWID S
Sbjct: 900 LGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQKWIDMGVS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y++ GKKL Y +AW +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 960 LNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNL-QEIKNNKKCLINSEINDVNECESCQ 749
+ ++ E K C + CESCQ
Sbjct: 1020 ASTSIVVERKTTPVCSME------EGCESCQ 1044
>gi|384449846|ref|YP_005662448.1| ribonucleoside-diphosphate reductase, alpha subunit, truncated
[Chlamydophila pneumoniae LPCoLN]
gi|269302770|gb|ACZ32870.1| ribonucleoside-diphosphate reductase, alpha subunit, truncated
[Chlamydophila pneumoniae LPCoLN]
Length = 815
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/751 (55%), Positives = 549/751 (73%), Gaps = 9/751 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ + A LL + +E G + ++ +K++F ++I G + +L NP+L +
Sbjct: 72 IEREPDYAFIAAELLTSSLYEETLGCNSQDPNLSEIHKKHFKEYILNGEEYRL-NPQLKD 130
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L LS L RD QF+Y+G++ LYDRYF EG R+E Q F+MR++MGL+LNE +
Sbjct: 131 YDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQ 190
Query: 121 EK-CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NALLS
Sbjct: 191 KNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKVISDNALLS 250
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ G+ IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA+C YLE
Sbjct: 251 KWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAMCVYLEN 310
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ KK WTLFSP DVP LH +
Sbjct: 311 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDDVPGLHEAY 370
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE+ Y YE + + G+I+L+KK+ A LWRK+LSML+ETGHPWITFKD NIRS Q
Sbjct: 371 GLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDPSNIRSNQD 430
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S++E VCNLGSINL H++NGKLD KLK+TI IA+R+LDN
Sbjct: 431 HVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKETISIAIRILDN 490
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y +AK +NL HR VGLG+MGFQD L+ + I Y+S+EA++F+D+ E+I YYA
Sbjct: 491 VIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDECSEIIAYYA 550
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS+ LA+E+G Y+SY GS WD+G LP D+++LL++ RG + V+ S +W +R+
Sbjct: 551 ILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKKDWTPVRDT 610
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I+K+GMRNS +AIAPTATISNIIGV+ SIEP Y++L +KSNLSGEFT N YL+K+LK+
Sbjct: 611 IQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNTYLIKKLKE 670
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD M+ +LKYFDG+L +I RIP+ L+K++ TAFEI P WIIE S RQKWID S
Sbjct: 671 LGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQKWIDMGVS 730
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y++ GKKL Y +AW +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 731 LNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQPRWMKNKS 790
Query: 720 YNKNL-QEIKNNKKCLINSEINDVNECESCQ 749
+ ++ E K C + CESCQ
Sbjct: 791 ASTSIVVERKTTPVCSME------EGCESCQ 815
>gi|15618892|ref|NP_225178.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
pneumoniae CWL029]
gi|15836515|ref|NP_301039.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
pneumoniae J138]
gi|16752044|ref|NP_445410.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
pneumoniae AR39]
gi|33242352|ref|NP_877293.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
pneumoniae TW-183]
gi|7388068|sp|Q9Z6S5.1|RIR1_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
AltName: Full=Ribonucleotide reductase
gi|4377312|gb|AAD19121.1| Ribonucleoside Reductase, Large Chain [Chlamydophila pneumoniae
CWL029]
gi|7189784|gb|AAF38661.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
pneumoniae AR39]
gi|8979357|dbj|BAA99191.1| ribonucleoside reductase, large chain [Chlamydophila pneumoniae J138]
gi|33236863|gb|AAP98950.1| ribonucleoside reductase large chain [Chlamydophila pneumoniae
TW-183]
Length = 1044
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/751 (55%), Positives = 547/751 (72%), Gaps = 9/751 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ + A LL + +E G + ++ +K++F ++I G + +L NP+L +
Sbjct: 301 IEREPDYAFIAAELLTSSLYEETLGCSSQDPNLSEIHKKHFKEYILNGEEYRL-NPQLKD 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L LS L RD QF+Y+G++ LYDRYF EG R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQ 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NALLS
Sbjct: 420 KNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKVISDNALLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ G+ IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA+C YLE
Sbjct: 480 KWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAMCVYLEN 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ KK WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE+ Y YE + + G+I+L+KK+ A LWRK+LSML+ETGHPWITFKD NIRS Q
Sbjct: 600 GLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDPSNIRSNQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S++E VCNLGSINL H++N KLD KLK+TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDKLDEEKLKETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y +AK +NL HR VGLG+MGFQD L+ + I Y+S+EA++F+D+ E+I YYA
Sbjct: 720 VIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDECSEIIAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS+ LA+E+G Y+SY GS WD+G LP D+++LL++ RG + V+ S +W +R+
Sbjct: 780 ILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKKDWTPVRDT 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I+K+GMRNS +AIAPTATISNIIGV+ SIEP Y++L +KSNLSGEFT N YL+K+LK+
Sbjct: 840 IQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNTYLIKKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD M+ +LKYFDG+L +I RIP+ L+K++ TAFEI P WIIE S RQKWID S
Sbjct: 900 LGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQKWIDMGVS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y++ GKKL Y AW +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 960 LNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNL-QEIKNNKKCLINSEINDVNECESCQ 749
+ ++ E K C + CESCQ
Sbjct: 1020 ASTSIVVERKTTPVCSME------EGCESCQ 1044
>gi|424825398|ref|ZP_18250385.1| ribonucleotide-diphosphate reductase, alpha subunit [Chlamydophila
abortus LLG]
gi|333410497|gb|EGK69484.1| ribonucleotide-diphosphate reductase, alpha subunit [Chlamydophila
abortus LLG]
Length = 1045
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/750 (55%), Positives = 551/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LLM + +E GK D+ K+ F +I G + LNP+L E
Sbjct: 301 IEKEPDYAYVAAELLMDVVYQETMGKTATDSDLAEAQKQCFKNYILNG-ETYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL RD +F+Y+G++ LYDRYF EG+R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGLALNEGDD 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSGT SQLSSCYLST+ DDL I++ I +NA+LS
Sbjct: 420 KTFWAITFYNLLSTFRYTPATPTLFNSGTRHSQLSSCYLSTIQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA YLET
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGATSVYLET 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ ++ WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE++ G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 600 GTEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPSNIRAVQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL++TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLEETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y ++A +NL HR +GLGIMGFQD L+ + I Y+S EA++FAD+S E++ YYA
Sbjct: 720 VIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEFADKSSELVAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 780 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDTSCRKDWTPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+ +LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLISKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD+ M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKWID QS
Sbjct: 900 LGLWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWIDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y+S +GKKL Y AW +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 960 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K + + E CESCQ
Sbjct: 1020 ASTSIVVDRAKKTPVCSFE----EGCESCQ 1045
>gi|62185357|ref|YP_220142.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
abortus S26/3]
gi|62148424|emb|CAH64192.1| putative ribonucleotide reductase large subunit [Chlamydophila
abortus S26/3]
Length = 1045
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/750 (55%), Positives = 551/750 (73%), Gaps = 6/750 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LLM + +E GK D+ K+ F +I G + LNP+L E
Sbjct: 301 IEKEPDYAYVAAELLMDVVYQEAMGKTATDSDLAEAQKQCFKNYILNG-ETYRLNPRLKE 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L L+ AL RD +F+Y+G++ LYDRYF EG+R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGLALNEGDD 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSGT SQLSSCYLST+ DDL I++ I +NA+LS
Sbjct: 420 KTFWAITFYNLLSTFRYTPATPTLFNSGTRHSQLSSCYLSTIQDDLAHIYKVISDNAMLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ GS IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA YLET
Sbjct: 480 KWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGATSVYLET 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ ++ WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF++ Y YE++ G+IKL+KKI A LWRK+LSML+ETGHPW+TFKD NIR+ Q
Sbjct: 600 GTEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPSNIRAVQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S+NE VCNLGS+NL H++NG ++ KL++TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLEETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y ++A +NL HR +GLGIMGFQD L+ + I Y+S EA++FAD+S E++ YYA
Sbjct: 720 VIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEFADKSSELVAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ LA+E+G YSSY GS WD+G LP D+++LL++ RG + + ++ S +W +R
Sbjct: 780 ILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDTSCRKDWTPVREA 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
IK +GMRNS+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+ +LK+
Sbjct: 840 IKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLISKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD+ M+ +LKYFDG+L +I RIPDDL+KI+ TAFEI P W+IE S RQKWID QS
Sbjct: 900 LGLWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKWIDMGQS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y+S +GKKL Y AW +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 960 LNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINKRGIQPRWMKNKS 1019
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ ++ + K + + E CESCQ
Sbjct: 1020 ASTSIVVDRAKKTPVCSFE----EGCESCQ 1045
>gi|373852168|ref|ZP_09594968.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
bacterium TAV5]
gi|391231103|ref|ZP_10267309.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
bacterium TAV1]
gi|372474397|gb|EHP34407.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
bacterium TAV5]
gi|391220764|gb|EIP99184.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
bacterium TAV1]
Length = 1110
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/768 (52%), Positives = 524/768 (68%), Gaps = 22/768 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDI---PIKYKEYFSKFINKGIDNKLLNPK 57
+E+D +++ R+ + I +EV G +I + I ++ F K + G K +NP+
Sbjct: 346 IERDADFAKFAGRIQLTYIYEEVLGWDIVRDGIGKLKTFHQAAFKKHLAHGAAIKRINPR 405
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL----HIEGIRIEMPQFFFMRIAMGL 113
L +++L L+ AL P DL+ ++LG++ LYDRY + R+E PQ F+MR+AMGL
Sbjct: 406 LLDYDLEKLAAALDPSADLELDFLGIQTLYDRYLIVDKTQKPSRRLETPQLFWMRVAMGL 465
Query: 114 SLNESN-----REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGI 168
LN+ + RE+ + Y L S F STPTLFNSGT+ SQLSSCYL V D L GI
Sbjct: 466 FLNDGDEKTGQREQRIVSLYELYKSRRFCSSTPTLFNSGTLHSQLSSCYLYYVDDSLEGI 525
Query: 169 -FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG 227
+ I ENA LSK+AGGLG WT VR G+ I GTNG SQGVIPFLK+ ND AVNQGG
Sbjct: 526 MYRGIAENAQLSKWAGGLGGSWTAVRGTGAHIAGTNGESQGVIPFLKLHNDQLNAVNQGG 585
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLF 287
KRKG+ CAYLETWH DI EF+ELRKNTGDDRRRTHDMN A W+PDLFMKR+ + WTLF
Sbjct: 586 KRKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEAREHWTLF 645
Query: 288 SPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWIT 347
+ PDLH +G++FEE+Y+ YE + GKI ++I AL LW+K+LSMLFETGHPWIT
Sbjct: 646 RSNEAPDLHELYGRKFEEAYLRYEKLAEEGKIT-GQRIEALELWKKMLSMLFETGHPWIT 704
Query: 348 FKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKL 406
FKDACN+RSPQ HVG+IHSSNLCTEITLNTS +E VCNLGSI L H++ +G +D KL
Sbjct: 705 FKDACNLRSPQDHVGVIHSSNLCTEITLNTSNDETAVCNLGSIILETHLRPDGSIDHDKL 764
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
+ TIR A+R LDNVIDIN+Y K A+ SN RHRP+GLG+MG + L++ ++S EA++
Sbjct: 765 RDTIRTAVRALDNVIDINFYPTKPAETSNRRHRPIGLGVMGLANSLYLRGHAFASPEAVE 824
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
F D++ME I YYAY AS++LA E+G YS+Y GS WD+GILPQD++ LLE+ERG ++V
Sbjct: 825 FNDEAMEAIAYYAYEASSDLAAERGAYSTYKGSKWDRGILPQDTVDLLEQERGVP-VEVP 883
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
L+W LR +I + GMRNSN +AIAPTATISNI S IEPTY+NL +KSNLSGEF
Sbjct: 884 RGGKLDWTPLRAKIARQGMRNSNVLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEF 943
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
+N YLV++LK +GLW++ MI NLKYFDG L I IP DL++ Y TAF I W+I+A
Sbjct: 944 IVLNPYLVRDLKARGLWNQEMIDNLKYFDGELRDIDTIPADLKEKYRTAFGIDHKWVIDA 1003
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM- 705
+ RQKWIDQSQS+N+++ K L Y+ AW GLKTTYYLR++ A+ +K+ +
Sbjct: 1004 AARRQKWIDQSQSVNLWLETPDLKTLSHMYRHAWHVGLKTTYYLRTLGASNIEKATVSVK 1063
Query: 706 ----GIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G+ + + + C I + + + ECE+CQ
Sbjct: 1064 KEMRGVSPGVATATTSDAATQRTYTAEQKLACSIEA-MRNGGECEACQ 1110
>gi|254444373|ref|ZP_05057849.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Verrucomicrobiae bacterium DG1235]
gi|198258681|gb|EDY82989.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Verrucomicrobiae bacterium DG1235]
Length = 1062
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/758 (51%), Positives = 523/758 (68%), Gaps = 31/758 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDI-PIK--YKEYFSKFINKGIDNKLLNPK 57
+E+D +++ AR+ + + +E G +I + I IK +++ F +++ GI LNPK
Sbjct: 327 IEQDADFAKFAARIKLSYMYQETLGWDIVRDGIGAIKTFHQKKFKEYVRHGIMIGRLNPK 386
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL----HIEGIRIEMPQFFFMRIAMGL 113
L E++++ L+ L P DL+F+YLG++ LYDRY + + RIE PQFF+MR+AMGL
Sbjct: 387 LKEYDINKLAKQLDPSADLEFDYLGIQTLYDRYLIIDKTQKQQRRIETPQFFWMRVAMGL 446
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE-SI 172
E RE A Y L S F STPTLFN+GT SQLSSCYL V D + GI + I
Sbjct: 447 FHAEEERELKAKTLYKLYKSRRFCSSTPTLFNAGTCHSQLSSCYLYYVDDSIEGIMQRGI 506
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+NA LSK+AGGLG WT VR GS IKGTNG SQG++PFLK+ ND+ +AVNQGGKR+G+
Sbjct: 507 ADNAYLSKWAGGLGGSWTSVRGTGSYIKGTNGESQGIVPFLKLHNDLLIAVNQGGKRRGS 566
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH D+ +F+ELRKNTGDDRRR HDMN A WVPDLFMKR+ + W+ F +V
Sbjct: 567 GCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQMWSFFRTSEV 626
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH+ +G +FE+ Y YE + G+I K++ A+ +W+++LSM+FETGHPWITFKD C
Sbjct: 627 PDLHDSYGADFEKKYTEYEAKAAKGEI-WSKEVPAIEVWKRMLSMIFETGHPWITFKDPC 685
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIR 411
N+RSPQ H G++HSSNLCTEITLNTSK E VCNLGSI L H+ K+G +D KL++T++
Sbjct: 686 NVRSPQDHCGVVHSSNLCTEITLNTSKEETAVCNLGSIVLDQHLDKDGNIDHDKLRETVQ 745
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+R LDNVIDIN+Y + AK +N RHRP+GLGIMG Q+CL++ P++S+EA++F D+
Sbjct: 746 TAIRALDNVIDINFYPTEAAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQEAVEFNDEI 805
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
ME + YYA AS++LA E+G Y SY GS WD+G+LPQD++ LLEKERG + + V L
Sbjct: 806 MEAVAYYAIEASSDLAAERGTYKSYKGSKWDRGLLPQDTVDLLEKERGVE-VDVPRGGKL 864
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W +R ++ K GMRNSN +AIAPTATISNI G S IEP Y+NL +KSNLSGEF +N+
Sbjct: 865 DWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLSGEFIILNQ 924
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
+LV++LK +GLW+ M NLKYFDG L +I IP DL+ Y TAF + +W++ A + RQ
Sbjct: 925 HLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWLVLAAARRQ 984
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
KWIDQSQS+N+++++ K L Y+ AW GLKTTYYLR++ A+ +K+
Sbjct: 985 KWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKTTYYLRTLGASNIEKATV-------- 1036
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G K L+ I K E+ CESCQ
Sbjct: 1037 -------GAKKELRGIVGGKAAPPEPEV-----CESCQ 1062
>gi|294055009|ref|YP_003548667.1| ribonucleoside-diphosphate reductase subunit alpha [Coraliomargarita
akajimensis DSM 45221]
gi|293614342|gb|ADE54497.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
akajimensis DSM 45221]
Length = 1080
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/765 (51%), Positives = 523/765 (68%), Gaps = 27/765 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPI---KYKEYFSKFINKGIDNKLLNPK 57
+E+D +++ R+L+ I +EV +I + + ++ ++ + ++ + ++PK
Sbjct: 327 IERDADFARFAGRVLLSYIYEEVLDWDIVRDGVEQLKEAHRRGLKTYLKRAVEIERVHPK 386
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGI----RIEMPQFFFMRIAMGL 113
L E++L LS AL P DL F+YLG++ LYDRY + + R+E+PQFF++R+AMGL
Sbjct: 387 LLEYDLKRLSEALDPSADLDFDYLGVQTLYDRYLIVDKTAKKHRRLEVPQFFWIRVAMGL 446
Query: 114 SLNE-SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE-S 171
E +RE I YNL S F STPTLFNSGT+ SQLSSCYL V D + I
Sbjct: 447 FHAEKEDREGYVISLYNLYKSRRFCSSTPTLFNSGTLHSQLSSCYLYKVDDSIESIMHRG 506
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKG 231
I +NA LSK+AGGLG WT VR G IKGTNG SQGVIPFLK+ ND VAVNQGGKR+G
Sbjct: 507 IADNAFLSKWAGGLGGSWTAVRGTGGFIKGTNGESQGVIPFLKLHNDQLVAVNQGGKRRG 566
Query: 232 AICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291
+ CAYLETWH DI +F+ELRKNTGDDRRRTHDMN A W+PDLFMKR+ + WTLF +
Sbjct: 567 SGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDWTLFRSNE 626
Query: 292 VPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
PDLH+ +GK FE+ Y YE + G++ KK+ A+ LW+ +L M+FETGHPWITFKD
Sbjct: 627 TPDLHDLYGKAFEDRYCEYEAMAERGEL-FGKKVPAIELWKSMLRMIFETGHPWITFKDP 685
Query: 352 CNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTI 410
CN+RSPQ H G+IHSSNLCTEITLNTS E VCNLGS+ L H+ K+G LD KL++T+
Sbjct: 686 CNVRSPQDHAGVIHSSNLCTEITLNTSDEETAVCNLGSVVLDSHLDKDGNLDHEKLRETV 745
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
IA+R LDNVIDIN+Y + AK +N RHRP+GLG+MG Q+ L + I ++S+ A++F D+
Sbjct: 746 SIAVRALDNVIDINFYPTEAAKTANSRHRPIGLGVMGLQNALFVKDIAFASQAAVEFNDE 805
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
ME I YYAY AS++LA E G YS+Y GS WD+G++PQD+L +L+ ERG + + V +
Sbjct: 806 FMEAIAYYAYEASSDLAAEHGTYSTYKGSKWDRGLMPQDTLDMLQSERGEEVV-VPRAGK 864
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
++W LR +I K GMRNSN +AIAPTATISNI+G S IEPTY+NL +KSNLSG+F +N
Sbjct: 865 MDWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSGDFIVLN 924
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
+LV++LK +GLWD+ M+ LKYFDG L+ I IP DLR+ Y TAF I + I+A + R
Sbjct: 925 GHLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFIDAAARR 984
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSV 710
QKWIDQSQS+N++++ K L Y+ AW +GLKTTYYLR++ A SN E SV
Sbjct: 985 QKWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKTTYYLRTLGA-----SNIEKATVSV 1039
Query: 711 NLDEISIKGYNKNLQEIKNN------KKCLINSEINDVNECESCQ 749
+ ++G + K K C + + +N ECE+CQ
Sbjct: 1040 KKE---VRGRAGDATPAKKEYTDAEVKACSLEAMMNG-GECEACQ 1080
>gi|399576281|ref|ZP_10770038.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogranum
salarium B-1]
gi|399238992|gb|EJN59919.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogranum
salarium B-1]
Length = 808
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/754 (48%), Positives = 507/754 (67%), Gaps = 14/754 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP Y V AR + EV G+ D Y++ + +G+D LL+ ++A+
Sbjct: 64 IERDPAYKTVAARAFRERYEHEVLGE---YEDREQAYRDSLHGLVERGVDADLLDERMAD 120
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES- 118
++L L++AL+ +RD + +YL ++ LY RYFL +G R+E+PQ F+MR+AMG++L E
Sbjct: 121 YDLDALADALVLDRDDELDYLAMETLYQRYFLKTNDGERLELPQVFWMRVAMGVALREDP 180
Query: 119 -NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
RE A +FY++LS+ F+ STPTLF++GT QLSSCYL+TV DDL IF S E+A
Sbjct: 181 DEREAYAKEFYDVLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVADDLDDIFRSYHEHAK 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +R+ GS I+ T S G +PFLK+ NDV A+N+ GKR+GA AYL
Sbjct: 241 LSKWSGGLGNDWTNLRASGSLIESTGVESTGTVPFLKISNDVTAAINRSGKRRGAAAAYL 300
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+D +F++LR+NTGD+RRRTHDMN A W+PDLFMKRV WTLFSP +VPDLH+
Sbjct: 301 ECWHLDYPDFVDLRRNTGDERRRTHDMNTAAWIPDLFMKRVEADEAWTLFSPDEVPDLHS 360
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFEE Y YE + + G+++ + + A LWRK L+ LFETGHPWITFKD N+RSP
Sbjct: 361 TYGEEFEELYREYEQKAEAGELRQHRTVDAADLWRKTLTRLFETGHPWITFKDPSNVRSP 420
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN--GKLDPIKLKKTIRIAMR 415
Q H G+++SSNLCTEITLNTS E VCNLGS+NL H+++ +L T+ AMR
Sbjct: 421 QDHAGVVNSSNLCTEITLNTSDEETAVCNLGSVNLAKHVESDGDGFQRERLADTVETAMR 480
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNV+D+N+Y + A+ SN+RHRP+GLG+MGF + L ++P +S EA+ A + E++
Sbjct: 481 MLDNVVDLNFYPTENAERSNMRHRPIGLGVMGFHEALLKQRVPMASDEALTVASEIQELV 540
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A S+ LA E+G Y SYDGS WD+G+LPQD+L LLE ERG + + V+ E L+W
Sbjct: 541 AYHAILNSSRLAAERGSYESYDGSKWDRGLLPQDTLDLLEAERG-REIPVDSEERLDWDA 599
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R + GMRNSN +A+APTATIS I+G + SIEP Y NL++KSN+SG+FT +N +LV
Sbjct: 600 VREHVAAHGMRNSNTMAVAPTATISTIVGTTPSIEPIYSNLYVKSNMSGDFTVVNDHLVT 659
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+LK++GLW +KY DG++ Q+ IPDD+++++ AFEI P + + R WID
Sbjct: 660 DLKREGLWSAETRDRIKYHDGSIQQLDEIPDDVQELHRGAFEIDPRHQLRLTAQRGVWID 719
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
QSQS N++ + G LD+ YK AW GLKTTYYLR++ A+ +KS +M +
Sbjct: 720 QSQSHNVFFPSTDGSLLDDVYKTAWKLGLKTTYYLRTLGASQIEKSTLDMR----EYSDT 775
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+G + E + D CESCQ
Sbjct: 776 QTRGDSGVTDEESTESDACDLPSVEDPT-CESCQ 808
>gi|313117006|ref|YP_004038130.1| ribonucleoside-diphosphate reductase, alpha subunit
[Halogeometricum borinquense DSM 11551]
gi|448286416|ref|ZP_21477646.1| ribonucleoside-diphosphate reductase subunit alpha [Halogeometricum
borinquense DSM 11551]
gi|312294958|gb|ADQ68994.1| ribonucleoside-diphosphate reductase, alpha subunit
[Halogeometricum borinquense DSM 11551]
gi|445574688|gb|ELY29182.1| ribonucleoside-diphosphate reductase subunit alpha [Halogeometricum
borinquense DSM 11551]
Length = 845
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/713 (49%), Positives = 503/713 (70%), Gaps = 8/713 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQI---DIPIKYKEYFSKFINKGIDNKLLNPK 57
+E+DP Y V A + + V G+++ + D Y+E F+ + +G+D LL+ +
Sbjct: 64 IERDPAYKYVAADIHRRRYFRRVTGEQLSETADDDTATTYRETFAANLERGVDEDLLDER 123
Query: 58 L--AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL--HIEGIRIEMPQFFFMRIAMGL 113
L F++ L++AL+ ERD +F+Y+ + L RYF+ ++G +E+PQ F+MR+AMGL
Sbjct: 124 LLDGRFDIDELADALVLERDDKFDYIAMSTLTQRYFIKTEVDGDPLELPQAFWMRVAMGL 183
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++ E + + A++FY++LS F STPTLF+SGT QLSSCYL+TV DDL IF+S K
Sbjct: 184 AIEEDDPQARALEFYDVLSRLLFTPSTPTLFHSGTTHPQLSSCYLTTVEDDLEHIFDSYK 243
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+A LSK++GGLGNDWT +R+ G+ I+ T S G +PFLK+ NDV A+N+ GKR+GA
Sbjct: 244 HHAQLSKWSGGLGNDWTNLRAEGALIESTGVESTGTVPFLKISNDVTAAINRSGKRRGAA 303
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
C YLE WHMD F++LR+NTGD+RRRTHDMN A WVPDLFM+RV TWTLFSP +VP
Sbjct: 304 CGYLEAWHMDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMERVENDETWTLFSPDEVP 363
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+LH +G+EF E Y YE + + G+++ ++ + A LWR +L+ LFETGHPWITFKD CN
Sbjct: 364 ELHETYGEEFAELYREYEEKAEAGELRQYETVDAADLWRTMLTRLFETGHPWITFKDPCN 423
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+RSPQ HVG +HSSNLCTEITLNTS E VCNLGS+NL+ H+ + +LD L TI A
Sbjct: 424 VRSPQDHVGTVHSSNLCTEITLNTSAEEHAVCNLGSVNLSNHVADSELDREALADTIETA 483
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
RMLDNV+D+ +Y +A+YSN+RHRPVGLG+MGF D L + +S+EA++ A++ E
Sbjct: 484 TRMLDNVVDLCFYPTDEAEYSNMRHRPVGLGVMGFHDALMQVGTSMASEEAVEAANRWQE 543
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ Y+ S+ LA+E+G Y +++GS WD+GILP D++ LE ERG + + + SE+++W
Sbjct: 544 FVSYHTILNSSRLAKERGAYETFEGSKWDRGILPHDTVDRLEAERG-REIPTDRSETMDW 602
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
++R+ I + GMRNSN +AIAPTATIS I G + SIEP Y NL++KSN+SG+FT IN L
Sbjct: 603 DRVRDHIAEHGMRNSNTMAIAPTATISTINGTTPSIEPIYSNLYVKSNMSGDFTVINEQL 662
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK +GLWD+ M+ +K+FDG++ ++S IP+++R++Y +AFEI P + + R +W
Sbjct: 663 VDDLKAEGLWDDEMVDQIKFFDGSIQEVSAIPEEMRELYRSAFEIDPRHQLRLTAHRGQW 722
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
IDQS S N++ + G LD+ YK AW G+KTTYYLR++ A+ +KS +M
Sbjct: 723 IDQSISHNVFFPSTDGSLLDDVYKTAWRLGVKTTYYLRTLGASQIEKSTLDMA 775
>gi|448737945|ref|ZP_21719976.1| ribonucleoside-diphosphate reductase subunit alpha [Halococcus
thailandensis JCM 13552]
gi|445802529|gb|EMA52833.1| ribonucleoside-diphosphate reductase subunit alpha [Halococcus
thailandensis JCM 13552]
Length = 811
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/709 (50%), Positives = 491/709 (69%), Gaps = 4/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIP-IKYKEYFSKFINKGIDNKLLNPKLA 59
+E++P Y ++ A + + ++V G+E IP Y+E F I +G++ LL+ ++
Sbjct: 65 IEREPRYKRLAAAVFRHQHYRDVVGEEPGLEGIPETGYRETFRTGIERGVEENLLDERMG 124
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
EF+L L++ L P RD + Y+ + L RYFL I+ IE+PQ F+MR+AMG++L E +
Sbjct: 125 EFDLDALADHLDPARDDRLEYMAMTTLAQRYFLAIDDEPIELPQAFWMRVAMGIALAEPD 184
Query: 120 REKCAI--KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
E+ A +FY+ LS+ F+ STPTLF++GT QLSSCYL+TVPDDL GIF+S K +A
Sbjct: 185 DERLAHAKEFYDQLSTLRFVFSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDSYKAHAK 244
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT VR+ G+ I T S G +PFL + NDV A+N+ GKR+GA CAYL
Sbjct: 245 LSKWSGGLGNDWTNVRAAGARISSTGVESTGTVPFLNISNDVTAAINRSGKRRGAACAYL 304
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+D F++L++NTGD+RRRTH+MN A WVPDLFMKRV WTLFSP + PDLH
Sbjct: 305 EPWHLDFPAFLDLKRNTGDERRRTHEMNTAAWVPDLFMKRVENDEQWTLFSPDETPDLHG 364
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE Q G+I +++ A LWR +L+ LFETGHPW+TFKDACN+RSP
Sbjct: 365 TYGEEFEQRYCEYERQADEGEIDQYERRDATELWRTMLTRLFETGHPWLTFKDACNVRSP 424
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q H G+++SSNLCTEITLNTS E VCNLGS+NL H+ +D +L TI AMRML
Sbjct: 425 QDHTGVVNSSNLCTEITLNTSDEETAVCNLGSVNLARHVGEDGIDRERLADTIETAMRML 484
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+N+Y +A+ SN RHRPVGLG+MGF + L IP +S EAI FAD+ E Y
Sbjct: 485 DNVVDLNFYPTDRAERSNTRHRPVGLGMMGFHEALIEQDIPMASDEAIDFADRIAEFHSY 544
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S+ LA E+G Y SY+GS WD+ + PQD++ LLE ER + + ++++E L+W+ +R
Sbjct: 545 HAILNSSRLAAERGPYDSYEGSKWDRDLFPQDTVPLLEAER-DREIPIDVTERLDWEPVR 603
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+ + GMRNSN +AIAPTATIS I G + SIEP Y NL++KSN+SGEFT +N LV +L
Sbjct: 604 EHVAEHGMRNSNTMAIAPTATISTIAGTTPSIEPRYSNLYVKSNMSGEFTVVNDRLVADL 663
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
+ LW+E M+ +KY DG++ +I IP+ +R+ + AFEI P +E + R W+DQS
Sbjct: 664 DEHDLWNEEMLDRIKYHDGSIQEIREIPEAIRERHRGAFEIDPRHQLELAAHRGIWLDQS 723
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
QS+N++ + G LD+ Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 724 QSVNVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQFEKSTIDMA 772
>gi|448726714|ref|ZP_21709106.1| ribonucleoside-diphosphate reductase subunit alpha [Halococcus
morrhuae DSM 1307]
gi|445793760|gb|EMA44331.1| ribonucleoside-diphosphate reductase subunit alpha [Halococcus
morrhuae DSM 1307]
Length = 810
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/709 (49%), Positives = 490/709 (69%), Gaps = 4/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIP-IKYKEYFSKFINKGIDNKLLNPKLA 59
+E++P Y ++ A + + ++V G+E +P Y+E F I +GI+ LL+ ++
Sbjct: 65 IEREPRYKRLAAAVFRHQHYRDVTGEEPGPEGVPETGYRETFRAGIERGIEVDLLDERMG 124
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
EF+L L++ L P RD + ++ + L RYFL I+ IE+PQ F+MR+AMG++L E
Sbjct: 125 EFDLDALADHLDPARDDRLEHMAMTTLAQRYFLTIDDEPIELPQAFWMRVAMGIALAEPA 184
Query: 120 REKCAI--KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
E+ A +FY+ LS+ F+ STPTLF++GT QLSSCYL+TVPDDL GIF+S K +A
Sbjct: 185 DERLARAKEFYDQLSTLRFVFSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDSYKAHAK 244
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT VR+ G+ I T S G +PFL + NDV A+N+ GKR+GA CAYL
Sbjct: 245 LSKWSGGLGNDWTNVRAAGARISSTGVESTGTVPFLNISNDVTAAINRSGKRRGAACAYL 304
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+D F++L++NTGD+RRRTH+MN A WVPDLFMKRV WTLFSP PDLH
Sbjct: 305 EPWHLDFPAFLDLKRNTGDERRRTHEMNTAAWVPDLFMKRVENDERWTLFSPDATPDLHG 364
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE + G+I +++ A LWR +L+ LFETGHPW+TFKDACN+RSP
Sbjct: 365 TYGEEFEQRYREYERRADEGEIDQYERRDATELWRTMLTRLFETGHPWLTFKDACNVRSP 424
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q H G+++SSNLCTEITLNTS E VCNLGS+NL H+ +D +L TI AMRML
Sbjct: 425 QDHAGVVNSSNLCTEITLNTSDEETAVCNLGSVNLARHVDADGIDRERLADTIETAMRML 484
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+N+Y +A+ SN RHRP+GLG+MGF + L +IP +S EAI FAD+ E Y
Sbjct: 485 DNVVDLNFYPTDRAERSNTRHRPIGLGMMGFHEALIEQEIPMASAEAIDFADRITEFHSY 544
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S+ LA E+G Y SY+GS WD+ + PQD++ LLE ER + + ++++E L+W+ +R
Sbjct: 545 HAILNSSRLAAERGPYDSYEGSKWDRDLFPQDTVPLLEAER-DREIPIDVTERLDWEPVR 603
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+ + GMRNSN +AIAPTATIS I G + SIEP Y NL++KSN+SGEFT +N LV +L
Sbjct: 604 EHVAEHGMRNSNTMAIAPTATISTIAGTTPSIEPRYSNLYVKSNMSGEFTVVNDRLVADL 663
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
+ LWDE M+ +KY DG++ +I IP+ +R+ + AFEI P +E + R W+DQS
Sbjct: 664 DEHDLWDEEMLDRIKYHDGSIQEIDAIPEAIRERHRGAFEIDPRHQLELAAHRGIWLDQS 723
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
QS+N++ + G LD+ Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 724 QSVNVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQFEKSTIDMA 772
>gi|448341269|ref|ZP_21530231.1| ribonucleoside-diphosphate reductase subunit alpha [Natrinema gari
JCM 14663]
gi|445628316|gb|ELY81624.1| ribonucleoside-diphosphate reductase subunit alpha [Natrinema gari
JCM 14663]
Length = 812
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/708 (50%), Positives = 497/708 (70%), Gaps = 4/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P +V A + +E+ G+++ ++ Y+E F +++ ID +LL+ +L+E
Sbjct: 64 VEAEPRLKRVAAAVFRQRYYREILGEDLTGFELDRAYRETFVTNLHRAIDLELLDERLSE 123
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L L++ L ERD F Y+ ++ LY RYF E G R+E+PQ F+MR+AMGL++ E
Sbjct: 124 RFDLEDLADYLALERDQAFEYMAMETLYQRYFCKTEQNGDRLELPQAFWMRVAMGLAIEE 183
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ +K A +FY++LS F STPTLF+SG+ QLSSCYL+TV DDL IF+S K +A
Sbjct: 184 DDPQKRAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVQDDLENIFDSYKHHAQ 243
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +RS G+ I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 244 LSKWSGGLGNDWTNIRSAGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYL 303
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D F +L++NTGD+RRRT DMN A W+PDLFMKRV WTLFSP +VPDLH+
Sbjct: 304 ACWHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVENGEKWTLFSPDEVPDLHD 363
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G+ FEE Y YE Q + G+++ + ++ A LWRK+L+ LFETGHPW+TFKD CN+RSP
Sbjct: 364 LSGEAFEERYREYEQQAENGELRQYDRVDAADLWRKMLTRLFETGHPWLTFKDPCNVRSP 423
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG +HSSNLCTEITLNTS +E VCNLGS+N H+ NG+LD L +TI AMRML
Sbjct: 424 QDHVGTVHSSNLCTEITLNTSADEHAVCNLGSVNFATHVSNGELDREYLAETIETAMRML 483
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y +A+ SN+RHRP+GLG MGF D L + +P ++EA+ A++ E + Y
Sbjct: 484 DNVVDLCFYPTDEAERSNMRHRPIGLGTMGFHDALMQLGVPMDTEEAVAKANRWQEFVSY 543
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S++LA E+ Y SY+GS WD+G+LPQD++ LLE ERG + + + E+L+W +R
Sbjct: 544 HAILNSSKLAAERDPYPSYEGSKWDRGLLPQDTVDLLEDERG-REIPTDREETLDWASVR 602
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+++ GMRNSN +AIAPTAT+S I G + SIEP Y NL++KSN+SGEFT IN LV++L
Sbjct: 603 EHVEEHGMRNSNTMAIAPTATVSTINGTTPSIEPLYSNLYVKSNMSGEFTIINDQLVEDL 662
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
+ GLWDE M +KY DG++ +I IPD+L+++Y +AFEI P + + RQ WIDQS
Sbjct: 663 RGLGLWDEEMTDRIKYHDGSIQEIDAIPDELKRLYRSAFEIDPRHQLRLTAHRQTWIDQS 722
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N++ + G L + Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 723 VSHNVFFPSTDGSLLTDVYETAWELGLKTTYYLRTLGASQIEKSTLDM 770
>gi|409730728|ref|ZP_11272289.1| ribonucleoside-diphosphate reductase subunit alpha [Halococcus
hamelinensis 100A6]
gi|448723743|ref|ZP_21706259.1| ribonucleoside-diphosphate reductase subunit alpha [Halococcus
hamelinensis 100A6]
gi|445787282|gb|EMA38030.1| ribonucleoside-diphosphate reductase subunit alpha [Halococcus
hamelinensis 100A6]
Length = 810
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/757 (47%), Positives = 519/757 (68%), Gaps = 17/757 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P + ++ + +EV G+++ D+ Y++ F+ + + +D LL+ +L E
Sbjct: 63 VEREPAFKRIAGEVFRQRYYREVLGEDLTGFDLDRAYRDTFAANLERAVDLDLLDERLVE 122
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L L++ L RD +F Y+ + LY RYFL E G +E+PQ F+MRIAMGL++ E
Sbjct: 123 DFDLGDLADYLEIARDGKFEYMAMSTLYQRYFLKTEQNGEHLELPQAFWMRIAMGLAMEE 182
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ + A +FY++LS F STPTLF+SG+ QLSSCYL+TV DDL GIF++ K +A
Sbjct: 183 DDPQARAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVEDDLEGIFDAYKHHAQ 242
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +RS G+ I+ T S GVIPFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 243 LSKWSGGLGNDWTNLRSAGALIESTGVESTGVIPFLRISNDVTSAINRSGKRRGAACAYL 302
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D F +LR+NTGD+RRRT DMN A W+PDLFMKRV WTLFSP +V DLH+
Sbjct: 303 ACWHLDYPAFTDLRRNTGDERRRTPDMNTATWIPDLFMKRVENGERWTLFSPDEVDDLHD 362
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G FE+ Y YE + G+++ ++++ A LWR++L+ LFETGHPW+TFKD CNIRSP
Sbjct: 363 LTGSAFEQRYEEYERMAEDGELRQYEQMDAEDLWRQMLTRLFETGHPWLTFKDPCNIRSP 422
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG +HSSNLCTEITLNTS++E VCNLGSIN H+++G+LD L +T+ AMRML
Sbjct: 423 QDHVGTVHSSNLCTEITLNTSQDETAVCNLGSINYATHVRDGELDREYLAETVETAMRML 482
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y +A+ SN++HRPVGLG MGF D L +++P S+EAI+ A++ E + Y
Sbjct: 483 DNVVDLCFYPTDRAENSNVKHRPVGLGTMGFHDALMELEVPMDSEEAIEKANRWQEFVSY 542
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A Y S++LAEE+G Y SY+GS WD+G+LPQD++ LLE ERG + + + E+++W +R
Sbjct: 543 HAIYNSSKLAEERGAYESYEGSKWDRGLLPQDTVDLLEDERG-RTIPTDREETMDWYVVR 601
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
++ ++GMRNSN +AIAPTAT+S I G + SIEP Y NL++KSN+SG+FT IN LV +L
Sbjct: 602 EQVDEYGMRNSNTMAIAPTATVSTINGTTPSIEPLYSNLYVKSNMSGDFTIINDQLVSDL 661
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
K++ LWD+ MI +KY DG++ +I +PD+++++Y AFEI P ++ + RQ WIDQS
Sbjct: 662 KERDLWDQEMIDRIKYHDGSIQEIDAVPDEMKELYRGAFEIDPRHQLDLTAHRQTWIDQS 721
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-----IDSVNL 712
S N++ + G L + Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 722 VSHNVFFPSTDGSLLTDVYETAWRLGLKTTYYLRTLGASQIEKSTLDMSEYGKTQHRGGS 781
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+E++ G E ++++ C + CE+CQ
Sbjct: 782 EEVASDG---GRPESESDELCRVEDPT-----CEACQ 810
>gi|397773705|ref|YP_006541251.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrinema sp.
J7-2]
gi|397682798|gb|AFO57175.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrinema sp.
J7-2]
Length = 812
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/708 (50%), Positives = 497/708 (70%), Gaps = 4/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P +V A + +E+ G+++ ++ Y+E F +++ ID +LL+ +L+E
Sbjct: 64 VEAEPRLKRVAAAVFRQRYYREILGEDLTGFELDRAYRETFVTNLHRAIDLELLDERLSE 123
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L L++ L ERD F Y+ ++ LY RYF E G R+E+PQ F+MR+AMGL++ E
Sbjct: 124 RFDLEDLADYLALERDQAFEYMAMETLYQRYFCKTEQNGDRLELPQAFWMRVAMGLAIEE 183
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ +K A +FY++LS F STPTLF+SG+ QLSSCYL+TV DDL IF+S K +A
Sbjct: 184 DDPQKRAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVQDDLENIFDSYKHHAQ 243
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +RS G+ I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 244 LSKWSGGLGNDWTNIRSAGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYL 303
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D F +L++NTGD+RRRT DMN A W+PDLFMKRV WTLFSP +VP+LH+
Sbjct: 304 ACWHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVENGEKWTLFSPDEVPNLHD 363
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G+ FEE Y YE Q + G+++ + ++ A LWRK+L+ LFETGHPW+TFKD CN+RSP
Sbjct: 364 LSGEAFEERYREYEQQAENGELRQYDRVDAADLWRKMLTRLFETGHPWLTFKDPCNVRSP 423
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG +HSSNLCTEITLNTS +E VCNLGS+N H+ NG+LD L +TI AMRML
Sbjct: 424 QDHVGTVHSSNLCTEITLNTSADEHAVCNLGSVNFATHVSNGELDREYLAETIETAMRML 483
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y +A+ SN+RHRP+GLG MGF D L + +P ++EA+ A++ E + Y
Sbjct: 484 DNVVDLCFYPTDEAERSNMRHRPIGLGTMGFHDALMQLGVPMDTEEAVAKANRWQEFVSY 543
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S++LA E+ Y SY+GS WD+G+LPQD++ LLE ERG + + + E+L+W +R
Sbjct: 544 HAILNSSKLAAERDPYPSYEGSKWDRGLLPQDTVDLLEDERG-REIPTDREETLDWASVR 602
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+++ GMRNSN +AIAPTAT+S I G + SIEP Y NL++KSN+SGEFT IN LV++L
Sbjct: 603 EHVEEHGMRNSNTMAIAPTATVSTINGTTPSIEPLYSNLYVKSNMSGEFTIINDQLVEDL 662
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
+ GLWDE M +KY DG++ +I IPD+L+++Y +AFEI P + + RQ WIDQS
Sbjct: 663 RGLGLWDEEMTDRIKYHDGSIQEIDAIPDELKRLYRSAFEIDPRHQLRLTAHRQTWIDQS 722
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N++ + G L + Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 723 VSHNVFFPSTDGSLLTDVYETAWELGLKTTYYLRTLGASQIEKSTLDM 770
>gi|448360049|ref|ZP_21548692.1| ribonucleoside-diphosphate reductase subunit alpha [Natrialba
chahannaoensis JCM 10990]
gi|445640426|gb|ELY93514.1| ribonucleoside-diphosphate reductase subunit alpha [Natrialba
chahannaoensis JCM 10990]
Length = 816
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/754 (48%), Positives = 508/754 (67%), Gaps = 7/754 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKL-A 59
+E++P Y Q+ A + + + G+++ + Y+E F I + ++ LL+ +L
Sbjct: 65 IEREPAYKQIAAAVFRQRYYRNLLGEDLTGAALDHAYRETFVTNIERAVELDLLDERLLT 124
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L L+ AL ERD F Y+ ++ L RYFL E G +E+PQ F+MRIAMGL+L E
Sbjct: 125 RFDLEELATALEIERDEHFEYMAMETLSQRYFLKTEEHGEHLELPQAFWMRIAMGLALEE 184
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ ++ AI+FY++LSS F STPTLF+SG+ QLSSCYL+TV D L IF+S K +A
Sbjct: 185 DDPQQRAIEFYDVLSSLEFTPSTPTLFHSGSPHPQLSSCYLTTVQDSLENIFDSYKHHAQ 244
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +RS GS I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 245 LSKWSGGLGNDWTNLRSAGSLIESTGVESTGVVPFLRISNDVTSAINRSGKRRGAACAYL 304
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D F +L++NTGD+RRRT DMN A W+PDLFMKRV WTLFSP +VPDLH+
Sbjct: 305 ACWHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVDADEEWTLFSPDEVPDLHD 364
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G+ FEE Y YE Q + G ++ +++I A LWR +L+ LFETGHPW+TFKD CN+RSP
Sbjct: 365 LSGEAFEERYREYERQAENGDLRQYERIDAAELWRTMLTRLFETGHPWLTFKDPCNVRSP 424
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG +HSSNLCTEITLNTS +E VCNLGS+NL H+ +G+LD L TI AMRML
Sbjct: 425 QDHVGTVHSSNLCTEITLNTSADEHAVCNLGSVNLATHVSDGELDREHLADTIETAMRML 484
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y ++A+ SN+RHRP+GLG MGF D L + IP S +A++ A++ E + Y
Sbjct: 485 DNVVDLCFYPTEEAERSNMRHRPIGLGTMGFHDALMELGIPMHSADAVEAANRWQEFVSY 544
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S++LA E+G Y SY+GS WDQG+LPQD++ LLE ERG + + + ESL W +R
Sbjct: 545 HAILNSSKLASERGAYPSYEGSKWDQGLLPQDTVDLLEAERG-REIPTDREESLEWDVVR 603
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+ + GMRNSN +AIAPTAT+S I G + SIEP Y NL++KSN+SG+FT IN LV +L
Sbjct: 604 EHVAEHGMRNSNTMAIAPTATVSTINGTTPSIEPIYSNLYVKSNMSGDFTVINDKLVSDL 663
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
K + WD+ M+ LK+ DG++ +I IPDDL+++Y AFEI P + + RQ WIDQS
Sbjct: 664 KARDRWDDEMVDRLKFHDGSVQEIDSIPDDLQELYRGAFEIDPRHQLRLTAHRQTWIDQS 723
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI--DSVNLDEI 715
S N++ + G LD+ Y+ AW GLKTTYYLR++ A+ +KS +M + + D+
Sbjct: 724 VSHNVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTLDMAEYGKTQHRDDD 783
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + + E + ++D CE+CQ
Sbjct: 784 STGTLDDDNSETDDADSSDELCRVDDPT-CEACQ 816
>gi|289677033|ref|ZP_06497923.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. syringae FF5]
Length = 762
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/552 (64%), Positives = 438/552 (79%), Gaps = 7/552 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVTAGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWA 751
Query: 535 KLRNRIKKFGMR 546
+R R++K G+R
Sbjct: 752 PVRARVQK-GIR 762
>gi|171913277|ref|ZP_02928747.1| ribonucleotide-diphosphate reductase subunit alpha [Verrucomicrobium
spinosum DSM 4136]
Length = 1109
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/717 (52%), Positives = 495/717 (69%), Gaps = 11/717 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDI---PIKYKEYFSKFINKGIDNKLLNPK 57
M +D +++ AR+L+ I +EV G +I + I ++ F + + +G++ +N K
Sbjct: 351 MARDADFARFAARILLSYIYEEVLGWDIVRDGIGSLQTFHRRAFRRNLQRGVEIDRINAK 410
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL----HIEGIRIEMPQFFFMRIAMGL 113
L +F+L L++AL P D+ F+YLG+ LYDRY + R+E PQ F+MR+AMGL
Sbjct: 411 LLDFDLDKLADALDPAADMDFDYLGIHTLYDRYLIIDKKTKPAKRLETPQLFWMRVAMGL 470
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIF-ESI 172
+ E + + I Y + S F STPTLFNSGT+ SQLSSCYL V D++ I I
Sbjct: 471 FVREEDPTEKVIALYRMYKSRRFCSSTPTLFNSGTLHSQLSSCYLYKVDDNIESIMIRGI 530
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
ENA LSK+AGGLG WT VR GS IKGTNG SQGVIPFLK+ ND VAVNQGGKR+G+
Sbjct: 531 AENAFLSKWAGGLGGSWTAVRGTGSYIKGTNGESQGVIPFLKLHNDQLVAVNQGGKRRGS 590
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
CAYLETWH DI +F++LRKN GD+RRRTHDMN A WVPDLFMKR+ +S WTLF +
Sbjct: 591 GCAYLETWHNDIVDFLDLRKNVGDERRRTHDMNTANWVPDLFMKRMEARSHWTLFRANET 650
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
PDLH +G+ FE+ Y+ YE GK+ L K+I A+ LW+ +L +FETGHPWITFKD C
Sbjct: 651 PDLHELYGQAFEKRYLEYEAMAAEGKV-LGKQIPAIDLWKSMLKAIFETGHPWITFKDPC 709
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIR 411
N+RSPQ H G+IHSSNLCTEITLNTSK+E VCNLGS+ L H+ + G +D KL++T+R
Sbjct: 710 NVRSPQDHAGVIHSSNLCTEITLNTSKDETAVCNLGSVILENHLDEAGNIDHTKLRETVR 769
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDNVIDIN+Y AK +N RHRP+GLG+MG Q L+ +P++SKEA+ F D+
Sbjct: 770 MAVRALDNVIDINFYPTDAAKTANTRHRPIGLGVMGLQYSLYRKGLPFASKEAVDFNDEV 829
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
ME + YYAY AS++LA E G+YS+Y GS W +G+LPQD++ LLEKERG + V +
Sbjct: 830 MEAVAYYAYEASSDLAAELGKYSTYPGSKWSRGLLPQDTVDLLEKERGEP-VDVVRGGKM 888
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W +R +I K GMRNSN +AIAPTATISNI+G S IEP + N KSNL G + +N
Sbjct: 889 DWSPVREKIAKQGMRNSNVLAIAPTATISNIMGSSPCIEPLFTNNFTKSNLGGNYVVLNP 948
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLVK+LKK+ LW + LKYFDG L+ + IP DL++ YATAF + ++++A + RQ
Sbjct: 949 YLVKDLKKRDLWTNEVAERLKYFDGELAAMDEIPADLKRKYATAFSVDWAYVLDAAARRQ 1008
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
KWIDQSQS+N++ + + L Y+ AW +GLKTTYYLR+ A+ + S ++ D
Sbjct: 1009 KWIDQSQSVNLWCPDTDMRTLSHMYRAAWRKGLKTTYYLRTKGASSIEGSTTQVQTD 1065
>gi|257053404|ref|YP_003131237.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
utahensis DSM 12940]
gi|256692167|gb|ACV12504.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
utahensis DSM 12940]
Length = 815
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/707 (49%), Positives = 489/707 (69%), Gaps = 3/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E P Y +V AR+ EV G+++ ++ Y+ F + I +G+ LL+ +L +
Sbjct: 63 IEAKPAYKRVAARVFRQRYYHEVIGEDLTGTELDRAYRTIFRENIERGVATDLLDTRLVD 122
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES 118
F+L L+ L PERD F YL ++ LY RYFL +G +E+PQ F+MR+AMGL++ E
Sbjct: 123 RFDLDALAEYLAPERDEHFEYLAMETLYQRYFLRTNDGEHLELPQAFWMRVAMGLAVEED 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ A +FY++LS F STPTLF+SGT QLSSCYL+TVPDDL GIF++ K +A L
Sbjct: 183 DPNARAKEFYDVLSKLEFTPSTPTLFHSGTTHPQLSSCYLTTVPDDLEGIFDAYKHHAQL 242
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK++GGLGNDWT +R+ G+ I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 243 SKWSGGLGNDWTPLRAEGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYLA 302
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WH+D F++L++ TGD+RRRT DMN A W+PDLFM+RV +WTLFSP +V DLH
Sbjct: 303 IWHLDFPAFVDLKRATGDERRRTPDMNTAAWIPDLFMERVQAGESWTLFSPDEVGDLHEA 362
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
G+ F E Y YE + G I+ F+ + A LWR +L+ LFETGHPW+TFKD CNI SPQ
Sbjct: 363 TGEAFAEKYREYEQAAENGDIENFETVEAAELWRTLLTRLFETGHPWVTFKDPCNIGSPQ 422
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
H G I SSNLCTEITLNTS +E VCNLGS+N HM++G+LD L+ T+ AMRMLD
Sbjct: 423 DHEGTIRSSNLCTEITLNTSTDEHAVCNLGSVNFATHMRDGELDRDYLEDTVETAMRMLD 482
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NV+D+ +Y ++A+ SN+RHRPVGLG MGF + L + +P +S EA++ A++ E + Y+
Sbjct: 483 NVVDLCFYPTEEAEDSNMRHRPVGLGTMGFHEALMEIGVPMNSNEAVEKANRWQEFVAYH 542
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S+ELA E+G Y S++GS WD+ ILPQD++ LLE+ERG + + +E+L W +R
Sbjct: 543 AIRTSSELAGERGAYPSFEGSKWDRDILPQDTVDLLEEERG-REIPTERTETLEWDAVRK 601
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
I + GMRNSN +AIAPTAT+S I G +ASIEP Y NL++KSN+SG+FT +N +LV +L+
Sbjct: 602 SIAEHGMRNSNTMAIAPTATVSTINGTTASIEPQYSNLYVKSNMSGDFTIVNDHLVADLR 661
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++ LWD+ M +KY DG++ +I IP+DLR++Y AFEI P + + RQ WIDQS
Sbjct: 662 ERDLWDDEMRDRIKYHDGSIQEIEAIPEDLRELYRGAFEIDPRHQLRLTAHRQTWIDQSV 721
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N++ + G LD+ Y AW GLKTTYYLR++ A+ +KS ++
Sbjct: 722 SHNVFFPSTDGTLLDDIYTTAWELGLKTTYYLRTLGASQVEKSTLDL 768
>gi|389845522|ref|YP_006347761.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
mediterranei ATCC 33500]
gi|448616862|ref|ZP_21665572.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
mediterranei ATCC 33500]
gi|388242828|gb|AFK17774.1| ribonucleoside-diphosphate reductase alpha chain [Haloferax
mediterranei ATCC 33500]
gi|445751517|gb|EMA02954.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
mediterranei ATCC 33500]
Length = 821
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/763 (46%), Positives = 513/763 (67%), Gaps = 20/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+++DP Y + A + + +EV G + Y+E F + I G++ LL+ ++
Sbjct: 65 IDRDPSYDDLAANVFLQGYFEEVVGSRPDDENRDEVYRETFVENIRFGVETDLLDERMLI 124
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNE-- 117
++L L+ L +RD F+Y + LY RYFL + R+E+PQ F MR+AMG++L E
Sbjct: 125 YDLDDLAAELALDRDDLFDYTAVDTLYQRYFLRTADEERLELPQAFLMRVAMGIALREDV 184
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
++R++ A +FY+LLS+ F+ STPTLF++GT QLSSCYL+TV DDL IF+S K +A
Sbjct: 185 ADRQERAKEFYHLLSTLRFLFSTPTLFHAGTTHPQLSSCYLTTVEDDLDDIFDSYKAHAK 244
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +R+ GS I T S G +PFLK+ NDV A+N+ GKR+GA AYL
Sbjct: 245 LSKWSGGLGNDWTNIRAAGSLISSTGVESTGTVPFLKISNDVTSAINRSGKRRGAAAAYL 304
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D +F++L++NTGD+RRRTHDMN A WVPDLFMKRV +WTLFSP +VPDLH
Sbjct: 305 ACWHIDFPDFLDLKRNTGDERRRTHDMNTAAWVPDLFMKRVEADESWTLFSPDEVPDLHE 364
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G EFE Y YE + G+I F+++ A LWR +L+ LFETGHPWITFKD CN+RSP
Sbjct: 365 TYGSEFEARYEEYEQLAEEGEIDQFERVEAADLWRTMLTRLFETGHPWITFKDPCNVRSP 424
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPIKLKKTIRIAMR 415
Q HVG +HSSNLCTEITLNTS E VCNLGSINL+ H+ D KL +T AMR
Sbjct: 425 QDHVGTVHSSNLCTEITLNTSSEETAVCNLGSINLSQHVAADGDGFDREKLAETAETAMR 484
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNV+D+N+Y +A+ SN+RHRPVGLG+MGF D L + +P +S +A+ A + E++
Sbjct: 485 MLDNVVDLNFYPTDRAERSNMRHRPVGLGMMGFHDALVELGVPMASADAVDVASDAAELL 544
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A S++LA E+G Y +Y GS WD+G+LPQD++ +LE ERG + + ++ +E+L+W++
Sbjct: 545 AYHAILGSSKLAAERGTYETYAGSKWDRGLLPQDTVDMLEAERG-REIPLDRTETLDWER 603
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R + + GMRNSN +A+APTATIS I G + SIEP Y NL++KSN+SG+FT +N +LV
Sbjct: 604 VREHVAEHGMRNSNTMAVAPTATISTIAGTTPSIEPRYSNLYVKSNMSGDFTVVNEHLVS 663
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+L+ +GLWD M L Y DG+++ I IP+++R+++ AFEI P ++ + R WID
Sbjct: 664 DLEAEGLWDAQMRDLLTYHDGSVADIEAIPEEIRELHRGAFEIDPRHLLHLTAQRAVWID 723
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
QSQS N++ + G+ L+E Y+ AW GLKTTYYLR++ A+ +KS +D+ D+
Sbjct: 724 QSQSHNVFFPSTDGELLNEVYRTAWKLGLKTTYYLRTLGASQIEKST----LDTSEYDDT 779
Query: 716 SIKGY---------NKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ +K+ +E+ + + + D C++CQ
Sbjct: 780 QFRNSSATDDEDVPDKSPEEVADGGRSCDLPSVEDPT-CDACQ 821
>gi|448313914|ref|ZP_21503624.1| ribonucleoside-diphosphate reductase subunit alpha
[Natronolimnobius innermongolicus JCM 12255]
gi|445596891|gb|ELY50974.1| ribonucleoside-diphosphate reductase subunit alpha
[Natronolimnobius innermongolicus JCM 12255]
Length = 812
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/708 (50%), Positives = 495/708 (69%), Gaps = 4/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P +V A + +E+ +++ ++ Y+E F + + +D LL+ +L E
Sbjct: 64 VESEPTLKRVAAAVFRQRYYREILDEDLTGFELDRAYRETFVTNLQRAVDLNLLDERLTE 123
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L+ L++ L +RD QF Y+ ++ LY RYFL E G +E+PQ F+MR+AMGL++ E
Sbjct: 124 RFDLADLADYLELDRDRQFEYMAMETLYQRYFLKTEQNGEYLELPQAFWMRVAMGLAIEE 183
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ + A +FY++LSS F STPTLF+SG+ QLSSCYL+TV DDL IF+S K +A
Sbjct: 184 DDPQSRAKEFYDVLSSLEFTPSTPTLFHSGSTHPQLSSCYLTTVQDDLEDIFDSYKHHAQ 243
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +RS G+ I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 244 LSKWSGGLGNDWTNIRSAGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYL 303
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D EFI+L++NTGD+RRRT DMN A W+PDLFMKRV WTLFSP +VP+LH
Sbjct: 304 ACWHLDFPEFIDLKRNTGDERRRTPDMNTAAWIPDLFMKRVENGGEWTLFSPDEVPELHT 363
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G+ FEE Y YE Q GK++ + ++ A LWR++L+ LFETGHPW+TFKD CNIRSP
Sbjct: 364 LTGEAFEERYRDYEQQADGGKLRQYDRVDAEDLWRRMLTRLFETGHPWLTFKDPCNIRSP 423
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q H G +HSSNLCTEITLNT +E VCNLGS+NL H+ +G+LD L TI AMRML
Sbjct: 424 QDHAGTVHSSNLCTEITLNTDADEHAVCNLGSVNLATHISDGELDRKYLADTIETAMRML 483
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y +A+ SN+RHRP+GLGIMGF D L ++IP +++A++ A++ E + Y
Sbjct: 484 DNVVDLCFYPTDEAERSNMRHRPIGLGIMGFHDALMQLEIPMDAEKAVEKANRWQEFVSY 543
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S++LA E+ Y SY+GS WD+G+LPQD++ LE ERG + + + E+L+W +R
Sbjct: 544 HAILNSSKLAAERDPYPSYEGSKWDRGLLPQDTVDRLEDERG-REIPTDREETLDWYVVR 602
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
++K GMRNSN +AIAPTATIS I G + SIEP Y NL++KSN+SG+FT IN YLV++L
Sbjct: 603 EHVEKHGMRNSNTMAIAPTATISTINGTTPSIEPLYSNLYVKSNMSGDFTIINDYLVEDL 662
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
++ LWD+ ++ +KY DG++ +I IPD+L+++Y AFEI P I + RQ WIDQS
Sbjct: 663 QEAELWDDELVDRIKYHDGSVQEIDVIPDELKRLYRGAFEIDPRHQIRLTAHRQTWIDQS 722
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N++ + G L + Y+ AW GLKTTYYLR++ A+ +KS M
Sbjct: 723 VSHNVFFPSTDGSLLADVYETAWELGLKTTYYLRTLGASQIEKSTLNM 770
>gi|405945196|gb|EKC17202.1| Ribonucleoside-diphosphate reductase subunit alpha [Crassostrea
gigas]
Length = 957
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/775 (48%), Positives = 529/775 (68%), Gaps = 37/775 (4%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
ME+ Y AR+++ + K V ++ Y + F++++++G++ ++L K+ +
Sbjct: 194 MEEHYDYGYFGARIVLDQLYKGVLHCSFASQNLEKSYHKRFAEYVHQGVEEEILTEKMRD 253
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEG------IRIEMPQFFFMRIAMGLS 114
F+L LL+ AL+PERDL F+YLG+KILYDRY L + E+PQ+ +MR+AMGL+
Sbjct: 254 FDLELLAKALVPERDLLFDYLGVKILYDRYLLKTRNKDEQKKLIFELPQWMWMRVAMGLA 313
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E ++ A++FYN+LS+ + STPTLFNSGT QLSSCY++ V D L IF++ +
Sbjct: 314 MEEEDKNARALEFYNVLSNHYLISSTPTLFNSGTRFMQLSSCYINLVGDSLSEIFKNFSD 373
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
+A LSK+AGG+G DWT VR+ GS IKGTNG S G+IPF+K+ ND+A+AVNQGGKR+GA+
Sbjct: 374 DAQLSKWAGGIGTDWTGVRATGSVIKGTNGASSGIIPFIKIFNDIAIAVNQGGKRRGAMA 433
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLE WH+D EEF+EL+KNTGD+RRR HD++ AI+V DLFMKRV + W LFSP D
Sbjct: 434 AYLENWHLDTEEFLELKKNTGDERRRAHDIHPAIFVSDLFMKRVEEDGQWMLFSPDDARF 493
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH +GK FEE Y+ E + K + A LWRK+L+ML+ETGHPWITFKDA N+
Sbjct: 494 LHENYGKFFEEKYLELEKNPPINH----KVVRAKDLWRKMLTMLYETGHPWITFKDAINV 549
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQ HVG++HSSNLCTEITLNTS E VCNL S+NL+ +++GKLD ++ TI M
Sbjct: 550 RSPQDHVGMVHSSNLCTEITLNTSTEETAVCNLASLNLSRMVRDGKLDEKLMETTIATGM 609
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLD VIDIN+Y ++A+ +N+RHRPVGLG+MG+ D L + IPYSS + + FAD +ME+
Sbjct: 610 RMLDCVIDINFYPTEEARRANVRHRPVGLGVMGYHDALFKLGIPYSSDKQVDFADHTMEI 669
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A S++LA+EKG YS+Y+GS W +GILP D+L LLE+ RG K +++N + ++W
Sbjct: 670 ISYHAILTSSKLAKEKGAYSTYEGSKWSKGILPLDTLDLLEENRGQK-IEINRAYRMDWD 728
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
K+R I K GMRNSNC+AIAPTATI+NI GV +EP Y+N+++K NLSG F IN YL+
Sbjct: 729 KVRRHIAKHGMRNSNCMAIAPTATIANIAGVVPCVEPIYKNIYMKENLSGNFFIINNYLI 788
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
LK+ +W+ ++I +K DG++ I IPD L+ + FEI WII+A + R KWI
Sbjct: 789 DRLKEINVWNRNIIDEIKLADGSIMNIKEIPDHLKNEFREVFEIDQKWIIKAAAARSKWI 848
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD- 713
DQS S N++I +SGK++ + Y LAW G+KTTYYLRS + + K+ E G+D D
Sbjct: 849 DQSASTNLFIDTRSGKEISDIYFLAWKMGMKTTYYLRSRAVSQITKTVGE-GVDERQSDI 907
Query: 714 --------------EISIKGYNKN----LQEIK-NNKKCLINSEINDVNECESCQ 749
E + + +N N L +++ +K CL++ +CE+CQ
Sbjct: 908 LLEKEEELLTDEQREKNERPFNLNGAVPLTKVRQQSKSCLLSDP-----DCEACQ 957
>gi|322368526|ref|ZP_08043094.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
paucihalophilus DX253]
gi|320551810|gb|EFW93456.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
paucihalophilus DX253]
Length = 815
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/709 (49%), Positives = 494/709 (69%), Gaps = 4/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P + ++ A EV G+ ++ ++ +Y+ F + + + ++ L+ +L E
Sbjct: 64 VEREPAFKRIAAAAFRQGYYHEVIGENLRGYELDREYRATFIENLERAVEIGRLDERLPE 123
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L L++ L P+RD +F Y+ ++ L RYFL E G R+E+PQ F+MR+AMGL++ E
Sbjct: 124 RFDLDDLASYLEPDRDERFEYMAMETLAQRYFLKTEENGERLELPQAFWMRVAMGLAVEE 183
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ ++ A +FY++LS F STPTLF+SG+ QLSSCYL+TV DDL IF+S +A
Sbjct: 184 DDPQRRAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVSDDLEHIFDSYNHHAH 243
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +R+ G+ I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 244 LSKWSGGLGNDWTNLRASGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYL 303
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D FI+L++NTGD+RRRT DMN A W+PDLFMKRV WTLFSP +VPDLH+
Sbjct: 304 ACWHLDFPAFIDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEAGEEWTLFSPDEVPDLHD 363
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G+ F E Y YE Q + G+ + ++++ A LWRK L+ LFETGHPW+TFKD CN+RSP
Sbjct: 364 LSGEAFAEKYREYEKQAEAGEFRQYERVDAEELWRKTLTRLFETGHPWLTFKDPCNVRSP 423
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q H G +HSSNLCTEITLNTS++E VCNLGS+N H+ G+L+ L +TI AMRML
Sbjct: 424 QDHAGTVHSSNLCTEITLNTSEDEHAVCNLGSVNFATHVSGGELNHDHLAETIETAMRML 483
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y +A++SN++HRPVGLG MGF D L + IP S++AI+ A++ E + Y
Sbjct: 484 DNVVDLCFYPTDEAEHSNMQHRPVGLGTMGFHDALMELGIPMDSEDAIEKANRWQEFVSY 543
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A + S++LA E+G Y SY+GS WD+G+LPQD++ LE ERG + + E+L+W +R
Sbjct: 544 HAIHNSSKLAAERGTYPSYEGSKWDRGMLPQDTVDTLEAERG-REIPTEREETLDWYVVR 602
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+++ GMRNSN +AIAPTAT+S I G + SIEP Y NL++KSN+SGEFT +N +LV +L
Sbjct: 603 EHVEEHGMRNSNTMAIAPTATVSTINGTTPSIEPMYSNLYVKSNMSGEFTVVNDHLVDDL 662
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
K LWDE M+ +KY DG + +I +PDDL+++Y AFEI P + + RQ WIDQS
Sbjct: 663 KALELWDEEMVDRIKYHDGTIQEIDAVPDDLKELYRGAFEIDPRHQLRLTAHRQTWIDQS 722
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
S N++ + G LD+ YK AW GLKTTYYLR++ A+ +KS +M
Sbjct: 723 VSHNVFFPSTDGTLLDDVYKTAWRLGLKTTYYLRTLGASGIEKSTLDMA 771
>gi|289582311|ref|YP_003480777.1| ribonucleoside-diphosphate reductase subunit alpha [Natrialba
magadii ATCC 43099]
gi|448282268|ref|ZP_21473556.1| ribonucleoside-diphosphate reductase subunit alpha [Natrialba
magadii ATCC 43099]
gi|289531864|gb|ADD06215.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrialba
magadii ATCC 43099]
gi|445576619|gb|ELY31070.1| ribonucleoside-diphosphate reductase subunit alpha [Natrialba
magadii ATCC 43099]
Length = 836
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/709 (49%), Positives = 494/709 (69%), Gaps = 4/709 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y Q+ A + + V G+++ + Y++ F + + ++ LL+ +L E
Sbjct: 67 IEREPTYKQLAAAVFRQRYYRTVLGEDLTGAALETAYRDTFVTNLERAVELDLLDERLLE 126
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L L+ AL ERD QF Y+ ++ L RYFL E G +E+PQ F+MR+AMGL+L E
Sbjct: 127 RFDLEKLAAALELERDEQFEYMAMETLTQRYFLKTEENGEHLELPQAFWMRVAMGLALEE 186
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ ++ A++FY++LS+ F STPTLF+SG+ QLSSCYL+TV D L IF+S K +A
Sbjct: 187 DDPQQRALEFYDVLSALEFTPSTPTLFHSGSTHPQLSSCYLTTVQDSLENIFDSYKHHAQ 246
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +RS G+ I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 247 LSKWSGGLGNDWTNLRSAGALIESTGVESTGVVPFLRISNDVTSAINRSGKRRGAACAYL 306
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D F +L++NTGD+RRRT DMN A W+PDLFMKRV WTLFSP +VP+LH+
Sbjct: 307 ACWHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEADEEWTLFSPDEVPELHD 366
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G+ FEE Y YE Q G+++ ++++ A LWR +L+ LFETGHPW+TFKD CN+RSP
Sbjct: 367 LSGEAFEERYCEYERQADNGELRQYERVDAAELWRTMLTRLFETGHPWLTFKDPCNVRSP 426
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG +HSSNLCTEITLNTS +E VCNLGS+NL H+ +G+LD L TI AMRML
Sbjct: 427 QDHVGTVHSSNLCTEITLNTSADEHAVCNLGSVNLATHVSDGELDREHLADTIETAMRML 486
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y ++AK SN+RHRPVGLG MGF D L + IP S++A++ A++ E + Y
Sbjct: 487 DNVVDLCFYPTEEAKRSNMRHRPVGLGTMGFHDALMELGIPMDSEDAVEAANRWQEFVSY 546
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S++LA E+G Y SY+GS WD+G+LPQD++ LLE ER + + + E+L W +R
Sbjct: 547 HAILNSSKLAGERGAYPSYEGSKWDRGLLPQDTVDLLEDER-DREIPTDREETLEWATVR 605
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+ + GMRNSN +AIAPTAT+S I G + SIEP Y NL++KSN+SG+FT IN LV +L
Sbjct: 606 EHVAEHGMRNSNTMAIAPTATVSTINGTTPSIEPIYSNLYVKSNMSGDFTVINDKLVADL 665
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
K + WD+ M+ LK+ DG++ +I +PDDL+++Y AFEI P + + RQ WIDQS
Sbjct: 666 KARDRWDDEMVDRLKFHDGSVQEIDTVPDDLQELYRGAFEIDPRHQLRLTAHRQTWIDQS 725
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
S N++ + G LD+ Y+ AW GLKTTYYLR++ A+ +KS +MG
Sbjct: 726 VSHNVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTLDMG 774
>gi|300709534|ref|YP_003735348.1| ribonucleoside-diphosphate reductase subunit alpha [Halalkalicoccus
jeotgali B3]
gi|448297697|ref|ZP_21487740.1| ribonucleoside-diphosphate reductase subunit alpha [Halalkalicoccus
jeotgali B3]
gi|299123217|gb|ADJ13556.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus
jeotgali B3]
gi|445578567|gb|ELY32970.1| ribonucleoside-diphosphate reductase subunit alpha [Halalkalicoccus
jeotgali B3]
Length = 797
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/707 (50%), Positives = 498/707 (70%), Gaps = 5/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+++ P Y V AR+ +E G + D Y++ F I +G++ LL+ ++ E
Sbjct: 59 IDRVPEYRTVAARVFRRRYFEERVG--VAPDDHEAAYRDSFVASIERGVEADLLDERMGE 116
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES-- 118
++LS L+ AL P RD + +Y+ ++ L RYFL IE+PQ F+MR+AMG++L E+
Sbjct: 117 YDLSRLAEALEPTRDDRLDYMAMETLSQRYFLREGDEPIELPQTFWMRVAMGIALREAPE 176
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
REK A +FY+LLS+ F+ STPTLF++GT QLSSCYL+TVPDDL GIF++ KE+A L
Sbjct: 177 EREKYAKEFYDLLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEHAKL 236
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK++GGLGNDWT +R+ G+ I T S G +PFLK+ NDV A+N+ GKR+GA CAYLE
Sbjct: 237 SKWSGGLGNDWTPLRASGARISSTGVESTGTVPFLKIANDVTGAINRSGKRRGAACAYLE 296
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WHMD F++LR+NTGD+RRRTHDMN A WVPDLFMKRV W LFSP +VPDLH
Sbjct: 297 AWHMDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMKRVQNDEKWMLFSPEEVPDLHGT 356
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G+EFEE Y YE + + G++ +++ A LWR+ L+ LFETGHPWITFKD CN+RSPQ
Sbjct: 357 YGREFEERYEEYERRAEAGELDQYERCEAAELWRRTLTRLFETGHPWITFKDPCNVRSPQ 416
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
H G+I+SSNLCTEITLNTS+ E VCNLGS+NL+ H+ LD L +T+ AMRMLD
Sbjct: 417 DHAGVINSSNLCTEITLNTSEEETAVCNLGSVNLSRHVIEDGLDREALAETVNTAMRMLD 476
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
NV+D+N+Y +KA+ SN+RHRPVGLG MGF D L IP +S++A++FAD++ E++ Y+
Sbjct: 477 NVVDLNFYPTEKAERSNMRHRPVGLGTMGFHDALLEQDIPMNSEKAVEFADRTQELVSYH 536
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S+ELA E+G Y SY+GS WD+ + PQD++ +LE+ERG + + +++ E L+W ++R
Sbjct: 537 AILGSSELAAERGAYGSYEGSKWDRDLFPQDTVSILEEERG-REIPIDVEERLDWGRVRE 595
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+ + GMRNSN +A+APTATIS I G + SIEP Y NL++KSN+SG+FT IN +LV +L+
Sbjct: 596 HVSEHGMRNSNTMAVAPTATISTIAGTTPSIEPIYSNLYVKSNMSGDFTVINDHLVSDLR 655
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW + + + Y DG++ +I IP+D+ +++ AFEI P + + R WIDQ Q
Sbjct: 656 ERGLWTDEIRDRITYHDGSIQEIDAIPEDVTELHRGAFEIDPRHQLRLSAERATWIDQGQ 715
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N++ + G L Y+ AW GLKTTYYLR++ A+ +K+ +M
Sbjct: 716 SHNVFFPSTDGSLLAGVYETAWELGLKTTYYLRTLGASQVEKTTLDM 762
>gi|448407941|ref|ZP_21574136.1| ribonucleoside-diphosphate reductase subunit alpha [Halosimplex
carlsbadense 2-9-1]
gi|445675191|gb|ELZ27726.1| ribonucleoside-diphosphate reductase subunit alpha [Halosimplex
carlsbadense 2-9-1]
Length = 837
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/670 (50%), Positives = 477/670 (71%), Gaps = 3/670 (0%)
Query: 38 KEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGI 97
+E F I +G+ +++ +L ++L ++ A+ PERD +F+++ + L RYFL +G
Sbjct: 119 RESFVDGIERGVRADIVDERLLTYDLDEMAAAIRPERDERFDHIAVDTLAQRYFLDADGD 178
Query: 98 RIEMPQFFFMRIAMGLSLNE--SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSS 155
+E+PQ F+MR+AMG++L E +R A +FY LLS+ F+ S+PTLF++GT QL+S
Sbjct: 179 PLELPQAFWMRVAMGIALREPVDDRAAYAKEFYELLSTLRFVHSSPTLFHAGTTHPQLAS 238
Query: 156 CYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKV 215
CY++TVPDDL GIF++ K +A LSK++GGLG DWT VR+ GS I+ T S G +PFLK+
Sbjct: 239 CYVTTVPDDLEGIFDAYKSHAKLSKWSGGLGTDWTPVRASGSLIESTGVESTGTVPFLKI 298
Query: 216 VNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFM 275
NDV A+N+ GKR+GA CAY+E WH+D +F++L++NTGD+RRRTHDMN A WVPDLFM
Sbjct: 299 SNDVTAAINRSGKRRGAACAYMEPWHLDYPDFLDLKRNTGDERRRTHDMNTAAWVPDLFM 358
Query: 276 KRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKIL 335
KRV WTLFSP +VPDLH +G+EFE+ Y YE + + G+++ ++++ A LWR L
Sbjct: 359 KRVRADEQWTLFSPDEVPDLHEAYGEEFEQLYREYERKAEAGELRQYERVDAADLWRDTL 418
Query: 336 SMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH 395
+ LFETGHPWITFKDACN+RSPQ H G I SSNLCTEITLNTS +E VCNLGS+NL+ H
Sbjct: 419 TRLFETGHPWITFKDACNVRSPQDHAGTIRSSNLCTEITLNTSTDETAVCNLGSVNLSEH 478
Query: 396 MKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIM 455
+ + KL+ T+ AMRMLDNV+D+N+Y +++ SN+ HRP+GLG+MGF + L
Sbjct: 479 VDEDGIQREKLEATVETAMRMLDNVVDLNFYPTDRSEESNMTHRPIGLGMMGFHEALIDQ 538
Query: 456 KIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLE 515
+IP + +EA+ FAD+ E + Y A S++LA E+G Y SY+GS WD+G+LPQD++ LLE
Sbjct: 539 RIPMNGEEAVDFADEVTEFVAYNAVLTSSKLAAERGTYDSYEGSKWDRGLLPQDTVDLLE 598
Query: 516 KERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRN 575
ERG + + V E L+W+ +R + + GMRNSN +A+APTATIS I G SASIEP Y N
Sbjct: 599 DERG-REVGVTAEERLDWEHVREHVAEHGMRNSNTMAVAPTATISTIAGTSASIEPLYSN 657
Query: 576 LHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATA 635
L++KSN+SG+FT +N LV +L+ + LW + + +K+ DG++ +I IP++LR++Y TA
Sbjct: 658 LYVKSNMSGDFTVVNDDLVADLEGRDLWTDEVRDRIKFHDGSVQEIGEIPEELRELYRTA 717
Query: 636 FEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISA 695
FE+ P + + R WIDQSQS N++ G L + Y+ AW GLKTTYYLR++ A
Sbjct: 718 FEVDPRHQLRLSAARGVWIDQSQSHNVFFPETDGSLLADVYETAWDLGLKTTYYLRTLGA 777
Query: 696 NYAKKSNFEM 705
+ +KS +M
Sbjct: 778 SQFEKSTLDM 787
>gi|15791174|ref|NP_280998.1| ribonucleotide-diphosphate reductase alpha subunit [Halobacterium
sp. NRC-1]
gi|169236930|ref|YP_001690130.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
salinarum R1]
gi|10581792|gb|AAG20478.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
gi|167727996|emb|CAP14784.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
salinarum R1]
Length = 804
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/671 (50%), Positives = 473/671 (70%), Gaps = 4/671 (0%)
Query: 38 KEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEG 96
++ F I +G+D LL+ ++ +++L+ L++A+ P RD + +Y+ + L RYFL +
Sbjct: 100 RQAFRDGIQRGLDADLLDERMGDYDLNRLADAITPARDDRLDYMAMDTLRQRYFLREPDA 159
Query: 97 IRIEMPQFFFMRIAMGLSLNE--SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLS 154
E+PQ F+MR+AMG++L E ++RE+ AI+FY+ LS+ F+ STPTLF++GT +QLS
Sbjct: 160 DPFELPQPFWMRVAMGVALREDPADREEYAIEFYDALSTLRFVHSTPTLFHAGTTHAQLS 219
Query: 155 SCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLK 214
SCYL+TVPDDL GIF++ KE+A LSK++GGLGNDWT +R+ GS I+ T S G +PFLK
Sbjct: 220 SCYLTTVPDDLDGIFDAYKEHAKLSKWSGGLGNDWTPLRAAGSLIESTGVESTGTVPFLK 279
Query: 215 VVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLF 274
+ NDV A+N+ GKR+GA AYL WH+D F +LR+NTGD+RRRTHDMN A W+PDLF
Sbjct: 280 ISNDVTAAINRSGKRRGAAAAYLACWHLDFPAFCDLRRNTGDERRRTHDMNTAAWIPDLF 339
Query: 275 MKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKI 334
M+RV WTLFSP + DL+ +G +F E Y YE G I+ F+++ A LWR +
Sbjct: 340 MERVRADKQWTLFSPKETGDLYELYGSDFAERYREYEAMADDGDIQRFERVDATDLWRTM 399
Query: 335 LSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTL 394
L+ LFETGHPW+TFKD CN+RSPQ H G + SSNLCTEITLNTS+ E VCNLGS+NL
Sbjct: 400 LTRLFETGHPWLTFKDPCNVRSPQDHAGTVRSSNLCTEITLNTSEEETAVCNLGSVNLAR 459
Query: 395 HMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHI 454
H+ +G +D +L +T+ AMRMLDNV+D+N+Y + A+ SN+RHRPVGLG+MGF D L
Sbjct: 460 HLDDGDIDREQLSETVETAMRMLDNVVDLNFYPTENAERSNMRHRPVGLGVMGFHDALQQ 519
Query: 455 MKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLL 514
M++P +S +A+ AD E + Y+A AS +LA E+G Y SY+GS WD+ + PQD++ L
Sbjct: 520 MRVPMASDDALDRADALQEYVAYHAIGASADLAAERGTYESYEGSKWDRDVFPQDTVDRL 579
Query: 515 EKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYR 574
E ERG + + V E L+W +R R+ GMRNSN +A+APTATIS I G + SIEP Y
Sbjct: 580 ESERG-REIPVPREERLDWSDVRQRVATHGMRNSNTMAVAPTATISTIAGTTPSIEPVYS 638
Query: 575 NLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYAT 634
NL++KSN+SG+FT +N LV +L+++ LW E + L Y DG++ ++ +P+D++++Y T
Sbjct: 639 NLYVKSNMSGDFTVVNDRLVADLEERDLWTEELRDKLTYHDGSVQELDAVPEDVQELYRT 698
Query: 635 AFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
AFEI P + + R WIDQSQS+N++ G KL E Y+ AW GLKTTYYLR++
Sbjct: 699 AFEIDPRHQLRLAARRGVWIDQSQSVNVFFPETDGSKLSEVYQTAWELGLKTTYYLRTLG 758
Query: 695 ANYAKKSNFEM 705
A+ +K+ +M
Sbjct: 759 ASQIEKTTLDM 769
>gi|284043178|ref|YP_003393518.1| ribonucleoside-diphosphate reductase subunit alpha [Conexibacter
woesei DSM 14684]
gi|283947399|gb|ADB50143.1| ribonucleoside-diphosphate reductase, alpha subunit [Conexibacter
woesei DSM 14684]
Length = 1091
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/763 (47%), Positives = 504/763 (66%), Gaps = 22/763 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDI---PIKYKEYFSKFINKGIDNKLLNPK 57
+E+D +S+ R+L+ + +E +I + + ++ + G+ ++P
Sbjct: 337 VERDSDFSRFAGRILLSHVYEEALAWDIVRDGVGALKAAHERGLRALLEHGVAIGRIDPA 396
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL----HIEGIRIEMPQFFFMRIAMGL 113
L +++++ L+ AL P DL F++LGL+ LYDRY + E RIE PQ F+MR+AMG+
Sbjct: 397 LHDYDVARLAAALDPTADLDFDFLGLQTLYDRYLIVDKKAAEPRRIETPQLFWMRVAMGV 456
Query: 114 SL-----NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGI 168
L + + RE+ AI Y + F STPTLFN+GT SQLSSCYL + D L I
Sbjct: 457 CLTARDGDPAAREERAIDLYTMYKQRRFCSSTPTLFNAGTPHSQLSSCYLYKIEDTLSSI 516
Query: 169 F-ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG 227
I ENA+ SK+AGGLG WT VR GS I+ TNG SQGV+PFLK+ ND VAVNQGG
Sbjct: 517 VGRGIAENAMCSKWAGGLGGSWTAVRGTGSHIESTNGESQGVVPFLKMHNDQLVAVNQGG 576
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLF 287
KR G+ CAYLE WH DI EF+ELR+NTGD+RRRTHDMN A W+PDLFMKRV + WTLF
Sbjct: 577 KRAGSGCAYLEVWHNDIREFLELRRNTGDERRRTHDMNTANWIPDLFMKRVEAREQWTLF 636
Query: 288 SPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWIT 347
DVPDLH +G++FE Y YE + G++ ++I A+ LW+++L +LFETGHPWIT
Sbjct: 637 RSNDVPDLHETYGRDFEARYEAYEARVDAGELH-GERIPAIELWKQMLKLLFETGHPWIT 695
Query: 348 FKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKL 406
FKD CN+RSPQ H G++HSSNLCTEITLNT +E VCNLGS+ + H+ G++D KL
Sbjct: 696 FKDPCNVRSPQDHAGVVHSSNLCTEITLNTGPDETAVCNLGSVVIDQHLDAAGEIDHAKL 755
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
+ TIR+A+R LD+VID+N+Y + A+ +N RHRPVGLG+MG Q L+ + + S EA+
Sbjct: 756 RATIRVAVRALDDVIDVNFYPTEPARTANGRHRPVGLGVMGLQYALYRKGLAFGSPEALA 815
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
F D+ ME I +YAY AS++LA E+G Y SY GS WD+G+LPQD+L LLE+ERG + ++V
Sbjct: 816 FGDEMMEAIAFYAYEASSDLAAERGTYQSYAGSKWDRGLLPQDTLDLLEEERG-QPIEVE 874
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
++W LR +I GMRNSN +AIAPTATI+NI+G S IEP Y+NL KSNLSG+F
Sbjct: 875 RGGRMDWTPLRAKIAAQGMRNSNVLAIAPTATIANIMGTSPCIEPMYKNLFAKSNLSGDF 934
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
T +N +LV++LK G+W ++ LK +G+L Q+ +P LR +Y TAF+I P +I+A
Sbjct: 935 TILNPFLVRDLKAAGVWSGALAERLKVVEGDLEQVPEVPAALRALYRTAFQIEPERLIDA 994
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+ RQKWIDQSQSLN++++ K + Y+ AW GLKTTYYLR++ A+ +K+
Sbjct: 995 AARRQKWIDQSQSLNLFLAAPDLKAMSHMYRRAWHAGLKTTYYLRTLGASAIEKATVAAP 1054
Query: 707 IDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + + + + + + N E ECE+CQ
Sbjct: 1055 AAATVPAAAGMP-TAPDAEALACSIEAMRNGE-----ECEACQ 1091
>gi|345006419|ref|YP_004809272.1| ribonucleoside-diphosphate reductase subunit alpha [halophilic
archaeon DL31]
gi|344322045|gb|AEN06899.1| ribonucleoside-diphosphate reductase, alpha subunit [halophilic
archaeon DL31]
Length = 809
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/754 (48%), Positives = 497/754 (65%), Gaps = 12/754 (1%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
E+DP + AR+ + + V G++ D Y+ F+ I +G++ LL+ ++A++
Sbjct: 62 ERDPAHDDAAARIARWRHARTVTGEDGPLSDS--AYRGAFAAGIEEGVELDLLDERMADY 119
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE-- 117
+L L+ L PERD F Y+ + L RYFL +E+PQ F+MR+AMG++L E
Sbjct: 120 DLEALAVELRPERDEAFGYMAVSTLVQRYFLRSSEAEEPLELPQAFWMRVAMGVALAEEP 179
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
RE A++FY LSS F+ STPTLF++GT QLSSCYL+TV DDL IF+S K +A
Sbjct: 180 DEREARAVEFYEALSSLRFVHSTPTLFHAGTTHPQLSSCYLTTVQDDLEDIFDSYKAHAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT VR+ GS I+ T S GV+PFL + +DV A+N+ GKR+GA CAYL
Sbjct: 240 LSKWSGGLGNDWTNVRATGSLIESTGVESTGVVPFLNISDDVTGAINRSGKRRGAACAYL 299
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WHMD F++L++NTGD+RRRTHDMN A WVPDLFMKRV WTLFSP + PDLH
Sbjct: 300 AAWHMDFPAFLDLKRNTGDERRRTHDMNTAAWVPDLFMKRVRAGEQWTLFSPDETPDLHE 359
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G+EFE Y YE G+++ F ++ A LWR +L+ LFETGHPWITFKD CN+RSP
Sbjct: 360 ATGQEFERRYEAYEQAADDGELRQFDRVEAEALWRTMLTRLFETGHPWITFKDPCNVRSP 419
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG I+SSNLCTEITLNTS E VCNLGS+NL H+ LD L T+ AMRML
Sbjct: 420 QDHVGTINSSNLCTEITLNTSARETAVCNLGSVNLAEHVDGDDLDREALADTVETAMRML 479
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+N+Y ++A+ +N RHRPVGLG+MGF + L + +S+EA++ AD++ME + Y
Sbjct: 480 DNVVDLNFYPTERAERANTRHRPVGLGVMGFHEMLGQRGVAMASEEALEVADETMERVAY 539
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
A S++LA E+G Y SY+GS WD+G+LPQD++ LLE ERG + V++ E+L+W+++R
Sbjct: 540 RAILNSSKLAAERGSYDSYEGSKWDRGLLPQDTVSLLEAERGEP-VDVDVKETLDWERVR 598
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+ GMRNSN A+APTATIS I G + SIEP Y NL++KSN+SGEFT +N LV+EL
Sbjct: 599 EHVAAHGMRNSNTTAVAPTATISTIAGTTPSIEPRYSNLYVKSNMSGEFTVVNEQLVEEL 658
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
++ GLW + M+ +KY DG + +I IP L+ + AFEI P +E + R W+DQS
Sbjct: 659 EELGLWTDEMLDRIKYHDGAIQEIDAIPPALQARHRGAFEIDPRHQLELTARRAVWVDQS 718
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISI 717
QS N++ + G LD+ Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 719 QSHNVFFPSTDGTLLDDIYQRAWELGLKTTYYLRTLGASQFEKSTLDMAAYGRTQRRDDD 778
Query: 718 KGYNKNLQEIKNNKKCLINSEINDVNE--CESCQ 749
G + + + SE+ V + CE+CQ
Sbjct: 779 SGATDD---GSGDDEPTDGSELPSVEDPTCEACQ 809
>gi|448611339|ref|ZP_21661973.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
mucosum ATCC BAA-1512]
gi|445743771|gb|ELZ95252.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
mucosum ATCC BAA-1512]
Length = 825
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/724 (49%), Positives = 498/724 (68%), Gaps = 10/724 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+++DP Y + A + + +EV G Y++ F + I G++ LL+ ++
Sbjct: 65 IDRDPSYDSLAANVFLQGYFEEVVGSRPDDETRDDVYRDTFVENIRFGVETDLLDERMLI 124
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNE-- 117
++L L+ L +RD F+Y + LY RYFL + R+E+PQ F MR+AMG++L E
Sbjct: 125 YDLDDLAAELALDRDDLFDYTAVDTLYQRYFLRTADEERLELPQAFLMRVAMGIALREDV 184
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
++R++ A +FY+LLS+ F+ STPTLF++GT QLSSCYL+TV DDL IF+S K +A
Sbjct: 185 ADRQERAKEFYHLLSTLRFLFSTPTLFHAGTTHPQLSSCYLTTVEDDLDDIFDSYKAHAK 244
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +R+ GS I T S G +PFLK+ NDV A+N+ GKR+GA AYL
Sbjct: 245 LSKWSGGLGNDWTNIRAAGSLISSTGVESTGTVPFLKISNDVTSAINRSGKRRGAAAAYL 304
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WHMD +F++L++NTGD+RRRTHDMN A WVPDLFMKRV WTLFSP +VPDLH
Sbjct: 305 ACWHMDFPDFLDLKRNTGDERRRTHDMNTAAWVPDLFMKRVEADEAWTLFSPDEVPDLHE 364
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G EFEE Y YE G+I F+++ A LWR +L+ LFETGHPWITFKD CN+RSP
Sbjct: 365 TYGSEFEERYEEYERLADEGEIDQFERVEAADLWRTMLTRLFETGHPWITFKDPCNVRSP 424
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPIKLKKTIRIAMR 415
Q HVG +HSSNLCTEITLNTS E VCNLGSINL+ H+ D KL +T AMR
Sbjct: 425 QDHVGTVHSSNLCTEITLNTSSEETAVCNLGSINLSQHVAADGDGFDREKLAETAETAMR 484
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
MLDNV+D+N+Y +A+ SN+RHRPVGLG+MGF D L + +P +S +A+ A + E++
Sbjct: 485 MLDNVVDLNFYPTDRAERSNMRHRPVGLGMMGFHDALVELGVPMASADAVDVASDAAELL 544
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y+A S++LA E+G Y +Y+GS WD+G+LPQD++ +LE ERG + + ++ +E+L+W++
Sbjct: 545 AYHAILGSSKLAAERGTYETYEGSKWDRGLLPQDTVDMLEAERG-REIPIDRTETLDWER 603
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
+R + + GMRNSN +A+APTATIS I G + SIEP Y NL++KSN+SG+FT +N +LV
Sbjct: 604 VREHVAEHGMRNSNTMAVAPTATISTIAGTTPSIEPRYSNLYVKSNMSGDFTVVNEHLVS 663
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+L+ +GLWD M L Y DG+++ I IP+D+R+++ AFEI P ++ + R WID
Sbjct: 664 DLEAEGLWDAQMRDLLTYHDGSVTDIEAIPEDIRELHRGAFEIDPRHLLHLTAQRAVWID 723
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
QSQS N++ + G+ L+E Y+ AW GLKTTYYLR++ A+ +KS +D+ D+
Sbjct: 724 QSQSHNVFFPSTDGELLNEVYRTAWKLGLKTTYYLRTLGASQIEKST----LDTSEYDDT 779
Query: 716 SIKG 719
+G
Sbjct: 780 QFRG 783
>gi|448475864|ref|ZP_21603219.1| ribonucleoside-diphosphate reductase subunit alpha [Halorubrum
aidingense JCM 13560]
gi|445816082|gb|EMA65991.1| ribonucleoside-diphosphate reductase subunit alpha [Halorubrum
aidingense JCM 13560]
Length = 861
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/766 (46%), Positives = 495/766 (64%), Gaps = 49/766 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK--YKEYFSKFINKGIDNKLLNPKL 58
+E+DP Y AR+ + V G+ + Y+E F I++G+D LL+ ++
Sbjct: 62 IERDPAYDSAAARVARGDYVRRVTGERPPDGGEALAEAYRESFRAAIDRGLDAGLLDERM 121
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNE 117
E++L L+ A++PERD F+Y L L RY+L + E+PQ F+MR+AMG++L E
Sbjct: 122 GEYDLDRLAEAIVPERDELFDYTALDTLEQRYYLREADSEPFELPQVFWMRVAMGVALRE 181
Query: 118 --SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
S RE A +FY +LS+ F+ STPTLF++GT QLSSCYL+TVPDDL GIF++ KE+
Sbjct: 182 DRSEREARAEEFYEVLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEH 241
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A LSK++GGLGNDWT +R+ G+ + T S G +PFLK+ NDV A+N+ GKR+GA A
Sbjct: 242 AKLSKWSGGLGNDWTPLRADGALVSSTGVESTGTVPFLKIANDVTGAINRSGKRRGAAAA 301
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH+D FI+LR+NTGD+RRRTHDMN A WVPDL MKRV WTLFSP +VPDL
Sbjct: 302 YLEAWHLDFPAFIDLRRNTGDERRRTHDMNTAAWVPDLLMKRVENDEEWTLFSPDEVPDL 361
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H +G+EFE Y YE G+++ ++ + A LWR+ L+ LFETGHPWITFKD CN+R
Sbjct: 362 HGAYGEEFETLYEEYEEAAANGELRQYETVDASDLWRETLTRLFETGHPWITFKDPCNVR 421
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM------------------- 396
SPQ HVG+++SSNLCTEITLNTS++E VCNLGSINL HM
Sbjct: 422 SPQDHVGVVNSSNLCTEITLNTSEDETAVCNLGSINLARHMTFRGDAESHPAPDDVAVAA 481
Query: 397 ----KNGKLD-PIK--------------LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLR 437
++G+LD P+ T AMRMLDNV+D+N+Y +KA+ SN+R
Sbjct: 482 RSGTEDGRLDSPVNRGADGEAAELDAELFADTAETAMRMLDNVVDLNFYPTEKAERSNMR 541
Query: 438 HRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYD 497
HRP+GLG+MGF + L + ++P +S+ A+ FA ++ E++ Y+A S +LA E+G Y +++
Sbjct: 542 HRPIGLGMMGFHEALQLARVPMNSERALGFAGKAGELLGYHALDNSAKLAAERGAYETFE 601
Query: 498 GSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTA 557
GS WD+ +LPQD+L LL ERG + + V+ E+L+W +R+RI GMRNSN A+APTA
Sbjct: 602 GSKWDRDLLPQDTLDLLADERG-REVPVDREETLDWDAVRDRIADHGMRNSNTTAVAPTA 660
Query: 558 TISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGN 617
TIS I G SASIEP Y NL+++SN+SG+FT +N LV +LK +G W + LKY DG
Sbjct: 661 TISTIAGTSASIEPQYSNLYVRSNMSGDFTVVNERLVADLKAEGQWGSEALDRLKYRDGA 720
Query: 618 LSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYK 677
+ + +P L +Y AFEI P + + R WIDQSQS N++ + G L + Y+
Sbjct: 721 VGDLD-LPGSLSDLYRGAFEIDPRHQLRLTARRGAWIDQSQSHNVFFPSTDGSLLSDVYE 779
Query: 678 LAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKN 723
AW GLKTTYYLR++ A+ ++S +M D+ +G +N
Sbjct: 780 TAWELGLKTTYYLRTLGASSIEQSTLDMS----QYDDTQSRGGTRN 821
>gi|448339839|ref|ZP_21528848.1| ribonucleoside-diphosphate reductase subunit alpha [Natrinema
pallidum DSM 3751]
gi|445618765|gb|ELY72319.1| ribonucleoside-diphosphate reductase subunit alpha [Natrinema
pallidum DSM 3751]
Length = 811
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/708 (50%), Positives = 492/708 (69%), Gaps = 4/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E +P +V A + +E+ G+++ D+ Y+E F + + +D LL+ +L E
Sbjct: 64 IEIEPKLKRVAAGVFRQRYYREILGEDLTGFDLDRAYRETFVTNLQRAVDLDLLDERLRE 123
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE--GIRIEMPQFFFMRIAMGLSLNE 117
F+L L++ L +RD +F Y+ ++ LY RYF E G R+E+PQ F+MR+AMGL++ E
Sbjct: 124 RFDLDDLADYLELDRDRKFEYMAMETLYQRYFRKTEQNGDRLELPQAFWMRVAMGLAIEE 183
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ ++ A +FY++LS F STPTLF+SG+ QLSSCYL+TV DDL IFES K +A
Sbjct: 184 DDPQERAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVQDDLENIFESYKHHAQ 243
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLGNDWT +RS G+ I+ T S GV+PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 244 LSKWSGGLGNDWTNIRSAGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYL 303
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D FI+L++NTGD+RRRT DMN A WVPDLFMKRV WTLFSP +VPDLH+
Sbjct: 304 ACWHLDFPAFIDLKRNTGDERRRTPDMNTAAWVPDLFMKRVDNGEQWTLFSPDEVPDLHD 363
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G EFEE Y YE Q + G ++ ++++ A LWRK+L+ LFETGHPW+TFKD CN+RSP
Sbjct: 364 LSGIEFEERYREYETQAENGDLRQYERVDAEELWRKLLTRLFETGHPWLTFKDPCNVRSP 423
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG IHSSNLCTEITLNTS +E VCNLGS+N H+ +G+LD L +TI AMRML
Sbjct: 424 QDHVGTIHSSNLCTEITLNTSADEHAVCNLGSVNFATHVSDGELDREYLAETIETAMRML 483
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D +Y +A+ SN++HRPVGLG MGF D L + +P +S+EA++ A++ E + Y
Sbjct: 484 DNVVDRCFYPTDEAERSNMQHRPVGLGTMGFHDALMQLNVPMNSEEALEKANRWQEFVSY 543
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A S++LA E+ Y SY GS WD+G+ PQD++ LLE ERG + + E+L+W +R
Sbjct: 544 HAVLNSSKLAAEREPYPSYKGSKWDRGLFPQDTVDLLEDERG-REVPTEREETLDWDVVR 602
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+ + GMRNSN +AIAPTAT+S I G + SIEP Y NL++KSN+SGEFT IN LV +L
Sbjct: 603 EHVAEHGMRNSNTMAIAPTATVSTINGTTPSIEPLYSNLYVKSNMSGEFTIINDQLVDDL 662
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
++ GLWD ++ +KY DG++ +I IPD+L+++Y AFEI P + + RQ WIDQS
Sbjct: 663 REAGLWDTELVDRIKYHDGSIQEIDAIPDELKRLYRGAFEIDPRQQLRLTAHRQTWIDQS 722
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N++ + G L + Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 723 VSHNVFFPSTDGSLLTDVYETAWELGLKTTYYLRTLGASQIEKSTLDM 770
>gi|433639682|ref|YP_007285442.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Halovivax ruber XH-70]
gi|433291486|gb|AGB17309.1| ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent/ribonucleoside-diphosphate
reductase, alpha subunit [Halovivax ruber XH-70]
Length = 838
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/708 (47%), Positives = 486/708 (68%), Gaps = 4/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E+DP + + A + EV G+ + ++ Y+ F + + ++ +LL+ ++ +
Sbjct: 64 IERDPAFGHIAADVFRQRYYWEVIGERLTGFELDEAYRATFVANVERAVEAELLDDRMTD 123
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMGLSLNE 117
F+L L++ L ERD F+Y+ ++ L RYFL +G +E+PQ F+MR+AMGL+L E
Sbjct: 124 RFDLRALADYLAIERDEHFSYMAMETLSQRYFLKTASDGDHLELPQAFWMRVAMGLALEE 183
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+ + A++FY++LS+ F STPTLF+SGT QLSSCYL+TV DDL IFES K A
Sbjct: 184 DDPQARAMEFYDVLSNLEFTPSTPTLFHSGTTHPQLSSCYLTTVQDDLEHIFESYKHQAQ 243
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GGLG DWT +R+ G+ I+ T S G++PFL++ NDV A+N+ GKR+GA CAYL
Sbjct: 244 LSKWSGGLGTDWTNLRASGALIESTGVESTGIVPFLRIGNDVTAAINRSGKRRGAACAYL 303
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+D F++L++NTGD+RRRT DMN A W+PDLF++RV +WTLFSP + P+LH+
Sbjct: 304 ACWHLDFPAFLDLKRNTGDERRRTPDMNTAAWIPDLFVERVENGESWTLFSPDETPELHD 363
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
G FEE Y YE + + G+++ ++++ A LWR +L+ LFETGHPWITFKD CN+RSP
Sbjct: 364 LSGAAFEERYREYERRAENGQLRQYERVDAEELWRDLLTRLFETGHPWITFKDPCNLRSP 423
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417
Q HVG IHSSNLCTE+TLNTS +E VCNLGS+NL H+ +G+LD L TI AMRML
Sbjct: 424 QDHVGTIHSSNLCTEVTLNTSADEHAVCNLGSVNLATHIADGELDREHLAATIETAMRML 483
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DNV+D+ +Y +A +N RHRPVGLG+MGF D L +++P +++ A++ A++ E + Y
Sbjct: 484 DNVVDLCFYPTDQAARANSRHRPVGLGVMGFHDALMELEVPMNAEAAVEKANRWQEFVSY 543
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
+A + S LA E+ Y SY+GS WD+G+LPQD++ LE ERG + + + E+L+W +R
Sbjct: 544 HAIFNSARLAAERDTYESYEGSKWDRGLLPQDTVDRLEAERG-RPIPTDREETLDWSIVR 602
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+ + GMRNSN +A+APTATIS I G + SI+P Y NL++KSN+SG+FT +N +LV +L
Sbjct: 603 EHVAEHGMRNSNVMAVAPTATISTINGTTPSIQPIYSNLYVKSNMSGDFTVVNEHLVSDL 662
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
K + LWD MI +KY DG++ +I IP LR+ Y AFEI P + + RQ WIDQS
Sbjct: 663 KDRDLWDAEMIDRIKYHDGSVQEIDAIPSSLRERYRNAFEIDPRHQLRLTAHRQTWIDQS 722
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S ++ + G LD+ Y+ AW GLKTTYYLR++ A+ +KS +M
Sbjct: 723 VSHTVFFPSTDGTLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTLDM 770
>gi|448457854|ref|ZP_21595859.1| ribonucleoside-diphosphate reductase subunit alpha [Halorubrum
lipolyticum DSM 21995]
gi|445810155|gb|EMA60186.1| ribonucleoside-diphosphate reductase subunit alpha [Halorubrum
lipolyticum DSM 21995]
Length = 902
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/754 (46%), Positives = 481/754 (63%), Gaps = 50/754 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQID--IPIKYKEYFSKFINKGIDNKLLNPKL 58
+E+DP Y AR+ + V G+ + D + Y++ F I +G+D LL+ ++
Sbjct: 92 IERDPAYDAAAARVAREDYFRRVTGERPPEGDDALAAAYRDSFRGAIARGLDADLLDERM 151
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNE 117
E++L L++A+ P RD F+Y L L RY+L + E+PQ F+MR+AMG++L E
Sbjct: 152 GEYDLDRLADAIEPGRDALFDYTALDTLEQRYYLREADAEPFELPQVFWMRVAMGVALRE 211
Query: 118 SNREKCAIK--FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E+ A FY +LS+ F+ STPTLF++GT QLSSCYL+TVPDDL GIF++ KE+
Sbjct: 212 EESEREARAEEFYEVLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEH 271
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A LSK++GGLGNDWT +R+ G+ + T S G +PFLK+ NDV A+N+ GKR+GA A
Sbjct: 272 ATLSKWSGGLGNDWTPLRADGALVSSTGVESTGTVPFLKISNDVTGAINRSGKRRGAAAA 331
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH+D FI+LR+NTGD+RRRTHDMN A WVPDLFM+RV + WTLFSP +VPDL
Sbjct: 332 YLEAWHLDFPAFIDLRRNTGDERRRTHDMNTAAWVPDLFMERVEDDAEWTLFSPDEVPDL 391
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H +G+EFE Y YE + G+++ ++ + A LWR+ L+ LFETGHPWITFKD CN+R
Sbjct: 392 HGAYGEEFERLYEAYEEAAENGELRQYETVDASELWRETLTRLFETGHPWITFKDPCNVR 451
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM------------------- 396
SPQ HVG+++SSNLCTEITLNTS E VCNLGS+NL HM
Sbjct: 452 SPQDHVGVVNSSNLCTEITLNTSDEETAVCNLGSVNLARHMTFRGDAEAHPAPDDVAVAA 511
Query: 397 ------------------------KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAK 432
+LD T AMRMLDNV+D+N+Y +KA+
Sbjct: 512 RSGGDGSGNATETADPPLDLGADGDAAELDAELFADTAETAMRMLDNVVDLNFYPTEKAE 571
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
SN+RHRP+GLG+MGF + L + ++P +S+ A+ FA ++ E++ Y+A S +LA E+G
Sbjct: 572 RSNMRHRPIGLGMMGFHEALQLARVPMNSERALGFAGKAGELLGYHAIDNSAKLAAERGA 631
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y +++GS WD+ +LPQD+L LL ER + + V+ E+L+W +R RI GMRNSN A
Sbjct: 632 YETFEGSKWDRDLLPQDTLDLLADER-DREVPVDREETLDWDAVRERIADHGMRNSNTTA 690
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
+APTATIS I G S SIEP Y NL++KSN+SG+FT +N LV +LK +G W + LK
Sbjct: 691 VAPTATISTIAGTSPSIEPLYSNLYVKSNMSGDFTVVNERLVADLKAEGQWGAEALDRLK 750
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKL 672
Y DG + + +P DL +Y AFEI P + + R WIDQSQS N++ + G L
Sbjct: 751 YRDGAVGDLD-LPGDLSDLYRGAFEIDPRHQLRLTARRGAWIDQSQSHNVFFPSTDGSLL 809
Query: 673 DETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+ Y+ AW GLKTTYYLR++ A+ ++S +M
Sbjct: 810 ADVYETAWECGLKTTYYLRTLGASSIEQSTLDMA 843
>gi|448441671|ref|ZP_21589278.1| ribonucleoside-diphosphate reductase subunit alpha [Halorubrum
saccharovorum DSM 1137]
gi|445688707|gb|ELZ40958.1| ribonucleoside-diphosphate reductase subunit alpha [Halorubrum
saccharovorum DSM 1137]
Length = 870
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/753 (46%), Positives = 487/753 (64%), Gaps = 50/753 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIK--YKEYFSKFINKGIDNKLLNPKL 58
+E+DP Y AR+ + V G+ + D + Y++ F + I++G+D LL+ ++
Sbjct: 62 IERDPAYDAAAARVAREDYFRRVTGERPPEGDAALAATYRDSFREAIDRGLDADLLDERM 121
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSL-- 115
E++L L++A+ P RD F+Y L L RY+L + E+PQ F+MR+AMG++L
Sbjct: 122 GEYDLDRLADAIEPARDELFDYTALDTLEQRYYLREADAEPFELPQVFWMRVAMGVALRE 181
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
+ES R A +FY +LS+ F+ STPTLF++GT QLSSCYL+TVPDDL GIF++ KE+
Sbjct: 182 DESERAARAEEFYEVLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEH 241
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A LSK++GGLGNDWT +R+ G+ I T S G +PFLK+ NDV A+N+ GKR+GA A
Sbjct: 242 AKLSKWSGGLGNDWTPLRADGALISSTGVESTGTVPFLKISNDVTGAINRSGKRRGAAAA 301
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH+D FI+LR+NTGD+RRRTHDMN A WVPDLFMKRV WTLFSP +VP+L
Sbjct: 302 YLEAWHLDFPSFIDLRRNTGDERRRTHDMNTAAWVPDLFMKRVENDEKWTLFSPDEVPEL 361
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H +G+EFE Y YE + G+++ + + A LWR+ L+ LFETGHPWITFKD CN+R
Sbjct: 362 HGTYGEEFEALYEEYEEAAESGELRQHETVDASELWRETLTRLFETGHPWITFKDPCNVR 421
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM------------------- 396
SPQ HVG+++SSNLCTEITLNTS+ E VCNLGS+NL HM
Sbjct: 422 SPQDHVGVVNSSNLCTEITLNTSEEETAVCNLGSVNLARHMTFRGDAEAHPAPDDIGVAA 481
Query: 397 ------------------------KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAK 432
+ +LD T AMRMLDNV+D+N+Y KA+
Sbjct: 482 RSGGAELGDGSETADASPDLGVDGEAAELDAELFADTAETAMRMLDNVVDLNFYPTDKAE 541
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
SN RHRP+GLG+MGF + L + ++P +S+ A+ FA ++ E++ Y+A S +LA E+G
Sbjct: 542 RSNARHRPIGLGMMGFHEALQLARVPMNSERALGFAGRAGELLGYHAIDNSAKLAAERGA 601
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y +++GS WD+ +LPQD+L LL ERG + + V+ +E+L+W +R+RI + GMRNSN A
Sbjct: 602 YETFEGSKWDRDVLPQDTLDLLADERG-REVPVDRAETLDWDAVRDRIAEHGMRNSNTTA 660
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
+APTATIS I G S SIEP Y NL++KSN+SG+FT +N LV +LK +G W + LK
Sbjct: 661 VAPTATISTIAGTSPSIEPLYSNLYVKSNMSGDFTVVNERLVADLKAEGQWGAEALDRLK 720
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKL 672
Y DG + + +P +L +Y AFEI P + + R WIDQSQS N++ + G L
Sbjct: 721 YRDGAVGDLD-LPGELSDLYRGAFEIDPRHQLRLTARRGAWIDQSQSHNVFFPSTDGSLL 779
Query: 673 DETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
+ Y+ AW GLKTTYYLR++ A+ ++S +M
Sbjct: 780 TDVYETAWELGLKTTYYLRTLGASSIEQSTLDM 812
>gi|226945385|ref|YP_002800458.1| ribonucleoside-diphosphate reductase subunit alpha [Azotobacter
vinelandii DJ]
gi|226720312|gb|ACO79483.1| ribonucleoside-diphosphate reductase, alpha subunit precursor
[Azotobacter vinelandii DJ]
Length = 1338
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/527 (63%), Positives = 414/527 (78%), Gaps = 6/527 (1%)
Query: 223 VNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKS 282
+ GGKRKGA+CAYLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV +
Sbjct: 818 AHNGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDG 877
Query: 283 TWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETG 342
WTLFSP DV DLH+ G+ FEE Y YE T+ GKIKLFK I+A LWRK+LSMLFETG
Sbjct: 878 QWTLFSPSDVRDLHDLTGRAFEERYEYYEALTQYGKIKLFKTIAAKDLWRKMLSMLFETG 937
Query: 343 HPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLD 402
HPW+TFKD CN+RSPQQHVG++HSSNLCTEITLNTS +EI VCNLGSINL H+ +G+LD
Sbjct: 938 HPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSINLVNHINDGRLD 997
Query: 403 PIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSK 462
KL +T++ A+RMLDNVIDINYY+V A+ +N RHRPVGLGIMGFQD L++ I Y S+
Sbjct: 998 TEKLSRTVKTAVRMLDNVIDINYYSVDTARNANFRHRPVGLGIMGFQDALYLQHIAYGSE 1057
Query: 463 EAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKY 522
AI FAD+SME I YYA AS +LAEE+G YSS++GSLW +GILP DSL +L ++RG+KY
Sbjct: 1058 AAIAFADRSMEAISYYAIQASCDLAEERGAYSSFEGSLWSRGILPLDSLDILAEQRGTKY 1117
Query: 523 LKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNL 582
++V+ S +L+W LR R+KK GMRNSN +AIAPTATISNI+GVS SIEPTY+NL++KSNL
Sbjct: 1118 IEVDRSSTLDWAPLRERVKK-GMRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNL 1176
Query: 583 SGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNW 642
SGEFT IN YLV +LK + LWD M+ +LKY+DG++ QI RIP DL+ +YATAFE+ W
Sbjct: 1177 SGEFTVINPYLVHDLKARELWDGVMVNDLKYYDGSVQQIERIPTDLKALYATAFEVETKW 1236
Query: 643 IIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
I+EA S RQKWIDQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A A+KS
Sbjct: 1237 IVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSAEKST 1296
Query: 703 FEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G L+ +S +++L + + + D +CE+CQ
Sbjct: 1297 INTG----KLNAVS-SVIDESLSAAEPKPAPVPQACSIDNPDCEACQ 1338
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/230 (61%), Positives = 177/230 (76%), Gaps = 5/230 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G + ++ Y ++ KGI+ +LL+
Sbjct: 213 VEREPNYSYVTARLLMDTLRAEALGFLGVAESATHHEMADLYARALPVYVEKGIEFELLD 272
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
PKL EF+L L AL ERD QF YLGL+ LYDRYFLH +GIR E+PQ FFMR+AMGL++
Sbjct: 273 PKLREFDLVRLGAALDHERDQQFTYLGLQTLYDRYFLHKDGIRFELPQVFFMRVAMGLAI 332
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E +E+ AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 333 EEPQKEERAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYNAIHDN 392
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQ
Sbjct: 393 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQ 442
>gi|422605767|ref|ZP_16677780.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. mori str. 301020]
gi|330889422|gb|EGH22083.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. mori str. 301020]
Length = 706
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/493 (67%), Positives = 393/493 (79%), Gaps = 6/493 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELA 487
+ YYA AS +LA
Sbjct: 692 VSYYAIQASCDLA 704
>gi|345870009|ref|ZP_08821964.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiorhodococcus
drewsii AZ1]
gi|343922396|gb|EGV33098.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiorhodococcus
drewsii AZ1]
Length = 1355
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/547 (60%), Positives = 422/547 (77%), Gaps = 14/547 (2%)
Query: 213 LKVVND-----VAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIA 267
LKV D A V+ GGKRKGA+CAYLETWH+DIEEF++LRKNTGDDRRRTHDMN A
Sbjct: 813 LKVEGDETYMTAAALVHNGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTA 872
Query: 268 IWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISA 327
WVPDLFMKRV ++ WTLFSP + PDLH+ G++FE++Y+ YE + + G++K+ K+I A
Sbjct: 873 NWVPDLFMKRVAEEQHWTLFSPDETPDLHDLMGQDFEQAYLAYEARAERGEMKVSKRIKA 932
Query: 328 LYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNL 387
+ LWRK+L+MLFETGHPWI FKD CN+R QHVG++HSSNLCTEITL+T+ EI VCNL
Sbjct: 933 VDLWRKMLAMLFETGHPWIAFKDPCNLRYTNQHVGVVHSSNLCTEITLHTNDLEIAVCNL 992
Query: 388 GSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMG 447
GSINL H+ + LD +L+KT+R AMRMLDNVI+ N+Y V +A+ SNLRHRPVGLGIMG
Sbjct: 993 GSINLAAHVTDKGLDTKRLQKTVRTAMRMLDNVIEYNFYNVPQARKSNLRHRPVGLGIMG 1052
Query: 448 FQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILP 507
FQD L+ +++PYSS EA++FADQSME + YYA AS+ELA E+GRY S++GSLW QGILP
Sbjct: 1053 FQDALYRLRLPYSSLEAVQFADQSMEYLSYYAIEASSELAGERGRYQSFEGSLWSQGILP 1112
Query: 508 QDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSA 567
DS+K LE+ RG YL+++ +L+W LR R++ GMRNSNC+AIAPTATISNI+GVS
Sbjct: 1113 IDSIKRLEEGRGG-YLQMDTGTTLDWDSLRERVRSVGMRNSNCMAIAPTATISNIVGVSQ 1171
Query: 568 SIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDD 627
SIEPTY+NL++KSNLSGEFT +N +LV +LK++GLWD M+ +LKY+DG++ QI RIPD+
Sbjct: 1172 SIEPTYQNLYVKSNLSGEFTVVNPFLVADLKERGLWDSVMVNDLKYYDGSVQQIDRIPDE 1231
Query: 628 LRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTT 687
++K YATAFE+ W+IEAGS RQKW+DQ+QSLN+Y+ SGKKLD YKLAW+RGLKTT
Sbjct: 1232 IKKRYATAFEVDARWLIEAGSRRQKWLDQAQSLNLYMQEPSGKKLDNLYKLAWVRGLKTT 1291
Query: 688 YYLRSISANYAKKSNFEMGIDSVNLDEISIKG-----YNKNLQEIKNNKKCLINSEINDV 742
YYLRS+ A + +KS DS + +S G +K+ + K N ++
Sbjct: 1292 YYLRSMGATHVEKSTM---ADSNKANRLSAVGGSYIAMDKSTPDGKGNGAAAPSACSILD 1348
Query: 743 NECESCQ 749
ECE+CQ
Sbjct: 1349 PECEACQ 1355
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/232 (60%), Positives = 183/232 (78%), Gaps = 7/232 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YSQV ARLL+ +++E G Q D+ +Y +YF+ +I + D + L
Sbjct: 220 IEREPNYSQVAARLLLDILRREALGFLDMAAGVETQADLAERYSDYFAAYIKRAGDLEHL 279
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGL 113
+ +LA ++L L AL PERDLQF YLGL+ LYDRYF+H EGIR E+PQ FFMR+AMGL
Sbjct: 280 DHQLARYDLKRLGAALKPERDLQFTYLGLQTLYDRYFIHTAEGIRFELPQAFFMRVAMGL 339
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE +RE+ AI+FY LLSSF+FMCSTPTLFNSG++R QLSSC+L++VPDDL GI+ +IK
Sbjct: 340 AINEIDREERAIEFYELLSSFDFMCSTPTLFNSGSLRPQLSSCFLTSVPDDLDGIYSAIK 399
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
+NALLSK+AGGLGNDW++VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQ
Sbjct: 400 DNALLSKFAGGLGNDWSRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQ 451
>gi|390951360|ref|YP_006415119.1| ribonucleoside-diphosphate reductase subunit alpha [Thiocystis
violascens DSM 198]
gi|390427929|gb|AFL74994.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiocystis
violascens DSM 198]
Length = 1349
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/502 (63%), Positives = 405/502 (80%), Gaps = 9/502 (1%)
Query: 210 IPF---LKVVND-----VAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRT 261
+PF LKV D + AV+ GGKRKGA+CAYLETWH+DIEEF++LRKNTGDDRRRT
Sbjct: 801 VPFVFDLKVEGDHSYNTASFAVSNGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 860
Query: 262 HDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKL 321
HDMN A WVPDLFMKRV + WTLFSP + PDLH+ G+ FE++Y+ YE + + G++++
Sbjct: 861 HDMNTANWVPDLFMKRVAEDQPWTLFSPDETPDLHDLTGQAFEQAYLAYEARAERGEMRV 920
Query: 322 FKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNE 381
K++ A+ LWRK+L+MLFETGHPWI FKD CN+R QHVG +HSSNLCTEITL+ + +E
Sbjct: 921 SKRLKAVDLWRKMLAMLFETGHPWIAFKDPCNLRYTNQHVGAVHSSNLCTEITLHNNDSE 980
Query: 382 IGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPV 441
I VCNLGSINL H+ LD +L+KT+R AMRMLDNVID N+Y V +A+ SNLRHRPV
Sbjct: 981 IAVCNLGSINLAAHVTEKGLDTQRLRKTVRTAMRMLDNVIDYNFYNVPQARKSNLRHRPV 1040
Query: 442 GLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLW 501
GLGIMGFQD L+ ++IPY+S EA++FADQSME + YYA AS+ELA E+GRY S+DGSLW
Sbjct: 1041 GLGIMGFQDALYKVRIPYASPEAVQFADQSMEYLSYYAIQASSELAAERGRYQSFDGSLW 1100
Query: 502 DQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISN 561
QGILP DS++LLE+ RG YL+++ S++L+W LR R+K GMRNSNC+AIAPTATISN
Sbjct: 1101 SQGILPIDSIRLLEEGRGG-YLQMDSSQTLDWDSLRERVKTVGMRNSNCMAIAPTATISN 1159
Query: 562 IIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQI 621
I+GVS SIEPTY+NL +KSNLSGEFT +N YLV +LK++GLWD M+ +LKYFDG++ QI
Sbjct: 1160 IVGVSQSIEPTYQNLFVKSNLSGEFTVVNPYLVDDLKERGLWDSVMVNDLKYFDGSVQQI 1219
Query: 622 SRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWL 681
RIPD+L+++YATAFE+ W+IEAGS RQKW+DQ+QSLN+Y+ +GKKLD YKLAW+
Sbjct: 1220 ERIPDELKQLYATAFEVDARWLIEAGSRRQKWLDQAQSLNLYLREPNGKKLDNLYKLAWV 1279
Query: 682 RGLKTTYYLRSISANYAKKSNF 703
RGLKTTYYLRS+ A + +KS
Sbjct: 1280 RGLKTTYYLRSMGATHVEKSTM 1301
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/232 (61%), Positives = 183/232 (78%), Gaps = 7/232 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++P YSQV ARLL+ +++E G Q D+ +Y +YF+ +I + D + L
Sbjct: 215 IEQEPQYSQVAARLLLDLLRREALGFLGLADGVETQADLAERYSDYFAAYIKRAGDLEHL 274
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGL 113
+ +L F+L L AL PERDLQFNYLGL+ LYDRYF+H GIR E+PQ FFMR+AMGL
Sbjct: 275 DHQLGRFDLKRLGAALRPERDLQFNYLGLQTLYDRYFIHTANGIRFELPQAFFMRVAMGL 334
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE +RE+ AI+FY+LLSSF+FMCSTPTLFNSGT+R QLSSC+L+TVPDDL GI+ +IK
Sbjct: 335 AINEIDREERAIEFYDLLSSFDFMCSTPTLFNSGTLRPQLSSCFLTTVPDDLDGIYSAIK 394
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
+NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQ
Sbjct: 395 DNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQ 446
>gi|77165985|ref|YP_344510.1| ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
19707]
gi|254436379|ref|ZP_05049885.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Nitrosococcus oceani AFC27]
gi|76884299|gb|ABA58980.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
19707]
gi|207088069|gb|EDZ65342.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
[Nitrosococcus oceani AFC27]
Length = 1336
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/555 (60%), Positives = 414/555 (74%), Gaps = 19/555 (3%)
Query: 203 NGRSQGVIPF---LKVVND-----VAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNT 254
+ R +PF LKV D V+ GGKRKGA+CAYLETWH+DIEEF+ELRKNT
Sbjct: 793 SARDISPLPFVYDLKVEGDPSYMTTTALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNT 852
Query: 255 GDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQT 314
GDDRRRTHDMN A WVPDLFMKRV + WTLFSP + PDLH+ G+ FE +Y+ YE++
Sbjct: 853 GDDRRRTHDMNTANWVPDLFMKRVAEDGGWTLFSPDETPDLHDLVGQAFEAAYLGYEDKA 912
Query: 315 KLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEIT 374
G+IK FKK A+ LWRK+LSMLFETGHPWI FKD CN+RSPQQH G++HSSNLCTEIT
Sbjct: 913 SRGEIKNFKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEIT 972
Query: 375 LNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYS 434
LNTS +EI VCNLGSINL H+ L+ KL+KTI AMRMLDNVID NYY+V A+ S
Sbjct: 973 LNTSDDEIAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRS 1032
Query: 435 NLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYS 494
NLRHRPVGLG+MGFQD L+ +IPY+S+ A++FAD SME I YYA AS+ LA E+G Y
Sbjct: 1033 NLRHRPVGLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKASSNLAAERGSYH 1092
Query: 495 SYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIA 554
+++GSLW QG+LP DS+ LLE+ RGS Y + + S +L+W LR ++K GMRNSNC+AIA
Sbjct: 1093 TFEGSLWSQGLLPIDSISLLEESRGS-YFQQDRSHTLDWDSLREQVKTVGMRNSNCMAIA 1151
Query: 555 PTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYF 614
PTATISNI GVS SIEPTY+NL +KSNLSGEFT IN YLV++LK + LWDE M+ +LKYF
Sbjct: 1152 PTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKAQNLWDEVMVNDLKYF 1211
Query: 615 DGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDE 674
DG+ I RIP++L+ +YATAFEI P W++EA S RQKW+DQ+QSLN+Y++ +GKKLD
Sbjct: 1212 DGSAQPIDRIPEELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPNGKKLDN 1271
Query: 675 TYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCL 734
YKLAW+RGLKTTYYLRS+ A + +KS M D N GY +Q+ + + C
Sbjct: 1272 LYKLAWVRGLKTTYYLRSLGATHVEKST--MTSDQANKLNAVQSGY---IQKSEAPQACS 1326
Query: 735 INSEINDVNECESCQ 749
+ +CE+CQ
Sbjct: 1327 VQDP-----DCEACQ 1336
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/231 (60%), Positives = 182/231 (78%), Gaps = 6/231 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKE----VFGKEIK--QIDIPIKYKEYFSKFINKGIDNKLL 54
+EK+P YS TARLL+ +++E + G E Q ++ +Y EYF+ +I +G + +L+
Sbjct: 215 IEKEPNYSYTTARLLLDSLRREALSFIHGMETHATQQEMIERYPEYFAAYIRQGAEIQLI 274
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L +++L+ L AL PERD QF YLGL+ LYDRYF+H G R E+PQ FFMR+AMGL+
Sbjct: 275 DSRLTQYDLTRLGQALRPERDFQFTYLGLQTLYDRYFIHSGGTRFELPQAFFMRVAMGLA 334
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE RE+ AI+FY LLSSF+FM STPTLFNSG++R QLSSCYL+TVPDDL GI+ +IK+
Sbjct: 335 INEIEREERAIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVPDDLDGIYSAIKD 394
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
NALLSKYAGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQ
Sbjct: 395 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVTNDTAVAVNQ 445
>gi|344340337|ref|ZP_08771263.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiocapsa marina
5811]
gi|343799995|gb|EGV17943.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiocapsa marina
5811]
Length = 1369
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/548 (60%), Positives = 414/548 (75%), Gaps = 16/548 (2%)
Query: 213 LKVVND-----VAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIA 267
LKV D A V+ GGKRKGA+CAYLETWH+D+EEF++LRKNTGDDRRRTHDMN A
Sbjct: 827 LKVEGDETYMTAAALVHNGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 886
Query: 268 IWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISA 327
WVPDLFMKRV + WTLFSP + DLH+ G FE++Y+ YE + G +K+ K+I A
Sbjct: 887 NWVPDLFMKRVAEDGHWTLFSPDETSDLHDLTGLAFEQAYVGYEERASRGDLKVAKRIKA 946
Query: 328 LYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNL 387
+ LWRK+L+MLFETGHPWI FKD CN+R QHVG +HSSNLCTEITL+T+ EI VCNL
Sbjct: 947 VDLWRKMLAMLFETGHPWIAFKDPCNLRYTNQHVGTVHSSNLCTEITLHTNDLEIAVCNL 1006
Query: 388 GSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMG 447
GS+NL H+ LD +L+KT+ AMRMLDNVID N+Y V +A+ SNLRHRPVGLGIMG
Sbjct: 1007 GSVNLAAHVTEKGLDTKRLQKTVSTAMRMLDNVIDYNFYNVPQARNSNLRHRPVGLGIMG 1066
Query: 448 FQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILP 507
FQD L+ ++IPY+S EA++FAD SME YYA AST+LA+E+GRY S++GSLW +GILP
Sbjct: 1067 FQDALYRLRIPYASLEAVQFADHSMEAFSYYAIQASTDLAQERGRYQSFEGSLWSRGILP 1126
Query: 508 QDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSA 567
DS+KLL + RGS YL+++ +LNW LR R++ GMRNSNC+AIAPTATISNI+GVS
Sbjct: 1127 VDSIKLLAEARGS-YLQMDAGTTLNWDALRERVRTVGMRNSNCMAIAPTATISNIVGVSQ 1185
Query: 568 SIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDD 627
SIEPTY+NL +KSNLSGEFT +N YLV +LK++GLWD M+ +LKY+DG++ QI RIP+D
Sbjct: 1186 SIEPTYQNLFVKSNLSGEFTVVNPYLVVDLKERGLWDSVMVNDLKYYDGSIQQIDRIPED 1245
Query: 628 LRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTT 687
L+ +YATAFE+ W++EAGS RQKW+DQ+QSLN+Y+ SGKKLD YKLAW+RGLKTT
Sbjct: 1246 LKSLYATAFEVDARWLVEAGSRRQKWLDQAQSLNLYMREPSGKKLDNLYKLAWVRGLKTT 1305
Query: 688 YYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNK-NLQEIKNNKK-----CLINSEIND 741
YYLRS+ A + +KS + D+ + +S G N +L + K N K I D
Sbjct: 1306 YYLRSMGATHVEKSTMD---DAGKANRLSAVGGNYLSLDKSKGNGKGNGAAAPAACSILD 1362
Query: 742 VNECESCQ 749
ECE+CQ
Sbjct: 1363 -PECEACQ 1369
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/232 (62%), Positives = 182/232 (78%), Gaps = 7/232 (3%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EKDP YSQV ARLL+ +++E G Q D+ +Y +Y + +I + D + L
Sbjct: 234 IEKDPQYSQVAARLLLDVLRREALGFLGLAGGVETQADLAERYSDYLAAYIKRAADLEHL 293
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGL 113
+P+LA ++L+ L AL PERDLQF YLGL+ LYDRYF+H +GIR E+PQ FFMR+AMGL
Sbjct: 294 DPQLARYDLARLGAALKPERDLQFTYLGLQTLYDRYFIHTADGIRFELPQAFFMRVAMGL 353
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
++NE +RE AI+FY LLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GI+ +IK
Sbjct: 354 AINEIDRETRAIEFYELLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIYGAIK 413
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
+NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQ
Sbjct: 414 DNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQ 465
>gi|300113308|ref|YP_003759883.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosococcus
watsonii C-113]
gi|299539245|gb|ADJ27562.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosococcus
watsonii C-113]
Length = 1336
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/555 (60%), Positives = 412/555 (74%), Gaps = 19/555 (3%)
Query: 203 NGRSQGVIPF---LKVVND-----VAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNT 254
+ R+ +PF LKV D V+ GGKRKGA+CAYLETWH+DIEEF++LRKNT
Sbjct: 793 SARNISPLPFVYDLKVEGDPSYMTTTALVHNGGKRKGAVCAYLETWHIDIEEFLDLRKNT 852
Query: 255 GDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQT 314
GDDRRRTHDMN A WVPDLFMKRV + WTLFSP + PDLH+ G+ FE +Y+ YE +
Sbjct: 853 GDDRRRTHDMNTANWVPDLFMKRVAENGGWTLFSPDETPDLHDLVGQAFEAAYLGYEGKA 912
Query: 315 KLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEIT 374
G+IK FKK A+ LWRK+LSMLFETGHPWI FKD CN+RSPQQH G++HSSNLCTEIT
Sbjct: 913 SRGEIKNFKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEIT 972
Query: 375 LNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYS 434
LNTS +EI VCNLGSINL H+ L+ KL+KTI AMRMLDNVID NYY+V A+ S
Sbjct: 973 LNTSDDEIAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRS 1032
Query: 435 NLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYS 494
NLRHRPVGLG+MGFQD L+ +IPY+S+ A++FAD SME I YYA AS++LA E+G Y
Sbjct: 1033 NLRHRPVGLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKASSDLAAERGSYP 1092
Query: 495 SYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIA 554
++ SLW QGILP DS+ LLE+ RG Y + + S +L+W LR ++K GMRNSNC+AIA
Sbjct: 1093 TFKDSLWSQGILPIDSISLLEENRGG-YFQQDRSRTLDWDSLREQVKTVGMRNSNCMAIA 1151
Query: 555 PTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYF 614
PTATISNI GVS SIEPTY+NL +KSNLSGEFT IN YLV++LK + LWDE M+ +LKYF
Sbjct: 1152 PTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVRDLKAQNLWDEVMVNDLKYF 1211
Query: 615 DGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDE 674
DG+ I RIPD+L+ +YATAFEI P W++EA S RQKW+DQ+QSLN+Y++ SGKKLD
Sbjct: 1212 DGSAQPIDRIPDELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDN 1271
Query: 675 TYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCL 734
YKLAW+RGLKTTYYLRS+ A + +KS G + L+ + + +Q + + C
Sbjct: 1272 LYKLAWVRGLKTTYYLRSLGATHVEKSTMTSG-QANKLNAVQ----SSYIQTSEAPQACS 1326
Query: 735 INSEINDVNECESCQ 749
I +CE+CQ
Sbjct: 1327 ILDP-----DCEACQ 1336
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/231 (60%), Positives = 182/231 (78%), Gaps = 6/231 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKE----VFGKEIK--QIDIPIKYKEYFSKFINKGIDNKLL 54
+EK+P YS TARLL+ +++E + G E Q ++ +Y EYF+ +I +G + +L+
Sbjct: 214 IEKEPNYSYATARLLLDSLRREALSFIHGMETHATQQEMIERYPEYFAAYIRQGAEIQLI 273
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ +L +++L+ L AL PERD QF YLGL+ LYDRYF+H G R E+PQ FFMR+AMGL+
Sbjct: 274 DSRLTQYDLTRLGQALRPERDFQFTYLGLQTLYDRYFIHSGGTRFELPQAFFMRVAMGLA 333
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE RE+ AI+FY LLSSF+FM STPTLFNSG++R QLSSCYL+TVPDDL GI+ +IK+
Sbjct: 334 INEIEREERAIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVPDDLDGIYSAIKD 393
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
NALLSKYAGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQ
Sbjct: 394 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVTNDTAVAVNQ 444
>gi|386816898|ref|ZP_10104116.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiothrix nivea
DSM 5205]
gi|386421474|gb|EIJ35309.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiothrix nivea
DSM 5205]
Length = 1337
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/484 (63%), Positives = 389/484 (80%), Gaps = 1/484 (0%)
Query: 219 VAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRV 278
A V+ GGKRKGA+CAYLETWH+DIE+F+ELRKNTGD+RRRTHDMN A W+PDLFMKRV
Sbjct: 814 TAALVHNGGKRKGAVCAYLETWHIDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRV 873
Query: 279 IKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSML 338
++ WTLFSP D PDLH+ GK FE Y YE + G+IKL +K+ AL LWRK+L ML
Sbjct: 874 AEEGEWTLFSPDDAPDLHDLSGKAFEARYAEYEAKVARGEIKLHRKVKALTLWRKMLGML 933
Query: 339 FETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN 398
FETGHPWITFKD CN+R QH G++HSSNLCTEITL+T+ +EI VCNLGS+NL H+ +
Sbjct: 934 FETGHPWITFKDPCNVRYTNQHAGVVHSSNLCTEITLHTNDSEIAVCNLGSVNLPAHVVD 993
Query: 399 GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458
GKLD KL++T+ AMRMLDNVID NYY+V +A+ SNLRHRPVGLGIMGFQD L+ M +
Sbjct: 994 GKLDVAKLERTVTTAMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDALYKMNLA 1053
Query: 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518
Y+S EA++FAD+SME + Y+A AS+ +A E+GRY+SY+GSLW +GILP DSL++L + R
Sbjct: 1054 YASAEAVEFADKSMEAVSYFAIRASSNMAAERGRYASYEGSLWSKGILPIDSLEMLGEAR 1113
Query: 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHI 578
G +Y V+ +++L+W LRN IK+ GMRNSNC+AIAPTATISNI GVS SIEPTY+NL +
Sbjct: 1114 G-EYFIVDHTQTLDWDGLRNLIKQQGMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFV 1172
Query: 579 KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI 638
KSNLSGEFT IN YLV++LK+ +WDE M+ +LKYFDG++ + R+PD+++ YATAFEI
Sbjct: 1173 KSNLSGEFTVINPYLVEDLKRLDMWDEVMMNDLKYFDGSVQPLDRVPDEIKAKYATAFEI 1232
Query: 639 SPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYA 698
W++EA S RQKWIDQ QSLN+Y+ +G KLD YKLAW+RGLKTTYYLR++ A A
Sbjct: 1233 DARWLVEAASRRQKWIDQGQSLNLYMKEPNGTKLDNLYKLAWVRGLKTTYYLRTLGATGA 1292
Query: 699 KKSN 702
+K++
Sbjct: 1293 EKTS 1296
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 136/231 (58%), Positives = 175/231 (75%), Gaps = 6/231 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+++DP YS V AR+L+ +++EV E Q+++ Y E + I G+ + L
Sbjct: 212 IDRDPNYSHVAARMLLDSLRREVLSFLEGQPTEATQVEMVALYPEALKRTILTGVKVERL 271
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
L ++L L A+ PERDLQF YLGL+ LYDRYFLH EG R E+PQ FFMR+AMGL+
Sbjct: 272 ADDLKNYDLDKLGAAIKPERDLQFTYLGLQTLYDRYFLHHEGTRFELPQVFFMRVAMGLA 331
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE +RE+ AI+FYN+LSSF+FM STPTLFNSGT+R QLSSCYL+T+ DDL GI+ +IK+
Sbjct: 332 INEVDREERAIEFYNILSSFDFMSSTPTLFNSGTLRPQLSSCYLTTISDDLDGIYNAIKD 391
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
NALLSKYAGGLGNDW++VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQ
Sbjct: 392 NALLSKYAGGLGNDWSRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQ 442
>gi|222834322|gb|EEE72799.1| predicted protein [Populus trichocarpa]
Length = 403
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/404 (74%), Positives = 347/404 (85%), Gaps = 1/404 (0%)
Query: 168 IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG 227
I+ESIKENALLSK+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGG
Sbjct: 1 IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 60
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLF 287
KRKGA+C YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++K WTLF
Sbjct: 61 KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 120
Query: 288 SPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWIT 347
SP DV DLH+ FG FE++Y YE + G++KLFK+I A+ LWRK+LSMLFETGHPW+T
Sbjct: 121 SPSDVGDLHDLFGAAFEQAYKAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 180
Query: 348 FKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLK 407
FKD CN+RSPQQH G++HSSNLCTEITLNTS E VCNLGS+NL H+ +G +D KL+
Sbjct: 181 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 240
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
KTI AMRMLDNVIDINYYAV+KAK SNLRHRPVGLG+MGFQD L+ M+I Y+S A++F
Sbjct: 241 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 300
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
ADQSME ICYYAY+ASTELA+E+G+YSSY GSLWDQGILP D+L LLEK RG Y++V+
Sbjct: 301 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGG-YVEVDR 359
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEP 571
S L+W LR +I + GMRNSNCVAIAPTATISNI+GV ASIEP
Sbjct: 360 SSRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 403
>gi|422616742|ref|ZP_16685447.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. japonica str. M301072]
gi|330897025|gb|EGH28546.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. japonica str. M301072]
Length = 502
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/512 (60%), Positives = 387/512 (75%), Gaps = 25/512 (4%)
Query: 253 NTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYEN 312
NTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDLH+ GK F+E Y YE
Sbjct: 1 NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 60
Query: 313 QTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCT 371
T+ GKIKLFK I A LWRK+LSMLFETGHPW+TFKD CN+RSPQQHVG++HSSNLCT
Sbjct: 61 LTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 120
Query: 372 EITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKA 431
EITLNT+K+EI VCNLGSINL H+ +GKLD KLK+T+ +A+RMLDNVIDINYY+V +A
Sbjct: 121 EITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQA 180
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME + YYA AS +LA+E+G
Sbjct: 181 KNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERG 240
Query: 492 RYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCV 551
Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W +R R++K G+RNSN +
Sbjct: 241 AYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIM 299
Query: 552 AIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANL 611
AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV++LK +GLWD MI +L
Sbjct: 300 AIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 359
Query: 612 KYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKK 671
KY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWIDQ+QSLN+YI+ SGKK
Sbjct: 360 KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 419
Query: 672 LDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNK 731
LD TY++AW RGLKTTYYLR+++A +KS G L+ +S G+ + I +
Sbjct: 420 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG----KLNAVSSGGHGPDDSAITAPR 475
Query: 732 --------------KCLINSEINDVNECESCQ 749
C I D +CE+CQ
Sbjct: 476 PTEAAPAGPAPVPKACAI-----DEPDCEACQ 502
>gi|196229991|ref|ZP_03128855.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
flavus Ellin428]
gi|196226317|gb|EDY20823.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
flavus Ellin428]
Length = 791
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/580 (52%), Positives = 404/580 (69%), Gaps = 20/580 (3%)
Query: 11 TARLLMYCIQKEVFGKEIKQIDIPIK--YKEYFSKFINKGIDNKLLNPKLAEFNLSLLSN 68
AR+L+ I +E ++ +K +++ F ++I +GI L P+LAEF+L L+
Sbjct: 206 AARILLSYIYEETLPWKVADGPQALKEAHRKAFLEYIPRGIALGRLEPRLAEFDLKKLAT 265
Query: 69 ALLPERDLQFNYLGLKILYDRYFLHIEGI------RIEMPQFFFMRIAMGLSLNESNREK 122
AL P DLQF++LG++ LYDRY +H R+E PQ F+MR+AMGLS+ E RE+
Sbjct: 266 ALDPFADLQFDFLGIQTLYDRYLIHTHDSVTGRKQRMEAPQVFWMRVAMGLSVQEPEREE 325
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A +FY + S STPTLFN+GT+ QLSSCYL D + I E+ + + LSK+A
Sbjct: 326 RAGQFYGIYKSRRACSSTPTLFNAGTMHPQLSSCYLLYCGDSIEEITETWRRFSHLSKWA 385
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GGLG WT +R G+ I GTNG S GVIPFLKV ND+A+AVNQGGKR GA+C+YLE WH
Sbjct: 386 GGLGCSWTAIRGAGAHIHGTNGESSGVIPFLKVSNDIAIAVNQGGKRPGALCSYLELWHA 445
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKR--------VIKKSTWTLFSPYDVPD 294
DIE+F++LRK TGDDRRRTH+MN A W+PDLFMKR + K++TW+LF + PD
Sbjct: 446 DIEDFLDLRKETGDDRRRTHNMNTAHWIPDLFMKRLKAISDGTLTKEATWSLFRTSETPD 505
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L G+ FEE Y+ YE GK+ +K+ L LW+++L MLFETGHPW+TFKD CN+
Sbjct: 506 LPELSGRAFEERYLQYEALAAEGKL-WSRKVRVLALWKRMLEMLFETGHPWMTFKDPCNL 564
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIA 413
RSPQ H G+IH+SNLCTEITLNTS +E+ VCNL SINL H++ +G LD +L+ TI +
Sbjct: 565 RSPQDHTGVIHNSNLCTEITLNTSSDEVAVCNLASINLAAHLREDGALDHDRLRATITVL 624
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVIDIN+Y V A +NLRHRPVGLG+MG QD L+ I + + EA+ F D+++E
Sbjct: 625 MRMLDNVIDINFYPVDAAANANLRHRPVGLGLMGLQDALYDKGIAFDTPEAVAFNDEALE 684
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I YYAY AS++LA E+GRY +Y GS WD+G++P D+L LE++RG L V+ + L+W
Sbjct: 685 AIAYYAYEASSDLAAERGRYQTYAGSKWDRGLMPLDTLAHLEQQRGVP-LMVDRTSRLDW 743
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGV-SASIEPT 572
LR +I + GMRNSNC+AIAPTATISNI+G AS PT
Sbjct: 744 TALRQKIAQQGMRNSNCLAIAPTATISNILGARRASSRPT 783
>gi|406976497|gb|EKD98927.1| hypothetical protein ACD_23C00209G0001, partial [uncultured
bacterium]
Length = 444
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 284/428 (66%), Positives = 358/428 (83%), Gaps = 1/428 (0%)
Query: 275 MKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKI 334
M+RV++K TWTLFSP +VPDLH+ FG +FE++Y+ YE + G+IK K + A +WRK+
Sbjct: 1 MRRVMEKGTWTLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPAKTVQATDMWRKM 60
Query: 335 LSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTL 394
L+MLFETGHPWITFKDACN+RSPQQH G++HSSNLCTEITLNTS E VCNLGS+NL
Sbjct: 61 LTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQ 120
Query: 395 HMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHI 454
H+K+G++D KLKKTI +AMRMLDNVIDINYYAVKKA+ SNLRHRPVGLG+M FQD L+
Sbjct: 121 HLKDGQIDHDKLKKTITVAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMAFQDSLYE 180
Query: 455 MKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLL 514
++IPY+S+EA++FADQSME ICYYAY+ASTELA+E+G+YSSY GSLWD+G+LP D+L +L
Sbjct: 181 LRIPYASQEAVEFADQSMEAICYYAYWASTELAKERGKYSSYKGSLWDRGVLPFDTLDML 240
Query: 515 EKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYR 574
+ RG Y++V+ S +L+W LR +I K GMRNSNCVAIAPTATISNIIGV ASIEP++
Sbjct: 241 SEARGG-YVEVDRSSTLDWDALRKKIAKDGMRNSNCVAIAPTATISNIIGVDASIEPSFG 299
Query: 575 NLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYAT 634
NL +KSNLSGEFT IN LV++LK+ GLWD+ MI +LK+F G+L I R+P D++ +Y+T
Sbjct: 300 NLSVKSNLSGEFTVINGGLVRDLKRLGLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYST 359
Query: 635 AFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
AFE+ P W++EA S RQKWIDQ+QSLNIY++ SGKKLD+TYKLAW+RGLKTTYYLR+ S
Sbjct: 360 AFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTQS 419
Query: 695 ANYAKKSN 702
A + + S
Sbjct: 420 ATHVEMST 427
>gi|406939252|gb|EKD72310.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[uncultured bacterium]
Length = 646
Score = 627 bits (1616), Expect = e-176, Method: Compositional matrix adjust.
Identities = 284/444 (63%), Positives = 360/444 (81%), Gaps = 6/444 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA- 59
+EK+P YS V ARLL ++ E + + D +YF ++ GI +LL+P+L
Sbjct: 208 IEKEPNYSYVAARLLSNTLRDEAYAFLDVKDDT-----QYFKAYLQHGIKAELLDPRLMR 262
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
+F+L+ L NA+ ER+LQF YLGL+ L+DRYF+H +G+R E+PQ FFMR+AMGL++ E N
Sbjct: 263 DFDLTQLQNAMQEERNLQFTYLGLQTLFDRYFIHFDGLRFELPQAFFMRVAMGLAIAEKN 322
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ + AI+FYN+LSSF+FM STPTLFN+GT+R QLSSC+L+TVPDDLYGI+ ++ NALLS
Sbjct: 323 KTERAIEFYNVLSSFDFMSSTPTLFNAGTLRPQLSSCFLTTVPDDLYGIYNAMTTNALLS 382
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGGLGNDWT VR++G+ IKGTNG+S GV+PFL V N AVAVNQGGKRKGA+CAYLET
Sbjct: 383 KFAGGLGNDWTNVRAMGAYIKGTNGKSLGVVPFLNVANATAVAVNQGGKRKGAVCAYLET 442
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DIE+F+ELRKNTGD+RRRTHDMN A WVPDLFM+RV + WTLFSP +VPDLH+++
Sbjct: 443 WHRDIEDFLELRKNTGDERRRTHDMNTANWVPDLFMERVFENQEWTLFSPDEVPDLHDRY 502
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
GK F +Y+ YE++ G++K KKI AL LWRK+LSMLFETGHPWITFKD CN+RSP+Q
Sbjct: 503 GKAFVAAYLAYEDKAARGQMKNVKKIPALVLWRKMLSMLFETGHPWITFKDPCNLRSPEQ 562
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G+IHSSNLCTEITLNTS++EI VCNLGSINL H+ N +LD KL++TIR A+RMLDN
Sbjct: 563 HAGVIHSSNLCTEITLNTSQDEIAVCNLGSINLPAHVINNQLDQEKLRRTIRTAVRMLDN 622
Query: 420 VIDINYYAVKKAKYSNLRHRPVGL 443
VIDINYYAV+ AK SN++HRP+G+
Sbjct: 623 VIDINYYAVQPAKNSNIKHRPIGM 646
>gi|410582855|ref|ZP_11319961.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thermaerobacter subterraneus DSM 13965]
gi|410505675|gb|EKP95184.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thermaerobacter subterraneus DSM 13965]
Length = 930
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/729 (41%), Positives = 460/729 (63%), Gaps = 18/729 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP + +V R + + ++V G+ + P +Y+ F +I +G+ L+ +L
Sbjct: 95 LHRDPEFERVAVRARLRQLYRQVLGEPVPG---PERYRAAFPAYIRRGVACGALDERLLA 151
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE- 117
F+L L+ AL PERD ++GL L DRY + R +E PQ+ FMR+AMGL+L E
Sbjct: 152 FDLDELAGALRPERDESLPFIGLVTLADRYLVREPESRRLLETPQYLFMRVAMGLALAEE 211
Query: 118 -SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
+ R A++FY +S+F ++ STPTLFN+GT QLSSCYL+ V D + I E+ +
Sbjct: 212 PARRVHWALRFYEFMSTFRYLPSTPTLFNAGTPHHQLSSCYLADVHDSMDHILEAAGDFG 271
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
L+KYAGG+G T++R+ GSP++G NG S GVIPF+ + + AVNQGG+R+G + Y
Sbjct: 272 RLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFIHYYDALIKAVNQGGRRRGTLAVY 331
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH++IE F++L++N+GD R H +N A+W+PD F++RV W LF P VP+L
Sbjct: 332 LEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRVEAGEPWYLFDPAYVPELP 391
Query: 297 NKFGKEFEESYILYENQTKLGKI--KLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
+FG F ++Y Q + G++ + +K++ A L+R+IL+ L ET HPW+ FKDA N+
Sbjct: 392 ERFGAAFRDAYAARIRQAEAGELPARAWKRVDARQLFREILATLQETSHPWLVFKDAGNV 451
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RS G+IHSSNLCTEI L T+ +E+ VCNL S+NL H+ +D L T+ +AM
Sbjct: 452 RS--LLPGVIHSSNLCTEIFLPTTADEVAVCNLASVNLARHLGPAGIDWEALAATVAVAM 509
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LDNVID+N Y ++KA+ SNLRHRPVGLG+MGF + ++ + + Y+ EA AD+ +E
Sbjct: 510 RGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLGLGYADPEAADLADRVLEF 569
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS LA E+G + S+ S W +G +P D+L LE+ERG + + V+ S L+W+
Sbjct: 570 ISYHAILASHRLAGERGSFPSFAESGWARGKVPLDTLADLEEERG-RPVTVDRSARLDWE 628
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R+++ GMRN +A+APTATIS I G + S++P Y N+ + LSG+F E+NR LV
Sbjct: 629 GVRARVRQ-GMRNGAVLAVAPTATISLIAGTTPSLDPPYSNVFSRQTLSGKFLEVNRVLV 687
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+EL+++GLW E + + G+L I+ +P D+R Y TA+++ P +E + QKW+
Sbjct: 688 EELRQRGLW-EQVRDRIVEERGDLQPIAELPADIRHRYPTAYQVPPEAYLEIAARAQKWV 746
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSV---- 710
D S N++++++ ++ Y+ AW RGLK+TYYL YA+ S +
Sbjct: 747 DMGISRNLFLADRDLGAMERVYREAWRRGLKSTYYLFMAPRMYAEPSTVRVNKARRKLRW 806
Query: 711 NLDEISIKG 719
NLDE + G
Sbjct: 807 NLDEPAPAG 815
>gi|422593727|ref|ZP_16668019.1| ribonucleotide-diphosphate reductase subunit alpha, partial
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|330984036|gb|EGH82139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 610
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/441 (64%), Positives = 346/441 (78%), Gaps = 4/441 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P YS V ARLL ++ E + + + Y + + G+ N LNP L +
Sbjct: 172 IEQEPDYSFVNARLLWLELKNE--SRAVLGLGSDATYADDLKAALEFGVKNDHLNPVLID 229
Query: 61 --FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
F++ L AL + D+QF YLG + LYDRYFLH G + E PQ FFMR+AMGLSL E
Sbjct: 230 GTFDVDQLGRALREKGDMQFTYLGAQTLYDRYFLHSNGQKFERPQVFFMRVAMGLSLEEK 289
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ AI+FYNL SSF++M STPTLFN+GT+RSQLSSCYL+TVPDDL GI+ +I +NA+L
Sbjct: 290 KPTERAIEFYNLFSSFDYMASTPTLFNAGTLRSQLSSCYLTTVPDDLSGIYHAIHDNAML 349
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CAYLE
Sbjct: 350 SKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLE 409
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
+WH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV K WTLFSP D PDLH+
Sbjct: 410 SWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDKGQWTLFSPSDAPDLHDL 469
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
GK FEE Y YE G+IK++K+I+A LWRK+LSMLFETGHPW+TFKD CN+RSPQ
Sbjct: 470 VGKAFEERYTQYEAMADAGEIKVYKRIAAGDLWRKMLSMLFETGHPWLTFKDPCNLRSPQ 529
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
QHVG++HSSNLCTEITLNTSK+EI VCNLGSINL H+ +GKLD KL+KTI A+R+LD
Sbjct: 530 QHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLPNHIVDGKLDLAKLQKTINTAVRILD 589
Query: 419 NVIDINYYAVKKAKYSNLRHR 439
NVIDINYY+V +A+ SNL+HR
Sbjct: 590 NVIDINYYSVPQAENSNLKHR 610
>gi|317122810|ref|YP_004102813.1| ribonucleoside-diphosphate reductase subunit alpha [Thermaerobacter
marianensis DSM 12885]
gi|315592790|gb|ADU52086.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thermaerobacter marianensis DSM 12885]
Length = 855
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/711 (41%), Positives = 447/711 (62%), Gaps = 14/711 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P +V R + + + V E P Y+ F +I KG+ L+ +L
Sbjct: 86 LHREPRMERVAVRARLRQLYRCVLNDEAPS---PAAYRAAFPAYIRKGVACGALDERLLA 142
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE- 117
F+L L+ +L PERD ++GL L DRY + R +E PQF FMR+AMGL+L E
Sbjct: 143 FDLDELAASLRPERDETLPFIGLVTLMDRYLVREPESRQWLETPQFLFMRVAMGLALAEE 202
Query: 118 -SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
+R A +FY+ +S+F ++ STPTLFN+GT QLSSCYL+ V D + I ++ ++
Sbjct: 203 PGHRGAWARRFYHAMSTFRYLPSTPTLFNAGTPHHQLSSCYLADVHDSMDHILDAARDFG 262
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
L+KYAGG+G T++R+ GSP++G NG S GVIPF+ + + AVNQGG+R+G + Y
Sbjct: 263 RLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFVHFYDALIKAVNQGGRRRGTLAVY 322
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH++IE F++L++N+GD R H +N A+W+PD F++RV W LF P VP+L
Sbjct: 323 LEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRVEAGEPWYLFDPAYVPELP 382
Query: 297 NKFGKEFEESYILYENQTKLGKI--KLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
K G++F +Y Q + G + + +K++ A L+R+IL+ L ET HPW+ FKDA N+
Sbjct: 383 EKVGRDFAAAYAERIRQAEAGALPARAWKRVDARQLFREILATLQETSHPWLVFKDAGNL 442
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RS G+IHSSNLCTE+ L T+ +E+ VCNL S+NL H+ +D L +T+ +AM
Sbjct: 443 RS--LLPGVIHSSNLCTEVFLPTTADEVAVCNLASVNLARHLGPQGIDWDALAETVAVAM 500
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LDNVID+N Y ++KA+ SNLRHRPVGLG+MGF + ++ + Y+ EA D+ +E
Sbjct: 501 RGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLGWGYADPEAADLVDRVLEF 560
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A AS LAEE+G + ++ S W QG +P D+L LE ERG + V+ + L+W+
Sbjct: 561 ISYHAILASHRLAEERGSFPAFAESGWAQGRVPIDTLADLEAERGEP-VTVDRTARLDWE 619
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R ++++ GMRN +AIAPTATIS I G + S++P Y N+ + LSG+F EINR LV
Sbjct: 620 SVRAQVRR-GMRNGTVMAIAPTATISLIAGTTPSLDPPYANVFSRQTLSGKFLEINRVLV 678
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+EL+++GLW E++ + G+L I+ +P D+R Y TA+++ P +E + QKW+
Sbjct: 679 EELERRGLW-EAVRDRIVEERGDLQPIAELPSDIRHRYPTAYQVPPEAYLEVAARAQKWV 737
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
D S N++++++ ++ Y AW RGLK+TYYL YA+ S +
Sbjct: 738 DMGISRNLFLADRDLGTMERVYVEAWRRGLKSTYYLFMAPRMYAEPSTVRV 788
>gi|328950374|ref|YP_004367709.1| ribonucleoside-diphosphate reductase subunit alpha [Marinithermus
hydrothermalis DSM 14884]
gi|328450698|gb|AEB11599.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus
hydrothermalis DSM 14884]
Length = 789
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 313/753 (41%), Positives = 458/753 (60%), Gaps = 24/753 (3%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNL 63
+P SQ+ R+L+ +E G P Y++ F +++ I L+P+L + +L
Sbjct: 54 EPAASQIAVRVLLRHNYREALGTPTPS---PAAYRQGFIRYVQNAIREGYLDPRLGDLDL 110
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLNESNRE 121
L+ L PERD + Y GL L DRY + + G +E PQF FMR+AMGL+L E+
Sbjct: 111 EALATTLRPERDAELPYAGLVALLDRYVVRDLVSGRVLETPQFLFMRVAMGLALAEAEPL 170
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKY 181
+FY +S + STPTLFN+GT QLSSCYL + D L I + ++ L+KY
Sbjct: 171 AWIPRFYEAISRRRVLPSTPTLFNAGTPHPQLSSCYLWVIEDSLDAILDGLQTFGKLAKY 230
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWH 241
AGG+G T++R+ G+P++G +G S GVIPFL V + + AVNQGG+R+G + AYLE WH
Sbjct: 231 AGGIGASLTKLRAKGAPVRGISGHSSGVIPFLNVYDALIQAVNQGGRRRGTMAAYLEPWH 290
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
+++E F++LRKNTGD R +N A++VPD FM+RV + W LF P PDL +G+
Sbjct: 291 LEVEAFLDLRKNTGDPYLRVRRLNTALFVPDEFMRRVERGEAWYLFDPQVAPDLAETWGR 350
Query: 302 EFEESYILYENQTKLGKI--KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
F+E+Y Y + G++ + +KK+ A L+R+IL++L ET HPW+ FKDA N RS
Sbjct: 351 AFDEAYARYIQAAEAGQLPPRSWKKLPARKLYREILAVLQETSHPWLVFKDAGNARSALA 410
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
VG++HSSNLCTEI L TS+ EI VCNL S+NL +++ G++ L K+ +AMRMLDN
Sbjct: 411 AVGMVHSSNLCTEIFLPTSQEEIAVCNLASLNLAAYLQRGRIQWRALAKSAHLAMRMLDN 470
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID N Y +A+ SN +RPVGLGIMGF + + + Y EA D+ E + Y+A
Sbjct: 471 VIDQNLYPDPRAEQSNWNNRPVGLGIMGFSEVFSRLGLAYPDPEAYALTDRITEYVSYHA 530
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA E+G + + + W QG LP D+L+ LE+ RG+ ++V+ L+W LR
Sbjct: 531 IQASALLARERGAFPRFPRTTWAQGRLPLDTLEDLERLRGAP-VEVSREARLDWDALRPL 589
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
++K GMRNS +AIAPTA+IS I G + S++P Y N+ ++NLSG+F E+N LV+ LK+
Sbjct: 590 VQK-GMRNSTVMAIAPTASISLIAGTTPSLDPYYANVFSRNNLSGKFLEVNPVLVEALKR 648
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLW E + + G+LS+I IP+ LR+ + TA++I P IE + QKW+D S
Sbjct: 649 AGLW-EEVRERIVEERGDLSEIEAIPEPLRRRFPTAYQIPPTAYIEHAARAQKWVDMGVS 707
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
N+Y+ +S + ++ Y AW +GLK+TYYL YA++S +V +++ + K
Sbjct: 708 RNLYLQERSLEAMEAVYLEAWRKGLKSTYYLYVAPRMYAEQS-------TVRVNK-ARKR 759
Query: 720 YNKNLQEIKNNKKCLINSEINDVNE---CESCQ 749
L+E+ + EI D +E CE CQ
Sbjct: 760 PKWRLEEMAFTPE---RPEIQDPSEDALCEGCQ 789
>gi|390957922|ref|YP_006421679.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
roseus DSM 18391]
gi|390958264|ref|YP_006422021.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
roseus DSM 18391]
gi|390412840|gb|AFL88344.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
roseus DSM 18391]
gi|390413182|gb|AFL88686.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
roseus DSM 18391]
Length = 825
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 333/766 (43%), Positives = 476/766 (62%), Gaps = 48/766 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ +RLL+ I KEV G+ + FS+ + G +++P +AE
Sbjct: 91 IAEEPQYSKLASRLLLATILKEVAGQNLHS----------FSQSVEYGAQVGIVSPAVAE 140
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F ++ L+ A+ + D +F Y GL+ +YDRY L R IE PQ FF+R+A GL+
Sbjct: 141 FVRIHMRKLNQAIKEDNDDRFEYFGLRTVYDRYLLRDPLSRKVIETPQHFFLRVACGLAG 200
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKE 174
AI+FYNL+SS ++M S+PTLFNSGT Q+SSCYL P D L I++S K+
Sbjct: 201 TPHE----AIEFYNLISSHDYMPSSPTLFNSGTKHPQMSSCYLHDSPQDSLESIYDSYKD 256
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
ALLSK++GG+G + +VRS GS I+ TNG S G++P+L+ ++ AVNQGGKRKGA C
Sbjct: 257 VALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSSVAAVNQGGKRKGACC 316
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH DIE F+ELR+NTGD RRT+++N+A W+PDLFMKRV + W+LF P VP
Sbjct: 317 VYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMKRVDEDGMWSLFDPKLVPQ 376
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + FG+EFE++YI Q + KI ++++ A L+ +++ L ETG+ W+TFKDACN+
Sbjct: 377 LPDLFGEEFEKAYI----QAEEDKI-YYRQMKARDLYARMMRSLAETGNGWMTFKDACNV 431
Query: 355 RSPQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGK--LDPIKLK 407
++ Q + +IH SNLCTEIT TSK+E VCNLGS+NL HMK NGK D KL
Sbjct: 432 KNNQTGLPGNVIHLSNLCTEITEVTSKDETAVCNLGSVNLGRHMKTDENGKTVFDFEKLA 491
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
T+R+A+ MLD VIDIN+Y V++A +N R RPVGLG+MG QD M++P+ S EA
Sbjct: 492 NTVRVAVPMLDRVIDINFYPVQQALKANNRWRPVGLGVMGLQDVFFQMRLPFDSPEAQAL 551
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
+ + E I YYA A+TELAE+ G + S++ + QG D K+
Sbjct: 552 STKIQEEIYYYAMLATTELAEKNGPHPSFNETRLAQGNFQFD------------LWKITP 599
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
SE W+ LR RIK+ G+RNS +AIAPTATI++I+G IEP NL + LSGEF
Sbjct: 600 SEPERWEALRQRIKQSGVRNSLLIAIAPTATIASIVGCYECIEPQISNLFKRETLSGEFL 659
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
++NRYL+ ELK G+W+E M LK +G++ I + D+L+ IY T +E+ +I+
Sbjct: 660 QVNRYLINELKALGMWNEEMRMKLKMSEGSVQNIDDLTDELKLIYRTVWEVPMRSLIDMA 719
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI 707
+ R +IDQ+QSLN++ + + +L Y AW +GLKTTYYLRS A K+ + G
Sbjct: 720 AARNAYIDQAQSLNLFSESPNIGRLSSMYMYAWKQGLKTTYYLRSRPATKIAKTTVQKGA 779
Query: 708 DSVNLDEIS-IKGYNKNLQEIKN---NKKCLINSEINDVNECESCQ 749
S +L + + + N ++ E + + I + + CE+CQ
Sbjct: 780 MSSSLPQTAQAQLQNVSVPEPEQQPIDASAAIACSLENPESCEACQ 825
>gi|301629347|ref|XP_002943804.1| PREDICTED: ribonucleoside-diphosphate reductase subunit alpha-like
[Xenopus (Silurana) tropicalis]
Length = 1234
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 270/403 (66%), Positives = 331/403 (82%), Gaps = 4/403 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EKDP Y+ TARLL++ I +EV G+++ + Y F + I KG+DN+LL+P+L +
Sbjct: 212 IEKDPDYTYATARLLLHTIVREVLGQDVAPAAMGEAYANSFPQCIQKGVDNELLDPQLLQ 271
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
F+L L+ AL +RDLQF+YLGL+ LYDRYFLH+ RIE+PQ FFMR+AMGL+L E +
Sbjct: 272 FDLPRLAKALQAQRDLQFDYLGLQTLYDRYFLHVRKARIELPQSFFMRVAMGLALREGDL 331
Query: 121 EKC----AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
+ AI+FY +LSSF+FM STPTLFNSGT+RSQLSSCYL+TVPD+L GI+E+IKENA
Sbjct: 332 QTTGTERAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDNLEGIYEAIKENA 391
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LLSK+AGGLGNDWT+VR+LGS IKGTNG SQGV+PFLKVVND AVAVNQGGKRKGA+C Y
Sbjct: 392 LLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTY 451
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV+ K WTLFSP + PDLH
Sbjct: 452 LETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFSPSETPDLH 511
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ FE +Y YE G++ LFK+++A+ LWRK+LSMLFETGHPWITFKD CNIRS
Sbjct: 512 DLYGQAFERAYCAYEAMADRGELTLFKRVAAVDLWRKMLSMLFETGHPWITFKDPCNIRS 571
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG 399
PQQHVG++HSSNLCTEITLNTS+ E VCNLGS+NL H++ G
Sbjct: 572 PQQHVGVVHSSNLCTEITLNTSETETAVCNLGSVNLLRHIQGG 614
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/306 (54%), Positives = 225/306 (73%), Gaps = 13/306 (4%)
Query: 452 LHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSL 511
L+ ++IPY+S A+ FAD+SME ICYYAY+ASTELA+E+G+Y+SY GSLW++GILP D+L
Sbjct: 934 LYELRIPYASDAAVAFADESMEAICYYAYWASTELAKERGQYASYRGSLWERGILPLDTL 993
Query: 512 KLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEP 571
LL++ R +++V+ S L+W LR +I + GMRN+NCVAIAPTATISNI+GV ASIEP
Sbjct: 994 NLLQQAR-DGHVQVDRSTRLDWDALRKKIAQDGMRNANCVAIAPTATISNIVGVDASIEP 1052
Query: 572 TYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKI 631
++ NL +KSNLSGEFT +N YLV++LK+ GLWD+ M+ +LK+F G+L I R P DL+ +
Sbjct: 1053 SFGNLSVKSNLSGEFTVVNAYLVRDLKRLGLWDDVMVMDLKHFKGSLQPIDRAPQDLKAL 1112
Query: 632 YATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLR 691
YATAFE+ P W++EA S RQKWIDQ+QSLNIY+ SGKKLDETYKLAW+RGLKTTYYLR
Sbjct: 1113 YATAFEVEPRWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDETYKLAWVRGLKTTYYLR 1172
Query: 692 SISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLIN-SEINDVN------- 743
+ SA + + S ++ L+ ++ G + L+ + +N + DV
Sbjct: 1173 TQSATHVEMST----VNKRQLNAVASHGPDDALEAAAAAAQAQMNATPATDVKFCALDDP 1228
Query: 744 ECESCQ 749
CE+CQ
Sbjct: 1229 GCEACQ 1234
>gi|347756559|ref|YP_004864122.1| ribonucleoside-diphosphate reductase subunit alpha [Candidatus
Chloracidobacterium thermophilum B]
gi|347589076|gb|AEP13605.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
Chloracidobacterium thermophilum B]
Length = 800
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 324/756 (42%), Positives = 457/756 (60%), Gaps = 48/756 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL I KEV + I FS+ I G D L+N ++ F
Sbjct: 84 EEPEYSRLAARLLATYIHKEVRNQNIYS----------FSQSITAGYDLGLINDRVRNFV 133
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L A+ ERD F Y GL+ +YDRY L R +E PQ+FF+R+A GL+
Sbjct: 134 SENRRKLDEAICDERDQAFEYFGLRTVYDRYLLKHPTSRAVLETPQYFFLRVASGLAQTV 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ AI+ Y LLSS +M STPTLFN+GT QLSSC+L P DDL I++ + A
Sbjct: 194 AE----AIELYQLLSSLEYMASTPTLFNAGTRHEQLSSCFLLDSPEDDLAAIYQKYTDVA 249
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LLSK+AGG+G + +VRS GS I+GTNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 250 LLSKFAGGIGLAYHRVRSKGSLIRGTNGHSNGIVPWLKTLDSSVAAVNQGGKRKGACCVY 309
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DIE+F+ELR NTGD+ RRT+++N+A W+PDLFMKRV + W+LF P VP L
Sbjct: 310 LEPWHADIEDFLELRDNTGDEARRTYNLNLANWIPDLFMKRVEEDGPWSLFDPKLVPHLP 369
Query: 297 NKFGKEFEESYILYENQTKLGKIKLF-KKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE +Y+ E++ KL+ ++I A L+++++ L +TG+ W+TFKDA N +
Sbjct: 370 DLYGEEFEAAYLKAESE------KLYTRQIRARDLYQRMMRTLAQTGNGWMTFKDAANRK 423
Query: 356 SPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
Q Q ++H SNLCTEI TS E VCNLGS+NL H+ +G+ D KL + +RIA
Sbjct: 424 CNQTAQPGRVVHLSNLCTEIIEVTSPTETAVCNLGSLNLARHVTDGRFDFEKLARNVRIA 483
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VIDIN+Y + SN R RP+GLG+MG QD +++P+ S EA++ + + E
Sbjct: 484 VRQLDRVIDINFYPIPSTAASNRRWRPIGLGLMGLQDVFFQLRLPFDSPEALELSTRIQE 543
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ Y+A AS +LAE G + ++ + QGIL D V + W
Sbjct: 544 EVYYHALAASCDLAEVHGPHPAFPETRAAQGILQFD------------LWGVTPPDPERW 591
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
K LR RI+ G+RNS +AIAPTATI++I G +IEP NL + LSG+F +INRYL
Sbjct: 592 KALRERIRATGLRNSLLIAIAPTATIASICGCYEAIEPQVSNLFKRETLSGDFLQINRYL 651
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK+ GLW+E + +K DG++ I+ IP+DLR++Y TA+E+ +I+ + R +
Sbjct: 652 VEDLKRLGLWNEDIRTQIKLADGSIQGIAAIPEDLRRLYRTAWELPMRALIDMAAARGAY 711
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
IDQSQSLN+++ + S KL Y AW +GLKTTYYLRS A K+ +V
Sbjct: 712 IDQSQSLNLFMESPSIGKLSSMYMYAWKKGLKTTYYLRSRPATTIAKA-------TVAPT 764
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G + + + + + CE+CQ
Sbjct: 765 AAGTGGNGPGAPQPTPSDDAALACSLANPESCEACQ 800
>gi|221633389|ref|YP_002522614.1| ribonucleoside-diphosphate reductase subunit alpha [Thermomicrobium
roseum DSM 5159]
gi|221155945|gb|ACM05072.1| ribonucleoside-diphosphate reductase, alpha subunit
[Thermomicrobium roseum DSM 5159]
Length = 770
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/726 (40%), Positives = 439/726 (60%), Gaps = 25/726 (3%)
Query: 34 PIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLH 93
P+ Y E+F +F+ +GI L+P+L F L +L+ AL P RD Y L L DRY +
Sbjct: 60 PLPYPEHFRRFVERGIARGALDPRLRTFQLDVLARALDPARDALLGYAALATLADRYLVR 119
Query: 94 IEGIR--IEMPQFFFMRIAMGLSLNES--NREKCAIKFYNLLSSFNFMCSTPTLFNSGTI 149
R +E PQ FMR+AMGL+L E R A+++Y+L+SS ++ STPTLFN+GT
Sbjct: 120 DPETRQLLERPQALFMRVAMGLALVEPPETRTSWALRWYDLMSSLRYLPSTPTLFNAGTP 179
Query: 150 RSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGV 209
QL+SCYL+ V D L I S E +L+KYAGG+G T++R+ G+P++G NG S G+
Sbjct: 180 HHQLASCYLAEVEDSLESILGSAYEFGMLAKYAGGIGTAVTRIRATGAPVRGINGTSGGL 239
Query: 210 IPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIW 269
IPFL + + + +++QGG+R+G +C YLE WH+++E F++LR+N GD RRTH +N A+W
Sbjct: 240 IPFLHLYDALIASISQGGRRRGTMCVYLEPWHLEVEAFLDLRRNAGDPYRRTHQLNTALW 299
Query: 270 VPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKI--KLFKKISA 327
+PD F++RV W LF P P+L + G F E Y Q + G + + ++++ A
Sbjct: 300 IPDEFLRRVETDDLWYLFDPIVAPELPDLVGAAFSERYRELCRQAEAGMLPRRAWRRLPA 359
Query: 328 LYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNL 387
LW IL+ L ETGHPW+TFKDA N+RS + +G+IHSSNLCTEI L TS++E+ VCNL
Sbjct: 360 RELWLAILASLMETGHPWLTFKDAGNLRSQLRGIGVIHSSNLCTEIFLPTSRDEVAVCNL 419
Query: 388 GSINLTLH-MKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIM 446
GS+NL H G+LD +L T+R+AMR LDNVID N Y ++A +N +RPVGLG+M
Sbjct: 420 GSVNLARHCTPTGELDWEQLAATVRLAMRALDNVIDANLYPSERAARANQLNRPVGLGLM 479
Query: 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGIL 506
GF + L + Y+ A ADQ E + Y+A AS LAEE+G + ++ S W G+L
Sbjct: 480 GFAELLARRAVSYAEPAAADLADQIAEFLSYHAISASCALAEERGAFPNFAFSRWAAGVL 539
Query: 507 PQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVS 566
P D+L L +RG ++V+ + L+W+ LR R+++ GMRN +A+APTATI+ + G +
Sbjct: 540 PIDTLDELAADRGLP-VEVDRTRRLDWEPLRQRVRR-GMRNGAVMAVAPTATIALLAGTT 597
Query: 567 ASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD 626
S++P Y N+ + LSG+F E+N LV+EL+++GLW E ++ L G+L + P
Sbjct: 598 PSLDPYYANVFSRQTLSGKFLEVNPILVEELRRRGLW-EQLLPGLVAARGDLRAVPGCPP 656
Query: 627 DLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT 686
DL + TA+++ IE + QKW+D S N+Y + ++ Y AW +GLK+
Sbjct: 657 DLVARFPTAYQVPAESYIEVAARVQKWVDMGVSRNLYHAADRPGQMSAVYLAAWRKGLKS 716
Query: 687 TYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDV---N 743
TYY F + +++ + Q ++ ++ ++ S+
Sbjct: 717 TYYC------------FVRPRMEIEQSTVAVNKARRRPQWVQLAEREVLASDAASCRLDG 764
Query: 744 ECESCQ 749
CESCQ
Sbjct: 765 SCESCQ 770
>gi|320107275|ref|YP_004182865.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
saanensis SP1PR4]
gi|319925796|gb|ADV82871.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
saanensis SP1PR4]
Length = 815
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 321/713 (45%), Positives = 449/713 (62%), Gaps = 44/713 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL+ I KEV G+ + FS+ I+ G +++ AE
Sbjct: 96 IAEEPQYSKLAARLLLGTIMKEVVGQNLHS----------FSQSISYGYQEGVVSKATAE 145
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSL 115
F ++ L++A+ E +F Y GL+ +YDRY L I IE PQ FF+R+A GL+
Sbjct: 146 FVQTHMRKLNHAINDELSDRFEYFGLRTVYDRYLLRDPISRKVIETPQHFFLRVACGLAG 205
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKE 174
AI+FYNL++S ++M S+PTLFNSGT +Q+SSCYL P D L I+++ K
Sbjct: 206 TPHE----AIEFYNLIASHDYMPSSPTLFNSGTKHAQMSSCYLHDSPLDSLDSIYDTYKN 261
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
ALLSK++GG+G + +VRS GS I+ TNG S G++P+L+ ++ AVNQGGKRKGA C
Sbjct: 262 VALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSSVAAVNQGGKRKGACC 321
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH DIE F+ELR+NTGD RRT+++N+A W+PDLFM+RV + W+LF P +VP
Sbjct: 322 VYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMQRVDEDGIWSLFDPKEVPT 381
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
+ +GKEFEE+YI E K ++I A L+ +++ L ETG+ W+TFKDACNI
Sbjct: 382 FPDLYGKEFEEAYIQAETDK-----KYHRQIKARDLYMRMMRSLAETGNGWMTFKDACNI 436
Query: 355 RSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIR 411
++ Q + ++H SNLCTEIT TSK+E VCNLGS+NL H+ GK D KL T+R
Sbjct: 437 KNNQTGKPGNVVHLSNLCTEITEVTSKDETAVCNLGSVNLARHVTPEGKFDFEKLANTVR 496
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
IA+ MLD VIDINYY V +A +N R RPVGLG+MG QD M+IP+ S EA+ + +
Sbjct: 497 IAVPMLDRVIDINYYPVPQAASANARWRPVGLGVMGLQDVFFQMRIPFDSPEALAISTKI 556
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQD--SLKLLEKERGSKYLKVNMSE 529
E I YYA AS ELAE +G++ S+D + +G D ++K + ER
Sbjct: 557 QEEIYYYAVLASVELAEREGKHPSFDETRLAKGEFQFDLWNVKPADPER----------- 605
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR RI K G+RNS +AIAPTATI++I+G IEP NL + LSGEF ++
Sbjct: 606 ---WDALRQRILKSGIRNSLLIAIAPTATIASIVGCYECIEPQISNLFKRETLSGEFLQV 662
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
NRYL++ELK++G+W E M +K +G++ + +P+DLR +Y T +E+ +I+
Sbjct: 663 NRYLIEELKQRGMWTEEMRVRMKMSEGSVQAMEDLPEDLRAVYRTVWEVPMRSLIDMARD 722
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
R +IDQSQSLN++ + + +L Y AW GLKTTYYLRS A K+
Sbjct: 723 RNAFIDQSQSLNLFAESPNIGRLSSMYMHAWKSGLKTTYYLRSRPATKISKTT 775
>gi|426403938|ref|YP_007022909.1| ribonucleoside-diphosphate reductase subunit alpha [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860606|gb|AFY01642.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 821
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 323/758 (42%), Positives = 465/758 (61%), Gaps = 43/758 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP---KLA 59
+DP YS++ ARLL I +EV ++I+ F+ ++ G LL K
Sbjct: 96 EDPEYSRLAARLLSTYIDEEVRSQKIQS----------FADSVSFGFQAGLLAESTYKFV 145
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
E N + L A+ P R +F Y GL+ +YDRY L R E PQ+FFMR+A GL+ +
Sbjct: 146 ETNKAALCAAIEPYRTDRFEYFGLRTVYDRYLLKNPTTRQVFETPQYFFMRVACGLA--Q 203
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
S E AI+FY L+SS ++M STPTLFNSGT+R Q+SSCYL P DDL I++ + A
Sbjct: 204 SVEE--AIEFYRLISSHDYMPSTPTLFNSGTMRPQMSSCYLLDSPSDDLTAIYQKYTDIA 261
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LLSK+AGG+G +++VRS GS IKGTNG S G+IP+LK ++ AVNQGGKRKGA C Y
Sbjct: 262 LLSKFAGGIGVAYSRVRSRGSLIKGTNGHSNGIIPWLKTMDSSVAAVNQGGKRKGAACVY 321
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIEEF+ELR NTGD+ +R H++N+A WVPDLFMKRV + W+LF P VP
Sbjct: 322 LETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAMWSLFDPKVVPHFV 381
Query: 297 NKFGKEFEESYILYENQTKLGKIKLF-KKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE++Y E + KL+ K++ A L+ +++ L +TG+ W+TFKD N++
Sbjct: 382 DTYGEEFEKAYTEAEEK------KLYIKQLKARDLYSRMMKTLAQTGNGWMTFKDHANLK 435
Query: 356 SPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+ Q + +IH SNLCTEI TS E VCNLGS+NL+ H++NG+ + KL +++R A
Sbjct: 436 ANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLSRHVENGQFNFEKLARSVRTA 495
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
++ LD V+DIN+Y + A+ SN + RPVGLG+MG QD L +MK+P+ S A + + E
Sbjct: 496 VKYLDRVVDINFYPIGTAQDSNHKWRPVGLGVMGLQDALFLMKLPFDSAAARDLSARVQE 555
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I Y A S ELAE+ G + +Y+ + +G+L D V S+ +
Sbjct: 556 EIYYNALVTSCELAEKHGPHGAYEQTKAAKGLLQYD------------LWGVTPSQPERF 603
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+KL+ +IKK G+RNS +AIAPTATI++I+G +IEP NL + LSGEF +IN+YL
Sbjct: 604 EKLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLFKRETLSGEFMQINKYL 663
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK G+W E + +K DG++ ++ IP ++++Y T +EI +++ + R +
Sbjct: 664 VGDLKAMGIWTEDVRNEIKLQDGSIQDVAMIPPQIKELYRTVWEIPMKSLVDMAADRGAY 723
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
IDQ+QSLN++ + + KL Y AW +G+KTTYYLRS A K+ + +S N
Sbjct: 724 IDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKTTYYLRSRPATKIAKTTVKASSNSANPT 783
Query: 714 EISIKGYNKNLQEIKN--NKKCLINSEINDVNECESCQ 749
QE K + +I + + CE+CQ
Sbjct: 784 ASESMMDAAPAQEAKKSYSDAEVIACSLENPEACEACQ 821
>gi|42523461|ref|NP_968841.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
bacteriovorus HD100]
gi|39575667|emb|CAE79834.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
bacteriovorus HD100]
Length = 801
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 321/758 (42%), Positives = 465/758 (61%), Gaps = 43/758 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP---KLA 59
+DP YS++ ARLL I +EV ++I+ F+ ++ G LL K
Sbjct: 76 EDPEYSRLAARLLSTYIDEEVRSQKIQS----------FADSVSFGYQAGLLAEHTYKFV 125
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
E N + L A+ P R +F Y GL+ +YDRY L R E PQ+FFMR+A GL+ +
Sbjct: 126 ETNKAALCAAIEPYRTDRFEYFGLRTVYDRYLLKNPTTRQVFETPQYFFMRVACGLA--Q 183
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
S E AI+FY L+SS ++M STPTLFNSGT+R Q+SSCYL P DDL I++ + A
Sbjct: 184 SVEE--AIEFYRLISSHDYMPSTPTLFNSGTMRPQMSSCYLLDSPSDDLSAIYQKYTDIA 241
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LLSK+AGG+G +++VRS GS IKGTNG S G+IP+LK ++ AVNQGGKRKGA C Y
Sbjct: 242 LLSKFAGGIGVAYSRVRSRGSLIKGTNGHSNGIIPWLKTMDSSVAAVNQGGKRKGAACVY 301
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIEEF+ELR NTGD+ +R H++N+A WVPDLFMKRV + W+LF P VP
Sbjct: 302 LETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAMWSLFDPKVVPHFV 361
Query: 297 NKFGKEFEESYILYENQTKLGKIKLF-KKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE++Y+ E + KL+ K++ A L+ +++ L +TG+ W+TFKD N++
Sbjct: 362 DTYGEEFEKAYVEAEEK------KLYIKQLKARDLYSRMMKTLAQTGNGWMTFKDHANLK 415
Query: 356 SPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIA 413
+ Q + +IH SNLCTEI TS E VCNLGS+NL H++NG+ + KL +++R A
Sbjct: 416 ANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLARHVENGQFNFEKLARSVRTA 475
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
++ LD V+DIN+Y + A+ SN + RPVGLG+MG QD L +MK+P+ S A + + E
Sbjct: 476 VKYLDRVVDINFYPIPTAQDSNHKWRPVGLGVMGLQDALFLMKLPFDSAAARDLSAKVQE 535
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I Y A S EL+E+ G + +++ + +G+L D V S+ +
Sbjct: 536 EIYYNALVTSCELSEKHGPHGAFEQTKAAKGLLQYD------------LWGVTPSQPERF 583
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+KL+ +IKK G+RNS +AIAPTATI++I+G +IEP NL + LSGEF +IN+YL
Sbjct: 584 EKLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLFKRETLSGEFMQINKYL 643
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +LK G+W E + +K DG++ ++ IP ++++Y T +EI +++ + R +
Sbjct: 644 VSDLKAMGIWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWEIPMKSLVDMAADRGAY 703
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLD 713
IDQ+QSLN++ + + KL Y AW +G+KTTYYLRS A K+ + +S N
Sbjct: 704 IDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKTTYYLRSRPATKIAKTTVKASSNSANPT 763
Query: 714 EISIKGYNKNLQEIKN--NKKCLINSEINDVNECESCQ 749
QE K + +I + + CE+CQ
Sbjct: 764 ASESMMDAAPAQEAKKSYSDAEVIACSLENPEACEACQ 801
>gi|421689400|ref|ZP_16129083.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-143]
gi|404558040|gb|EKA63325.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii IS-143]
Length = 790
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 320/714 (44%), Positives = 439/714 (61%), Gaps = 69/714 (9%)
Query: 8 SQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLS 67
S V+ARLL+ + K V G++ K +Y + ++ KG+ KLL+P+L ++L ++
Sbjct: 73 SLVSARLLLLDLYKTVCGEDGKVSGGGFQYP-HIKDYLEKGVSLKLLDPELLNYDLERIN 131
Query: 68 NALLPERDLQFNYLGLKILYDRYFL-------------HIEGIRIEMPQFFFMRIAMGLS 114
A+ PERDL F+YLGL L DRYF+ ++ G IE+PQ F+MR+AMG++
Sbjct: 132 AAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMSGNIIELPQHFWMRVAMGVA 191
Query: 115 LNESN--REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYG----- 167
L E R A+ +Y L S ++ STPTLFN+GT+ QLSSCYL+ V D +
Sbjct: 192 LKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQLSSCYLNQVSDTIAADEGDN 251
Query: 168 ----IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAV 223
IF +I+E ALLSK+AGG+G DWT VR I GTNG S GV+P++KV N+ AVAV
Sbjct: 252 RFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNGISSGVVPYIKVQNNTAVAV 311
Query: 224 NQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKR-VIKKS 282
NQGGKRKG++ YLE WH D F EL++ +GDDRRR HD+ A WVPDL ++R +
Sbjct: 312 NQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDVFPAAWVPDLLIERKEDPNA 371
Query: 283 TWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETG 342
W+ FSP P+LH FG EF + +E G+ + ++ A+ +WR L+ LFETG
Sbjct: 372 MWSFFSPKRFPELHELFGDEFVKR---FEELEAAGEYEF--QLPAIQVWRHTLTNLFETG 426
Query: 343 HPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLD 402
HPWITFKD CN R+PQQH G+IH SNLCTEI LNTSK+E VCNLGSINL+L M +
Sbjct: 427 HPWITFKDECNRRNPQQHAGVIHHSNLCTEIALNTSKDETAVCNLGSINLSLVMS--APN 484
Query: 403 PI-KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
P+ +L++ IR+A+R LD+VID+NYY +A SN +HRP+GLG+MG+ + L + + S
Sbjct: 485 PLERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGLGVMGYYEWLVKQGVDFES 544
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
+E +K AD E I Y+A AS +LA+E+G Y S++GS W +GILP D+ KL+E G
Sbjct: 545 EEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSKGILPIDNAKLMED--GKP 602
Query: 522 YLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ + +W+ LR ++KK GMRNSN +AIAPTATISNI G + EP + +KSN
Sbjct: 603 FF--DQPRRFDWEALREKVKK-GMRNSNLMAIAPTATISNIAGTTQCTEPPFLLEFLKSN 659
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
L G + ++ + K + D + Y+ L
Sbjct: 660 LGGTYQVVDPAI------KHIGDRYHLLKEAYYTDQL----------------------- 690
Query: 642 WIIEAGSVRQKWIDQSQSLNIYI-SNKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
+II+A +VRQKWIDQSQS N++ +G+ LD Y A GLKTTYYLR+ S
Sbjct: 691 YIIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGLKTTYYLRNQS 744
>gi|400976878|ref|ZP_10804109.1| ribonucleotide-diphosphate reductase subunit alpha [Salinibacterium
sp. PAMC 21357]
Length = 779
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/708 (40%), Positives = 449/708 (63%), Gaps = 6/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
++ DP + V ARLL+ I K V G D+ +KE+F I +G++ LL+P+L
Sbjct: 34 VKDDPAFDTVAARLLLKTIYKRVLGDYTDNADLKRLHKEHFGPNIIRGVEEGLLDPRLTS 93
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNES 118
F+L L+ L P D Y+G+ L +RY + G +E+PQ+F+MRIAMGLSLNE+
Sbjct: 94 MFDLDALAEHLEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYFWMRIAMGLSLNEA 153
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
N + A+KFY +SS ++ + TL N+GTI QL++C++ + DD+ I ++ ++ L
Sbjct: 154 NPNEAALKFYEKMSSLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDMEHIAKTTRDVMWL 213
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
+K GG+G T++R+ GSPI+ N S G IPF+ ++ + AV++GGK+ GA+C Y+E
Sbjct: 214 TKGTGGIGLSVTKLRAQGSPIRSNNTTSTGPIPFMHTIDSILRAVSRGGKKFGALCFYME 273
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WHMD EF+ELR N+GD RRT N A+W+ D FMKRV +W LF P +V DL+
Sbjct: 274 NWHMDFPEFLELRSNSGDPYRRTRTANTAVWISDEFMKRVQNDDSWYLFDPLEVTDLNEL 333
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G+ F + Y Y G++ +FKKI A ++ IL L + HPW+TFKD N R+
Sbjct: 334 YGQAFSKRYNEYVAMADAGEMHMFKKIGAREQFKSILISLQTSSHPWLTFKDTINNRALN 393
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH-MKNGKLDPIKLKKTIRIAMRML 417
+ G IH SNLCTEITL ++ + VCNL SINL+ H + G +D +K+ ++ ++A+R L
Sbjct: 394 NNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSRHLLPEGGVDFVKIAESAKLAVRQL 453
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DN+IDI +VK+A +SN ++R VGLG+MGF D + + Y S+EA D+ ME + Y
Sbjct: 454 DNLIDITRSSVKEADFSNEQNRAVGLGVMGFTDIIEKLGFSYESEEAYDLIDEIMEHVSY 513
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
A ASTELA+E+G Y++++GS W +G++P DS+ L E++RG + +KVN L+W +R
Sbjct: 514 AAIDASTELAKERGSYTNFEGSRWSEGLVPLDSIALTEQDRGME-IKVNRKTRLDWDAMR 572
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
++K GMRN+ +AIAPTA+I + G + ++P + + +S +G+F E+NR LV L
Sbjct: 573 EKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSNGKFLEVNRNLVATL 631
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
++ GLW+++ A L+ G++ ++ IPDD++ ++ T+F++SP +E + QKWIDQ+
Sbjct: 632 QEHGLWEQNREAILRS-QGDIQNVAGIPDDIKAVFKTSFQLSPYSFLEVAARAQKWIDQA 690
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N+Y+ + + + Y AW RG+KTTYYL + A++S ++
Sbjct: 691 ISRNMYLETRDLGDMMDIYHDAWSRGVKTTYYLHMKPRHQAEQSTVKV 738
>gi|403674142|ref|ZP_10936407.1| ribonucleotide-diphosphate reductase, alpha subunit [Acinetobacter
sp. NCTC 10304]
Length = 790
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 318/714 (44%), Positives = 440/714 (61%), Gaps = 69/714 (9%)
Query: 8 SQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLS 67
S V+ARLL+ + K V G++ K +Y + ++ KG+ KLL+P+L ++L ++
Sbjct: 73 SLVSARLLLLDLYKTVCGEDGKVSGGGFQYP-HIKDYLEKGVSLKLLDPELLNYDLERIN 131
Query: 68 NALLPERDLQFNYLGLKILYDRYFL-------------HIEGIRIEMPQFFFMRIAMGLS 114
A+ PERDL F+YLGL L DRYF+ ++ G IE+PQ F+MR+AMG++
Sbjct: 132 AAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMSGNIIELPQHFWMRVAMGVA 191
Query: 115 LNESN--REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYG----- 167
L E R A+ +Y L S ++ STPTLFN+GT+ QLSSCYL+ V D +
Sbjct: 192 LKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQLSSCYLNQVSDTIAADEGDN 251
Query: 168 ----IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAV 223
IF +I+E ALLSK+AGG+G DWT VR I GTNG S GV+P++KV N+ AVAV
Sbjct: 252 RFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNGISSGVVPYIKVQNNTAVAV 311
Query: 224 NQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKR-VIKKS 282
NQGGKRKG++ YLE WH D F EL++ +GDDRRR HD+ A WVPDL ++R +
Sbjct: 312 NQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDVFPAAWVPDLLIERKEDPNA 371
Query: 283 TWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETG 342
W+ FSP P+LH +G++F + YE G+ ++ A+ +WR +L+ LFETG
Sbjct: 372 MWSFFSPKRFPELHELYGEDFVKR---YEELEAAGEDDF--QLPAIQVWRHLLTNLFETG 426
Query: 343 HPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLD 402
HPWIT+KD CN R+PQQH G+IH SNLCTEITLNTSK+E VCNLGSINL+ M +
Sbjct: 427 HPWITYKDECNRRNPQQHAGVIHHSNLCTEITLNTSKDETAVCNLGSINLSQVMS--APN 484
Query: 403 PI-KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
P+ +L++ IR+A+R LD+VID+NYY +A SN +HRP+GLG+MG+ + L + + S
Sbjct: 485 PLERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGLGVMGYYEWLVKQGVDFES 544
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
+E +K AD E I Y+A AS +LA+E+G Y S++GS W +GILP D+ KL+E G
Sbjct: 545 EEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSKGILPIDNAKLMED--GKP 602
Query: 522 YLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ + +W+ LR ++KK GMRNSN +AIAPTATISNI G + EP + + KSN
Sbjct: 603 FF--DQPRRFDWEALREKVKK-GMRNSNVMAIAPTATISNIAGTTQCTEPPFLLEYFKSN 659
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
L G + ++ + K + D + Y+ L
Sbjct: 660 LGGTYQVVDPAI------KHVGDRYHLLKEAYYTDQL----------------------- 690
Query: 642 WIIEAGSVRQKWIDQSQSLNIYI-SNKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
+II+A +VRQKWIDQSQS N++ +G+ LD Y A GLKTTYYLR+ S
Sbjct: 691 YIIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGLKTTYYLRNQS 744
>gi|417872278|ref|ZP_12517186.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH1]
gi|417876220|ref|ZP_12521003.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH2]
gi|417876647|ref|ZP_12521404.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH3]
gi|417884107|ref|ZP_12528315.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH4]
gi|421793513|ref|ZP_16229638.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-2]
gi|445484272|ref|ZP_21456623.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-78]
gi|342223572|gb|EGT88662.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH1]
gi|342223767|gb|EGT88851.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH2]
gi|342234807|gb|EGT99443.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH4]
gi|342237264|gb|EGU01745.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH3]
gi|410396871|gb|EKP49131.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-2]
gi|444767896|gb|ELW92130.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-78]
Length = 796
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 336/770 (43%), Positives = 459/770 (59%), Gaps = 76/770 (9%)
Query: 8 SQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNLSLL 66
S V ARLL+ + K V G++ K KY + +I G+ LL+P L + ++L +
Sbjct: 75 SFVAARLLLLDLYKLVCGEQGKVDGGGFKYP-HIKDYIQGGVSCNLLDPALLQSYDLDRI 133
Query: 67 SNALLPERDLQFNYLGLKILYDRYFLH-------------IEGIRIEMPQFFFMRIAMGL 113
+ A+ PERDL F YLGL L DRYF+ G IE+PQ F+MR+AMG+
Sbjct: 134 NAAIKPERDLLFGYLGLDTLKDRYFIRKNRDVKYEKATGKTSGEIIELPQHFWMRVAMGV 193
Query: 114 SLNE--SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYG---- 167
++ E NR A+++Y + S+ N++ STPTLFN+GT+R QLSSCYL+ V D +
Sbjct: 194 AIKEKPENRTARALEYYEMYSTLNYISSTPTLFNAGTLRPQLSSCYLNQVSDTITAELGD 253
Query: 168 -----IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVA 222
IF +I+E ALLSK+AGG+G DWT VR I GTNG S GV+P++KV N+ AVA
Sbjct: 254 SRYASIFGAIEETALLSKFAGGIGTDWTPVRGENEIIIGTNGISSGVVPYIKVQNNTAVA 313
Query: 223 VNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKR-VIKK 281
VNQGGKRKG++ YLE+WH D F EL+K GDDR R HD+ A WVPDL MKR +
Sbjct: 314 VNQGGKRKGSVAPYLESWHPDFMSFCELKKEAGDDRLRAHDVFPAAWVPDLLMKRKEDPE 373
Query: 282 STWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFET 341
+ W+ FSP+ P+LH +G+EFE YE LG+ + ++ A+ +WR ILS LFET
Sbjct: 374 AMWSFFSPHKFPELHELYGEEFEAR---YEELEALGEFEF--QLPAIKVWRHILSNLFET 428
Query: 342 GHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL 401
GHPWITFKD N R+PQ HVG+IH SNLCTEITLNTSK E VCNLGSINL + M
Sbjct: 429 GHPWITFKDESNRRNPQSHVGVIHHSNLCTEITLNTSKEETAVCNLGSINLAVVMSGD-- 486
Query: 402 DPI-KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYS 460
+P+ KL+ +R+A+R LD+VID+NYY ++AK SNLRHRP+GLG+MG+ + L + +
Sbjct: 487 NPLEKLRTAVRLAIRNLDSVIDVNYYPSERAKLSNLRHRPIGLGVMGYYEWLVKQGVDFE 546
Query: 461 SKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGS 520
S + ++ AD E I Y+A AS +LA+E G Y S++GS W QGILP D+ K +E G
Sbjct: 547 SDQHLEQADALFEAISYFAIEASADLAQELGSYPSFEGSKWSQGILPIDTAKKMED--GK 604
Query: 521 KYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKS 580
+ + +W+ LR ++KK GMRNSN +AIAPTATISNI G + E + K+
Sbjct: 605 PFF--DRPRRFDWEALREKVKK-GMRNSNIMAIAPTATISNIAGTTQCTEVPFLLQFYKT 661
Query: 581 NLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISP 640
NL G + I+ ++++ N + AF +
Sbjct: 662 NLGGVYKVID------------------PSVRHVGTNY-----------HLLKEAFYVDQ 692
Query: 641 NWIIEAGSVRQKWIDQSQSLNIYI-SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
WII+A +VRQKWI QSQS N++ +G+ LD Y A +GLKTTYYLR SA
Sbjct: 693 LWIIKAAAVRQKWICQSQSTNLFAKQGTTGRDLDLIYTEAHRKGLKTTYYLRGQSATKDS 752
Query: 700 KSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + I+++ S L + + +++ + S +CESCQ
Sbjct: 753 ASAKDDVIEALK----SAVAQGATLSDAEAHQQAKLCSIFEP--DCESCQ 796
>gi|88856485|ref|ZP_01131143.1| ribonucleotide-diphosphate reductase alpha subunit [marine
actinobacterium PHSC20C1]
gi|88814352|gb|EAR24216.1| ribonucleotide-diphosphate reductase alpha subunit [marine
actinobacterium PHSC20C1]
Length = 813
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 289/708 (40%), Positives = 450/708 (63%), Gaps = 6/708 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
++ DP + V ARLL+ I K V G D+ +KE+F + +G++ LL+P+L E
Sbjct: 70 VKDDPAFDTVAARLLLKTIYKRVLGDYTDAADLKKLHKEHFGPNVIRGVEEGLLDPRLTE 129
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNES 118
F+L L+ L P D Y+G+ L +RY + G +E+PQ+F+MRIAMGLSLNE+
Sbjct: 130 MFDLDALAEHLEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYFWMRIAMGLSLNEA 189
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
N + A+KFY +SS ++ + TL N+GTI QL++C++ + DD+ I ++ ++ L
Sbjct: 190 NPNEAALKFYEKMSSLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDMEHIAKTTRDVMWL 249
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
+K GG+G T++R+ GSPI+ N S G IPF+ ++ + AV++GGK+ GA+C Y+E
Sbjct: 250 TKGTGGIGLSVTKLRAQGSPIRSNNTTSTGPIPFMHTIDSILRAVSRGGKKFGALCFYME 309
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WHMD EF+ELR N+GD RRT N A+W+ D FMKRV +W LF P +V DL+
Sbjct: 310 NWHMDFPEFLELRSNSGDPYRRTRTANTAVWISDEFMKRVQNDDSWYLFDPLEVTDLNEL 369
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+GK F + Y Y G++ +FKKI A ++ IL L + HPW+T+KD N R+
Sbjct: 370 YGKAFSKRYNEYVAMADAGEMHMFKKIGAREQFKSILISLQTSSHPWLTWKDTINNRALN 429
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH-MKNGKLDPIKLKKTIRIAMRML 417
+ G IH SNLCTEITL ++ + VCNL SINL+ H + G +D K++++ R+A+R L
Sbjct: 430 NNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSRHLLPEGGVDFAKIEESARLAVRQL 489
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
DN+IDI +VK+A +SN ++R VGLG+MGF D + + Y S+EA D+ ME + Y
Sbjct: 490 DNLIDITRSSVKEADFSNEQNRAVGLGVMGFTDIIEKLGFSYESEEAYDLIDEIMEHVSY 549
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
A ASTELA+E+G Y++++GS W +G++P DS+ L E++RG + +KVN L+W +R
Sbjct: 550 AAIDASTELAKERGAYTNFEGSRWSEGLVPLDSIALTEEDRGME-IKVNRKTRLDWDAMR 608
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
++K GMRN+ +AIAPTA+I + G + ++P + + +S +G+F E+NR LV+ L
Sbjct: 609 EKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSNGKFLEVNRNLVETL 667
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
++ GLW+++ A L+ G++ + IPDD++ ++ T+F++SP +E + QKWIDQ+
Sbjct: 668 QQHGLWEKNREAILRS-QGDIQNVEGIPDDIKAVFKTSFQLSPYAFLEVAARAQKWIDQA 726
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N+Y+ + + + Y AW RG+KTTYYL + A++S ++
Sbjct: 727 ISRNMYLETRDLGDMMDIYFDAWSRGVKTTYYLHMKPRHQAEQSTVKV 774
>gi|170782701|ref|YP_001711035.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157271|emb|CAQ02456.1| ribonucleoside-diphosphate reductase alpha subunit [Clavibacter
michiganensis subsp. sepedonicus]
Length = 834
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/707 (40%), Positives = 448/707 (63%), Gaps = 5/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
++ DP + V ARLL+ I K V G ++ + E+F++ I +G+D LL+ +L +
Sbjct: 70 VKDDPAFDTVAARLLLKTIYKRVLGDYSSPEELKRLHAEHFARNIQRGVDEMLLDSRLVQ 129
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNES 118
F+L L+ AL P D Y+G+ L +RY + G +E+PQ+F+MRIAMGL+LNE
Sbjct: 130 LFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYFWMRIAMGLTLNEQ 189
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
N + AI FY +S ++ + TL N+GTI QL++C++ + DD+ I ++ ++ L
Sbjct: 190 NPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDIEHIAKTTRDVMWL 249
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
+K GG+G +++R+ GSPI+ N S G IPF+ ++ V AV++GGK+ GA+C Y+E
Sbjct: 250 TKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALCFYME 309
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WH+D EF++LR+N+GD RRT N A+W+ D FMKRV W LF P +V DL+
Sbjct: 310 NWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPLEVSDLNEL 369
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+GK F E Y Y + + G+I++FK+I+A ++ IL L T HPW+T+KD N R+
Sbjct: 370 YGKAFSERYAFYVGEAEAGRIRMFKRINAREQFKSILISLQTTSHPWLTWKDTINNRALN 429
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
+ G IH SNLCTEITL ++ + VCNL SINL+ H +GK+D K++++ R+A+R LD
Sbjct: 430 NNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFAKIEQSARLAVRQLD 489
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
N+IDI +VK+A +SN ++R VGLG+MGF D + + Y S+E+ D+ ME + Y
Sbjct: 490 NLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGFSYESEESYDLIDEIMEHVSYA 549
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S +LA+E+G Y +++GS W +G++P DS+ L+E +RG +KVN + L+W LR
Sbjct: 550 AIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVP-VKVNRTTRLDWDALRA 608
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
++K GMRN+ +AIAPTA+I + G + ++P + + +S SG+F E+NR LVK+L+
Sbjct: 609 KVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVKDLQ 667
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+ G+W E++ N+ G++ I+ IPD ++ Y T+F++SP +E + QKWIDQ+
Sbjct: 668 ELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLEVAARAQKWIDQAI 726
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N+Y+ + + + Y W RG+KTTYYL + A++S ++
Sbjct: 727 SRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVKV 773
>gi|239502692|ref|ZP_04662002.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii AB900]
gi|417571641|ref|ZP_12222497.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC189]
gi|417874963|ref|ZP_12519789.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH2]
gi|421679366|ref|ZP_16119242.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC111]
gi|421808606|ref|ZP_16244450.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC035]
gi|424051301|ref|ZP_17788834.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab11111]
gi|425752360|ref|ZP_18870273.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-113]
gi|342227055|gb|EGT92003.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
baumannii ABNIH2]
gi|395550216|gb|EJG16230.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC189]
gi|404665976|gb|EKB33934.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Ab11111]
gi|410391321|gb|EKP43692.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC111]
gi|410415533|gb|EKP67321.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii OIFC035]
gi|425499105|gb|EKU65165.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
baumannii Naval-113]
Length = 790
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 319/714 (44%), Positives = 436/714 (61%), Gaps = 69/714 (9%)
Query: 8 SQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLS 67
S V+ARLL+ + K V G K +Y + ++ KG+ KLL+P+L ++L ++
Sbjct: 73 SLVSARLLLLDLYKTVCGVNGKVSGGGFQYP-HIKDYLEKGVSLKLLDPELLNYDLERIN 131
Query: 68 NALLPERDLQFNYLGLKILYDRYFL-------------HIEGIRIEMPQFFFMRIAMGLS 114
A+ PERDL F+YLGL L DRYF+ ++ G IE+PQ F+MR+AMG++
Sbjct: 132 AAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMSGNIIELPQHFWMRVAMGVA 191
Query: 115 LNESN--REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYG----- 167
L E R A+ +Y L S ++ STPTLFN+GT+ QLSSCYL+ V D +
Sbjct: 192 LKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQLSSCYLNQVSDTIAADEGDN 251
Query: 168 ----IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAV 223
IF +I+E ALLSK+AGG+G DWT VR I GTNG S GV+P++KV N+ AVAV
Sbjct: 252 RFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNGISSGVVPYIKVQNNTAVAV 311
Query: 224 NQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKR-VIKKS 282
NQGGKRKG++ YLE WH D F EL++ +GDDRRR HD+ A WVPDL ++R +
Sbjct: 312 NQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDVFPAAWVPDLLIERKEDPNA 371
Query: 283 TWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETG 342
W+ FSP P+LH +G++F + YE G+ ++ A+ +WR +L+ LFETG
Sbjct: 372 MWSFFSPKRFPELHELYGEDFVKR---YEELEAAGEYDF--QLPAIQVWRHLLTNLFETG 426
Query: 343 HPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLD 402
HPWIT+KD CN R+PQQH G+IH SNLCTEITLNTSK+E VCNLGSINL+ M +
Sbjct: 427 HPWITYKDECNRRNPQQHAGVIHHSNLCTEITLNTSKDETAVCNLGSINLSQVMS--APN 484
Query: 403 PI-KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
P+ +L++ IR+A+R LD+VID+NYY +A SN +HRP+GLG+MG+ + L + + S
Sbjct: 485 PLERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGLGVMGYYEWLVKQGVDFES 544
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
+E +K AD E I Y+A AS +LA+E+G Y S++GS W +GILP D+ KL+E G
Sbjct: 545 EEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSKGILPIDNAKLMED--GKP 602
Query: 522 YLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ + +W+ LR ++KK GMRNSN +AIAPTATISNI G + EP + + KSN
Sbjct: 603 FF--DQPRRFDWEALREKVKK-GMRNSNVMAIAPTATISNIAGTTQCTEPPFLLEYFKSN 659
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
L G + ++ + K L ES + Y
Sbjct: 660 LGGTYQVVDPAIAHVGDKYHLLKESYYVDQLY---------------------------- 691
Query: 642 WIIEAGSVRQKWIDQSQSLNIYI-SNKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
II+A +VRQKWIDQSQS N++ +G+ LD Y A GLKTTYYLR+ S
Sbjct: 692 -IIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGLKTTYYLRNQS 744
>gi|148273613|ref|YP_001223174.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147831543|emb|CAN02510.1| putative ribonucleoside-diphosphate reductase alpha subunit
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 834
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/707 (40%), Positives = 447/707 (63%), Gaps = 5/707 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
++ DP + V ARLL+ I K V G ++ + E+F++ I +G+D LL+ +L +
Sbjct: 70 VKDDPAFDTVAARLLLKTIYKRVLGDYSSPEELKRLHAEHFARNIQRGVDEMLLDSRLVQ 129
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNES 118
F+L L+ AL P D Y+G+ L +RY + G +E+PQ+F+MRIAMGL+LNE
Sbjct: 130 LFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYFWMRIAMGLTLNEQ 189
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
N + AI FY +S ++ + TL N+GTI QL++C++ + DD+ I ++ ++ L
Sbjct: 190 NPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDIEHIAKTTRDVMWL 249
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
+K GG+G +++R+ GSPI+ N S G IPF+ ++ V AV++GGK+ GA+C Y+E
Sbjct: 250 TKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALCFYME 309
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WH+D EF++LR+N+GD RRT N A+W+ D FMKRV W LF P +V DL+
Sbjct: 310 NWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDDDWFLFDPLEVSDLNEL 369
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+GK F E Y Y + + G+I++FK+I A ++ IL L T HPW+T+KD N R+
Sbjct: 370 YGKAFSERYAFYVAEAEAGRIRMFKRIKAREQFKSILISLQTTSHPWLTWKDTINNRALN 429
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
+ G IH SNLCTEITL ++ + VCNL SINL+ H +GK+D K++++ R+A+R LD
Sbjct: 430 NNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFAKIEQSARLAVRQLD 489
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
N+IDI +VK+A +SN ++R VGLG+MGF D + + Y S+E+ D+ ME + Y
Sbjct: 490 NLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGYSYESEESYDLIDEIMEHVSYA 549
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S +LA+E+G Y +++GS W +G++P DS+ L+E +RG +KVN + L+W LR
Sbjct: 550 AIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVP-VKVNRTTRLDWDALRA 608
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
++K GMRN+ +AIAPTA+I + G + ++P + + +S SG+F E+NR LVK+L+
Sbjct: 609 KVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVKDLQ 667
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+ G+W E++ N+ G++ I+ IPD ++ Y T+F++SP +E + QKWIDQ+
Sbjct: 668 ELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLEVAARAQKWIDQAI 726
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
S N+Y+ + + + Y W RG+KTTYYL + A++S ++
Sbjct: 727 SRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVKV 773
>gi|225873705|ref|YP_002755164.1| ribonucleoside-diphosphate reductase subunit alpha [Acidobacterium
capsulatum ATCC 51196]
gi|225791715|gb|ACO31805.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
capsulatum ATCC 51196]
Length = 792
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 314/758 (41%), Positives = 451/758 (59%), Gaps = 63/758 (8%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL+ I KEV G+ + FS+ I ++N AE
Sbjct: 89 IAEEPQYSKLAARLLLGTILKEVAGQNLHS----------FSQSIEYAHQEGVVNAATAE 138
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L+ A+ + +F + GL+ +YDRY L R IE PQ+FF+R+A GL+
Sbjct: 139 FVRTHARKLNYAIDEQLSDRFEFFGLRTVYDRYLLRDPLSRKVIETPQYFFLRVACGLAG 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKE 174
AI+FY L++S ++M S+PTLFNSGT Q+SSCYL P D L I+++ K+
Sbjct: 199 TPHE----AIEFYRLIASHDYMPSSPTLFNSGTKHPQMSSCYLHDSPSDSLESIYDTYKD 254
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
ALLSK++GG+G + +VRS GS I+ TNG S G++P+L+ ++ AVNQGGKRKGA C
Sbjct: 255 VALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSSVAAVNQGGKRKGACC 314
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH D+E+F+ELR+NTGD RRT+++N+A W+PDLFM+RV + W+LF P VP
Sbjct: 315 VYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFMRRVEEDGMWSLFDPKVVPQ 374
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLF-KKISALYLWRKILSMLFETGHPWITFKDACN 353
L + +G EF+ +Y E + +L+ ++I A L+ +++ L ETG+ W+TFKDACN
Sbjct: 375 LPDLYGVEFDAAYEKAEAE------QLYARQIKARDLYARMMRSLAETGNGWMTFKDACN 428
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
++ Q + ++H SNLCTEIT TS++E VCNLGSINL H+ NG D KL +T+R
Sbjct: 429 LKCNQTGKPGNVVHLSNLCTEITEVTSRDETAVCNLGSINLARHVANGAFDFEKLAETVR 488
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+ MLD VIDINYY V +A +N R RPVGLG+MG QD +++P+ S EA + +
Sbjct: 489 VAVPMLDRVIDINYYPVHQAASANSRWRPVGLGLMGLQDVFFQLRMPFDSPEAQQLSTHI 548
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y+A AS ELAE++G + ++ + G L D V ++
Sbjct: 549 QEEIYYHALAASCELAEKQGAHPAFAETRLAAGQLQFD------------LWGVKPADEA 596
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR RI++ G+RNS +AIAPTATI++I+G EP NL + LSGEF ++NR
Sbjct: 597 RWNTLRARIQQHGVRNSLLIAIAPTATIASIVGCYECTEPQVSNLFKRETLSGEFLQVNR 656
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV +LK++GLW+E + LK +G++ I IPDDL++IY T +E+ II+ R
Sbjct: 657 YLVTDLKERGLWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTVWELPMRAIIDLARERS 716
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
+IDQSQSLN++ + + +L Y AW GLKTTYYLRS A K+
Sbjct: 717 PFIDQSQSLNLFAESPNIGRLSSMYMYAWKSGLKTTYYLRSRPATRIAKTTVASA----- 771
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N + + + CE+CQ
Sbjct: 772 -----------------KNATAAVACSLENPGSCEACQ 792
>gi|344205622|ref|YP_004790763.1| ribonucleoside-diphosphate reductase subunit alpha
[Stenotrophomonas maltophilia JV3]
gi|343776984|gb|AEM49537.1| ribonucleoside-diphosphate reductase, alpha subunit
[Stenotrophomonas maltophilia JV3]
Length = 800
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 307/709 (43%), Positives = 438/709 (61%), Gaps = 40/709 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ +++G + L+N +L F
Sbjct: 93 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVSRGHEVGLINDRLLNFV 142
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 143 QTNARKLNDAIDGALDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
S + Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 203 SE----TLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 258
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 259 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 318
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RR H++N+A WVPDLFMKRV W+LF P VP+
Sbjct: 319 LETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFT 378
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE++Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 379 DLFGEAFEQAYLQAEAQGKANRT-----ISARKLYARMMRTLAETGNGWMTFKDKCNRAS 433
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL H ++ + D KL +T+R+A
Sbjct: 434 NQTLRAGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLA 493
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ +NLR RPVGLG MG QD ++P+ S EA + + E
Sbjct: 494 VRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAE 553
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S++ + G L D+ ++ + ++ W
Sbjct: 554 AIYFHALETSCELAQERGKHPSFNDTRAAGGELQFDAWNVVPE------------DTARW 601
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 602 DALRARIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 661
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G+++ +++IP+ LR++Y TA+E+ +I+ + R +
Sbjct: 662 VNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAF 721
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 722 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 770
>gi|28493650|ref|NP_787811.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
whipplei str. Twist]
gi|28572843|ref|NP_789623.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
whipplei TW08/27]
gi|28410976|emb|CAD67361.1| ribonucleotide-diphosphate reductase large chain [Tropheryma
whipplei TW08/27]
gi|28476692|gb|AAO44780.1| ribonucleotide reductase alpha chain [Tropheryma whipplei str.
Twist]
Length = 792
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 289/725 (39%), Positives = 446/725 (61%), Gaps = 5/725 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKL-A 59
++ DPVY +V RLL+ I + V G+ + + ++F FI KG++ +L+ +L
Sbjct: 68 VKDDPVYDRVATRLLLKSIYRSVLGEYKNCCQLRDLHVKHFRGFIEKGVEEGILDRRLDG 127
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNES 118
F+ LS AL P+RD F Y+GL L +RY + G +E+PQ+ +MRI+MGLS+ E
Sbjct: 128 RFDYDRLSRALDPQRDTLFKYIGLVTLNNRYGIRARSGKNLEVPQYLWMRISMGLSVLEK 187
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ A+KFY +S ++ + TL N+GT QLS+C++ + DD+ I ++ ++ LL
Sbjct: 188 DPTGSALKFYEKMSKLEYLAAGSTLVNAGTCTPQLSNCFVMEMQDDIEHIAKTTRDVMLL 247
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
+K GG+G T++R+ GSPI+ N RS G IPF+ ++ V AV++GGK+ GA+C Y+E
Sbjct: 248 TKGTGGIGLSVTKLRAQGSPIRSNNTRSTGPIPFMHTIDSVLRAVSRGGKKFGALCFYME 307
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WHMD EFI+LR+N+GD RRT N A+W+ D FMKRVI W LF P + PDL+
Sbjct: 308 NWHMDFPEFIDLRQNSGDPYRRTRTANTAVWISDEFMKRVINDREWYLFDPLETPDLNEL 367
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G EF + Y Y NQ + G++ +FKK+ A +R IL L T HPWITFKD N+R+
Sbjct: 368 YGAEFSKRYEYYVNQAEAGRLSMFKKLGAREQFRAILMSLQTTSHPWITFKDTINLRALN 427
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
+ G IH SNLCTEI L + + VCNL SINL+ H+ +G++D L+++ R+A+R LD
Sbjct: 428 NNTGTIHLSNLCTEICLPQDRENVSVCNLASINLSRHLIDGEIDWQLLEESTRLAVRQLD 487
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
N+IDI +VK++ SN +R +GLGIMGF + + + Y S++A D+ ME I +
Sbjct: 488 NLIDITCSSVKESDNSNNLNRAIGLGIMGFTNLIERLGYSYESEQAFDLIDRLMEQISFV 547
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A S LAEE+G Y ++ GS W +G+LP DS+K++ + RG + VN S L+W LR
Sbjct: 548 AIDESCNLAEERGPYKNFHGSRWSKGMLPIDSIKIVSQNRGVP-VSVNTSYRLDWDSLRK 606
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
R++ G+RN+ +AIAPTA+I + G + ++P + + +S G+F E+N LV +LK
Sbjct: 607 RVRN-GIRNATLLAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSFGKFLEVNENLVLDLK 665
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW E + ++ GN+ QI IP +++ Y T+F++SP ++ + QKW+DQ+
Sbjct: 666 RRGLW-ERVREDILRSQGNIQQIDAIPGEIKANYKTSFQLSPYAFVQVAARAQKWVDQAI 724
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
S N+Y+ ++ + Y AW GLKTTYYL + A++S ++ + +
Sbjct: 725 SRNMYLESRDISDMVSVYTTAWEMGLKTTYYLHMKPRHQAEQSTVKVNKRTEGGNRRGFA 784
Query: 719 GYNKN 723
G++KN
Sbjct: 785 GFSKN 789
>gi|456737525|gb|EMF62220.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Stenotrophomonas maltophilia EPM1]
Length = 800
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 307/709 (43%), Positives = 438/709 (61%), Gaps = 40/709 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ +++G + L+N +L F
Sbjct: 93 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVSRGHEVGLINDRLLNFV 142
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 143 QTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
S + Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 203 SE----TLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 258
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 259 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 318
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RR H++N+A WVPDLFMKRV W+LF P VP+
Sbjct: 319 LETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFT 378
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE +Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 379 DLFGEAFEAAYLQAEAQGKANRT-----ISARKLYARMMRTLAETGNGWMTFKDKCNRAS 433
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL H ++ + D KL +T+R+A
Sbjct: 434 NQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLA 493
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ +NLR RPVGLG MG QD ++P+ S EA + + E
Sbjct: 494 VRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRMPFDSAEARALSKKIAE 553
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S++ + G L D+ ++ + ++ W
Sbjct: 554 AIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE------------DTARW 601
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR+RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 602 DALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 661
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G+++ +++IP+ LR++Y TA+E+ +I+ + R +
Sbjct: 662 VNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAF 721
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 722 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 770
>gi|254521985|ref|ZP_05134040.1| ribonucleoside-diphosphate reductase, alpha subunit
[Stenotrophomonas sp. SKA14]
gi|219719576|gb|EED38101.1| ribonucleoside-diphosphate reductase, alpha subunit
[Stenotrophomonas sp. SKA14]
Length = 800
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 306/708 (43%), Positives = 437/708 (61%), Gaps = 40/708 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ +++G + L+N +L F
Sbjct: 93 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVSRGHEVGLINDRLLNFV 142
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 143 QTNARKLNDAIDGALDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
S + Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 203 SE----TLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 258
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 259 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 318
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH D+E+F+ELR NTGD+ RR H++N+A WVPDLFMKRV W+LF P VP+
Sbjct: 319 LETWHADVEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFT 378
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE +Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 379 DLFGEAFEAAYLQAEAQGKANRT-----ISARKLYARMMRTLAETGNGWMTFKDKCNRAS 433
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL H ++ + D KL +T+R+A
Sbjct: 434 NQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLA 493
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ +NLR RPVGLG MG QD ++P+ S EA + + E
Sbjct: 494 VRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAE 553
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S++ + G L D+ ++ + ++ W
Sbjct: 554 AIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE------------DTARW 601
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 602 DALRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 661
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G+++ +++IP+ LR++Y TA+E+ +I+ + R +
Sbjct: 662 VNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAF 721
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 722 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKT 769
>gi|408825289|ref|ZP_11210179.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
geniculata N1]
Length = 800
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 307/709 (43%), Positives = 437/709 (61%), Gaps = 40/709 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ +++G + L+N +L F
Sbjct: 93 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVSRGHEVGLINDRLLNFV 142
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 143 QTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
S + Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 203 SE----TLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 258
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 259 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 318
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RR H++N+A WVPDLFMKRV W+LF P VP+
Sbjct: 319 LETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFT 378
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE +Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 379 DLFGEAFEAAYLQAEAQGKANRT-----ISARKLYARMMRTLAETGNGWMTFKDKCNRAS 433
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL H ++ + D KL +T+R+A
Sbjct: 434 NQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLA 493
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ +NLR RPVGLG MG QD ++P+ S EA + + E
Sbjct: 494 VRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAE 553
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S++ + G L D+ ++ + ++ W
Sbjct: 554 AIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE------------DTARW 601
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 602 DALRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 661
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G+++ +++IP+ LR++Y TA+E+ +I+ + R +
Sbjct: 662 VNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAF 721
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 722 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 770
>gi|386716673|ref|YP_006182999.1| ribonucleotide reductase subunit alpha [Stenotrophomonas
maltophilia D457]
gi|384076235|emb|CCH10816.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Stenotrophomonas maltophilia D457]
Length = 800
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 307/709 (43%), Positives = 438/709 (61%), Gaps = 40/709 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ +++G + L+N +L F
Sbjct: 93 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVSRGHEVGLINDRLLNFV 142
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 143 QTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
S + Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 203 SE----TLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 258
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 259 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 318
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RR H++N+A WVPDLFMKRV W+LF P VP+
Sbjct: 319 LETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFT 378
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE++Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 379 DLFGEAFEQAYLQAEAQGKANRT-----ISARKLYARMMRTLAETGNGWMTFKDKCNRAS 433
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL H ++ + D KL +T+R+A
Sbjct: 434 NQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLA 493
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ +NLR RPVGLG MG QD ++P+ S EA + + E
Sbjct: 494 VRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAE 553
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S++ + G L D+ ++ + ++ W
Sbjct: 554 AIYFHALETSCELAQERGKHPSFNDTRAAGGELQFDAWNVVPE------------DTARW 601
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 602 DALRARIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 661
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G+++ +++IP+ LR++Y TA+E+ +I+ + R +
Sbjct: 662 VNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAF 721
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 722 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 770
>gi|190572322|ref|YP_001970167.1| ribonucleoside-diphosphate reductase large subunit
[Stenotrophomonas maltophilia K279a]
gi|190010244|emb|CAQ43852.1| putative ribonucleoside-diphosphate reductase large subunit
[Stenotrophomonas maltophilia K279a]
Length = 775
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 307/708 (43%), Positives = 438/708 (61%), Gaps = 40/708 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ +++G + L+N +L F
Sbjct: 68 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVSRGHEVGLINDRLLNFV 117
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 118 QTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 177
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
S + Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 178 SE----TLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 233
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 234 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 293
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RR H++N+A WVPDLFMKRV W+LF P VP+
Sbjct: 294 LETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFT 353
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE +Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 354 DLFGEAFEAAYLQAEAQGKANRT-----ISARKLYARMMRTLAETGNGWMTFKDKCNRAS 408
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL H ++ + D KL +T+R+A
Sbjct: 409 NQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLA 468
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ +NLR RPVGLG MG QD ++P+ S EA + + E
Sbjct: 469 VRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAE 528
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S++ + G L D+ ++ + ++ W
Sbjct: 529 AIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE------------DTARW 576
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR+RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 577 DALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 636
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G+++ +++IP+ LR++Y TA+E+ +I+ + R +
Sbjct: 637 VNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAF 696
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 697 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKT 744
>gi|424666639|ref|ZP_18103665.1| ribonucleoside-diphosphate reductase, alpha subunit
[Stenotrophomonas maltophilia Ab55555]
gi|401070085|gb|EJP78603.1| ribonucleoside-diphosphate reductase, alpha subunit
[Stenotrophomonas maltophilia Ab55555]
Length = 800
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 307/709 (43%), Positives = 437/709 (61%), Gaps = 40/709 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ +++G + L+N +L F
Sbjct: 93 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVSRGHEVGLINDRLLNFV 142
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 143 QTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
S + Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 203 SE----TLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 258
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 259 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 318
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RR H++N+A WVPDLFMKRV W+LF P VP+
Sbjct: 319 LETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFT 378
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE +Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 379 DLFGEAFEAAYLQAEAQGKANRT-----ISARKLYARMMRTLAETGNGWMTFKDKCNRAS 433
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL H ++ + D KL +T+R+A
Sbjct: 434 NQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLA 493
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ +NLR RPVGLG MG QD ++P+ S EA + + E
Sbjct: 494 VRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAE 553
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S++ + G L D+ ++ + ++ W
Sbjct: 554 AIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE------------DTARW 601
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 602 DALRARIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 661
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G+++ +++IP+ LR++Y TA+E+ +I+ + R +
Sbjct: 662 VNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAF 721
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 722 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 770
>gi|168702495|ref|ZP_02734772.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemmata
obscuriglobus UQM 2246]
Length = 797
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 305/758 (40%), Positives = 432/758 (56%), Gaps = 61/758 (8%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL + KEV +++ FS+ I G + L+
Sbjct: 92 ISEEPEYSRLAARLLATYVDKEVANQDVHS----------FSQSIAAGYRHGLVAGGTMA 141
Query: 61 FNLS----LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLS 114
F + L + A P DL F Y GL+ +YDRY L R IE P FFF+R+A GL+
Sbjct: 142 FVAANARKLNAAAAEPAPDL-FEYFGLRTVYDRYLLRHPDTRHVIETPAFFFLRVACGLA 200
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
+ ++ AI+ Y L+S+ ++ STPTLFNSGT R Q+SSCYL P D L I++
Sbjct: 201 ESAAD----AIELYRLMSAHRYLPSTPTLFNSGTARPQMSSCYLLDSPADALEAIYDRYA 256
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G + ++RS GS I+GTNG S G++P+LK ++ AVNQGGKRKGA
Sbjct: 257 DVAKLSKFAGGIGLAYHRIRSRGSLIRGTNGHSNGIVPWLKTLDSSVAAVNQGGKRKGAC 316
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
C YLETWH D+EEF+ELR NTGD RRT+++N+A WVPDLFM+RV W+LF P VP
Sbjct: 317 CVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLFMRRVEAGEPWSLFDPKAVP 376
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
L + FG F+ +Y E K K + A L+ +++ L ETG+ W+TFKDACN
Sbjct: 377 HLTDLFGAAFDAAYTDAE-----AKGLAVKSVPARDLYARMMKTLAETGNGWMTFKDACN 431
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
Q + ++HSSNLCTEI TS E VCNLGS+NL H+ D L +T+R
Sbjct: 432 RACNQTAEPGAVVHSSNLCTEIVEVTSAGETAVCNLGSVNLARHVTRDGFDFAALAETVR 491
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+R LD V+D+N+Y +A SN R RPVGLG+MG QD +K+P+ + A + + +
Sbjct: 492 TAVRFLDRVVDVNFYPTPEAAASNARWRPVGLGVMGLQDVFFKLKLPFDAPAARELSRRI 551
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y+A S ELA +G + S+ + G+L D V ++
Sbjct: 552 QEEIYYHALATSCELAAARGPHPSFASTRAAAGVLQFD------------LWGVEPTDPA 599
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR R++ G+RNS VAIAPTATI++I+G +EP NL + LSGEF ++NR
Sbjct: 600 RWAALRERVRTTGLRNSLLVAIAPTATIASIVGAYECVEPQVSNLFKRETLSGEFLQVNR 659
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV +LK GLW +++ +K DG++ +S +P LR +Y TA+E+ +I+ + R
Sbjct: 660 YLVDDLKALGLWTDAVRTKIKLADGSVQSLSELPAGLRAVYRTAWEVPQRGLIDMAAERG 719
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
+IDQSQSLN+++ + + K+ Y AW +GLKTTYYLRS A K+ +
Sbjct: 720 PFIDQSQSLNLFLESPTIGKMSSMYMHAWKKGLKTTYYLRSRPATAIAKTTVTPTAAPAD 779
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S + + CE+CQ
Sbjct: 780 TSAVSCS--------------------LENPGACEACQ 797
>gi|162452148|ref|YP_001614515.1| ribonucleoside-diphosphate reductase [Sorangium cellulosum So ce56]
gi|161162730|emb|CAN94035.1| Ribonucleoside-diphosphate reductase [Sorangium cellulosum So ce56]
Length = 838
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/759 (41%), Positives = 447/759 (58%), Gaps = 44/759 (5%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF-- 61
+P Y+++ ARLL I KEV +EI FS+ + G L+N +L F
Sbjct: 111 EPQYAKLAARLLATYIDKEVRNQEIHA----------FSQSVAVGRRLGLINDRLHGFVA 160
Query: 62 -NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNES 118
N L++A+ P RD + Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 161 QNARKLNDAIEPARDHELEYFGLRTLYDRYLLKHPETRLVIETPQQFFLRIACALSETAA 220
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
A++ Y L SS +++ S+PT+FNSGT QLSSC+L PDD L I++ + A+
Sbjct: 221 Q----AVELYRLFSSLDYLPSSPTMFNSGTSHEQLSSCFLLDSPDDHLETIYQRYTDVAM 276
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK++GG+G + +VRS GS I+ TNG S G++P+LK ++ AVNQGGKRKGA C YL
Sbjct: 277 LSKFSGGIGLAYHRVRSRGSLIRATNGHSSGIVPWLKTLDASVAAVNQGGKRKGACCVYL 336
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH D+EEF+ LR NTGD+ RTH++N+A WVPDLFMKRV W+LF P D DL +
Sbjct: 337 EPWHADVEEFLSLRDNTGDEAARTHNLNLASWVPDLFMKRVEADGDWSLFDPKDARDLPD 396
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE Y+ E + L K K + A L+ +++ L +TG+ W+TFKD N
Sbjct: 397 LYGEEFERRYVEAE-RAGLAK----KTMKARELYARMMRTLAQTGNGWMTFKDKSNRACN 451
Query: 358 QQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH---MKNGKL--DPIKLKKTI 410
Q + I+H SNLCTEI TS E VCNLGSINL H + +G + D KL +T+
Sbjct: 452 QTALPGRIVHLSNLCTEILEVTSNEESAVCNLGSINLARHTATLADGAVAFDFEKLARTV 511
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
R A+R LD VID+NYY + + SNLR RPVGLG+MG QD M++P+ + A + + +
Sbjct: 512 RTAVRQLDRVIDLNYYPIPSTRRSNLRWRPVGLGLMGLQDVFFQMRLPFDAPAARELSRR 571
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E + Y+A S +LA EKGR+ ++D + +G L D+ + + ++
Sbjct: 572 ISEEVYYHALSTSADLAAEKGRHPAFDETRAARGELQFDAWGAVPE------------DA 619
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
W+ LR R++ G+RNS VAIAPTATI++I G IEP NL + LSG+F ++N
Sbjct: 620 ARWEALRARVQAEGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQMN 679
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
RYLV ELK+ G W++++ A LK +G++ + +P+ +R ++ TA+EI +I+ + R
Sbjct: 680 RYLVAELKRLGAWNDAVRARLKLAEGSVQGMDELPEQIRAVFRTAWEIPMRSLIDMAADR 739
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSV 710
+IDQSQSLN++I N + +L Y AW +GLKTTYYLRS A K+ E D
Sbjct: 740 GAFIDQSQSLNLFIENPTIGQLSSMYFHAWKKGLKTTYYLRSRPATRIAKATVEAPPDRT 799
Query: 711 NLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
D+ + + + + + + CE+CQ
Sbjct: 800 PGDDAAPRREGGWVPAPPAKAAADVACALENPEACEACQ 838
>gi|383454420|ref|YP_005368409.1| ribonucleoside-diphosphate reductase subunit alpha [Corallococcus
coralloides DSM 2259]
gi|380733635|gb|AFE09637.1| ribonucleoside-diphosphate reductase subunit alpha [Corallococcus
coralloides DSM 2259]
Length = 823
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/755 (41%), Positives = 455/755 (60%), Gaps = 45/755 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y++++ARLL IQKEV ++I+ FS+ + G + L+ +L F
Sbjct: 106 EEPEYARLSARLLSTFIQKEVSNQDIQS----------FSQSVAAGHKHGLIADRLLTFV 155
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L+ A+ P R+ F Y GL+ +YDRY L R IE PQ FF+R+A LS +
Sbjct: 156 QANARKLNAAIDPVRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQDFFLRVACALS-GD 214
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ RE AI+ Y L SS ++ S+PTLFNSGT QLSSC+L P D+L I++ + A
Sbjct: 215 NARE--AIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPADELDAIYKKYSDIA 272
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + +VR+ GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 273 MLSKFSGGIGVGYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGACCVY 332
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RR H++N+A WVPDLFM+RV W+LF P P L
Sbjct: 333 LETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMRRVEADQEWSLFDPKTTPHLT 392
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG F+++Y+ E Q + +K+ A L+ +++ +L +TG+ W+TFKD N +S
Sbjct: 393 DLFGDAFDKAYVAAEAQG-----QAVRKVKARDLYARMMKVLAQTGNGWMTFKDISNRKS 447
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q Q +IH SNLCTEI TS+ E VCNLGS+NL +K+GK D L+ +A+
Sbjct: 448 NQTGQPGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLGRMVKDGKFDFDLLRSNAMLAL 507
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ LD VID+NYY + A SN R RPVGLG+MG QD +++P+ S EA + + E
Sbjct: 508 KQLDRVIDLNYYPIPTAADSNRRWRPVGLGLMGLQDVFFQLRLPFDSVEARNLSKKISEE 567
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A S++LAE+ G + S+ + +G L DS ++ + ++L W
Sbjct: 568 IYYAALVTSSDLAEQFGAHPSFPETRAAKGELQFDSWGIVPE------------DTLRWD 615
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR+RI K G+RNS +AIAPTATI++I G IEP NL + LSG+F ++NRYLV
Sbjct: 616 ALRSRIMKVGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLV 675
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L++ GLW+E+ +K +G++ ++ +P++LR IY TA+EI +++ G+ R +I
Sbjct: 676 RDLQQLGLWNENTRNRIKLAEGSVQDLTELPEELRAIYRTAWEIPMRSLLDMGADRGAFI 735
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN+++ + KL Y AW +GLKTTYYLRS A K+ G ++
Sbjct: 736 DQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATVGQGGPTITAAP 795
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
Q + + + S + + CE+CQ
Sbjct: 796 TPAP------QTVTAEAEAVACS-LENPEACEACQ 823
>gi|352086177|ref|ZP_08953756.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodanobacter
sp. 2APBS1]
gi|351679811|gb|EHA62945.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodanobacter
sp. 2APBS1]
Length = 806
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 305/716 (42%), Positives = 422/716 (58%), Gaps = 37/716 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y Q+ ARLL I KEV G+EI+ +S+ I +G + LLN +L +F
Sbjct: 100 EEPEYGQLAARLLGAYIDKEVSGQEIQS----------YSQSIARGTELGLLNERLRDFV 149
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ P F Y GL+ +YDRY L R IE PQ FFMRIA L NE
Sbjct: 150 AANTRKLNDAIDPLASRHFEYFGLRTVYDRYLLRHPQRRLVIETPQHFFMRIACALGGNE 209
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
++ Y LLSS ++ S+PTLFN+GT QLSSCYL P D L I++ + A
Sbjct: 210 IGE---TLELYRLLSSLEYLASSPTLFNAGTAHEQLSSCYLLDSPRDSLESIYDKYADVA 266
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK+AGG+G +++VRS GS I+GTNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 267 KLSKFAGGIGLAYSRVRSRGSLIRGTNGHSNGLVPWLKTLDASVAAVNQGGKRKGAACVY 326
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE+WH DI++F+ELR NTGDD RR H++NIA W+PD FM+RV W+LF P VP
Sbjct: 327 LESWHADIKDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGEWSLFDPKVVPHFV 386
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ F+ +Y E K + A L+ +++ L +TG+ W+TFKD CN S
Sbjct: 387 DSWGEAFDAAYRKAEADG-----LAVKTVKARELYARMMRTLAQTGNGWMTFKDRCNATS 441
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI +S E VCNLGS+NL H+ +G D +L T+RIA+
Sbjct: 442 NQTAKPGNVIHLSNLCTEILEVSSATETAVCNLGSVNLARHVVDGAFDFDQLAATVRIAV 501
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID+NYY + A+ +N++ RPVGLG+MG QD +++P+ S EA+ + + E
Sbjct: 502 RQLNRVIDLNYYPIDTARTANMKWRPVGLGVMGLQDVFFKLRLPFDSAEALALSTRIAEE 561
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S ELAE +G + + S G L D G++ W
Sbjct: 562 IYFNALSQSCELAEAEGAHPGFAESRAANGELQFDHWPSAIPHDGAR-----------WN 610
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RIK+ G+RNS +AIAPTATI++I G IEP NL + LSG+F ++NRYL
Sbjct: 611 ALRERIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLA 670
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK GLW + +K +G++ I+ IP+ LR+IY T +E+ +I+ + R WI
Sbjct: 671 DELKTLGLWTSEIRDAIKLAEGSIQGIAAIPERLRQIYRTVWELPQKSLIDLAAARGAWI 730
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSV 710
DQSQSLN+++ N + +L Y AW G+KTTYYLRS A K+ D
Sbjct: 731 DQSQSLNLFMENPNIGQLSSMYMYAWKAGIKTTYYLRSRPATKIAKTTVSAASDQA 786
>gi|194363984|ref|YP_002026594.1| ribonucleoside-diphosphate reductase subunit alpha
[Stenotrophomonas maltophilia R551-3]
gi|194346788|gb|ACF49911.1| ribonucleoside-diphosphate reductase, alpha subunit
[Stenotrophomonas maltophilia R551-3]
Length = 803
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 306/709 (43%), Positives = 428/709 (60%), Gaps = 40/709 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL I KEV G+EI FS+ + +G + L+N +L F
Sbjct: 93 EEPEYGRLAARLLANYIAKEVSGQEIYA----------FSQSVGRGHEVGLINDRLLNFV 142
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ DL F+Y GL+ LYDRY L R IE PQ FF+RIA LS +
Sbjct: 143 QTNARKLNDAIDMSLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALSEDV 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
A+ Y + + +++ S+PTLFNSGT QLSSC+L P D L I+ + A
Sbjct: 203 PE----ALALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIA 258
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +T+VRS GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 259 QLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVY 318
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH D+E+F+ELR NTGD+ RR H++N+A W+PDLFMKRV W+LF P VP+
Sbjct: 319 LETWHADVEDFLELRDNTGDESRRAHNLNLANWIPDLFMKRVEADQEWSLFDPRVVPEFT 378
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG+ FE +Y+ E Q K + ISA L+ +++ L ETG+ W+TFKD CN S
Sbjct: 379 DLFGEAFEAAYLQAEAQGKANRT-----ISARKLYSRMMRTLAETGNGWMTFKDKCNRAS 433
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS E VCNLGSINL H NG+ D KL T+R+A
Sbjct: 434 NQTLRAGNVIHLSNLCTEILEVTSAEETAVCNLGSINLGNHFDGNGEFDFDKLADTVRLA 493
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+R LD VID+N+Y ++ A+ NLR RPVGLG MG QD ++P+ EA + + E
Sbjct: 494 VRQLDRVIDLNFYPIESARRGNLRWRPVGLGCMGLQDVFFRKRLPFDGAEARALSKKIAE 553
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+E+G++ S+ + G L D+ ++ + ++ W
Sbjct: 554 TIYFHALETSVELAQERGKHPSFADTRAASGELQFDAWNVVPE------------DAERW 601
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR RIK+ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 602 DSLRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYL 661
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK G W M +K +G++ I++IP+ LR +Y TA+E+ +I+ + R +
Sbjct: 662 VNELKKLGHWTPEMRDAIKLAEGSIQGITQIPETLRHVYRTAWELPMRSLIDMAADRGAF 721
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
IDQS SLN+++ + + + Y AW +G+KTTYYLRS A K+
Sbjct: 722 IDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 770
>gi|330467633|ref|YP_004405376.1| ribonucleoside-diphosphate reductase subunit alpha [Verrucosispora
maris AB-18-032]
gi|328810604|gb|AEB44776.1| ribonucleoside-diphosphate reductase, alpha subunit [Verrucosispora
maris AB-18-032]
Length = 791
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 299/755 (39%), Positives = 438/755 (58%), Gaps = 55/755 (7%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL + KEV G+++ I+Y L+ A F
Sbjct: 84 EEPQYSRLAARLLAAFVDKEVRGQQVASFSQSIRYAHGLG----------LIGDATAAFV 133
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L +A+ P DL+F Y GL+ + DRY L R +E PQ++ +R+A GLS
Sbjct: 134 ARNARKLDDAVDPAGDLRFEYFGLRTVADRYLLRHPQTRQVVETPQYWLLRVACGLSQTP 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
AI FY L+SS ++ S+PTLFNSGT +Q+SSC+L P D+L I+E + A
Sbjct: 194 GE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYERYHQVA 249
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G WT+VR G+ I+GTNGRS G++PFLK ++ AVNQGG+RKGA C Y
Sbjct: 250 KLSKFSGGIGISWTRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVY 309
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DIEEF+ELR NTG++ RRTH++N+A W+PD FM+RV W+L P D P+L
Sbjct: 310 LEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLIDPSDAPELP 369
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ F+E+Y + + K + + A L+ +++ L +TG+ W+TFKDA N S
Sbjct: 370 DLYGEAFDEAY-------RAAEKKAVRTVKARDLYGRMMRTLAQTGNGWMTFKDAANRLS 422
Query: 357 PQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q IH SNLCTEI + E VCNLGSINL H+ +D KL+ T+R A+
Sbjct: 423 NQTGAPGNTIHLSNLCTEILEVNNDTETAVCNLGSINLAAHLTADGIDWEKLRATVRTAV 482
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD VIDINYY ++A SN R RPVGLG+MG QD +++P+ S A + + + E
Sbjct: 483 LFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAFFTLRMPFDSTPARELSSRVQEE 542
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I A S +LA++ G + +YD + +G L D +++++ W
Sbjct: 543 ILLTALETSAQLAQQFGPHPAYDDTRAARGELHPD------------LWGADLTQAQRWA 590
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR I G+RNS VAIAPTATI++I G IEP NL + +SGEF +IN YLV
Sbjct: 591 ALRETIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTYLV 650
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK +GLW S+ +K +G++ I+ +P+D+R+++ TA+E+ +I+ + R +I
Sbjct: 651 RELKARGLWTASIREQIKRAEGSVQGIAELPEDVRQLFRTAWELPQRALIDLAAARAPFI 710
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN++IS + KL Y AW GLKTTYYLRS A +++
Sbjct: 711 DQSQSLNLFISAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQAT------------ 758
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+++ + + +++ + + + CE+CQ
Sbjct: 759 VAVTPAAPAIVAVGDDEA--LACSLENPESCEACQ 791
>gi|50955340|ref|YP_062628.1| ribonucleotide-diphosphate reductase subunit alpha [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951822|gb|AAT89523.1| ribonucleoside-diphosphate reductase, alpha chain [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 896
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 284/718 (39%), Positives = 443/718 (61%), Gaps = 16/718 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQID-----IPIKYKEYFSKFINKGIDNKLLN 55
++ DP + V ARLL+ I K V G D + + +F +I +G+ LL+
Sbjct: 129 VKDDPAFDIVAARLLLKIIYKRVLGDYASGTDGDNAELVELHARHFRGYIERGVSETLLD 188
Query: 56 PKLAE-FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGL 113
+ F+L L+ L P RD Y+G+ L +RY + G +E+PQ+F+MRIAMGL
Sbjct: 189 SRFTGLFDLDRLAGHLDPSRDELLKYIGVVTLNNRYGIKARNGDSLEVPQYFWMRIAMGL 248
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIK 173
SLNE++ AI FY+ +S ++ + TL N+GT QLS+C++ + DD+ I +S++
Sbjct: 249 SLNETDPTSHAIAFYHKMSKLEYLAAGSTLVNAGTAYPQLSNCFVMEMQDDIEHIAKSVR 308
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ L+K GG+G T++RS GSPI+ N S G IPF+ ++ V AV++GGK+ GA+
Sbjct: 309 DVMWLTKGTGGIGLSVTKLRSQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGAL 368
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
C Y+E WH+D EF++LR+N+GD RRT N A+W D FMKRV W LF P +V
Sbjct: 369 CFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWTSDEFMKRVQNDQDWYLFDPLEVA 428
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
DL+ +GK F E Y Y + G++++FKKISA ++ IL L T HPW+T+KD N
Sbjct: 429 DLNELYGKAFSERYAEYAVMAEAGELRMFKKISARAQFKDILMSLQTTSHPWLTWKDTIN 488
Query: 354 IRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG------KLDPIKLK 407
R+ + G IH SNLCTEITL ++ + VCNL SINL+ H+ +G ++D +L+
Sbjct: 489 NRALNNNTGAIHLSNLCTEITLPQDRDNVSVCNLASINLSRHLVDGERANGLEMDWARLE 548
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
++ R A+R LDN+IDI +V +A +SN ++R +GLG+MGF D + + Y S+EA
Sbjct: 549 ESARQAVRQLDNLIDITVSSVPEADFSNQQNRAIGLGVMGFTDVVERLGFSYESEEAYAL 608
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
D+ ME + Y A S +LA+E+G Y +++GS W QG++P DS+ L E +RG + V+
Sbjct: 609 IDEIMEHVSYAAIDESADLAQERGAYPNFEGSRWSQGLVPYDSIALAEADRGIP-ITVDR 667
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
+ L+W +LR ++K GMRN+ +AIAPTA+I + G + +P + + +S SG+F
Sbjct: 668 TIRLDWDRLREKVKG-GMRNATLMAIAPTASIGLVAGTTPGFDPQFSQIFSRSTSSGKFL 726
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
E+NR LV+ L+++GLW+E+ + L+ G++ I+ IPD+++ + T+F++SP+ IE
Sbjct: 727 EVNRNLVEALQERGLWEETRESILRS-QGDIQGIAAIPDEIKAAFKTSFQLSPHAFIEVA 785
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
+ QKWIDQ+ S N+Y+ + + + Y AW +G+KTTYYL + A++S ++
Sbjct: 786 ARAQKWIDQAISRNMYLETRDIGDMMDIYAAAWEKGVKTTYYLHMKPRHQAEQSTVKV 843
>gi|405354038|ref|ZP_11023447.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Chondromyces apiculatus DSM 436]
gi|397092729|gb|EJJ23478.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Myxococcus sp. (contaminant ex DSM 436)]
Length = 837
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 305/712 (42%), Positives = 435/712 (61%), Gaps = 38/712 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y +++ARLL IQKEV ++I FS+ I G + L+ +L +F
Sbjct: 120 EEPEYGRLSARLLATFIQKEVSNQDIHS----------FSQSIAAGHKHGLIADRLLQFV 169
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L+ A+ P R+ F Y GL+ +YDRY L R +E PQ FF+R+A LS +
Sbjct: 170 QANARKLNAAIDPTRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQEFFLRVASALSGDN 229
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
N AI+ Y L SS ++ S+PTLFNSGT QLSSC+L P D+L I++ + A
Sbjct: 230 VNE---AIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPADELDAIYKKYSDIA 286
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + +VR+ GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 287 MLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGACCVY 346
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR+NTGDD RRTH++N+A WVPDLFMKRV W+LF P VP
Sbjct: 347 LETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFDPKTVPHFT 406
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G FE++Y E +K+ A L+ +++ L +TG+ W+TFKD N +S
Sbjct: 407 DLYGDAFEQAYAKAEADG-----LAMRKVKARDLYARMMKSLAQTGNGWMTFKDISNRKS 461
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI TS+ E VCNLGS+NL +K+GK D +L+ ++AM
Sbjct: 462 NQTGKDGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLGRMVKDGKFDFERLRANAQLAM 521
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LD VID+NYY + A SN R RPVGLG+MG QD +K+ + + EA + + Q E
Sbjct: 522 RQLDRVIDLNYYPIPTAASSNQRWRPVGLGLMGLQDVFFQLKLAFDAPEARELSKQISEE 581
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S E+AE+ G ++S+ + +G L D + V ++ W
Sbjct: 582 IYFAALTTSCEMAEQYGAHTSFPETRAAKGELQFD------------HWGVVPTDMARWD 629
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI K G+RNS +AIAPTATI++I+G IEP NL + LSG+F ++NRYLV
Sbjct: 630 ALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLSGDFLQVNRYLV 689
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L+ GLW+E++ +K +G++ I+ +P++LR +Y TA+E+ +++ G+ R +I
Sbjct: 690 RDLQALGLWNENVRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSLLDMGADRGAFI 749
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQSQSLN+++ + KL Y AW +GLKTTYYLRS A K+ G
Sbjct: 750 DQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATVGAG 801
>gi|389730177|ref|ZP_10189352.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
sp. 115]
gi|388440949|gb|EIL97269.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
sp. 115]
Length = 856
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 311/756 (41%), Positives = 433/756 (57%), Gaps = 49/756 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y Q+ ARLL I KEV G+EI+ FS+ + G + +LN +L +F
Sbjct: 141 EEPEYGQLAARLLGAYIDKEVTGQEIQS----------FSQSVAHGAELGILNERLRDFV 190
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRI--EMPQFFFMRIAMGLSLNE 117
N L++A+ P +F Y GL+ +YDRY L R E PQ+FFMRIA L N+
Sbjct: 191 ATNARKLNDAIDPLATRRFEYFGLRTVYDRYLLRHPQKRFVTETPQYFFMRIACALGGND 250
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
++ Y +LSS ++ S+PTLFN+GT QLSSC+L P D L I++ + A
Sbjct: 251 IAE---TLELYRMLSSLEYIASSPTLFNAGTAHEQLSSCFLLDSPTDSLESIYDKYADVA 307
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK+AGG+G +++VRS GS IKGTNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 308 KLSKFAGGIGLAYSRVRSRGSLIKGTNGHSNGLVPWLKTLDASVAAVNQGGKRKGAACVY 367
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIEEF+ELR NTGD+ RR H++N+A W+PD FM+RV W+LF P VP
Sbjct: 368 LETWHADIEEFLELRDNTGDEARRAHNLNLANWIPDEFMRRVETDGDWSLFDPKVVPHFV 427
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ FE +Y E + K + A L+ ++L L +TG+ W+TFKD CN S
Sbjct: 428 DSWGETFETAYRKAEAEGLAAKT-----VKARDLYARMLRTLAQTGNGWMTFKDRCNATS 482
Query: 357 PQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q +IH SNLCTEI T+ E VCNLGSINL+ H+ +G +D KL T+R A+
Sbjct: 483 NQTAKADNVIHLSNLCTEILEVTNAGETAVCNLGSINLSRHVIDGAVDYDKLATTVRTAV 542
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID+N+Y + A +N + RPVGLG+MG QD +++P+ S EA+ + + E
Sbjct: 543 RQLNRVIDLNFYPIDTAATANRKWRPVGLGVMGLQDVFFKLRLPFDSAEALALSSRIAEE 602
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A S ELAE +G + + S G L D + + W
Sbjct: 603 IYFHALSQSNELAEAEGAHPGFAESRAASGDLQFD-----------HWPNAKPHDDARWN 651
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR IK G+RNS +AIAPTATI++I G IEP NL + LSG+F +NRYLV
Sbjct: 652 ALRENIKAKGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLVVNRYLV 711
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK GLW + +K +G++ I+ IP+ LR+IY T +E+ +IE G+ R +I
Sbjct: 712 DELKTLGLWTSEVRDAIKLAEGSIQGITAIPERLRQIYRTVWELPQKALIELGAARGAYI 771
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN+++ N + +L Y AW G+KTTYYLRS A K+ G
Sbjct: 772 DQSQSLNLFMENPNIGQLSSMYMYAWKAGIKTTYYLRSRPATKIAKTTVSAG-------- 823
Query: 715 ISIKGYNKNLQEI-KNNKKCLINSEINDVNECESCQ 749
K K I ++ + + + CE+CQ
Sbjct: 824 ---KAEAKAAPAIDQDQASAAVFCSLENPEYCEACQ 856
>gi|444917550|ref|ZP_21237645.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Cystobacter fuscus DSM 2262]
gi|444710891|gb|ELW51852.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Cystobacter fuscus DSM 2262]
Length = 796
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 317/762 (41%), Positives = 447/762 (58%), Gaps = 66/762 (8%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y+++ ARLL I KE+ G+E+ FS+ I L+N ++A+
Sbjct: 86 EEPEYARLAARLLATYIDKELSGQEVHS----------FSQSIAAAHRLGLVNERVAQLV 135
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++++ P R+ F Y GL+ +YDRY L R +E PQ FFMRIA ++L E
Sbjct: 136 AANARKLNDSIDPTRNRLFEYFGLRTVYDRYLLKHPTTRAVLETPQHFFMRIA--VALGE 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYG-IFESIKENA 176
+ E A++ Y S ++ S+PTLFNSGT QLSSC+L P+D G I++ + A
Sbjct: 194 TVPE--ALELYRRFSLLEYVPSSPTLFNSGTRHEQLSSCFLLDSPEDELGSIYQRYTDVA 251
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + ++RS GS I TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 252 MLSKFSGGIGLAYHRIRSRGSLITSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGAACVY 311
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH D+EEF+ELR NTGD+ RRTH++N+A WVPDLFMKRV W+LF P VP L
Sbjct: 312 LETWHADLEEFLELRDNTGDEARRTHNLNLANWVPDLFMKRVEADGAWSLFDPKVVPHLT 371
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD----AC 352
+ +G++FE +Y+ E K K I A ++ +++ L +TG+ W+TFKD AC
Sbjct: 372 DLYGEDFERAYLEAE-----AKGLAAKSIKAREMYARMMRTLAQTGNGWMTFKDKSNRAC 426
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN---GKL--DPIKLK 407
N + V +H SNLCTEI TSK+E VCNLGSINL H GK+ D KL
Sbjct: 427 NQTARPGRV--VHLSNLCTEILEVTSKDETAVCNLGSINLARHTSTDAQGKVTFDWEKLA 484
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+T+R A+R LD VID+NYY + A+ SN R RPVGLGIMG QD M++P+ + EA
Sbjct: 485 QTVRTAVRQLDRVIDLNYYPIATAESSNQRWRPVGLGIMGLQDVFFQMRLPFDAPEARTL 544
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
+ + E I ++A AS ELA E G + ++ + QG L ++ V
Sbjct: 545 SRKVSEEIYFHALSASVELAAEHGAHPAFPETRAAQGELQFEA------------WGVTP 592
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
+S W+ LR R+K+ G+RNS +AIAPTATI++I G IEP NL + LSG+F
Sbjct: 593 EDSARWEALRTRVKQTGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFL 652
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
++NRYLV+ELK G W+E M +K +G++ IS IP ++R IY TA+E+ +I+
Sbjct: 653 QVNRYLVEELKALGKWNEEMRTRIKLAEGSIQGISEIPAEVRAIYRTAWELPMRSLIDMA 712
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI 707
+ R +IDQSQSLN+++ + + +L Y AW +GLKTTYYLRS A K+ E
Sbjct: 713 ADRGAFIDQSQSLNLFMESPNIGQLSSMYMYAWKKGLKTTYYLRSRPATRIAKATVEAP- 771
Query: 708 DSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+E K + I + + CE+CQ
Sbjct: 772 -----------------REEKPTEAQAIACSLENPEACEACQ 796
>gi|108757444|ref|YP_633212.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus
xanthus DK 1622]
gi|108461324|gb|ABF86509.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus
xanthus DK 1622]
Length = 785
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 304/712 (42%), Positives = 433/712 (60%), Gaps = 38/712 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y +++ARLL IQKEV ++I FS+ + G + L+ +L +F
Sbjct: 68 EEPEYGRLSARLLATFIQKEVSNQDIHS----------FSQSVAAGHKHGLIADRLLQFV 117
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L+ A+ P R+ F Y GL+ +YDRY L R +E PQ FF+R+A LS +
Sbjct: 118 QANARKLNAAIDPSRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQEFFLRVASALSGDN 177
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
N AI+ Y L SS ++ S+PTLFNSGT QLSSC+L P D+L I++ + A
Sbjct: 178 VNE---AIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPADELDAIYKKYSDIA 234
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + +VR+ GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 235 MLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGACCVY 294
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR+NTGDD RRTH++N+A WVPDLFMKRV W+LF P VP
Sbjct: 295 LETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFDPKSVPHFT 354
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G FE++Y E +K+ A L+ +++ L +TG+ W+TFKD N +S
Sbjct: 355 DLYGDAFEQAYAKAEADG-----LAMRKVKARDLYARMMKSLAQTGNGWMTFKDISNRKS 409
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI TS+ E VCNLGS+NL+ + +GK D +L+ ++AM
Sbjct: 410 NQTGKAGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRMLVDGKFDFERLRANAQLAM 469
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LD VID+NYY + A SN R RPVGLG+MG QD +K+ + S EA + + E
Sbjct: 470 RQLDRVIDLNYYPIPTAASSNKRWRPVGLGLMGLQDVFFQLKLAFDSAEARALSKKISEE 529
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S ELAE+ G + S+ + +G L D + V ++ W
Sbjct: 530 IYFAALTTSCELAEQYGAHESFAETRAAKGELQFD------------HWGVVPEDTARWD 577
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI K G+RNS +AIAPTATI++I+G IEP NL + LSG+F ++NRYLV
Sbjct: 578 ALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLSGDFLQVNRYLV 637
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L+ GLW+E++ +K +G++ I+ +P++LR +Y TA+E+ +++ G+ R +I
Sbjct: 638 RDLQALGLWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSLLDMGADRGAFI 697
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQSQSLN+++ + KL Y AW +GLKTTYYLRS A K+ G
Sbjct: 698 DQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATVGAG 749
>gi|357415821|ref|YP_004928841.1| ribonucleoside-diphosphate reductase subunit alpha
[Pseudoxanthomonas spadix BD-a59]
gi|355333399|gb|AER54800.1| ribonucleoside-diphosphate reductase, alpha subunit
[Pseudoxanthomonas spadix BD-a59]
Length = 807
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 306/710 (43%), Positives = 431/710 (60%), Gaps = 40/710 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y ++ ARLL CI KEV G++I FS+ I++G + L+N +L EF
Sbjct: 95 EEPEYGRLAARLLANCIAKEVAGQQI----------HAFSQSISRGHEVGLINARLLEFV 144
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ D +F Y GL+ LYDRY L R IE PQ FF+RIA LS E
Sbjct: 145 QANARKLNDAIDLNLDREFEYFGLRTLYDRYLLRHPHTRKVIETPQQFFLRIASALS--E 202
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
E A+ Y ++ +++ S+PTLFN+GT QLSSC+L P D L I+ + A
Sbjct: 203 EVPE--ALALYQRMARLDYLPSSPTLFNAGTTHEQLSSCFLLDSPQDSLESIYARYGDIA 260
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G +++VR+ GS I TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 261 QLSKFSGGIGVSYSRVRARGSLISSTNGHSNGIVPWLKTLDSSVAAVNQGGKRKGAACVY 320
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH D+E+F+ELR N GDD RRTH++N+A WVPDLFM+RV + W+LF P P+L
Sbjct: 321 LETWHADLEDFLELRDNAGDDARRTHNLNLANWVPDLFMQRVEADAPWSLFDPKTTPELP 380
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ FE +Y+ E Q K K I+A L+ +++ L ETG+ W+TFKD CN+ S
Sbjct: 381 DLYGEAFEHAYLQAEAQGKATKT-----IAARKLYARMMRTLAETGNGWMTFKDKCNLAS 435
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL-TLHMKNGKLDPIKLKKTIRIA 413
Q + +IH SNLCTEI TS +E VCNLGSINL +G D KL +T+R+A
Sbjct: 436 NQTLRAGNVIHLSNLCTEILEVTSSDETAVCNLGSINLGRHFDDHGDFDFDKLAQTVRLA 495
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+ LD VID+N+Y ++ A+ NLR RPVGLG MG QD ++ + S +A +++ E
Sbjct: 496 VHQLDRVIDLNFYPIQTARRGNLRWRPVGLGCMGLQDVFFKKRLAFDSAQARALSNKIAE 555
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I ++A S ELA+++GR+ S+ + G L D+ V ++ W
Sbjct: 556 TIYFHALETSCELAQQRGRHPSFADTRAASGALQFDA------------WNVTPEDTARW 603
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR RI++ G+RNS +AIAPTATI++I G +EP NL + LSG+F ++NRYL
Sbjct: 604 DALRARIRQHGLRNSLLIAIAPTATIASIAGCYECVEPQLSNLFKRETLSGDFLQVNRYL 663
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V ELKK GLW M +K +G++ I++IP LR+IY TA+EI +I+ + R +
Sbjct: 664 VDELKKLGLWTAQMRDAIKLAEGSIQGIAQIPQTLRQIYRTAWEIPMRSLIDMAAGRGAF 723
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
IDQS SLN+++ + + L Y AW +GLKTTYYLRS A K+
Sbjct: 724 IDQSASLNLFMESPNIGALSSMYMYAWKQGLKTTYYLRSRPATRIAKATL 773
>gi|338536258|ref|YP_004669592.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus
fulvus HW-1]
gi|337262354|gb|AEI68514.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus
fulvus HW-1]
Length = 838
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 303/712 (42%), Positives = 432/712 (60%), Gaps = 38/712 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y +++ARLL IQKEV ++I FS+ + G + L+ +L +F
Sbjct: 121 EEPEYGRLSARLLATFIQKEVSNQDIHS----------FSQSVAAGHKHGLIADRLLQFV 170
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L+ A+ P R+ F Y GL+ +YDRY L R +E PQ FF+R+A LS +
Sbjct: 171 QANARKLNAAIDPSRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQEFFLRVASALSGDN 230
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
N AI+ Y L SS ++ S+PTLFNSGT QLSSC+L P D+L I++ + A
Sbjct: 231 VNE---AIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPADELDAIYKKYSDIA 287
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + +VR+ GS IK TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 288 MLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGACCVY 347
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR+NTGDD RRTH++N+A WVPDLFMKRV W+LF P VP
Sbjct: 348 LETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFDPKAVPHFT 407
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G FE++Y E +K+ A L+ +++ L +TG+ W+TFKD N +S
Sbjct: 408 DLYGDAFEQAYAKAEADG-----LAMRKVKARDLYARMMKSLAQTGNGWMTFKDISNRKS 462
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI TS+ E VCNLGS+NL+ + +GK D +L+ ++AM
Sbjct: 463 NQTGKDGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRMLVDGKFDFERLRANAQLAM 522
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LD VID+NYY + A SN R RPVGLG+MG QD +K+ + S EA + + E
Sbjct: 523 RQLDRVIDLNYYPIPAAASSNKRWRPVGLGLMGLQDVFFQLKLAFDSAEARALSKKISEE 582
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S ELAE+ G ++S+ + +G L D + V ++ W
Sbjct: 583 IYFAALTTSCELAEQYGAHASFPETRAARGELQFD------------HWGVVPEDTARWD 630
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI K G+RNS +AIAPTATI++I+G IEP NL + LSG+F ++NRYLV
Sbjct: 631 ALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLSGDFLQVNRYLV 690
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L+ GLW+E+ +K +G++ ++ +P+ LR +Y TA+E+ +++ G+ R +I
Sbjct: 691 RDLQALGLWNENTRNRIKMAEGSVQDLTELPEHLRAVYRTAWELPMRSLLDMGADRGAFI 750
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQSQSLN+++ + KL Y AW +GLKTTYYLRS A K+ G
Sbjct: 751 DQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATVGAG 802
>gi|389799152|ref|ZP_10202155.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
sp. 116-2]
gi|388443611|gb|EIL99753.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
sp. 116-2]
Length = 806
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 302/708 (42%), Positives = 418/708 (59%), Gaps = 37/708 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y Q+ ARLL I KEV G+EI+ +S+ I +G + LLN +L +F
Sbjct: 100 EEPEYGQLAARLLGAYIDKEVSGQEIQS----------YSQSIARGTELGLLNERLRDFV 149
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ P F Y GL+ +YDRY L R IE PQ FFMRIA L NE
Sbjct: 150 AANTRKLNDAIDPLASRHFEYFGLRTVYDRYLLRHPQRRLVIETPQHFFMRIACALGGNE 209
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
++ Y LLSS ++ S+PTLFN+GT QLSSCYL P D L I++ + A
Sbjct: 210 IGE---TLELYRLLSSLEYLASSPTLFNAGTAHEQLSSCYLLDSPRDSLESIYDKYADVA 266
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK+AGG+G +++VRS GS I+GTNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 267 KLSKFAGGIGLAYSRVRSRGSLIRGTNGHSNGLVPWLKTLDASVAAVNQGGKRKGAACVY 326
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE+WH DI++F+ELR NTGDD RR H++NIA W+PD FM+RV W+LF P VP
Sbjct: 327 LESWHADIKDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGEWSLFDPKVVPHFV 386
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ F+ +Y E K + A L+ +++ L +TG+ W+TFKD CN S
Sbjct: 387 DSWGEAFDAAYRKAEADG-----LAVKTVKARELYARMMRTLAQTGNGWMTFKDRCNATS 441
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI +S E VCNLGS+NL H+ +G D +L T+RIA+
Sbjct: 442 NQTAKPGNVIHLSNLCTEILEVSSATETAVCNLGSVNLARHVVDGAFDFDQLAATVRIAV 501
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID+NYY + A+ +N++ RPVGLG+MG QD +++P+ S EA+ + + E
Sbjct: 502 RQLNRVIDLNYYPIDTARTANMKWRPVGLGVMGLQDVFFKLRLPFDSAEALALSTRIAEE 561
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A S ELAE G + + S G L D + + W
Sbjct: 562 IYFHALSQSCELAETDGAHPGFAESRAANGELQFD-----------HWPNATPHDIARWD 610
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RIK+ G+RNS +AIAPTATI++I G IEP NL + LSG+F ++NR+L
Sbjct: 611 ALRERIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRHLA 670
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK GLW + +K +G++ I+ IP LR IY T +E+ +I+ + R WI
Sbjct: 671 DELKTLGLWTPEIRDAIKLAEGSIQGIAAIPARLRAIYRTVWELPQKSLIDLAASRGAWI 730
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
DQSQSLN+++ N + +L Y AW G+KTTYYLRS A K+
Sbjct: 731 DQSQSLNLFMENPNIGQLSSMYMYAWKSGIKTTYYLRSRPATKIAKTT 778
>gi|379057285|ref|ZP_09847811.1| ribonucleotide-diphosphate reductase subunit alpha [Serinicoccus
profundi MCCC 1A05965]
Length = 854
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/721 (38%), Positives = 445/721 (61%), Gaps = 20/721 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG--KEIKQIDIP----IKYKEYFSKFINKGIDNKLL 54
++ DP Y + +RLL+ + K VFG +++ D P K+++YF + +G+ LL
Sbjct: 71 VKDDPAYDTIASRLLVKTMYKAVFGDTRDLLGEDDPDVIRAKHRQYFPGAVAQGVRRGLL 130
Query: 55 NPKLAE-FNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIR--IEMPQFFFMRIA 110
+P+L E F+L L+ AL P RD Y+G + L RY L + R +E PQFF+MR+A
Sbjct: 131 DPRLTELFDLERLAGALDPGRDDLLRYVGAQTLRTRYALTDADPARTVLETPQFFWMRVA 190
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
MGL+L E + A++FY+ +S ++ + TL N+GT SQLS+C++ + DD+ I +
Sbjct: 191 MGLALTEDDPTHAALEFYDAMSRLEYLAAGSTLVNAGTAYSQLSNCFVMQMEDDIEHIAK 250
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
S+++ L+K GG+G +++R GSPI+ N S G IPF+ ++ AV++GGK+
Sbjct: 251 SVRDVMWLTKGTGGIGMSVSKLRCEGSPIRSNNTSSTGPIPFMHTIDSTLRAVSRGGKKF 310
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA+C YLE WH+D F++LR+N+GD RRT N A+W+ D FMKRV W LF P
Sbjct: 311 GALCFYLENWHLDFPGFLDLRQNSGDPYRRTRTANTAVWLSDEFMKRVAADDEWFLFDPL 370
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
D PDL G +F Y + + + G ++ KK+ A W+ IL L T HPW+T+KD
Sbjct: 371 DTPDLVEATGADFSRRYAAHVARARAGGLR-HKKLRAREQWKAILVSLQTTSHPWLTWKD 429
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG------KLDPI 404
+ N R+ + G IHSSNLCTEITL ++ + VCNL S+NL+ H+ +D
Sbjct: 430 SINTRALNDNTGTIHSSNLCTEITLPQDRDNVSVCNLASVNLSRHVHGRHSQGEVSIDWD 489
Query: 405 KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEA 464
+L ++ R+A+R LDN+IDI +V ++++SN ++R +GLG+MGF D + M + Y S EA
Sbjct: 490 RLARSTRLAVRQLDNLIDITISSVPESEHSNEQNRALGLGVMGFTDVVERMGLSYESTEA 549
Query: 465 IKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLK 524
D+ +E + ++A AS +LA E+G Y +++GS W QG++P D++ LLE +RG ++
Sbjct: 550 CDLIDRLVEFVSWHAIDASADLARERGAYPTFEGSRWSQGLVPIDTIALLEADRGLT-VE 608
Query: 525 VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG 584
V+ ++W LR ++++ G+RNS +AIAPTA+I + G + ++P + + ++ +G
Sbjct: 609 VDRGSRMDWDALREKVRE-GLRNSTLMAIAPTASIGLVAGTTPGLDPQFSQIFSRATSAG 667
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
+F E+NR LV +L++ GLW E + +L G+LS++ +P L++IY T+F++SP +
Sbjct: 668 KFLEVNRNLVADLRELGLW-EQVREDLLRHQGDLSKVEGVPAALQEIYRTSFQLSPYAFL 726
Query: 645 EAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
+ QKWIDQ+ S NIY++++ + E Y AW G+KTTYYL + + A++S +
Sbjct: 727 HVAARAQKWIDQAISRNIYLASRDVGSMAELYSAAWRMGVKTTYYLHMMPRHTAEQSTVK 786
Query: 705 M 705
+
Sbjct: 787 V 787
>gi|389774174|ref|ZP_10192321.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
spathiphylli B39]
gi|388438589|gb|EIL95334.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
spathiphylli B39]
Length = 812
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/708 (42%), Positives = 420/708 (59%), Gaps = 37/708 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y Q+ ARLL I KEV G+EI+ FS+ I +G +LN +L +F
Sbjct: 106 EEPEYGQLAARLLGAYIDKEVSGQEIQS----------FSQSIARGASLSILNDRLRDFV 155
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ P +F Y GL+ +YDRY L R IE PQ FFMRIA L NE
Sbjct: 156 AANARKLNDAIDPLATRRFEYFGLRTVYDRYLLRHPQTRLVIETPQHFFMRIACALGGNE 215
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
++ Y LLSS ++ S+PTLFN+GT QLSSCYL P D L I++ + A
Sbjct: 216 IGE---TLELYRLLSSLEYIASSPTLFNAGTCHEQLSSCYLLDSPVDSLESIYDKYADVA 272
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK+AGG+G +++VRS GS I+GTNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 273 KLSKFAGGIGLAYSRVRSRGSLIRGTNGHSNGLLPWLKTLDASVAAVNQGGKRKGAACVY 332
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE+WH DIE+F+ELR NTGDD RR H++NIA W+PD FM+RV W+LF P VP
Sbjct: 333 LESWHADIEDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGDWSLFDPKVVPHFV 392
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ F+ +Y E K + A L+ +++ L +TG+ W+TFKD CN S
Sbjct: 393 DSWGEAFDAAYRKAEADG-----LAVKTVKARELYARMMRTLAQTGNGWMTFKDRCNATS 447
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI +S +E VCNLGS+NL H+ +G D +L T+R A+
Sbjct: 448 NQTAKTGNVIHLSNLCTEILEVSSVDETAVCNLGSVNLARHVTDGAFDYDQLAATVRTAV 507
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID+NYY + A+ +N++ RPVGLG+MG QD +++P+ S EA+ + + E
Sbjct: 508 RQLNRVIDLNYYPIATARTANMKWRPVGLGVMGLQDVFFKLRLPFDSAEALALSTRIAEE 567
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I ++A S ELA +G + + S G L D + + + W
Sbjct: 568 IYFHALSQSCELARVEGAHPGFAESRAASGELQFD-----------HWPQATPHDDTRWH 616
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +I++ G+RNS +AIAPTATI++I G IEP NL + LSG+F ++NR+L
Sbjct: 617 ALREQIRQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRHLA 676
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK GLW + +K +G++ I+ IP+ LR IY T +E+ +IE + R +I
Sbjct: 677 DELKALGLWTSDIRDAIKLAEGSIQGIAAIPERLRAIYRTVWELPQKALIELAAARGAYI 736
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
DQSQSLN+++ N + +L Y AW G+KTTYYLRS A K+
Sbjct: 737 DQSQSLNLFMENPNIGQLSSMYMYAWKAGIKTTYYLRSRPATKIAKTT 784
>gi|389794220|ref|ZP_10197378.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
fulvus Jip2]
gi|388432745|gb|EIL89734.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
fulvus Jip2]
Length = 816
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/714 (42%), Positives = 422/714 (59%), Gaps = 37/714 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y Q+ ARLL I KEV G+EI+ FS+ I +G + +LN +L +F
Sbjct: 110 EEPEYGQLAARLLGAYIDKEVSGQEIQS----------FSQSIARGAELGILNDRLRDFV 159
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L++A+ P +F Y GL+ +YDRY L R IE PQ FFMRIA L NE
Sbjct: 160 ATNARKLNDAIDPLATRRFEYFGLRTVYDRYLLRHPQRRLVIETPQHFFMRIACALGGNE 219
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
++ Y LLSS ++ S+PTLFN+GT QLSSCYL P D L I++ + A
Sbjct: 220 IGE---TLELYRLLSSLEYIASSPTLFNAGTCHEQLSSCYLLDSPVDSLESIYDKYADVA 276
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK+AGG+G +++VRS GS I+GTNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 277 KLSKFAGGIGLAYSRVRSRGSLIRGTNGHSNGLLPWLKTLDASVAAVNQGGKRKGAACVY 336
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGDD RR H++NIA W+PD FM+RV W+LF P VP
Sbjct: 337 LETWHADIEDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVESDGDWSLFDPKVVPHFV 396
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ F+ +Y E LG K + A L+ +++ L +TG+ W+TFKD CN S
Sbjct: 397 DSWGETFDAAYRKAEAD-GLG----VKTVKARELYARMMRTLAQTGNGWMTFKDRCNATS 451
Query: 357 PQQH--VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q +IH SNLCTEI +S NE VCNLGS+NL+ H+ +G + +L T+R A+
Sbjct: 452 NQTAKLENVIHLSNLCTEILEVSSVNETAVCNLGSVNLSRHVVDGVFNYDQLAATVRTAV 511
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID+NYY + A+ +N++ RPVGLG+MG QD +++P+ S EA+ + + E
Sbjct: 512 RQLNRVIDLNYYPIPTARTANMKWRPVGLGVMGLQDVFFKLRLPFDSTEALALSTRIAEE 571
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S ELAE +G + + S L D + + W
Sbjct: 572 IYFNALSQSCELAEGEGMHPGFAESRAANAELQFD-----------YWPNTTPHNTARWD 620
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +IK+ G+RNS +AIAPTATI++I G IEP NL + LSG+F ++NRYL
Sbjct: 621 ALREKIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLA 680
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK GLW + +K +G++ I+ IP+ LR IY T +E+ +IE + R +I
Sbjct: 681 DELKALGLWTSEIRDAIKLAEGSIQNINAIPERLRAIYRTVWELPQKALIELAAARGAYI 740
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
DQSQSLN+++ N + +L Y AW G+KTTYYLRS A K+ D
Sbjct: 741 DQSQSLNLFMENPNIGQLSSMYMYAWKAGIKTTYYLRSRPATKIAKTTVSAAPD 794
>gi|430741871|ref|YP_007201000.1| ribonucleoside-diphosphate reductase subunit alpha [Singulisphaera
acidiphila DSM 18658]
gi|430013591|gb|AGA25305.1| ribonucleoside-diphosphate reductase, alpha subunit [Singulisphaera
acidiphila DSM 18658]
Length = 801
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 306/714 (42%), Positives = 432/714 (60%), Gaps = 41/714 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YSQ+ ARLL I KEV ++I FS+ ++ G L+ + A+
Sbjct: 98 IAEEPEYSQLAARLLDCYIAKEVMNQDIHS----------FSQAVSTGHRLGLIATETAQ 147
Query: 61 FNLS----LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLS 114
+ L + A RD +F Y GL+ +YDRY L R IE P +FF+R+A GLS
Sbjct: 148 QVAADARKLNAAAAASPRD-KFEYFGLRTVYDRYLLRHPTTRDVIETPAYFFLRVACGLS 206
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
N + A+ + L++S +M S+PTLFNSGT R Q+SSCYL P D L I++
Sbjct: 207 RNVVD----ALDLFELMASHRYMPSSPTLFNSGTPRPQMSSCYLLDSPADSLESIYDRYA 262
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSKYAGG+G + ++RS GS I+GTNG GV+P+LK ++ AVNQGG+RKGA
Sbjct: 263 DIAKLSKYAGGIGLAYHRIRSRGSYIQGTNGHGNGVVPWLKTMDSSVAAVNQGGRRKGAC 322
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
C YLE+WH DIEEF+EL+ N GD+ RRT+++N+A WVPDLFM+RV + W+LF P VP
Sbjct: 323 CVYLESWHADIEEFLELKDNAGDEARRTYNLNLANWVPDLFMQRVEAGANWSLFDPKTVP 382
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
L + FG+ F+ +Y E K+++A L+ +++ L ETG+ W+ FKDACN
Sbjct: 383 HLTDLFGEAFDVAYAEAEENG-----LAVKQVAARDLYARMMKTLAETGNGWLNFKDACN 437
Query: 354 IRSPQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+S Q V ++HSSNLCTEI TS E VCNLGSINL H+ + D L +T+R
Sbjct: 438 RKSNQTRVPGNVVHSSNLCTEIVEVTSAGETAVCNLGSINLVQHVDDDGFDFEALAETVR 497
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++ SN R RPVG+G+MG QD L + +P+ + EA + + +
Sbjct: 498 TAVPFLDAVVDINFYPTPESATSNRRWRPVGIGLMGLQDVLFHLNLPFDAPEARRLSARI 557
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I ++A S +LAE+ G + S+ + +G+L D L E G
Sbjct: 558 QEEIYFHALSVSCDLAEKLGPHPSFAETRAAEGVLQID---LWGWEGG---------HDA 605
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR+RI++ G+RNS VAIAPTATI++I+G IEP NL + LSGEF ++NR
Sbjct: 606 RWSDLRDRIRRHGLRNSLLVAIAPTATIASIVGAYECIEPQISNLFKRETLSGEFLQVNR 665
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLVKELK +GLW E + +K +G++ I IP +LR++Y T +E+ +I+ + R
Sbjct: 666 YLVKELKARGLWTEEIRNRIKLAEGSIQGIEEIPAELRRVYRTVWEVPMRSLIDMAADRA 725
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
+IDQSQSLN++I + S KL Y AW RGLKT+YYLRS A K+ +
Sbjct: 726 PFIDQSQSLNLFIESPSIGKLSSMYMYAWKRGLKTSYYLRSRPATGIAKTTVSL 779
>gi|302542645|ref|ZP_07294987.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302460263|gb|EFL23356.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 804
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 299/761 (39%), Positives = 439/761 (57%), Gaps = 46/761 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
++P YS++ ARLL I E G+ + FS + G L+ AEF
Sbjct: 76 EEPEYSKLAARLLTRAIADEAAGQG----------ADSFSASVAVGHREGLIADSTAEFV 125
Query: 63 LS-------LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGL 113
+ L+ AL D +F Y GL+ L+ RY L R IE PQ F +R+A GL
Sbjct: 126 TAHTARLDALVDRALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGL 185
Query: 114 SLNESNRE-KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFES 171
+ + S R + Y + S+ +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 186 AEDLSERALDDVAELYRMTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNR 245
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKG 231
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFL+ ++ AVNQGG+RKG
Sbjct: 246 YHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKG 305
Query: 232 AICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291
A C YLETWH DIEEF+ELR NTG++ RRTH++N+A W+PD FM+RV W+LFSP D
Sbjct: 306 AACVYLETWHADIEEFLELRDNTGEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFSPVD 365
Query: 292 VPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
P+L + +G+EF+ +Y E + + K++ A L+ +++ L +TG+ W+TFKDA
Sbjct: 366 APELVDLWGEEFDAAYRKAEAEG-----RALKQVPARQLYSRMMRTLAQTGNGWMTFKDA 420
Query: 352 CNIRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKK 408
N + Q ++HSSNLCTEI T E VCNLGS+NL+ H+ ++G++D +L +
Sbjct: 421 ANRTANQTAEAGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLSAHLGEDGEMDWERLDR 480
Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
T+R A+ LD V+DIN+Y ++A SN R RPVGLG+MG QD +++P+ S EA +
Sbjct: 481 TVRTAVTFLDRVVDINFYPTEEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQALS 540
Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528
+ E I AY AS +LAE G + ++ + +G+L D Y +
Sbjct: 541 TRISERIMLAAYEASCDLAERHGPHPAWAETRTARGVLHPD-----------HYTGAQAA 589
Query: 529 ESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTE 588
W+ LR R+ GMRNS +AIAPTATI++I GV IEP NL + LSGEF +
Sbjct: 590 WPERWEALRTRMATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQ 649
Query: 589 INRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648
+N YLV +LKK G+WD L+ +G++ +S +P D+R +Y TA+EI +I+ +
Sbjct: 650 VNNYLVNDLKKLGVWDTQTRDALREANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAA 709
Query: 649 VRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
R ++DQSQSLN++++ + KL Y AW RG+KTTYYLRS A +S
Sbjct: 710 ARTPYLDQSQSLNLFMAAPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGAAT 769
Query: 709 SVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + Q+ + + S + + CE+CQ
Sbjct: 770 ATTPVPAPVPA-----QQTPDEADAVACS-LENPESCEACQ 804
>gi|336119010|ref|YP_004573782.1| ribonucleoside-diphosphate reductase subunit alpha [Microlunatus
phosphovorus NM-1]
gi|334686794|dbj|BAK36379.1| ribonucleoside-diphosphate reductase alpha subunit [Microlunatus
phosphovorus NM-1]
Length = 876
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/722 (38%), Positives = 448/722 (62%), Gaps = 20/722 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGK------EIKQIDIPIKYKEYFSKFINKGIDNKLL 54
++ DP Y + ARLL+ + K+VFG+ E + I + +++YF +I + ++ +L
Sbjct: 76 VKDDPAYDTIAARLLVKTLYKQVFGQTHDLFGEAVEETIALLHRDYFGGYIEQAVNRGML 135
Query: 55 NPKLAE-FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR------IEMPQFFFM 107
+ +LAE F+L L+ AL P RD Y+G++ + RY L + +E+PQFF+M
Sbjct: 136 DSRLAELFDLDRLAAALDPTRDDLLRYIGVQTMRTRYMLTDQATSTGKKRSLEVPQFFWM 195
Query: 108 RIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYG 167
R++MGL+LNE + + A+ FY+ +S +++ + TL N+GT +QLS+C++ + D++
Sbjct: 196 RVSMGLALNEDDPTEAALGFYDKMSRLDYLAAGSTLVNAGTSYAQLSNCFVMQMEDEIEH 255
Query: 168 IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG 227
I +S+++ L+K GG+G T++RS GSPI+ N S G IPF+ ++ AV++GG
Sbjct: 256 IAKSVRDVMWLTKGTGGIGLSVTKLRSEGSPIRSNNTTSTGPIPFMHTIDSTLRAVSRGG 315
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLF 287
K+ GA+C YLE WH+D +F++LR+N+GD RRT N A+W+ D FMKRV + W LF
Sbjct: 316 KKFGALCFYLENWHLDFAQFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVRDDADWYLF 375
Query: 288 SPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWIT 347
P + PDL +G F Y Y + G I FKK+ A ++ IL L T HPW+
Sbjct: 376 DPLETPDLVELYGSAFSTRYAEYVAMAEAGTIHRFKKMRAREQFQSILISLQTTSHPWLI 435
Query: 348 FKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNG--KLDP 403
+KD N R+ + G IH SNLCTE+ L + + VCNL SINL+ H+ +G +LD
Sbjct: 436 WKDTINTRALNNNTGTIHLSNLCTEVCLPQDRENVAVCNLASINLSRHLVEVDGLLQLDW 495
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L+ + R A+R LDN+IDI +V ++++SN ++R VGLG+MGF D + + + Y S+
Sbjct: 496 DRLRASARSAVRQLDNLIDITISSVPESEHSNDQNRAVGLGVMGFTDIVERLGLSYESEA 555
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A D+ ME + ++A AS +LA E+G Y ++ GS W +G++P D+L++L +RG+ L
Sbjct: 556 AYDLIDELMEFVSFHAIDASADLARERGSYPNFAGSRWSKGMVPIDTLEVLAADRGTP-L 614
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
V+ + +NW+ LR+++ GMRN+ +AIAPTA+I + G + I+P + + +S +
Sbjct: 615 TVDKTARMNWEALRSKVAG-GMRNATLLAIAPTASIGLVAGTTPGIDPQFSQIFSRSTSA 673
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
G+F E+NR LV +LK +GLW E + +L G+LS+I IP++L IY T+F++SP
Sbjct: 674 GKFLEVNRNLVADLKARGLW-EQVREDLLRHQGDLSEIDGIPEELAAIYRTSFQLSPYAF 732
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
+ + QKWIDQ+ S NIY++++ + + Y+ AW G+KTTYYL + A+++
Sbjct: 733 LHVAARAQKWIDQAISRNIYLADRDISTMVDLYQAAWDLGVKTTYYLHMKPRHQAEQATV 792
Query: 704 EM 705
++
Sbjct: 793 KV 794
>gi|311743884|ref|ZP_07717690.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
marinum DSM 15272]
gi|311313014|gb|EFQ82925.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
marinum DSM 15272]
Length = 828
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 278/765 (36%), Positives = 465/765 (60%), Gaps = 22/765 (2%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
++ DP + + +RLL+ + K+VFG+ + + ++ + F + +G++ LL+ +LAE
Sbjct: 70 VKDDPAFDTIASRLLVKTLYKKVFGEGVTRDEVDAFHGPAFVASVVRGVELGLLDHRLAE 129
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNES 118
++L +L AL P RD Y+G++ + RY L +G +E+PQFF+MR++MGL+L+E+
Sbjct: 130 RYDLEVLGAALDPARDDLLRYIGVQTMRTRYMLVEPDGTPLEVPQFFWMRVSMGLALDEA 189
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+ A+ FY+ +S ++ + TL N+GT +QLS+C++ + DD+ I +S+++ L
Sbjct: 190 DPTAAALAFYDKMSRLEYLAAGSTLVNAGTGYAQLSNCFVMQMEDDIEHIAKSVRDVMWL 249
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
+K GG+G +++RS GSPI+ + S G IPF+ ++ A+++GGK+ GA+C Y+E
Sbjct: 250 TKGTGGIGLSVSKLRSEGSPIRSNHTTSTGPIPFMHTIDSTLRAISRGGKKFGALCFYME 309
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WH+D +F++LR N+GD RRT N A+W+ D FMKRV W LF P DVPDL
Sbjct: 310 NWHLDFAQFLDLRANSGDPYRRTRTANTAVWISDEFMKRVADDLDWYLFDPLDVPDLTEL 369
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
FG F Y Y + G+++ KK+ A +R IL L + HPW+T+KD N R+
Sbjct: 370 FGAAFSARYAEYVAEADAGRLR-HKKLRAREQFRAILVSLQASSHPWLTWKDTINTRALN 428
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM----KNGKLDPIKLKKTIRIAM 414
+ G IH SNLCTEITL ++ + VCNL SINL+ H+ + +D +L + R+A+
Sbjct: 429 HNTGTIHLSNLCTEITLPQDRDNVAVCNLASINLSRHLVGRRSDAHIDWDRLAGSTRLAV 488
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LDN+IDI +V +++ SN ++R +GLG+MGF D + Y S++A D+ ME
Sbjct: 489 RQLDNLIDITISSVPESERSNEQNRALGLGVMGFTDVVERFGWSYESEQAYDLIDEVMEF 548
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ ++A AS +LA E+G Y +++GS W QG++P DSL LL +RG ++V+ + L+W
Sbjct: 549 VSWHAIDASADLARERGAYPNFEGSRWSQGLVPIDSLDLLAADRGVP-VEVDRTTRLDWD 607
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ G+RNS +A+APTA+I + G + ++P + + ++ SG+F E+NR LV
Sbjct: 608 ALRAKVAG-GVRNSTLMAVAPTASIGLVAGTTPGLDPQFSQIFSRATSSGKFLEVNRNLV 666
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L+ GLW E++ +L G+LS++ +P +L++IY T+F++SP + + QKWI
Sbjct: 667 EDLQALGLW-ETVREDLLRHQGDLSKVDGVPAELQEIYRTSFQLSPYAFLHVAARAQKWI 725
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM--GIDSVNL 712
DQ+ S NIY+ ++ ++ E Y AW G+KTTYYL + + A++S ++ S
Sbjct: 726 DQAISRNIYLQSRDVGEMAELYAAAWRMGVKTTYYLHMMPRHTAEQSTVKVNKAASSTPA 785
Query: 713 DEISIKGYNK------NLQEIK--NNKKCLINSEINDVNECESCQ 749
+ +G+ +QE++ + C ++ + +C+SCQ
Sbjct: 786 GGAARRGFGAVATAPVEVQELEVVDGAACPVDPA--ERLQCDSCQ 828
>gi|374986758|ref|YP_004962253.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
bingchenggensis BCW-1]
gi|297157410|gb|ADI07122.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
bingchenggensis BCW-1]
Length = 799
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/711 (41%), Positives = 422/711 (59%), Gaps = 42/711 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL I +E G+ FS + G L+ AE
Sbjct: 74 IAEEPEYSKLAARLLTLAIAEEAAGQGAVS----------FSSSVAVGHREGLIADGTAE 123
Query: 61 FNLS-------LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F S L+ AL D +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 124 FVTSHAARLDALVDKALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVAC 183
Query: 112 GLSLNESNRE-KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIF 169
GL+ + S R + Y L S+ +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 184 GLAEDHSQRALDDVAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIY 243
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFL+ ++ AVNQGG+R
Sbjct: 244 NRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRR 303
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA C YLETWH DIEEF+ELR NTG++ RRTH++NIA W+PD FM+RV + W+LFSP
Sbjct: 304 KGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSP 363
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
D P L + +G+EF+ +Y E + K + A L+ +++ L +TG+ W+TFK
Sbjct: 364 VDAPALVDLWGEEFDAAYTKAEAEG-----LAVKTVPARQLYARMMRTLAQTGNGWMTFK 418
Query: 350 DACNIRSPQQHVG---IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIK 405
DA N R+ Q ++HSSNLCTEI T E VCNLGS+NL H+ ++G++D +
Sbjct: 419 DAAN-RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLGEDGQMDWAR 477
Query: 406 LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAI 465
L T+R A+ LD V+DIN+Y ++A SN R RPVGLG+MG QD +++P+ S EA
Sbjct: 478 LDATVRTAVTFLDRVVDINFYPTQEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQ 537
Query: 466 KFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKV 525
+ + Q E I AY AS LAE G + ++ + +G+L D Y
Sbjct: 538 QLSTQISERIMLAAYEASCALAERHGPHPAWSATRTARGVLHPD-----------HYTDA 586
Query: 526 NMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE 585
+ W LR R+ K GMRNS +AIAPTATI++I GV IEP NL + LSGE
Sbjct: 587 VATWPERWAALRERMAKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGE 646
Query: 586 FTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIE 645
F ++N YLV +LKK G+WD L+ +G++ S +P ++R++Y TA+E+ +I+
Sbjct: 647 FLQVNSYLVNDLKKLGVWDAQSREALRESNGSVQDFSWVPKEVRELYRTAWEVPQRALID 706
Query: 646 AGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++++ + KL Y AW RG+KTTYYLRS A
Sbjct: 707 MAAARTPYLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPAT 757
>gi|295836583|ref|ZP_06823516.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SPB74]
gi|197697283|gb|EDY44216.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SPB74]
Length = 790
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 298/705 (42%), Positives = 421/705 (59%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ F+ + G L+ + AE
Sbjct: 71 ISEDPAYSRLAARLLAIGIVAEAAGQGASG----------FAASVAVGHREGLIGDRTAE 120
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + PE D +F Y GL+ LY RY L R IE PQ F +R+A GL+
Sbjct: 121 FVATHAARLDALIDPEGDDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVAAGLAA 180
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+E
Sbjct: 181 DDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYL 240
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 241 QVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAA 300
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D+RRTH +N+A W+PD FM+RV W+LFSP DVP
Sbjct: 301 AVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFSPADVP 360
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EFE +Y E K K + A L+ +++ L +TG W+TFKD N
Sbjct: 361 ELTDLWGEEFEAAYRAAE-----AKGLARKTMPARELYGRMMRTLAQTGQGWMTFKDHSN 415
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + ++HSSNLCTEI T E VCNLGSINL ++NG++D +L +T+R
Sbjct: 416 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVENGEIDWERLDETVR 475
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y +A SN R RPVGLG MG QD +++P+ S A + +
Sbjct: 476 TAVTFLDRVVDINFYPTGQAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAAAKAVSTRI 535
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE+ G +++ + +G+L D + V +
Sbjct: 536 AERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPD------------HFDVERTWPE 583
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR RI K GMRNS +AIAPTATI++I GV +EP NL + LSGEF ++N
Sbjct: 584 RWEALRARIAKTGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LKK G+WD L+ +G++ + IP+D+R +Y TA+E+ +I+ + R
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERT 703
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPAT 748
>gi|442322489|ref|YP_007362510.1| ribonucleoside-diphosphate reductase [Myxococcus stipitatus DSM
14675]
gi|441490131|gb|AGC46826.1| ribonucleoside-diphosphate reductase [Myxococcus stipitatus DSM
14675]
Length = 833
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 302/708 (42%), Positives = 432/708 (61%), Gaps = 38/708 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y++++ARLL IQKEV ++I FS+ + G + L+ +L +F
Sbjct: 113 EEPEYARLSARLLATFIQKEVSNQDIHS----------FSQSVAAGHKHGLIADRLLQFV 162
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L+ A+ P R+ F Y GL+ +YDRY L R +E PQ FF+R+A LS +
Sbjct: 163 QANARKLNAAIDPTRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQEFFLRVACALS-GD 221
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ RE AI+ Y L SS ++ S+PTLFNSGT QLSSC+L P DDL I+ + A
Sbjct: 222 NARE--AIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPADDLDAIYRKYSDIA 279
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + +VR+ GS I+ TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 280 MLSKFSGGIGVGYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGACCVY 339
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE+WH DIE+F+ELR+NTGD+ RRTH++N+A WVPDLFMKRV + W+LF P VP L
Sbjct: 340 LESWHADIEDFLELRENTGDEARRTHNLNLANWVPDLFMKRVESEGDWSLFDPKVVPHLT 399
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG EFE++Y+ E +K+ A L+ +++ L +TG+ W+TFKD N +S
Sbjct: 400 DLFGAEFEKAYVEAE-----ASGLAMRKVKARDLYARMMKTLAQTGNGWMTFKDISNRKS 454
Query: 357 PQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI TS+ E VCNLGS+NL + +GK D +L+ ++A+
Sbjct: 455 NQTGLPQNVIHLSNLCTEILEVTSQGETAVCNLGSLNLGRMVVDGKFDFERLRANAQLAL 514
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ LD VID+NYY + A SN R RPVGLG+MG QD +K+ + + EA + + E
Sbjct: 515 KQLDRVIDLNYYPIPTAADSNRRWRPVGLGLMGLQDVFFQLKLAFDAPEARALSKKISEE 574
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S ELAE+ G + S+ + QG E V + W
Sbjct: 575 IYFAALTTSCELAEQFGAHPSFPETRAAQG------------EFQFASWGVTPEDPARWD 622
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI K G+RNS +AIAPTATI++I G IEP NL + LSG+F ++NRYLV
Sbjct: 623 ALRARIMKHGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLV 682
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L+ G+W+ES+ +K +G++ +++ +P+ LR IY TA+E+ +I+ + R +I
Sbjct: 683 RDLQALGMWNESVRNRIKLAEGSIQELTELPETLRAIYRTAWELPMRSLIDMAADRGAFI 742
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
DQSQSLN+++ + KL Y AW +GLKTTYYLRS A K+
Sbjct: 743 DQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKAT 790
>gi|453055153|gb|EMF02600.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 805
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 297/710 (41%), Positives = 427/710 (60%), Gaps = 40/710 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL I +E G+ FS + G L+ A
Sbjct: 76 ISEEPEYSRLAARLLTLAIAEEAAGQGAVS----------FSASVATGHREGLIADDTAA 125
Query: 61 FNL-------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F +L+ AL D +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 126 FVREHAERLDALVDAALADGADDRFGYFGLRTLHSRYLLRHPITRNVIETPQHFLLRVAC 185
Query: 112 GLSLNESNRE-KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIF 169
GL+ + S R + + Y L S+ +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 186 GLAEDHSVRALEDVAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIY 245
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+ + A LSK+AGG+G ++++RS GS I+GTNG S G++PFL+ ++ AVNQGG+R
Sbjct: 246 DRYHQVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRR 305
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA C YLETWH DIEEF+ELR NTG++ RRTH++NIA W+PD FM+RV + W+LFSP
Sbjct: 306 KGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSP 365
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
D PDL + +G EF+ +Y YE + K K I A L+ +++ L +TG+ W+TFK
Sbjct: 366 ADTPDLVDLYGDEFDAAYRRYEAEG-----KAVKTIPARVLYARMMRTLAQTGNGWMTFK 420
Query: 350 DACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKL 406
DA N + Q + ++HSSNLCTEI T+ E VCNLGS+NL H+ +G++D KL
Sbjct: 421 DAANRTANQTAEPGQVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLGADGEMDWEKL 480
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
+T+R A+ LD V+DIN+Y ++A SN R RPVGLG+MG QD +++P+ S EA
Sbjct: 481 DRTVRTAVTFLDRVVDINFYPTEQAGSSNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKA 540
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
+ + E I AY AS +LAE G + ++ + +G+L D Y
Sbjct: 541 LSTRISERIMLAAYEASADLAERHGPHPAWSATRTARGVLHPD-----------HYPNTE 589
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
+ + W LR RI GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 590 PTWAERWDALRARIASVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEF 649
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
++N YLV++LKK G+WD + + +G++ ++ IP ++R +Y TA+EI +I+
Sbjct: 650 LQVNTYLVEDLKKLGVWDRATRDAMTDANGSIQDMAWIPQEVRDLYRTAWEIPQRALIDM 709
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++++ + KL Y AW +G+KTTYYLRS A
Sbjct: 710 AAARTPYLDQSQSLNLFMASPTIGKLSSMYAYAWKQGIKTTYYLRSRPAT 759
>gi|386383362|ref|ZP_10068864.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
tsukubaensis NRRL18488]
gi|385669177|gb|EIF92418.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
tsukubaensis NRRL18488]
Length = 801
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 300/758 (39%), Positives = 428/758 (56%), Gaps = 49/758 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ DP YS++ ARLL I E G+ F+ + G D L+ + A
Sbjct: 84 ISDDPAYSRLAARLLTRTIAAEAAGQG----------SVSFTASVRVGHDEGLIADRTAA 133
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F L + P D +F Y GL+ LY RY L R IE PQ F +R+A GL+
Sbjct: 134 FVERYAERLDATIDPAADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAE 193
Query: 116 NESNRE-KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 194 DDGVRALDEVVALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYH 253
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 254 QVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 313
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV + W+LFSP D P
Sbjct: 314 AVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVADDAEWSLFSPADTP 373
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G EF+ +Y E K K + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 374 ELVDLWGDEFDAAYRAAE-----AKGLARKTMPARELYGRMMRTLAQTGNGWMTFKDAAN 428
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +HSSNLCTEI T E VCNLGS+NL + G++D +L T+R
Sbjct: 429 RTANQTAEKGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGGEIDWERLDATVR 488
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA + +
Sbjct: 489 TAVTFLDRVVDINFYPTEQAGRSNTRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTRI 548
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE G + +++ + +G+L D + +
Sbjct: 549 AERIMLAAYEASADLAERHGTFPAWEKTRAARGVLHPD------------HYGTEPAWPE 596
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR RI + GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 597 RWEALRARIARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 656
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV ELKK G+WD L+ +G++ S +P D+R++Y TA+EI +I+ + R
Sbjct: 657 YLVAELKKLGVWDAQTREALRDANGSVQGFSWVPADVRELYRTAWEIPQRGLIDMAAART 716
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A ++ V
Sbjct: 717 PYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGSAATPVP 776
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + + + + CE+CQ
Sbjct: 777 V-------------PAQATPEEAVACSLENPESCEACQ 801
>gi|38344004|emb|CAC17631.2| class I ribonucleotide-diphosphate reductase large chain
[Streptomyces microflavus]
Length = 793
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/703 (41%), Positives = 419/703 (59%), Gaps = 38/703 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ FS+ + G L+ + AE
Sbjct: 76 IAEDPAYSRLAARLLTLTIAEEAAGQGAVS----------FSESVATGHREGLIAERTAE 125
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L +A+ P D +F Y GL+ LY RY L R IE PQ F + +A GL+
Sbjct: 126 FAALHADRLDSAIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLGVAAGLAE 185
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 186 DDSVRALDEVTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYH 245
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 246 QVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 305
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 306 AVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVP 365
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G EF+ +Y+ E K K + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 366 ELVDLYGAEFDAAYVAAE-----AKGLARKTMPARELYGRMMRTLAQTGNGWMTFKDASN 420
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKT 409
+ Q + ++HSSNLCTEI T E VCNLGS+ L + +G+LD +L T
Sbjct: 421 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSVKLGAFVDTASGELDWERLDAT 480
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +K+P+ S EA +
Sbjct: 481 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLKLPFDSAEARALST 540
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS +LAE G ++D + +G+L D + V ++
Sbjct: 541 RISERIMLAAYEASADLAERNGPLPAWDKTRTARGVLHHD------------HYDVELTW 588
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR RI + GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 589 PERWAALRARIAEVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 648
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV ELK+ G+WD L+ G++ + +P + R +Y TA+EI +I+ +
Sbjct: 649 NAYLVDELKRLGVWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAA 708
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
R ++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS
Sbjct: 709 RTPFLDQAQSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRS 751
>gi|411004497|ref|ZP_11380826.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
globisporus C-1027]
Length = 807
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/710 (42%), Positives = 421/710 (59%), Gaps = 42/710 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + A
Sbjct: 83 ISEDPAYSRLAARLLTLSIADEAAGQGATS----------FSASVTVGHREGLIADRTAA 132
Query: 61 FNLSLLSNAL--LPERDL------QFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIA 110
F + L + AL L ER L +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 133 F-VELHAKALDELVERTLAEGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVA 191
Query: 111 MGLSLNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGI 168
GL+ +ES R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I
Sbjct: 192 AGLAEDESARALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSI 251
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+
Sbjct: 252 YDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGR 311
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
RKGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFS
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 371
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P DVP+L + +G EF+ +Y E K K + A L+ +++ L +TG W+TF
Sbjct: 372 PADVPELVDLWGDEFDAAYRAAE-----AKGLARKTMPARELYGRMMRTLAQTGQGWMTF 426
Query: 349 KDACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKL 406
KDA N + Q + ++HSSNLCTEI T+ E VCNLGS+NL + NG +D +L
Sbjct: 427 KDASNRTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVANGSIDWDRL 486
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA
Sbjct: 487 DSTVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARA 546
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
+ + E I AY AS +LAE G ++ + +G+L D ++N
Sbjct: 547 LSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYA----------TELN 596
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
E W LR R+ K GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 597 WPE--RWDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEF 654
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
++N YLV ELKK G+WD L+ G++ + IP+D+R +Y TA+EI +I+
Sbjct: 655 LQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDM 714
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 715 AAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 764
>gi|398782656|ref|ZP_10546370.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
auratus AGR0001]
gi|396996720|gb|EJJ07706.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
auratus AGR0001]
Length = 800
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/765 (39%), Positives = 438/765 (57%), Gaps = 58/765 (7%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNL 63
+P YS++ ARLL I +E G+ FS + G L+ + AEF
Sbjct: 75 EPQYSKLAARLLTLAIAEEAAGQGAVS----------FSASVATGHREGLIADETAEFVR 124
Query: 64 -------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLS 114
+L+ AL D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 125 THEARLDALVERALADGADDRFGYFGLRTLHSRYLLRHPTTRQVIETPQHFLLRVACGLA 184
Query: 115 LNESNRE-KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESI 172
+ R + Y L SS ++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 185 EDHGERALDDVAELYRLTSSLAYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRY 244
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFL+ ++ AVNQGG+RKGA
Sbjct: 245 HQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGA 304
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
C YLETWH D+EEF+ELR NTG++ RRTH++NIA W+PD FM+RV + W+LFSP D
Sbjct: 305 ACVYLETWHADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPSDA 364
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P+L + +G++F+ +Y E + + K+I A L+ +++ L +TG+ W+TFKD
Sbjct: 365 PELVDLWGEQFDAAYRRAEAEG-----RAVKQIPARVLYSRMMRTLAQTGNGWMTFKDTA 419
Query: 353 NIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG------KLDPI 404
N + Q + ++HSSNLCTEI T+ E VCNLGS+NL H+ N +D
Sbjct: 420 NRTANQTAEPGQVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLGNDAGGWEEAMDWE 479
Query: 405 KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEA 464
+L T+R A+ LD V+DIN+Y ++A SN R RPVGLG+MG QD +++P+ S EA
Sbjct: 480 RLDATVRTAVTFLDRVVDINFYPTEQAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEA 539
Query: 465 IKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLK 524
+ + + E I AY AS +LAE G + ++ + +G+L D Y
Sbjct: 540 QELSTRISERIMLAAYEASADLAERHGPHPAWSATRTARGVLHPD-----------HYPN 588
Query: 525 VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG 584
+ W LR+RI GMRNS +AIAPTATI++I GV IEP NL + LSG
Sbjct: 589 AEPRWADRWAALRSRIALTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSG 648
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EF ++N YL++ELK GLWD L+ +G++ ++ IP+++R +Y TA+EI +I
Sbjct: 649 EFLQVNAYLIEELKALGLWDARTRDALREANGSVQDVAWIPEEIRALYRTAWEIPQRALI 708
Query: 645 EAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
+ + R ++DQSQSLN+++++ + KL Y AW RG+KTTYYLRS A +S
Sbjct: 709 DMAAARTPYLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARG 768
Query: 705 MGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
S + Q+ + + + + + CE+CQ
Sbjct: 769 TAAASAPVP-----------QQAADPEA--VACSLENPESCEACQ 800
>gi|417933292|ref|ZP_12576618.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK182B-JCVI]
gi|340772196|gb|EGR94706.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK182B-JCVI]
Length = 859
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/786 (36%), Positives = 456/786 (58%), Gaps = 45/786 (5%)
Query: 4 DPVYSQVTARLLMYCIQKEVFG---KEIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGNTHDDLGDVDPERVQDLHRSYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLEALAAALDPTRDDLIGFMGVRTMVNRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ DDL I +I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDDLEHIARTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G +Q+R GSPI+ N S G IPF+ ++ AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSQLRCEGSPIRSDNTASTGPIPFIHTIDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAYYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSVNTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGK--LDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ GK LD +L T R
Sbjct: 439 ALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S + + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNDENRAIGLGVMGLTDMLEQIRVPYDSPDTCEIVDRI 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W G++P D+L +LE +RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLATERGTYPMFEGSGWSHGMVPMDTLAVLEHDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRTKVRA-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRATSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW ES+ L G+ S+I IP LR++Y T+F ++P + + Q
Sbjct: 677 NLVADLKDLGLW-ESVREELLRRQGDPSEIEAIPAPLRRLYRTSFTLNPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG----- 706
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAVNKAAGR 795
Query: 707 --------IDSVNLDEISIKGYNKNLQ---------------EIKNNKKCLINSEINDVN 743
SV + +S K++ +I + C ++ + +
Sbjct: 796 RNGPRRGFATSVRREGVSTATIEKSVNATLNASVDVEPVVSLDIIDGTSCPVDPQ--ERQ 853
Query: 744 ECESCQ 749
+CESCQ
Sbjct: 854 QCESCQ 859
>gi|302536806|ref|ZP_07289148.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. C]
gi|302445701|gb|EFL17517.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. C]
Length = 798
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/710 (41%), Positives = 429/710 (60%), Gaps = 42/710 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL + E G+ F++ + G L+ + AE
Sbjct: 73 ISEDPAYSRLAARLLTLAVADEAAGQGATS----------FAESVAVGHREGLIADRTAE 122
Query: 61 FNLS-------LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F + L+ +AL D +F + GL+ L+ RY L R IE PQ+F +R+A
Sbjct: 123 FVAAHAARLDALVEHALAEGADDRFGFFGLRTLHSRYLLRHPITRQVIETPQYFMLRVAC 182
Query: 112 GLSLNESNR--EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGI 168
GL+ ++S + E+ A Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I
Sbjct: 183 GLAEDDSVQAVEEVA-SLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSI 241
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+
Sbjct: 242 YDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGR 301
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
RKGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFS
Sbjct: 302 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVNADADWSLFS 361
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P DVP+L + +G EF+ +Y+ E L K K + A L+ +++ L +TG W+TF
Sbjct: 362 PADVPELVDLYGDEFDAAYVKAE-AAGLAK----KTMPARDLYGRMMRTLAQTGQGWMTF 416
Query: 349 KDACNIRSPQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKL 406
KDA N + Q + ++HSSNLCTEI T+ E VCNLGS+NL + +G++D +L
Sbjct: 417 KDASNRTANQTALPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVADGEMDWARL 476
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
+T+R A+ LD V+DIN+Y ++A SN + RPVGLG MG QD +++P+ S EA
Sbjct: 477 DETVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKA 536
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
+ + E I AY AS +LAE G ++ + QG+L D E ER +
Sbjct: 537 LSTKISERIMLAAYEASCDLAERSGPLPAWAETRTAQGVLHPDH---YETER-------H 586
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
E W LR RI K GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 587 WPE--RWDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEF 644
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
++N YLV++LK+ G+WD L+ G++ IP ++R++Y TA+EI +I+
Sbjct: 645 LQVNGYLVEDLKQLGVWDAQTREALRESSGSVQGFGWIPAEIRELYRTAWEIPQRGLIDM 704
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 705 AAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 754
>gi|345001979|ref|YP_004804833.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
sp. SirexAA-E]
gi|344317605|gb|AEN12293.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SirexAA-E]
Length = 803
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/710 (42%), Positives = 417/710 (58%), Gaps = 42/710 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + A
Sbjct: 80 ISEDPAYSRLAARLLTLTIADEAAGQGATS----------FSASVAVGHREGLIADRTAA 129
Query: 61 FNL-------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F +L+ L D +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 130 FVEQHAQVLDALVERTLADGADDRFGYFGLRTLHSRYLLRHPHTRQVIETPQHFMLRVAA 189
Query: 112 GLSLNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIF 169
GL+ +ES R + + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 190 GLAEDESVRARDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIY 249
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+R
Sbjct: 250 DRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRR 309
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFSP
Sbjct: 310 KGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSP 369
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
DVP+L + +G F+ +Y E + L + K + A L+ +++ L +TG W+TFK
Sbjct: 370 ADVPELTDLWGDAFDAAYRAAEAR-GLAR----KTMPARELYGRMMRTLAQTGQGWMTFK 424
Query: 350 DACNIRSPQQHVG---IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKL 406
DA N R+ Q ++HSSNLCTEI T E VCNLGS+NL + G +D +L
Sbjct: 425 DASN-RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGSIDWERL 483
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA
Sbjct: 484 DATVRTAVTFLDRVVDINFYPTEQAGTSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARA 543
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
+ + E I AY AS +LAE G ++ + +G+L D ++N
Sbjct: 544 LSTRISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYA----------TELN 593
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
E W LR RI K GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 594 WPE--RWDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEF 651
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
++N YLV+ELKK G+WD L+ G++ IP+D+R +Y TA+EI +I+
Sbjct: 652 LQVNGYLVEELKKLGVWDARTREALREASGSVQGFGWIPEDVRALYRTAWEIPQRGLIDM 711
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 712 AAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 761
>gi|182436092|ref|YP_001823811.1| ribonucleoside-diphosphate reductase large subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178464608|dbj|BAG19128.1| putative ribonucleoside-diphosphate reductase large subunit
[Streptomyces griseus subsp. griseus NBRC 13350]
Length = 804
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/762 (39%), Positives = 429/762 (56%), Gaps = 50/762 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + A
Sbjct: 80 ISEDPAYSRLAARLLTRTIADEAAGQGATS----------FSASVAVGHREGLIADRTAA 129
Query: 61 FNL-------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F L+ AL D +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 130 FVALHATALDQLVGQALTDGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAA 189
Query: 112 GLSLNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIF 169
GL+ +ES R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 190 GLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIY 249
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+R
Sbjct: 250 DRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRR 309
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFSP
Sbjct: 310 KGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSP 369
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
DVP+L + +G F+ +Y E K K + A L+ +++ L +TG W+TFK
Sbjct: 370 ADVPELVDLWGDAFDAAYRAAE-----AKGLARKTMPARELYGRMMRTLAQTGQGWMTFK 424
Query: 350 DACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLK 407
DA N + Q + ++HSSNLCTEI T E VCNLGS+NL + NG +D +L
Sbjct: 425 DASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLD 484
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA
Sbjct: 485 STVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARAL 544
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
+ + E I AY AS +LAE G ++ + +G+L D + +
Sbjct: 545 STKISERIMLAAYEASCDLAERSGPLPAWSKTRAARGVLHPD------------HYATEL 592
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
+ W LR R+ K GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 593 NWPDRWDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFL 652
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
++N YLV ELKK G+WD L+ G++ + IP+D+R +Y TA+EI +I+
Sbjct: 653 QVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMA 712
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI 707
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A ++
Sbjct: 713 AARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGQAS 772
Query: 708 DSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ L +Q+ I + + CE+CQ
Sbjct: 773 AAAPL----------PVQQASAPDADAIACSLENPESCEACQ 804
>gi|326776717|ref|ZP_08235982.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
griseus XylebKG-1]
gi|326657050|gb|EGE41896.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
griseus XylebKG-1]
Length = 804
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/762 (39%), Positives = 429/762 (56%), Gaps = 50/762 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + A
Sbjct: 80 ISEDPAYSRLAARLLTRTIADEAAGQGATS----------FSASVAVGHREGLIADRTAA 129
Query: 61 FNL-------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F L+ AL D +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 130 FVALHATALDQLVGQALTDGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAA 189
Query: 112 GLSLNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIF 169
GL+ +ES R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 190 GLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIY 249
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+R
Sbjct: 250 DRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRR 309
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFSP
Sbjct: 310 KGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSP 369
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
DVP+L + +G F+ +Y E K K + A L+ +++ L +TG W+TFK
Sbjct: 370 ADVPELVDLWGDAFDAAYRAAE-----AKGLARKTMPARELYGRMMRTLAQTGQGWMTFK 424
Query: 350 DACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLK 407
DA N + Q + ++HSSNLCTEI T E VCNLGS+NL + NG +D +L
Sbjct: 425 DASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLD 484
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA
Sbjct: 485 ATVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARAL 544
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
+ + E I AY AS +LAE G ++ + +G+L D + +
Sbjct: 545 STKISERIMLAAYEASCDLAERSGPLPAWSRTRAARGVLHPD------------HYATEL 592
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
+ W LR R+ K GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 593 NWPDRWDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFL 652
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
++N YLV ELKK G+WD L+ G++ + IP+D+R +Y TA+EI +I+
Sbjct: 653 QVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMA 712
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI 707
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A ++
Sbjct: 713 AARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGQAS 772
Query: 708 DSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ L +Q+ I + + CE+CQ
Sbjct: 773 AAAPL----------PVQQASAPDADAIACSLENPESCEACQ 804
>gi|408529355|emb|CCK27529.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
davawensis JCM 4913]
Length = 781
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/705 (41%), Positives = 422/705 (59%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E + + F++ + G L+ + AE
Sbjct: 71 ISEDPAYSRLAARLLTISIAAEAASQGVVS----------FTESVAVGHREGLIADRTAE 120
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 121 FVRIHAERLDALVDSGADDRFGYFGLRTLHSRYLLRHPITRKVVETPQHFMLRVAAGLAE 180
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 181 DDTTRALNEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPMDELDSIYDRYH 240
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 241 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 300
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + + W+LFSP DVP
Sbjct: 301 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNEDAQWSLFSPADVP 360
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E+ L + K I+A L+ +++ L +TG+ W+TFKDA N
Sbjct: 361 ELVDLWGEEFDAAYRRAED-AGLAR----KTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 415
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + ++HSSNLCTEI T E VCNLGS+NL + NG +D +L T+R
Sbjct: 416 RTANQTALPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGDIDWERLDATVR 475
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A SN + RPVGLG MG QD +++P+ S EA + +
Sbjct: 476 TAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRI 535
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE G +++ + QG+L D + ++
Sbjct: 536 AERIMLAAYEASADLAERNGPLPAWEKTRTAQGVLHPD------------HYDAELTWPE 583
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR+RI GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 584 RWAALRSRIAGTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 643
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV +LK+ G+WD L+ +G++ IP+D+R++Y TA+EI +I+ + R
Sbjct: 644 YLVNDLKELGVWDARTREALREANGSVQDFVWIPEDVRRLYRTAWEIPQRGLIDMAAART 703
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 704 PFLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 748
>gi|365866749|ref|ZP_09406353.1| putative ribonucleoside-diphosphate reductase large subunit
[Streptomyces sp. W007]
gi|364003828|gb|EHM24964.1| putative ribonucleoside-diphosphate reductase large subunit
[Streptomyces sp. W007]
Length = 773
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/710 (42%), Positives = 415/710 (58%), Gaps = 42/710 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + A
Sbjct: 49 ISEDPAYSRLAARLLTRTIADEAAGQGATS----------FSASVAVGHREGLIADRTAA 98
Query: 61 FNL-------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F L+ AL D +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 99 FVALHSAALDRLVEQALADGADDRFGYFGLRTLHSRYLLRHPLTRQVIETPQHFMLRVAA 158
Query: 112 GLSLNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIF 169
GL+ +ES R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 159 GLAEDESARALDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIY 218
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+R
Sbjct: 219 DRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRR 278
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFSP
Sbjct: 279 KGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSP 338
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
DVP+L + +G F+ +Y E K + I A L+ +++ L +TG W+TFK
Sbjct: 339 ADVPELVDLWGDAFDAAYRAAE-----AKGLARRTIPARELYGRMMRTLAQTGQGWMTFK 393
Query: 350 DACNIRSPQQHVG---IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKL 406
DA N R+ Q ++HSSNLCTEI T E VCNLGS+NL + +G +D +L
Sbjct: 394 DASN-RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVADGSIDWDRL 452
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA
Sbjct: 453 DATVRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARA 512
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
+ + E I AY AS +LAE G ++ + +G+L D ++N
Sbjct: 513 LSTRISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYA----------TELN 562
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
E W LR RI K GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 563 WPE--RWDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEF 620
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
++N YLV ELK+ G+WD L+ G++ + IP+D+R +Y TA+EI +I+
Sbjct: 621 LQVNAYLVDELKQLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDM 680
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 681 AAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 730
>gi|239990629|ref|ZP_04711293.1| putative ribonucleoside-diphosphate reductase large subunit
[Streptomyces roseosporus NRRL 11379]
gi|291447644|ref|ZP_06587034.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
roseosporus NRRL 15998]
gi|291350591|gb|EFE77495.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
roseosporus NRRL 15998]
Length = 807
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 303/711 (42%), Positives = 420/711 (59%), Gaps = 44/711 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + A
Sbjct: 83 ISEDPAYSRLAARLLTLSIADEAAGQGATS----------FSASVAVGHREGLIADRTAA 132
Query: 61 FNLSLLSNAL--LPERDL------QFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIA 110
F + L + AL L ER L +F Y GL+ L+ RY L R IE PQ F +R+A
Sbjct: 133 F-VELHAKALDELVERTLAEGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVA 191
Query: 111 MGLSLNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGI 168
GL+ +ES R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I
Sbjct: 192 AGLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSI 251
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+
Sbjct: 252 YDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGR 311
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
RKGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFS
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 371
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P DVP+L + +G F+ +Y E K K + A L+ +++ L +TG W+TF
Sbjct: 372 PADVPELVDLWGDAFDAAYRAAE-----AKGLARKTMPARELYGRMMRTLAQTGQGWMTF 426
Query: 349 KDACNIRSPQQHVG---IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIK 405
KDA N R+ Q ++HSSNLCTEI T+ E VCNLGS+NL + NG +D +
Sbjct: 427 KDASN-RTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVANGSIDWDR 485
Query: 406 LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAI 465
L T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA
Sbjct: 486 LDSTVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAR 545
Query: 466 KFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKV 525
+ + E I AY AS +LAE G ++ + +G+L D ++
Sbjct: 546 ALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYD----------TEL 595
Query: 526 NMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE 585
N E W LR R+ K GMRNS +AIAPTATI++I GV IEP NL + LSGE
Sbjct: 596 NWPE--RWDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGE 653
Query: 586 FTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIE 645
F ++N YLV ELKK G+WD L+ G++ + IP+D+R +Y TA+EI +I+
Sbjct: 654 FLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLID 713
Query: 646 AGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 714 MAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 764
>gi|302554046|ref|ZP_07306388.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302471664|gb|EFL34757.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 793
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/707 (41%), Positives = 421/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F++ + G L+ + AE
Sbjct: 79 ISEDPAYSRLAARLLTIGIRAEAASQGVTS----------FTESVVVGHREGLIADRTAE 128
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + P D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 129 FVRLHAARLDALIDPAADDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVAAGLAE 188
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+ + R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 189 DHTARSVDEVAALYELMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYH 248
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 249 QVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 308
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG+D RRTH++N+A WVPD FM+RV + W+LFSP DVP
Sbjct: 309 AVYLETWHSDVEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFSPSDVP 368
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E + L K + + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 369 ELVDLWGEEFDTAYRAAEAK-GLAK----RTLPARELYGRMMRTLAQTGNGWMTFKDAAN 423
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKT 409
+ Q + ++HSSNLCTEI TS E VCNLGS+NL + G LD +L T
Sbjct: 424 RTANQTAEPGHVVHSSNLCTEILEVTSDGETAVCNLGSVNLGAFVDTSTGDLDWDRLDAT 483
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 484 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRLPFDSPEAKALST 543
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS +LAE G +++ + +G+L D + V ++
Sbjct: 544 RIAERIMLAAYEASADLAERSGPLPAWEKTRTARGVLHPD------------HYDVELTW 591
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR RI GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 592 PERWAALRERIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 651
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV ELK+ G+WD L+ G++ + IP+D+R +Y TA+EI +I+ +
Sbjct: 652 NSYLVDELKRLGVWDARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAA 711
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQSQSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 712 RTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 758
>gi|345009209|ref|YP_004811563.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
violaceusniger Tu 4113]
gi|344035558|gb|AEM81283.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
violaceusniger Tu 4113]
Length = 804
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/711 (41%), Positives = 424/711 (59%), Gaps = 42/711 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL I +E G+ FS + G LL AE
Sbjct: 74 IAEEPEYSRLAARLLALTITEEAAGQGAVS----------FSTSVQVGHREGLLADSTAE 123
Query: 61 FNL-------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F +L+ AL D +F Y GL+ LY RY L R IE PQ F +R+A
Sbjct: 124 FAAAHAARLDALVERALADGADKRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVAC 183
Query: 112 GLSLNESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIF 169
GL+ + S R + + Y L S+ +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 184 GLAEDLSERALDDVAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIY 243
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKR 229
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFL+ ++ AVNQGG+R
Sbjct: 244 NRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRR 303
Query: 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
KGA C YLETWH D+EEF+ELR NTG++ RRTH++NIA W+PD FM+RV + W+LFSP
Sbjct: 304 KGAACVYLETWHADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSP 363
Query: 290 YDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349
D P L + +G EF+ +Y E + + K++ A L+ +++ L +TG+ W+TFK
Sbjct: 364 VDAPALVDLWGDEFDAAYRKAEAEG-----RAVKQVPARQLYARMMRTLAQTGNGWMTFK 418
Query: 350 DACNIRSPQQHVG---IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIK 405
DA N R+ Q ++HSSNLCTEI T+ E VCNLGS+NL H+ ++G++D +
Sbjct: 419 DAAN-RTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLDEDGQVDWER 477
Query: 406 LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAI 465
L T+ A+ LD V+DIN+Y +A SN R RPVGLG+MG QD +++P+ S EA
Sbjct: 478 LDATVHTAVTFLDRVVDINFYPTDEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAK 537
Query: 466 KFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKV 525
+ + E I AY AS ELAE G + ++ + +G+L D Y
Sbjct: 538 ALSTRISERIMLAAYEASCELAERHGPHPAWSETRTARGVLHPD-----------HYTDA 586
Query: 526 NMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE 585
+ W+ LR R+ K GMRNS +AIAPTATI++I GV IEP NL + LSGE
Sbjct: 587 VATWPERWEALRTRMAKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGE 646
Query: 586 FTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIE 645
F ++N YLV +LKK G+WD L+ +G++ + S +P D+R +Y TA+EI +IE
Sbjct: 647 FLQVNSYLVDDLKKLGVWDAHTREALRESNGSVQEFSWVPADVRDLYRTAWEIPQRALIE 706
Query: 646 AGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++++ + KL Y AW RG+KTTYYLRS A
Sbjct: 707 MAAARTPYLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPAT 757
>gi|408826316|ref|ZP_11211206.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
somaliensis DSM 40738]
Length = 784
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/755 (39%), Positives = 435/755 (57%), Gaps = 45/755 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ + ++ D L
Sbjct: 69 IAEDPAYSRLAARLLARTIADEAAGQGAVAFSASVAAGHREGLIADRTAD-------LVA 121
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNES 118
+ + L + PE D +F Y GL+ LY RY L R +E PQ F +R+A GL+ ++S
Sbjct: 122 RHAARLDAVIDPEADDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFLLRVACGLAEDDS 181
Query: 119 NREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+R ++ Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+ + A
Sbjct: 182 DRALGEVEALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYGRYHQVA 241
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA Y
Sbjct: 242 RLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVY 301
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV + W+LFSP DVP+L
Sbjct: 302 LETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVSDDAEWSLFSPSDVPELV 361
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+EF+ +Y E + L + + + A L+ +++ L +TG+ W+TFKDA N +
Sbjct: 362 DLWGEEFDAAYRAAEAR-GLAR----RTMPARDLYGRMMRTLAQTGNGWMTFKDAANRTA 416
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +HSSNLCTEI T E VCNLGS+NL + G +D +L +T+R A+
Sbjct: 417 NQTAEPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVTGGGMDWERLDETVRTAV 476
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD V+DIN+Y ++A SN R RPVGLG+MG QD +++P+ S EA + + E
Sbjct: 477 TFLDRVVDINFYPTEEAARSNTRWRPVGLGVMGLQDVFFKLRLPFDSPEARALSTRIAER 536
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I AY AS +LAE G ++D + +G+L D + V + W
Sbjct: 537 IMLAAYGASADLAERSGPLPAWDKTRTARGVLHPD------------HYDVEPAWPERWA 584
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++N YLV
Sbjct: 585 ALRERIASVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLV 644
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+LK+ G+WD L+ +G++ + +P ++R++Y TA+EI +I+ + R ++
Sbjct: 645 DDLKELGVWDAQTREALREANGSVQGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFL 704
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN+++ + KL Y AW +GLKTTYYLRS A ++ + V + +
Sbjct: 705 DQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAASAATV-PVPVQQ 763
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+S + + + + CE+CQ
Sbjct: 764 VS--------------EPDAVACSLENPESCEACQ 784
>gi|117928931|ref|YP_873482.1| ribonucleoside-diphosphate reductase subunit alpha [Acidothermus
cellulolyticus 11B]
gi|117649394|gb|ABK53496.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
cellulolyticus 11B]
Length = 781
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/757 (38%), Positives = 445/757 (58%), Gaps = 49/757 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL I+KEV + I FS+ I G L+ + A
Sbjct: 66 IAEEPQYSKLAARLLAAYIEKEVHNQGIAS----------FSQSIALGHAEGLIGDETAR 115
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F N A+ P+ D +F Y GL+ +YDRY L R IE PQ+F +R+A GL+
Sbjct: 116 FVKDNARKFDFAIDPKGDQRFEYFGLRTVYDRYLLRHPTSRLVIETPQYFLLRVACGLAR 175
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKE 174
+ AI+FY L+S ++ S+ TLFNSGT Q+SSCYL P D+L I+ +
Sbjct: 176 TPAE----AIEFYRLMSELAYLPSSATLFNSGTRHPQMSSCYLVDSPRDELDSIYARYHQ 231
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
A LSK+AGG+G +++VRS G+ I+GTNG S G++PFLK ++ AVNQGG+RKGA C
Sbjct: 232 VARLSKFAGGIGIGFSRVRSRGALIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAC 291
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH DIEEF+ELR NTG+D RRT+++N+A W+PD FM+RV W+L P P+
Sbjct: 292 VYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADELWSLIDPDQAPE 351
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G +F+ +Y E + + +++ A L+ K++ L ETG+ W+TFKDACN
Sbjct: 352 LVDLWGADFDAAYRRAEAEG-----RYVRQVRARDLYAKMMRTLAETGNGWMTFKDACNA 406
Query: 355 RSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
+ Q + ++H SNLCTEI +EI VCNLGSINL H+++G +D +L++T++I
Sbjct: 407 KCNQTGRPGNVVHLSNLCTEIVEVNRDDEIAVCNLGSINLARHVRDGAVDWDRLRRTVQI 466
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+ +LD V+DIN+Y +A SN + RP+GLG+MG QD +++P+ S EA++ + +
Sbjct: 467 AVPLLDRVVDINFYPTPEAARSNEKWRPIGLGVMGLQDVFFALRLPFDSGEALELSTRIA 526
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I A S ELA E G + ++ + G L D V ++
Sbjct: 527 EEIYLTALEVSAELAAEYGPHPAFPETRAAAGYLQPD------------LWGVTPTQQER 574
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
+ ++ RI G+RNS +AIAPTATI++I G SIEP NL + LSGEF ++N
Sbjct: 575 YAAIKERIAAVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRETLSGEFLQVNTA 634
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV ELK +GLW + + +K DG++ ++ +P+++R+++ TA+E+ +I+ + R
Sbjct: 635 LVNELKTRGLWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQKALIDLAAARGP 694
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
+IDQSQSLN++++ + KL Y+ AW GLKTTYYLRS A +++ + +
Sbjct: 695 YIDQSQSLNLFMAAPTISKLSSMYRYAWASGLKTTYYLRSRPATRIQQAT----VTVTSS 750
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
D++ +++ + K + + + CE CQ
Sbjct: 751 DDV------RDVMANPSTSKPATSCSLENPETCEVCQ 781
>gi|422574824|ref|ZP_16650372.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL001PA1]
gi|314924365|gb|EFS88196.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL001PA1]
Length = 856
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/714 (37%), Positives = 434/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|408680595|ref|YP_006880422.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Streptomyces venezuelae ATCC 10712]
gi|328884924|emb|CCA58163.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Streptomyces venezuelae ATCC 10712]
Length = 792
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/701 (42%), Positives = 417/701 (59%), Gaps = 36/701 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + AE
Sbjct: 73 IAEDPAYSRLAARLLTVTIADEAAGQGAFS----------FSASVAVGHREGLIADRTAE 122
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + P D +F Y GL+ LY RY L R IE PQ F +R+A GL+
Sbjct: 123 FVALHADRLDATIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLRVACGLAE 182
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 183 DDSVRALDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYH 242
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 243 QVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 302
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 303 AVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVP 362
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E L + K + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 363 ELVDLWGEEFDAAYRKAE-AAGLAR----KTMPARDLYGRMMRTLAQTGNGWMTFKDASN 417
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +HSSNLCTEI T E VCNLGS+NL + +D +L T+R
Sbjct: 418 RTANQTAEPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGSDIDWERLDATVR 477
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +K+P+ S EA + +
Sbjct: 478 TAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRI 537
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE G +++ + +G+L D + V ++
Sbjct: 538 AERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPD------------HYDVELNWPE 585
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR RI GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 586 RWAALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 645
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV ELKK G+WD L+ +G+++ + +P ++R++Y TA+EI +I+ + R
Sbjct: 646 YLVDELKKLGVWDAQTREALRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAART 705
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS
Sbjct: 706 PFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 746
>gi|50843559|ref|YP_056786.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes KPA171202]
gi|282854886|ref|ZP_06264220.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes J139]
gi|335055395|ref|ZP_08548178.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium sp. 434-HC2]
gi|386070293|ref|YP_005985189.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes ATCC 11828]
gi|387504473|ref|YP_005945702.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes 6609]
gi|422389143|ref|ZP_16469240.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL103PA1]
gi|422455169|ref|ZP_16531845.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL030PA1]
gi|422458257|ref|ZP_16534913.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL050PA2]
gi|422465671|ref|ZP_16542263.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA4]
gi|422469598|ref|ZP_16546120.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA3]
gi|422565623|ref|ZP_16641270.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL082PA2]
gi|50841161|gb|AAT83828.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium
acnes KPA171202]
gi|282582032|gb|EFB87415.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes J139]
gi|314965891|gb|EFT09990.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL082PA2]
gi|314981612|gb|EFT25705.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA3]
gi|315092252|gb|EFT64228.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA4]
gi|315104691|gb|EFT76667.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL050PA2]
gi|315107753|gb|EFT79729.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL030PA1]
gi|327328670|gb|EGE70430.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL103PA1]
gi|333762043|gb|EGL39558.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium sp. 434-HC2]
gi|335278518|gb|AEH30423.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes 6609]
gi|353454660|gb|AER05179.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes ATCC 11828]
Length = 856
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/714 (37%), Positives = 434/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|238061573|ref|ZP_04606282.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
sp. ATCC 39149]
gi|237883384|gb|EEP72212.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
sp. ATCC 39149]
Length = 792
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/713 (40%), Positives = 418/713 (58%), Gaps = 41/713 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++P YS++ ARLL + KEV G+++ ++Y L+ A
Sbjct: 87 ISEEPQYSKLAARLLAAYVDKEVRGQQVASFSQSVRYAHGLG----------LIGDDTAA 136
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F N L +A+ P DL+F Y GL+ + DRY L R +E PQ++ +R+A GLS
Sbjct: 137 FVARNARKLDDAVDPAGDLRFEYFGLRTVADRYLLRQPESRLVVETPQYWLLRVACGLSE 196
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKE 174
+ AI FY L+SS ++ S+PTLFNSGT +Q+SSC+L P D+L I+E +
Sbjct: 197 TPAE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYERYHQ 252
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
A LSK++GG+G W++VR G+ I+GTNGRS G++PFLK ++ AVNQGG+RKGA C
Sbjct: 253 VAKLSKFSGGIGIAWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAAC 312
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH DIEEF+ELR NTG++ RRTH++N+A W+PD FM+RV W+L P D P+
Sbjct: 313 VYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLIDPSDAPE 372
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G+EF+ +Y ++ + K + + A L+ +++ L +TG+ W+TFKD N
Sbjct: 373 LPDLYGEEFDAAY-------RIAEKKAIRTVKARDLYGRMMRTLAQTGNGWMTFKDPSNR 425
Query: 355 RSPQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
S Q V IH SNLCTEI S E VCNLGSINL H+ +D +KL+ T+R
Sbjct: 426 LSNQTGVPGNTIHLSNLCTEILEVNSDTETAVCNLGSINLGAHVTVDGVDWVKLRSTVRT 485
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+ LD VIDINYY +A SN R RPVGLG+MG QD +++P+ S A + + +
Sbjct: 486 AVVFLDRVIDINYYPATQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAAARELSTRVQ 545
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I A S L+E G + +Y + +G L D V +++
Sbjct: 546 EEIFLTALETSAGLSERFGPHPAYAETRAARGELHPD------------LWGVEPTQTER 593
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W LR I G+RNS VAIAPTATI++I G IEP NL + +SGEF +IN Y
Sbjct: 594 WAALRATIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTY 653
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV+ELK GLW + +K +G++ I +P D+R+++ TA+E+ +I+ + R
Sbjct: 654 LVRELKAHGLWTPQIRDQIKRAEGSVQGIDDLPADVRELFRTAWELPQRTLIDLAAARAP 713
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
+IDQSQSLN+++S + KL Y AW GLKTTYYLRS A +++ +
Sbjct: 714 YIDQSQSLNLFLSAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAV 766
>gi|291437352|ref|ZP_06576742.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
[Streptomyces ghanaensis ATCC 14672]
gi|291340247|gb|EFE67203.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
[Streptomyces ghanaensis ATCC 14672]
Length = 793
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 294/707 (41%), Positives = 421/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 73 ISEDPAYSRLAARLLAIGIRAEAASQGVTS----------FTGSVATGHREGLIADRTAA 122
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 123 FVRLHADRLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRKVVETPQHFLLRVAAGLAE 182
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 183 DDSVRSVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYH 242
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 243 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 302
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV W+LFSP DVP
Sbjct: 303 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFSPADVP 362
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ Y E + L + K + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 363 ELVDLWGEEFDAVYRAAEEK-GLAR----KTLPARELYGRMMRTLAQTGNGWMTFKDAAN 417
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKT 409
+ Q +IHSSNLCTEI T E VCNLGS+NL + G +D +L +T
Sbjct: 418 RTANQTATPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDRT 477
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 478 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEARTLST 537
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS +LAE+KG +++ + +G+L D + V+++
Sbjct: 538 RIAERIMLAAYEASADLAEDKGPLPAWEKTRTARGVLHPD------------HYDVDLTW 585
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR RI G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 586 PERWVALRGRIASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 645
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV +LK+ G+WDE L+ G++ + IPDD+R++Y TA+EI +I+ +
Sbjct: 646 NSYLVSDLKRLGVWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAA 705
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 706 RTPFLDQAQSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 752
>gi|419419993|ref|ZP_13960222.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes PRP-38]
gi|422394386|ref|ZP_16474427.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL097PA1]
gi|327335277|gb|EGE76987.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL097PA1]
gi|379978367|gb|EIA11691.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes PRP-38]
Length = 856
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/714 (37%), Positives = 435/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F ++P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLNPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|422463238|ref|ZP_16539854.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL060PA1]
gi|315094825|gb|EFT66801.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL060PA1]
Length = 856
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/714 (37%), Positives = 434/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|342213318|ref|ZP_08706043.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium sp. CC003-HC2]
gi|422494876|ref|ZP_16571170.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL025PA1]
gi|313813766|gb|EFS51480.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL025PA1]
gi|340768862|gb|EGR91387.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium sp. CC003-HC2]
Length = 856
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/714 (37%), Positives = 434/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLATHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|289426031|ref|ZP_06427778.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK187]
gi|365963737|ref|YP_004945303.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes TypeIA2 P.acn31]
gi|365965977|ref|YP_004947542.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes TypeIA2 P.acn17]
gi|365974918|ref|YP_004956477.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes TypeIA2 P.acn33]
gi|422426378|ref|ZP_16503300.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL087PA1]
gi|422431581|ref|ZP_16508454.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL059PA2]
gi|422434074|ref|ZP_16510936.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL083PA2]
gi|422437423|ref|ZP_16514270.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL092PA1]
gi|422442188|ref|ZP_16518992.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL002PA1]
gi|422444997|ref|ZP_16521753.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL027PA1]
gi|422450692|ref|ZP_16527406.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL030PA2]
gi|422452517|ref|ZP_16529215.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL087PA3]
gi|422492621|ref|ZP_16568926.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL086PA1]
gi|422499153|ref|ZP_16575421.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL063PA2]
gi|422509650|ref|ZP_16585805.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL059PA1]
gi|422515057|ref|ZP_16591174.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA2]
gi|422522964|ref|ZP_16598980.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL053PA2]
gi|422530702|ref|ZP_16606660.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA1]
gi|422540095|ref|ZP_16615967.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL013PA1]
gi|422541972|ref|ZP_16617828.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL037PA1]
gi|422543460|ref|ZP_16619305.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL082PA1]
gi|422546966|ref|ZP_16622789.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL050PA3]
gi|422549088|ref|ZP_16624892.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL050PA1]
gi|422557409|ref|ZP_16633153.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL025PA2]
gi|422561870|ref|ZP_16637549.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL046PA1]
gi|422569383|ref|ZP_16644994.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL067PA1]
gi|422577540|ref|ZP_16653070.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA4]
gi|289153574|gb|EFD02288.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK187]
gi|313763765|gb|EFS35129.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL013PA1]
gi|313793688|gb|EFS41719.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA1]
gi|313802999|gb|EFS44207.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL110PA2]
gi|313816917|gb|EFS54631.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL059PA1]
gi|313829719|gb|EFS67433.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL063PA2]
gi|313839373|gb|EFS77087.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL086PA1]
gi|314916475|gb|EFS80306.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA4]
gi|314918861|gb|EFS82692.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL050PA1]
gi|314921070|gb|EFS84901.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL050PA3]
gi|314932315|gb|EFS96146.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL067PA1]
gi|314956589|gb|EFT00841.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL027PA1]
gi|314959471|gb|EFT03573.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL002PA1]
gi|314964863|gb|EFT08963.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL082PA1]
gi|314968631|gb|EFT12729.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL037PA1]
gi|315079175|gb|EFT51178.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL053PA2]
gi|315100240|gb|EFT72216.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL059PA2]
gi|315102564|gb|EFT74540.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL046PA1]
gi|315109518|gb|EFT81494.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL030PA2]
gi|327455889|gb|EGF02544.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL087PA3]
gi|327456019|gb|EGF02674.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL092PA1]
gi|327458041|gb|EGF04696.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL083PA2]
gi|328757203|gb|EGF70819.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL087PA1]
gi|328757584|gb|EGF71200.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL025PA2]
gi|365740418|gb|AEW84620.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes TypeIA2 P.acn31]
gi|365742658|gb|AEW82352.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes TypeIA2 P.acn17]
gi|365744917|gb|AEW80114.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes TypeIA2 P.acn33]
Length = 856
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/714 (37%), Positives = 434/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TEITGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|383315472|ref|YP_005376314.1| ribonucleoside-diphosphate reductase subunit alpha [Frateuria
aurantia DSM 6220]
gi|379042576|gb|AFC84632.1| ribonucleoside-diphosphate reductase, alpha subunit [Frateuria
aurantia DSM 6220]
Length = 816
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/712 (41%), Positives = 423/712 (59%), Gaps = 37/712 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y Q+ ARLL I KEV G+EI+ FS+ + +G++ +LN +L +F
Sbjct: 98 EEPEYGQLAARLLGAFIDKEVSGQEIQS----------FSQSVARGVELGILNDRLRDFV 147
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRI--EMPQFFFMRIAMGLSLNE 117
+ L++A+ + +F Y GL+ +YDRY L R+ E P +FFMRIA L +
Sbjct: 148 ALHARKLNDAIDLDTTRRFEYFGLRTVYDRYLLRHPQSRLVLETPTYFFMRIACALGGGD 207
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
++ Y LLSS ++ S+PTLFN+GT QLSSC+L P D L I++ + A
Sbjct: 208 IGE---TLELYRLLSSLEYLASSPTLFNAGTTHEQLSSCFLLDSPTDSLESIYDKYADVA 264
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK+AGG+G +++VRS GS I+GTNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 265 KLSKFAGGIGLAYSRVRSRGSLIRGTNGHSNGLVPWLKTLDASVAAVNQGGKRKGAACVY 324
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIEEF+ELR NTGD RRTH++N+A WVPD FM+RV W+LF P VP
Sbjct: 325 LETWHADIEEFLELRDNTGDHERRTHNLNLANWVPDEFMRRVETDGNWSLFDPKIVPHFV 384
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ FE +Y E + K + A L+ ++L L +TG+ W+TFKD N S
Sbjct: 385 DTWGETFEAAYRKAEAEG-----LAVKTVKARDLYARMLRTLAQTGNGWMTFKDRANATS 439
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI T+ E VCNLGS+NL+ H+++G + +L T+R A+
Sbjct: 440 NQTARPENVIHLSNLCTEILEVTNAQETAVCNLGSVNLSRHVQDGVFNFEQLGTTVRTAV 499
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID+N+Y + A +N + RPVGLG+MG QD +++ + S EA+ + + E
Sbjct: 500 RQLNRVIDLNFYPIDTAAVANRKWRPVGLGLMGLQDVFFKLRLAFDSPEALDLSSRISEE 559
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y+A S E+AE+ G + + + G L D + K + +++ W
Sbjct: 560 IYYHALAQSCEIAEQDGAHPGFPETRAANGELQFD-----------YWPKASQADTARWD 608
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +IK+ G+RNS +AIAPTATI++I G IEP NL + LSG+F +NRYL
Sbjct: 609 ALREKIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLVVNRYLS 668
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK GLW + +K +G++ I IP+ LR IY T +E+ +IE + R +I
Sbjct: 669 NELKALGLWTAEIRDQIKLAEGSIQGIMAIPERLRLIYRTTWELPQKALIELAAARSAYI 728
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQSQSLN+++ N + +L Y AW GLKTTYYLRS A K+ MG
Sbjct: 729 DQSQSLNLFMENPNIGQLSSMYMYAWKSGLKTTYYLRSRPATKIAKTTVGMG 780
>gi|115378662|ref|ZP_01465812.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
aurantiaca DW4/3-1]
gi|115364328|gb|EAU63413.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
aurantiaca DW4/3-1]
Length = 800
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/710 (40%), Positives = 433/710 (60%), Gaps = 39/710 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y++++ARLL IQKEV +EI FS+ + G + L+ +L +F
Sbjct: 69 EEPEYARLSARLLDTFIQKEVSNQEIHS----------FSQSVAAGHKHGLIADRLLQFV 118
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L+ A+ R+ F Y GL+ +YDRY L R IE PQ FF+R+A L+
Sbjct: 119 QANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQDFFLRVACALT--- 175
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ K AI+ Y L SS ++ S+PTLFN+GT QLSSC+L P D+L I+ + A
Sbjct: 176 -DTAKDAIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPSDELESIYRKYTDIA 234
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + +VR+ GS I+ TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 235 MLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGACCVY 294
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RRTH++N+A WV DLFM+RV W+LF P VP L
Sbjct: 295 LETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQEWSLFDPKTVPHLT 354
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ FE +Y + +K+ A L+ +++ L +TG+ W+TFKD N +S
Sbjct: 355 DLYGEAFERAY-----AAAEAQGLAARKVKARDLYARMMKTLAQTGNGWMTFKDISNRKS 409
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI T+ +E VCNLGS+NL + +GK D +L+ +++A+
Sbjct: 410 NQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGKFDFERLRVNVQLAI 469
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LD VID+NYY + A SN R RPVGLG+MG QD +++P+ + EA + + E
Sbjct: 470 RQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDAPEARALSKKISEE 529
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S +LAE+ G + ++ + G L D+ ++ + ++ W
Sbjct: 530 IYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPE------------DTARWA 577
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI+KFG+RNS +AIAPTATI++I G IEP NL + LSG+F ++N+YLV
Sbjct: 578 ALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNKYLV 637
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+EL+ GLW+++M + LK +G++ ++ +P +L+ IY TA+E+ +I+ + R +I
Sbjct: 638 RELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSLIDMAADRGAFI 697
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
DQSQSLN+++ + K+ Y AW +GLKTTYY+RS A K+ +
Sbjct: 698 DQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTTVD 747
>gi|383650824|ref|ZP_09961230.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
chartreusis NRRL 12338]
Length = 785
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/707 (41%), Positives = 422/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DPVYS++ ARLL I+ E + + + F++ + G L+ + A
Sbjct: 71 ISEDPVYSRLAARLLTIGIRAEAASQGVTR----------FTESVAVGHREGLIADRTAA 120
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ L+ RY L R +E PQ+F +R+A GL+
Sbjct: 121 FVRTHAARLDALIDTAADDRFGYFGLRTLHSRYLLRHPITRKVVETPQYFMLRVAAGLAE 180
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++++R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 181 DDTSRSVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYH 240
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 241 QVARLSKHAGGIGIAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 300
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV W+LFSP DVP
Sbjct: 301 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFSPSDVP 360
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E K K + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 361 ELVDLWGEEFDAAYRAAE-----AKGLARKTLPARELYGRMMRTLAQTGNGWMTFKDAAN 415
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKT 409
+ Q + ++HSSNLCTEI T E VCNLGS+NL + G +D +L +T
Sbjct: 416 RTANQTAEPGHVVHSSNLCTEILEVTGDGETAVCNLGSVNLGALVDRSGGDIDWERLDET 475
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG+MG QD +++P+ S EA + +
Sbjct: 476 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGVMGLQDVFFKLRLPFDSPEAKRLST 535
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS +LAE G +++ + +G+L D + V +
Sbjct: 536 RIAERIMLAAYEASADLAERNGPLPAWEKTRTAKGVLHPD------------HYDVQPTW 583
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR R+ GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 584 PERWAALRERVAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 643
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV+ELK+ G WD L+ +G++ + IP D+R +Y TA+EI +I+ +
Sbjct: 644 NSYLVEELKRLGAWDARTREALREANGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAA 703
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQSQSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 704 RTPFLDQSQSLNLFMETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 750
>gi|290957505|ref|YP_003488687.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
scabiei 87.22]
gi|260647031|emb|CBG70130.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
scabiei 87.22]
Length = 802
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 301/760 (39%), Positives = 437/760 (57%), Gaps = 49/760 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F++ I G L+ + AE
Sbjct: 81 ISEDPAYSKLAARLLAIGIRAEAASQGVTT----------FTESIAVGHREGLVADRTAE 130
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + P D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 131 FVRVHGARLDALVDPAGDDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVASGLAE 190
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 191 DDTPRAVDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYH 250
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 251 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 310
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+LFSP DVP
Sbjct: 311 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVP 370
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EFE +Y E L + K I+A L+ +++ L +TG+ W+TFKDA N
Sbjct: 371 ELVDLWGEEFEAAYRKAE-ANGLAR----KTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 425
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN--GKLDPIKLKKT 409
+ Q + ++HSSNLCTEI T E VCNLGS+NL + G LD +L +T
Sbjct: 426 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDLDWERLDET 485
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 486 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 545
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS +LAE G +++ + +G+L D + V +
Sbjct: 546 RIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPD------------HYGVEPAW 593
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
S W LR R+ GMRN+ +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 594 SERWAALRERVAATGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 653
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV++LK+ G+WD L+ +G++ + IP D+R +Y TA+EI +I+ +
Sbjct: 654 NSYLVRDLKELGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAA 713
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDS 709
R ++DQSQSLN+++ + KL Y AW GLKTTYYLRS A ++
Sbjct: 714 RTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARA----AQGQ 769
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
E ++ +E + + + CE+CQ
Sbjct: 770 ARQPETTVPVQQATSEEA-------LACSLENPESCEACQ 802
>gi|310823069|ref|YP_003955427.1| ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
DW4/3-1]
gi|309396141|gb|ADO73600.1| Ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
DW4/3-1]
Length = 841
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 291/710 (40%), Positives = 433/710 (60%), Gaps = 39/710 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P Y++++ARLL IQKEV +EI FS+ + G + L+ +L +F
Sbjct: 110 EEPEYARLSARLLDTFIQKEVSNQEIHS----------FSQSVAAGHKHGLIADRLLQFV 159
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L+ A+ R+ F Y GL+ +YDRY L R IE PQ FF+R+A L+
Sbjct: 160 QANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQDFFLRVACALT--- 216
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ K AI+ Y L SS ++ S+PTLFN+GT QLSSC+L P D+L I+ + A
Sbjct: 217 -DTAKDAIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPSDELESIYRKYTDIA 275
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
+LSK++GG+G + +VR+ GS I+ TNG S G++P+LK ++ AVNQGGKRKGA C Y
Sbjct: 276 MLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAVNQGGKRKGACCVY 335
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DIE+F+ELR NTGD+ RRTH++N+A WV DLFM+RV W+LF P VP L
Sbjct: 336 LETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQEWSLFDPKTVPHLT 395
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ FE +Y + +K+ A L+ +++ L +TG+ W+TFKD N +S
Sbjct: 396 DLYGEAFERAY-----AAAEAQGLAARKVKARDLYARMMKTLAQTGNGWMTFKDISNRKS 450
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI T+ +E VCNLGS+NL + +GK D +L+ +++A+
Sbjct: 451 NQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGKFDFERLRVNVQLAI 510
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R LD VID+NYY + A SN R RPVGLG+MG QD +++P+ + EA + + E
Sbjct: 511 RQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDAPEARALSKKISEE 570
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A S +LAE+ G + ++ + G L D+ ++ + ++ W
Sbjct: 571 IYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPE------------DTARWA 618
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI+KFG+RNS +AIAPTATI++I G IEP NL + LSG+F ++N+YLV
Sbjct: 619 ALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNKYLV 678
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+EL+ GLW+++M + LK +G++ ++ +P +L+ IY TA+E+ +I+ + R +I
Sbjct: 679 RELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSLIDMAADRGAFI 738
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
DQSQSLN+++ + K+ Y AW +GLKTTYY+RS A K+ +
Sbjct: 739 DQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTTVD 788
>gi|145596897|ref|YP_001161194.1| ribonucleoside-diphosphate reductase subunit alpha [Salinispora
tropica CNB-440]
gi|145306234|gb|ABP56816.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
tropica CNB-440]
Length = 909
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 293/761 (38%), Positives = 438/761 (57%), Gaps = 49/761 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL + KEV G+++ I+Y L++ + A F
Sbjct: 184 EEPQYSKLAARLLAAYVDKEVRGQQVASFSQSIRYAHGLG----------LISDETAAFV 233
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L +A+ P DL+F Y GL+ + DRY L R +E PQ++ +R+A GLS
Sbjct: 234 SRNARKLDDAVDPAGDLRFEYFGLRTVADRYLLRHPQSRLVVETPQYWLLRVACGLSGTP 293
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ AI FY L+SS ++ S+PTLFNSGT +Q+SSC+L P D+L I++ + A
Sbjct: 294 AE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYQRYHQVA 349
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G W++VR G+ I+GTNGRS G++PFLK ++ AVNQGG+RKGA C Y
Sbjct: 350 KLSKFSGGIGIAWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVY 409
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+L P + P+L
Sbjct: 410 LEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLIDPSEAPELP 469
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+EF+ +Y + E K + + A L+ +++ L +TG+ W+TFKD N S
Sbjct: 470 DLYGEEFDAAYRVAEK-------KAVRTVKARDLYGRMMRTLAQTGNGWMTFKDRSNTLS 522
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + IH SNLCTEI + E VCNLGS+NL H+ +D KL+ T+R A+
Sbjct: 523 NQTGEPGNTIHLSNLCTEILEVNNDAETAVCNLGSVNLGAHVTADGVDWEKLRDTVRTAV 582
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD VIDINYY ++A SN R RPVGLG+MG QD +++P+ S EA + + + E
Sbjct: 583 VFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEASELSTRVQEE 642
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I A S LAE G + +Y + +G L + + S+ W
Sbjct: 643 IFLTALETSAGLAERFGPHPAYAQTRAARGDLHPELWGAVP------------SQPQRWA 690
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
L+ R+ + G+RNS VAIAPTATI++I G IEP NL + +SGEF ++N YLV
Sbjct: 691 GLKARVGEHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQVNTYLV 750
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK +GLW S+ +K +G++ ++ +P ++R+++ TA+E+ +I+ + R +I
Sbjct: 751 GELKARGLWTASIRDQIKRAEGSVQGLAELPAEVRELFRTAWELPQRALIDLAAARAPYI 810
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN++++ + KL Y AW GLKTTYYLRS A +++ + + S
Sbjct: 811 DQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQAT--VAVTSTAQPG 868
Query: 715 ISIK------GYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+++ G ++ + + + CE+CQ
Sbjct: 869 VAVASSAQPGGAASSISGFAGTDAEALACSLENPESCEACQ 909
>gi|357411277|ref|YP_004923013.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
flavogriseus ATCC 33331]
gi|320008646|gb|ADW03496.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
flavogriseus ATCC 33331]
Length = 797
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 293/710 (41%), Positives = 414/710 (58%), Gaps = 42/710 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL + E G+ FS + G L+ + AE
Sbjct: 74 ISEDPSYSRLAARLLTRAVADEAAGQGAVS----------FSASVAVGHREGLIADRTAE 123
Query: 61 FNL-------SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F +L+ AL D +F Y GL+ L+ RY L R E PQ F +R+A
Sbjct: 124 FVTLHAAALDALVDRALADGADDRFGYFGLRTLHSRYLLRHPLTRQVTETPQHFMLRVAA 183
Query: 112 GLSLNESNR--EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGI 168
GL+ + S R E+ A Y L++ +++ S+PTLFNSGT Q+SSCYL P D+L I
Sbjct: 184 GLAEDTSERALEEVA-ALYGLMNRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPMDELDSI 242
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+
Sbjct: 243 YDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGR 302
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
RKGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A W+PD FM+RV + W+LFS
Sbjct: 303 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTQWSLFS 362
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P D P+L + +G EF+ +Y E K + + A L+ +++ L +TG W+TF
Sbjct: 363 PADAPELVDLWGDEFDAAYRAAE-----AKGLARRTLPARELYGRMMRTLAQTGQGWMTF 417
Query: 349 KDACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKL 406
KDA N + Q + ++HSSNLCTEI T E VCNLGS+NL + G +D +L
Sbjct: 418 KDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVAEGTIDWERL 477
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA
Sbjct: 478 DATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARA 537
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
+ + E I AY AS +LAE G ++ + +G+L D +
Sbjct: 538 LSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPD------------HYDTE 585
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
+ W LR R+ + GMRNS +AIAPTATI++I GV IEP NL + LSGEF
Sbjct: 586 LHWPERWDALRARVARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEF 645
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
++N YLV ELKK G+WD L+ G++ + IP+D+R +Y TA+EI +I+
Sbjct: 646 LQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDM 705
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+ R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 706 AAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 755
>gi|440698861|ref|ZP_20881183.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
turgidiscabies Car8]
gi|440278673|gb|ELP66667.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
turgidiscabies Car8]
Length = 788
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/707 (41%), Positives = 420/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL + E + + FS+ + G L+ + AE
Sbjct: 74 ISEDPAYSRLAARLLTVTVAAEAASQGVTT----------FSESVAVGHREGLIADRTAE 123
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + + D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 124 FVRLHTDRLDALIDVDGDDRFGYFGLRTLHSRYLLRHPITRRVIETPQHFMLRVASGLAE 183
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 184 DDTVRALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYH 243
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 244 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 303
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 304 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDSDALWSLFSPSDVP 363
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G EF+ +Y E + L + K I A L+ +++ L +TG+ W+TFKDA N
Sbjct: 364 ELVDLWGAEFDAAYRAAE-EAGLAR----KTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 418
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKT 409
+ Q + ++HSSNLCTEI T E VCNLGS+NL + G +D +L +T
Sbjct: 419 RTANQTAEPGSVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDET 478
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 479 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLRVPFDSPEARALST 538
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E + AY AS +LAE G +++ + +G+L D + V ++
Sbjct: 539 RIAERVMLAAYEASADLAERNGPLPAWEKTRTARGVLHPD------------HYDVELNW 586
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR RI + GMRNS +A+APTATI++I GV IEP NL + LSGEF ++
Sbjct: 587 PERWSALRERIAEVGMRNSLLLAVAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 646
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV+ELK G+WD L+ +G++ + IP D+R +Y TA+EI +I+ +
Sbjct: 647 NSYLVRELKDLGVWDARTREALRESNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAA 706
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQSQSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 707 RTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 753
>gi|418471849|ref|ZP_13041639.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
coelicoflavus ZG0656]
gi|371547526|gb|EHN75896.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
coelicoflavus ZG0656]
Length = 791
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/707 (40%), Positives = 420/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DPVYS++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 75 ISEDPVYSRLAARLLTIGIRAEAASQGVVA----------FTDSVATGHREGLIADRTAA 124
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + P D +F Y GL+ LY RY L R +E PQ F +R+A GL+
Sbjct: 125 FVRLHAARLDALVDPAADDRFGYFGLRTLYSRYLLRHPITRKTVETPQHFLLRVAAGLAE 184
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT +Q+SSCYL P D+L +++ +
Sbjct: 185 DDTVRSVDEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLH 244
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G +++VR+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 245 QVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 304
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG+D RRTH++N+A W+PD FM+RV TW+LFSP DVP
Sbjct: 305 AVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDTDGTWSLFSPADVP 364
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E + L + + + A L+ +++ L +TG+ W+TFKD N
Sbjct: 365 ELTDLWGEEFDAAYRRAE-EAGLAR----RTLPARELYGRMMRTLAQTGNGWMTFKDTAN 419
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPIKLKKT 409
+ Q ++HSSNLCTEI T E VCNLGS+NL + G +D +L T
Sbjct: 420 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAQGDMDWERLDAT 479
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 480 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 539
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY S +LAE G +++ + QG+L D + V +
Sbjct: 540 RIAERIMLAAYETSADLAERDGPLPAWEKTRTAQGVLHPD------------HYGVEPAW 587
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR R+ G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 588 PERWTALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 647
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV +LK+ G+WD L+ +G++ S IP+D+R +Y TA+EI +I+ +
Sbjct: 648 NSYLVDDLKRLGVWDARTREALREANGSVQGFSWIPEDVRALYRTAWEIPQRGLIDMAAA 707
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 708 RTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 754
>gi|443290855|ref|ZP_21029949.1| Ribonucleoside-diphosphate reductase large chain [Micromonospora
lupini str. Lupac 08]
gi|385886410|emb|CCH18023.1| Ribonucleoside-diphosphate reductase large chain [Micromonospora
lupini str. Lupac 08]
Length = 797
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 285/754 (37%), Positives = 444/754 (58%), Gaps = 53/754 (7%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNL 63
+P YS++ ARLL +++EV + + FS I G L+ + A F
Sbjct: 89 EPQYSRLAARLLASHVEREVRRQGVTS----------FSAAIRAGHAQGLIGDETAAFVA 138
Query: 64 S---LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRI--EMPQFFFMRIAMGLSLNES 118
+ L +A+ + D +F Y GL+ +YDRY L R+ E PQ++ +R+A GLS
Sbjct: 139 AHGRALDDAVDADGDRRFEYFGLRTVYDRYLLRHPTTRLVLETPQYWLLRVACGLSRTPD 198
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENAL 177
A+ FY L+SS ++ S+PTLFN+GT +Q+SSCYL P D+L I++ + A
Sbjct: 199 E----AVDFYRLMSSLAYLPSSPTLFNAGTRHTQMSSCYLVDSPRDELDSIYQRYAQVAN 254
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK+AGG+G +++VRS G+ I+GTNG+S G++P+L+ ++ AVNQGG+RKGA C YL
Sbjct: 255 LSKFAGGIGIAYSRVRSRGALIRGTNGQSNGIVPWLRTLDASVAAVNQGGRRKGAACVYL 314
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DIEEF++LR NTG+D RRTH++N+A W+PD FM+RV W+LF P +VP+L +
Sbjct: 315 EPWHPDIEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADEVWSLFDPDEVPELPD 374
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+ F+ +Y E Q + +++ A L+ K++ L +TG+ W+TFKDA N
Sbjct: 375 LWGERFDAAYRAAEAQG-----RYVRQLPARELYGKMMRTLAQTGNGWMTFKDAANRLCN 429
Query: 358 Q--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
Q + ++H SNLCTEI +S E VCNLGS+N+ H+ + +D +L+ T+R A+
Sbjct: 430 QTAEPGNVVHLSNLCTEIVEVSSDAETAVCNLGSVNVAAHLTDDGIDWPRLRATVRTAVT 489
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
LD VIDINYY +A SN R RPVGLG+MG QD +++P+ S A + + + E +
Sbjct: 490 FLDRVIDINYYPTPQAAASNPRWRPVGLGLMGLQDVFFALRLPFDSPAARELSTRISEEL 549
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
A S +LA + G + +Y + +G L D V+ +++ W
Sbjct: 550 YLTALETSADLARDFGAHPAYAQTRAARGQLQPD------------LWGVDGTQTARWAA 597
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR R+ +G+RNS VA+APTATI++I G +EP NL + LSGEF ++N LV+
Sbjct: 598 LRQRVGAYGLRNSLLVAVAPTATIASIAGCYECVEPQVSNLFKRETLSGEFLQVNTALVR 657
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
ELK +GLW E + + ++ +G++ ++ +P D+R+++ TA+E+ +I+ + R +ID
Sbjct: 658 ELKARGLWTEQIRSAIRRAEGSVQDVTELPADVRELFRTAWELPQRALIDLAAARAPFID 717
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEI 715
QSQSLN+++++ + KL Y AW GLKTTYYLRS A +++ + V + +
Sbjct: 718 QSQSLNLFLASPTIGKLSSMYLYAWKTGLKTTYYLRSRPATRIQQATVS-AVTPVAVGPV 776
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ + + L S + + CE+CQ
Sbjct: 777 AV------------DAEALACS-LENPESCEACQ 797
>gi|159040365|ref|YP_001539618.1| ribonucleoside-diphosphate reductase subunit alpha [Salinispora
arenicola CNS-205]
gi|157919200|gb|ABW00628.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
arenicola CNS-205]
Length = 821
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 286/711 (40%), Positives = 419/711 (58%), Gaps = 41/711 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL + KEV G+++ I+Y L++ A F
Sbjct: 89 EEPQYSKLAARLLAAYVDKEVRGQQVASFSQSIRYAHGLG----------LISDDTAAFV 138
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
N L +A+ P DL+F Y GL+ + DRY L R +E PQ++ +R+A G+S
Sbjct: 139 SRNARKLDDAVDPAGDLRFEYFGLRTVADRYLLRHPQSRLVVETPQYWLLRVACGMSRTP 198
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ AI FY L+SS ++ S+PTLFNSGT +Q+SSC+L P D+L I++ + A
Sbjct: 199 AE----AIGFYQLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYQRYHQVA 254
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G W++VR G+ I+GTNGRS G++PFLK ++ AVNQGG+RKGA C Y
Sbjct: 255 KLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVY 314
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+L P D P+L
Sbjct: 315 LEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLIDPSDAPELP 374
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EF+ +Y ++ + K + + A L+ +++ L +TG+ W+TFKD N S
Sbjct: 375 DLYGDEFDAAY-------RVAEKKAVRTVKARDLYGRMMRTLAQTGNGWMTFKDRSNTLS 427
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q Q IH SNLCTEI + E VCNLGS+NL H+ +D KL+ T+R A+
Sbjct: 428 NQTGQPANTIHLSNLCTEILEVNNDTETAVCNLGSVNLGAHVTVDGVDWEKLRATVRTAV 487
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD VIDINYY ++A SN R RPVGLG+MG QD +++P+ S EA + + + E
Sbjct: 488 VFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEASELSTRVQEE 547
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I A S LAE G + +Y + +G L D +++ W
Sbjct: 548 IFLTALETSAGLAERFGPHPAYAETRAARGDLHPD------------LWGATPTQTRRWA 595
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
L+ RI + G+RNS VAIAPTATI++I G IEP NL + +SGEF ++N YLV
Sbjct: 596 GLKARIAEHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQVNTYLV 655
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
ELK +GLW + ++ +G++ + +P ++R+++ TA+E+ +I+ + R +I
Sbjct: 656 GELKARGLWTAQIRDQIRRAEGSVQGLGELPAEVRELFRTAWELPQRALIDLAAARAPYI 715
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
DQSQSLN++++ + KL Y AW GLKTTYYLRS A +++ +
Sbjct: 716 DQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAV 766
>gi|395771543|ref|ZP_10452058.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
acidiscabies 84-104]
Length = 788
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/707 (41%), Positives = 420/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F++ ++ G L+ + AE
Sbjct: 74 ISEDPAYSRLAARLLTISIRAEAASQSVTT----------FTESVSVGHREGLIADRTAE 123
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L+ L P D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 124 FARLHATALNGLLDPAADDRFGYFGLRTLHSRYLLRHPITRKVIETPQHFLLRVASGLAE 183
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 184 DDTVRALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYH 243
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 244 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 303
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 304 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADAEWSLFSPSDVP 363
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G EF+ +Y E + L K K I A L+ +++ L +TG+ W+TFKDA N
Sbjct: 364 ELVDLWGDEFDAAYRAAEAK-GLAK----KTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 418
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK--LDPIKLKKT 409
+ Q + ++HSSNLCTEI T E VCNLGS+NL + +D +L +T
Sbjct: 419 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPASQDIDWERLDET 478
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD ++IP+ S EA + +
Sbjct: 479 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRIPFDSPEAKELST 538
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS LAE G +++ + +G+L D + V +
Sbjct: 539 RIAERIMLAAYEASATLAERSGPLPAWEKTRTARGVLHPD------------HFGVEFTW 586
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR RI G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 587 PERWAALRERIASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 646
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV++LK G+WD L+ +G++ IP D+R +Y TA+EI +I+ +
Sbjct: 647 NSYLVQDLKDLGVWDARTREALREANGSVQDFGWIPADVRALYRTAWEIPQRGLIDMAAA 706
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQ+QSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 707 RTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 753
>gi|359149119|ref|ZP_09182183.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. S4]
Length = 791
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 286/705 (40%), Positives = 423/705 (60%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ + F++ + G L+ + A
Sbjct: 73 ISEDPAYSRLAARLLTRTIAEEAAGQGVTT----------FTESVATGHREGLIADRTAA 122
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + P D +F Y GL+ ++ RY L R IE PQ F +R+A GL+
Sbjct: 123 FVTAHAERLDALVDPAADDRFGYFGLRTVHSRYLLRHPHTRQVIETPQHFMLRVACGLAE 182
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S R + Y L+S+ +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 183 DDSVRALDEVASLYRLMSALSYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELESIYDRYH 242
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFL ++ AVNQGG+RKGA
Sbjct: 243 QVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLNTLDASVAAVNQGGRRKGAA 302
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG++ RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 303 AVYLETWHADIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFSPSDVP 362
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G F+ +Y E Q L + + I A L+ +++ L +TG+ W+TFKDA N
Sbjct: 363 ELTDLWGDAFDAAYRAAEAQ-GLAR----RTIPARELYGRMMRTLAQTGNGWMTFKDASN 417
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +HSSNLCTEI T E VCNLGS+NL + G +D +L + +R
Sbjct: 418 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDGGAIDWERLDEAVR 477
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A+ SN R RPVGLG MG QD +++P+ S EA + + +
Sbjct: 478 TAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLSTRI 537
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY S +LAE+ G ++D + QG+L D + +++
Sbjct: 538 AERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPD------------HYDTDLAWPE 585
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR R+ + GMRN+ +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 586 RWEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 645
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LK+ G+WD L+ G++ + IP++LR +Y TA+E+ +I+ + R
Sbjct: 646 YLVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAART 705
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 706 PFLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKTTYYLRSRPAT 750
>gi|455647608|gb|EMF26550.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
gancidicus BKS 13-15]
Length = 772
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/702 (40%), Positives = 417/702 (59%), Gaps = 38/702 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 60 ISEDPAYSRLAARLLTLAIRAEAASQGVTS----------FTGSVATGHREGLIADRTAA 109
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 110 FVRLHAARLDALIDTGADDRFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVACGLAE 169
Query: 116 NESNR--EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESI 172
++S R E+ A Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L ++E
Sbjct: 170 DDSARALEEVA-ALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPADELDSLYERY 228
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ A LSK+AGG+G +++VR+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 229 HQVARLSKHAGGIGLSFSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGA 288
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV + W+LFSP DV
Sbjct: 289 AAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVADDAPWSLFSPVDV 348
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P+L + +G+EF+ +Y E K + + A L+ +++ L +TG+ W+TFKD
Sbjct: 349 PELVDLWGEEFDAAYRAAE-----AKGLARRTLPARELYGRMMRTLAQTGNGWMTFKDTA 403
Query: 353 NIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
N + Q + ++HSSNLCTEI T E VCNLGS+NL +D +L +
Sbjct: 404 NRTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAFADGDGMDWERLDAAV 463
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
R A+ LD V+DIN+Y ++A SN R RPVGLG+MG QD L M++P+ S EA + + +
Sbjct: 464 RTAVTFLDRVVDINFYPTEEASRSNSRWRPVGLGVMGLQDVLFRMRLPFDSPEARELSTR 523
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E I AY S LAE G +++ + +G+L D + V ++
Sbjct: 524 IAERIMLAAYETSAALAERHGPLPAWEKTRTARGVLHPD------------HYGVELAWP 571
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
W LR RI G+RN+ +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 572 ERWAALRTRIAATGLRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVN 631
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV++LK+ G+WD L+ G++ + IP+D+R++Y TA+EI +I+ + R
Sbjct: 632 SYLVEDLKRLGVWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAAR 691
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS
Sbjct: 692 TPFLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 733
>gi|395205871|ref|ZP_10396502.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium humerusii P08]
gi|422440758|ref|ZP_16517571.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL037PA3]
gi|422472122|ref|ZP_16548610.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL037PA2]
gi|313836279|gb|EFS73993.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL037PA2]
gi|314971219|gb|EFT15317.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL037PA3]
gi|328906507|gb|EGG26282.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium humerusii P08]
Length = 854
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 272/714 (38%), Positives = 430/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK------EIKQIDIPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYFPRTIAKLVADGYLDER 138
Query: 58 LAE-FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L FNL L+ AL P RD + G++ + +RY L + +E+PQ+F+MR+AMGLS+
Sbjct: 139 LERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKALEVPQYFWMRVAMGLSI 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ YN +S+ + + TL N+GT +QLS+C++ DDL I ++I++
Sbjct: 199 TEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDDLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ ++ AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH+D +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQTTSHPWLTWKDSVNTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGK--LDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ GK L+ +L T R
Sbjct: 439 ALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGPRGKRRLNWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S EA + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPEACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S++LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ G+RN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQMFSRATSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLWD S L G+ S+I IP LR +Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLWD-STREELLRRQGDPSEIDAIPASLRHLYRTSFTLDPIAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|289427883|ref|ZP_06429587.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes J165]
gi|354605657|ref|ZP_09023632.1| hypothetical protein HMPREF1003_00199 [Propionibacterium sp.
5_U_42AFAA]
gi|386025042|ref|YP_005943348.1| ribonucleoside-diphosphate reductase subunit alpha
[Propionibacterium acnes 266]
gi|422386031|ref|ZP_16466154.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL096PA3]
gi|422429878|ref|ZP_16506771.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL072PA2]
gi|422447319|ref|ZP_16524053.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL036PA3]
gi|422478876|ref|ZP_16555290.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL063PA1]
gi|422482558|ref|ZP_16558951.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL036PA1]
gi|422486638|ref|ZP_16562982.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL013PA2]
gi|422502984|ref|ZP_16579226.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL027PA2]
gi|422505094|ref|ZP_16581327.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL036PA2]
gi|422508562|ref|ZP_16584726.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL046PA2]
gi|422512471|ref|ZP_16588600.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL087PA2]
gi|422533169|ref|ZP_16609109.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL072PA1]
gi|422535609|ref|ZP_16611526.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL078PA1]
gi|422551770|ref|ZP_16627562.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA3]
gi|422553824|ref|ZP_16629599.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA2]
gi|422567084|ref|ZP_16642711.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL002PA2]
gi|289158766|gb|EFD06966.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes J165]
gi|313808409|gb|EFS46876.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL087PA2]
gi|313818170|gb|EFS55884.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL046PA2]
gi|313821028|gb|EFS58742.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL036PA1]
gi|313823900|gb|EFS61614.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL036PA2]
gi|313827160|gb|EFS64874.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL063PA1]
gi|314927053|gb|EFS90884.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL036PA3]
gi|314961873|gb|EFT05974.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL002PA2]
gi|314979602|gb|EFT23696.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL072PA2]
gi|314988337|gb|EFT32428.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA2]
gi|314990427|gb|EFT34518.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA3]
gi|315082360|gb|EFT54336.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL078PA1]
gi|315083810|gb|EFT55786.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL027PA2]
gi|315089725|gb|EFT61701.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL072PA1]
gi|327326612|gb|EGE68400.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL096PA3]
gi|327449569|gb|EGE96223.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL013PA2]
gi|332676501|gb|AEE73317.1| ribonucleoside-diphosphate reductase subunit alpha
[Propionibacterium acnes 266]
gi|353558313|gb|EHC27677.1| hypothetical protein HMPREF1003_00199 [Propionibacterium sp.
5_U_42AFAA]
gi|456739187|gb|EMF63754.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes FZ1/2/0]
Length = 856
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 269/714 (37%), Positives = 433/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + DL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETQDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|271967541|ref|YP_003341737.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
gi|270510716|gb|ACZ88994.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
Length = 731
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 289/709 (40%), Positives = 426/709 (60%), Gaps = 35/709 (4%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNL 63
DP S++ A LL I E G ++ + + + + G+ + AE +
Sbjct: 33 DPENSRIAAGLLAELIADEAAGHGVRAFSESVA-ATHAAGLVQDGLAAFVAA-HAAELDA 90
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNESNRE 121
+ +A D +F Y GL+ +YDRY L R +E PQ FF+R+A GLS E+ E
Sbjct: 91 LVAQDA-----DDRFEYFGLRTVYDRYLLRHPRTRQVLERPQHFFLRVACGLS--ETVEE 143
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENALLSK 180
A + Y L+S+ +++ S+PTLFNSG+ R QLSSC+L P D+L I+E + A LSK
Sbjct: 144 --AAELYALMSTLSYLPSSPTLFNSGSRRPQLSSCFLLDSPRDELEAIYERYGQVARLSK 201
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
YAGG+G WT+VRS GS I+GTNG S G++P+L+ ++ AVNQGG+RKGA C YLE+W
Sbjct: 202 YAGGIGIAWTRVRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYLESW 261
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H D+EEF+ELR NTG++ RRTH++N+A W+PD FM+RV W+LF P +VP L + +G
Sbjct: 262 HADVEEFLELRDNTGEEARRTHNLNLANWIPDEFMRRVEADGVWSLFDPKEVPHLTDLYG 321
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ-- 358
FEE+Y E + + K+I A L+ +++ L +TG+ W+TFKDA N S Q
Sbjct: 322 AAFEEAYRAAEAEG-----RYVKQIPARSLYGRMMRTLAQTGNGWMTFKDAANRTSNQTA 376
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
+ +IH SNLCTEI T+ E VCNLGSINL H+ +D +L++T+R A+R LD
Sbjct: 377 RPENVIHLSNLCTEILEVTNDAETAVCNLGSINLAAHLDGRDVDWTRLRRTVRTAVRFLD 436
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
ID+ +Y +A +N + RP+GLG+MG D L +++P+ S +A++ + + E I
Sbjct: 437 RTIDLGFYPTPEAGTANRKWRPIGLGVMGLADVLFALRLPFDSPQALELSTRISEEIALA 496
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
AY S++LA E+GR+ SYD + G+L D + S W LR+
Sbjct: 497 AYATSSDLAVERGRHPSYDDTRAAAGVLHPD--------------HYGAARSPEWAALRD 542
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
RI + G+RNS +AIAPTATI++I G IEP N+ + LSGEF ++NRYLV++L+
Sbjct: 543 RIAETGLRNSLMIAIAPTATIASIAGCYECIEPQVSNIFKRETLSGEFLQVNRYLVRDLQ 602
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+GLW + +K DG++ + +P+DL+ +Y TA+E+ +I+ + R +IDQSQ
Sbjct: 603 ARGLWTPQIRDAIKRADGSVQDVPGMPEDLKSLYRTAWELPQKALIDLAAARTPYIDQSQ 662
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI 707
SLN++++ + KL Y AW GLKTTYYLRS A ++ +
Sbjct: 663 SLNLFMATPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIAQTTVAQAV 711
>gi|295131637|ref|YP_003582300.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK137]
gi|417930850|ref|ZP_12574224.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK182]
gi|422386530|ref|ZP_16466647.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL096PA2]
gi|422391809|ref|ZP_16471884.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL099PA1]
gi|422423705|ref|ZP_16500656.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL043PA1]
gi|422462372|ref|ZP_16538995.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL038PA1]
gi|422473736|ref|ZP_16550209.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL056PA1]
gi|422477008|ref|ZP_16553446.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL007PA1]
gi|422484719|ref|ZP_16561094.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL043PA2]
gi|422519145|ref|ZP_16595207.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL074PA1]
gi|422519948|ref|ZP_16595992.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL045PA1]
gi|422526740|ref|ZP_16602734.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL083PA1]
gi|422528161|ref|ZP_16604146.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL053PA1]
gi|422560124|ref|ZP_16635822.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA1]
gi|291377353|gb|ADE01208.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK137]
gi|313771781|gb|EFS37747.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL074PA1]
gi|313810604|gb|EFS48318.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL083PA1]
gi|313831645|gb|EFS69359.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL007PA1]
gi|313834799|gb|EFS72513.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL056PA1]
gi|314974995|gb|EFT19090.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL053PA1]
gi|314977909|gb|EFT22003.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL045PA1]
gi|314984683|gb|EFT28775.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL005PA1]
gi|315095600|gb|EFT67576.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL038PA1]
gi|327332876|gb|EGE74608.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL096PA2]
gi|327447703|gb|EGE94357.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL043PA2]
gi|327448578|gb|EGE95232.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL043PA1]
gi|328762001|gb|EGF75507.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL099PA1]
gi|340769755|gb|EGR92277.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes SK182]
Length = 856
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 269/714 (37%), Positives = 433/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + DL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETQDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|407936484|ref|YP_006852126.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes C1]
gi|407905065|gb|AFU41895.1| ribonucleotide-diphosphate reductase subunit alpha
[Propionibacterium acnes C1]
Length = 856
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/714 (37%), Positives = 433/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + DL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETQDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|422572885|ref|ZP_16648452.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL044PA1]
gi|314928744|gb|EFS92575.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL044PA1]
Length = 854
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 272/714 (38%), Positives = 430/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK------EIKQIDIPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYFPRTIAKLVADGYLDER 138
Query: 58 LAE-FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L FNL L+ AL P RD + G++ + +RY L + +E+PQ+F+MR+AMGLS+
Sbjct: 139 LERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKALEVPQYFWMRVAMGLSI 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ YN +S+ + + TL N+GT +QLS+C++ DDL I ++I++
Sbjct: 199 TEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDDLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ ++ AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH+D +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQTTSHPWLTWKDSVNTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGK--LDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ GK L+ +L T R
Sbjct: 439 ALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGPRGKRRLNWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S EA + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPEACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S++LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ G+RN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLWD S L G+ S+I IP LR +Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLWD-STREELLRRQGDPSEIDAIPASLRHLYRTSFTLDPIAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|421744324|ref|ZP_16182312.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SM8]
gi|406687276|gb|EKC91309.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SM8]
Length = 791
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/705 (40%), Positives = 423/705 (60%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ + F++ + G L+ + A
Sbjct: 73 ISEDPAYSRLAARLLTRTIAEEAAGQGVTT----------FTESVATGHREGLIADRTAA 122
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + P D +F Y GL+ ++ RY L R IE PQ F +R+A GL+
Sbjct: 123 FVTAHAERLDALVDPAADDRFGYFGLRTVHSRYLLRHPHTRQVIETPQHFMLRVACGLAE 182
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S R + Y L+S+ +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 183 DDSARALDEVASLYRLMSALSYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELESIYDRYH 242
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFL ++ AVNQGG+RKGA
Sbjct: 243 QVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLNTLDASVAAVNQGGRRKGAA 302
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG++ RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 303 AVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFSPSDVP 362
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G F+ +Y E + L + + I A L+ +++ L +TG+ W+TFKDA N
Sbjct: 363 ELTDLWGDAFDAAYRAAEAR-GLAR----RTIPARELYGRMMRTLAQTGNGWMTFKDASN 417
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +HSSNLCTEI T E VCNLGS+NL + G +D +L + +R
Sbjct: 418 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDGGAIDWERLDEAVR 477
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A+ SN R RPVGLG MG QD +++P+ S EA + + +
Sbjct: 478 TAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLSTRI 537
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY S +LAE+ G ++D + QG+L D + +++
Sbjct: 538 AERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPD------------HYDTDLAWPE 585
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR R+ + GMRN+ +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 586 RWEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 645
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LK+ G+WD L+ G++ + IP++LR +Y TA+E+ +I+ + R
Sbjct: 646 YLVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAART 705
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 706 PFLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKTTYYLRSRPAT 750
>gi|291454053|ref|ZP_06593443.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
albus J1074]
gi|291357002|gb|EFE83904.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
albus J1074]
Length = 791
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/705 (40%), Positives = 423/705 (60%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ + F++ + G L+ + A
Sbjct: 73 ISEDPAYSRLAARLLTRTIAEEAAGQGVTT----------FTESVATGHREGLIADRTAA 122
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + P D +F Y GL+ ++ RY L R IE PQ F +R+A GL+
Sbjct: 123 FVTAHAERLDALVDPAADDRFGYFGLRTVHSRYLLRHPHTRQVIETPQHFMLRVACGLAE 182
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S R + Y L+S+ +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 183 DDSARALDEVASLYRLMSALSYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELESIYDRYH 242
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFL ++ AVNQGG+RKGA
Sbjct: 243 QVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLNTLDASVAAVNQGGRRKGAA 302
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG++ RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 303 AVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFSPSDVP 362
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G F+ +Y E + L + + I A L+ +++ L +TG+ W+TFKDA N
Sbjct: 363 ELTDLWGDAFDAAYRAAEAR-GLAR----RTIPARELYGRMMRTLAQTGNGWMTFKDASN 417
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +HSSNLCTEI T E VCNLGS+NL + G +D +L + +R
Sbjct: 418 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDGGAIDWERLDEAVR 477
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A+ SN R RPVGLG MG QD +++P+ S EA + + +
Sbjct: 478 TAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLSTRI 537
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY S +LAE+ G ++D + QG+L D + +++
Sbjct: 538 AERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPD------------HYDTDLAWPE 585
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR R+ + GMRN+ +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 586 RWEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 645
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LK+ G+WD L+ G++ + IP++LR +Y TA+E+ +I+ + R
Sbjct: 646 YLVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAART 705
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 706 PFLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKTTYYLRSRPAT 750
>gi|294631327|ref|ZP_06709887.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. e14]
gi|292834660|gb|EFF93009.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. e14]
Length = 798
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/705 (41%), Positives = 422/705 (59%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + + F++ + G L+ + AE
Sbjct: 80 ISEDPAYSRLAARLLTLTIRAEAASQGVTR----------FTESVAVGHREGLIADRTAE 129
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L A+ P D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 130 FVRLHAERLDAAVDPAADDRFGYFGLRTLHSRYLLRHPITRKVIETPQHFMLRVASGLAQ 189
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+ ++ + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 190 DATDHAVDEVTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYH 249
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 250 QVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 309
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV W+LFSP DVP
Sbjct: 310 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFSPSDVP 369
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G EF+ +Y E + L + K + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 370 ELVDLWGAEFDAAYRAAEER-GLAR----KTMPARELYGRMMRTLAQTGNGWMTFKDAAN 424
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +IHSSNLCTEI T E VCNLGS+NL +++G +D +L +T+R
Sbjct: 425 RTANQTAEPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVRDGDIDWERLDETVR 484
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S A + +
Sbjct: 485 TAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAGARALSTRI 544
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE G +++ + +G+L D + V+++
Sbjct: 545 AERIMLAAYEASADLAERHGPLPAWEKTRAARGVLHPD------------HYDVSLTWPE 592
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR RI GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 593 RWTALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 652
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV +LK G+WD L+ +G++ + IP D+R +Y TA+EI +I+ + R
Sbjct: 653 YLVNDLKALGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAART 712
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 713 PFLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 757
>gi|456388969|gb|EMF54409.1| nrdL protein [Streptomyces bottropensis ATCC 25435]
Length = 774
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/761 (39%), Positives = 436/761 (57%), Gaps = 51/761 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F++ I G L+ + AE
Sbjct: 53 ISEDPAYSKLAARLLAIGIRDEAASQGVTT----------FTESIAVGHREGLVADRTAE 102
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + P D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 103 FARVHAERLDALVDPAGDDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVASGLAE 162
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 163 DDTTRAVDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYH 222
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 223 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 282
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+LFSP DVP
Sbjct: 283 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVP 342
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EFE +Y E L + K I+A L+ +++ L +TG+ W+TFKDA N
Sbjct: 343 ELVDLWGEEFEAAYRKAE-ANGLAR----KTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 397
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN--GKLDPIKLKKT 409
+ Q + ++HSSNLCTEI T E VCNLGS+NL + G +D +L +T
Sbjct: 398 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDMDWQRLDET 457
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 458 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 517
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS +LAE G +++ + +G+L D + +
Sbjct: 518 RIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPD------------HFDARPAW 565
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR + GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 566 PERWAALREHVATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 625
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLVK+LK+ G+WD L+ G++ + IP D+R +Y TA+EI +I+ +
Sbjct: 626 NSYLVKDLKELGVWDARTREALRESGGSVEDFAWIPADVRALYRTAWEIPQRGLIDMAAA 685
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN-YAKKSNFEMGID 708
R ++DQSQSLN+++ + KL Y AW GLKTTYYLRS A A+ + +
Sbjct: 686 RTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAQGQARQP 745
Query: 709 SVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
N+ LQ+ + + + + + CE+CQ
Sbjct: 746 ETNIP----------LQQATSAEA--VACSLENPESCEACQ 774
>gi|357401661|ref|YP_004913586.1| Ribonucleoside-diphosphate reductase large subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|386357724|ref|YP_006055970.1| ribonucleoside-diphosphate reductase large subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337768070|emb|CCB76783.1| Ribonucleoside-diphosphate reductase large subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365808232|gb|AEW96448.1| putative ribonucleoside-diphosphate reductase large subunit
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 788
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/703 (41%), Positives = 422/703 (60%), Gaps = 39/703 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS + ARLL I +E G+++ FS I G L+ A
Sbjct: 71 ISEDPQYSFLAARLLARAITEEAAGQQVTS----------FSSSIATGHREGLIADATAA 120
Query: 61 FNLSLLS--NALL-PERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + +AL+ P D +F Y GL+ LY RY L R +E PQ F +R+A GL+
Sbjct: 121 FTAAHAGRLDALIDPAGDDRFGYFGLRTLYSRYLLRHPVTRQVVETPQHFLLRVACGLAA 180
Query: 116 NESNR--EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESI 172
++S E+ A Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 181 DDSAAAVEEVA-SLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYQRY 239
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ A LSK+AGG+G ++++RS GS I+GTNGRS G++PFL+ ++ AVNQGG+RKGA
Sbjct: 240 HQVARLSKHAGGIGLPFSRIRSRGSLIRGTNGRSNGIVPFLRTLDASVAAVNQGGRRKGA 299
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
C YLETWH D+EEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DV
Sbjct: 300 ACVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAEWSLFSPADV 359
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P+L + +G+EF+ +Y E + K++ A L+ +++ L +TG+ W+TFKDA
Sbjct: 360 PELVDLWGEEFDAAYRAAEAAG-----RQIKRVPARQLYARMMRTLAQTGNGWMTFKDAA 414
Query: 353 NIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
N + Q + ++HSSNLCTEI T E VCNLGS+NL H+ + +D KL T
Sbjct: 415 NRTANQTAEPGSVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLTADASVDWEKLDAT 474
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DINYY ++A SN R RPVGLG+MG QD +++P+ S EA +
Sbjct: 475 VRTAVTFLDRVVDINYYPTEQAAASNSRWRPVGLGVMGLQDVFFRLRLPFDSPEARALST 534
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E + AY S LAE G + +++ + +G+L D + +
Sbjct: 535 RIAERVMLAAYEQSCALAERHGPHPAWERTRAARGVLHPD------------HFPTEPAW 582
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR RI + G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 583 PDRWTALRERISRTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 642
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV +LKK G+WD L+ +G++ + IP +R +Y TA+E+ +I+ +
Sbjct: 643 NTYLVADLKKLGVWDARTREALREANGSVQDLGWIPAGVRALYRTAWELPQRALIDMAAD 702
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
R ++DQSQSLN++++ + KL Y AW +GLKTTYYLRS
Sbjct: 703 RTPYLDQSQSLNLFMAAPTIGKLSSMYAYAWKKGLKTTYYLRS 745
>gi|443624322|ref|ZP_21108796.1| putative Ribonucleoside-diphosphate reductase [Streptomyces
viridochromogenes Tue57]
gi|443342236|gb|ELS56404.1| putative Ribonucleoside-diphosphate reductase [Streptomyces
viridochromogenes Tue57]
Length = 776
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 293/707 (41%), Positives = 420/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E + + F++ + G L+ + AE
Sbjct: 58 ISEDPAYSRLAARLLTISIAAEAASQGVTS----------FTESVAVGHREGLIADRTAE 107
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 108 FVRVHAARLDALIDTGADDRFGYFGLRTLHSRYLLRHPLTRKVIETPQHFMLRVAAGLAE 167
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 168 DDTARSVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYH 227
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 228 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 287
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV W+LFSP DVP
Sbjct: 288 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFSPADVP 347
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E + L + K I A L+ +++ L +TG+ W+TFKDA N
Sbjct: 348 ELVDLWGEEFDAAYRKAE-EAGLAR----KTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 402
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK--LDPIKLKKT 409
+ Q + ++HSSNLCTEI T E VCNLGS+NL + + +D +L T
Sbjct: 403 RTANQTALPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPARQDIDWERLDAT 462
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN + RPVGLG MG QD +++P+ S EA + +
Sbjct: 463 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKRLST 522
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY AS +LAE G +++ + +G+L D + V ++
Sbjct: 523 RIAERIMLAAYEASADLAERGGPLPAWEKTRTARGVLHPD------------HYDVELTW 570
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR+RI GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 571 PERWAALRSRIATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 630
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV ELK G+WD L+ +G++ + IP D+R +Y TA+EI +I+ +
Sbjct: 631 NSYLVDELKALGVWDARTREALRESNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAA 690
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 691 RTPFLDQSQSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 737
>gi|29829568|ref|NP_824202.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
avermitilis MA-4680]
gi|29606676|dbj|BAC70737.1| putative ribonucleoside-diphosphate reductase alpha chain
[Streptomyces avermitilis MA-4680]
Length = 793
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/705 (41%), Positives = 416/705 (59%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E + + FS I G L+ + A+
Sbjct: 75 ISEDPAYSRLAARLLTISIAEEAASQGVTS----------FSASITVGHREGLVADRTAD 124
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 125 FVRLHTARLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRRVIETPQHFMLRVASGLAE 184
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++++ + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 185 DDTSHAVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYH 244
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 245 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 304
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 305 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNENGVWSLFSPADVP 364
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G EF+ +Y E + L K K I A L+ +++ L +TG+ W+TFKDA N
Sbjct: 365 ELVDLWGDEFDAAYRKAE-EAGLAK----KTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 419
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + ++HSSNLCTEI T E VCNLGS+NL + +D +L T+R
Sbjct: 420 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGRDIDWERLDATVR 479
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA + +
Sbjct: 480 TAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEAQALSTRI 539
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE G +++ + +G+L D + V ++
Sbjct: 540 AERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPD------------HFDVELTWPE 587
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR RI GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 588 RWAALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 647
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV ELK+ G+WD L+ G++ + +P D+R +Y TA+EI +I+ + R
Sbjct: 648 YLVDELKQLGVWDAQTREALRESGGSVQGFTWVPQDVRDLYRTAWEIPQRGLIDMAAART 707
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQ+QSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 708 PFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 752
>gi|86261680|emb|CAC17629.2| class I ribonucleotide-diphosphate reductase large subunit chain
[Streptomyces jumonjinensis]
Length = 811
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/760 (39%), Positives = 429/760 (56%), Gaps = 52/760 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E G+ FS + G L+ + A
Sbjct: 93 ISEDPAYSRLAARLLTRTIADEAEGQGAVS----------FSASVAVGFAEGLIADRTAA 142
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + P D +F Y GL+ LY RY L R IE PQ F +R+A GL+
Sbjct: 143 FVTLHAARLDALIDPAADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAE 202
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 203 DDSTRALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYH 262
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G +++VR+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 263 QVARLSKHAGGIGLSYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 322
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 323 AVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFSPSDVP 382
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G +F+ +Y E L + K + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 383 ELVDLWGDDFDTAYRRAE-AAGLAR----KTMPARELYGRMMRTLAQTGNGWMTFKDASN 437
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +HSSNLCTEI T E VCNLGS+NL + +D +L T+R
Sbjct: 438 RTANQTALPGRTVHSSNLCTEILEVTDDAETAVCNLGSVNLAAFVTQDDIDWERLDATVR 497
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +K+P+ S A + +
Sbjct: 498 TAVTFLDRVVDINFYPTEQAGRSNNRWRPVGLGAMGLQDVFFQLKLPFDSPAARTLSTRI 557
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE G +++ + G+L D +
Sbjct: 558 AERIMLAAYEASADLAERHGPLPAWNETRTAHGVLHPD------------HYNTTPHWPD 605
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR RI G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 606 RWNALRERIAATGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNT 665
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV+ELK G+WD + L+ +G++ +++P D+R++Y TA+EI +I+ + R
Sbjct: 666 YLVQELKNLGVWDATTREALRDANGSIQNFTQVPADVRELYRTAWEIPQRGLIDMAAART 725
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKK--SNFEMGIDS 709
++DQSQSLN+++ + KL Y AW +G+KTTYYLRS A + SN G
Sbjct: 726 PYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGIKTTYYLRSRPATRIARAASNTNAGA-- 783
Query: 710 VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ + + + + + + CE+CQ
Sbjct: 784 ----TVPVPA--------QTTPEDAVACSLENPESCEACQ 811
>gi|422489894|ref|ZP_16566220.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL020PA1]
gi|328757394|gb|EGF71010.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL020PA1]
Length = 856
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/714 (37%), Positives = 433/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + DL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETQDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S++L H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVDLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|386845601|ref|YP_006263614.1| ribonucleoside-diphosphate reductase subunit alpha [Actinoplanes
sp. SE50/110]
gi|359833105|gb|AEV81546.1| ribonucleoside-diphosphate reductase alpha chain [Actinoplanes sp.
SE50/110]
Length = 822
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 417/702 (59%), Gaps = 41/702 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL+ +++EV +E + FS+ I G L+ F
Sbjct: 85 EEPQYSRLAARLLIDLVEQEV--RE--------QGATTFSESIELGFAQGLIGDDAHAFV 134
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLNE 117
+ + L A+ DL+F Y GL+ + DRY L I+ + +E PQ+F MR+A GLS
Sbjct: 135 VAHRAELDAAVDVANDLRFEYFGLRTVADRYLLRHPIKRVPVETPQYFLMRVACGLSQTA 194
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
AI FY L++S ++ S+PTLFNSGT +Q+SSC+L P D+L I+E + A
Sbjct: 195 QE----AIGFYRLMASLAYLPSSPTLFNSGTRHTQMSSCFLVDSPKDELDSIYERYHQVA 250
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G W++VR G+ I+GTNG+S G++PFLK ++ AVNQGG+RKGA C Y
Sbjct: 251 KLSKFSGGIGIAWSRVRGRGALIRGTNGKSNGIVPFLKTLDAGVAAVNQGGRRKGAACVY 310
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+EEF+ELR NTG++ RRTH++N+A W+PD FM+RV W+L P D P+L
Sbjct: 311 LEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADEDWSLIDPSDAPELP 370
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG F E+Y ++ + K KKI A L+ +++ L +TG+ W+TFKD N S
Sbjct: 371 DLFGDAFTEAY-------RIAEKKAVKKIKARELYGRMMRTLAQTGNGWMTFKDRSNALS 423
Query: 357 PQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q IH SNLCTEI S +E VCNLGSINL H +D +L+ T+R A+
Sbjct: 424 NQTGAPGNTIHLSNLCTEILEVNSDDETAVCNLGSINLGAHTTADGVDWERLRATVRTAV 483
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD VIDINYY ++A SN R RPVGLG+MG QD +++P+ S A + + + E
Sbjct: 484 VFLDRVIDINYYPSQQAAVSNPRWRPVGLGLMGLQDAFFTLRLPFDSPAAKELSTRVQEE 543
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + AS LAE+ G + +Y + QG L + M++ W
Sbjct: 544 IFLTSLEASAGLAEQFGAHPAYAETRAAQGDL------------HPELWGAPMTQGARWA 591
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
++ RI G+RNS VAIAPTATI++I G IEP NL + +SGEF +IN YLV
Sbjct: 592 AVKERIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINNYLV 651
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK +GLW + +K +G++ I+ +P D+++I+ TA+E+ +I+ + R +I
Sbjct: 652 RELKSRGLWTPEIREAIKRAEGSVQDIAALPADVKEIFRTAWELPQRALIDLAAARAPFI 711
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
DQSQSLN++++ + KL Y AW GLKT+YYLRS A
Sbjct: 712 DQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTSYYLRSRPAT 753
>gi|422496769|ref|ZP_16573049.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL002PA3]
gi|315087307|gb|EFT59283.1| ribonucleoside-diphosphate reductase, alpha subunit
[Propionibacterium acnes HL002PA3]
Length = 856
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/714 (37%), Positives = 432/714 (60%), Gaps = 15/714 (2%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGK---EIKQID---IPIKYKEYFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG ++ +D + ++ YF + I K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFPRTIAKLVADGHLDER 138
Query: 58 LA-EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L +F+L L+ AL P RD ++G++ + +RY L + +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT +QLS+C++ D+L I ++I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMRTEDNLEHIAQTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ + AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WHMD +F++LR+N+GD RR + A+W+ D FMKRV K W LF P + DL
Sbjct: 319 YLENWHMDFPQFLDLRQNSGDPYRRPRTADTAVWISDEFMKRVAKDEDWYLFDPAETQDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G +F + Y Y Q + GKIK F++ +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQTTSHPWLTWKDSINTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ +LD +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPRGKRRLDWDQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN +R +GLG+MG D L +++PY S +A + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIRVPYDSPDACEIVDRV 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y ++GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 VEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR +++ GMRN+ +AIAPTA+I I G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMFSRTTSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E++ L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAV 789
>gi|429196117|ref|ZP_19188103.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
ipomoeae 91-03]
gi|428668195|gb|EKX67232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
ipomoeae 91-03]
Length = 806
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/713 (41%), Positives = 416/713 (58%), Gaps = 44/713 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F++ I G L+ + AE
Sbjct: 81 ISEDPAYSKLAARLLAIGIRAEAASQGVTT----------FTESIAVGHREGLVADRTAE 130
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + P D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 131 FVRVHAERLDALVDPAADDRFGYFGLRTLHSRYLLRHPITRKVIETPQHFMLRVASGLAE 190
Query: 116 NESNREKCAIK-------FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYG 167
+ + + + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L
Sbjct: 191 DTALDARTGTRSVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDS 250
Query: 168 IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG 227
I++ + A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG
Sbjct: 251 IYDRYHQVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGG 310
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLF 287
+RKGA YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+LF
Sbjct: 311 RRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADERWSLF 370
Query: 288 SPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWIT 347
SP DVP+L + +G+EF+ +Y E L K K I A L+ +++ L +TG+ W+T
Sbjct: 371 SPADVPELVDLWGEEFDAAYRKAEAD-GLAK----KTIPARDLYGRMMRTLAQTGNGWMT 425
Query: 348 FKDACNIRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDP 403
FKDA N + Q ++HSSNLCTEI T E VCNLGS+NL + G LD
Sbjct: 426 FKDAANRTANQTAEAGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQATGDLDW 485
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L +T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S E
Sbjct: 486 ERLDETVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPE 545
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A + + E I AY ST+LAE G +++ + +G+L D +
Sbjct: 546 AKALSTRIAERIMLAAYETSTDLAERDGPLPAWEKTRTARGVLHPD------------HY 593
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
V + W LR RI GMRNS +AIAPTATI++I GV IEP NL + LS
Sbjct: 594 GVEFTWPERWAALRERIATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLS 653
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
GEF ++N YLV++LK G+WD L+ +G++ + IP D+R +Y TA+EI +
Sbjct: 654 GEFLQVNSYLVQDLKALGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGL 713
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
I+ + R ++DQSQSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 714 IDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 766
>gi|350568233|ref|ZP_08936637.1| ribonucleotide-diphosphate reductase alpha subunit
[Propionibacterium avidum ATCC 25577]
gi|348661875|gb|EGY78552.1| ribonucleotide-diphosphate reductase alpha subunit
[Propionibacterium avidum ATCC 25577]
Length = 854
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 281/781 (35%), Positives = 447/781 (57%), Gaps = 40/781 (5%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQID--IPIKYKE----YFSKFINKGIDNKLLNPK 57
DP + + +R+ + + KEVFG + P + ++ YF + I+K + + L+ +
Sbjct: 79 DPAFDTIASRIAVKKLYKEVFGDTHDGLGDASPERVRDLHHAYFPRTIDKLVADGHLDER 138
Query: 58 LAE-FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSL 115
L F+L L+ AL P RD + G++ + +RY L R +E+PQ+F+MR+AMGLSL
Sbjct: 139 LGRLFDLDALATALDPARDDLIGFTGVRTMVNRYLLRTPDQRALEVPQYFWMRVAMGLSL 198
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E + A+ Y+ +S+ + + TL N+GT QLS+C++ DDL I +I++
Sbjct: 199 TEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPAGQLSNCFVMRTEDDLEHIARTIRDV 258
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
++K GG+G + +R GSPI+ N S G IPF+ ++ AV++GGK+ GA+C
Sbjct: 259 MWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFMHTIDSTLRAVSRGGKKLGALCF 318
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
Y+E WHMD +F++LR+N+GD RRT + A+W+ D FMKRV K W LF P + PDL
Sbjct: 319 YMENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAKDEDWYLFDPAETPDL 378
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
G F + Y Y + + G I+ F + +A +R IL L T HPW+T+KD+ N R
Sbjct: 379 TELTGSAFSKRYAHYIAEAEAGHIRRFHRTTAREQFRAILVSLQTTSHPWLTWKDSVNTR 438
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGK--LDPIKLKKTIR 411
+ + G IHSSNLCTEI L ++ VCNL S+NL H+ GK +D +L T R
Sbjct: 439 ALNSNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAGHLVGPRGKRRIDWNQLAATTR 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+A+R LDN++DI AV +A+ SN+ +R +GLG+MG D L ++IPY S EA + D+
Sbjct: 499 LAVRHLDNLVDITASAVPQAERSNVENRAIGLGVMGLTDMLEQVRIPYDSSEACEIVDRI 558
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
+E I ++A S +LA E+G Y + GS W +G++P D+L +LE++RG + V+ + +
Sbjct: 559 IEFISWHAIDTSADLATERGSYPMFAGSGWSEGMVPVDTLAVLERDRGIP-VDVDRTTRM 617
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR ++ + GMRN+ +AIAPTA+I + G + ++P + + ++ +G+F E+NR
Sbjct: 618 DWDGLRTKVSR-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQMFSRATSAGKFLEVNR 676
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV +LK GLW E + L G+ S+I IP LR++Y T+F + P + + Q
Sbjct: 677 NLVADLKDLGLW-EKVREELLRRQGDPSEIEAIPASLRRLYRTSFTLDPMAYLNVAARAQ 735
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM------ 705
KW+DQ+ S NIY++++S +++ Y AW G+KTTYYL + + A++S +
Sbjct: 736 KWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHTAEQSTVAVNKAAGH 795
Query: 706 ------GIDSVNLDEISIKGYNKNLQEI-----------KNNKKCLINSEINDVNECESC 748
G + + S K L E+ + C ++ + + +CESC
Sbjct: 796 RNGPRRGFATAARRDTSTATIEKPLTEVLDAEPVMALDLGDGTSCPVDPQ--ERLQCESC 853
Query: 749 Q 749
Q
Sbjct: 854 Q 854
>gi|441155686|ref|ZP_20966845.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
rimosus subsp. rimosus ATCC 10970]
gi|440617881|gb|ELQ80968.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
rimosus subsp. rimosus ATCC 10970]
Length = 817
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/765 (39%), Positives = 436/765 (56%), Gaps = 56/765 (7%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNL 63
+P YS++ ARLL I +E + FS + G L+ AEF
Sbjct: 90 EPQYSKLAARLLTRAIAEEAA----------AEGATAFSASVATGHREGLIADDTAEFVR 139
Query: 64 -------SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLS 114
+L+ AL D +F Y GL+ L+ RY L I IE PQ F +R+A GL+
Sbjct: 140 THAARLDALVDRALADGADDRFGYFGLRTLHSRYLLRHPISRQVIETPQHFLLRVACGLA 199
Query: 115 LNESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESI 172
+ S R + + Y L S+ +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 200 EDHSERAVDDVAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRY 259
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ A LSK+AGG+G +++VR+ GS I+GTNG S G++PFL+ ++ AVNQGG+RKGA
Sbjct: 260 HQVARLSKHAGGIGLSYSRVRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGA 319
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
C YLETWH D+EEF+ELR NTG+D RRTH++NIA W+PD FM+RV + W+LFSP DV
Sbjct: 320 ACVYLETWHADLEEFLELRDNTGEDARRTHNLNIAHWIPDEFMRRVEADADWSLFSPSDV 379
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P+L + +G EF+ +Y + + + + K++ A L+ +++ L +TG+ W+TFKDA
Sbjct: 380 PELVDLYGDEFDTAY----RKAEAAGLAV-KQVPARILYARMMRTLAQTGNGWMTFKDAA 434
Query: 353 NIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN------GKLDPI 404
N + Q + ++HSSNLCTEI T E VCNLGS+NL H+ N +D
Sbjct: 435 NRTANQTAEPGKVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLGNEANGWEEAMDWE 494
Query: 405 KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEA 464
+L T+R A+ LD V+DIN+Y ++A SN R RPVGLG+MG QD +++ + S EA
Sbjct: 495 RLDATVRTAVTFLDRVVDINFYPTEQAGASNSRWRPVGLGLMGLQDVFFRLRLGFDSPEA 554
Query: 465 IKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLK 524
+ + + E I AY AS +LAE G + ++ + +G+L D Y
Sbjct: 555 RELSTRISERIMLAAYEASADLAERHGPHPAWSATRTARGVLHPD-----------HYPN 603
Query: 525 VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG 584
+ W LR RI GMRNS +AIAPTATI++I GV IEP NL + LSG
Sbjct: 604 AEPRWADRWAALRTRIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSG 663
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EF ++N YL++ELK GLWDE L+ +G++ ++ IP ++R++Y TA+EI +I
Sbjct: 664 EFLQVNAYLIEELKALGLWDERTRDALREGNGSVQELDWIPAEIRELYRTAWEIPQRALI 723
Query: 645 EAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
+ + R ++DQSQSLN+++++ + KL Y AW RG+KTTYYLRS A +S
Sbjct: 724 DMAADRTPYLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARG 783
Query: 705 MGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G G + + + + CE+CQ
Sbjct: 784 TG-----------GGAQPAPVPTQAADPEAVACSLENPESCEACQ 817
>gi|313144212|ref|ZP_07806405.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cinaedi CCUG 18818]
gi|313129243|gb|EFR46860.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cinaedi CCUG 18818]
Length = 792
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/766 (40%), Positives = 438/766 (57%), Gaps = 109/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL +Y + +V G YK+ FI + +LL +++L+
Sbjct: 75 PNWSFVAARLFLYDLYHKVTGW--------TGYKKLEDYFIQGENEGRLLRGIKEKYDLA 126
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + + PERDLQFNYLG+K LYDRY L + IE+PQ FM IAM L+ NE++
Sbjct: 127 FLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNQPIELPQHMFMAIAMFLAQNENDCNAW 186
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A+KFY+++S F +C+TPTL N+ T R QLSSC++ + PD++ GIF++ KE ALLSKY G
Sbjct: 187 AVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTPDNIEGIFDAYKEMALLSKYGG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR LGS I G + GV+PFLK+ NDVA+AV+Q G RKGAI YLE WH D
Sbjct: 247 GIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIAVDQLGTRKGAIATYLEVWHND 306
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+G++RRR HD+ A+W+ DLFMKRV WTLF PY P+L +G+EF
Sbjct: 307 VFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANEFWTLFDPYQCPELTELYGEEF 366
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y+ YE + L ++ A LW+KIL+ FE+G P++ FKD N +P H GI
Sbjct: 367 EAKYLEYEQNEHI----LKHRVVAKDLWKKILTNYFESGLPFLCFKDNANRANPNGHAGI 422
Query: 364 IHSSNLCTEITLNTSKN--------------------EIGVCN---------------LG 388
I SSNLCTEI NT+ N E+ + N LG
Sbjct: 423 IRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEVELDNGVRKAANKITSVDSLLG 482
Query: 389 -SINLTLHMKNG-----------KLDPIKLKKTIR----IAMRMLDNVIDINYYAVKKAK 432
+ +T + G L I K+ I IA+RMLDNVID+N+Y +K K
Sbjct: 483 KKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLPIAIRMLDNVIDLNFYPNRKVK 542
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N ++R +GLG+MG + L KI + S E + D+ ME+I +YA +S++LA+EKG+
Sbjct: 543 VTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEVMELISFYAISSSSDLAQEKGK 602
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y +DGS W +GI+P D +LKL+ +RG + S+ +W+ LR ++K G+RN
Sbjct: 603 YPQFDGSNWSKGIMPIDLASKEALKLV--DRGGLF-----SQQCDWESLRKKVKTQGIRN 655
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP YR ++ NLSG +
Sbjct: 656 GYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVV------------------ 697
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI--S 665
+ + D Y +A++I +I+A +VRQKWIDQ QS N+++
Sbjct: 698 -------------VPHLSADTWNYYISAYDIDQTLLIKAAAVRQKWIDQGQSTNVFVRLD 744
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
SGK L++ Y LAW GLK+TYYLRS S K + ++ VN
Sbjct: 745 KASGKMLNDIYMLAWRLGLKSTYYLRSQSPEIEKDDMIDRSVECVN 790
>gi|396078944|dbj|BAM32320.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cinaedi ATCC BAA-847]
Length = 792
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/766 (40%), Positives = 438/766 (57%), Gaps = 109/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL +Y + +V G YK+ FI + +LL +++L+
Sbjct: 75 PNWSFVAARLFLYDLYHKVTGW--------TGYKKLEDYFIQGENEGRLLRGIKEKYDLA 126
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + + PERDLQFNYLG+K LYDRY L + IE+PQ FM IAM L+ NE++
Sbjct: 127 FLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNKQPIELPQHMFMAIAMFLAQNENDCNAW 186
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A+KFY+++S F +C+TPTL N+ T R QLSSC++ + PD++ GIF++ KE ALLSKY G
Sbjct: 187 AVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTPDNIEGIFDAYKEMALLSKYGG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR LGS I G + GV+PFLK+ NDVA+AV+Q G RKGAI YLE WH D
Sbjct: 247 GIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIAVDQLGTRKGAIATYLEVWHND 306
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+G++RRR HD+ A+W+ DLFMKRV WTLF PY P+L +G+EF
Sbjct: 307 VFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANEFWTLFDPYQCPELTELYGEEF 366
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y+ YE + L ++ A LW+KIL+ FE+G P++ FKD N +P H GI
Sbjct: 367 EAKYLEYEQNEHI----LKHRVVAKDLWKKILTNYFESGLPFLCFKDNANRANPNGHAGI 422
Query: 364 IHSSNLCTEITLNTSKN--------------------EIGVCN---------------LG 388
I SSNLCTEI NT+ N E+ + N LG
Sbjct: 423 IRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEVELDNGVRKAANKITSVDSLLG 482
Query: 389 -SINLTLHMKNG-----------KLDPIKLKKTIR----IAMRMLDNVIDINYYAVKKAK 432
+ +T + G L I K+ I IA+RMLDNVID+N+Y +K K
Sbjct: 483 KKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLPIAIRMLDNVIDLNFYPNRKVK 542
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N ++R +GLG+MG + L KI + S E + D+ ME+I +YA +S++LA+EKG+
Sbjct: 543 VTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEVMELISFYAISSSSDLAQEKGK 602
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y +DGS W +GI+P D +LKL+ +RG + S+ +W+ LR ++K G+RN
Sbjct: 603 YPQFDGSNWSKGIMPIDLASKEALKLV--DRGGLF-----SQQCDWESLRKKVKTQGIRN 655
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP YR ++ NLSG +
Sbjct: 656 GYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVV------------------ 697
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI--S 665
+ + D Y +A++I +I+A +VRQKWIDQ QS N+++
Sbjct: 698 -------------VPHLSADTWNYYISAYDIDQTLLIKAAAVRQKWIDQGQSTNVFVRLD 744
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
SGK L++ Y LAW GLK+TYYLRS S K + ++ VN
Sbjct: 745 KASGKMLNDIYMLAWRLGLKSTYYLRSQSPEIEKDDMIDRSVECVN 790
>gi|402783569|ref|YP_006638900.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cinaedi PAGU611]
gi|386780153|dbj|BAM15011.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cinaedi PAGU611]
Length = 792
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/766 (40%), Positives = 438/766 (57%), Gaps = 109/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL +Y + +V G YK+ FI + +LL +++L+
Sbjct: 75 PNWSFVAARLFLYDLYHKVTGW--------TGYKKLEDYFIQGENEGRLLRGIKEKYDLA 126
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + + PERDLQFNYLG+K LYDRY L + IE+PQ FM IAM L+ NE++
Sbjct: 127 FLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNQPIELPQHMFMAIAMFLAQNENDCNAW 186
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A+KFY+++S F +C+TPTL N+ T R QLSSC++ + PD++ GIF++ KE ALLSKY G
Sbjct: 187 AVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTPDNIEGIFDAYKEMALLSKYGG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR LGS I G + GV+PFLK+ NDVA+AV+Q G RKGAI YLE WH D
Sbjct: 247 GIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIAVDQLGTRKGAIATYLEVWHND 306
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+G++RRR HD+ A+W+ DLFMKRV WTLF PY P+L +G+EF
Sbjct: 307 VFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANEFWTLFDPYQCPELTELYGEEF 366
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y+ YE + L ++ A LW+KIL+ FE+G P++ FKD N +P H GI
Sbjct: 367 EAKYLEYEQNEHI----LKHRVVAKDLWKKILTNYFESGLPFLCFKDNANRANPNGHAGI 422
Query: 364 IHSSNLCTEITLNTSKN--------------------EIGVCN---------------LG 388
I SSNLCTEI NT+ N E+ + N LG
Sbjct: 423 IRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEVELDNGVRKAANKITSVDSLLG 482
Query: 389 -SINLTLHMKNG-----------KLDPIKLKKTIR----IAMRMLDNVIDINYYAVKKAK 432
+ +T + G L I K+ I IA+RMLDNVID+N+Y +K K
Sbjct: 483 KKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLPIAIRMLDNVIDLNFYPNRKVK 542
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N ++R +GLG+MG + L KI + S E + D+ ME+I +YA +S++LA+EKG+
Sbjct: 543 VTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEVMELISFYAISSSSDLAQEKGK 602
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y +DGS W +GI+P D +LKL+ +RG + S+ +W+ LR ++K G+RN
Sbjct: 603 YPQFDGSNWSKGIMPIDLASKEALKLV--DRGGLF-----SQQCDWESLRKKVKTQGIRN 655
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP YR ++ NLSG +
Sbjct: 656 GYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVV------------------ 697
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI--S 665
+ + D Y +A++I +I+A +VRQKWIDQ QS N+++
Sbjct: 698 -------------VPHLSTDTWNYYISAYDIDQTLLIKAAAVRQKWIDQGQSTNVFVRLD 744
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
SGK L++ Y LAW GLK+TYYLRS S K + ++ VN
Sbjct: 745 KASGKMLNDIYMLAWRLGLKSTYYLRSQSPEIEKDDVIDRSVECVN 790
>gi|315506489|ref|YP_004085376.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora
sp. L5]
gi|315413108|gb|ADU11225.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
sp. L5]
Length = 798
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/755 (38%), Positives = 429/755 (56%), Gaps = 53/755 (7%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL + KEV G+ + I Y L+ + A F
Sbjct: 89 EEPQYSKLAARLLAAYVDKEVRGQGVASFSQSIAYAHGLG----------LIGDETAAFV 138
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
+ L +A+ P+ DL+F Y GL+ + DRY L R +E PQ++ +R+A GLS
Sbjct: 139 ARHARKLDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLVVETPQYWLLRVACGLSRTP 198
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
A+ FY L+SS ++ S+PTLFNSGT +Q+SSC+L P D+L I+E + A
Sbjct: 199 GE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYERYHQVA 254
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G W++VR G+ I+GTNGRS G++PFLK ++ AVNQGG+RKGA C Y
Sbjct: 255 KLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVY 314
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+EEF+ELR NTG++ RRTH++N+A WVPD FM+RV W+L P D P+L
Sbjct: 315 LEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRRVEADGEWSLVDPSDAPELP 374
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ F+ +Y E + + A L+ +++ L +TG+ W+TFKDA N S
Sbjct: 375 DLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGNGWMTFKDAANRLS 427
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI E VCNLGS+NL H+ +D +L+ T+R A+
Sbjct: 428 NQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGVDWERLRATVRTAV 487
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD VIDINYY ++A SN R RPVGLG+MG QD +++P+ S +A + + + E
Sbjct: 488 VFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAQAKELSTRVQEE 547
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I A S LAE G + +Y + +G L D +++ W
Sbjct: 548 ILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPD------------LWGAEPAQAGRWA 595
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI G+RNS VAIAPTATI++I G +EP NL + +SGEF ++N YLV
Sbjct: 596 ALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSGEFLQVNTYLV 655
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK +GLW + +K +G++ I+ +P +R+++ TA+E+ +I+ + R ++
Sbjct: 656 RELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALIDLAAARAPFV 715
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN+++S + KL Y AW GLKTTYYLRS A +++ + V+
Sbjct: 716 DQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVAPVLAPVS--- 772
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G + + + L N E CE+CQ
Sbjct: 773 ----GVVSAVSDDEALACSLENPE-----SCEACQ 798
>gi|7328344|emb|CAB82485.1| class I ribonucleotide-diphosphate reductase large subunit chain
[Streptomyces coelicolor A3(2)]
Length = 791
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 284/703 (40%), Positives = 419/703 (59%), Gaps = 38/703 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DPVYS++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 75 ISEDPVYSRLAARLLTIGIRAEAASQGVVT----------FTDSVATGHREGLIADRTAA 124
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + + D +F Y GL+ LY RY L R +E PQ F +R+A GL+
Sbjct: 125 FVRLHADRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAE 184
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT +Q+SSCYL P D+L +++ +
Sbjct: 185 DDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLH 244
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G +++VR+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 245 QVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 304
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG+D RRTH++N+A W+PD FM+RV TW+LFSP DVP
Sbjct: 305 AVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVP 364
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E + L + + + A L+ +++ L +TG+ W+TFKD N
Sbjct: 365 ELTDLWGEEFDAAYRRAE-EAGLAR----RTLPARELYGRMMRTLAQTGNGWMTFKDTAN 419
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPIKLKKT 409
+ Q ++HSSNLCTEI T E VCNLGS+NL + +G +D +L T
Sbjct: 420 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDAT 479
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 480 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 539
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY S +LAE G +++ + +G+L D + V +
Sbjct: 540 RIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPD------------HYGVEPAW 587
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR R+ G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 588 PERWAALRARMATTGLRNSMLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 647
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV +LK+ G+WD L+ +G++ + IP+D+R +Y TA+EI +I+ +
Sbjct: 648 NSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAA 707
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
R ++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS
Sbjct: 708 RTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 750
>gi|32267273|ref|NP_861305.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
hepaticus ATCC 51449]
gi|32263326|gb|AAP78371.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
51449]
Length = 791
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 316/771 (40%), Positives = 445/771 (57%), Gaps = 120/771 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL +Y + +V G + K +EYF + +G KL++ +++L+
Sbjct: 75 PNWSFVAARLFLYDLYHKVTGWTGYK-----KLEEYFEQGEREG---KLISGIKEKYDLA 126
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + + PERDLQFNYLG+K LYDRY L R IE+PQ FM IAM L+ NE +
Sbjct: 127 FLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNRPIELPQHMFMAIAMFLAQNEKDCNAW 186
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A+KFYN++S F +C+TPTL N+ T R QLSSC++ + PD++ GIF++ KE ALLSKY G
Sbjct: 187 AVKFYNMISLFEVICATPTLANARTTRHQLSSCFVGSTPDNIEGIFDAYKEMALLSKYGG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D+++VR LGS I G + GV+PFLK+ NDVA+AV+Q G RKGAI YLE WH D
Sbjct: 247 GIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKIANDVAIAVDQLGTRKGAIATYLEIWHND 306
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRRTHD+ AIW+ DLFMKRV WTLF PY+ P+L +G+ F
Sbjct: 307 IHDFIDLRKNSGEERRRTHDLFPAIWICDLFMKRVESNEFWTLFDPYECPELTELYGEAF 366
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E YI YE K+ K ++ K LW+KIL+ FE+G P++ FKD N +P H GI
Sbjct: 367 EAKYIEYEQSDKVLKSRILAK----DLWKKILTNYFESGLPFLCFKDNANRVNPNAHAGI 422
Query: 364 IHSSNLCTEITLNTSKNEI------------------------GVC-------------- 385
I SSNLCTEI NT+ N G+C
Sbjct: 423 IRSSNLCTEIFQNTNPNHYVVEVEFEDGSKVVYEEKEEVKLDNGMCKRANKITSVDSING 482
Query: 386 ------------------NLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYA 427
NL S+NL+ N K D +++ + IA+RMLDNVID+N+Y
Sbjct: 483 RKVFITSRIAQGGATAVCNLASVNLS--KINTKED---IERVLPIAIRMLDNVIDLNFYP 537
Query: 428 VKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELA 487
+K K +N+++R +GLG+MG + L I + S+E + D+ ME++ +YA +S LA
Sbjct: 538 NRKVKVTNMQNRAIGLGVMGEAEMLARSHIDWGSEEHLIKIDEIMELVSFYAIESSANLA 597
Query: 488 EEKGRYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542
+EKG+Y ++GS W +GI P D +LK++ +RG + S+ +W+ LR ++K
Sbjct: 598 QEKGKYPQFEGSNWSKGIFPIDMANKEALKIV--DRGGLF-----SQQCDWESLRAKVKT 650
Query: 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGL 602
GMRN +AIAPT++IS ++G + +IEP YR + NLSG + +L
Sbjct: 651 QGMRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWYEENLSGLIPVVVPHL--------- 701
Query: 603 WDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNI 662
NL D Y +A++I II+A +VRQKWIDQ QS NI
Sbjct: 702 -------NL---------------DTWNYYVSAYDIEQTHIIKAAAVRQKWIDQGQSTNI 739
Query: 663 YI--SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
++ SGK L++ Y LAW GLK+TYYLRS S A++ + ++ VN
Sbjct: 740 FVRLDKASGKMLNDIYTLAWKLGLKSTYYLRSQSPE-AEEQVMDRSVECVN 789
>gi|21223594|ref|NP_629373.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
coelicolor A3(2)]
gi|8546892|emb|CAB94611.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
coelicolor A3(2)]
Length = 791
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 284/703 (40%), Positives = 419/703 (59%), Gaps = 38/703 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DPVYS++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 75 ISEDPVYSRLAARLLTIGIRAEAASQGVVT----------FTDSVATGHREGLIADRTAA 124
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + + D +F Y GL+ LY RY L R +E PQ F +R+A GL+
Sbjct: 125 FVRLHADRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAE 184
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT +Q+SSCYL P D+L +++ +
Sbjct: 185 DDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLH 244
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G +++VR+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 245 QVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 304
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG+D RRTH++N+A W+PD FM+RV TW+LFSP DVP
Sbjct: 305 AVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVP 364
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E + L + + + A L+ +++ L +TG+ W+TFKD N
Sbjct: 365 ELTDLWGEEFDAAYRRAE-EAGLAR----RTLPARELYGRMMRTLAQTGNGWMTFKDTAN 419
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPIKLKKT 409
+ Q ++HSSNLCTEI T E VCNLGS+NL + +G +D +L T
Sbjct: 420 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDAT 479
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 480 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 539
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY S +LAE G +++ + +G+L D + V +
Sbjct: 540 RIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPD------------HYGVEPAW 587
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR R+ G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 588 PERWAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 647
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV +LK+ G+WD L+ +G++ + IP+D+R +Y TA+EI +I+ +
Sbjct: 648 NSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAA 707
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
R ++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS
Sbjct: 708 RTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 750
>gi|289769188|ref|ZP_06528566.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
lividans TK24]
gi|289699387|gb|EFD66816.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
lividans TK24]
Length = 794
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 284/703 (40%), Positives = 419/703 (59%), Gaps = 38/703 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DPVYS++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 78 ISEDPVYSRLAARLLTIGIRAEAASQGVVT----------FTDSVATGHREGLIADRTAA 127
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + + D +F Y GL+ LY RY L R +E PQ F +R+A GL+
Sbjct: 128 FVRLHADRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAE 187
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT +Q+SSCYL P D+L +++ +
Sbjct: 188 DDTLRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLH 247
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G +++VR+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 248 QVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 307
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH D+EEF+ELR NTG+D RRTH++N+A W+PD FM+RV TW+LFSP DVP
Sbjct: 308 AVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVP 367
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EF+ +Y E + L + + + A L+ +++ L +TG+ W+TFKD N
Sbjct: 368 ELTDLWGEEFDAAYRRAE-EAGLAR----RTLPARELYGRMMRTLAQTGNGWMTFKDTAN 422
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPIKLKKT 409
+ Q ++HSSNLCTEI T E VCNLGS+NL + +G +D +L T
Sbjct: 423 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDAT 482
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA +
Sbjct: 483 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 542
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY S +LAE G +++ + +G+L D + V +
Sbjct: 543 RIAERIMLAAYETSADLAERNGPLPAWEKTRTAKGVLHPD------------HYGVEPAW 590
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR R+ G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++
Sbjct: 591 PERWAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQV 650
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV +LK+ G+WD L+ +G++ + IP+D+R +Y TA+EI +I+ +
Sbjct: 651 NSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAA 710
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
R ++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS
Sbjct: 711 RTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 753
>gi|302521844|ref|ZP_07274186.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SPB78]
gi|302430739|gb|EFL02555.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SPB78]
Length = 790
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 421/705 (59%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ F+ + G L+ + AE
Sbjct: 71 ISEDPAYSRLAARLLALAIVEEAAGQGASG----------FAASVAVGHREGLIGDRTAE 120
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ LY RY L R +E PQ+F +R+A GL+
Sbjct: 121 FVAAHAARLDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAA 180
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+E
Sbjct: 181 DDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYL 240
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 241 QVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAA 300
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D+RRTH +N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 301 AVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVP 360
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EFE +Y E K K I A L+ +++ L +TG W+TFKD N
Sbjct: 361 ELTDLWGEEFEAAYRAAE-----AKGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSN 415
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + ++HSSNLCTEI T E VCNLGSINL + NG +D +L +T+R
Sbjct: 416 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVR 475
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y +A SN R RPVGLG MG QD +++P+ S EA + +
Sbjct: 476 TAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRI 535
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE+ G +++ + +G+L D + V +
Sbjct: 536 AERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPD------------HYDVERTWPE 583
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR RI + GMRNS +AIAPTATI++I GV +EP NL + LSGEF ++N
Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LKK G+WD L+ +G++ + IP+++R +Y TA+E+ +I+ + R
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPAT 748
>gi|318060205|ref|ZP_07978928.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SA3_actG]
gi|318077112|ref|ZP_07984444.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sp. SA3_actF]
Length = 767
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 421/705 (59%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ F+ + G L+ + AE
Sbjct: 48 ISEDPAYSRLAARLLALAIVEEAAGQGASG----------FAASVAVGHREGLIGDRTAE 97
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ LY RY L R +E PQ+F +R+A GL+
Sbjct: 98 FVAAHAARLDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAA 157
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+E
Sbjct: 158 DDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYL 217
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 218 QVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAA 277
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D+RRTH +N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 278 AVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVP 337
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EFE +Y E K K I A L+ +++ L +TG W+TFKD N
Sbjct: 338 ELTDLWGEEFEAAYRAAE-----AKGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSN 392
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + ++HSSNLCTEI T E VCNLGSINL + NG +D +L +T+R
Sbjct: 393 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVR 452
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y +A SN R RPVGLG MG QD +++P+ S EA + +
Sbjct: 453 TAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRI 512
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE+ G +++ + +G+L D + V +
Sbjct: 513 AERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPD------------HYDVERTWPE 560
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR RI + GMRNS +AIAPTATI++I GV +EP NL + LSGEF ++N
Sbjct: 561 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 620
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LKK G+WD L+ +G++ + IP+++R +Y TA+E+ +I+ + R
Sbjct: 621 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 680
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 681 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPAT 725
>gi|302867101|ref|YP_003835738.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora
aurantiaca ATCC 27029]
gi|302569960|gb|ADL46162.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
aurantiaca ATCC 27029]
Length = 798
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/755 (38%), Positives = 429/755 (56%), Gaps = 53/755 (7%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL + KEV G+ + I Y L+ + A F
Sbjct: 89 EEPQYSKLAARLLAAYVDKEVRGQGVASFSQSIAYAHGLG----------LIGDETAGFV 138
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
+ L +A+ P+ DL+F Y GL+ + DRY L R +E PQ++ +R+A GLS
Sbjct: 139 ARHARKLDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLVVETPQYWLLRVACGLSRTP 198
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
A+ FY L+SS ++ S+PTLFNSGT +Q+SSC+L P D+L I+E + A
Sbjct: 199 GE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYERYHQVA 254
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G W++VR G+ I+GTNGRS G++PFLK ++ AVNQGG+RKGA C Y
Sbjct: 255 KLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVY 314
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+EEF+ELR NTG++ RRTH++N+A W+PD FM+RV W+L P D P+L
Sbjct: 315 LEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGEWSLVDPSDAPELP 374
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+ F+ +Y E + + A L+ +++ L +TG+ W+TFKDA N S
Sbjct: 375 DLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGNGWMTFKDAANRLS 427
Query: 357 PQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q + +IH SNLCTEI E VCNLGS+NL H+ +D +L+ T+R A+
Sbjct: 428 NQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGVDWERLRATVRTAV 487
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD VIDINYY ++A SN R RPVGLG+MG QD +++P+ S +A + + + E
Sbjct: 488 VFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAQAKELSTRVQEE 547
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I A S LAE G + +Y + +G L D +++ W
Sbjct: 548 ILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPD------------LWGAEPAQAGRWA 595
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR RI G+RNS VAIAPTATI++I G +EP NL + +SGEF ++N YLV
Sbjct: 596 ALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSGEFLQVNTYLV 655
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK +GLW + +K +G++ I+ +P +R+++ TA+E+ +I+ + R +I
Sbjct: 656 RELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALIDLAAARAPFI 715
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714
DQSQSLN+++S + KL Y AW GLKTTYYLRS A +++ + V+
Sbjct: 716 DQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVAPVLAPVS--- 772
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
G + + + L N E CE+CQ
Sbjct: 773 ----GVVSAVSDDEALACSLENPE-----SCEACQ 798
>gi|333024514|ref|ZP_08452578.1| putative ribonucleoside-diphosphate reductase, alpha subunit
[Streptomyces sp. Tu6071]
gi|332744366|gb|EGJ74807.1| putative ribonucleoside-diphosphate reductase, alpha subunit
[Streptomyces sp. Tu6071]
Length = 790
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/705 (41%), Positives = 421/705 (59%), Gaps = 36/705 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ F+ + G L+ + AE
Sbjct: 71 ISEDPAYSRLAARLLALAIVEEAAGQGASG----------FAASVAVGHREGLIGDRTAE 120
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ LY RY L R +E PQ+F +R+A GL+
Sbjct: 121 FVAAHAARLDALVDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAA 180
Query: 116 NESNREKCAI-KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++S + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+E
Sbjct: 181 DDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYL 240
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 241 QVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAA 300
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D+RRTH +N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 301 AVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVP 360
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G+EFE +Y E K K I A L+ +++ L +TG W+TFKD N
Sbjct: 361 ELTDLWGEEFEAAYRAAE-----AKGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSN 415
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + ++HSSNLCTEI T E VCNLGSINL + NG +D +L +T+R
Sbjct: 416 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVR 475
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y +A SN R RPVGLG MG QD +++P+ S EA + +
Sbjct: 476 TAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRI 535
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE+ G +++ + +G+L D + V +
Sbjct: 536 AERIMLAAYEASVDLAEKHGPVPAWEKTRTARGVLHPD------------HYDVERTWPE 583
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+ LR RI + GMRNS +AIAPTATI++I GV +EP NL + LSGEF ++N
Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV++LKK G+WD L+ +G++ + IP+++R +Y TA+E+ +I+ + R
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPAT 748
>gi|302558497|ref|ZP_07310839.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
griseoflavus Tu4000]
gi|302476115|gb|EFL39208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
griseoflavus Tu4000]
Length = 796
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 290/704 (41%), Positives = 420/704 (59%), Gaps = 40/704 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 81 ISEDPAYSRLAARLLTIGIRAEAASQGVTS----------FTGSVATGHREGLIADRTAA 130
Query: 61 FNLSLLS---NALLPER-DLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLS 114
F + L + +AL+ R D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 131 F-VRLHAERLDALVDTRADDRFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVAAGLA 189
Query: 115 LNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESI 172
++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I++
Sbjct: 190 EDDGARSVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRY 249
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 250 HQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGA 309
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV + W+LFSP DV
Sbjct: 310 AAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFSPADV 369
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G+EF+ +Y E Q L + + + A L+ +++ L +TG+ W+TFKD
Sbjct: 370 PGLVDLWGEEFDAAYRAAEAQ-GLAR----RTLPARELYGRMMRTLAQTGNGWMTFKDTA 424
Query: 353 NIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKK 408
N + Q + ++HSSNLCTEI T E VCNLGS+NL + G LD +L +
Sbjct: 425 NRTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQAAGDLDWERLDE 484
Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
T+R A+ LD V+DINYY ++A SN R RPVGLG MG QD L +++P+ S EA +
Sbjct: 485 TVRTAVTFLDRVVDINYYPTEQAGRSNARWRPVGLGAMGLQDVLFRLRLPFDSPEAKALS 544
Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528
+ E I AY S +LAE G +++ + +G+L D + ++
Sbjct: 545 TRIAERIMLAAYETSADLAERSGPLPAWEKTRTARGVLHPD------------HYDTELT 592
Query: 529 ESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTE 588
W LR RI GMRNS +AIAPTATI++I G IEP NL + LSGEF +
Sbjct: 593 WPERWAALRARIAAVGMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQ 652
Query: 589 INRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648
+N YLV++LK+ G+WD L+ G++ + IP+D+R++Y TA+EI +I+ +
Sbjct: 653 VNSYLVEDLKRLGVWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAA 712
Query: 649 VRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
R ++DQ+QSLN+++ + KL Y AW +GLKTTYYLRS
Sbjct: 713 ARTPFLDQAQSLNLFLETPTIGKLSSMYVHAWKQGLKTTYYLRS 756
>gi|345848583|ref|ZP_08801603.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
zinciresistens K42]
gi|345639928|gb|EGX61415.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
zinciresistens K42]
Length = 767
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/702 (41%), Positives = 415/702 (59%), Gaps = 38/702 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E + + F+ + G L+ + A
Sbjct: 49 ISEDPAYSRLAARLLTLSIAAEAASQGVTS----------FTGSVGTGHREGLIADRTAA 98
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + P D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 99 FVRTHAARLDALVDPGADDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFLLRVAAGLAE 158
Query: 116 NESNR--EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESI 172
++S R E+ A Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L +++
Sbjct: 159 DDSARSLEEVA-ALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSLYDRY 217
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ A LSK+AGG+G +++VRS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 218 HQVARLSKHAGGIGLSYSRVRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGA 277
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+LFSP DV
Sbjct: 278 AAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADRPWSLFSPSDV 337
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P+L + +G+EF+ +Y G + + + A L+ +++ L +TG+ W+TFKDA
Sbjct: 338 PELVDLWGEEFDAAYA---KAEAAGLAR--RTLPARELYGRMMRTLAQTGNGWMTFKDAA 392
Query: 353 NIRSPQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
N + Q + ++HSSNLCTEI T E VCNLGS+NL +++G LD +L +T+
Sbjct: 393 NRTANQTALPGNVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVRDGDLDWERLDETV 452
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
R A+ LD V+DIN+Y ++A SN + RPVGLG MG QD +++P+ S EA + +
Sbjct: 453 RTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTR 512
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E + AY AS +LAE G +++ + +G+L D + +
Sbjct: 513 IAERVMLAAYEASADLAERNGPLPAWEKTRTARGVLHPD------------HYGTAPAWP 560
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
W LR RI G+RNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 561 ERWAALRERIAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVN 620
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV ELK G+WD L+ G++ + IP D+R +Y TA+EI +I+ + R
Sbjct: 621 SYLVDELKALGVWDARTREALRDASGSVQDFAWIPADVRALYRTAWEIPQRALIDMAAAR 680
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
++DQSQSLN+++ + KL Y AW GLKTTYYLRS
Sbjct: 681 TPYLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRS 722
>gi|297192179|ref|ZP_06909577.1| class Ia ribonucleotide-diphosphate reductase large subunit protein
[Streptomyces pristinaespiralis ATCC 25486]
gi|297151244|gb|EDY64084.2| class Ia ribonucleotide-diphosphate reductase large subunit protein
[Streptomyces pristinaespiralis ATCC 25486]
Length = 800
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/706 (40%), Positives = 418/706 (59%), Gaps = 38/706 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I +E G+ F+ + G L+ + A
Sbjct: 87 ISEDPAYSRLAARLLTRTIAEEAAGQGASS----------FTASVATGHREGLIADRTAA 136
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + D +F Y GL+ LY RY L R IE PQ F +R+A GL+
Sbjct: 137 FVALHAARLDALIDLGADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAE 196
Query: 116 NESNR--EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESI 172
++S R E+ A Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 197 DDSPRALEEVA-ALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYGRY 255
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
+ A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 256 HQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGA 315
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DV
Sbjct: 316 AAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPVDV 375
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P+L + +G++F+ +Y E L + + +SA L+ +++ L +TG+ W+TFKDA
Sbjct: 376 PELVDLWGEDFDAAYRRAE-AAGLAR----RTVSARDLYGRMMRTLAQTGNGWMTFKDAS 430
Query: 353 NIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
N + Q + ++HSSNLCTEI T E VCNLGS+NL + +D +L T+
Sbjct: 431 NRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGDGIDWERLDATV 490
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +++P+ S EA + +
Sbjct: 491 RTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAEARALSTR 550
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E I AY AS +LAE G ++ + +G+L D + ++
Sbjct: 551 IAERIMLAAYEASCDLAERNGPLPAWAETRTARGVLHPD------------HYDTTLNWP 598
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
W+ LR R+ GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 599 ERWEALRARVAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVN 658
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
YLV +LK+ G+WD L+ G++ + +P+++R +Y TA+EI +I+ + R
Sbjct: 659 SYLVDDLKRLGVWDAQTREALREASGSVQGFTWVPEEIRALYRTAWEIPQRGLIDMAAAR 718
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A
Sbjct: 719 TPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT 764
>gi|254384640|ref|ZP_04999979.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
Mg1]
gi|194343524|gb|EDX24490.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
Mg1]
Length = 797
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/765 (40%), Positives = 441/765 (57%), Gaps = 59/765 (7%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL ++ E G+ FS + G L+ + A
Sbjct: 76 ISEDPAYSRLAARLLTLAVRDEAAGQGATS----------FSASVAVGHREGLIADRTAA 125
Query: 61 F------NLSLLSNALLPE-RDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAM 111
F L L L E D +F + GL+ L+ RY L R +E PQ F +R+A
Sbjct: 126 FVEAHAARLDALVEYTLAEGADDRFGFFGLRTLHSRYLLRHPITRQVVETPQHFMLRVAC 185
Query: 112 GLSLNESNR--EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGI 168
GL+ +ES + E+ A Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I
Sbjct: 186 GLAADESVQAVEEVA-SLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSI 244
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ + A LSK+AGG+G ++++R+ GS I+GTNG S G++PFLK ++ AVNQGG+
Sbjct: 245 YDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGR 304
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
RKGA YLETWH DIEEF+ELR NTG+D+RRTH++N+A WVPD FM+RV + W+LFS
Sbjct: 305 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFMRRVNADADWSLFS 364
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P DVP+L + +G +F+ +Y E L + K + A L+ +++ L +TG W+TF
Sbjct: 365 PADVPELVDLWGDDFDAAYRKAEAD-GLAR----KTMPARDLYGRMMRTLAQTGQGWMTF 419
Query: 349 KDACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPI 404
KDA N + Q + ++HSSNLCTEI T+ E VCNLGS+NL + + G++D
Sbjct: 420 KDASNRTANQTAEPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVLTETGEIDWE 479
Query: 405 KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEA 464
+L +T+R A+ LD V+DIN+Y ++A SN R RPVGLG MG QD +K+P+ S EA
Sbjct: 480 RLDETVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLKLPFDSPEA 539
Query: 465 IKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLK 524
+ + E I AY AS +LAE G +++ + +G+L D +
Sbjct: 540 KALSTKLSERIMLAAYEASCDLAERSGPLPAWEQTRTARGVLHPDHYD----------TE 589
Query: 525 VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG 584
+N E W LR R+ + GMRNS +AIAPTATI++I GV IEP NL + LSG
Sbjct: 590 LNWPE--RWDALRARVAESGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSG 647
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EF ++N YLV+ELKK G+WD L+ G++ IP ++R++Y TA+EI +I
Sbjct: 648 EFLQVNGYLVEELKKLGVWDAQSREALREASGSVQGFGWIPAEVRELYRTAWEIPQRGLI 707
Query: 645 EAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
+ + R ++DQSQSLN+++ + KL Y AW +GLKTTYYLRS A K +
Sbjct: 708 DMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT--KIARAA 765
Query: 705 MGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
V L + + + + L S + + CE+CQ
Sbjct: 766 QAATPVALPQAVV------------DAEALACS-LENPESCEACQ 797
>gi|297202282|ref|ZP_06919679.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sviceus ATCC 29083]
gi|197710198|gb|EDY54232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
sviceus ATCC 29083]
Length = 796
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 294/713 (41%), Positives = 419/713 (58%), Gaps = 44/713 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E + + F+ + G L+ + AE
Sbjct: 76 ISEDPAYSRLAARLLTVSIAAEAASQGVTS----------FTGSVAVGHREGLIADRTAE 125
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + E D +F Y GL+ LY RY L R IE PQ F +R+A GL+
Sbjct: 126 FVRVHAERLDALVDTEADDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLRVASGLAD 185
Query: 116 N---ESNREKCAI----KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYG 167
+ +S A+ Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L
Sbjct: 186 DTVLDSETGAHALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDS 245
Query: 168 IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG 227
I++ + A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG
Sbjct: 246 IYDRYHQVANLSKHAGGIGISYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGG 305
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLF 287
+RKGA YLETWH DIEEF+ELR NTG+D RRTH++N+A WVPD FM+RV + W+LF
Sbjct: 306 RRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAEWSLF 365
Query: 288 SPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWIT 347
SP DVP+L + +G+EF+ +Y E + L + + I A L+ +++ L +TG+ W+T
Sbjct: 366 SPADVPELVDLWGEEFDAAYRKAEAE-GLAR----RTIPARDLYGRMMRTLAQTGNGWMT 420
Query: 348 FKDACNIRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDP 403
FKDA N + Q + +HSSNLCTEI T E VCNLGS+NL + +G +D
Sbjct: 421 FKDAANRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTTSGDIDW 480
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L T+R A+ LD V+DIN+Y ++A SN + RPVGLG MG QD +++P+ S E
Sbjct: 481 ERLDATVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSPE 540
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A + + E I AY AS +LAE G +++ + QG+L D +
Sbjct: 541 ARALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTAQGVLHPD------------HY 588
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
+++ W LR R+ G+RNS +AIAPTATI++I GV IEP NL + LS
Sbjct: 589 ATDLAWPERWAALRERMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLS 648
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
GEF ++N YLV ELKK G+WD L+ +G++ + IP+D+R +Y TA+EI +
Sbjct: 649 GEFLQVNSYLVAELKKLGVWDARTREALREANGSVQGFAWIPEDVRALYRTAWEIPQRGL 708
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
I+ + R ++DQ+QSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 709 IDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 761
>gi|357391821|ref|YP_004906662.1| putative ribonucleoside-diphosphate reductase subunit alpha
[Kitasatospora setae KM-6054]
gi|311898298|dbj|BAJ30706.1| putative ribonucleoside-diphosphate reductase subunit alpha
[Kitasatospora setae KM-6054]
Length = 804
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/715 (41%), Positives = 424/715 (59%), Gaps = 47/715 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E +++ FS + G L+ A
Sbjct: 73 IAEDPQYSKLAARLLALEIRDEAATQQVTS----------FSSSVAVGHAEGLIGDATAA 122
Query: 61 FNLSL--LSNALLPER-DLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L ++L+ E D +F Y GL+ + RY L R +E PQ F +R+A GL++
Sbjct: 123 FVAAHADLFDSLVDEAGDDRFEYFGLRTVQSRYLLRHPITRKVVETPQHFLLRVAAGLAV 182
Query: 116 N---ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFES 171
ES RE + Y L+S ++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 183 GTSEESVREVA--ELYTLMSRLEYLTSSPTLFNSGTRHPQMSSCYLLDSPLDNLDSIYNR 240
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKG 231
+ A LSK+AGG+G ++++RS GS I+GTNG+S G++PFL+ ++ AVNQGG+RKG
Sbjct: 241 YAQIARLSKHAGGIGLSYSRIRSRGSLIRGTNGQSNGIVPFLRTLDSSVAAVNQGGRRKG 300
Query: 232 AICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291
A C YLETWH DIEEF+ELR NTG++ RRTH++N+A W+PD FM+RV + W+LFSP D
Sbjct: 301 AACVYLETWHADIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFSPAD 360
Query: 292 VPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
VP+L + +G +F+E+Y+ E K + I A L+ +++ L +TG+ W+TFKDA
Sbjct: 361 VPELVDLWGADFDEAYVKAELAG-----KAVRTIPAQTLYARMMRTLAQTGNGWMTFKDA 415
Query: 352 CNIRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG--------KL 401
N + Q + +HSSNLCTEI T +E VCNLGS+NL H+ G +
Sbjct: 416 SNRAANQTALPGRTVHSSNLCTEILEVTDDSETAVCNLGSVNLGAHVAPGATAADLLNAM 475
Query: 402 DPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
D +L T+R A+ LD VIDIN+Y +A SN R RPVGLG+MG QD ++I + S
Sbjct: 476 DWDRLDATVRTAVTFLDRVIDINFYPTTEAGTSNSRWRPVGLGVMGLQDVFFQLRIDFDS 535
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
EA+ + E I AY S +LAE GR+ +Y + +G L D
Sbjct: 536 AEAVALSTLIAERIMLTAYERSADLAERFGRHEAYGETRAARGQLHVD-----------H 584
Query: 522 YLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ N + W LR RI + G+RNS +AIAPTATI++I GV IEP NL +
Sbjct: 585 FGAANPQWTERWDALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRET 644
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
LSGEF ++N YLV+ELK+ G+WD+ L+ +G++ + + +P ++R +Y TA+E+
Sbjct: 645 LSGEFLQVNPYLVRELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRSLYRTAWELPQR 704
Query: 642 WIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+I+ + RQ +IDQSQSLN++++ + KL Y AW GLKTTYYLRS A
Sbjct: 705 ALIDLAAARQPYIDQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKTTYYLRSRPAT 759
>gi|386842423|ref|YP_006247481.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374102724|gb|AEY91608.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451795716|gb|AGF65765.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 786
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 286/707 (40%), Positives = 418/707 (59%), Gaps = 38/707 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I+ E + + F++ I G L+ + AE
Sbjct: 71 ISEDPAYSKLAARLLTLAIRDEAASQGVSS----------FTESIAVGHREGLIADRTAE 120
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + L + D +F Y GL+ L+ RY L R +E PQ F +R+A GL+
Sbjct: 121 FVRLHAERLDALVDRTADDRFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVASGLAE 180
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
++++R + Y L+S +++ S+PTLFNSGT Q+S+CYL P D+L I++
Sbjct: 181 DDTSRSVDEVAALYGLMSRLDYLPSSPTLFNSGTPHPQMSACYLLDSPLDELDSIYDRYH 240
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 241 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 300
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+LFSP DVP
Sbjct: 301 AVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVP 360
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G++F+ +Y E L K K I+A L+ +++ L +TG+ W+TFKDA N
Sbjct: 361 ELVDLWGEDFDAAYRKAE-AAGLAK----KTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 415
Query: 354 IRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKT 409
+ Q + ++HSSNLCTEI T+ E VCNLGS+NL + +G +D +L +T
Sbjct: 416 RTANQTAEPGNVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVDAASGDIDWERLDQT 475
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+R A+ LD V+DIN+Y ++A SN + RPVGLG MG QD +++P+ S EA +
Sbjct: 476 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKALST 535
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
+ E I AY S +LAE G ++D + +G+L D + V +
Sbjct: 536 RIAERIMLAAYETSADLAERNGPLPAWDQTRAARGVLHPD------------HYDVQFTW 583
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
W LR R+ GMRN+ +AIAPT+TI++I GV IEP NL + LSGEF ++
Sbjct: 584 PERWAALRERVAAVGMRNALMLAIAPTSTIASIAGVYECIEPQVSNLFKRETLSGEFLQV 643
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YLV++LK G+WD L+ +G++ IP++ R +Y TA+EI +I+ +
Sbjct: 644 NSYLVQDLKNLGVWDARTREALRDSNGSIQDFPWIPEETRALYRTAWEIPQRGLIDMAAA 703
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
R ++DQ QSLN+++ + KL Y AW GLKTTYYLRS A
Sbjct: 704 RTPYLDQGQSLNLFMETPTIGKLSSMYAYAWKSGLKTTYYLRSRPAT 750
>gi|154149160|ref|YP_001407242.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
hominis ATCC BAA-381]
gi|153805169|gb|ABS52176.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
hominis ATCC BAA-381]
Length = 793
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 312/749 (41%), Positives = 433/749 (57%), Gaps = 104/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + +V + +EYF + +G K+L +++L
Sbjct: 71 PNWTFVAARLFLYDLYHKV-----TTFNGYNSLREYFERGEKEG---KILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + + P+RDLQF YLG+K LYDRY L R IE+PQ FM IAM L+ NE + +
Sbjct: 123 DLQDYIKPQRDLQFTYLGIKTLYDRYLLKDNEARPIELPQQMFMAIAMFLAQNELDCQTW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+LLS F MC+TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+ G
Sbjct: 183 AKKFYDLLSKFEVMCATPTLSNARTPRHQLSSCYVGSTPDNIEGIFDSFKEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+ETWHMD
Sbjct: 243 GIGWDWSKVRAIGGSIDGNKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIATYIETWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++LRKN+G++RRR H++ A+W+ DLFMKR+ K + WTLF P +V DL + +G+EF
Sbjct: 303 IGDFLDLRKNSGEERRRAHELFPALWINDLFMKRLEKNANWTLFDPAEVSDLCDCYGEEF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ YI YEN +K+ K I A LW+KIL+ FE+G P++ FKD N +P H GI
Sbjct: 363 EKKYIEYENNSKISK----SLIPAKELWKKILTSCFESGMPFLCFKDNANKANPNAHEGI 418
Query: 364 IHSSNLCTEITLNTSKNEIGV---CNLGSINL-------TLH---MKNGK----LDPI-- 404
I SSNLCTEI NT N + N GSI L TL +K GK LD +
Sbjct: 419 IRSSNLCTEIFQNTRPNHYKIKVTFNDGSIKLFEEEDDITLDNGLIKKGKKITSLDALDG 478
Query: 405 --------------------------------KLKKTIRIAMRMLDNVIDINYYAVKKAK 432
+++ + IA+RMLDNVI++N+Y K K
Sbjct: 479 KDVFCVEKAYDEGLTAVCNLASINLSKINTKEDIQRVMPIAIRMLDNVINLNFYPHIKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
++NL+ R +GLG+MG L IP+ S E +F D+ ME I Y A AS+ LA EKG+
Sbjct: 539 HTNLKTRAIGLGVMGEAQMLATKGIPWGSYEHFEFIDKIMENISYNAILASSNLAIEKGK 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM---SESLNWKKLRNRIKKFGMRNSN 549
Y ++GS W +GI+P D L E +K + +WK LR ++KK GMRN
Sbjct: 599 YPDFEGSNWSKGIMPID----LANEEAKALVKRGGLFDEDGCDWKYLREKVKKDGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV-------------------- 694
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
+ + D ++Y A+E+ +I+A +VRQKWIDQ QSLNI+IS
Sbjct: 695 -----------VPNLSPDTWQLYTPAYELDQRLLIKAAAVRQKWIDQGQSLNIFISLEKS 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISAN 696
S + L++ Y LAW GLK+TYYLRS S +
Sbjct: 744 SARILNDIYTLAWKLGLKSTYYLRSQSPD 772
>gi|254388986|ref|ZP_05004217.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
clavuligerus ATCC 27064]
gi|294814922|ref|ZP_06773565.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
ATCC 27064]
gi|326443294|ref|ZP_08218028.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
clavuligerus ATCC 27064]
gi|197702704|gb|EDY48516.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
clavuligerus ATCC 27064]
gi|218078698|emb|CAB90707.4| class Ia ribonucleotide-diphosphate reductase large subunit chain
[Streptomyces clavuligerus ATCC 27064]
gi|294327521|gb|EFG09164.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
ATCC 27064]
Length = 810
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/758 (39%), Positives = 428/758 (56%), Gaps = 48/758 (6%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP YS++ ARLL I E + FS + G L+ + A
Sbjct: 92 IAEDPAYSRLAARLLTLTIGDEARSQGAVS----------FSASVAVGHTEGLIADRTAA 141
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + + D +F Y GL+ LY RY L R +E PQ F +R+A GL+
Sbjct: 142 FVALHSARLDALIDLDADDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVACGLAE 201
Query: 116 NESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
+++ R + Y L+S +++ S+PTLFNSGT Q+SSCYL P D+L I+
Sbjct: 202 DDTERALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYGRYH 261
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS GS I+GTNG S G++PFLK ++ AVNQGG+RKGA
Sbjct: 262 QVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAA 321
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+LFSP DVP
Sbjct: 322 AVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFSPADVP 381
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+L + +G EF+ +Y E L + + + A L+ +++ L +TG+ W+TFKDA N
Sbjct: 382 ELVDLWGDEFDAAYRKAE-AAGLAR----RTLPARELYGRMMRTLAQTGNGWMTFKDASN 436
Query: 354 IRSPQQHVG--IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
+ Q + +HSSNLCTEI T E VCNLGS+NL + G +D +L T+R
Sbjct: 437 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGDIDWERLDATVR 496
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
A+ LD V+DIN+Y ++A SN + RPVGLG MG QD +++P+ S EA + +
Sbjct: 497 TAVTFLDRVVDINFYPTEQAGRSNTKWRPVGLGAMGLQDVFFQLRLPFDSAEARALSTRI 556
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I AY AS +LAE G +++ + +G+L D + V
Sbjct: 557 AERIMLAAYEASADLAERHGPLPAWEKTRTARGVLHPD------------HYGVEQHWPE 604
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W LR R+ GMRNS +AIAPTATI++I GV IEP NL + LSGEF ++N
Sbjct: 605 RWAALRERVATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNS 664
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YLV ELK+ G+WD L+ G++ + +PD++R++Y TA+EI +I+ + R
Sbjct: 665 YLVAELKRLGVWDAQTREALRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAART 724
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
+IDQSQSLN+++ + KL Y AW +GLKTTYYLRS A I
Sbjct: 725 PYIDQSQSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATR---------IARAA 775
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+ +Q++ + + + + CE+CQ
Sbjct: 776 SGTAAAAPATVPVQQVPQDA---VACSLENPESCEACQ 810
>gi|109947415|ref|YP_664643.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
acinonychis str. Sheeba]
gi|109714636|emb|CAJ99644.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
acinonychis str. Sheeba]
Length = 788
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 319/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNYPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G+EF
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAIWTLFDPYECKDLSELYGQEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHTGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L KI + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQISYHAIDTSVNLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K FGMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANKEALKLTEKGL--------FNYACDWQGLREKVKTFGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I A +VRQKWIDQ QS+N++ +
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIRAAAVRQKWIDQGQSINVFLRVE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECHN 786
>gi|256825984|ref|YP_003149944.1| ribonucleoside-diphosphate reductase subunit alpha [Kytococcus
sedentarius DSM 20547]
gi|256689377|gb|ACV07179.1| ribonucleoside-diphosphate reductase, alpha subunit [Kytococcus
sedentarius DSM 20547]
Length = 875
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 292/740 (39%), Positives = 429/740 (57%), Gaps = 72/740 (9%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF-- 61
+P YS++ RLL I KEV G+ I FS + G + L+ + A F
Sbjct: 104 EPQYSRLAGRLLAGVIDKEVRGQGIGS----------FSAAVRTGHEQGLIGDETAAFVA 153
Query: 62 -NLSLLSNAL----LPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLS 114
+ S L +A+ D +F+Y GL+ +YDRY L R +E PQ++ MR++ GLS
Sbjct: 154 EHASRLDDAVYRAQAAHADWRFDYFGLRTVYDRYLLRHPLTRAVVESPQYWLMRVSAGLS 213
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIK 173
A++F+ LLSS ++ S+PTLFNSGT +Q+SSCYL P DDL I+E
Sbjct: 214 HTGEE----AVEFFELLSSLAYLPSSPTLFNSGTRHTQMSSCYLIDSPQDDLDSIYERYH 269
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233
+ A LSK+AGG+G ++++RS G+ I+GTNG S G++P+L+ ++ AVNQGG+RKGA
Sbjct: 270 QVAKLSKFAGGIGLAFSRIRSRGALIRGTNGHSNGIVPWLRTLDASVAAVNQGGRRKGAA 329
Query: 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP 293
C YLE WH D+EEF+ELR NTG+D RRTH++N+A W+PD FM+RV W+L P VP
Sbjct: 330 CIYLEPWHPDVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADGQWSLIDPDAVP 389
Query: 294 DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD--- 350
+L + +G F+ +Y E + + + +SA YL+ +++ L +TG W+TFKD
Sbjct: 390 ELPDLWGPAFDAAYRAAEE-----RGDVVRTVSARYLYGRMMRTLAQTGQGWMTFKDASN 444
Query: 351 -ACNIRS----PQ-------QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-- 396
ACN S P+ Q ++H SNLCTEI TS +E VCNLGS+NL H+
Sbjct: 445 RACNQTSDDQTPRVAADGTVQPAPVVHLSNLCTEIIEVTSNDETAVCNLGSVNLAAHLQW 504
Query: 397 --------------KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVG 442
+ +D +L+ T+R+A+ LD VIDINYY ++A SN R RP+G
Sbjct: 505 SDGTTGVRPTDPAARATGIDTDRLRSTVRLAVTYLDRVIDINYYPSEQAAASNPRWRPIG 564
Query: 443 LGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWD 502
LG MG QD +++P+ + EA + + + E I A S ELAE+ G + ++ +
Sbjct: 565 LGSMGLQDVFFALRMPFDAPEAKELSTRIAEEIQLSALERSAELAEQFGAHPAFAETRAA 624
Query: 503 QGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNI 562
+G L D V +++ W +R RI G+RNS +AIAPTATI++I
Sbjct: 625 RGQLQHD------------LQGVEPTQTERWAAVRQRIADHGLRNSLMIAIAPTATIASI 672
Query: 563 IGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQIS 622
G IEP NL + LSGEF ++N LV ELK GLW E++ LK +G+++ I+
Sbjct: 673 AGCYECIEPQVSNLFKRETLSGEFMQVNTALVGELKSLGLWTEAVREKLKADNGSVAGIA 732
Query: 623 RIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLR 682
+P++ R+++ TA+E+ +IE + RQ ++DQSQSLN+++ + + KL Y AW
Sbjct: 733 DLPEETRRLFRTAWELPQKALIEMAAARQAYVDQSQSLNLFMESPNIGKLSSMYLYAWKA 792
Query: 683 GLKTTYYLRSISANYAKKSN 702
GLKTTYYLRS A +++
Sbjct: 793 GLKTTYYLRSRPATRIQQAT 812
>gi|420457020|ref|ZP_14955839.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-16]
gi|393074418|gb|EJB75178.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-16]
Length = 788
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKAAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420462048|ref|ZP_14960834.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-3]
gi|393079783|gb|EJB80514.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-3]
Length = 788
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFDNAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKAAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385222119|ref|YP_005771252.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori SouthAfrica7]
gi|317010898|gb|ADU84645.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori SouthAfrica7]
Length = 788
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 319/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K L+DRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLHDRYLLKDANNYPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G+EF
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLSELYGQEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L KI + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K FGMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANKEALKLTEKGL--------FNYACDWQGLREKVKTFGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECHN 786
>gi|386755701|ref|YP_006228918.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori PeCan18]
gi|384561959|gb|AFI02425.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori PeCan18]
Length = 788
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 319/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A ST LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSTNLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S N +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPNIDEKSVLDRSVECFN 786
>gi|420451999|ref|ZP_14950849.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-6]
gi|393069840|gb|EJB70635.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-6]
Length = 788
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFDNAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTVPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|336454080|ref|YP_004608546.1| ribonucleotide reductase of class Ia (aerobic),subunit alpha
[Helicobacter bizzozeronii CIII-1]
gi|335334107|emb|CCB80834.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Helicobacter bizzozeronii CIII-1]
Length = 786
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 314/764 (41%), Positives = 423/764 (55%), Gaps = 115/764 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL +Y + +V G K+YF + +G ++ +F+L
Sbjct: 73 PNWSFVAARLFLYDLYHQVNGSRDY-----THLKDYFKRGEQEG---RIALGFKDKFDLE 124
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ AL PERDLQFNYLG+K LYDRY L +G IE+PQ FM IAM L+ NES+
Sbjct: 125 QLNRALAPERDLQFNYLGIKTLYDRYLLKDSQGNPIELPQHMFMAIAMFLAQNESDPNAR 184
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T QLSSCY+ + PD++ GIF+S K+ ALLSKY G
Sbjct: 185 ALEFYGVLSKFELMCATPTLANARTPNHQLSSCYVGSTPDNIEGIFDSYKDMALLSKYGG 244
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR LGS I G S GVIPFLK+VNDVA+AV+Q G RKGAI YLE WHMD
Sbjct: 245 GIGWDFSQVRCLGSYIDGHKSASAGVIPFLKIVNDVAIAVDQLGTRKGAIAVYLEIWHMD 304
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I EFI+LRKN+GD+RRR HD+ A+W+ DLFM+RV + WTLF PY PDL +G F
Sbjct: 305 ILEFIDLRKNSGDERRRAHDLFPALWICDLFMERVEQDGVWTLFDPYACPDLTQCYGAAF 364
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
+ Y+ YE + K +K+SA LWRKIL+ FE G P++ FKD N +P H G+
Sbjct: 365 RQKYLDYEQDPTIPK----EKMSAKSLWRKILTNYFEAGLPFLGFKDNANHANPNPHAGL 420
Query: 364 IHSSNLCTEITLNTSKN--------EIGVC------------------------------ 385
I SSNLCTEI NTS E G C
Sbjct: 421 IRSSNLCTEIYQNTSAGHYRMRVEFEGGDCVFFEEQAEVSTDAGVSKKANKLTSNDCLGG 480
Query: 386 ------------------NLGSINLTLHMKNGKLD-PIKLKKTIRIAMRMLDNVIDINYY 426
NL S+NL+ K++ P +++ + IA+RMLDNVID+N+Y
Sbjct: 481 KKIFMATKVPEEGTLAVCNLASLNLS------KINTPKDIERVVPIAVRMLDNVIDLNFY 534
Query: 427 AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTEL 486
KAK +NL+ R +GLG+MG L +I + S E DQ +E + Y AS+ L
Sbjct: 535 PTAKAKNTNLKSRAIGLGVMGEAQMLAQNQIKWGSVEHRTKIDQVLEKMSYETILASSNL 594
Query: 487 AEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
A+E+G Y+ ++GS W +G+ P D K E L +W L+ R++K G+R
Sbjct: 595 AQERGSYTHFEGSEWSKGVFPMDKAKPEALELSPHALMC------DWTSLKARVQKQGLR 648
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 NGYLMAIAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVV----------------- 691
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI-- 664
+ NL N Y +A++I P I+ +VRQKWIDQ QSLN+++
Sbjct: 692 -VPNLNLETWNY-------------YTSAYDIDPKDIVRLAAVRQKWIDQGQSLNLFLRP 737
Query: 665 SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
SGK L E Y LAW GLK+TYYLR+ S + K + I+
Sbjct: 738 QEASGKLLHEIYHLAWKLGLKSTYYLRTQSPSLDDKGVLDRSIE 781
>gi|420450333|ref|ZP_14949195.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-45]
gi|393067478|gb|EJB68288.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-45]
Length = 788
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 319/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDASNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A ST LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIETSTNLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420485710|ref|ZP_14984328.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-4]
gi|420516207|ref|ZP_15014670.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-4c]
gi|420517908|ref|ZP_15016362.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-4d]
gi|393103845|gb|EJC04408.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-4]
gi|393123407|gb|EJC23876.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-4d]
gi|393124506|gb|EJC24974.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-4c]
Length = 788
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420475520|ref|ZP_14974191.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-21]
gi|393093627|gb|EJB94244.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-21]
Length = 788
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYISTKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420430471|ref|ZP_14929499.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-20]
gi|393047168|gb|EJB48143.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-20]
Length = 788
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 VTNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420482251|ref|ZP_14980888.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-2]
gi|420512674|ref|ZP_15011157.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-2b]
gi|393099485|gb|EJC00067.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-2]
gi|393157737|gb|EJC57998.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-2b]
Length = 788
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 434/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKN--------------------------EIGVC--NLGSINL--- 392
I SSNLCTEI NT+ N +I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSDITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420465377|ref|ZP_14964144.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-6]
gi|393082864|gb|EJB83580.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-6]
Length = 788
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|383777026|ref|YP_005461592.1| putative ribonucleoside-diphosphate reductase large subunit
[Actinoplanes missouriensis 431]
gi|381370258|dbj|BAL87076.1| putative ribonucleoside-diphosphate reductase large subunit
[Actinoplanes missouriensis 431]
Length = 786
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/713 (40%), Positives = 421/713 (59%), Gaps = 43/713 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
++P YS++ ARLL +++EV + + FS+ I G L++ + A F
Sbjct: 83 EEPQYSRLAARLLAAFVEQEVREEGVAG----------FSESIRLGHQQGLISDETAAFV 132
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE 117
+ ++L A+ +L+F Y GL+ + DRY L R IE PQ + +R+A GLS E
Sbjct: 133 AEHATVLDQAIDDANNLRFEYFGLRTVADRYLLRHPTKRTVIETPQHWLLRVACGLS--E 190
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ E AI FY L+SS ++ S+PTLFNSGT +Q+SSC+L P D+L I+E + A
Sbjct: 191 TPGE--AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPKDELDSIYERYHQVA 248
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
LSK++GG+G W++VR G+ I+GTNG+S G++PFLK ++ AVNQGG+RKGA C Y
Sbjct: 249 KLSKFSGGIGISWSRVRGRGALIRGTNGKSNGIVPFLKTLDAGVAAVNQGGRRKGAACVY 308
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DIEEF+ELR NTG++ RRTH++N+A W+PD FM+RV W+L P D P L
Sbjct: 309 LEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADEDWSLIDPSDAPMLP 368
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ FG EF E+Y E K I A L+ +++ L +TG+ W+TFKD N S
Sbjct: 369 DLFGDEFTEAYRAAEKNA-------VKTIKARDLYGRMMRTLAQTGNGWMTFKDPSNRLS 421
Query: 357 PQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
Q +IH SNLCTEI + E VCNLGS+NL H+ +D KL++T+R A+
Sbjct: 422 NQTGAPGNVIHLSNLCTEILEVNNDAETAVCNLGSVNLGAHVTADGVDWEKLRETVRTAV 481
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
LD VIDINYY ++A SN R RPVGLG+MG QD +++P+ S EA + + + E
Sbjct: 482 VFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEARELSTRVQEE 541
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL-KVNMSESLNW 533
I A +S LAE G + +Y + +G L YL S++ W
Sbjct: 542 IFLTALESSAALAERFGPHPAYPETRAAKGDL-------------HPYLWGAEPSQNARW 588
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
++ RI G+RNS VAIAPTATI++I G IEP NL + +SGEF +IN YL
Sbjct: 589 AAVKERIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTYL 648
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V+ELK + LW + +K +G++ I+ +P D+R+++ TA+E+ +I+ + R +
Sbjct: 649 VRELKSRNLWTAGIREAIKRAEGSVQGIAELPADVRELFRTAWELPQRALIDLAAARAPY 708
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
IDQSQSLN++++ + K+ Y AW GLKT+YYLRS A +++ +
Sbjct: 709 IDQSQSLNLFMAAPTIGKVSSMYLYAWKAGLKTSYYLRSRPATRIQQATVSVA 761
>gi|385218940|ref|YP_005780415.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Gambia94/24]
gi|317014098|gb|ADU81534.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Gambia94/24]
Length = 788
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420425362|ref|ZP_14924423.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-5]
gi|393041780|gb|EJB42794.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-5]
Length = 788
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEREPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385217448|ref|YP_005778924.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F16]
gi|317177497|dbj|BAJ55286.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F16]
Length = 788
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420474181|ref|ZP_14972857.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-19]
gi|393089317|gb|EJB89957.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-19]
Length = 788
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A ST LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIETSTNLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|386752665|ref|YP_006225884.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi169]
gi|384558923|gb|AFH99390.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi169]
Length = 788
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+GK L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGKTAVCNLASINLSKINTEEDIKRVVSIIVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANSEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420435968|ref|ZP_14934967.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-27]
gi|393051827|gb|EJB52778.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-27]
Length = 788
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|425433539|ref|ZP_18814073.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori GAM100Ai]
gi|410713881|gb|EKQ71373.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori GAM100Ai]
Length = 785
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDTMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|420410214|ref|ZP_14909357.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4200]
gi|393028527|gb|EJB29613.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4200]
Length = 788
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLENAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420443675|ref|ZP_14942603.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-41]
gi|393061182|gb|EJB62051.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-41]
Length = 788
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKAAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|421718297|ref|ZP_16157596.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R038b]
gi|407221563|gb|EKE91367.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R038b]
Length = 785
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 319/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G+EF
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLSELYGQEF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDSNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 691 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|420440446|ref|ZP_14939402.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-30]
gi|393056673|gb|EJB57584.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-30]
Length = 788
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 VTNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y + S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFKNSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|386751078|ref|YP_006224298.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi417]
gi|384557336|gb|AFH97804.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi417]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGRTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDTLMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + NW+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACNWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420519639|ref|ZP_15018081.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-5b]
gi|393126703|gb|EJC27151.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-5b]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y + S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFKNSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420448696|ref|ZP_14947576.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-44]
gi|393066050|gb|EJB66878.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-44]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFDNAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTVPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSVDEKSVLDRSVECFN 786
>gi|420401788|ref|ZP_14900979.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6081]
gi|393017607|gb|EJB18759.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6081]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNHITKCANKLTSTDILKD 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLKNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|386746161|ref|YP_006219378.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori HUP-B14]
gi|384552410|gb|AFI07358.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori HUP-B14]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYADGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|384891057|ref|YP_005765190.1| Ribonucleotide reductase of class Ia/alpha subunit [Helicobacter
pylori 908]
gi|385223731|ref|YP_005783657.1| Ribonucleotide diphosphate reductase alpha subunit [Helicobacter
pylori 2017]
gi|385231582|ref|YP_005791501.1| Ribonucleotide reductase of class Ia,alpha subunit [Helicobacter
pylori 2018]
gi|307637366|gb|ADN79816.1| Ribonucleotide reductase of class Ia/alpha subunit [Helicobacter
pylori 908]
gi|325995959|gb|ADZ51364.1| Ribonucleotide reductase of class Ia,alpha subunit [Helicobacter
pylori 2018]
gi|325997553|gb|ADZ49761.1| Ribonucleotide diphosphate reductase alpha subunit [Helicobacter
pylori 2017]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L ++I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAELQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420406864|ref|ZP_14906034.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6311]
gi|393023701|gb|EJB24815.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6311]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLKNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W++GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWNKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420419941|ref|ZP_14919028.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4161]
gi|393037177|gb|EJB38213.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4161]
Length = 788
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDASNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|419417877|ref|ZP_13958265.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori NCTC 11637 = CCUG 17874]
gi|384375254|gb|EIE30560.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori NCTC 11637 = CCUG 17874]
Length = 788
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR R+K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLRERVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420487379|ref|ZP_14985983.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-8]
gi|420521162|ref|ZP_15019593.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-8b]
gi|393101956|gb|EJC02522.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-8]
gi|393127749|gb|EJC28194.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-8b]
Length = 788
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+ +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKVAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420447028|ref|ZP_14945922.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-43]
gi|393064001|gb|EJB64841.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-43]
Length = 788
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|384896028|ref|YP_005770017.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori 35A]
gi|315586644|gb|ADU41025.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
pylori 35A]
Length = 788
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL + +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTDLYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYCMQIEYTDGSIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420423669|ref|ZP_14922740.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-4]
gi|393041391|gb|EJB42407.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-4]
Length = 785
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTVPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 477 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|420484030|ref|ZP_14982656.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-3]
gi|420514299|ref|ZP_15012772.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-3b]
gi|393100897|gb|EJC01470.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-3]
gi|393158762|gb|EJC59022.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-3b]
Length = 788
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L ++I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAELQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385226913|ref|YP_005786837.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori SNT49]
gi|344331826|gb|AEN16856.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori SNT49]
Length = 788
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQESNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHCYMQIEYTDGTIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420495971|ref|ZP_14994535.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-23]
gi|393112282|gb|EJC12803.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-23]
Length = 788
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420404714|ref|ZP_14903894.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6271]
gi|393024584|gb|EJB25694.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6271]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W++GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWNKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420431402|ref|ZP_14930421.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-16]
gi|420453509|ref|ZP_14952346.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-8]
gi|420492702|ref|ZP_14991276.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-15]
gi|420526724|ref|ZP_15025125.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-15b]
gi|393048995|gb|EJB49961.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-16]
gi|393069997|gb|EJB70790.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-8]
gi|393107141|gb|EJC07684.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-15]
gi|393132029|gb|EJC32452.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-15b]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420466981|ref|ZP_14965738.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-9]
gi|393085379|gb|EJB86067.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-9]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420501467|ref|ZP_15000011.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-30]
gi|393150273|gb|EJC50581.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-30]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420489162|ref|ZP_14987757.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-11]
gi|420522918|ref|ZP_15021340.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-11b]
gi|393106002|gb|EJC06547.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-11]
gi|393129241|gb|EJC29677.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-11b]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|217032473|ref|ZP_03437965.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
gi|298736377|ref|YP_003728903.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
pylori B8]
gi|216945819|gb|EEC24440.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
gi|298355567|emb|CBI66439.1| ribonucleoside-diphosphate reductase, alpha chain [Helicobacter
pylori B8]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L KI + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385225380|ref|YP_005785305.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori 83]
gi|332673526|gb|AEE70343.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
pylori 83]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEYQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420477576|ref|ZP_14976231.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-23]
gi|393092255|gb|EJB92876.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-23]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++++ WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEEAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y + S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFKNSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420418619|ref|ZP_14917711.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4076]
gi|393033445|gb|EJB34508.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4076]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 318/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIVWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420480713|ref|ZP_14979356.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-1]
gi|420511211|ref|ZP_15009698.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-1b]
gi|393096729|gb|EJB97326.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-1]
gi|393119695|gb|EJC20185.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-1b]
Length = 788
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDMLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|424782351|ref|ZP_18209198.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Campylobacter showae CSUNSWCD]
gi|421959671|gb|EKU11279.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Campylobacter showae CSUNSWCD]
Length = 791
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 306/762 (40%), Positives = 431/762 (56%), Gaps = 117/762 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL +Y + +V G + ++ KG + P L E +NL
Sbjct: 71 PNWTFVAARLFLYDLYHKVTG---------FSGYNHLRDYLQKGEKAGRIIPGLKEKYNL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREK 122
L++ + PERDLQF YLG+K LYDRY + G IE+PQ FM IAM L+ NE + +
Sbjct: 122 DDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQQMFMAIAMFLAQNELDCQG 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+
Sbjct: 182 WAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW +VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYVEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN+G++RRR H++ A+W+ DLFMKRV + + W+LF P +V DL + +G E
Sbjct: 302 DVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSLFDPAEVADLCDLYGDE 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE Y+ YEN K+ K + A LW+KIL+ FE+G P++ FKD N +P H G
Sbjct: 362 FEARYLAYENDEKIQK----NVVMAKELWKKILTSYFESGMPFLCFKDNANKANPNDHDG 417
Query: 363 IIHSSNLCT-----------------------------EITLNTS--------------- 378
II SSNLCT ++T+++
Sbjct: 418 IIRSSNLCTEIFQNTQPNYYKIKITFDNGSERLFDEEEDVTVDSGITKKAKKLSALDSIG 477
Query: 379 ------------KNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY 426
+ + VCNL SINL+ N K D +++ + IA+RMLDNVID+N+Y
Sbjct: 478 GEQIFIVEKESIEGKTAVCNLASINLS--KINKKED---IERVVPIAVRMLDNVIDLNFY 532
Query: 427 AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTEL 486
KK K++NL R +GLG+MG L + + S E + D ME I Y A YAS+ L
Sbjct: 533 PHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENISYNAIYASSNL 592
Query: 487 AEEKGRYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542
A EKG Y ++GS W +G++P D+ K L +RG + + + +W KLR ++KK
Sbjct: 593 AVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDE----NACDWSKLREKVKK 648
Query: 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGL 602
GMRN +AIAPT++IS ++G + +IEP Y+ + NLSG
Sbjct: 649 DGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG------------------ 690
Query: 603 WDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNI 662
MI N+ + + + + Y A+E+ ++ AG++RQKWIDQ QSLNI
Sbjct: 691 ----MIPNV---------VPNLSPETWQFYTPAYELDQRVLVRAGAIRQKWIDQGQSLNI 737
Query: 663 YIS--NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
++S SG L E Y LAW GLK+TYYLRS S + K +N
Sbjct: 738 FMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDSEKLNN 779
>gi|420458518|ref|ZP_14957328.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-26]
gi|393076039|gb|EJB76793.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-26]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|421721289|ref|ZP_16160565.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R055a]
gi|407225050|gb|EKE94823.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R055a]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEGAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420428684|ref|ZP_14927719.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-17]
gi|393046343|gb|EJB47323.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-17]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|308184468|ref|YP_003928601.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori SJM180]
gi|308060388|gb|ADO02284.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori SJM180]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420536419|ref|ZP_15034761.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M3]
gi|393144067|gb|EJC44411.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M3]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420404380|ref|ZP_14903563.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6261]
gi|393018259|gb|EJB19410.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY6261]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +G+ P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGVFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420433950|ref|ZP_14932955.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-24]
gi|420507715|ref|ZP_15006224.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-24b]
gi|420509296|ref|ZP_15007798.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-24c]
gi|420533131|ref|ZP_15031492.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M1]
gi|420534707|ref|ZP_15033055.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M2]
gi|420538122|ref|ZP_15036452.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M4]
gi|420539945|ref|ZP_15038262.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M5]
gi|420543127|ref|ZP_15041421.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M9]
gi|393050365|gb|EJB51325.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-24]
gi|393117568|gb|EJC18069.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-24b]
gi|393120722|gb|EJC21211.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-24c]
gi|393137592|gb|EJC37975.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M1]
gi|393141347|gb|EJC41712.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M2]
gi|393145677|gb|EJC46008.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M4]
gi|393146162|gb|EJC46491.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M5]
gi|393159710|gb|EJC59960.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M9]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420417004|ref|ZP_14916110.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4044]
gi|393035276|gb|EJB36322.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4044]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIDFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420464131|ref|ZP_14962906.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-4]
gi|393078573|gb|EJB79313.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-4]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L KI + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|384889309|ref|YP_005763611.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
pylori v225d]
gi|297379875|gb|ADI34762.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori v225d]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQSLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|384899019|ref|YP_005774398.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F30]
gi|317178962|dbj|BAJ56750.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F30]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420445306|ref|ZP_14944220.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-42]
gi|393063500|gb|EJB64347.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-42]
Length = 785
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFDNAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|421710181|ref|ZP_16149538.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R018c]
gi|421723458|ref|ZP_16162712.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R056a]
gi|407210372|gb|EKE80251.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R018c]
gi|407224481|gb|EKE94257.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R056a]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420438702|ref|ZP_14937676.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-29]
gi|393056302|gb|EJB57214.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-29]
Length = 785
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|420427311|ref|ZP_14926356.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-9]
gi|393042244|gb|EJB43255.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-9]
Length = 785
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTTDFFEEKQLVTTDSNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KKIYISTKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +K+ + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKNVLDRSVECFN 783
>gi|420506512|ref|ZP_15005027.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-74]
gi|393116017|gb|EJC16527.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-74]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIELFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420455223|ref|ZP_14954053.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-14]
gi|393073573|gb|EJB74347.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-14]
Length = 775
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 59 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 110
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 111 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 170
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 171 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 230
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 231 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 290
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 291 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 350
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 351 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 406
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 407 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 466
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 467 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 526
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 527 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 586
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 587 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 638
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 639 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 680
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 681 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 727
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 728 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 773
>gi|420504318|ref|ZP_15002845.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-62]
gi|393154730|gb|EJC55011.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-62]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420395335|ref|ZP_14894562.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY1124]
gi|393013771|gb|EJB14945.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY1124]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSVNLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +G+ P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGVFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|15611688|ref|NP_223339.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori J99]
gi|7388069|sp|Q9ZLF9.1|RIR1_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
AltName: Full=Ribonucleotide reductase
gi|4155174|gb|AAD06201.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQELNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420499791|ref|ZP_14998343.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-26]
gi|393149025|gb|EJC49337.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-26]
Length = 788
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LAEEKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+ +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKVAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|210134885|ref|YP_002301324.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori P12]
gi|210132853|gb|ACJ07844.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
pylori P12]
Length = 788
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDDNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + KKS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDKKSVLDRSVECFN 786
>gi|420541609|ref|ZP_15039917.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M6]
gi|393148229|gb|EJC48553.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp M6]
Length = 785
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|425791015|ref|YP_007018932.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Aklavik86]
gi|425629330|gb|AFX89870.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Aklavik86]
Length = 788
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385215909|ref|YP_005775866.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F32]
gi|317180438|dbj|BAJ58224.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F32]
Length = 788
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +G+ P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGVFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420479245|ref|ZP_14977894.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-34]
gi|393095487|gb|EJB96091.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-34]
Length = 788
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIELFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385229967|ref|YP_005789883.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Puno135]
gi|344336405|gb|AEN18366.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Puno135]
Length = 788
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420422025|ref|ZP_14921103.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4110]
gi|393038543|gb|EJB39577.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4110]
Length = 785
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENTEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 691 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|425789271|ref|YP_007017191.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Aklavik117]
gi|425627586|gb|AFX91054.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Aklavik117]
Length = 788
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|421716767|ref|ZP_16156076.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R037c]
gi|407219988|gb|EKE89799.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R037c]
Length = 788
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNKALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|384892708|ref|YP_005766801.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Cuz20]
gi|308062005|gb|ADO03893.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Cuz20]
Length = 788
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMRIEYTDGTIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420502786|ref|ZP_15001322.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-41]
gi|393150658|gb|EJC50963.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-41]
Length = 788
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVAPNLNVE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|387782327|ref|YP_005793040.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
pylori 51]
gi|261838086|gb|ACX97852.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
pylori 51]
Length = 788
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420412254|ref|ZP_14911383.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4228]
gi|393027912|gb|EJB29000.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4228]
Length = 788
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIVWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|254779335|ref|YP_003057440.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori B38]
gi|254001246|emb|CAX29221.1| Ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori B38]
Length = 788
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENTEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420400271|ref|ZP_14899472.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY3281]
gi|393017216|gb|EJB18369.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY3281]
Length = 788
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF P++ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPFECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIDFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+ +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKVAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|421714933|ref|ZP_16154251.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R036d]
gi|407215787|gb|EKE85625.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R036d]
Length = 788
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420494183|ref|ZP_14992752.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-16]
gi|393110984|gb|EJC11508.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-16]
Length = 788
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYIDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385228400|ref|YP_005788333.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Puno120]
gi|344334838|gb|AEN15282.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Puno120]
Length = 788
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDTMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIDFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420442159|ref|ZP_14941099.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-36]
gi|393058649|gb|EJB59537.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-36]
Length = 788
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y + S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFKNSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420408814|ref|ZP_14907969.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4216]
gi|393022976|gb|EJB24091.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4216]
Length = 785
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHTGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|383749649|ref|YP_005424752.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori ELS37]
gi|380874395|gb|AFF20176.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori ELS37]
Length = 788
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQAIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+ +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKVAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|421719756|ref|ZP_16159040.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R046Wa]
gi|407221079|gb|EKE90884.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R046Wa]
Length = 788
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK----------LDPIKLKKTIR----IAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I +K I+ I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKIAKDGQTAVCNLASINLSKINTEKDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L KI + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420398896|ref|ZP_14898107.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY1962]
gi|393013125|gb|EJB14302.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY1962]
Length = 785
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 700
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 701 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|420468849|ref|ZP_14967578.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-10]
gi|393086260|gb|EJB86938.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-10]
Length = 788
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+ S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHVIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|384897386|ref|YP_005772814.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Lithuania75]
gi|317012491|gb|ADU83099.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Lithuania75]
Length = 788
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYADGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420437092|ref|ZP_14936076.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-28]
gi|393053406|gb|EJB54350.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-28]
Length = 788
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 433/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIDFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I+ +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDINAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420470536|ref|ZP_14969245.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-11]
gi|393085969|gb|EJB86648.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-11]
Length = 788
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + P+RD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNNQIKPKRDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + ISA LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYISAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420460181|ref|ZP_14958980.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-27]
gi|393077283|gb|EJB78032.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp A-27]
Length = 788
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKTNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420396482|ref|ZP_14895701.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY1313]
gi|393013340|gb|EJB14516.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori CPY1313]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +G+ P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGVFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+ +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKVAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|387908019|ref|YP_006338353.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori XZ274]
gi|387572954|gb|AFJ81662.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori XZ274]
Length = 785
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 69 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 120
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+N + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 121 FLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 180
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 181 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 240
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 241 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 300
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 301 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 360
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 361 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 416
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 417 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 476
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 477 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 536
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 537 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 596
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +G+ P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 597 YKDFENSEWSKGVFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 648
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 649 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 691 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 737
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 738 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 783
>gi|385249196|ref|YP_005777415.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F57]
gi|317181991|dbj|BAJ59775.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori F57]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K L+DRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLHDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +G+ P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGVFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I+ +I+A +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDINAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|308182832|ref|YP_003926959.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori PeCan4]
gi|308065017|gb|ADO06909.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori PeCan4]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNYACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|217033693|ref|ZP_03439120.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
gi|216943882|gb|EEC23319.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYCMQIEYTDGTIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +G+ P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGVFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L E W+
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN--- 703
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
Y +A++I +I+ +VRQKWIDQ QS+N++ I
Sbjct: 704 -----------------------FYTSAYDIDAKDLIKVAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|385220499|ref|YP_005781971.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori India7]
gi|317009306|gb|ADU79886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori India7]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|421712991|ref|ZP_16152322.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R32b]
gi|407216357|gb|EKE86194.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R32b]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDVLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L KI + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|188527475|ref|YP_001910162.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi470]
gi|188143715|gb|ACD48132.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi470]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 430/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S +
Sbjct: 420 IRSSNLCTEIFQNTAPNHYRMQIEYTDGAIEFFEEKQLVTTDNNITKCANKLTSTDTLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|386754202|ref|YP_006227420.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi112]
gi|384560460|gb|AFI00927.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Shi112]
Length = 788
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + ++ G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKISGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLN--------------------------TSKNEIGVC--NLGSINL--- 392
I SSNLCTEI N T+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMRIEYTDGTIEFFEEKQLVTTDNHITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKL---------KKTIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K+ + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGRTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
++L++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATSLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|15645304|ref|NP_207474.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori 26695]
gi|410023912|ref|YP_006893165.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Rif1]
gi|410501679|ref|YP_006936206.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Rif2]
gi|410682199|ref|YP_006934601.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori 26695]
gi|419416321|ref|ZP_13956890.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori P79]
gi|2500207|sp|P55982.1|RIR1_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
AltName: Full=Ribonucleotide reductase
gi|2313806|gb|AAD14884.1| ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA)
[Helicobacter pylori 26695]
gi|384375469|gb|EIE30753.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori P79]
gi|409893840|gb|AFV41898.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori 26695]
gi|409895569|gb|AFV43491.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Rif1]
gi|409897230|gb|AFV45084.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Rif2]
Length = 788
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|421711694|ref|ZP_16151037.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R030b]
gi|407212843|gb|EKE82705.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori R030b]
Length = 788
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|255323617|ref|ZP_05364747.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
showae RM3277]
gi|255299331|gb|EET78618.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
showae RM3277]
Length = 791
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 307/757 (40%), Positives = 424/757 (56%), Gaps = 107/757 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL +Y + +V G + ++ KG + P L E ++L
Sbjct: 71 PNWTFVAARLFLYDLYHKVTG---------FSGYNHLRDYLQKGEKAGRVIPGLKEKYDL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREK 122
L++ + PERDLQF YLG+K LYDRY + G IE+PQ FM IAM L+ NE + +
Sbjct: 122 DDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQHMFMAIAMFLAQNELDCQG 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+
Sbjct: 182 WAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW +VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYVEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN+G++RRR H++ A+W+ DLFMKRV + + W+LF P +V DL + +G E
Sbjct: 302 DVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSLFDPAEVADLCDLYGDE 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE YI YEN K+ K + A LW+KIL+ FE+G P++ FKD N +P H G
Sbjct: 362 FEARYIAYENDEKIQK----NVVMAKELWKKILTSYFESGMPFLCFKDNANKANPNDHDG 417
Query: 363 IIHSSNLCTEITLNTSKN------------------------EIGVCNLGSINLTLHMKN 398
II SSNLCTEI NT N + G+ L +
Sbjct: 418 IIRSSNLCTEIFQNTQPNYYKIKITFEGGSEQLFDEEEDVTVDSGITKKAKKLSALDSID 477
Query: 399 GK------------------LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKA 431
GK L I L K + IA+RMLDNVID+N+Y KK
Sbjct: 478 GKQIFIVEKESVEGKTAVCNLASINLSKINKKEDIERVVPIAVRMLDNVIDLNFYPHKKV 537
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K++NL R +GLG+MG L + + S E + D ME I Y A YAS+ LA EKG
Sbjct: 538 KHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENISYNAIYASSNLAVEKG 597
Query: 492 RYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++GS W +G++P D+ K L +RG + + + +W KLR ++KK GMRN
Sbjct: 598 VYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDE----NACDWSKLREKVKKDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG M
Sbjct: 654 GYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------------------M 691
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
I N+ + + + + Y A+E+ ++ AG++RQKWIDQ QSLNI++S
Sbjct: 692 IPNV---------VPNLSPETWQFYTPAYELDQRVLVRAGAIRQKWIDQGQSLNIFMSLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
SG L E Y LAW GLK+TYYLRS S + K +N
Sbjct: 743 KASGGYLSEIYTLAWELGLKSTYYLRSESPDSEKLNN 779
>gi|291303012|ref|YP_003514290.1| ribonucleoside-diphosphate reductase subunit alpha [Stackebrandtia
nassauensis DSM 44728]
gi|290572232|gb|ADD45197.1| ribonucleoside-diphosphate reductase, alpha subunit [Stackebrandtia
nassauensis DSM 44728]
Length = 771
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/704 (40%), Positives = 425/704 (60%), Gaps = 38/704 (5%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +P YS++ ARLL E G E++ D+ FS+ ++ G L++ L E
Sbjct: 64 VATEPGYSRLAARLL-----SEHIGDEVRLSDVGC-----FSEAMSAGYRAGLISDGLWE 113
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRI--EMPQFFFMRIAMGLSL 115
F N L + D +F Y G++ +YDRY L R+ E PQ FFMR+A GLS
Sbjct: 114 FVSSNAPKLDALVDDGADDRFEYFGIRTVYDRYLLRHPETRLVLETPQHFFMRVACGLSE 173
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKE 174
S+ + Y LLS+ +++ S+PTLFN+GT RSQLSSC+L P D+L I++ +
Sbjct: 174 TVSD----VTELYGLLSTLSYLPSSPTLFNAGTRRSQLSSCFLLDSPRDELESIYDRYSQ 229
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
A LSKYAGG+G W+++RS GS I+GTNG S G++P+L+ ++ AVNQGG+RKGA C
Sbjct: 230 AARLSKYAGGIGMAWSRIRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAAC 289
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YL TWH DIEEF+ELR NTG + RRTH++N+A W+PD FM+RV W+LF P DVP+
Sbjct: 290 VYLATWHADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFDPKDVPE 349
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G+EFE++Y E K ++ +SA L+ +++ L +TG+ W+TF D N
Sbjct: 350 LVDLWGEEFEKAYRDAEAAGKAARV-----VSARDLYGRMMRTLAQTGNGWMTFADISNR 404
Query: 355 RSPQQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
Q V ++H SNLCTEI TS E VCNLGS+NL H +G D +L +++R
Sbjct: 405 TCNQTAVPGNVVHLSNLCTEILEVTSDAETAVCNLGSVNLAAHCVDGGFDFERLARSVRT 464
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
A+ LD ID+ YY +A+ +N R RP+GLG+MG D +++P+ S EA + +++
Sbjct: 465 AVTFLDRSIDLTYYPTAEAEKANRRWRPIGLGLMGMADVFFKLRMPFDSAEARELSNRIS 524
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I AY S +LA G + SYD + +G+L D + +++
Sbjct: 525 ETIALAAYETSADLAARLGAHPSYDDTRAARGVLHVD-----------HFADAAVTDPDA 573
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W+++R + G+RNS +AIAPTATI+ I G S EP N+ + LSGEF ++N+Y
Sbjct: 574 WQRVRELVAANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFIQVNKY 633
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
L+ +LK++GLW+E + + +G+++ I+ IP +LR++Y TA+E+ +I+ + R
Sbjct: 634 LIADLKQRGLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLAAGRTP 693
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+IDQSQSLN++++ + KL Y AW GLKTTYYLRS A
Sbjct: 694 FIDQSQSLNLFMAAPTIGKLSSMYAYAWRSGLKTTYYLRSRPAT 737
>gi|384887667|ref|YP_005762178.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori 52]
gi|261839497|gb|ACX99262.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori 52]
Length = 788
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S +
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDTLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRSIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420413679|ref|ZP_14912802.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4099]
gi|393028208|gb|EJB29295.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4099]
Length = 788
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLSVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|420497658|ref|ZP_14996218.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-25]
gi|420528040|ref|ZP_15026432.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-25c]
gi|420529909|ref|ZP_15028294.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-25d]
gi|393113937|gb|EJC14455.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-25]
gi|393133935|gb|EJC34350.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-25c]
gi|393136238|gb|EJC36629.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-25d]
Length = 788
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKCYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S +
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDTLKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|444374102|ref|ZP_21173409.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori A45]
gi|443621326|gb|ELT81765.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori A45]
Length = 788
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + +A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYTNAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK----------LDPIKLKKTIR----IAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I ++ IR I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIRRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKSNGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|108563087|ref|YP_627403.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori HPAG1]
gi|107836860|gb|ABF84729.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
pylori HPAG1]
Length = 788
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIDFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|256391239|ref|YP_003112803.1| ribonucleoside-diphosphate reductase subunit alpha [Catenulispora
acidiphila DSM 44928]
gi|256357465|gb|ACU70962.1| ribonucleoside-diphosphate reductase, alpha subunit [Catenulispora
acidiphila DSM 44928]
Length = 841
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/705 (40%), Positives = 412/705 (58%), Gaps = 41/705 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQID--IPIKYKEYFSKFINKGIDNKLLNPKLAE 60
++P YS++ ARLL I +E G+ + + ++E + + L+ A
Sbjct: 138 EEPQYSKLAARLLSGVIAREAAGQGATSFSASVAVGHREGLIGDVTEA----LITGAAAR 193
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNES 118
F+ A+ P DL+F Y GL+ +YDRY L R IE PQ F +R+A GLS +
Sbjct: 194 FD-----AAIDPAGDLRFEYFGLRTVYDRYLLRHPVTRRVIETPQHFLLRVAAGLSQDPQ 248
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENAL 177
A+ FY L+SS ++ S+PTLFNSGT +Q+SSCYL P D+L I++ + A
Sbjct: 249 E----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCYLVDSPLDELDSIYDRYHQVAR 304
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
LSK+AGG+G +++VRS G+ I+ TNGRS G++PFL+ ++ AVNQGG+RKGA C YL
Sbjct: 305 LSKFAGGIGIGFSRVRSRGALIRSTNGRSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYL 364
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DIEEF++LR NTG+D RRTH++N+A W+PD FM+RV W+L P VP+L +
Sbjct: 365 EPWHPDIEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMDPDQVPELPD 424
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G EF+ +Y E + + +++SA L+ K++ L +TG+ W+TFKDA N
Sbjct: 425 LWGAEFDAAYRKAEAEGRYS-----RQVSARELYGKMMRTLAQTGNGWMTFKDASNQLCN 479
Query: 358 QQHV--GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK--LDPIKLKKTIRIA 413
Q V +H SNLCTEI +S E VCNLGSINL H+ + +D +L+ T+R A
Sbjct: 480 QTGVPGNTVHLSNLCTEIIEVSSDTETAVCNLGSINLAAHLTPARDAVDWDRLRATVRTA 539
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
+ LD VIDINYY ++ SN R RPVGLG+MG QD +++P+ + A + + + E
Sbjct: 540 VVFLDRVIDINYYPSEQTAASNPRWRPVGLGLMGLQDVFFALRLPFDDERARELSTRISE 599
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL-- 531
I A S LAEE G + ++ + +G L D V S L
Sbjct: 600 EIYLTALETSAGLAEEFGAHPAFADTRAAKGDLQPD------------LWNVATSPELAT 647
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W +R R+ G+RNS VAIAPTATI++I G IEP NL + LSGEF +IN
Sbjct: 648 RWNAVRGRVAATGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFLQINS 707
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
LV ELK GLW ++ +K +G++ + +P ++R +Y TA+E+ +I+ + R
Sbjct: 708 ALVGELKALGLWTPAVREAIKRAEGSVQGVEALPAEVRALYRTAWELPQRALIDLAAARG 767
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISAN 696
+IDQSQSLN++++ + KL Y AW GLK+TYYLRS A
Sbjct: 768 PFIDQSQSLNLFLAAPTIGKLSSMYMYAWKAGLKSTYYLRSRPAT 812
>gi|118474247|ref|YP_892927.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
fetus subsp. fetus 82-40]
gi|424819928|ref|ZP_18244966.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
fetus subsp. venerealis NCTC 10354]
gi|118413473|gb|ABK81893.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
fetus subsp. fetus 82-40]
gi|342326707|gb|EGU23191.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
fetus subsp. venerealis NCTC 10354]
Length = 791
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 313/758 (41%), Positives = 423/758 (55%), Gaps = 104/758 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + + G KEYF K G ++L +++L
Sbjct: 71 PNWTFVAARLFLYDLYHKTTGFSGYN-----SLKEYFEKGEKNG---RILLGLKEKYDLE 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERDLQF YLG+K LYDRY + + IE+PQ FM IAM L+ NE + +
Sbjct: 123 DLNAYIKPERDLQFTYLGIKTLYDRYLIKDRNAKPIELPQHMFMAIAMFLAQNELDSQSW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+ G
Sbjct: 183 AKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW +VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +F++LRKN+G++RRR H++ A+W+ DLFMKR+ + WTLF P D PDL + +G EF
Sbjct: 303 VSDFLDLRKNSGEERRRAHELFPALWINDLFMKRLSQNERWTLFDPADTPDLCDLYGDEF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ YI YE + K + K LW+KIL+ FETG P++ FKD N +P H GI
Sbjct: 363 EKRYIEYEKDPHIAKSSMLAK----ELWKKILTNYFETGMPFLCFKDNANRANPNAHKGI 418
Query: 364 IHSSNLCTEITLNTSKNEIG---VCNLGSINL---------------------------- 392
I SSNLCTEI NT N V + GS L
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQTKVVFDDGSFKLFDESEDITVDGGYTKKAKKITALDRLDN 478
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+K GK L I L K + IA+RMLDNVID+N+Y K K
Sbjct: 479 KDIFIVEKGIKEGKTAVCNLASINLSKINSKEDIARVVPIAIRMLDNVIDLNFYPHAKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
++NL R +GLG+MG L I + S E ++F D+ ME I Y A YAS+ LA EKG
Sbjct: 539 HTNLASRSIGLGVMGEAQMLAEKGIIWGSYEHLEFIDEVMENISYNAIYASSNLAVEKGA 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKE---RGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
Y ++GS W +GI P D K RG + + S +W+KLR ++K+ GMRN
Sbjct: 599 YPDFEGSNWSKGIFPIDMANKNAKALINRGGLFDQ----NSCDWEKLRAKVKEGGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG S++
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIP------------------SVVP 696
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
NL + + Y A+E+ II+AG+VRQKWIDQ QSLNI++S
Sbjct: 697 NLN-------------TETWQFYTPAYELDQKLIIKAGAVRQKWIDQGQSLNIFMSLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
SG+ L E Y LAW G+K+TYYLRS S + + N M
Sbjct: 744 SGRYLSEIYTLAWELGVKSTYYLRSESPDSSHLDNKPM 781
>gi|207091868|ref|ZP_03239655.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori HPKX_438_AG0C1]
Length = 733
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 17 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 68
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 69 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 128
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 129 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 188
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 189 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 248
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 249 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 308
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 309 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 364
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 365 IRSSNLCTEIFQNTAPNHYYMQIEYTDGSIEFFEEKQLVTTDSNITKCANKLTSTDILKG 424
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 425 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 484
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 485 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSVNLAKEKGV 544
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 545 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 596
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 597 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 638
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 639 VPNLNAETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 685
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 686 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 731
>gi|420415051|ref|ZP_14914167.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4053]
gi|393034018|gb|EJB35079.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori NQ4053]
Length = 788
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 315/766 (41%), Positives = 431/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDDNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKINGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|408906536|emb|CCM12260.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
[Helicobacter heilmannii ASB1.4]
Length = 786
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 312/765 (40%), Positives = 435/765 (56%), Gaps = 117/765 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL + + ++V G Q +P+K +Y +KG +++ +F+L
Sbjct: 73 PNWSFVAARLFLEDLYEKVSGF---QGYLPLK--KYLELGESKG---RIVRGFKEKFDLD 124
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREKC 123
LL A+ +RDLQFNYLG+K LYDRY L E IE+PQ FM IAM L+ NE + +
Sbjct: 125 LLDKAIEQKRDLQFNYLGIKTLYDRYLLKDEYNHPIELPQHMFMAIAMFLAQNEIHPNEK 184
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T QLSSCY+ + PD++ GIF+S K+ ALLSKY G
Sbjct: 185 ALEFYGVLSRFEMMCATPTLSNARTPNHQLSSCYVGSTPDNIEGIFDSYKDMALLSKYGG 244
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR LGS I G S GVIPFLK+VNDVA+AV+Q G RKGAI YLE WHMD
Sbjct: 245 GIGWDFSQVRCLGSYIDGHKSASAGVIPFLKIVNDVAIAVDQLGTRKGAIAVYLEIWHMD 304
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+W+ DLFM+RV K WTLF PY DL +G F
Sbjct: 305 VLEFIDLRKNSGDERRRAHDLFPALWICDLFMERVEKDEVWTLFDPYVCKDLTECYGDTF 364
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
+E Y+ YE + K +KISA LW++IL+ FE+G P++ FKD N +P H G+
Sbjct: 365 KEKYLSYEQNPHISK----EKISARALWKRILTNYFESGLPFLGFKDNANHANPNGHAGL 420
Query: 364 IHSSNLCTEITLNTS------------------KNEIGVC-------------------- 385
I SSNLCTEI NT + E VC
Sbjct: 421 IRSSNLCTEIYQNTKSSHYKIQVDFKNGERMFFEEEAIVCTDAGIRKKANKLTSNDSLSG 480
Query: 386 ------------------NLGSINLT-LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY 426
NL S+NL+ +H P +++ + IA+RMLDNVID+N+Y
Sbjct: 481 QKIFMATKVPEEGALAVCNLASLNLSKIHT------PEDIERVVPIAVRMLDNVIDLNFY 534
Query: 427 AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTEL 486
KAK +NL+ R +GLG+MG L +I + SKE D ME I Y AS++L
Sbjct: 535 PTAKAKKTNLKSRAIGLGVMGEAQMLAQAQIAWGSKEHATKIDALMEKISYETIKASSDL 594
Query: 487 AEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL-NWKKLRNRIKKFGM 545
A+E+G Y+ ++GS W +GI P D K + L+++ +S+ W +L+ ++++ G+
Sbjct: 595 AKERGSYTCFEGSAWSRGIFPMDRAK-------REALELSSHKSVCAWDRLKAQVQEQGL 647
Query: 546 RNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDE 605
RN +A+APT++IS ++G + +IEP Y+ + NLSG + L
Sbjct: 648 RNGYLMAVAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVVAPEL------------ 695
Query: 606 SMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI- 664
NL D Y +A++I P +I +VRQKWIDQ QSLN+++
Sbjct: 696 ----NL---------------DTWNYYTSAYDIDPKDMIRLAAVRQKWIDQGQSLNLFLR 736
Query: 665 -SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
+GK L E Y LAW GLK+TYYLR+ S + +KS F+ I+
Sbjct: 737 PDKANGKLLHEIYHLAWKLGLKSTYYLRTQSPHLEEKSVFDRSIE 781
>gi|365154441|ref|ZP_09350874.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
sp. 10_1_50]
gi|363650279|gb|EHL89370.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
sp. 10_1_50]
Length = 791
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 306/754 (40%), Positives = 426/754 (56%), Gaps = 107/754 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL ++ + +V G + ++ KG + P L E ++L
Sbjct: 71 PNWTFVAARLFLFDLYHKVTG---------FNGYNHLKDYLAKGEKVGRIIPGLKEKYDL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREK 122
L+ + PERDLQF YLG+K LYDRY + + G+ IE+PQ FM IAM L+ NE + +
Sbjct: 122 EDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMFMAIAMFLAQNELDSQG 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+
Sbjct: 182 WAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW++VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYIEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN+G++RRR H++ A+W+ DLFMKRV + W+LF P V DL + +G+E
Sbjct: 302 DVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSLFDPAQVSDLCDLYGEE 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE+ Y+ YEN + K I A LW+KIL+ FETG P++ FKD N +P H G
Sbjct: 362 FEKRYLEYENDENIQK----NTILAKELWKKILTSYFETGMPFLCFKDNANKANPNDHEG 417
Query: 363 IIHSSNLCTEITLNTSKN--------EIGVCNLGSINLTLHMKNG---------KLDPIK 405
II SSNLCTEI NT+ N E G L + + +G LD +K
Sbjct: 418 IIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDVTVDSGITKKAKKLSALDSLK 477
Query: 406 LKK----------------------------------TIRIAMRMLDNVIDINYYAVKKA 431
K+ + IA+RMLDNVID+N+Y KK
Sbjct: 478 GKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIRMLDNVIDLNFYPHKKV 537
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K++NL R +GLG+MG L + + S E + D ME I Y A YAS+ LA EKG
Sbjct: 538 KHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENISYNAIYASSNLAVEKG 597
Query: 492 RYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++GS W +GI+P D+ K L ++G + + +W KLR ++K+ GMRN
Sbjct: 598 IYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDE----NVCDWDKLREKVKRDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG M
Sbjct: 654 GYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------------------M 691
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
I N+ + + D + Y A+E+ +I+AG++RQKWIDQ QSLNI++S
Sbjct: 692 IPNV---------VPNLSPDTWQFYTPAYELDQRILIKAGAIRQKWIDQGQSLNIFMSLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L E Y LAW GLK+TYYLRS S + K
Sbjct: 743 KASGGYLSEIYTLAWELGLKSTYYLRSESPDSEK 776
>gi|358457764|ref|ZP_09167980.1| ribonucleoside-diphosphate reductase, alpha subunit [Frankia sp.
CN3]
gi|357079044|gb|EHI88487.1| ribonucleoside-diphosphate reductase, alpha subunit [Frankia sp.
CN3]
Length = 837
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 275/703 (39%), Positives = 405/703 (57%), Gaps = 56/703 (7%)
Query: 72 PERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNESNREKCAIKFYN 129
P+ D F Y G++ + DRY L R +E PQ + +R+A GLS + + A + Y
Sbjct: 166 PDADRAFEYFGIRTVADRYLLRHPRTRLVVETPQRWLLRVACGLSHDVAE----AAELYR 221
Query: 130 LLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENALLSKYAGGLGND 188
L++S ++ S+PTLFN+GT Q+SSC+L P D+L I+E + A LSK+AGG+G
Sbjct: 222 LMASLAYLPSSPTLFNAGTAHPQMSSCFLVDSPRDELESIYERYSQVARLSKFAGGIGIG 281
Query: 189 WTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFI 248
+++VRS G+ I+GTNGRS G++P+L+ ++ AVNQGG+RKGA C YLE WH DIEEF+
Sbjct: 282 FSRVRSRGALIRGTNGRSNGIVPWLRTLDASVAAVNQGGRRKGAACVYLEPWHPDIEEFL 341
Query: 249 ELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYI 308
ELR NTG+D RRTH++++A W+PD FM+RV +W+L P +VP+L + +G EF+ +Y
Sbjct: 342 ELRDNTGEDARRTHNLSLAHWIPDEFMRRVRADESWSLMDPDEVPELTDLWGDEFDRAYR 401
Query: 309 LYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ--QHVGIIHS 366
E + +++ A L+ +++ L +TG+ W+TFKDA N Q + +IH
Sbjct: 402 AAETAG-----RYVRQLPARDLYARMMRTLAQTGNGWMTFKDAANRTGNQTAEPGNVIHL 456
Query: 367 SNLCTEITLNTSKNEIGVCNLGSINLTLHM--------------------KNGKLDPIKL 406
SNLCTEI TS E VCNLGS+NL H+ G++D L
Sbjct: 457 SNLCTEILEVTSDAETAVCNLGSVNLARHLLAPRLADGDPSTSSTAPTADPGGRIDWAML 516
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
+ T+R A+ LD VIDINYY +A SN R RPVGLG+MG QD +++P+ S A +
Sbjct: 517 RATVRTAVTFLDRVIDINYYPTGEAAASNPRWRPVGLGVMGLQDVFFALRLPFDSAAARE 576
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
+ + E I A S ELA E G + ++ + +G+L D + V
Sbjct: 577 LSTRLSEEIVLTALERSVELAREHGPHPAFAQTRAARGVLHPD------------HFDVT 624
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
S+ W LR I + G+RN +AIAPTATI++I G IEP N+ + LSGEF
Sbjct: 625 PSQPARWAALRADIVEHGLRNCLLIAIAPTATIASIAGCYECIEPQVSNVFKRETLSGEF 684
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
+IN YLV+EL+ +GLW + ++ +G++ +I +PDDLR ++ TA+E+ +I+
Sbjct: 685 LQINSYLVEELRGRGLWTAPVRERIRAAEGSVQEIGELPDDLRVLFRTAWELPQRALIDL 744
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
+ R +IDQSQSLN+++++ + +L Y AW GLKTTYYLRS A +++
Sbjct: 745 AAARTPYIDQSQSLNLFMADPNIGRLSSMYSYAWSSGLKTTYYLRSRPATRIQQATVTAA 804
Query: 707 IDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
++ E G +E L N EI CE+CQ
Sbjct: 805 THTIPTQETPRDG-----EEAAAVACSLENPEI-----CEACQ 837
>gi|416115616|ref|ZP_11594147.1| Ribonucleotide reductase of class Ia 2C [Campylobacter concisus
UNSWCD]
gi|384577782|gb|EIF07059.1| Ribonucleotide reductase of class Ia 2C [Campylobacter concisus
UNSWCD]
Length = 791
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 306/754 (40%), Positives = 426/754 (56%), Gaps = 107/754 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL ++ + +V G + ++ KG + P L E ++L
Sbjct: 71 PNWTFVAARLFLFDLYHKVTG---------FNGYNHLKDYLAKGEKIGRIIPGLKEKYDL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREK 122
L+ + PERDLQF YLG+K LYDRY + + G+ IE+PQ FM IAM L+ NE + +
Sbjct: 122 EDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMFMAIAMFLAQNELDSQG 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+
Sbjct: 182 WAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW++VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYIEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN+G++RRR H++ A+W+ DLFMKRV + W+LF P V DL + +G+E
Sbjct: 302 DVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSLFDPAQVSDLCDLYGEE 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE+ Y+ YEN + K I A LW+KIL+ FETG P++ FKD N +P H G
Sbjct: 362 FEKRYLEYENDENIQK----NTILAKELWKKILTSYFETGMPFLCFKDNANKANPNDHEG 417
Query: 363 IIHSSNLCTEITLNTSKN--------EIGVCNLGSINLTLHMKNG---------KLDPIK 405
II SSNLCTEI NT+ N E G L + + +G LD +K
Sbjct: 418 IIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDVTVDSGITKKAKKLSALDSLK 477
Query: 406 LKK----------------------------------TIRIAMRMLDNVIDINYYAVKKA 431
K+ + IA+RMLDNVID+N+Y KK
Sbjct: 478 GKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIRMLDNVIDLNFYPHKKV 537
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K++NL R +GLG+MG L + + S E + D ME I Y A YAS+ LA EKG
Sbjct: 538 KHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENISYNAIYASSNLAVEKG 597
Query: 492 RYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++GS W +GI+P D+ K L ++G + + +W KLR ++K+ GMRN
Sbjct: 598 IYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDE----NVCDWDKLREKVKRDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG M
Sbjct: 654 GYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------------------M 691
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
I N+ + + D + Y A+E+ +I+AG++RQKWIDQ QSLNI++S
Sbjct: 692 IPNV---------VPNLSPDTWQFYTPAYELDQRILIKAGAIRQKWIDQGQSLNIFMSLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L E Y LAW GLK+TYYLRS S + K
Sbjct: 743 KASGGYLSEIYTLAWELGLKSTYYLRSESPDSEK 776
>gi|386839867|ref|YP_006244925.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374100168|gb|AEY89052.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451793161|gb|AGF63210.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 698
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 279/671 (41%), Positives = 403/671 (60%), Gaps = 32/671 (4%)
Query: 41 FSKFINKGIDNKLLNPKLAEFNLS-------LLSNALLPERDLQFNYLGLKILYDRYFLH 93
F++ I G L+ AEF + L+ +A+ D +F Y GL+ LY RY L
Sbjct: 9 FTESIALGRREGLIADGTAEFVRTHAERLDALVESAVAEGADDRFGYFGLRTLYSRYLLR 68
Query: 94 IEGIR--IEMPQFFFMRIAMGLSLNESNREKCAIK-FYNLLSSFNFMCSTPTLFNSGTIR 150
R IE PQ F +R+A GL+ ++++R + Y L+S +++ S+PTLFNSGT
Sbjct: 69 HPVTRKVIETPQHFLLRVASGLAEDDTSRSVDEVAALYGLMSRLDYLPSSPTLFNSGTPH 128
Query: 151 SQLSSCYLSTVP-DDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGV 209
Q+S+CYL P D+L I++ + A LSK+AGG+G ++++RS GS I+GTNG S G+
Sbjct: 129 PQMSACYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGI 188
Query: 210 IPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIW 269
+PFLK ++ AVNQGG+RKGA YLETWH DIEEF+ELR NTG+D RRTH++N+A W
Sbjct: 189 VPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHW 248
Query: 270 VPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALY 329
+PD FM+RV W+LFSP DVP+L + +G++F+ +Y E L K K I+A
Sbjct: 249 IPDEFMRRVNADEQWSLFSPADVPELVDLWGEDFDAAYRKAE-AAGLAK----KTIAARD 303
Query: 330 LWRKILSMLFETGHPWITFKDACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNL 387
L+ +++ L +TG+ W+TFKDA N + Q + ++HSSNLCTEI T+ E VCNL
Sbjct: 304 LYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGNVVHSSNLCTEILEVTNDGETAVCNL 363
Query: 388 GSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGI 445
GS+NL + +G +D +L +T+R A+ LD V+DIN+Y ++A SN + RPVGLG
Sbjct: 364 GSVNLGAFVDAASGDIDWERLDQTVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGA 423
Query: 446 MGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGI 505
MG QD +++P+ S EA + + E I AY S +LAE G ++D + +G+
Sbjct: 424 MGLQDVFFKLRLPFDSAEAKALSTRIAERIMLAAYETSADLAERNGPLPAWDQTRAARGV 483
Query: 506 LPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGV 565
L D + V + W LR R+ GMRN+ +AIAPT+TI++I GV
Sbjct: 484 LHPD------------HYDVQFTWPERWAALRERVAAVGMRNALMLAIAPTSTIASIAGV 531
Query: 566 SASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIP 625
IEP NL + LSGEF ++N YLV++LK G+WD L+ +G++ IP
Sbjct: 532 YECIEPQVSNLFKRETLSGEFLQVNSYLVQDLKNLGVWDARTREALRDSNGSIQDFPWIP 591
Query: 626 DDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLK 685
++ R +Y TA+EI +I+ + R ++DQ QSLN+++ + KL Y AW GLK
Sbjct: 592 EETRALYRTAWEIPQRGLIDMAAARTPYLDQGQSLNLFMETPTIGKLSSMYAYAWKSGLK 651
Query: 686 TTYYLRSISAN 696
TTYYLRS A
Sbjct: 652 TTYYLRSRPAT 662
>gi|157165034|ref|YP_001467815.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
concisus 13826]
gi|112801827|gb|EAT99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
concisus 13826]
Length = 791
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 305/754 (40%), Positives = 425/754 (56%), Gaps = 107/754 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL ++ + +V G + ++ KG + P L E ++L
Sbjct: 71 PNWTFVAARLFLFDLYHKVTG---------FNGYNHLKDYLAKGEKVGRIIPGLKEKYDL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREK 122
L+ + PERDLQF YLG+K LYDRY + + G+ IE+PQ FM IAM L+ NE + +
Sbjct: 122 EDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMFMAIAMFLAQNELDSQG 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+
Sbjct: 182 WAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW++VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYIEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN+G++RRR H++ A+W+ DLFMKRV + W+LF P V DL + +G+E
Sbjct: 302 DVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSLFDPAQVSDLCDLYGEE 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE+ Y+ YEN + K I A LW+KIL+ FETG P++ FKD N +P H G
Sbjct: 362 FEKRYLEYENDESIQK----NTILAKELWKKILTSYFETGMPFLCFKDNANKANPNDHDG 417
Query: 363 IIHSSNLCTEITLNTSKN--------EIGVCNLGSINLTLHMKNG---------KLDPIK 405
II SSNLCTEI NT+ N E G L + + +G LD +K
Sbjct: 418 IIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDITVDSGITKKAKKLSALDSLK 477
Query: 406 LKK----------------------------------TIRIAMRMLDNVIDINYYAVKKA 431
K+ + IA+RMLDNVID+N+Y KK
Sbjct: 478 GKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIRMLDNVIDLNFYPHKKV 537
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K++NL R +GLG+MG L + + S E + D ME I Y A Y S+ LA EKG
Sbjct: 538 KHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENISYNAIYTSSNLAVEKG 597
Query: 492 RYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++GS W +GI+P D+ K L ++G + + +W KLR ++K+ GMRN
Sbjct: 598 IYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDE----NVCDWDKLREKVKRDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG M
Sbjct: 654 GYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------------------M 691
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
I N+ + + D + Y A+E+ +I+AG++RQKWIDQ QSLNI++S
Sbjct: 692 IPNV---------VPNLSPDTWQFYTPAYELDQRILIKAGAIRQKWIDQGQSLNIFMSLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L E Y LAW GLK+TYYLRS S + K
Sbjct: 743 KASGGYLSEIYTLAWELGLKSTYYLRSESPDSEK 776
>gi|322379521|ref|ZP_08053886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
suis HS1]
gi|322380284|ref|ZP_08054500.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
suis HS5]
gi|321147267|gb|EFX41951.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
suis HS5]
gi|321148076|gb|EFX42611.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
suis HS1]
Length = 798
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 311/751 (41%), Positives = 423/751 (56%), Gaps = 113/751 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL + + ++V G +P++ Y + +KG +++ +F+L
Sbjct: 85 PNWSFVAARLFLEDLYQKVSGFSGY---LPLRV--YLERGESKG---RIVRGFKEKFDLE 136
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
LL +AL PERD QFNYLG+K LYDRY L E IE+PQ FM IAM L+ NES+
Sbjct: 137 LLDSALKPERDWQFNYLGIKTLYDRYLLKDESNHPIELPQHMFMAIAMFLAQNESDPNAR 196
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T QLSSCY+ + PD++ GIF+S K+ ALLSKY G
Sbjct: 197 ALEFYGVLSRFELMCATPTLANARTPNHQLSSCYIGSTPDNIEGIFDSYKDMALLSKYGG 256
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR LGS I G S GVIPFLK+ NDVAVAV+Q G RKGAI YLE WHMD
Sbjct: 257 GIGWDFSQVRCLGSFIDGHKSASAGVIPFLKIANDVAVAVDQLGTRKGAIAVYLEIWHMD 316
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I EFI+LRKN+GD+RRR HD+ A+W+ DLFM+RV WTLF PY DL FG EF
Sbjct: 317 ILEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEADQEWTLFDPYRCQDLTQCFGAEF 376
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y+ YE + + K +I A LW+KIL+ FETG P++ FKD N +P HVG+
Sbjct: 377 EAKYLAYEQDSHMVK----HRIKARDLWKKILTNYFETGLPFLGFKDNANRANPNGHVGM 432
Query: 364 IHSSNL---------------------------------CTEITLNTSKNE--------- 381
I SSNL CT+ + N+
Sbjct: 433 IRSSNLCTEIYQNTSSSHYKMQIDFTDGSREFFEELEEVCTDTGITKRANKLSSNDSLGG 492
Query: 382 --------------IGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYA 427
+ VCNL S+NL+ N + D L++ + IA+RMLDNVID+N+Y
Sbjct: 493 KKIFMASKVAEEGMVAVCNLASLNLS--KINSQQD---LERVVPIAVRMLDNVIDLNFYP 547
Query: 428 VKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELA 487
+ KAK +NL+ R +GLG+MG L +I + S E D +E + Y A AS++LA
Sbjct: 548 ISKAKETNLKSRAIGLGVMGEAQMLAEARIKWGSAEHALKMDFLLEKMSYEAIKASSQLA 607
Query: 488 EEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
E+G Y+ ++GS W QGI P D +K KE + + WK L+ ++K+ G+RN
Sbjct: 608 IERGSYAYFEGSAWSQGIFPIDYIKQEVKEISPHKPRCD------WKSLKKKVKEQGLRN 661
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ ++ NLSG + L E W
Sbjct: 662 GYLMAIAPTSSISILVGTTQTIEPIYQKKWLEENLSGLIPVVVPSLSLET-----W---- 712
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNK 667
Y +A++I +I+ +VRQKWIDQ QSLN+++ K
Sbjct: 713 ----------------------PFYTSAYDIDAKDMIKLAAVRQKWIDQGQSLNLFLRPK 750
Query: 668 --SGKKLDETYKLAWLRGLKTTYYLRSISAN 696
SGK L E Y LAW GLK+TYYLR+ S +
Sbjct: 751 KASGKLLHEIYYLAWKLGLKSTYYLRTQSPD 781
>gi|329939693|ref|ZP_08288994.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
griseoaurantiacus M045]
gi|329301263|gb|EGG45158.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
griseoaurantiacus M045]
Length = 811
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/723 (38%), Positives = 412/723 (56%), Gaps = 59/723 (8%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ +DP +S++ ARLL I+ E + + F+ + G L+ + A
Sbjct: 73 ISEDPAHSRLAARLLTLTIRAEAASQGVTS----------FTSSVATGHREGLVADRTAA 122
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSL 115
F + + L + P+ D +F Y GL+ L+ RY L R IE PQ F +R+A GL+
Sbjct: 123 FVRRHAARLDALVDPDADDRFGYFGLRTLHTRYLLRHPVTRKVIETPQHFLLRVASGLA- 181
Query: 116 NESNREKCAI--------KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LY 166
E++R + L+S ++ S+PTLFNSGT Q+SSC+L P+D L
Sbjct: 182 EEADRAGAGADRAVEEVAALHGLMSRLEYLPSSPTLFNSGTRHPQMSSCFLLDSPEDELD 241
Query: 167 GIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQG 226
I+ + A LSK+AGG+G ++++RS G+ I+GTNG S G++PFLK ++ AVNQG
Sbjct: 242 SIYSRYHQVARLSKHAGGIGLAYSRIRSRGALIRGTNGHSGGIVPFLKTLDASVAAVNQG 301
Query: 227 GKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTL 286
G+RKGA YLETWH DIEEF+ELR NTG+D RRTH++N+A W+PD FM+RV + W+L
Sbjct: 302 GRRKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSL 361
Query: 287 FSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWI 346
FSP DVP L + +G EF+ +Y E + + + A L+ +++ L TG W+
Sbjct: 362 FSPSDVPGLTDLWGAEFDAAYRAAEAEG-----LAVRTLPARELYGRMMRTLASTGTGWM 416
Query: 347 TFKDACNIRSPQ--QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----- 399
TFKD N + Q + +IHSSNLCTEI T E VCNLGSINL ++ G
Sbjct: 417 TFKDTANRTANQTAEPGNVIHSSNLCTEILEVTEDGETAVCNLGSINLGAFVREGNTADA 476
Query: 400 ----------KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQ 449
+D +L T+R A+ LD VID+N+Y ++A SN R RPVGLG+MG Q
Sbjct: 477 GTADAGAADGGIDWERLDATVRTAVTFLDRVIDLNFYPTEEAGRSNARWRPVGLGVMGLQ 536
Query: 450 DCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
D L +++P+ S EA + + E + AY S ELA G +++ + +G+L D
Sbjct: 537 DVLFRLRLPFDSPEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTARGVLHPD 596
Query: 510 SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASI 569
+ V +S W LR RI GMRN+ +AIAPTATI++I GV +
Sbjct: 597 ------------HYDVELSWPERWAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECV 644
Query: 570 EPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLR 629
EP NL + LSGEF ++N YLV +LK+ G WD L+ +G++ ++ +P+++R
Sbjct: 645 EPQVSNLFKRETLSGEFLQVNPYLVADLKRLGRWDADTREALREANGSVEGLTWLPEEVR 704
Query: 630 KIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYY 689
++Y TA+E+ +I+ + R ++DQ+QSLN+++ + KL Y AW GLKTTYY
Sbjct: 705 RLYRTAWELPQRALIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYY 764
Query: 690 LRS 692
LRS
Sbjct: 765 LRS 767
>gi|152993944|ref|YP_001359665.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp.
NBC37-1]
gi|151425805|dbj|BAF73308.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurovum sp.
NBC37-1]
Length = 789
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 303/749 (40%), Positives = 428/749 (57%), Gaps = 108/749 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y I + G +EYF + +G +++ +++L
Sbjct: 72 PNWTFVAARLFLYDIYHKATGFTGYN-----HLREYFERGEKEG---RIVLGLKDKYDLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERDLQFNYLGL+ LYDRY L G+ IE+PQ FM +AM L+ NE + +
Sbjct: 124 DLNDYIKPERDLQFNYLGLRTLYDRYLLKDRNGVPIELPQQLFMGVAMFLAQNEFDCQTW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY++LS F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSK+ G
Sbjct: 184 AKKFYDILSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDGYKEMALLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DWT VR +GS I G + G++PFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDWTLVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLGTRKGAIAVYLEPWHVD 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +F++L+KN+G++RRR HD+ A+W+ DLFMKRV + +TWTLF P++V +L +G+EF
Sbjct: 304 VRDFLDLKKNSGEERRRAHDLFPALWLNDLFMKRVEEDATWTLFDPFEVTELTELYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ E+ ++ ISA LW++IL FETG+P++TFKDA N +P +HVGI
Sbjct: 364 EKRYVELEHSDADITREV---ISAKGLWKEILRSYFETGNPFLTFKDAANRANPNKHVGI 420
Query: 364 IHSSNLCTEITLNTSKNEIG---VCNLGSI-----NLTLHMKNGKLDPIK---------- 405
I SSNLCTEI NT+ N GSI N L + NG P K
Sbjct: 421 IRSSNLCTEIFQNTAPNTYKTRFTFTDGSIESYDENEMLTVDNGTTKPAKKVTALDSLGG 480
Query: 406 ---------------------------------LKKTIRIAMRMLDNVIDINYYAVKKAK 432
+ + + A+RMLDNVID+N+Y + K K
Sbjct: 481 KQIWIVDKEKIDGDTAVCNLASINLSKIHTKEDIARVVPTAVRMLDNVIDLNFYPLAKVK 540
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N + R +GLG+MG L +I + S + D+ ME + YYA AS+ LA EKG+
Sbjct: 541 RTNEKSRSIGLGVMGEAQMLAENQIAWGSHDHFTKIDEVMESVSYYAIEASSNLALEKGK 600
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++DGS W +GI P D + KL+ +RG + S +W LR ++K GMRN
Sbjct: 601 YPTFDGSDWSKGIFPIDKANENACKLV--DRGGLF-----GYSHDWTALREKVKTDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+A+APT++IS + G + +IEP Y+ + NLSG L+ K
Sbjct: 654 GYLMAVAPTSSISILTGTTQAIEPVYKRKWFEENLSG--------LIPVTAPK------- 698
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
+ D + Y A+++ N +I+AG++RQKWIDQ QSLNI+I+
Sbjct: 699 ----------------LSPDTWQYYTPAYDLDQNVLIKAGAIRQKWIDQGQSLNIFITLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
SGK L+E Y AW GLK+TYYLRS S
Sbjct: 743 KASGKYLNEIYMNAWKFGLKSTYYLRSQS 771
>gi|34558071|ref|NP_907886.1| ribonucleotide-diphosphate reductase subunit alpha [Wolinella
succinogenes DSM 1740]
gi|34483789|emb|CAE10786.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN [Wolinella
succinogenes]
Length = 788
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 306/755 (40%), Positives = 427/755 (56%), Gaps = 121/755 (16%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + +V + K K+YF + ++G +++ +F+L
Sbjct: 72 PEWTYVAARLFLYDLYHKV-----NRFTGYGKLKDYFERGESEG---RIIKGLRGKFDLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L ++PERDLQFNYLG+K LYDRY + + IE+PQ FM IAM L+ NE +
Sbjct: 124 FLDTKIVPERDLQFNYLGIKTLYDRYLIKDRSNKPIELPQHMFMSIAMFLAQNEREPNEW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A+KFY+LLS F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSKY G
Sbjct: 184 AVKFYDLLSRFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDGYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D+++VR LGS I G + GV+PFLK+ NDVA+AV+Q G RKGAI YLE WH D
Sbjct: 244 GIGWDYSKVRGLGSYIDGHKNAAGGVVPFLKITNDVAIAVDQLGTRKGAISVYLEPWHTD 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+L+KN+G++RRR HD+ A+W+PDLFMKRV + WTL P++ DL N G+ F
Sbjct: 304 IFDFIDLKKNSGEERRRAHDLFPALWIPDLFMKRVEEDGAWTLLDPHECQDLTNLHGEAF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE G IK + I A LW+K+L+ FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYECME--GIIK--ETIRAKELWKKVLTSYFEIGSPFLCFKDNANRLNPNAHKGI 419
Query: 364 IHSSNLCTE-----------------------------ITLNTS---------------- 378
I SSNLCTE IT +T
Sbjct: 420 IRSSNLCTEIFQNTEPNHYLIQVEYEDGSSERFEEHAIITTDTGVEKRANKITSMDSLQG 479
Query: 379 -----------KNEIGVCNLGSINLT-LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY 426
+ + VCNL SINL+ +H + +++ + IA+RMLDNVID+N+Y
Sbjct: 480 KKVFIAERIAQEGKTAVCNLASINLSKIHTQE------DIERVVPIAVRMLDNVIDLNFY 533
Query: 427 AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTEL 486
KK K +NL R +GLG+MG L KI + S+E ++ D+ ME + Y+A AS+ L
Sbjct: 534 PNKKVKRTNLETRAIGLGVMGEAQMLAESKIVWGSQEHLERIDEIMEQVSYHAIKASSTL 593
Query: 487 AEEKGRYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIK 541
A+EKG Y ++GS W +GI P D + KL+ +RG + +W LR ++K
Sbjct: 594 AKEKGIYPDFEGSNWSKGIFPIDLANSEAKKLV--DRGGLF-----GTDCDWDSLREQVK 646
Query: 542 KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKG 601
+ GMRN +AIAPT++IS ++G + +IEP Y+ + NLSG + L E
Sbjct: 647 RDGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE----- 701
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLN 661
W+ Y +A+++ N +I+A S+RQKWIDQ QS N
Sbjct: 702 TWN--------------------------FYQSAYDLDQNLLIKAASIRQKWIDQGQSTN 735
Query: 662 IYIS--NKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
I+IS SGK L++ Y AW GLK+TYYLRS S
Sbjct: 736 IFISLDKASGKYLNDIYVNAWKLGLKSTYYLRSQS 770
>gi|384170894|ref|YP_005552271.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter sp.
L]
gi|345470504|dbj|BAK71954.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter sp.
L]
Length = 794
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/747 (40%), Positives = 417/747 (55%), Gaps = 100/747 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEY--FSKFINKGIDNKLLNPKLAE-F 61
P ++ V ARL ++ + V GK + IK + Y ++ G + L P L E +
Sbjct: 73 PNWTFVAARLFVFDLYHRV-GK----VTHGIKGEPYCHLRDYLRYGKEAGRLIPSLGEGY 127
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNR 120
+L L+ + PERD FNYLG+K LYDRY + IE+PQ FM IAM L+ +E N+
Sbjct: 128 DLEDLNAYIKPERDFLFNYLGIKTLYDRYLIKNRNAEPIELPQQMFMAIAMFLAQDEKNK 187
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
++CA +FY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSK
Sbjct: 188 QQCAKQFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMALLSK 247
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
Y GG+G DW Q+R+LG I + G +PFLK+ ND+A+AV+Q G RKGAI Y+E W
Sbjct: 248 YGGGIGWDWNQIRALGGVIDDHKSAAGGTVPFLKITNDIAIAVDQLGTRKGAIAVYMEPW 307
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDI +F++L+KN+G++RRR HD+ A+W+ DLFM+RV++ S WTLF PY+V DL +G
Sbjct: 308 HMDIVDFVDLKKNSGEERRRAHDLFPALWITDLFMERVLEDSHWTLFDPYEVKDLSECYG 367
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EF+ YI YEN + K ++ A LW+KIL+ FE G P++ FKD N +P H
Sbjct: 368 DEFKAKYIAYENDESITK----DRMKAKDLWKKILTSYFEVGSPFLCFKDNANRANPNSH 423
Query: 361 VGIIHSSNLCTEITLNTSKN------------------------EIGVCNLGSINLTLHM 396
VG I SSNLCTEI NT+ N + G+ + L
Sbjct: 424 VGHIRSSNLCTEIFQNTNPNYYKIRLEFVDGSVQTFDEEDLVLVDGGITKKANKVSALDS 483
Query: 397 KNGK-----------------------LDPIKLKKTIR----IAMRMLDNVIDINYYAVK 429
NGK L I K+ I IA+RMLDNVID+N+Y +K
Sbjct: 484 INGKRVFIVEKEKIDGDTAVCNLASVNLSRINTKEDIERVVPIAIRMLDNVIDLNFYPLK 543
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
K K +NL+ R +GLG+MG + L K+ + S E K DQ ME I Y A +S++LA E
Sbjct: 544 KVKVTNLKSRSIGLGVMGEAEMLAEYKLAWGSNEHFKKIDQVMEAISYNAIKSSSDLAIE 603
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
KG Y +++GS W GI+P D K L S +W LR ++KK GMRN
Sbjct: 604 KGIYPTFEGSKWSLGIMPHDHAPQAVNALVDKDL---FDTSYDWDVLREKVKKDGMRNGY 660
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+A+APT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 661 LMAVAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV-------------------- 700
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
+ ++ + Y AFEI +I+A ++RQKWIDQ QS NI++S
Sbjct: 701 -----------VPKLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLDKA 749
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSIS 694
SGK L E Y LAW GLK+TYYLRS S
Sbjct: 750 SGKYLHEIYTLAWKLGLKSTYYLRSQS 776
>gi|315635422|ref|ZP_07890688.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
butzleri JV22]
gi|315480180|gb|EFU70847.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
butzleri JV22]
Length = 794
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 299/745 (40%), Positives = 417/745 (55%), Gaps = 96/745 (12%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL ++ + V I + + + +I GI+ L P +A+ ++L
Sbjct: 73 PNWTFVAARLFLFDLYHRV---GIATHGVKGEAYCHLKDYIKFGIEAGRLIPSIADGYDL 129
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
L++ + P RDL FNYLG+K LYDRY + + + IE+PQ FM IAM L+ NE +++
Sbjct: 130 DELNSYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQMFMAIAMFLAQNEKDKQS 189
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A +FY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSKY
Sbjct: 190 KAKEFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMALLSKYG 249
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW Q+RSLG I + G +PFLK+ ND+A+AV+Q G RKGAI YLE WHM
Sbjct: 250 GGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQLGTRKGAIAVYLEPWHM 309
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +F++L+KN+G++RRR HD+ A+W+ DLFM+RV++ S WTLF PY+V DL FG E
Sbjct: 310 DIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWTLFDPYEVRDLSETFGDE 369
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
F+ YI YEN + K ++ A LW+KIL+ FE G P++ +KD N +P HVG
Sbjct: 370 FKAKYIAYENDETITK----DRMKAKDLWKKILTSYFEVGSPFLCWKDTANRTNPNSHVG 425
Query: 363 IIHSSNLCTEITLNTSKNEI------------------------GVCNLGSINLTLHMKN 398
I SSNLCTEI NT+ N GV + L N
Sbjct: 426 HIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVDGGVTKKANKVSALDSVN 485
Query: 399 GK------------------LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKA 431
GK L I L K + A+RMLDNVID+N+Y ++K
Sbjct: 486 GKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAIRMLDNVIDLNFYPLRKV 545
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL+ R +GLG+MG + L ++ + S E K DQ ME I Y +S++LA EKG
Sbjct: 546 KATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEAISYNTIKSSSDLASEKG 605
Query: 492 RYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCV 551
Y +++GS W +GI+P D L + + K S +W LR ++KK GMRN +
Sbjct: 606 VYPTFEGSKWSKGIMPHD---LAPQAVNALVDKDLFDTSYDWDVLREKVKKDGMRNGYLM 662
Query: 552 AIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANL 611
AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 663 AIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV---------------------- 700
Query: 612 KYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSG 669
+ R+ + Y AFEI +I+A ++RQKWIDQ QS NI++S SG
Sbjct: 701 ---------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLDKASG 751
Query: 670 KKLDETYKLAWLRGLKTTYYLRSIS 694
K L E Y LAW GLK+TYYLRS S
Sbjct: 752 KYLHEIYTLAWKLGLKSTYYLRSQS 776
>gi|386826454|ref|ZP_10113561.1| ribonucleotide reductase, alpha subunit [Beggiatoa alba B18LD]
gi|386427338|gb|EIJ41166.1| ribonucleotide reductase, alpha subunit [Beggiatoa alba B18LD]
Length = 1313
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 234/376 (62%), Positives = 297/376 (78%), Gaps = 6/376 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+EK+P Y+ V +RLL+ ++ E + ++ Y +YF +I+KGI +LL
Sbjct: 209 VEKEPNYTYVASRLLLDNLRTEALSLLKFEPHTVTATEMRNYYADYFKHYIHKGIALELL 268
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
NP LA+FNL L AL+ + DLQF YLGL+ LYDRYFLH + R E+PQ FFMR+AMGL+
Sbjct: 269 NPSLADFNLDRLGMALIADNDLQFTYLGLQTLYDRYFLHSQDTRFELPQAFFMRVAMGLA 328
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+NE RE+ AI+FY LLSSF+FM STPTLFNSGT+RSQLSSC++STVPDDL GIF +IK+
Sbjct: 329 INEIQREERAIEFYKLLSSFDFMSSTPTLFNSGTLRSQLSSCFVSTVPDDLDGIFGAIKD 388
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NA++ K+AGG+GNDWT VR +G+ IKGTNG+SQGV+PFLKV ND V+VNQGGKRKG+ C
Sbjct: 389 NAMMQKWAGGIGNDWTPVRGMGARIKGTNGKSQGVVPFLKVANDTLVSVNQGGKRKGSGC 448
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF+ELRKNTGD+RRRTHDMN A W+PDLFM+RV++ W+LFSP + PD
Sbjct: 449 AYLETWHIDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMQRVMENGHWSLFSPDETPD 508
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH + F+ +Y YE + GK+K+FK++SA+ LWRK+L+MLFETGHPWI FKD CNI
Sbjct: 509 LHELHSEAFKTAYEAYEALAEQGKLKIFKRVSAVELWRKMLTMLFETGHPWICFKDPCNI 568
Query: 355 RSPQQHVGIIHSSNLC 370
RSPQQHVG++HSSNLC
Sbjct: 569 RSPQQHVGVVHSSNLC 584
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/379 (58%), Positives = 295/379 (77%), Gaps = 15/379 (3%)
Query: 371 TEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKK 430
TEITLNTS+ EI VCNLGS+NL H+ N +LD KL++T++ AMRMLDNVIDINYYAV +
Sbjct: 950 TEITLNTSRYEIAVCNLGSVNLARHINNNRLDVEKLQRTVKTAMRMLDNVIDINYYAVPQ 1009
Query: 431 AKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEK 490
A+ +NLRHRP+GLGIMGFQD L+ ++IPYS+ +A++FAD+SME + Y+A STELA E+
Sbjct: 1010 ARTANLRHRPIGLGIMGFQDALYQLRIPYSTDKAVEFADESMEYLSYFAIEGSTELAVER 1069
Query: 491 GRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNC 550
G+YS++ GSLW QGILP DS++ L RG +YL+++ S SL+W+KLR ++K+ GMRNSNC
Sbjct: 1070 GKYSTFLGSLWSQGILPIDSIQALRGTRG-QYLEMSDSSSLDWEKLREKVKRDGMRNSNC 1128
Query: 551 VAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIAN 610
+AIAPTATISNI+GV+ SIEPTY+NL +KSNLSGEFT +N YLV++LK LWD+ M+ +
Sbjct: 1129 MAIAPTATISNIVGVTQSIEPTYQNLFVKSNLSGEFTVVNPYLVRDLKTLNLWDDVMVND 1188
Query: 611 LKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGK 670
LKYFDG++ I R+P++L+ +YATAFE+ P+W+IEAGS RQKWIDQSQSLN+Y+ SG+
Sbjct: 1189 LKYFDGSVQNIDRVPNELKALYATAFEVDPSWLIEAGSRRQKWIDQSQSLNLYLLEPSGR 1248
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNN 730
KLD YKLAW+RGLKTTYYLR++ A + +K ++V + +I + EI
Sbjct: 1249 KLDLLYKLAWIRGLKTTYYLRTMGATHVEK-------NTVRSSKNAIVEQQDDDNEIP-- 1299
Query: 731 KKCLINSEINDVNECESCQ 749
K CLI D +CE+CQ
Sbjct: 1300 KACLI-----DDPDCEACQ 1313
>gi|291276994|ref|YP_003516766.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
mustelae 12198]
gi|290964188|emb|CBG40033.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
mustelae 12198]
Length = 789
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 311/756 (41%), Positives = 425/756 (56%), Gaps = 122/756 (16%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + +V G + +EYF K +G K++ +F+L
Sbjct: 72 PNWTFVAARLFLYDLYHKVSGFTGYR-----SLREYFEKGEQEG---KIVKGLKEKFDLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERDLQFN+LG+K LYDRY L + IE+PQ FM IAM L+ NE +
Sbjct: 124 FLNAQIKPERDLQFNFLGVKTLYDRYLLKDRQNKPIELPQHMFMAIAMFLAQNEKDPNAY 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY+++S F + +TPTL N+ T R QLSSCY+ + PD++ GIF++ KE ALLSKY G
Sbjct: 184 ALQFYDVISKFEVITATPTLANARTPRHQLSSCYIGSTPDNIEGIFDAYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D+++VR LGS I G + GV+PFLK+ NDVA+AV+Q G RKGAI YLE WH D
Sbjct: 244 GIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKITNDVAIAVDQLGTRKGAIATYLEIWHTD 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
++EFI+LRKN+G++RRRTHD+ A+W+ DLFMKRV + WTLF PY L +G+EF
Sbjct: 304 VQEFIDLRKNSGEERRRTHDLFPALWICDLFMKRVEENGLWTLFDPYQCGILTELYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
EE Y+ +E + + K + I A LW+KIL+ FETG P++ FKD N +P H GI
Sbjct: 364 EEKYLEFEKRQDIIK----EHIHAKELWKKILTNYFETGMPFLCFKDNANKANPNPHTGI 419
Query: 364 IHSSNLCTEITLN---------------------------------------TSKNEIG- 383
I SSNLCTEI N TS + IG
Sbjct: 420 IRSSNLCTEIFQNTSANHYFIEVEFEDSSKQYFEEQELVLTDAGIEKKANKITSLDCIGG 479
Query: 384 ----------------VCNLGSINLT-LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY 426
VCNL SINL+ +H K + + + IA+RMLDNVI++N+Y
Sbjct: 480 KKVYITSRVHKDGNTAVCNLASINLSRIHTKE------DIDRIVPIAIRMLDNVIELNFY 533
Query: 427 AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTEL 486
+K K +NL +R +GLG+MG + L KI + S+E + D ME I Y A AS+ L
Sbjct: 534 PNRKVKSTNLANRAIGLGVMGEAEMLATQKIHWGSQEHFEKIDMIMEAISYNAILASSNL 593
Query: 487 AEEKGRYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIK 541
A EKG+Y ++GS W +GI P D + KL++ RG + NW LR ++K
Sbjct: 594 ALEKGKYPQFEGSNWSKGIFPIDIANKEACKLVD--RGGLF-----DREYNWNFLREKVK 646
Query: 542 KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKG 601
K GMRN +AIAPT++IS ++G + +IEP YR + NLSG + L
Sbjct: 647 KDGMRNGYLMAIAPTSSISILVGTTQTIEPIYRKKWYEENLSGMIPVVVPNL-------- 698
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLN 661
NL+ F Y A+++ II+A ++RQKW+DQ QS N
Sbjct: 699 --------NLETF---------------PYYTRAYDLDQKQIIKAAAIRQKWMDQGQSTN 735
Query: 662 IYI---SNKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
+I N S K L E Y LAW GLK+TYYLRS S
Sbjct: 736 TFIKLDGNASIKSLHEIYTLAWKLGLKSTYYLRSES 771
>gi|157736291|ref|YP_001488974.1| ribonucleotide-diphosphate reductase subunit alpha [Arcobacter
butzleri RM4018]
gi|157698145|gb|ABV66305.1| ribonucleoside-diphosphate reductase, alpha chain [Arcobacter
butzleri RM4018]
Length = 794
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 298/745 (40%), Positives = 416/745 (55%), Gaps = 96/745 (12%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL ++ + V I + + + +I GI+ L P +A+ ++L
Sbjct: 73 PNWTFVAARLFLFDLYHRV---GIATHGVKGEAYCHLKDYIKFGIEAGRLIPSIADGYDL 129
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
L+ + P RDL FNYLG+K LYDRY + + + IE+PQ FM IAM L+ NE +++
Sbjct: 130 DELNAYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQMFMAIAMFLAQNEKDKQS 189
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A +FY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSKY
Sbjct: 190 KAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMALLSKYG 249
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW Q+RSLG I + G +PFLK+ ND+A+AV+Q G RKGAI YLE WHM
Sbjct: 250 GGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQLGTRKGAIAVYLEPWHM 309
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +F++L+KN+G++RRR HD+ A+W+ DLFM+RV++ S WTLF PY+V DL FG E
Sbjct: 310 DIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWTLFDPYEVRDLSETFGDE 369
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
F+ Y+ YEN + K ++ A LW+KIL+ FE G P++ +KD N +P HVG
Sbjct: 370 FKAKYVAYENDETITK----DRMKAKDLWKKILTSYFEVGSPFLCWKDTANRTNPNSHVG 425
Query: 363 IIHSSNLCTEITLNTSKNEI------------------------GVCNLGSINLTLHMKN 398
I SSNLCTEI NT+ N GV + L N
Sbjct: 426 HIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVDGGVTKKANKVSALDSVN 485
Query: 399 GK------------------LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKA 431
GK L I L K + A+RMLDNVID+N+Y ++K
Sbjct: 486 GKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAIRMLDNVIDLNFYPLRKV 545
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL+ R +GLG+MG + L ++ + S E K DQ ME I Y +S++LA EKG
Sbjct: 546 KATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEAISYNTIKSSSDLASEKG 605
Query: 492 RYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCV 551
Y +++GS W +GI+P D L + + K S +W LR ++KK GMRN +
Sbjct: 606 VYPTFEGSKWSKGIMPHD---LAPQAVNALVDKDLFDTSYDWDVLREKVKKDGMRNGYLM 662
Query: 552 AIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANL 611
AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 663 AIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV---------------------- 700
Query: 612 KYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSG 669
+ R+ + Y AFEI +I+A ++RQKWIDQ QS NI++S SG
Sbjct: 701 ---------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLDKASG 751
Query: 670 KKLDETYKLAWLRGLKTTYYLRSIS 694
K L E Y LAW GLK+TYYLRS S
Sbjct: 752 KYLHEIYTLAWKLGLKSTYYLRSQS 776
>gi|384154732|ref|YP_005537547.1| ribonucleotide-diphosphate reductase subunit alpha [Arcobacter
butzleri ED-1]
gi|345468286|dbj|BAK69737.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
butzleri ED-1]
Length = 794
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 299/745 (40%), Positives = 416/745 (55%), Gaps = 96/745 (12%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL ++ + V I + + + +I GI+ L P +A+ ++L
Sbjct: 73 PNWTFVAARLFLFDLYHRV---GIATHGVKGEAYCHLKDYIKFGIEAGRLIPSIADGYDL 129
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
L+ + P RDL FNYLG+K LYDRY + + + IE+PQ FM IAM L+ NE +++
Sbjct: 130 DELNVYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQMFMAIAMFLAQNEKDKQS 189
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A +FY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSKY
Sbjct: 190 KAKEFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMALLSKYG 249
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW Q+RSLG I + G +PFLK+ ND+A+AV+Q G RKGAI YLE WHM
Sbjct: 250 GGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQLGTRKGAIAVYLEPWHM 309
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +F++L+KN+G++RRR HD+ A+W+ DLFM+RV++ S WTLF PY+V DL FG E
Sbjct: 310 DIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWTLFDPYEVRDLSETFGDE 369
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
F+ YI YEN + K ++ A LW+KIL+ FE G P++ +KD N +P HVG
Sbjct: 370 FKAKYIAYENDETITK----DRMKAKDLWKKILTSYFEVGSPFLCWKDTANRTNPNSHVG 425
Query: 363 IIHSSNLCTEITLNTSKNEI------------------------GVCNLGSINLTLHMKN 398
I SSNLCTEI NT+ N GV + L N
Sbjct: 426 HIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVDGGVTKKANKVSALDSVN 485
Query: 399 GK------------------LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKA 431
GK L I L K + A+RMLDNVID+N+Y ++K
Sbjct: 486 GKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAIRMLDNVIDLNFYPLRKV 545
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL+ R +GLG+MG + L ++ + S E K DQ ME I Y +S++LA EKG
Sbjct: 546 KATNLKSRSIGLGVMGEAEMLAQYQLAWGSSEHFKKIDQIMEAISYNTIKSSSDLASEKG 605
Query: 492 RYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCV 551
Y +++GS W +GI+P D L + + K S +W LR ++KK GMRN +
Sbjct: 606 VYPTFEGSKWSKGIMPHD---LAPQAVNALVDKDLFDTSYDWDVLREKVKKDGMRNGYLM 662
Query: 552 AIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANL 611
AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 663 AIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV---------------------- 700
Query: 612 KYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSG 669
+ R+ + Y AFEI +I+A ++RQKWIDQ QS NI++S SG
Sbjct: 701 ---------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLDKASG 751
Query: 670 KKLDETYKLAWLRGLKTTYYLRSIS 694
K L E Y LAW GLK+TYYLRS S
Sbjct: 752 KYLHEIYTLAWKLGLKSTYYLRSQS 776
>gi|296271634|ref|YP_003654265.1| ribonucleoside-diphosphate reductase subunit alpha [Arcobacter
nitrofigilis DSM 7299]
gi|296095809|gb|ADG91759.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcobacter
nitrofigilis DSM 7299]
Length = 794
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 298/750 (39%), Positives = 423/750 (56%), Gaps = 106/750 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL ++ + V G+ + + + S +I D + P L ++L
Sbjct: 73 PNWTFVAARLFIFNLYHRV-GRTTNSV--KGEAYSHMSDYIKTAQDAGRMIPGLERGYDL 129
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREK 122
L+N L PERDLQFNYLG+K LYDRY + + IE+PQ FM IAM L+ +E +++
Sbjct: 130 EDLNNYLKPERDLQFNYLGIKTLYDRYLIKDKNSDPIELPQHMFMGIAMFLAQDEDDKQA 189
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A +FY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSKY
Sbjct: 190 RAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMALLSKYG 249
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW Q+R+LG I G + G +PFLK+ ND+A+AV+Q G RKGAI YLE WHM
Sbjct: 250 GGIGWDWNQIRALGGAIDGHKSAAGGTVPFLKITNDIAIAVDQLGTRKGAIAVYLEPWHM 309
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +F++L+KN+G++RRR HD+ ++W+ DLFM+R+++ S WTLF P DV DL G
Sbjct: 310 DISDFLDLKKNSGEERRRAHDLFPSLWICDLFMQRIMEDSHWTLFDPNDVKDLSELHGDA 369
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE+ YI YEN + K +I A LW+KIL+ FE+G P++ FKD N +P HVG
Sbjct: 370 FEKRYIEYENDNSIVK----DRIKAKDLWKKILTSYFESGSPFLCFKDNANRANPNAHVG 425
Query: 363 IIHSSNLCTEITLNTSKNEIGV---CNLGSINL-----TLHMKNG---------KLDPIK 405
I SSNLCTEI NT+ N+ + + GSI L T+ + +G LD +
Sbjct: 426 HIRSSNLCTEIFQNTNPNKYKIKLEFDDGSIELYDEDDTIKVDSGIIKKANKVTALDSVG 485
Query: 406 LKK----------------------------------TIRIAMRMLDNVIDINYYAVKKA 431
KK + A+RMLDNVID+N+Y ++K
Sbjct: 486 GKKIFIVEKEKTDGDTAVCNLASVNLSKIHTKEDIERVVPTAIRMLDNVIDLNFYPLRKV 545
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL+ R +GLG+MG L K+ + S + +K D+ ME I Y A +S ELA EKG
Sbjct: 546 KATNLKSRSIGLGVMGEAQMLAEEKLVWGSVDHLKKIDKVMEAISYNAIKSSAELAVEKG 605
Query: 492 RYSSYDGSLWDQGILPQDSL-----KLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
+Y ++DGS W +GI+P D L+EK+ +W LR ++KK GMR
Sbjct: 606 KYPTFDGSNWSKGIMPHDHAPQAVNALVEKDL--------FDTGYDWDALRAQVKKDGMR 657
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +A+APT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 658 NGYLMAVAPTSSISILVGTTQAIEPVYKRKWYEENLSGLIPVV----------------- 700
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS- 665
+ ++ + Y A+E+ II+A +VRQKWIDQ QS NI++S
Sbjct: 701 --------------VPKLSPETWSYYTPAYEVDQLDIIKAAAVRQKWIDQGQSTNIFLSL 746
Query: 666 -NKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
SGK + + Y LAW GLK+TYYLRS S
Sbjct: 747 DKASGKYMHQIYTLAWQLGLKSTYYLRSQS 776
>gi|440804772|gb|ELR25641.1| ribonucleosidediphosphate reductase, alpha subunit [Acanthamoeba
castellanii str. Neff]
Length = 825
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 280/703 (39%), Positives = 414/703 (58%), Gaps = 35/703 (4%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINK--GIDNKLLNPKLAEF 61
+P Y+ + AR+ + +QK+ + ++ ++N G+++ L+ + E
Sbjct: 73 NPGYNVLAARIAISNLQKDTS-------ESLLETARTLHTYVNSKTGLNSALIADDVFEV 125
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N L A+ ERD + Y G K L Y ++G +E PQ MR+A+GL
Sbjct: 126 IANNTEALEAAIKYERDFNYTYFGFKTLERSYLFRVDGKIVERPQHMLMRVAVGL---HK 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ I+ Y+LLS F +TPTLFN+GT R QLSSC+L T+ +D + GI++++K+ AL
Sbjct: 183 DNIPAVIETYDLLSQQLFTHATPTLFNAGTPRPQLSSCFLLTMKEDSIEGIYDTLKQCAL 242
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G ++R+ S I+GTNG S G+IP L+V ND A V+QGG KRKGA Y
Sbjct: 243 ISKSAGGIGLAAHRIRASNSYIRGTNGTSNGLIPMLRVYNDTARYVDQGGGKRKGAFAIY 302
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI +F++L+KN G + R D+ +W+PDLFMKRV W+LF P + P L
Sbjct: 303 LEPWHADIFDFLDLKKNHGKEENRARDLFYGLWIPDLFMKRVETGGDWSLFCPNEAPGLF 362
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +GKEFEE Y YE + + ++ + A LW IL ETG P++ +KDACN +S
Sbjct: 363 DSWGKEFEEKYERYEQEGRARRV-----VKAQELWFAILESQIETGTPYMLYKDACNGKS 417
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
QQH+G I SSNLCTE+ TS +E+ VCNL S+ L + NG+ D KL +++ +
Sbjct: 418 NQQHLGTIQSSNLCTEVVQYTSPDEVAVCNLASLALPKFITNGEFDHKKLHDVVKVVTKN 477
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VIDINYY V +A+ SN+RHRP+G+G+ G D IM+ P+ S EA + E I
Sbjct: 478 LNKVIDINYYPVPEARNSNMRHRPIGIGVQGLADVFMIMRHPWESDEARELNRAIFETIY 537
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA+ +G Y +Y+GS +G L D ++ +R +W L
Sbjct: 538 YAALVASNELAQVEGTYQTYEGSPASKGKLQPDLWGVVPSDR------------WDWATL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R I + G+RNS VA PTA+ S I+G + EP N++ + L+G+FT +N +L++E
Sbjct: 586 RANIAQHGLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRRILAGDFTVVNEHLLRE 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L+++GLW ++ L +G++ +I IPDD++K+Y T +E+ II+ + R +IDQ
Sbjct: 646 LQQRGLWSPALKNKLVSHNGSVQRIEEIPDDIKKLYKTVWELPQRVIIDMAADRSAYIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
SQSLN+Y+ S KL + AW +GLKT YYLR+ A A
Sbjct: 706 SQSLNVYMGEPSFAKLTSMHFYAWRKGLKTGMYYLRTRPAANA 748
>gi|152989805|ref|YP_001355527.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratiruptor
sp. SB155-2]
gi|151421666|dbj|BAF69170.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitratiruptor
sp. SB155-2]
Length = 789
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 298/754 (39%), Positives = 426/754 (56%), Gaps = 108/754 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P +S V ARL +Y + +V G + ++ KG + P L E ++L
Sbjct: 72 PNWSFVAARLFLYDLYHKVSG---------FTGYRHLREYFEKGEKEGRIIPGLKEKYDL 122
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREK 122
L++ + PERDLQF YLG++ LYDRY L IE+PQ FM +AM L+ NE + +
Sbjct: 123 DDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRNNNPIELPQQLFMAVAMFLAQNELDCQS 182
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A +FY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSKY
Sbjct: 183 WAKRFYDVISKFEVMVATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYG 242
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW++VR++GS I G + G++PFLK+ ND+A+AV+Q G RKGAI Y+E WHM
Sbjct: 243 GGIGWDWSRVRAMGSYIDGHKHAAGGIVPFLKITNDIAIAVDQLGTRKGAIAVYIEPWHM 302
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI++FI+L+KN+G++RRR HD+ A+W+ DLFMKRV + WTLF PY+ DL +G+E
Sbjct: 303 DIKDFIDLKKNSGEERRRAHDLFPALWINDLFMKRVAEDGIWTLFDPYETSDLTEVWGEE 362
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE+ Y+ YE + + L +++ A LW+ IL FETG P++ FKD N +P H G
Sbjct: 363 FEKRYLEYEQRDDI----LKEQVRAKELWKLILRSYFETGSPFLCFKDNANKCNPNDHAG 418
Query: 363 IIHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN 391
II SSNLCTEI NT N E G + ++ SIN
Sbjct: 419 IIRSSNLCTEIFQNTEPNYYKIKIKYEDGSVEYYDEEEEIRIDTGIVKKAKKISSIDSIN 478
Query: 392 --LTLHMKNGKLDPI------------------KLKKTIRIAMRMLDNVIDINYYAVKKA 431
++ K+D + +++ + IA+RMLDNVID+N+Y ++K
Sbjct: 479 GKKVFIVEKEKVDGLTAVCNLASVNLSKVHTKEDIERVVPIAIRMLDNVIDLNFYPLEKV 538
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL+ R +GLG+MG L KI + S E K D+ MEMI Y A +S+ LA EKG
Sbjct: 539 KKTNLQTRSIGLGVMGEAQMLAEHKIEWGSDEHFKKIDEIMEMISYNAIRSSSNLAVEKG 598
Query: 492 RYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GILP D+ K L +RG + + +W +LR ++K+ GMRN
Sbjct: 599 VYPLFENSKWAKGILPIDTANKEAKKLTPDRGGLFGYI-----YDWNELREKVKRDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS + G + +IEP Y+ + NLSG +
Sbjct: 654 GYLMAIAPTSSISILTGTTQTIEPVYKRKWFEENLSGLIPVV------------------ 695
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI--S 665
+ + D + Y A+++ +I+A +VRQKWIDQ QS+NI+I
Sbjct: 696 -------------VPNLSPDTWQYYTPAYDLDQRLLIKAAAVRQKWIDQGQSVNIFIRLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG+ L E Y LAW GLK+TYYLRS S A+
Sbjct: 743 KASGRYLHEIYTLAWKLGLKSTYYLRSQSPEVAQ 776
>gi|307722071|ref|YP_003893211.1| ribonucleoside-diphosphate reductase class Ia subunit alpha
[Sulfurimonas autotrophica DSM 16294]
gi|306980164|gb|ADN10199.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
[Sulfurimonas autotrophica DSM 16294]
Length = 788
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 296/749 (39%), Positives = 425/749 (56%), Gaps = 109/749 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V +RL ++ + +V G K ++YF K +G ++L ++L
Sbjct: 72 PNWTFVASRLFLFNLYHQVNG-----FTGYCKLEKYFEKGEKEG---RILLGLKEMYDLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L + PERDLQFNYLG+K LYDRY + + IE+PQ FM IAM L+ E NR++
Sbjct: 124 ELEKHIKPERDLQFNYLGIKTLYDRYLIKDRDSNPIELPQHMFMAIAMFLAQREENRQEW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
AIKFYN++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF++ KE A+LSK+ G
Sbjct: 184 AIKFYNMISKFEVMLATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDAYKEMAMLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DWTQVRS+GS I G + G IPFLK+ ND+A+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDWTQVRSMGSYIDGHKNAAGGTIPFLKITNDIAIAVDQLGTRKGAIAVYLEPWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++L+KN+G++RRR HD+ ++W+ D+FMKRV + WTLF PYD +L N +G+EF
Sbjct: 304 INDFLDLKKNSGEERRRAHDLFPSLWLNDMFMKRVEEDGIWTLFDPYDTRELTNMYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
+ Y+ E + K +K+ A LW+KIL+ FETG P++ FKD N +P H GI
Sbjct: 364 NKRYLELEQDESIIK----EKVKAKDLWKKILTSYFETGSPFLCFKDNANRANPNDHYGI 419
Query: 364 IHSSNLCTEITLNTSKNE----------------------------------IGVCNLGS 389
I SSNLCTEI NT N + +LG
Sbjct: 420 IRSSNLCTEIFQNTQPNHYKIKFIFENGESVSYEENEMVTVDSGITKPAKKVTALDSLGG 479
Query: 390 INL-------------TLHMKNGKLDPIKLKKTI-RI---AMRMLDNVIDINYYAVKKAK 432
+ + ++ + L + KK I RI A+R LDNVID+N+Y V+K K
Sbjct: 480 LPIFVVEKEKVDGSTAVCNLASINLSRVNTKKDIDRIVPTAIRCLDNVIDLNFYPVEKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N+R R +GLG+MG L + S+E D+ ME +CY A AS++LA EKG
Sbjct: 540 RTNMRSRSIGLGVMGEAQMLAEAGTMWGSQEHFDKIDEIMESVCYNAVSASSDLAAEKGS 599
Query: 493 YSSYDGSLWDQGILPQDS-----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++GS W +GI+PQD + L+ +RG + + + W +LR ++KK GMRN
Sbjct: 600 YPEFEGSKWSRGIMPQDHANAEVVNLV--DRGGLF-----ASTYEWDELRAKVKKQGMRN 652
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+A+APT++IS + G + +IEP ++ + NLSG +
Sbjct: 653 GYLMAVAPTSSISILTGTTQAIEPVFKRKWSEENLSGLIPVV------------------ 694
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
+ + D Y A++++ +I+A ++RQKWIDQ QSLNI+I+
Sbjct: 695 -------------VPNLSPDTWSYYTPAYDLNQTVLIKAAAIRQKWIDQGQSLNIFITLD 741
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
SG+ L+E Y LAW GLK+TYYLRS S
Sbjct: 742 KASGRYLNEIYMLAWKLGLKSTYYLRSQS 770
>gi|419694596|ref|ZP_14222557.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9872]
gi|380670294|gb|EIB85552.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9872]
Length = 789
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 306/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SIN
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSING 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGT 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|153952334|ref|YP_001397294.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. doylei 269.97]
gi|152939780|gb|ABS44521.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. doylei 269.97]
Length = 789
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 306/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY L +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLLKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|154174561|ref|YP_001407352.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
curvus 525.92]
gi|112802438|gb|EAT99782.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
curvus 525.92]
Length = 790
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 299/762 (39%), Positives = 424/762 (55%), Gaps = 118/762 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL +Y + +V G + +++ KG + L E ++L
Sbjct: 71 PNWTFVAARLFLYDLYHKVTG---------FNGYNHLREYLQKGEKAGRIIAGLKEKYDL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREK 122
L+ + PERDLQF YLG+K LYDRY + + G IE+PQ FM IAM L+ NE + +
Sbjct: 122 DDLNAYIRPERDLQFAYLGIKTLYDRYLIKDKNGAPIELPQQMFMAIAMFLAQNELDCQG 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+
Sbjct: 182 WAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW +VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYIEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN+G++RRR H++ A+W+ DLFMKRV + W+LF P V DL + +G+
Sbjct: 302 DVADFLDLRKNSGEERRRAHELFPALWINDLFMKRVRENGRWSLFDPAQVSDLCDLYGEN 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE Y YEN+ + K + K LW+KIL+ FETG P++ FKD N +P H G
Sbjct: 362 FERRYEQYENEENIQKNVVLAK----ELWKKILTSYFETGMPFLCFKDNANKANPNDHEG 417
Query: 363 IIHSSNLCT-----------------------------EITLNTS--------------- 378
II SSNLCT ++T+++
Sbjct: 418 IIRSSNLCTEIFQNTAPNYYKIKITFDDGGERLFDEEEDVTIDSGITKKAKKLSALDSLG 477
Query: 379 ------------KNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY 426
+ + VCNL S+NL+ N K D +++ + IA+RMLDNVID+N+Y
Sbjct: 478 GRQIFIVEKESVEGKTAVCNLASVNLS--KVNKKAD---IERVVPIAVRMLDNVIDLNFY 532
Query: 427 AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTEL 486
KK K++NL R +GLG+MG L + + E D ME I Y A Y S+ L
Sbjct: 533 PHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGGYEHFALIDSIMENISYQAIYTSSNL 592
Query: 487 AEEKGRYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542
A EKG+Y +++GS W +G++P D+ K L G + ++ +W+KLR ++K
Sbjct: 593 AVEKGKYPTFEGSKWSRGVMPIDTANENAKALLNHGG-----LFDEDTCDWEKLRAKVKT 647
Query: 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGL 602
GMRN +AIAPT++IS ++G + +IEP Y+ + NLSG
Sbjct: 648 DGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG------------------ 689
Query: 603 WDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNI 662
MI N+ + + D + Y A+E+ ++ A +VRQKWIDQ QSLNI
Sbjct: 690 ----MIPNV---------VPNLSPDTWQFYTPAYELDQRVLVRAAAVRQKWIDQGQSLNI 736
Query: 663 YIS--NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
++S SG L E Y LAW GLK+TYYLRS S + K +N
Sbjct: 737 FMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDSEKVNN 778
>gi|399033616|ref|ZP_10732238.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
sp. CF136]
gi|398068051|gb|EJL59512.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
sp. CF136]
Length = 796
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 293/761 (38%), Positives = 447/761 (58%), Gaps = 54/761 (7%)
Query: 5 PVYSQVTARLL---MYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP---KL 58
P Y+Q+ AR+ ++ K+ F + +K + Y G D LL+ K+
Sbjct: 71 PDYAQLAARVAISNLHSNTKKSFSETMKDM--------YHYVNPRNGQDAPLLSDEVFKV 122
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+ N + L + ++ RD ++Y G K L Y L I G +E PQ MR+++G+ L++
Sbjct: 123 IQENAAFLDSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLDDL 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
K I+ Y+L+S F +TPTLFN+GT + Q+SSC+L + DD + GI++++K+ A
Sbjct: 183 ---KSVIETYDLMSKKYFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 240 ISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIY 299
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
+ETWH DI EF++L+KNTG + R D+ A+W DLFMKRV + +TWTL P + P L+
Sbjct: 300 IETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDTTWTLMCPNECPGLY 359
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+EFE Y+ YE + K G+ K I A LW KIL ETG P++ +KDA N +S
Sbjct: 360 DVYGEEFEALYMDYEFRGK-GR----KTIRARELWEKILESQIETGTPYMLYKDAANRKS 414
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
+++G I SSNLCTEI TSK+EI VCNL SI+L + ++NGK D L + R
Sbjct: 415 NHKNLGTIRSSNLCTEIMEYTSKDEIAVCNLASISLPMFIENGKFDHQALYNVTKRVTRN 474
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY VK+A+ SN+RHRPVGLG+ G D ++++P++S EA + E +
Sbjct: 475 LNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMLRLPFTSDEAKALNQEIFETLY 534
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS E+A+E+G YS+++GS +G + + ++E ++ +W L
Sbjct: 535 FAAVTASMEMAKEEGPYSTFEGSPMSKGEFQYNMWGMKDEELSGRW---------DWASL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R + + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+ +
Sbjct: 586 RKEVVEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHD 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E++ + +G++ I IP DL+++Y T +E+S II+ R +IDQ
Sbjct: 646 LVERGLWNETLKQEIMRHNGSVQNIDVIPQDLKELYKTVWEMSMKDIIDMSRQRGYFIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDS------ 709
SQSLN+++ + + KL + AW GLKT YYLR+ SA A K F + D
Sbjct: 706 SQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKSAVDAIK--FTLNNDKKEEVPS 763
Query: 710 --VNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+EIS++ Y K L+ ++ D +CE C
Sbjct: 764 LVAETEEISVEDY----------KAMLLKAQAADPEDCEMC 794
>gi|86150529|ref|ZP_01068753.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|86152387|ref|ZP_01070597.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|205355764|ref|ZP_03222534.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
jejuni subsp. jejuni CG8421]
gi|315123636|ref|YP_004065640.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
gi|419644614|ref|ZP_14176191.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9081]
gi|85838981|gb|EAQ56246.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|85840684|gb|EAQ57936.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|205346541|gb|EDZ33174.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
jejuni subsp. jejuni CG8421]
gi|315017358|gb|ADT65451.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
gi|380621716|gb|EIB40505.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9081]
Length = 789
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 427/749 (57%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|419648556|ref|ZP_14179893.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|380626256|gb|EIB44741.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9217]
Length = 789
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFQKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|419697924|ref|ZP_14225651.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23211]
gi|380676954|gb|EIB91830.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23211]
Length = 789
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFQKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTTDLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|149194866|ref|ZP_01871960.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
mediatlanticus TB-2]
gi|149135025|gb|EDM23507.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
mediatlanticus TB-2]
Length = 813
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 306/770 (39%), Positives = 430/770 (55%), Gaps = 129/770 (16%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL +Y + V G +EYF + G ++L P L E ++L
Sbjct: 75 PNWNFVAARLFLYDLYHRVTGYTGYN-----HLREYFERGERAG---RIL-PGLKEKYDL 125
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESN--- 119
L++ + PERDLQF YLG+K LYDRY + E IE+PQ FM +AM L+ NE+N
Sbjct: 126 DDLNSYIKPERDLQFTYLGIKTLYDRYIIKDKENNPIELPQQLFMGVAMFLAQNETNPNS 185
Query: 120 -----------------REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP 162
R A KFY+++S F M +TPTL N+ T R QLSSCY+ ++
Sbjct: 186 IPNEDKDKVDLNNPKSIRGYWAKKFYDVISKFEVMVATPTLSNARTTRHQLSSCYVGSMN 245
Query: 163 DDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVA 222
D++ GIF+ KE ALLSK+ GG+G D++++R+LGS I + GVIP+LK+ ND+A+A
Sbjct: 246 DNIEGIFDDYKEMALLSKFGGGIGWDFSKIRALGSFIDNHKNAAGGVIPWLKITNDIAIA 305
Query: 223 VNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKS 282
V+Q G RKGAI Y+E WHMDI +F++L+KN+G++RRR HD+ A+W+PDLFMKRV +
Sbjct: 306 VDQLGTRKGAIAVYIEPWHMDILDFLDLKKNSGEERRRAHDLFPALWIPDLFMKRVEEDG 365
Query: 283 TWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETG 342
WTLF PY+ DL N +G+EFE+ YI YEN+ + K +K+ A LW+KIL +ETG
Sbjct: 366 LWTLFDPYETGDLTNLYGEEFEKKYIEYENREDITK----RKVKAKELWKKILLEYYETG 421
Query: 343 HPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGV------------------ 384
+P++ FKD N R+ H GII SSNLCTEI NT N V
Sbjct: 422 NPFLCFKDNANKRNQNDHSGIIRSSNLCTEIFQNTEPNHYKVKVTFEDGSEEYFNEDDDV 481
Query: 385 -CNLGSINL--------TLHMKNGKL---------------------------DPIKLKK 408
+LG + + +LH NGK P K+ +
Sbjct: 482 KVSLGDVEVVVKGKKITSLHYINGKKVYIVEKVPFDGKTAVCNLASVNLSKVNTPEKIAE 541
Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
+ IA+RMLDNVID+NYY V+K K +NL++R +GLG MG L +I + S E +K
Sbjct: 542 VVPIAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQLLAERQIFWGSDEHLKLI 601
Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528
D+ E I Y+A S ELAEEKG Y ++GS W +GILP D+ E K ++ ++
Sbjct: 602 DEIFEGISYWAIKTSAELAEEKGAYPEFEGSRWSKGILPIDTA----NEEAKKLVERDLF 657
Query: 529 ESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
++ +WK LR ++KK GMRN +AIAPT++IS + G + +IEP Y+ + NLSG
Sbjct: 658 SAMQYDWKSLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPVYKRKWYEENLSGLI 716
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
+ + + D Y A+E+ +++A
Sbjct: 717 PVV-------------------------------VPNLSADTYMFYTPAYELDQRILVKA 745
Query: 647 GSVRQKWIDQSQSLNIYISNK--SGKKLDETYKLAWLRGLKTTYYLRSIS 694
++RQKWIDQ QSLNI+I+ SG+ L+E Y L W GLK+ YYLRS S
Sbjct: 746 AAIRQKWIDQGQSLNIFITTDKASGRYLNEIYMLGWKLGLKSFYYLRSQS 795
>gi|419625168|ref|ZP_14158192.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|380605512|gb|EIB25485.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23223]
Length = 789
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|283956202|ref|ZP_06373687.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 1336]
gi|419622423|ref|ZP_14155655.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|419641755|ref|ZP_14173623.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23357]
gi|283792356|gb|EFC31140.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 1336]
gi|380599473|gb|EIB19841.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|380615555|gb|EIB34799.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23357]
Length = 789
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|420490854|ref|ZP_14989436.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-13]
gi|420524697|ref|ZP_15023104.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-13b]
gi|393106314|gb|EJC06858.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-13]
gi|393130968|gb|EJC31392.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-13b]
Length = 788
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 309/767 (40%), Positives = 432/767 (56%), Gaps = 112/767 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKN----EIGVCNLGSI-------------NLTLH----------- 395
I SSNLCTEI NT+ N +I + G+I N+T +
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTD-GTIEFFEEKELVTTDSNITKYANKLTSTDILK 478
Query: 396 ----------MKNGK----------LDPIKLKKTIRIAMRMLDNVID----INYYAVKKA 431
K+G+ L I ++ I+ + ++ ++D +N+Y +K
Sbjct: 479 GKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKV 538
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 539 KATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKG 598
Query: 492 RYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMR
Sbjct: 599 VYKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMR 650
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 651 NGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV----------------- 693
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--I 664
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 -VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRI 739
Query: 665 SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 740 ENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|384440703|ref|YP_005657006.1| Ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni M1]
gi|419630359|ref|ZP_14163043.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 60004]
gi|419638958|ref|ZP_14171002.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 86605]
gi|307746986|gb|ADN90256.1| Ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni M1]
gi|380605525|gb|EIB25497.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 60004]
gi|380617701|gb|EIB36863.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 86605]
Length = 789
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFQKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|121613048|ref|YP_999744.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167004719|ref|ZP_02270477.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 81-176]
gi|419618045|ref|ZP_14151602.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 129-258]
gi|419680884|ref|ZP_14209735.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 140-16]
gi|87249021|gb|EAQ71983.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 81-176]
gi|380595656|gb|EIB16381.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 129-258]
gi|380659316|gb|EIB75295.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 140-16]
Length = 789
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFQKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|419650495|ref|ZP_14181714.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|380628490|gb|EIB46801.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-1025]
Length = 789
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDRGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|384447344|ref|YP_005655395.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni IA3902]
gi|419636005|ref|ZP_14168289.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 55037]
gi|419646812|ref|ZP_14178267.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 53161]
gi|419651451|ref|ZP_14182547.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-894]
gi|419657469|ref|ZP_14188124.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-1]
gi|284925327|gb|ADC27679.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni IA3902]
gi|380611050|gb|EIB30611.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 55037]
gi|380622950|gb|EIB41682.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 53161]
gi|380631050|gb|EIB49260.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-894]
gi|380634807|gb|EIB52664.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-1]
Length = 789
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|57236936|ref|YP_178051.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni RM1221]
gi|148926840|ref|ZP_01810519.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|384442378|ref|YP_005658630.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|419659797|ref|ZP_14190309.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|419666986|ref|ZP_14196971.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|419669383|ref|ZP_14199169.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|419695675|ref|ZP_14223565.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23210]
gi|57165740|gb|AAW34519.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni RM1221]
gi|145844565|gb|EDK21672.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|315057465|gb|ADT71794.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|380638513|gb|EIB56067.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|380646803|gb|EIB63751.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|380647489|gb|EIB64404.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|380677880|gb|EIB92740.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23210]
Length = 789
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|420472263|ref|ZP_14970956.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-18]
gi|393089080|gb|EJB89721.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp H-18]
Length = 788
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 309/767 (40%), Positives = 432/767 (56%), Gaps = 112/767 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKN----EIGVCNLGSI-------------NLTLH----------- 395
I SSNLCTEI NT+ N +I + G+I N+T +
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTD-GAIEFFEEKELVTTDSNITKYANKLTSTDVLK 478
Query: 396 ----------MKNGK----------LDPIKLKKTIRIAMRMLDNVID----INYYAVKKA 431
K+G+ L I ++ I+ + ++ ++D +N+Y +K
Sbjct: 479 GKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKV 538
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 539 KATNLQNRAIGLGVMGEAQMLAEHQITWGSKEHLEKIDALMEQISYHAIDTSANLAKEKG 598
Query: 492 RYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMR
Sbjct: 599 VYKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMR 650
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 651 NGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV----------------- 693
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--I 664
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 -VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRI 739
Query: 665 SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 740 ENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|419683417|ref|ZP_14212117.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1213]
gi|380658851|gb|EIB74846.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1213]
Length = 789
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 425/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIEG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|157414345|ref|YP_001481601.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 81116]
gi|218561717|ref|YP_002343496.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
gi|317510018|ref|ZP_07967526.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 305]
gi|403054840|ref|YP_006632245.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
gi|415747153|ref|ZP_11475836.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 327]
gi|419620677|ref|ZP_14154096.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 51494]
gi|419671516|ref|ZP_14201175.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|419686603|ref|ZP_14215032.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1798]
gi|419692435|ref|ZP_14220523.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1928]
gi|112359423|emb|CAL34205.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
gi|157385309|gb|ABV51624.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
jejuni subsp. jejuni 81116]
gi|315930489|gb|EFV09541.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 305]
gi|315931282|gb|EFV10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 327]
gi|380598828|gb|EIB19215.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 51494]
gi|380649319|gb|EIB66054.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|380664011|gb|EIB79627.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1798]
gi|380669748|gb|EIB85021.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1928]
gi|401780492|emb|CCK66182.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
Length = 789
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 425/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFQKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIEG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|384894277|ref|YP_005768326.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Sat464]
gi|308063531|gb|ADO05418.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori Sat464]
Length = 788
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 309/767 (40%), Positives = 432/767 (56%), Gaps = 112/767 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDTMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKN----EIGVCNLGSI-------------NLTLH----------- 395
I SSNLCTEI NT+ N +I + G+I N+T +
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTD-GAIEFFEEKQLVTTDNNITKYANKLTSTDTLK 478
Query: 396 ----------MKNGK----------LDPIKLKKTIRIAMRMLDNVID----INYYAVKKA 431
K+G+ L I ++ I+ + ++ ++D +N+Y +K
Sbjct: 479 GKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKV 538
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 539 KATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKG 598
Query: 492 RYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMR
Sbjct: 599 VYKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMR 650
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 651 NGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV----------------- 693
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--I 664
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 -VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRI 739
Query: 665 SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 740 ENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|419631631|ref|ZP_14164210.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|419685273|ref|ZP_14213836.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1577]
gi|380610236|gb|EIB29838.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|380664600|gb|EIB80196.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1577]
Length = 789
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSNEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|283953643|ref|ZP_06371174.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 414]
gi|283794684|gb|EFC33422.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 414]
Length = 789
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 424/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKRVNG-----MNRYNHLREYFQKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNSQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E +LLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMSLLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 IGDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEKYEKDESITK----EIVEAKDLWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SIN
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDEVHFDEDQKVMIDGGYEKPAKKISTLDSING 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAETKIHWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y + GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFKGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWAKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|208434597|ref|YP_002266263.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pylori G27]
gi|208432526|gb|ACI27397.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter
pylori G27]
Length = 788
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 310/767 (40%), Positives = 431/767 (56%), Gaps = 112/767 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKN----EIGVCNLGSI-------------NLTLH----------- 395
I SSNLCTEI NT+ N +I + G+I N+T +
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTD-GTIEFFEEKELVTTDSNITKYANKLTSTDILK 478
Query: 396 ----------MKNGK----------LDPIKLKKTIRIAMRMLDNVID----INYYAVKKA 431
K+G+ L I ++ I+ + ++ ++D +N+Y +K
Sbjct: 479 GKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKV 538
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 539 KATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKG 598
Query: 492 RYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMR
Sbjct: 599 VYKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKVNGMR 650
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 651 NGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV----------------- 693
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--I 664
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 -VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRI 739
Query: 665 SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 740 ENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|419672621|ref|ZP_14202112.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 51037]
gi|380655254|gb|EIB71572.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 51037]
Length = 789
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/749 (40%), Positives = 425/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFQKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIEG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|319955827|ref|YP_004167090.1| ribonucleoside diphosphate reductase subunit alpha [Nitratifractor
salsuginis DSM 16511]
gi|319418231|gb|ADV45341.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
[Nitratifractor salsuginis DSM 16511]
Length = 791
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 294/749 (39%), Positives = 423/749 (56%), Gaps = 109/749 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y I +V G I ++YF + +G ++L +++L
Sbjct: 72 PNWTFVAARLFLYDIYHKVSG-----FTGYIHLRDYFDRGEKEG---RILLGLKEKYDLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERDLQF YLG++ LYDRY L +G IE+PQ FM +AM L+ NE + +
Sbjct: 124 DLNDYIKPERDLQFTYLGIRTLYDRYLLKDRQGQPIELPQHLFMAVAMFLAQNEFDCQTW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY++LS F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSK+ G
Sbjct: 184 AKKFYDILSKFEVMAATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDGYKEMALLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DWTQVR +GS I G + G++PFLK+ NDVA+AV+Q G RKGAI Y+E WH+D
Sbjct: 244 GIGWDWTQVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLGTRKGAIAVYIEPWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +F++L+KN+G++RRR HD+ A+W+ DLFMKRV + WTLF PY+V +L + +G+EF
Sbjct: 304 VRDFLDLKKNSGEERRRAHDLFPALWINDLFMKRVQEDGIWTLFDPYEVKELTDLYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ E + K + +SA LW+++L FETG+P++ FKDA N +P +H G+
Sbjct: 364 EKRYLELEQDESITK----EVVSAKQLWKEVLRSYFETGNPFLCFKDAANRANPNRHAGV 419
Query: 364 IHSSNLCTEITLNTSKN------------------------EIGVCNLGSINLTLHMKNG 399
I SSNLCTEI NTS N + GV L +G
Sbjct: 420 IRSSNLCTEIFQNTSPNHYRMKIIFEDQSVTYFEEEEMVTVDSGVTKPAKKITALDTLDG 479
Query: 400 K------LDPI---------------------KLKKTIRIAMRMLDNVIDINYYAVKKAK 432
K DP+ + + + A+RMLDNVID+N+Y + K K
Sbjct: 480 KKIWMVEKDPVDGETAVCNLASVNLSKINTPEDIARVVPTAIRMLDNVIDLNFYPLGKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N + R +GLG+MG L I + S E D+ ME + YYA AS++LA EKG
Sbjct: 540 KTNEKSRSIGLGVMGEAQMLAEAGIEWGSSEHFHKIDEVMESVSYYAIKASSDLALEKGC 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y +++GS W +GI P D + KL+ +RG + + +W+ LR ++K GMRN
Sbjct: 600 YPNFEGSDWSKGIFPIDKANPEACKLV--DRGGLF-----GYTHDWEALREKVKNDGMRN 652
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS + G + +IEP Y+ + NLSG M
Sbjct: 653 GYLMAIAPTSSISILTGTTQAIEPVYKRKWYEENLSG----------------------M 690
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI--S 665
I + + + D Y +E+ ++ AG++RQKWIDQ QSLNI+I
Sbjct: 691 IPVV---------VPNLNPDTWAYYTPCYELDQRLLVRAGAIRQKWIDQGQSLNIFIRLD 741
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
SG+ L++ Y AW GLK+TYYLRS S
Sbjct: 742 KASGRYLNDIYMEAWKFGLKSTYYLRSQS 770
>gi|224372454|ref|YP_002606826.1| ribonucleotide-diphosphate reductase subunit alpha [Nautilia
profundicola AmH]
gi|223589714|gb|ACM93450.1| ribonucleoside-diphosphate reductase, alpha subunit [Nautilia
profundicola AmH]
Length = 812
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/768 (39%), Positives = 427/768 (55%), Gaps = 126/768 (16%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + V G KEYF K G ++L +F+L
Sbjct: 75 PNWNYVAARLFLYDLYHRVTGFTGYN-----HLKEYFQKGEEAG---RILLGLKEKFDLD 126
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ L PERDLQF YLG+K LYDRY + G IE+PQ FM +AM L+ NE+N E
Sbjct: 127 DLNAYLKPERDLQFTYLGIKTLYDRYIIKDRNGEPIELPQQLFMGVAMFLAQNETNYESI 186
Query: 124 -------------------AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD 164
A KFY+++S F M +TPTL N+ T R QLSSCY+ ++ D+
Sbjct: 187 PEEERANIPNDPKAIRGYWAKKFYDVISKFEVMVATPTLSNARTTRHQLSSCYVGSMNDN 246
Query: 165 LYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVN 224
+ GIF+ KE ALLSK+ GG+G D +++R+LGS I + GVIP+LK+ ND+A+AV+
Sbjct: 247 IEGIFDDFKEMALLSKFGGGIGWDVSRIRALGSFIDNHKNAAGGVIPWLKITNDIAIAVD 306
Query: 225 QGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTW 284
Q G RKGAI YLE WHMD+ +F++L+KN+G++RRR HD+ A+W+ DLFMKRV + + W
Sbjct: 307 QLGTRKGAIAVYLEPWHMDVLDFLDLKKNSGEERRRAHDLFPALWISDLFMKRVQEDALW 366
Query: 285 TLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHP 344
TLF PY+V DL + +G+EFE+ YI YEN + K + I A LW+KIL +ETG+P
Sbjct: 367 TLFDPYEVKDLTDLYGEEFEKRYIEYENDPNIAK----ETIKAKELWKKILLEYYETGNP 422
Query: 345 WITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKN--------EIGVCNL--------- 387
++ FKD N R+ H GII SSNLCTEI NT N E G N+
Sbjct: 423 FLCFKDNANRRNQNDHAGIIRSSNLCTEIFQNTEPNHYKVKVTFEDGSFNMYDEEEDVTV 482
Query: 388 --GSINLTLHMK---------------------NGKL--------------DPIKLKKTI 410
G + LT K NGK P K+K+ +
Sbjct: 483 EHGDVKLTKKAKKITSIDAINGKQVYIVEKVPVNGKTAVCNLASVNLSKVNTPEKIKEVV 542
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
+A+RMLDNVID+NYY V+K K +NL++R +GLG MG L +I + S+E +K D+
Sbjct: 543 PVAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQMLAEKQIFWGSEEHLKLIDE 602
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E I YYA S EL+EEKG Y ++GS W +GILP DS E + ++ ++ +
Sbjct: 603 VFEGISYYAIKTSAELSEEKGIYPEFEGSRWSKGILPIDSA----NEEAKRLVERDLFSA 658
Query: 531 L--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTE 588
+ +W+ LR ++KK GMRN +AIAPT++IS + G + +IEP Y+ + NLSG
Sbjct: 659 MQYDWEGLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPVYKRKWYEENLSGLIPV 717
Query: 589 INRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648
+ + + + Y A+E+ +++A +
Sbjct: 718 V-------------------------------VPNLSAETYMFYTPAYELDQTVLVKAAA 746
Query: 649 VRQKWIDQSQSLNIYISN--KSGKKLDETYKLAWLRGLKTTYYLRSIS 694
+RQKW+DQ QSLNI+I+ SG+ L+E Y L W GLK+ YYLRS S
Sbjct: 747 IRQKWVDQGQSLNIFITTDKASGRYLNEIYTLGWKLGLKSFYYLRSQS 794
>gi|88597697|ref|ZP_01100930.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|419654577|ref|ZP_14185499.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|419675420|ref|ZP_14204688.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 110-21]
gi|419689858|ref|ZP_14218079.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1893]
gi|88190001|gb|EAQ93977.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|380630460|gb|EIB48694.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|380651796|gb|EIB68322.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 110-21]
gi|380670259|gb|EIB85519.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1893]
Length = 789
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 425/752 (56%), Gaps = 104/752 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYK---EYFSKFINKGIDNKLLNPKLAEF 61
P ++ V ARL ++ + K+V G +Y EYF K +G ++L ++
Sbjct: 71 PNWTFVAARLFLFDLYKKVNGMN--------RYNHLCEYFEKGEKEG---RILLGLKEKY 119
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNR 120
+L L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N
Sbjct: 120 DLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNP 179
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
++ A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK
Sbjct: 180 QEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSCQEMALLSK 239
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+ GG+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E W
Sbjct: 240 FGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPW 299
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDI +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G
Sbjct: 300 HMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYG 359
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P H
Sbjct: 360 EAFEKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAH 415
Query: 361 VGIIHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGS 389
VGII SSNLCTEI NT N E G + L S
Sbjct: 416 VGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDS 475
Query: 390 IN------LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVK 429
I+ + + +GK L I L K + A+RMLDNVID+N+Y +
Sbjct: 476 IDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHR 535
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
K K +NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA E
Sbjct: 536 KVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALE 595
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
KG Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN
Sbjct: 596 KGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VP 696
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
NL D + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 697 NLSL-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 744 SGGYLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|419643362|ref|ZP_14175107.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni ATCC 33560]
gi|380622176|gb|EIB40943.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni ATCC 33560]
Length = 789
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 425/752 (56%), Gaps = 104/752 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYK---EYFSKFINKGIDNKLLNPKLAEF 61
P ++ V ARL ++ + K+V G +Y EYF K +G ++L ++
Sbjct: 71 PNWTFVAARLFLFDLYKKVNGMN--------RYNHLCEYFEKGEKEG---RILLGLKEKY 119
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNR 120
+L L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N
Sbjct: 120 DLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNP 179
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
++ A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK
Sbjct: 180 QEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSK 239
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+ GG+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E W
Sbjct: 240 FGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPW 299
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDI +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G
Sbjct: 300 HMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYG 359
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P H
Sbjct: 360 EAFEKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAH 415
Query: 361 VGIIHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGS 389
VGII SSNLCTEI NT N E G + L S
Sbjct: 416 VGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDS 475
Query: 390 IN------LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVK 429
I+ + + +GK L I L K + A+RMLDNVID+N+Y +
Sbjct: 476 IDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHR 535
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
K K +NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA E
Sbjct: 536 KVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLALE 595
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
KG Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN
Sbjct: 596 KGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VP 696
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
NL D + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 697 NLSL-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 744 SGGYLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|86153989|ref|ZP_01072191.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|85842527|gb|EAQ59740.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni HB93-13]
Length = 789
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 304/749 (40%), Positives = 426/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L +I+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGGYEKPAKKISTLDNIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN +A
Sbjct: 599 YEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
D + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|407941495|ref|YP_006857135.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni PT14]
gi|419633388|ref|ZP_14165825.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|419661668|ref|ZP_14191988.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|419676849|ref|ZP_14206012.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 87330]
gi|419678257|ref|ZP_14207320.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 87459]
gi|380612374|gb|EIB31902.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|380639468|gb|EIB56955.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|380655524|gb|EIB71837.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 87330]
gi|380661195|gb|EIB77110.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 87459]
gi|407905333|gb|AFU42162.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni PT14]
Length = 789
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 425/752 (56%), Gaps = 104/752 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYK---EYFSKFINKGIDNKLLNPKLAEF 61
P ++ V ARL ++ + K+V G +Y EYF K +G ++L ++
Sbjct: 71 PNWTFVAARLFLFDLYKKVNGMN--------RYNHLCEYFEKGEKEG---RILLGLKEKY 119
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNR 120
+L L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N
Sbjct: 120 DLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNP 179
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
++ A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK
Sbjct: 180 QEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSK 239
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+ GG+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E W
Sbjct: 240 FGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPW 299
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDI +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G
Sbjct: 300 HMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYG 359
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P H
Sbjct: 360 EAFEKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAH 415
Query: 361 VGIIHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGS 389
VGII SSNLCTEI NT N E G + L S
Sbjct: 416 VGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDRGYEKPAKKISTLDS 475
Query: 390 IN------LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVK 429
I+ + + +GK L I L K + A+RMLDNVID+N+Y +
Sbjct: 476 IDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHR 535
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
K K +NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA E
Sbjct: 536 KVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALE 595
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
KG Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN
Sbjct: 596 KGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VP 696
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
NL D + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 697 NLSL-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 744 SGGYLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|326435406|gb|EGD80976.1| Rrm1 protein [Salpingoeca sp. ATCC 50818]
Length = 779
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 274/640 (42%), Positives = 398/640 (62%), Gaps = 23/640 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N + ++ ++ ERD FN+ G K L Y L + G E PQ FMR+A+G+ + +
Sbjct: 127 NKEVYNSHIIFERDFNFNFFGFKTLERSYLLKMNGKVAERPQHMFMRVAIGMHGEDVD-- 184
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YN +S F ++PTLFNSGT QLSSC+L T+ DD + GI++++K A++SK
Sbjct: 185 -AAIETYNYMSEGFFTHASPTLFNSGTPIPQLSSCFLLTMKDDSIEGIYDTLKTCAMISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 244 TAGGIGLSVHNIRASGSYIAGTNGHSNGLVPMLRVFNNTARYVDQGGNKRPGAFAVYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +F+EL+KNTG + +R D+ A+WVPDLFMKRV WTL P++ P L + +
Sbjct: 304 WHADIFDFLELKKNTGVEEQRARDLFFALWVPDLFMKRVEANEEWTLMCPHECPGLSDTY 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE Y YE + K G+ KK+SA LW IL ETG P++ +KDACN +S Q+
Sbjct: 364 GDEFERLYEKYEAEGK-GR----KKVSASKLWFAILDAQTETGTPYMLYKDACNKKSNQK 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
++G IHSSNLCTEI +S +E+ VCNLGSI L + + D KL + ++ R L+
Sbjct: 419 NLGTIHSSNLCTEIIEYSSPDEVAVCNLGSIALNKFVGDKTFDYKKLHEVTKVLTRNLNK 478
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+IDINYY V +A+ SN+RHRP+G+G+ G D +M++P+ S EA + + E I + A
Sbjct: 479 IIDINYYPVPEARKSNMRHRPIGIGVQGLADAFILMRLPFDSDEAREVNRKIFETIYHGA 538
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
ASTE+A +G Y +++GS +GIL D V ++ +W+ LR R
Sbjct: 539 LEASTEIASVEGPYETFEGSPTSEGILQFD------------MWDVKPTDLWDWESLRER 586
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+KK G+RNS VA PTA+ + I+G + SIEP N++ + LSGEF +N++L+K+L +
Sbjct: 587 VKKDGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNKHLLKDLVE 646
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLW + + + +G++ +I IPDD++ +Y T +E+S +I+ + R +IDQSQS
Sbjct: 647 MGLWSDEVKDQIILNNGSIQKIEGIPDDIKALYKTVWELSQRTLIDMAADRGAFIDQSQS 706
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
N++IS+ + KL + AW RGLKT YYLRS +A A
Sbjct: 707 FNVHISDPNFGKLTSMHFYAWKRGLKTGMYYLRSRAATNA 746
>gi|424849148|ref|ZP_18273615.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni D2600]
gi|356487592|gb|EHI17535.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni D2600]
Length = 789
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 425/752 (56%), Gaps = 104/752 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYK---EYFSKFINKGIDNKLLNPKLAEF 61
P ++ V ARL ++ + K+V G +Y EYF K +G ++L ++
Sbjct: 71 PNWTFVAARLFLFDLYKKVNGMN--------RYNHLCEYFEKGEKEG---RILLGLKEKY 119
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNR 120
+L L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N
Sbjct: 120 DLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNP 179
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
++ A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK
Sbjct: 180 QEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSK 239
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+ GG+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E W
Sbjct: 240 FGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPW 299
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDI +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G
Sbjct: 300 HMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYG 359
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P H
Sbjct: 360 EAFEKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAH 415
Query: 361 VGIIHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGS 389
VGII SSNLCTEI NT N E G + L S
Sbjct: 416 VGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGGYEKPAKKISTLDS 475
Query: 390 IN------LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVK 429
I+ + + +GK L I L K + A+RMLDNVID+N+Y +
Sbjct: 476 IDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHR 535
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
K K +NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA E
Sbjct: 536 KVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALE 595
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
KG Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN
Sbjct: 596 KGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VP 696
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
NL D + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 697 NLSL-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 744 SGGYLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|419605930|ref|ZP_14140314.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 9860]
gi|380587519|gb|EIB08709.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 9860]
Length = 789
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 301/746 (40%), Positives = 426/746 (57%), Gaps = 98/746 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 VSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SI+
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDSIDG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQISFEAINASSNLAIEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + N SE +W KLR ++K+ GMRN +A
Sbjct: 599 YPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSEC-DWDKLREKVKEDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
+ + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------ETWQYYTPAYELDQRILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISAN 696
L++ Y+LAW G+K+TYYLRS S +
Sbjct: 747 YLNDIYQLAWELGVKSTYYLRSESPD 772
>gi|419624428|ref|ZP_14157535.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|419627103|ref|ZP_14160015.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|419636632|ref|ZP_14168824.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|419655066|ref|ZP_14185928.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|419663538|ref|ZP_14193733.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|419666219|ref|ZP_14196257.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|419688969|ref|ZP_14217278.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1854]
gi|424846516|ref|ZP_18271110.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni NW]
gi|356485814|gb|EHI15801.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni NW]
gi|380598571|gb|EIB18967.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|380607295|gb|EIB27167.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|380617048|gb|EIB36231.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|380637648|gb|EIB55265.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|380641587|gb|EIB58922.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|380642754|gb|EIB60007.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|380664237|gb|EIB79843.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
jejuni subsp. jejuni 1854]
Length = 789
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 425/752 (56%), Gaps = 104/752 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYK---EYFSKFINKGIDNKLLNPKLAEF 61
P ++ V ARL ++ + K+V G +Y EYF K +G ++L ++
Sbjct: 71 PNWTFVAARLFLFDLYKKVNGMN--------RYNHLCEYFEKGEKEG---RILLGLKEKY 119
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNR 120
+L L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N
Sbjct: 120 DLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNP 179
Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
++ A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK
Sbjct: 180 QEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSK 239
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+ GG+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E W
Sbjct: 240 FGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPW 299
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HMDI +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G
Sbjct: 300 HMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYG 359
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+ FE+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P H
Sbjct: 360 EAFEKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAH 415
Query: 361 VGIIHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGS 389
VGII SSNLCTEI NT N E G + L S
Sbjct: 416 VGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGGYEKPAKKISTLDS 475
Query: 390 IN------LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVK 429
I+ + + +GK L I L K + A+RMLDNVID+N+Y +
Sbjct: 476 IDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHR 535
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
K K +NL+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA E
Sbjct: 536 KVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALE 595
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
KG Y ++GS W +GI P D K + + SE +W KLR ++KK GMRN
Sbjct: 596 KGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VP 696
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
NL D + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 697 NLSL-------------DTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 744 SGGYLNEIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|419609832|ref|ZP_14143909.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H8]
gi|380591212|gb|EIB12198.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H8]
Length = 789
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 302/749 (40%), Positives = 425/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 VSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTQDLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD N +P HVGI
Sbjct: 363 EKRYEEYEKDESIAK----EIVEAKELWKKILLNYFETGLPFLCFKDNANKANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L S N
Sbjct: 419 IRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIIDGGYEKPAKKISTLDSFNG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKSDGKTAVCNLASINLSKVNTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L +I + S E + D+ ME I Y A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEKISYEAINASSNLAIEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + N SE +W KLR ++K+ GMRN +A
Sbjct: 599 YPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSEC-DWDKLREKVKEDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
+ + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------ETWQYYTPAYELDQRILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L++ Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNDIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|268678696|ref|YP_003303127.1| ribonucleoside-diphosphate reductase subunit alpha
[Sulfurospirillum deleyianum DSM 6946]
gi|268616727|gb|ACZ11092.1| ribonucleoside-diphosphate reductase, alpha subunit
[Sulfurospirillum deleyianum DSM 6946]
Length = 788
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 305/747 (40%), Positives = 413/747 (55%), Gaps = 105/747 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + +V G +KEYF + +G L K ++L+
Sbjct: 72 PNWTFVAARLFLYDLYHKVSG-----FTGYGSFKEYFERCEKEGRIALGLKEK---YDLA 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L + PERDLQFNYLG+K L+DRY + + EG IE+PQ FM I+M L+ NE N +
Sbjct: 124 DLEAYIQPERDLQFNYLGIKTLHDRYLIKNKEGKPIELPQHMFMAISMFLAQNELNSQDW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE +LLSK+ G
Sbjct: 184 AKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYKEMSLLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW VRS+G I G + GVIPFLK+ ND+AVAV+Q G RKGAI YLE WHMD
Sbjct: 244 GIGWDWNLVRSMGGMIDGHKNAAGGVIPFLKITNDIAVAVDQLGTRKGAIAVYLEPWHMD 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++L+KN+G++RRR H++ A+W+ DLFMKRV + WTLF P PDL +G+EF
Sbjct: 304 ISDFLDLKKNSGEERRRAHELFPALWINDLFMKRVESNAMWTLFDPAQTPDLCEVYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE+ + K + I A LW+KIL+ FE+G P++ FKD+ N +P H GI
Sbjct: 364 ERRYSAYEHDESVTK----EYILAKELWKKILTSYFESGSPFLCFKDSANKVNPNDHAGI 419
Query: 364 IHSSNLCTEITLNTSKNEI-------------------------------GVCNLGSIN- 391
I SSNLCTEI NT N + L SI+
Sbjct: 420 IRSSNLCTEIFQNTQPNHYKIKIVFNDQTFITYEERDLVKVDSGITKEAKKITALDSIDG 479
Query: 392 -----LTLHMKNGK----------LDPIKLKKTIR----IAMRMLDNVIDINYYAVKKAK 432
+ M GK L I K+ I IA+RMLDNVID+N+Y K K
Sbjct: 480 KDIFIVEKEMIEGKTAVCNLASVNLSKIHTKEDIERVLPIAIRMLDNVIDLNFYPHAKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
++NL+ R VGLG+MG L I + S E D+ ME I Y A AS+ LA EKG
Sbjct: 540 HTNLKSRAVGLGVMGEAQMLAEKGIEWGSYEHFSKIDEVMEAISYNAILASSNLAIEKGV 599
Query: 493 YSSYDGSLWDQGILPQDSLKLLEK---ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
Y + GS W +GI P D+ K +RG + +W+ LR ++K GMRN
Sbjct: 600 YPEFSGSKWSKGIFPIDTANEEAKKLVDRGGLF-----GYMYDWESLREKVKNNGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + L W
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGMIPVVAPNL-----NPNTW------ 703
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
Y A+E+ +++AG++RQKWIDQ QSLNI+I+
Sbjct: 704 --------------------TFYTPAYELDQRILVKAGAIRQKWIDQGQSLNIFITLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSIS 694
SGK L++ Y LAW G+K+TYYLRS S
Sbjct: 744 SGKYLNDIYMLAWKLGIKSTYYLRSQS 770
>gi|237751458|ref|ZP_04581938.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
bilis ATCC 43879]
gi|229372824|gb|EEO23215.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
bilis ATCC 43879]
Length = 785
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 308/744 (41%), Positives = 427/744 (57%), Gaps = 103/744 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + V + +EYF +G KLL +F+L
Sbjct: 74 PNWTFVAARLFLYDLYHRV-----SRFTGYRHLREYFEVGEREG---KLLKGLKEKFDLD 125
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
LL + ++ +RDLQFNYLG+K LYDRY L G IE+PQ FM IAM L+ NE + +
Sbjct: 126 LLDSKIVADRDLQFNYLGIKTLYDRYLLKDSNGKPIELPQHMFMAIAMFLAQNEKDCNEW 185
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
AIKFY+ LS+F MC+TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 186 AIKFYDALSNFEVMCATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 245
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR++GS I G + G+IPFLK+ ND+A+AV+Q G RKGAI Y+E WH D
Sbjct: 246 GIGWDFSQVRTIGSFIDGHKNAAGGIIPFLKITNDIAIAVDQLGTRKGAIATYIEIWHND 305
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFIELRKN+G++RRRTHD+ A+W+ DLFM+RV++ S W+ F PY +L N +G EF
Sbjct: 306 VTEFIELRKNSGEERRRTHDLFPALWICDLFMERVLQDSQWSFFDPYTCRELTNLYGDEF 365
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
++ Y E + + + A LW+KIL+ FETG P++ FKD+ N +P H GI
Sbjct: 366 KKRYEELEKMPNM----VVSSMPAKDLWKKILNSYFETGLPFLCFKDSANRANPNAHSGI 421
Query: 364 IHSSNLCTEITLNTSKN------------------------EIGVC----NLGSINL--- 392
I SSNLCTEI NT + + GV L SI+
Sbjct: 422 IRSSNLCTEIFQNTEPSHYRVEVEFDDGERIYFEESEEVVVDSGVTKRANKLTSIDSLKG 481
Query: 393 -----TLHMKNG------KLDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T ++ G L I L K + IA+RMLDNVID+N+Y +K K
Sbjct: 482 KKIFNTQRVQTGGQTAVCNLASINLSKIHTHEDIERIVPIAVRMLDNVIDLNFYPSRKVK 541
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N+ +R +GLG+MG + L + + S+ D ME I Y A AS LA+E+G
Sbjct: 542 VTNMANRAIGLGVMGEAELLASKLVLWGSEAHFSLIDSIMEAISYNAIKASAMLAKERGA 601
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y +Y+GS W +GI P D K EK + V +W+ LR+ +K G+RN +A
Sbjct: 602 YPTYEGSNWSKGIFPID--KANEKAKAI----VERIFHYDWESLRDLVKSEGIRNGYLMA 655
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + + NLSG ++K S++ NL
Sbjct: 656 IAPTSSISILVGTTQTIEPIYKQIWHEENLSG--------MIK----------SVVPNL- 696
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI--SNKSGK 670
L I+ Y +A+ I+ + ++ A +VRQKWIDQ QSLNI+I + SGK
Sbjct: 697 ----TLETIN--------FYPSAYSINQHDLVRAAAVRQKWIDQGQSLNIFIRLDSVSGK 744
Query: 671 KLDETYKLAWLRGLKTTYYLRSIS 694
+L E Y LAW GLK+TYYLRS S
Sbjct: 745 QLHEIYMLAWSLGLKSTYYLRSQS 768
>gi|386748047|ref|YP_006221255.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cetorum MIT 99-5656]
gi|384554289|gb|AFI06045.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cetorum MIT 99-5656]
Length = 788
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 310/771 (40%), Positives = 428/771 (55%), Gaps = 120/771 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L + IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDTDNNPIELPQHMFMSIAMFLAQNEEEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G+EF
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLAELYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD---ACN------- 353
E+ Y+ YE + K + I+A LW+K+L FE G P++ FKD CN
Sbjct: 364 EKRYLEYEKDPTIIK----EYINAKDLWKKVLMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 354 IRSPQQHVGIIHSSN-----------------------LCTEITLNTSKNEI-------- 382
IRS I ++ + T+ + + N++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQVEYTDGTMEFFEEKELVTTDSHITKTANKLTSTDTLKG 479
Query: 383 ---------------GVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYA 427
VCNL SINL+ N + D +K+ + I +R+LDNVID+N+Y
Sbjct: 480 KQIYIATKIAKDGQTAVCNLASINLS--KINTEED---IKRVVPIMVRLLDNVIDLNFYP 534
Query: 428 VKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELA 487
+K K +NL++R +GLG+MG L KI + SKE ++ D ME I YYA S LA
Sbjct: 535 NRKVKATNLQNRAIGLGVMGEAQMLAENKIAWGSKEHLEKIDSLMEQISYYAIGTSANLA 594
Query: 488 EEKGRYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542
+EKG Y ++GS W +GI P D +LKL ERG + + +W+ LR ++K
Sbjct: 595 KEKGVYKDFEGSSWSKGIFPIDEANKEALKL--TERGL------FNYTCDWQSLREKVKT 646
Query: 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGL 602
GMRN +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 647 NGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------- 693
Query: 603 WDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNI 662
+ NL N Y +A++I +I+ +VRQKWIDQ QS N+
Sbjct: 694 -----VPNLSLETWNF-------------YTSAYDIDAKDLIKVAAVRQKWIDQGQSTNV 735
Query: 663 Y--ISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
+ I N SGK L E Y LAW GLK+TYYLRS S +KS + ++ N
Sbjct: 736 FLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPTLDEKSVLDRSVECHN 786
>gi|57169016|ref|ZP_00368144.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
gi|305432548|ref|ZP_07401709.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
coli JV20]
gi|419535775|ref|ZP_14075267.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 111-3]
gi|419538267|ref|ZP_14077627.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 90-3]
gi|419540040|ref|ZP_14079282.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli Z163]
gi|419541853|ref|ZP_14080990.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2548]
gi|419545050|ref|ZP_14083981.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2553]
gi|419546247|ref|ZP_14085006.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2680]
gi|419548209|ref|ZP_14086839.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2685]
gi|419551015|ref|ZP_14089488.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2688]
gi|419552507|ref|ZP_14090811.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2692]
gi|419555135|ref|ZP_14093242.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2698]
gi|419557174|ref|ZP_14095128.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 84-2]
gi|419557476|ref|ZP_14095384.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 80352]
gi|419559681|ref|ZP_14097335.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 86119]
gi|419561769|ref|ZP_14099300.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1091]
gi|419563706|ref|ZP_14101101.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1098]
gi|419565761|ref|ZP_14103031.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1148]
gi|419567612|ref|ZP_14104767.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1417]
gi|419569602|ref|ZP_14106662.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 7--1]
gi|419571433|ref|ZP_14108386.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 132-6]
gi|419573672|ref|ZP_14110465.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1891]
gi|419575208|ref|ZP_14111903.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1909]
gi|419577438|ref|ZP_14113992.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 59-2]
gi|419578907|ref|ZP_14115329.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1948]
gi|419581194|ref|ZP_14117501.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1957]
gi|419584042|ref|ZP_14120193.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1961]
gi|419586075|ref|ZP_14122097.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 202/04]
gi|419587467|ref|ZP_14123393.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 67-8]
gi|419591469|ref|ZP_14126817.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 37/05]
gi|419593928|ref|ZP_14129125.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 9854]
gi|419594362|ref|ZP_14129491.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23336]
gi|419597060|ref|ZP_14132050.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23341]
gi|419598875|ref|ZP_14133747.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23342]
gi|419600253|ref|ZP_14135014.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23344]
gi|419602200|ref|ZP_14136781.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 151-9]
gi|419604276|ref|ZP_14138746.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 9853]
gi|419608427|ref|ZP_14142617.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H6]
gi|419612880|ref|ZP_14146744.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H9]
gi|419616308|ref|ZP_14149957.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli Z156]
gi|57019561|gb|EAL56251.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
gi|304444259|gb|EFM36911.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
coli JV20]
gi|380517732|gb|EIA43839.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli Z163]
gi|380518360|gb|EIA44456.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 90-3]
gi|380519725|gb|EIA45787.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 111-3]
gi|380522661|gb|EIA48331.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2680]
gi|380524080|gb|EIA49707.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2553]
gi|380524205|gb|EIA49823.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2548]
gi|380527646|gb|EIA53002.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2685]
gi|380529278|gb|EIA54453.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2688]
gi|380530682|gb|EIA55743.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2698]
gi|380531263|gb|EIA56292.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 2692]
gi|380533838|gb|EIA58715.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 84-2]
gi|380537988|gb|EIA62515.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 86119]
gi|380541920|gb|EIA66165.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 80352]
gi|380542973|gb|EIA67198.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1091]
gi|380543555|gb|EIA67741.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1098]
gi|380547756|gb|EIA71672.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1417]
gi|380548294|gb|EIA72202.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1148]
gi|380549238|gb|EIA73117.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 7--1]
gi|380551049|gb|EIA74668.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1891]
gi|380553582|gb|EIA77090.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 132-6]
gi|380554084|gb|EIA77571.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1909]
gi|380557447|gb|EIA80661.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 59-2]
gi|380558394|gb|EIA81573.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1948]
gi|380559735|gb|EIA82872.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1957]
gi|380560935|gb|EIA83935.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 202/04]
gi|380561425|gb|EIA84363.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 1961]
gi|380564499|gb|EIA87304.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 67-8]
gi|380568060|gb|EIA90543.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 37/05]
gi|380568290|gb|EIA90766.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 9854]
gi|380574575|gb|EIA96675.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23341]
gi|380576319|gb|EIA98376.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23336]
gi|380576614|gb|EIA98666.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23342]
gi|380580353|gb|EIB02107.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 9853]
gi|380581645|gb|EIB03364.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 151-9]
gi|380583153|gb|EIB04726.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli LMG 23344]
gi|380585384|gb|EIB06738.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H6]
gi|380589333|gb|EIB10399.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H9]
gi|380595975|gb|EIB16693.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli Z156]
Length = 789
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 302/749 (40%), Positives = 425/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 VSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTQDLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD N +P HVGI
Sbjct: 363 EKRYEEYEKDESIAK----EIVEAKELWKKILLNYFETGLPFLCFKDNANKANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L S N
Sbjct: 419 IRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIIDGGYEKPAKKISTLDSFNG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L +I + S E + D+ ME I Y A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEKISYEAINASSNLAIEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + N SE +W KLR ++K+ GMRN +A
Sbjct: 599 YPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSEC-DWDKLREKVKEDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
+ + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------ETWQYYTPAYELDQRILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L++ Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNDIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|383853838|ref|XP_003702429.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Megachile rotundata]
Length = 821
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 290/740 (39%), Positives = 431/740 (58%), Gaps = 31/740 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y+ + AR+ + + KE + I +E + I K N + + N
Sbjct: 76 KHPDYAVLAARIAVSNLHKETKKSFSEVIHDLYHVQEQYLNKPRPVISEKYYN--IIQNN 133
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
S L++A++ +RD +NY G K L Y L I G +E PQ MR+A ++++ + EK
Sbjct: 134 ASKLNSAIIYDRDFSYNYFGFKTLERSYLLKIHGKVVERPQHMLMRVA--VAIHGEDIEK 191
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKENALLSKY 181
AI+ YN LS F ++PTLF++ T+ Q+SSC+L S D + GI++++K AL+SK
Sbjct: 192 -AIETYNFLSERYFTHASPTLFSACTVTQQMSSCFLLSMTEDSIEGIYDTLKRCALISKS 250
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETW 240
AGG+G + +R+ G+PI GT G S G++P L+V N+ A V+QGG KR GA YLE W
Sbjct: 251 AGGIGLNVHCIRARGTPIAGTLGVSNGLVPMLRVYNNTARYVDQGGNKRPGAFAVYLEPW 310
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H DI EF++L+KNTG + R ++ A+W+PDLFMKRV++ WTL P++ P L + +G
Sbjct: 311 HADIFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLENGVWTLMCPHESPGLADVWG 370
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE Y YEN+ + + +I A LW IL ETG P++ +KD CN +S QQ+
Sbjct: 371 DEFETLYTRYENEKRFKR-----QIQARDLWTAILIAQVETGTPYMLYKDHCNRKSNQQN 425
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSI--NLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
+G I SSNLCTE+ +S +E+ VCNL SI N+ ++ N D KLKK +I LD
Sbjct: 426 IGTIKSSNLCTEVVQYSSADEVAVCNLASIAVNMFVNSSNKTFDFQKLKKVTKIVTCNLD 485
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
VID+NYY + +AK SN RHRP+G+GI G D +M+ P+ S+EA K Q E + Y
Sbjct: 486 KVIDVNYYPIPEAKKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYG 545
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS ELAEEKG Y +Y+GS +GIL D V ++ +W L+
Sbjct: 546 ALEASCELAEEKGTYETYEGSPVSKGILQYD------------MWNVTPTDLWDWAALKE 593
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+++L
Sbjct: 594 KIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLRDLT 653
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++ LWDE+M + +G++ I RIP DL+ +Y T +EIS +++ + R +IDQSQ
Sbjct: 654 ERDLWDENMKNEIIANNGSIQDIERIPSDLKMLYKTVWEISQKVVLKMAADRGAFIDQSQ 713
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISI 717
SLN++++ + +KL + W GLKT YYLR+ A A + +D L +
Sbjct: 714 SLNVHMAKPTTEKLTSMHFYGWQMGLKTGMYYLRTKPAANA----LQFTVDKSKLRSATS 769
Query: 718 KGYNKNLQEIKNNKKCLINS 737
N++L N + +NS
Sbjct: 770 TPANQSLNLESGNDEGYMNS 789
>gi|257461040|ref|ZP_05626138.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
gracilis RM3268]
gi|257441414|gb|EEV16559.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
gracilis RM3268]
Length = 790
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 301/756 (39%), Positives = 421/756 (55%), Gaps = 106/756 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + +V G ++YF++ G +++ +++L
Sbjct: 71 PNWTFVAARLFLYDLYHKVTGFSGYN-----SLEDYFARGEAAG---RIMLGLKEKYDLE 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ L P+RDLQFNYLG+K LYDRY + + G IE+PQ FM IAM L+ NE + +
Sbjct: 123 DLNSYLQPQRDLQFNYLGIKTLYDRYLIKDKSGAPIELPQQMFMAIAMFLAQNELDCQSW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+ G
Sbjct: 183 AKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW +VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +F++LRKN+G++RRR H++ A+W+ DLFMKR+ WTLF P +V DL + +G EF
Sbjct: 303 VSDFLDLRKNSGEERRRAHEIFPALWINDLFMKRLQSGGKWTLFDPAEVSDLSDLYGAEF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE K+ K + K LW+KIL+ FETG P++ FKD N +P H G+
Sbjct: 363 EARYEQYEADDKISKSTILAK----ELWKKILTSYFETGMPFLCFKDNANRINPNAHQGL 418
Query: 364 IHSSNLCTEITLNTSKN------------------------EIGVCNLGSINLTLHMKNG 399
I SSNLCTEI NT+ N + G+ L G
Sbjct: 419 IRSSNLCTEIFQNTAPNHYKIKVVFADGSERLFEENEDVRTDAGIVKKAKKITALDTLGG 478
Query: 400 K------------------LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
K L + L K + IA+RMLDNVID+N+Y K K
Sbjct: 479 KEIFIVEKGCSEGATAVCNLASVNLSKINSREEIARVMPIAVRMLDNVIDLNFYPHAKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
++NL+ R +GLG+MG L + + S E + D+ ME + + A AS+ LA EKGR
Sbjct: 539 HTNLKTRAIGLGVMGEAQMLAERGVKWGSYEHFELIDRIMENVSFNAIKASSNLAVEKGR 598
Query: 493 YSSYDGSLWDQGILPQD----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNS 548
Y + GS W +GI P D + K L K RG + + S +W LR ++K+ GMRN
Sbjct: 599 YPDFAGSKWSEGIFPIDLANENAKALVK-RGGLFEQ----SSCDWDGLREKVKRDGMRNG 653
Query: 549 NCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMI 608
+AIAPT++IS ++G + +IEP Y+ + NLSG + V L K W
Sbjct: 654 YLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV----VPNLSPK-TW----- 703
Query: 609 ANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--N 666
+ Y A+E+ +++AG++RQKWIDQ QSLNI++S
Sbjct: 704 ---------------------QAYVPAYELDQRLLVKAGAIRQKWIDQGQSLNIFMSLDK 742
Query: 667 KSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
SG L E Y LAW GLK+TYYLRS S + K +N
Sbjct: 743 ASGGYLSEIYTLAWQLGLKSTYYLRSESPDSEKLNN 778
>gi|146298284|ref|YP_001192875.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
johnsoniae UW101]
gi|146152702|gb|ABQ03556.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
johnsoniae UW101]
Length = 797
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 290/755 (38%), Positives = 445/755 (58%), Gaps = 41/755 (5%)
Query: 5 PVYSQVTARLL---MYCIQKEVFGKEIKQIDIPIKYKEYFSKFIN--KGIDNKLLNP--- 56
P Y+Q+ AR+ ++ K+ F + +K + ++N G D L+
Sbjct: 71 PDYAQLAARVAISNLHSNTKKSFSETMKDM----------YNYVNPRNGQDAPLIADDVY 120
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N + L + ++ RD ++Y G K L Y L I G +E PQ MR+++G+ L+
Sbjct: 121 KVIQENAAFLDSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLD 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ K I+ Y+L+S F +TPTLFN+GT + Q+SSC+L + DD + GI++++K+
Sbjct: 181 DL---KSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+
Sbjct: 238 AKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+ETWH DI +F++L+KNTG + R D+ A+W DLFMKRV + STWTL P + P
Sbjct: 298 IYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDSTWTLMCPNECPG 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L++ +G EFE Y YE + K G+ K I A LW KIL ETG P++ +KDA N
Sbjct: 358 LYDVYGDEFEALYTDYEFRGK-GR----KTIRARELWEKILESQIETGTPYMLYKDAANR 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S +++G I SSNLCTEI TSK+EI VCNL SI+L + + NG+ D L +
Sbjct: 413 KSNHKNLGTIRSSNLCTEIMEFTSKDEIAVCNLASISLPMFIDNGEFDHQALYNVTKRVT 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID NYY VK+A+ SN+RHRPVGLG+ G D ++++P++S EA K + E
Sbjct: 473 RNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKKLNQEIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ + A AS E+A+E+G YS+++GS QG + + ++E ++ +W
Sbjct: 533 LYFAAVTASMEMAKEEGPYSTFEGSPMSQGEFQYNMWGMKDEELSGRW---------DWA 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR + + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+
Sbjct: 584 SLRKEVVEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L K GLW+E + + +G++ I +IP DL+ +Y T +E+S II+ R +I
Sbjct: 644 EDLVKLGLWNEDLKQEIMRHNGSVQNIDKIPQDLKDLYKTVWEMSMKDIIDMSRQRGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLD 713
DQSQSLN+++ + + KL + AW GLKT YYLR+ +A A K F + D
Sbjct: 704 DQSQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIK--FTLNNDKKEET 761
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
S+ + + +++ K L+ ++ D +CE C
Sbjct: 762 APSLVQETEAIS-VEDYKAMLLKAQAADPEDCEMC 795
>gi|419588825|ref|ZP_14124641.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 317/04]
gi|380569107|gb|EIA91556.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli 317/04]
Length = 789
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 302/749 (40%), Positives = 425/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 VGDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTQDLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD N +P HVGI
Sbjct: 363 EKRYEEYEKDESIAK----EIVEAKELWKKILLNYFETGLPFLCFKDNANKANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L S N
Sbjct: 419 IRSSNLCTEIFQNTEPNYYKIKIVFENGDEKHFDEEERVIIDGGYEKPAKKISTLDSFNG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + A+RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L +I + S E + D+ ME I Y A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEKISYEAINASSNLAIEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + N SE +W KLR ++K+ GMRN +A
Sbjct: 599 YPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSEC-DWDKLREKVKEDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
+ + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------ETWQYYTPAYELDQRILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L++ Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNDIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|420531167|ref|ZP_15029542.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-28b]
gi|393139193|gb|EJC39574.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
pylori Hp P-28b]
Length = 788
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 307/767 (40%), Positives = 428/767 (55%), Gaps = 112/767 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + D++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTSDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKN----EIGVCNLGSINL--------------------------- 392
I SSNLCTEI NT+ N +I + G+I
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTD-GAIEFFEEKELVTTDSDITKYANKLTSTDVLK 478
Query: 393 -------TLHMKNGK----------LDPIKLKKTIRIAMRMLDNVID----INYYAVKKA 431
T K+G+ L I ++ I+ + ++ ++D +N+Y +K
Sbjct: 479 GKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKV 538
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 539 KATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKG 598
Query: 492 RYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMR
Sbjct: 599 VYKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMR 650
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 651 NGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV----------------- 693
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--I 664
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 -VPNLNLETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRI 739
Query: 665 SNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 740 ENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>gi|348534733|ref|XP_003454856.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Oreochromis niloticus]
Length = 793
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 298/753 (39%), Positives = 440/753 (58%), Gaps = 38/753 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF ++ + Y +K + + L+ LA
Sbjct: 70 KYPDYAILAARIAVSNLHKETKKVFSDVMEDL---YNYINPLNKRHSPMVSKDTLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L I G E PQ MR+A+G+ +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVAVGIHGTDI- 183
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
+ AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K AL+
Sbjct: 184 --EAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKHCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +RS GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRSTGSYIAGTNGCSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH D+ +F+EL+KNTG + +R D+ A+W+PDLFMKRV W+L P D P L
Sbjct: 302 EPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVENNEDWSLMCPADCPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFEE Y YE + ++ ++ + A LW I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFEELYTRYEREGRVKRV-----VKAQQLWYAIIESQTETGTPYMVYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL SI L +++ + D KL ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPERTYDFKKLAYVTKVIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VIDINYY V++A+ SN+RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKVIDINYYPVEEARRSNMRHRPIGIGVQGLADAFILMRYPFESPEAQLLNIQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA E G Y +Y+GS +GIL D + EK ++ +WK L
Sbjct: 537 YAALEASCELAAELGTYETYEGSPVSKGILQYD---MWEK---------TPTDLWDWKLL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIE N++ + LSGEF +N +L+K+
Sbjct: 585 KEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M L +G++ I+ IPDDL+++Y T +EIS +++ + R +IDQ
Sbjct: 645 LTERGLWNEEMKNQLIAHNGSIQNINEIPDDLKQLYKTVWEISQKTVLKMAADRGAYIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLNI+I+ + KL + W +GLKT YYLR+ A A F + + +
Sbjct: 705 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA--ANPIQFTLNKEKLK---- 758
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ + QEIK K + + + +EC C
Sbjct: 759 EAQPATSSEQEIKERNKAAMVCSLENKDECLMC 791
>gi|71895081|ref|NP_001026008.1| ribonucleoside-diphosphate reductase large subunit [Gallus gallus]
gi|53127690|emb|CAG31174.1| hypothetical protein RCJMB04_2p9 [Gallus gallus]
Length = 790
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 293/750 (39%), Positives = 440/750 (58%), Gaps = 35/750 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y+ + AR+ + + KE +D Y + + I + L+ LA N
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVMDDLYNYINPHNGKHSPMISKETLDIVLA--N 127
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
L++A++ +RD +NY G K L Y L I E PQ MR+A+G+ N+ +
Sbjct: 128 KDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVAVGIHKNDID--- 184
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKY 181
AI+ YNLLS F ++PTLFN+GT R +LSSC+L + DD + GI++++K+ AL+SK
Sbjct: 185 AAIETYNLLSERWFTHASPTLFNAGTNRPRLSSCFLLCMKDDSIEGIYDTLKQCALISKS 244
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETW 240
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE W
Sbjct: 245 AGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPW 304
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +G
Sbjct: 305 HLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWG 364
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+EFE+ Y YE Q ++ ++ + A LW I+ ETG P++ +KD+CN +S QQ+
Sbjct: 365 EEFEKLYESYEKQGRVRRV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQN 419
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRMLDN 419
+G I SNLCTEI TSK+E+ VCNL SI L +++ + D KL + ++ +R L+
Sbjct: 420 LGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFKKLAEVTKVIVRNLNK 479
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+IDINYY V +A+ SN RHRP+G+G+ G D +M+ P+ S EA + Q E I Y A
Sbjct: 480 IIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQIFETIYYGA 539
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS ELAE++G Y +Y+GS +GIL D V S+ +WK L+ +
Sbjct: 540 LEASCELAEQQGPYETYEGSPVSKGILQYD------------MWNVTPSDLWDWKALKEK 587
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I K+G+RNS ++ PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L +
Sbjct: 588 IAKYGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTE 647
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
+GLW+E M + +G++ IS IP DL+++Y T +EIS +++ + R +IDQSQS
Sbjct: 648 RGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGAFIDQSQS 707
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
LNI+I+ + KL + W +GLKT YYLR+ A A F L++ ++
Sbjct: 708 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA--ANPIQF-------TLNKEKLR 758
Query: 719 GYNKNLQEIKNNKKCLINSEINDVNECESC 748
K +E K K + + + +EC C
Sbjct: 759 EREKASEEEKERNKAAMVCSLENRDECMMC 788
>gi|419614904|ref|ZP_14148671.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H56]
gi|380592074|gb|EIB12996.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
coli H56]
Length = 789
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 301/749 (40%), Positives = 424/749 (56%), Gaps = 98/749 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF K +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFEKGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 VSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTQDLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD N +P HVGI
Sbjct: 363 EKRYEEYEKDESIAK----EIVEAKELWKKILLNYFETGLPFLCFKDNANKANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L S N
Sbjct: 419 IRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIIDGGYEKPAKKISTLDSFNG 478
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ + +GK L I L K + +RMLDNVID+N+Y +K K
Sbjct: 479 NKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTTIRMLDNVIDLNFYPHRKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L +I + S E + D+ ME I Y A AS+ LA EKG
Sbjct: 539 DTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEKISYEAINASSNLAIEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y ++GS W +GI P D K + N SE +W KLR ++K+ GMRN +A
Sbjct: 599 YPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSEC-DWDKLREKVKEDGMRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + + NL
Sbjct: 658 IAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPNLS 699
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSGK 670
+ + Y A+E+ +++A +VR KWIDQ QSLNI++S SG
Sbjct: 700 L-------------ETWQYYTPAYELDQRILVKAAAVRGKWIDQGQSLNIFLSLDKASGG 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSISANYAK 699
L++ Y+LAW G+K+TYYLRS S + K
Sbjct: 747 YLNDIYQLAWELGVKSTYYLRSESPDSEK 775
>gi|19115403|ref|NP_594491.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
pombe 972h-]
gi|1350600|sp|P36602.2|RIR1_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase large chain;
AltName: Full=Ribonucleotide reductase
gi|1067207|emb|CAA91952.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
pombe]
Length = 811
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/747 (38%), Positives = 438/747 (58%), Gaps = 45/747 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNK--LLNPK 57
K P Y+ + AR+ + + K+ VF ++Q+ ++N D +++ K
Sbjct: 70 KHPDYAILAARIAVSNLHKQTEKVFSTVVQQL----------HDYVNPKTDKPAPMISDK 119
Query: 58 LAEFNL---SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ + + L +A++ +RD +N+ G K L Y L I+G E PQ MR+A+G+
Sbjct: 120 IYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIH 179
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
+ + AI+ YNL+S F ++PTLFN+GT R QLSSC+L T+ DD + GI++++K
Sbjct: 180 GEDI---EAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLK 236
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
A++SK AGG+G + +R+ GS I GTNG S G++P ++V N+ A V+QGG KR GA
Sbjct: 237 MCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGA 296
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
AYLE WH D+ +F+ELRK G++ R +M A+W+PDLFM+RV + WT F P +
Sbjct: 297 FAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEA 356
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G EF Y YE + + G+ + + A +W IL ETG+P++ +KD+C
Sbjct: 357 PGLADVWGDEFVALYEKYEKENR-GR----RSLPAQKVWYAILQSQVETGNPFMLYKDSC 411
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N +S Q++VG I SNLCTEI +S +E+ VCNL S+ L +K+GK + KL +++
Sbjct: 412 NRKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKV 471
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
R L+ +ID+NYY V +A+ SN+RHRPVGLG+ G D +++P+ S A K Q
Sbjct: 472 VTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIF 531
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I + A AS E+A+ +G Y SY+GS QGIL D VN ++ +
Sbjct: 532 ETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYD------------MWNVNPTDLWD 579
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W +L+ +I K G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N +
Sbjct: 580 WAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPW 639
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
L+K+L ++ LW+E M L DG++ I IP DL+ +Y T +EIS +I+ + R
Sbjct: 640 LLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGP 699
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVN 711
+IDQSQSLNI++ + S K+ + W +GLKT YYLR+++A+ A K +D V
Sbjct: 700 FIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIK----FTVDPVA 755
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSE 738
L + + +N + + N K I++E
Sbjct: 756 LRARNEESNEENKKPVIKNGKAEISAE 782
>gi|325286575|ref|YP_004262365.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga
lytica DSM 7489]
gi|324322029|gb|ADY29494.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
lytica DSM 7489]
Length = 825
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 273/647 (42%), Positives = 401/647 (61%), Gaps = 20/647 (3%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N L + ++ RD ++Y G K L Y L + G E PQ MR+++G+ LN
Sbjct: 121 KVIQDNSEKLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIHLN 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ + AI+ Y L+S F +TPTLFNSGT + Q+SSC+L + DD + GI++++K+
Sbjct: 181 DLD---AAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS I GTNG S GV+P L+V ND A V+QGG KRKG+
Sbjct: 238 AKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGVVPMLRVYNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI EF++L+KN G + R D+ A+W+PDLFM+RV + WTL P + PD
Sbjct: 298 VYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANADWTLMCPNECPD 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L+ K KEFEE+Y+ +E + K G+ K I A LW KIL ETG P++ +KDA N
Sbjct: 358 LYKKHDKEFEEAYLAFEAEGK-GR----KTIKARDLWEKILESQIETGTPYMLYKDAANR 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G I SSNLCTEI T+ +E+ VCNL SI L + +KNG+ D +L + +
Sbjct: 413 KSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKNGEFDHKELFRVTKRVT 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID NYY V +A+ SN+RHRP+GLG+ G D +M++P++S EA K + E
Sbjct: 473 RNLNTVIDRNYYPVVEAENSNMRHRPIGLGVQGLADAFIMMRMPFTSDEAKKLNQEIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ Y A AS E+A+E G YSSY+GS +G + + + E ++ +W+
Sbjct: 533 LYYAAVTASMEMAKEDGPYSSYEGSPISKGDFQHNLWGIKDDELSGRW---------DWE 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KLR + K G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N++L+
Sbjct: 584 KLRKSVLKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L + GLW+ES+ L +G++ I IP+D++++Y T +E+S II+ R +I
Sbjct: 644 EDLVQLGLWNESLKQELMRANGSIQHIDIIPEDIKELYKTVWELSMKDIIDMSRHRGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
DQSQSLN+++ N + KL + AW GLKT YYLR+ +A A K
Sbjct: 704 DQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAADAIK 750
>gi|415729821|ref|ZP_11472651.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|315928436|gb|EFV07748.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
jejuni subsp. jejuni DFVF1099]
Length = 698
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/715 (41%), Positives = 409/715 (57%), Gaps = 93/715 (13%)
Query: 39 EYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGI 97
EYF K +G ++L +++L L+ + PERD+QF YLG+K LYDRY + +G+
Sbjct: 9 EYFEKGEKEG---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGM 65
Query: 98 RIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCY 157
IE+PQ FM IAM L+ NE N ++ A KFY+L+S F M +TPTL N+ T R QLSSCY
Sbjct: 66 PIELPQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCY 125
Query: 158 LSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVN 217
+ + PD++ GIF+S +E ALLSK+ GG+G DW++VR++G I G + G+IPFLK+ N
Sbjct: 126 IGSTPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN 185
Query: 218 DVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKR 277
D+AVAV+Q G RKGAI Y+E WHMDI +FI+LRKN+G++RRR H++ A+W+ DLFMKR
Sbjct: 186 DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKR 245
Query: 278 VIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSM 337
V WTLF P D DL + +G+ FE+ Y YE + K + + A LW+KIL
Sbjct: 246 VRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITK----EIVEAKELWKKILLN 301
Query: 338 LFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKN--------EIG------ 383
FETG P++ FKD+ N +P HVGII SSNLCTEI NT N E G
Sbjct: 302 YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFD 361
Query: 384 -----------------VCNLGSIN------LTLHMKNGK-----LDPIKLKK------- 408
+ L SI+ + + +GK L I L K
Sbjct: 362 EEQKVVIDRGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDI 421
Query: 409 --TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
+ A+RMLDNVID+N+Y +K K +NL+ R +GLG+MG L KI + S E +
Sbjct: 422 ERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLN 481
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
D+ ME I + A AS+ LA EKG Y ++GS W +GI P D K + +
Sbjct: 482 KIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFD 541
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
SE +W KLR ++KK GMRN +AIAPT++IS ++G + +IEP Y+ + NLSG
Sbjct: 542 QSEC-DWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMI 600
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
+ + NL D + Y A+E+ +++A
Sbjct: 601 PVV------------------VPNLSL-------------DTWQYYTPAYELDQKILVKA 629
Query: 647 GSVRQKWIDQSQSLNIYIS--NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
+VR KWIDQ QSLNI++S SG L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 630 AAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEK 684
>gi|126662514|ref|ZP_01733513.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
bacterium BAL38]
gi|126625893|gb|EAZ96582.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
bacterium BAL38]
Length = 810
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 279/700 (39%), Positives = 423/700 (60%), Gaps = 34/700 (4%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+Q+ AR+ + + K F + + ++ Y + N+ + L++ ++ E
Sbjct: 71 PDYAQLAARIAISNLHKNTNKSFSETMNEM------YHYVNPRTNQ--EAPLISDEVYEV 122
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N L + ++ RD ++Y G K L Y L I G +E PQ MR+++G+ +N+
Sbjct: 123 IKANAEFLDSHIIYTRDFNYDYFGFKTLERSYLLRINGKIVERPQHMLMRVSVGIHMNDL 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ I+ Y+L+S F +TPTLFN+GT + Q+SSC+L T+ DD + GI++++K+ A
Sbjct: 183 ---EAVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 240 ISQSAGGIGLAIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIY 299
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LETWH DI EF++L+KNTG + R D+ A+W DLFMKRV + + WTL P + PDL
Sbjct: 300 LETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTLMCPNECPDLD 359
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
N +G EFE Y YE + K G+ K I A LW KIL ETG P++ +KDA N +S
Sbjct: 360 NVYGDEFEALYTSYEAKGK-GR----KTIRARELWEKILESQIETGTPYMLYKDAANRKS 414
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
Q+++G I SSNLCTEI TS +EI VCNL SI+L + ++NGK + L + R
Sbjct: 415 NQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASISLPMFVENGKFNHELLFTVTKRVTRN 474
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY VK+A+ SN+RHRPVGLG+ G D +M++P++S EA K + E +
Sbjct: 475 LNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMMRLPFTSDEAKKVNQEIFETLY 534
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS E+A+E+G YS+++GS +G + + ++E ++ +W L
Sbjct: 535 FAAVTASMEMAKEEGPYSTFEGSPISKGEFQHNLWNIKDEELSGRW---------DWASL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+ +
Sbjct: 586 RKEVMANGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHD 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L +GLW+E++ + +G++ I RIP DL+++Y T +E+S II+ R +IDQ
Sbjct: 646 LVDRGLWNETLKQEIMRHNGSVQHIDRIPADLKELYKTVWEMSMKDIIDMSRQRGYFIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLN+++ + + KL + AW GLKT YYLR+ +A
Sbjct: 706 SQSLNLFMQDANYAKLTSMHFYAWKSGLKTGMYYLRTKAA 745
>gi|386749767|ref|YP_006222974.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cetorum MIT 00-7128]
gi|384556010|gb|AFI04344.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
cetorum MIT 00-7128]
Length = 788
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 311/771 (40%), Positives = 427/771 (55%), Gaps = 120/771 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G YK F N N++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGF--------TGYKHLKEYFENAEEKNRMLKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L + IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDTDNNPIELPQHMFMSIAMFLAQNEEEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G+EF
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLAELYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD---ACN------- 353
E+ Y+ YE + K + I+A LW+K+L FE G P++ FKD CN
Sbjct: 364 EKRYLEYEKNPTIIK----EYINAKDLWKKVLMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 354 IRS------------PQQHV-------GII-----------------HSSNLCTEITLNT 377
IRS P + G I +++ L + TL
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQVEYTDGTIEFFEEKELVTTDSHITKYANKLTSTDTLKG 479
Query: 378 SK----------NEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYA 427
+ + VCNL SINL+ N + D +K+ + I +R+LDNVID+N+Y
Sbjct: 480 KQIYIATKVAKDGQTAVCNLASINLS--KINTEED---IKRVVPIMVRLLDNVIDLNFYP 534
Query: 428 VKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELA 487
+K K +NL++R +GLG+MG L KI + SKE ++ D ME I YYA S LA
Sbjct: 535 NRKVKATNLQNRAIGLGVMGEAQMLAENKIAWGSKEHLEKIDCLMEQISYYAIDTSANLA 594
Query: 488 EEKGRYSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542
+EKG Y ++GS W +GI P D +LKL ERG + +W+ L+ ++K
Sbjct: 595 KEKGVYKDFEGSEWSKGIFPIDKANKEALKL--TERGL------FDYTCDWQSLKEKVKA 646
Query: 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGL 602
GMRN +AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 647 NGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------- 693
Query: 603 WDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNI 662
+ NL N Y +A++I +I+ +VRQKWIDQ QS N+
Sbjct: 694 -----VPNLSLETWNF-------------YTSAYDIDAKDLIKVAAVRQKWIDQGQSTNV 735
Query: 663 Y--ISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
+ I + SGK L E Y LAW GLK+TYYLRS S +KS + I+ N
Sbjct: 736 FLRIESASGKTLHEIYTLAWRLGLKSTYYLRSESPTLDEKSVLDRSIECHN 786
>gi|390939239|ref|YP_006402976.1| ribonucleoside-diphosphate reductase subunit alpha
[Sulfurospirillum barnesii SES-3]
gi|390192346|gb|AFL67401.1| ribonucleoside-diphosphate reductase, alpha subunit
[Sulfurospirillum barnesii SES-3]
Length = 788
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 301/749 (40%), Positives = 413/749 (55%), Gaps = 109/749 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + +V G +++YF + +G L K +NL
Sbjct: 72 PNWTFVAARLFLYDLYHKVNG-----FTGYGSFQDYFERCEKEGRIALGLKEK---YNLK 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + PERDLQFNYLG+K L+DRY + + + IE+PQ FM IAM L+ NE N
Sbjct: 124 ELETYIKPERDLQFNYLGIKTLHDRYLIKDKHSQPIELPQHMFMAIAMFLAQNELNCGDW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE +LLSK+ G
Sbjct: 184 AKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYKEMSLLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW VRS+G I G + GVIPFLK+ ND+AVAV+Q G RKGAI YLE WHMD
Sbjct: 244 GIGWDWNLVRSMGGMIDGHKNAAGGVIPFLKITNDIAVAVDQLGTRKGAIAVYLEPWHMD 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++L+KN+G++RRR H++ A+W+ DLFMKRV + + WTLF P DL GKEF
Sbjct: 304 ISDFLDLKKNSGEERRRAHELFPALWINDLFMKRVEENAMWTLFDPAQTGDLCEVHGKEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y+ YE + K + + A LW+KIL+ FE+G P++ FKD+ N +P H GI
Sbjct: 364 ERRYLAYEQNETIAK----EHVLAKELWKKILTSYFESGSPFLCFKDSANKVNPNDHTGI 419
Query: 364 IHSSNLCTEITLNTSKNEI-------------------------------GVCNLGSIN- 391
I SSNLCTEI NT N V L SI+
Sbjct: 420 IRSSNLCTEIFQNTEPNHYKIKIVFNDQSFITYEESDLVKVDSGIIKEAKKVTALDSIDG 479
Query: 392 -----LTLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ M GK L + L K T+ +A+RMLDNVID+N+Y K K
Sbjct: 480 KDIFIVEKEMIEGKTAVCNLASVNLSKINTKEDIERTVPVAIRMLDNVIDLNFYPHAKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
++NL+ R +GLG+MG L I + S E D+ ME I Y A AS+ L+ EKG
Sbjct: 540 HTNLKSRAIGLGVMGEAQMLAEQGIEWGSNEHFSKIDEVMEAISYNAILASSNLSIEKGA 599
Query: 493 YSSYDGSLWDQGILPQDSL-----KLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y + GS W +GI P DS KL+++ YL +W+ LR ++K GMRN
Sbjct: 600 YPEFSGSKWSRGIFPIDSANEEAKKLVDRGGLFGYL-------YDWESLREKVKHNGMRN 652
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG + L W+
Sbjct: 653 GYLMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGMIPVVAPNL-----NPNTWN--- 704
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
Y A+E+ +++AG++RQKW+DQ QSLNI+I+
Sbjct: 705 -----------------------FYTPAYELDQRILVKAGAIRQKWVDQGQSLNIFITLD 741
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
SGK L++ Y LAW G+K+TYYLRS S
Sbjct: 742 KASGKYLNDIYMLAWKLGIKSTYYLRSQS 770
>gi|297447|emb|CAA46232.1| ribonucleotide reductase, large subunit [Schizosaccharomyces pombe]
Length = 811
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/747 (38%), Positives = 436/747 (58%), Gaps = 45/747 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNK--LLNPK 57
K P Y+ + AR+ + + K+ VF ++Q+ ++N D +++ K
Sbjct: 70 KHPDYAILAARIAVSNLHKQTEKVFSTVVQQL----------HDYVNPKTDKPAPMISDK 119
Query: 58 LAEFNL---SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ + + L +A++ +RD +N+ G K L Y L I+G E PQ MR+A+G+
Sbjct: 120 IYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIH 179
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
+ + AI+ YNL+S F ++PTLFN+GT R QLSSC+L T+ DD + GI++++K
Sbjct: 180 GEDI---EAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLK 236
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
A++SK AGG+G +R+ GS I GTNG S G++P ++V N+ A V+QGG KR GA
Sbjct: 237 MCAMISKTAGGIGIYIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGA 296
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
AYLE WH D+ +F+ELRK G++ R M A+W+PDLFM+RV + WT F P +
Sbjct: 297 FAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFCPNEA 356
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G EF Y YE + + G+ + + A +W IL ETG+P++ +KD+C
Sbjct: 357 PGLADVWGDEFVALYEKYEKENR-GR----RSLPAQKVWYAILQSQVETGNPFMLYKDSC 411
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N +S Q++VG I SSNLCTEI +S +E+ VCNL S+ L +K+GK + KL +++
Sbjct: 412 NRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKV 471
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
R L+ +ID+NYY V +A+ SN+RHRPVGLG+ G D +++P+ S A K Q
Sbjct: 472 VTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIF 531
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I + A AS E+A+ +G Y SY+GS QGIL D VN ++ +
Sbjct: 532 ETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYD------------MWNVNPTDLWD 579
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W + + +I K G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N +
Sbjct: 580 WAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPW 639
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
L+K+L ++ LW+E M L DG++ I IP DL+ +Y T +EIS +I+ + R
Sbjct: 640 LLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGP 699
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVN 711
+IDQSQSLNI++ + S K+ + W +GLKT YYLR+++A+ A K +D V
Sbjct: 700 FIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIK----FTVDPVA 755
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSE 738
L + + +N + + N K I++E
Sbjct: 756 LRARNEESNEENKKPVIKNGKAEISAE 782
>gi|222823071|ref|YP_002574644.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
lari RM2100]
gi|222538292|gb|ACM63393.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
lari RM2100]
Length = 791
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 297/750 (39%), Positives = 425/750 (56%), Gaps = 100/750 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P ++ V ARL +Y + K+V G YK + +++ KG + ++L +++L
Sbjct: 71 PNWTFVAARLFLYDLYKKVSGF--------TGYK-HLREYLEKGEKEGRILIGLKEKYDL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
L+ + PERDLQF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE + +
Sbjct: 122 DDLNAYIKPERDLQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNELDSQT 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S+F M +TPTL N+ T R QLSSCY+ + D++ GIF+S +E ALLSK+
Sbjct: 182 WAKKFYDLISTFEVMLATPTLSNARTTRHQLSSCYIGSTSDNIEGIFDSYQEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +F++LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D L + +G+E
Sbjct: 302 DINDFLDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTASLCDLYGQE 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE+ Y +E + K + + A LW+KIL FE+G P++ FKD+ N +P H G
Sbjct: 362 FEKRYEEFEKDESIVK----EIVDAKELWKKILLSYFESGLPFLCFKDSANKTNPNSHAG 417
Query: 363 IIHSSNLCTEITLNTSKN------------------------EIGVCNLGSINLTLHMKN 398
II SSNLCTEI NT N + G L TL N
Sbjct: 418 IIRSSNLCTEIFQNTEPNYYQIKITFDDKTELHLDEDEELTIDGGYKKLAKKVSTLDSIN 477
Query: 399 GK-----------------------LDPIKLKKTIR----IAMRMLDNVIDINYYAVKKA 431
GK L I K+ I+ A+RMLDNVID+N+Y K
Sbjct: 478 GKKVYIVEKYKNEGKTAVCNLASINLSKINTKEDIQRVVPTAIRMLDNVIDLNFYPHVKV 537
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K +NL+ R +GLG+MG L +I + S E + D+ MEMI Y A AS+ LA EKG
Sbjct: 538 KNTNLKSRAIGLGVMGEAQMLAEAQIYWGSNEHFEKIDRIMEMISYEAILASSNLALEKG 597
Query: 492 RYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCV 551
Y ++GS W +GI+P D K+ + + SE +W+KLR ++K+ G+RN +
Sbjct: 598 SYPDFEGSNWSKGIVPIDVANENAKKLTASEGLFDQSEC-DWEKLREKLKRDGIRNGYLM 656
Query: 552 AIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANL 611
AIAPT++IS ++G + +IEP Y+ + NLSG MI +
Sbjct: 657 AIAPTSSISILVGTTQTIEPVYKRKWFEQNLSG----------------------MIPTV 694
Query: 612 KYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKSG 669
+ + + + Y A+E+ +++A ++R KWIDQ QSLNI++S SG
Sbjct: 695 ---------VPNLSANTWQYYTPAYELDQKILVKAAAIRGKWIDQGQSLNIFVSLDKASG 745
Query: 670 KKLDETYKLAWLRGLKTTYYLRSISANYAK 699
L+E Y+LAW G+K+TYYLRS S + K
Sbjct: 746 GYLNEIYQLAWELGVKSTYYLRSESPDSQK 775
>gi|237752016|ref|ZP_04582496.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
winghamensis ATCC BAA-430]
gi|229376583|gb|EEO26674.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
winghamensis ATCC BAA-430]
Length = 790
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 304/747 (40%), Positives = 413/747 (55%), Gaps = 105/747 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + V G YK F +N+++ +FNL
Sbjct: 72 PNWTYVAARLFLYDLYHRVNGFN--------GYKSLAEYFEKGERENRIIGGLKEKFNLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ ++PERDLQFNYLG+K LYDRY L +G IE+PQ FM IAM L+ NE +
Sbjct: 124 RLNKKIVPERDLQFNYLGVKTLYDRYLLKDKQGNPIELPQHMFMGIAMFLAQNEKDPNYW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A +FY+LLS F M +TPTL N+ T R QLSSCY+ + PD + GIF+S KE ALLSKY G
Sbjct: 184 AEQFYDLLSKFEVMVATPTLSNARTPRHQLSSCYVGSTPDSIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++++R LGS I G + GVIPFLK+ ND+A+AV+Q G RKGAI YLE WH D
Sbjct: 244 GIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQLGTRKGAISVYLEPWHSD 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++++KN+G++RRRTHD+ A+W+PDLFMKRV + W+LF DL N +G+ F
Sbjct: 304 IFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVGEDGLWSLFDSLACADLTNLYGEAF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E YI YE + + + + A LW+KIL+ FE G P++ FKD N +P H GI
Sbjct: 364 EARYIQYEQDESIVR----ETVKAKDLWKKILTSYFEIGSPFLCFKDNANRANPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------VCNLGSINLTLHM-------- 396
I SSNLCTEI NT N E G + + G L+ +
Sbjct: 420 IRSSNLCTEIFQNTEPNTTFIRVEFEDGTIEDYPEYQPIITDYGIEKLSNKITSTDSIGG 479
Query: 397 ----------KNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
K+GK L I L K + IA+RMLDNVID+N+Y +K K
Sbjct: 480 KKVFIAQRESKDGKTAVCNLASINLSKIHTKEDIERVVPIAIRMLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL +R +GLG+MG L +I + S ++ D ME + Y A +S ELA+EKG
Sbjct: 540 VTNLDNRAIGLGVMGEAQMLAESRIEWGSDAHLQKIDAIMESVSYNAIKSSCELAQEKGV 599
Query: 493 YSSYDGSLWDQGILPQDSLKLLEK---ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
YS + GS W +GI P D K +RG + + +W LR +K GMRN
Sbjct: 600 YSDFVGSEWSKGIFPIDKANNEAKALVDRGGLF-----AYDYDWNALREEVKTKGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + L +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL-------------SLD 701
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
N Y Y +A+EI +++A +VRQKWIDQ QS NI+++
Sbjct: 702 NWNY------------------YTSAYEIDQRLLVKAAAVRQKWIDQGQSTNIFMALNLA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSIS 694
SGK L+E Y LAW GLK+TYYLRS S
Sbjct: 744 SGKYLNEIYTLAWKLGLKSTYYLRSQS 770
>gi|344296860|ref|XP_003420120.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Loxodonta africana]
Length = 792
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 287/700 (41%), Positives = 424/700 (60%), Gaps = 32/700 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF ++ + Y + + + N L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVMEDL---YNYINPHNGKHSPMVANSTLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ LYE+ K G+I+ K + A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEK---LYESYEKRGRIR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A SN RHRPVG+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEAFLSNKRHRPVGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA+E G Y +Y+GS +GIL D V ++ +WK L
Sbjct: 537 YGALEASCELAKEHGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWKLL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+
Sbjct: 585 KEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQ
Sbjct: 645 LTERGLWNEEMKNQIIACNGSIQSIHEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 705 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|397531935|gb|AFO54477.1| ribonucleotide reductase large subunit R1ii [Carassius carassius]
Length = 793
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 293/753 (38%), Positives = 439/753 (58%), Gaps = 38/753 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + ++ + Y + + I + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSEVMEDL---YNYVNPLNGHHSPMISKETLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L I G E PQ MR+++G+ +
Sbjct: 127 --NKDRLNSAIIFDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDI- 183
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+
Sbjct: 184 --AAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DI +F+EL+KNTG + +R D+ A+W+PDLFMKRV + W+L P D P L
Sbjct: 302 EPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNADWSLMCPSDCPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y+ YE + + ++ + A LW I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFEKLYMKYEQEGRAKRV-----VKAQQLWYAIIESQTETGTPYMLYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL SI L +++ + D KL ++ ++
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPERTFDFQKLASVTKVIVKN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +ID+NYY V++A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDVNYYPVREAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQLLNTQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A +S ELA E G Y +Y GS +GIL D + EK ++ +W L
Sbjct: 537 YAALESSCELAAECGPYETYAGSPVSKGILQYD---MWEK---------TPTDLWDWAAL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+
Sbjct: 585 KEKITKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M L +G++ I IPDDL+++Y T +EIS I++ + R +IDQ
Sbjct: 645 LTERGLWNEEMKNQLIAQNGSIQAIPTIPDDLKELYKTVWEISQKTILKMAADRGAFIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLNI+I+ + KL + W +GLKT YYLR+ A + + +D L E
Sbjct: 705 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA----ANPIQFTLDKEKLKE- 759
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ N +E K K + + + +EC C
Sbjct: 760 -TQESTSNEEETKERNKAAMVCSLENRDECLMC 791
>gi|5006420|gb|AAD37491.1| ribonucleotide reductase M1 subunit [Homo sapiens]
Length = 792
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|4506749|ref|NP_001024.1| ribonucleoside-diphosphate reductase large subunit [Homo sapiens]
gi|132608|sp|P23921.1|RIR1_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleoside-diphosphate reductase
subunit M1; AltName: Full=Ribonucleotide reductase large
subunit
gi|323714413|pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
gi|323714414|pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
gi|323714415|pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
gi|323714416|pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
gi|323714417|pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
gi|323714418|pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
gi|323714419|pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
gi|323714420|pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
gi|36065|emb|CAA42118.1| M1 subunit of ribonucleotide reductase [Homo sapiens]
gi|36153|emb|CAA42180.1| large subunit ribonucleotide reductase [Homo sapiens]
gi|13676332|gb|AAH06498.1| Ribonucleotide reductase M1 [Homo sapiens]
gi|119622988|gb|EAX02583.1| ribonucleotide reductase M1 polypeptide [Homo sapiens]
gi|123991808|gb|ABM83954.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
gi|123999422|gb|ABM87271.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
Length = 792
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|114635715|ref|XP_001160029.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 4 [Pan troglodytes]
gi|397465790|ref|XP_003804664.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 1 [Pan paniscus]
gi|410214658|gb|JAA04548.1| ribonucleotide reductase M1 [Pan troglodytes]
gi|410262940|gb|JAA19436.1| ribonucleotide reductase M1 [Pan troglodytes]
gi|410303308|gb|JAA30254.1| ribonucleotide reductase M1 [Pan troglodytes]
gi|410337287|gb|JAA37590.1| ribonucleotide reductase M1 [Pan troglodytes]
Length = 792
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|332211477|ref|XP_003254845.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 1 [Nomascus leucogenys]
Length = 792
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 421/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS ++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|194388656|dbj|BAG60296.1| unnamed protein product [Homo sapiens]
Length = 762
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 40 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 87
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 88 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 147
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 148 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 204
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 205 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 264
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 265 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 324
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 325 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 379
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 380 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 439
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 440 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 499
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 500 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 547
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 548 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 607
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 608 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 667
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 668 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 714
>gi|372209391|ref|ZP_09497193.1| ribonucleoside-diphosphate reductase subunit alpha
[Flavobacteriaceae bacterium S85]
Length = 793
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/707 (39%), Positives = 429/707 (60%), Gaps = 43/707 (6%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFIN--KGIDNKLLNP--- 56
P Y+++ AR+ + + K F K + ++ ++N G+++ LL+
Sbjct: 71 PDYAKLAARISVSNLHKNTKKSFSKTMSEL----------YGYVNPRTGLESPLLSDEVY 120
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N +LL +A++ +RD +++ G K L Y L I G E PQ MR+A+G+ LN
Sbjct: 121 KVIQDNAALLDSAIVYDRDFNYDFFGFKTLERSYLLKINGKIAERPQHMLMRVAVGIHLN 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ AI+ YNL+S F +TPTLFNSGT + Q+SSC+L + DD + GI++++K+
Sbjct: 181 DIEE---AIETYNLMSKKFFTHATPTLFNSGTPKPQMSSCFLLQMQDDSIDGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G +R+ GS I+GTNG S G+IP LKV ND A V+QGG KRKG+
Sbjct: 238 AKISQSAGGIGLSIHNIRATGSYIRGTNGTSNGIIPMLKVYNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI +F++LRKNTG + +R D+ +A+W+ DLFMKRV + WTL P + P
Sbjct: 298 IYIEPWHADIFDFLDLRKNTGAEEKRARDLFLALWISDLFMKRVEENGDWTLMCPNECPG 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L++ +G+EFE Y YE Q K G+ K I A LW K+L ETG+P++ +KDA N
Sbjct: 358 LYDTYGEEFEALYTQYEAQGK-GR----KTIKARELWEKVLEAQIETGNPYMLYKDAANR 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKT 409
+S Q+++G+I SSNLCTEI T+K+E+ VCNL SI + + ++ + KL K
Sbjct: 413 KSNQKNLGVIRSSNLCTEIMEYTAKDEVAVCNLASIAIPMFVETNNKGEKYFNHDKLYKV 472
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ R LD VID NYY VK+A+ SN+RHRPVGLGI G D ++++P++S EA
Sbjct: 473 VKKVTRNLDTVIDRNYYPVKEAENSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKALNK 532
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
E + + A +S E+A +KG YS+++GS QG + + ++E ++
Sbjct: 533 DIFETLYFAAVESSMEIASKKGAYSTFEGSPMSQGEFQFNLWGVKDEELSGRW------- 585
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W LR ++KK G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +
Sbjct: 586 --DWATLREQVKKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVV 643
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N++L+++L + GLW+ + L +G++ I IP DL+++Y T +E+S II+
Sbjct: 644 NKHLLEDLVELGLWNNDLKEELMRANGSIQHIEGIPADLKELYKTVWELSMKDIIDMSRQ 703
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLN+++ + + KL + AW GLKT YYLR+ SA
Sbjct: 704 RGYFIDQSQSLNLFMESPNYSKLTSMHFYAWKSGLKTGMYYLRTKSA 750
>gi|242310744|ref|ZP_04809899.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pullorum MIT 98-5489]
gi|239523142|gb|EEQ63008.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
pullorum MIT 98-5489]
Length = 788
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 309/765 (40%), Positives = 422/765 (55%), Gaps = 114/765 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFG----KEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
P ++ V ARL +Y + +V G K +K+ Y E K +N+++ +
Sbjct: 72 PNWTFVAARLFLYDLYHKVNGFNGYKTLKE------YLEIGEK------ENRIIKGMKEK 119
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESN 119
FNL L+ + P+RDLQF YLG+K LYDRY L +G IE+PQ FM IAM L+ NE +
Sbjct: 120 FNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGNPIELPQHMFMGIAMFLAQNEDD 179
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
A +FY+LLS F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLS
Sbjct: 180 PTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDSYKEMALLS 239
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
KY GG+G D++++R LGS I G + GV+PFLK+ ND+A+AV+Q G RKGAI YLE
Sbjct: 240 KYGGGIGWDFSKIRGLGSFIDGHKNAAGGVVPFLKITNDIAIAVDQLGTRKGAIAVYLEP 299
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +F++++KN+G++RRRTHD+ A+W+PDLFMKRV + W LF DL N +
Sbjct: 300 WHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVAEDGLWNLFDALTCADLTNLY 359
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+ FE+ Y YE + K + I A LW++IL+ FE G P++ FKD N +P
Sbjct: 360 GEAFEKRYKEYEADESIPK----ETIKAKDLWKRILTNYFEVGSPFLCFKDNANRANPNY 415
Query: 360 HVGIIHSSNLCTEITLNTSKN------------------------EIGVCNLGSINLTLH 395
H GII SSNLCTEI NT N + G+ + +
Sbjct: 416 HSGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIQDYEEYQEVLTDCGILKSSNKITSTD 475
Query: 396 MKNGK------------------LDPIKLKK---------TIRIAMRMLDNVIDINYYAV 428
NGK L I L K + IA+RMLDNVID+N+Y
Sbjct: 476 SINGKKVFISQRESVDGKTAVCNLASINLSKINTKEDIERVVPIAIRMLDNVIDLNFYPN 535
Query: 429 KKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAE 488
+K K +NL R +GLG+MG L KI + S++ ++ D+ MEMI Y A AS +LA+
Sbjct: 536 RKVKVTNLDTRAIGLGVMGEAQMLAENKIEWGSQKHLEKIDEIMEMISYNAINASCKLAQ 595
Query: 489 EKGRYSSYDGSLWDQGILPQDSLKLLEK---ERGSKYLKVNMSESLNWKKLRNRIKKFGM 545
EKG Y+ + GSLW QGI P D K +RG + + +W LR +K G+
Sbjct: 596 EKGVYNDFAGSLWSQGIFPIDKANNEAKALVDRGGLFGFI-----YDWDSLREEVKTKGI 650
Query: 546 RNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDE 605
RN +AIAPT++IS ++G + +IEP Y+ + NLSG + L E
Sbjct: 651 RNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE--------- 701
Query: 606 SMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS 665
N Y Y +A+EI II+A ++RQKWIDQ QS NI+IS
Sbjct: 702 ----NWNY------------------YTSAYEIDQTLIIKAAAIRQKWIDQGQSTNIFIS 739
Query: 666 --NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
SGK L++ Y LAW GLK+TYYLRS S A+ S + I+
Sbjct: 740 LDKASGKYLNDIYSLAWRLGLKSTYYLRSQSVE-AENSTMDRSIE 783
>gi|73988079|ref|XP_534027.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 1 [Canis lupus familiaris]
Length = 792
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 285/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHEEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V +E
Sbjct: 530 QIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYD------------MWNVTPTE 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|354495277|ref|XP_003509757.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
[Cricetulus griseus]
gi|344240187|gb|EGV96290.1| Ribonucleoside-diphosphate reductase large subunit [Cricetulus
griseus]
Length = 792
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLHNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 SSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFQKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D ++ ++
Sbjct: 530 QIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVVP------------TD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ IS IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSISEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|31982026|ref|NP_033129.2| ribonucleoside-diphosphate reductase large subunit [Mus musculus]
gi|341941976|sp|P07742.2|RIR1_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleoside-diphosphate reductase
subunit M1; AltName: Full=Ribonucleotide reductase large
subunit
gi|16741219|gb|AAH16450.1| Ribonucleotide reductase M1 [Mus musculus]
gi|26352964|dbj|BAC40112.1| unnamed protein product [Mus musculus]
gi|74205882|dbj|BAE23230.1| unnamed protein product [Mus musculus]
gi|74214440|dbj|BAE40455.1| unnamed protein product [Mus musculus]
gi|148684655|gb|EDL16602.1| ribonucleotide reductase M1, isoform CRA_b [Mus musculus]
Length = 792
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 SSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS ELA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYD------------MWNVAPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|384500853|gb|EIE91344.1| hypothetical protein RO3G_16055 [Rhizopus delemar RA 99-880]
Length = 803
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 293/752 (38%), Positives = 432/752 (57%), Gaps = 30/752 (3%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ + AR+++ +QKE K + ++ K + + +L + +A N S
Sbjct: 72 PDFATLAARIVISNLQKETDDKFSAVVQKLYHHEHPKLKQASPLVSKELYDVVMA--NAS 129
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCA 124
+ A+ ERD FN+ G K L Y L I G +E PQ+ MR+A+G+ + A
Sbjct: 130 KIDAAIKHERDYDFNFFGFKTLERSYLLKINGRIVERPQYMIMRVAIGI---HGGDLEGA 186
Query: 125 IKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAG 183
K Y+L+SS F +TPTLFN+GT R QLSSC+L + +D + GI++++ A +SK AG
Sbjct: 187 FKTYDLMSSKYFTHATPTLFNAGTPRPQLSSCFLVQMREDSIEGIYDTLTTCARISKAAG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHM 242
G+G ++R GS I GTNG S GVIP L+V ND A V QGG KR G YLE WH+
Sbjct: 247 GVGVAAQKIRGSGSYIAGTNGTSNGVIPMLRVFNDTARFVTQGGGKRNGNFAMYLEPWHV 306
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN G + R D+ + +WVPDLFMKRV + W+LF P + P L + +G++
Sbjct: 307 DVFDFLDLRKNNGAEEMRARDLFLGLWVPDLFMKRVEQNGKWSLFCPDEAPGLWDSYGEK 366
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
F+ YI YEN+ GK + K I A LW IL ETG P++ +KDACN +S Q+++G
Sbjct: 367 FDALYIKYENE---GKAR--KTIEAQKLWFAILEAQTETGMPYMLYKDACNEKSNQKNLG 421
Query: 363 IIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNV 420
I SSNLCTEI TS +E+ VCNL S+ L ++ D KL + ++ R L+ V
Sbjct: 422 TITSSNLCTEIIEYTSPDEVAVCNLASLALPKFVNKDTKTFDFAKLHEVTKVVTRNLNKV 481
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
ID+NYY V++A+ SN+RHRP+GLG+ G D +M P+ S EA + E I + A
Sbjct: 482 IDVNYYPVEEARNSNMRHRPIGLGVQGLADAFILMGFPFDSPEAAQLNRDIFERIYFAAL 541
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS ELA+E G Y +Y GS QGIL D V S+ L+W LR+ I
Sbjct: 542 EASCELAKEHGPYETYLGSPISQGILQHD------------MWNVKDSDILDWDTLRSNI 589
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
KK+G+RNS +A PTA+ S I+G + EP N++ + SGEF +N+YL+ EL
Sbjct: 590 KKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVQSGEFQVVNQYLLNELVDL 649
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW++++ + G++ +I IPD L+++Y T +EIS II+ + R +IDQSQS+
Sbjct: 650 GLWNDNIKNMMIAHGGSIQRIPGIPDRLKELYKTVWEISQRTIIDMAADRGAYIDQSQSM 709
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNF-EMGIDSVNLDEISIK 718
N++ + S KL + AW +GLKT YYLRS A A K ++ + ++L E
Sbjct: 710 NLFTAEPSFGKLTSMHFYAWKKGLKTGMYYLRSRPAVDAIKFTVDQLALKQMSLSESKDD 769
Query: 719 GYN--KNLQEIKNNKKCLINSEINDVNECESC 748
++ K +E + + + I++ + C C
Sbjct: 770 KFDSAKEAEEAEQRRLAQLQCSIDNRDACLMC 801
>gi|229597646|pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
gi|229597647|pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/635 (42%), Positives = 395/635 (62%), Gaps = 24/635 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 54 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID-- 111
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 112 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 170
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 171 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 230
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 231 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 290
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD+CN +S QQ
Sbjct: 291 GEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 345
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+
Sbjct: 346 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 405
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 406 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 465
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+
Sbjct: 466 ALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWKVLKE 513
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L
Sbjct: 514 KIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLT 573
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQ
Sbjct: 574 ERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQ 633
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRS 692
SLNI+I+ + KL + W +GLKT YYLR+
Sbjct: 634 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRT 668
>gi|114635721|ref|XP_001159888.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 2 [Pan troglodytes]
gi|397465792|ref|XP_003804665.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 2 [Pan paniscus]
Length = 695
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 269/638 (42%), Positives = 396/638 (62%), Gaps = 24/638 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 30 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID-- 87
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 88 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 146
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 147 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 206
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 207 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 266
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD+CN +S QQ
Sbjct: 267 GEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 321
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+
Sbjct: 322 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 381
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 382 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 441
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+
Sbjct: 442 ALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWKLLKE 489
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L
Sbjct: 490 KIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLT 549
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQ
Sbjct: 550 ERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQ 609
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 610 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 647
>gi|268573646|ref|XP_002641800.1| C. briggsae CBR-RNR-1 protein [Caenorhabditis briggsae]
Length = 790
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 270/638 (42%), Positives = 394/638 (61%), Gaps = 24/638 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD + Y G K L Y L I +E PQ MR+A+G+ + +
Sbjct: 133 NADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEVVERPQQMLMRVAIGIHGKDIS-- 190
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ AL+SK
Sbjct: 191 -AAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALISK 249
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA YLE
Sbjct: 250 SAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 309
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EF+ LRKNTG + R D+ +A+WVPDLFMKRV K W+L P + P L + +
Sbjct: 310 WHADIFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQDWSLMCPCECPGLDDCW 369
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +S QQ
Sbjct: 370 GEEFETLYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQ 424
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI ++ +E+ VCNL SI L + N K D +KL + ++ + L+
Sbjct: 425 NLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALNRFVTNDKKFDFVKLAEVTKVITKNLN 484
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+ID+NYY +++A+ SN+RHRP+GLG+ G DC +M+ P++S +A + E I Y
Sbjct: 485 KIIDVNYYPIEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSPQARDLNKRIFETIYYA 544
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS ELAE G YS+Y+GS +G L D V + NW +LR
Sbjct: 545 ALEASCELAERDGPYSTYEGSPVSKGQLQFD------------MWGVTPTNQCNWDELRK 592
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K G+RNS +A PTA+ + I+G + SIEP N++ + LSG+F +N +++K+L
Sbjct: 593 KIAKHGVRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLV 652
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW + M L +G++ I IPDD++++Y T +EIS IIE + R +IDQSQ
Sbjct: 653 ERGLWTDEMKNRLIANNGSIQNIPGIPDDIKELYLTVWEISQKEIIEMAADRGAFIDQSQ 712
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SLNI+++ S + + W +GLKT YYLR+ A
Sbjct: 713 SLNIHMAKPSYAAITSMHFYGWKKGLKTGMYYLRTKPA 750
>gi|315452682|ref|YP_004072952.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
felis ATCC 49179]
gi|315131734|emb|CBY82362.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
felis ATCC 49179]
Length = 788
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 294/744 (39%), Positives = 410/744 (55%), Gaps = 103/744 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V ARL ++ + +V G + YK F + +++ +F+L
Sbjct: 76 PNWSFVAARLFLFDLYHKVSGF--------MGYKHLAEYFEVGEREGRIVRGFKEKFDLD 127
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L++AL P+RDLQFNYLG+K L+DRY L + R IE+PQ FM IAM L+ NES+ +
Sbjct: 128 RLNSALEPKRDLQFNYLGIKTLHDRYLLKDKQDRPIELPQHMFMAIAMFLAQNESDPNEK 187
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A+ FY +LS F MC+TPTL N+ T QLSSCY+ + PD++ GIF+S K+ ALLSKY G
Sbjct: 188 ALAFYEVLSRFEVMCATPTLANARTPNHQLSSCYVGSTPDNIEGIFDSYKDMALLSKYGG 247
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++QVR LGS I G S G IPFLK+VNDVA+AV+Q G RKGAI YLE WH D
Sbjct: 248 GIGWDFSQVRCLGSYIDGHKEASAGAIPFLKIVNDVAIAVDQLGTRKGAIAVYLEIWHKD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+W+ DLFM+RV + WTLF PY DL +G F
Sbjct: 308 VLEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEEDGMWTLFDPYVCSDLTECYGDVF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
+ Y+ YEN + K ++I A LW+KIL+ FE+G P++ FKD N H G+
Sbjct: 368 TQKYLAYENNENIIK----QRIEARTLWKKILTNYFESGLPFLGFKDNANNAHLNGHTGL 423
Query: 364 IHSSNLCTEITLNTSKNEIGVC--------------NLGSINLTLHMKNGKL---DPIK- 405
I SSNLCTEI T + V +L + + + K KL D +K
Sbjct: 424 IRSSNLCTEIYQMTGSSHYKVAVEFVDGSLEYYEEKDLITTDAHITKKANKLTSNDSLKG 483
Query: 406 ---------------------------------LKKTIRIAMRMLDNVIDINYYAVKKAK 432
+ + + IA+RMLDN+ID+N+Y + KAK
Sbjct: 484 KRIFMTTKIAQGGQVAVCNLASLNLSKVQSEADIARVVPIAVRMLDNIIDLNFYPIDKAK 543
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +G G+MG L +I + S E + D ME I Y S +LA+E+G
Sbjct: 544 RTNLQSRAIGFGVMGEAQALAQARIEWGSVEHAHYIDALMEKISYTTILESCKLAQERGS 603
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA 552
Y+ ++ S W +GI P D K + + + +W L+ ++K+ G+RN +A
Sbjct: 604 YAHFENSEWSRGIFPMD------KAKSQAWEISPHKPTCDWGGLKAQVKQHGLRNGYLMA 657
Query: 553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLK 612
IAPT++IS ++G + +IEP Y+ + NLSG + V EL + W
Sbjct: 658 IAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVV----VPELSLE-TW--------- 703
Query: 613 YFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI--SNKSGK 670
Y +A++I P II +VRQKWIDQ QSLN+++ SGK
Sbjct: 704 -----------------HYYTSAYDIDPKAIIRLAAVRQKWIDQGQSLNLFLRPDQASGK 746
Query: 671 KLDETYKLAWLRGLKTTYYLRSIS 694
L E Y LAW GLK+TYYLR+ S
Sbjct: 747 LLHEIYHLAWKLGLKSTYYLRTAS 770
>gi|116283230|gb|AAH03299.1| Rrm1 protein [Mus musculus]
Length = 762
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 SSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS ELA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYD------------MWNVAPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|78778290|ref|YP_394605.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurimonas
denitrificans DSM 1251]
gi|78498830|gb|ABB45370.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
[Sulfurimonas denitrificans DSM 1251]
Length = 788
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 293/754 (38%), Positives = 420/754 (55%), Gaps = 111/754 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V +RL ++ + EV G + YF + +G +LL +NL
Sbjct: 72 PNWTFVASRLFLFNLYHEVNG-----FTGYCSLENYFERGEKEG---RLLYGLKGMYNLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + PERD+ FNYLG+K LYDRY + + IE+PQ FM IAM L+ E +E+
Sbjct: 124 ELEKHIKPERDMLFNYLGVKTLYDRYLIKDKNSNPIELPQHMFMAIAMFLAQREEKKEEW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
AIKFYN++S+F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S E A+LSK+ G
Sbjct: 184 AIKFYNMISTFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYAEMAMLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DWT VRS+GS I G + G +PFLK+ ND+AVAV+Q G RKGAI Y+E WH+D
Sbjct: 244 GIGWDWTNVRSMGSYIDGHKNAAGGTVPFLKITNDIAVAVDQLGTRKGAIAVYMEPWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++L+KN+G++RRR HD+ A+W+ DLFM+RV + + WTLF PYD +L G+EF
Sbjct: 304 INDFLDLKKNSGEERRRAHDLFPALWLNDLFMQRVEEDAIWTLFDPYDCRELTTLHGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
+ Y+ E + K +K+ A LW+KIL+ FETG P++ FKD N +P H GI
Sbjct: 364 NKKYVELEKNEAIIK----EKLKAKNLWKKILTSYFETGSPFLCFKDNANRANPNSHSGI 419
Query: 364 IHSSNLCTEITLNTSKN------------------------------------------- 380
I SSNLCTEI NT+ N
Sbjct: 420 IRSSNLCTEIFQNTNPNHYKIKFIFQNGDSVSYEEEEIIEVDSGLKKPAKKVTALDSIGG 479
Query: 381 -EIGVCNLGSIN----------LTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVK 429
EI V IN + L N K D + + + IA+R LDNVID+N+Y ++
Sbjct: 480 REIYVVEKEKINGDTAVCNLASVNLSRINTKED---IDRVVPIAIRALDNVIDLNFYPIE 536
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
K K +N++ R +GLG+MG L I + ++E D+ ME + + A AS+++A E
Sbjct: 537 KVKRTNMKTRAIGLGVMGEAQMLAQEGISWGTQEHFDKIDEIMESVSFNAISASSDIALE 596
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEK---ERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546
KG YS Y+GS W +GI+P D K +RG + + + W++LR ++K G+R
Sbjct: 597 KGSYSEYEGSKWSRGIMPMDHATAEVKNLVDRGGLF-----ASAYEWEELRTKVKNQGIR 651
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N +AIAPT++IS + G + +IEP ++ + NLSG + +V EL + W
Sbjct: 652 NGYLMAIAPTSSISILTGTTQAIEPVFKRKWYEENLSG----LIPVVVPELSPE-TW--- 703
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS- 665
Y A++++ +I+A ++RQKW+DQ QSLNI+I+
Sbjct: 704 -----------------------AYYTPAYDLNQTLLIKAAAIRQKWLDQGQSLNIFITL 740
Query: 666 -NKSGKKLDETYKLAWLRGLKTTYYLRSISANYA 698
SGK L+E Y LAW GLK+TYYLRS S A
Sbjct: 741 DKASGKYLNEIYMLAWKLGLKSTYYLRSQSPEMA 774
>gi|332211481|ref|XP_003254847.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 3 [Nomascus leucogenys]
Length = 695
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 269/638 (42%), Positives = 395/638 (61%), Gaps = 24/638 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 30 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID-- 87
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 88 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 146
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 147 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 206
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 207 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 266
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD+CN +S QQ
Sbjct: 267 GEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 321
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+
Sbjct: 322 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 381
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 382 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 441
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+
Sbjct: 442 ALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWKLLKE 489
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L
Sbjct: 490 KIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLT 549
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW E M + +G++ I IPDDL+++Y T +EIS ++ + R +IDQSQ
Sbjct: 550 ERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQ 609
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 610 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 647
>gi|197100140|ref|NP_001126012.1| ribonucleoside-diphosphate reductase large subunit [Pongo abelii]
gi|75041664|sp|Q5R919.1|RIR1_PONAB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleoside-diphosphate reductase
subunit M1; AltName: Full=Ribonucleotide reductase large
subunit
gi|55730032|emb|CAH91741.1| hypothetical protein [Pongo abelii]
Length = 792
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKEAKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I S+LCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|200765|gb|AAA40061.1| ribonucleotide reductase subunit M1 [Mus musculus]
Length = 792
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 419/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 SSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F + PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS ELA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYD------------MWNVAPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|403262126|ref|XP_003923446.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 1 [Saimiri boliviensis boliviensis]
Length = 792
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 421/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQRRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|296217186|ref|XP_002754895.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 1 [Callithrix jacchus]
Length = 792
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQRRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS ++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|194382560|dbj|BAG64450.1| unnamed protein product [Homo sapiens]
Length = 695
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 268/638 (42%), Positives = 395/638 (61%), Gaps = 24/638 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 30 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID-- 87
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 88 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 146
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 147 SAGGIGVAVSCIRATGSYIAGTNGNPNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 206
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 207 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 266
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD+CN +S QQ
Sbjct: 267 GEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 321
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+
Sbjct: 322 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 381
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 382 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 441
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+
Sbjct: 442 ALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWKVLKE 489
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L
Sbjct: 490 KIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLT 549
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQ
Sbjct: 550 ERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQ 609
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 610 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 647
>gi|447146|prf||1913428A ribonucleotide reductase:SUBUNIT=large
Length = 811
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/747 (38%), Positives = 435/747 (58%), Gaps = 45/747 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNK--LLNPK 57
K P Y+ + AR+ + + K+ VF ++Q+ ++N D +++ K
Sbjct: 70 KHPDYAILAARIAVSNLHKQTEKVFSTVVQQL----------HDYVNPKTDKPAPMISDK 119
Query: 58 LAEFNL---SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ + + L +A++ +RD +N+ G K L Y L I+G E PQ MR+A+G+
Sbjct: 120 IYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIH 179
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
+ + AI+ YNL+S F ++PTLFN+GT R QLSSC+L T+ DD + GI++++K
Sbjct: 180 GEDI---EAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLK 236
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
A++SK AG L + +R+ GS I GTNG S G++P ++V N+ A V+QGG KR GA
Sbjct: 237 MCAMISKTAGVLVFNIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGA 296
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
AYLE WH D+ +F+ELRK G++ R M A+W+PDLFM+RV + WT F P +
Sbjct: 297 FAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFCPNEA 356
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G EF Y YE + + G+ + + A +W IL ETG+P++ +KD+C
Sbjct: 357 PGLADVWGDEFVALYEKYEKENR-GR----RSLPAQKVWYAILQSQVETGNPFMLYKDSC 411
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N +S Q++VG I SSNLCTEI +S +E+ VCNL S+ L +K+GK + KL +++
Sbjct: 412 NRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKV 471
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
R L+ +ID+NYY V +A+ SN+RHRPVGLG+ G D +++P+ S A K Q
Sbjct: 472 VTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIF 531
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I + A AS E+A+ +G Y SY+GS QGIL D VN ++ +
Sbjct: 532 ETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYD------------MWNVNPTDLWD 579
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W + + +I K G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N +
Sbjct: 580 WAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPW 639
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
L+K+L ++ LW+E M L DG++ I IP DL+ +Y T +EIS +I+ + R
Sbjct: 640 LLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGP 699
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVN 711
+IDQSQSLNI++ + S K+ + W +GLKT YYLR+++A+ A K +D V
Sbjct: 700 FIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIK----FTVDPVA 755
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSE 738
L + + +N + + N K I++E
Sbjct: 756 LRARNEESNEENKKPVIKNGKAEISAE 782
>gi|89890042|ref|ZP_01201553.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
bacterium BBFL7]
gi|89518315|gb|EAS20971.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
bacterium BBFL7]
Length = 828
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 266/637 (41%), Positives = 394/637 (61%), Gaps = 20/637 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ RD ++Y G K L Y L I G E PQ MR+++G+ +++ +
Sbjct: 126 NADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGKIAERPQHMLMRVSVGIHMDDLD-- 183
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ Y L+S F +TPTLFN+GT + Q+SSC+L T+ DD + GI++++K+ A +S+
Sbjct: 184 -AAIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEGIYDTLKQTAKISQ 242
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +R+ GS I GTNG S G++P LKV ND A V+QGG KRKG+ Y+E
Sbjct: 243 SAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGGGKRKGSFAIYMEP 302
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +F++L+KN G + R D+ A+W+ DLFMKRV TWTL P++ PDL+N +
Sbjct: 303 WHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTLMCPHECPDLYNVY 362
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE Y YE + K G+ K I A LW KIL ETG P++ +KDA N +S Q+
Sbjct: 363 GDEFEALYTKYEQEGK-GR----KTIQARELWDKILESQIETGTPYMLYKDAANNKSNQK 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
++G I SSNLCTEI TS +E+ VCNL SI L + +K+G D L K + R L+
Sbjct: 418 NLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKDGAFDHKALYKVTKRVTRNLNK 477
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID NYY V +A+ SN+RHRPVGLGI G D ++++P++S EA K + E + + A
Sbjct: 478 VIDRNYYPVIEARNSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKKLNSEIFETLYFAA 537
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS E+A+E+G YS+++GS QG + + + + ++ NW LR +
Sbjct: 538 CEASMEMAQEEGAYSTFEGSPMSQGEFQFNMWNINDSDLSGRW---------NWSDLRTK 588
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+ + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+K+L
Sbjct: 589 VMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIVVNKHLLKDLVD 648
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD+S+ + +G++ I IP+D++++Y T +E+ II+ R +IDQSQS
Sbjct: 649 LGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSRQRGYFIDQSQS 708
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
LN+++ N + KL + AW GLKT YYLR+ +A
Sbjct: 709 LNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAA 745
>gi|348555237|ref|XP_003463430.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Cavia porcellus]
Length = 792
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLFNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYERYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEKMKNQIIACNGSIQTILEIPDDLKQLYKTVWEISQKTVLKMAAD 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|347535525|ref|YP_004842950.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
branchiophilum FL-15]
gi|345528683|emb|CCB68713.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
branchiophilum FL-15]
Length = 796
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 279/698 (39%), Positives = 417/698 (59%), Gaps = 40/698 (5%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N + L + ++ RD ++Y G K L Y L I G +E PQ MR+A+G+ LN+ +
Sbjct: 126 NAAFLDSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHLNDLD-- 183
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
I+ Y+L+S F +TPTLFN+GT + Q+SSC+L + DD + GI++++K+ A +S+
Sbjct: 184 -SVIETYDLMSKKYFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQ 242
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ Y+ET
Sbjct: 243 SAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYIET 302
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EF++L+KNTG + R D+ A+W DLFMKRV + + WTL P + P L+ +
Sbjct: 303 WHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDAHWTLMCPNECPGLYEVY 362
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G++FE Y YE Q K G+ K I A LW KIL ETG P++ +KDA N +S Q+
Sbjct: 363 GEQFETLYTSYEIQGK-GR----KTIKARELWEKILESQIETGTPYMLYKDAANQKSNQK 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
++G I SSNLCTEI TSK+EI VCNL S++L + ++ GK + L K + R L+
Sbjct: 418 NLGTIRSSNLCTEIMEYTSKDEIAVCNLASLSLPMFVEKGKFNHKLLYKVAKRVTRNLNK 477
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID NYY VK+ + SN+RHRP+GLG+ G D ++++P++S EA K + E + + A
Sbjct: 478 VIDRNYYPVKEGENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNQEIFETLYFAA 537
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS E+A+E G YS+Y+GS QG+ + L + ++S +W LR
Sbjct: 538 VTASMEMAKEDGAYSTYEGSPISQGLFQYNLWGLQD---------ADLSGRWDWASLRKE 588
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+ ++G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+ +L K
Sbjct: 589 VLQYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLNDLVK 648
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+W + + + +G++ I+ IP DL+++Y T +E+S II+ R ++DQSQS
Sbjct: 649 LGIWTDDLKQEIMRQNGSVQNINAIPKDLKELYKTVWEMSMKDIIDMSKHRGYFVDQSQS 708
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGID------SVNL 712
LN+++ + + KL + AW GLKT YYLR+ SA A K F + D +V+L
Sbjct: 709 LNLFMQDANYAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAIK--FTLNNDKKEAPATVDL 766
Query: 713 DEISI--KGYNKNLQEIKNNKKCLINSEINDVNECESC 748
I + Y + L+ KN D ECE C
Sbjct: 767 HTTPIHKEDYRRMLELAKN----------ADPEECEMC 794
>gi|386285239|ref|ZP_10062455.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp.
AR]
gi|385343758|gb|EIF50478.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp.
AR]
Length = 789
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/749 (38%), Positives = 419/749 (55%), Gaps = 108/749 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL +Y + V G +E+F + +G +++ +++L
Sbjct: 72 PDWTFVAARLFLYDLYHRVTGFTGYN-----HLREHFERGEKEG---RVVLGLKDKYDLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERDLQFNYLG++ LYDRY L G IE+PQ FM +AM L+ NE + +
Sbjct: 124 DLNDYIKPERDLQFNYLGIRTLYDRYLLKDRNGTPIELPQQLFMGVAMFLAQNEFDCQTW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY++LS F M +TPTL N+ T R QLSSCY+ + PD++ GIF+ KE ALLSK+ G
Sbjct: 184 AKKFYDILSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDGYKEMALLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW+ VR +GS I G + G++PFLK+ NDVA+AV+Q G RKGAI Y+E WH+D
Sbjct: 244 GIGWDWSLVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLGTRKGAIAVYIEPWHVD 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +F++L+KN+G++RRR HD+ AIW+ DLFMKRV WTLF P++V +L +G+ F
Sbjct: 304 VRDFLDLKKNSGEERRRAHDLFPAIWLNDLFMKRVEADEMWTLFDPFEVTELTTLYGEAF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E YI EN KI ++ISA LW+++L FETG+P++TFKD N +P +H GI
Sbjct: 364 EARYIELENSDD--KITR-ERISAKSLWKEMLRSYFETGNPFLTFKDTANRANPNKHAGI 420
Query: 364 IHSSNLCTEITLNTSKN--------EIGVCNLGSINLTLHMKNGKLDPIK---------- 405
I S+NLCTEI NT+ N E G + L + NG P K
Sbjct: 421 IRSTNLCTEIFQNTAPNTYKTRFTFEDGTTAAYDEDEMLTVDNGTTKPAKKVTALDSLNG 480
Query: 406 ---------------------------------LKKTIRIAMRMLDNVIDINYYAVKKAK 432
+++ + A+RMLDNVID+N+Y + K K
Sbjct: 481 KQIWIVDKEKTDGDTAVCNLASVNLAKVNTKEDMERVVPTAIRMLDNVIDLNFYPLAKVK 540
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N + R +GLG+MG L +I + S + D+ ME YYA +S+ LA EKG
Sbjct: 541 KTNEKSRSIGLGVMGESQMLAEHQIEWGSHDHFTKIDEVMESFSYYAIESSSNLALEKGC 600
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y +++GS W +GI P D + KL+ +RG + + +W+ L+ ++K GMRN
Sbjct: 601 YPNFEGSDWSKGIFPIDKANENACKLV--DRGGLF-----GYTHDWQGLKEKVKSDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS + G + +IEP Y+ + NLSG + L
Sbjct: 654 GYLMAIAPTSSISILTGTTQAIEPVYKRKWFEENLSGLIPVVAPNLTA------------ 701
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
D + Y ++++ N +++AG++RQKW+DQ QSLNI+I+
Sbjct: 702 -------------------DTWQYYTPSYDLDQNLLVKAGAIRQKWLDQGQSLNIFITLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSIS 694
SGK L+E Y AW GLK+TYYLRS S
Sbjct: 743 KASGKYLNEIYMNAWKFGLKSTYYLRSQS 771
>gi|341877710|gb|EGT33645.1| CBN-RNR-1 protein [Caenorhabditis brenneri]
Length = 786
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/642 (42%), Positives = 393/642 (61%), Gaps = 24/642 (3%)
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
+ E N L++A++ +RD + Y G K L Y L I +E PQ MR+A+G+ N+
Sbjct: 129 IIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEVVERPQQMLMRVAIGIHGND 188
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ A
Sbjct: 189 I---AAAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCA 245
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
L+SK AGG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA
Sbjct: 246 LISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAI 305
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+ EF+ LRKNTG + R D+ +A+WVPDLFMKRV K W+L P + P L
Sbjct: 306 YLEPWHADVFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQDWSLMCPCECPGL 365
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE+ Y YE + + K+ + A LW I+S ETG P+IT+KDA N +
Sbjct: 366 DDCWGEEFEKLYTRYEAEGRFRKV-----VKARKLWEHIVSNQIETGLPYITYKDAANRK 420
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAM 414
S QQ++G I SNLCTEI ++ +EI VCNL SI L + K D KL + ++
Sbjct: 421 SNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRFVTPEKTFDFKKLAEVTKVIT 480
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++S+ A + E
Sbjct: 481 KNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRFPFTSEGARDLNKRIFET 540
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELAE+ G YS+Y GS +G L D V ++ NW
Sbjct: 541 IYYAALEASCELAEKDGPYSTYQGSPVSKGQLQFD------------MWGVTPTDQCNWN 588
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +I K G+RNS +A PTA+ + I+G + SIEP N++ + LSG+F +N +++
Sbjct: 589 ALRQKIAKHGVRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHML 648
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L ++GLW + M L +G++ I IPDD++++Y T +EIS IIE + R +I
Sbjct: 649 KDLVERGLWSDEMKNRLIANNGSIQNIPGIPDDIKELYRTVWEISQKEIIEMAADRGAFI 708
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
DQSQSLNI+++ S + + W +GLKT YYLR+ A
Sbjct: 709 DQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPA 750
>gi|426245029|ref|XP_004016318.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Ovis
aries]
Length = 791
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLFNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ LYE K G+++ K I A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEK---LYERYEKEGRVR--KVIKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWSLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|403262128|ref|XP_003923447.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 2 [Saimiri boliviensis boliviensis]
Length = 695
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 269/638 (42%), Positives = 395/638 (61%), Gaps = 24/638 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 30 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID-- 87
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 88 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 146
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 147 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 206
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 207 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 266
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD+CN +S QQ
Sbjct: 267 GEEFEKLYESYEKQRRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 321
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+
Sbjct: 322 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLN 381
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 382 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 441
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA+E G Y +Y+GS +GIL D V ++ +WK L+
Sbjct: 442 ALEASCDLAKEHGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWKLLKE 489
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L
Sbjct: 490 KIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLT 549
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQ
Sbjct: 550 ERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQ 609
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 610 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 647
>gi|15227096|ref|NP_179770.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis
thaliana]
gi|56749666|sp|Q9SJ20.1|RIR1_ARATH RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleoside-diphosphate reductase R1
subunit; Short=AtRNR1
gi|4417273|gb|AAD20398.1| putative ribonucleoside-diphosphate reductase large subunit
[Arabidopsis thaliana]
gi|14334814|gb|AAK59585.1| putative ribonucleoside-diphosphate reductase large subunit
[Arabidopsis thaliana]
gi|30793895|gb|AAP40400.1| putative ribonucleoside-diphosphate reductase large subunit
[Arabidopsis thaliana]
gi|330252128|gb|AEC07222.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis
thaliana]
Length = 816
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 292/775 (37%), Positives = 431/775 (55%), Gaps = 63/775 (8%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + ++ G+ + L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIKDM--------FYHVNDRSGLKSPLIADDVFEI 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + L + ++ +RD +++Y G K L Y L ++G +E PQ MR+A+G+ ++
Sbjct: 124 IMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ I+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI+E++KE A+
Sbjct: 184 D---SVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+ EF+ELRKN G + R D+ A+W+PDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE Y YE + K K+ + A LW +IL+ ETG P++ FKD+CN +S
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKV-----VQAQQLWYEILTSQVETGTPYMLFKDSCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL--------------------TLHM 396
QQ++G I SSNLCTEI TS E VCNL SI L +L
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +ID+NYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I Y+A ASTELA G Y +Y GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
+R +W LR+ I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 DR------------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L GLW ++ L +G++ ++ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ + R +IDQSQSLNI++ + KL + W +GLKT YYLRS +A
Sbjct: 704 EIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDE-ISIKGYNKNLQEIKNNKK-CLINSEINDVNECESC 748
A K +D+ L E S+ +K ++E N K + + + EC +C
Sbjct: 764 ADAIK----FTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814
>gi|388454038|ref|NP_001252816.1| ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
gi|355566819|gb|EHH23198.1| Ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
gi|355752416|gb|EHH56536.1| Ribonucleoside-diphosphate reductase large subunit [Macaca
fascicularis]
gi|380815414|gb|AFE79581.1| ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
gi|383420603|gb|AFH33515.1| ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
Length = 792
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/707 (40%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W L+ I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|213409966|ref|XP_002175753.1| ribonucleoside-diphosphate reductase large chain
[Schizosaccharomyces japonicus yFS275]
gi|212003800|gb|EEB09460.1| ribonucleoside-diphosphate reductase large chain
[Schizosaccharomyces japonicus yFS275]
Length = 824
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 274/659 (41%), Positives = 398/659 (60%), Gaps = 32/659 (4%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L +A++ +RD +NY G K L Y L I+G E PQ MR+A+G+ ++ + AI
Sbjct: 131 LDSAIIYDRDFTYNYFGFKTLERSYLLRIDGKVAERPQHLIMRVAVGIHHDDI---EAAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YN +S F ++PTLFN+GT R QLSSC+L T+ DD + GI+E++K A++SK AGG
Sbjct: 188 ETYNYMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYETLKTCAMISKTAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA AYLE WH D
Sbjct: 248 IGINIHNIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAAYLEPWHPD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +F+ELRK G + R ++ A+W+PDLFM+RV K W+ F P + P L + +G+EF
Sbjct: 308 VLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWSFFCPNEAPGLADVWGEEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
EE Y YE + + ++ + A +W +I+ ETG+P++ +KD+CN +S Q+++G
Sbjct: 368 EELYERYEREGRARRV-----LPAQKVWYEIIRAQSETGNPFMLYKDSCNRKSNQKNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI +S +E+ VCNL SI L + + +GK D +L ++ R L+ VID+
Sbjct: 423 IRCSNLCTEIVEYSSPDEVAVCNLASIALPMFIHDGKYDFQQLHNVAKVVTRNLNRVIDV 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY V +A+ SNLRHRPVGLG+ G D ++ PY S EA K E I + A AS
Sbjct: 483 NYYPVPEARRSNLRHRPVGLGVQGLADAFFKLRYPYESPEARKLNLLIFETIYHAALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELA E+G Y +Y+GS QGIL D V ++ +W L+ +I K
Sbjct: 543 CELAAEEGPYETYEGSPASQGILQYD------------MWNVTPTDLWDWASLKAKIAKH 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N +L+++L GLW
Sbjct: 591 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLRDLVDLGLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
DE M L +DG++ I IP DL+ +Y T +EIS +I+ + R +IDQSQSLNI+
Sbjct: 651 DEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWEISQRTVIDYAADRGAFIDQSQSLNIH 710
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYN 721
I + S K+ + W +GLKT YYLR+++A+ A K +D +S+K N
Sbjct: 711 IKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAASAAIK---------FTVDPLSVKQTN 760
>gi|124003381|ref|ZP_01688231.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
marina ATCC 23134]
gi|123991479|gb|EAY30910.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
marina ATCC 23134]
Length = 808
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/704 (40%), Positives = 422/704 (59%), Gaps = 34/704 (4%)
Query: 3 KDPVYSQVTARLLMYCIQK---EVFGKEIKQIDIPIKYKEYFSKFINK--GIDNKLLNPK 57
K P Y+ + AR+ + + K +VF K +K++ EY + G+ + +
Sbjct: 70 KHPDYAILAARIAISNLHKTTSKVFSKTMKEL------YEYIDPKTGEKAGLISDETHAA 123
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
+ + N ++L ++++ +RD ++Y G K L Y L ++G +E PQ MR+A+G+ +
Sbjct: 124 IQK-NAAVLDSSIIYDRDYNYDYFGFKTLERSYLLKMDGQVVERPQHMLMRVAVGIHGED 182
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
++ ++ Y LLS F +TPTLFN+GT + QLSSC+L T+ DD + GI++++K+ A
Sbjct: 183 VDK---VLETYELLSGKWFTHATPTLFNAGTPKPQLSSCFLLTMQDDSIEGIYDTLKQCA 239
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
+S+ AGG+G VR+ GS IKGTNG S GVIP LKV ND A V+QGG KRKGA
Sbjct: 240 KISQSAGGIGLSIHNVRATGSYIKGTNGTSNGVIPMLKVFNDTARYVDQGGGKRKGAFAI 299
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI EF++L+KN G + R D+ A+W+ DLFMKRV TW+LF P + P L
Sbjct: 300 YLEPWHADIFEFLDLKKNHGKEELRARDLFYAMWLSDLFMKRVENDDTWSLFCPNEAPGL 359
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H +G+EFE+ Y YE + + K+ I A LW KIL ETG P++ +KDA N +
Sbjct: 360 HEVYGEEFEKLYEQYELEGRARKV-----IKAQDLWFKILESQIETGTPYMLYKDAANEK 414
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
S Q+++G I SSNLCTEI TSK+E+ VCNL SI L + +GK D KL + ++ R
Sbjct: 415 SNQKNLGTIKSSNLCTEIMEYTSKDEVAVCNLASIALPKFVIDGKFDHQKLYEVTQVVTR 474
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
L+ +IDINYY VK+A+ SNLRHRP+G+G+ G D ++++P+ S+EA E I
Sbjct: 475 NLNRIIDINYYPVKEAENSNLRHRPIGIGVQGLADTFMMLRMPFDSEEAKGLNKDIFETI 534
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+ + AS ELA+++G Y SY GS +GI Q + ++ E G +W+
Sbjct: 535 YFASMTASMELAQKEGAYESYKGSPVSEGIF-QFDMWGVKPESG----------RWDWQA 583
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR +KK G RNS +A PTA+ S I+G + EP N++ + LSGEF +N++L+
Sbjct: 584 LRKDVKKHGARNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLN 643
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+L + LW M +K +G++ I IP +L+ IY T +EI +++ + R +I
Sbjct: 644 DLVELNLWGGDMENRIKAANGSVQNIPEIPQNLKDIYKTVWEIKQKDVVDMAADRGAFIC 703
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
QSQSLNI++ N + KL + AW +GLKT TYYLR+ +A A
Sbjct: 704 QSQSLNIHMENPTFGKLTSMHFYAWKKGLKTGTYYLRTKAAAKA 747
>gi|149719333|ref|XP_001499936.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
[Equus caballus]
Length = 792
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 419/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KPTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ S AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 I---HSEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L + + + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTSEHTYDFQKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +L+ E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLSREDGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS I++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWEISQKTILKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|402894482|ref|XP_003910385.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 1 [Papio anubis]
Length = 792
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/707 (39%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K+ Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKVXXRSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W L+ I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|395802145|ref|ZP_10481398.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
sp. F52]
gi|395435386|gb|EJG01327.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
sp. F52]
Length = 797
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/753 (37%), Positives = 442/753 (58%), Gaps = 37/753 (4%)
Query: 5 PVYSQVTARLL---MYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP---KL 58
P Y+Q+ AR+ ++ K+ F + +K + Y G D L+ K+
Sbjct: 71 PDYAQLAARVAISNLHSNTKKSFSETMKDM--------YHYVNPRNGQDAPLIADDVYKV 122
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+ N + L + ++ RD ++Y G K L Y L I G +E PQ MR+++G+ L++
Sbjct: 123 IQENAAFLDSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLDDL 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
K I+ Y+L+S F +TPTLFN+GT + Q+SSC+L + +D + GI++++K+ A
Sbjct: 183 ---KSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQEDSIDGIYDTLKQTAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 240 ISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIY 299
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
+ETWH DI +F++L+KN G + R D+ A+W DLFMKRV + WTL P + P L+
Sbjct: 300 IETWHADIFDFLDLKKNHGKEEMRARDLFFAMWTSDLFMKRVQEDGPWTLMCPNECPGLY 359
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE Y YE Q K G+ K I A LW KIL ETG P++ +KDA N +S
Sbjct: 360 DVYGDEFEALYTGYEAQGK-GR----KTIRARELWEKILESQIETGTPYMLYKDAANRKS 414
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
+++G I SSNLCTEI TSK+EI VCNL SI+L + ++NG+ + L + R
Sbjct: 415 NHKNLGTIRSSNLCTEIMEFTSKDEIAVCNLASISLPMFVENGEFNHESLYNVTKRVTRN 474
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY V++A+ SN+RHRPVGLG+ G D ++++P++S EA K + E +
Sbjct: 475 LNKVIDRNYYPVQEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKKLNQEIFETLY 534
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS E+A+E+G YS+++GS +G + L ++E ++ +W L
Sbjct: 535 FAAVTASMEMAKEEGPYSTFEGSPMSKGEFQYNMWGLKDEELSGRW---------DWASL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R + + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+++
Sbjct: 586 RKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLED 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L K GLW+E + + +G++ I+ IP DL+ +Y T +E+S II+ R +IDQ
Sbjct: 646 LVKLGLWNEDLKQEIMRHNGSVQNINIIPQDLKDLYKTVWEMSMKDIIDMSRQRGYFIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLN+++ + + KL + AW GLKT YYLR+ +A A K F + D
Sbjct: 706 SQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIK--FTLNNDKKQETAP 763
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
S+ +++ +++ K L+ ++ D +CE C
Sbjct: 764 SLVQKTESIS-VEDYKAMLLKAQAADPEDCEMC 795
>gi|61557388|ref|NP_001013254.1| ribonucleotide reductase M1 [Rattus norvegicus]
gi|55250768|gb|AAH85906.1| Ribonucleotide reductase M1 [Rattus norvegicus]
gi|149068638|gb|EDM18190.1| ribonucleotide reductase M1 (mapped), isoform CRA_b [Rattus
norvegicus]
Length = 792
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/707 (39%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 SSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IP+DL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|149916692|ref|ZP_01905194.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
pacifica SIR-1]
gi|149822409|gb|EDM81798.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
pacifica SIR-1]
Length = 792
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/762 (37%), Positives = 423/762 (55%), Gaps = 61/762 (8%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDN-KLLNPKLAEF 61
++P YS++ AR+L I +E + + + E + G+ N + LN A
Sbjct: 77 EEPDYSKLAARILAGAIAREAASQGVTSF---LNSVETLHRL---GLGNARALN--FARA 128
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNESN 119
+ + L AL E D +F Y GL+ ++DRY + R +E PQ FFMR+A L+++
Sbjct: 129 HAATLEAALDREGDRRFEYFGLRTVFDRYLMRHPKTRRVLETPQHFFMRVAAALAVDPDE 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENALL 178
A+ Y L S +++ S+PTLFN+GT R QLSSC+L P D L I+E + A L
Sbjct: 189 ----AVALYGLFSRLDYLPSSPTLFNAGTHREQLSSCFLLDSPADHLVDIYERYTDVAKL 244
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238
SK++GG+G + +VRS GS I TNG S G++P+LK ++ AVNQGG+RKGA C YLE
Sbjct: 245 SKFSGGIGLAYHRVRSRGSLIGDTNGHSNGIVPWLKTLDASVAAVNQGGRRKGACCVYLE 304
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
TWH D+ EF+ELR NTG++ R H++N+A W+PD FM+RV W+LF P V +
Sbjct: 305 TWHADLPEFLELRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFDPKTVRHFPDL 364
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G+ F +Y+ E + A L+ +++ L +TG+ W+ FKD CN Q
Sbjct: 365 YGEAFTRAYVEAERAGLA-----VATLPARELYARMMRTLAQTGNGWMCFKDRCNSTCNQ 419
Query: 359 --QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---------NGKLDPIKLK 407
+ +H SNLCTEI TS E VCNLGSINL H++ + ++D KL
Sbjct: 420 TARPGRTVHLSNLCTEIVEVTSPEETAVCNLGSINLGHHLRPIDGGGTQADWEVDWAKLG 479
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+++ +A+R LD VID+N+Y ++ A SN R RPVGLG MG D L + + + S A +
Sbjct: 480 RSVTLAVRALDRVIDLNFYPLETAAKSNARWRPVGLGTMGLHDLLLRLGLDFDSPAAREL 539
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
A + E + ++A S +LA + G + ++ + G L D V
Sbjct: 540 ARRVAEHVYFHALRTSCDLARQHGPHPAFPETRAADGQLQFD------------LWGVEP 587
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
E L W LR + G+RNS VA+APTATI++I G IEP NL + LSGEF
Sbjct: 588 GEDLPWDTLRRDVASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLVKRETLSGEFI 647
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
++NRYL+ EL++ GLWDE+M A LK +G++ I+R+P+ LR+ + TA+E+ +I+
Sbjct: 648 QVNRYLIDELRRLGLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWELPMRALIDMA 707
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI 707
+ R +IDQSQSLN+++ + +L Y AW GLKTTYYLRS A+ GI
Sbjct: 708 AARGPFIDQSQSLNLFVESPDLTRLSAMYFYAWKAGLKTTYYLRSRPAS---------GI 758
Query: 708 DSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
+D + K ++ + + + + CE+CQ
Sbjct: 759 AKATVDPANAKPKQRSAEALA--------CSLENPEACEACQ 792
>gi|340617899|ref|YP_004736352.1| ribonucleoside-diphosphate reductase, large subunit [Zobellia
galactanivorans]
gi|339732696|emb|CAZ95964.1| Ribonucleoside-diphosphate reductase, large subunit [Zobellia
galactanivorans]
Length = 828
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 281/700 (40%), Positives = 415/700 (59%), Gaps = 34/700 (4%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP---KL 58
P Y+++ AR+ + + K F + +K + EY + NK LL+ K+
Sbjct: 71 PDYAKLAARISVSNLHKNTKKSFSETMKDL------YEYVNPRTNKKA--PLLSDEVYKV 122
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N L + ++ RD ++Y G K L Y L I G E PQ MR+++G+ LN+
Sbjct: 123 ISENSERLDSTIIYNRDFGYDYFGFKTLERSYLLKINGKIAERPQHMLMRVSVGIHLNDL 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ Y L+S F +TPTLFNSGT + Q+SSC+L + DD + GI++++K+ A
Sbjct: 183 D---AAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G VR+ GS I GTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 240 ISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGGGKRKGSFAIY 299
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
+E WH DI F++L+KN G + R D+ A+W+ DLFM+RV WTL P + P L
Sbjct: 300 MEPWHADIYAFLDLKKNHGKEEMRARDLFYAMWISDLFMRRVEANEEWTLMCPNECPGLF 359
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+EFEE Y+ YE + K G+ K + A LW KIL ETG P++ +KDA N +S
Sbjct: 360 THHSEEFEELYLKYEAEGK-GR----KTVKARELWEKILESQIETGTPYMLYKDAANRKS 414
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
Q+++G I SSNLCTEI TS +E+ VCNL SI L + +KNG D +L K + R
Sbjct: 415 NQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGSFDHKELFKVTKRVTRN 474
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY VK+A+ SN+RHRP+GLG+ G D ++++P++S EA K + E +
Sbjct: 475 LNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNQEIFETLY 534
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS E+A+E+G YS+++GS QG + + ++E ++ +W+KL
Sbjct: 535 FAAVTASMEMAKEEGPYSTFEGSPISQGEFQHNLWGVKDEELSGRW---------DWEKL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +KK G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N++L+++
Sbjct: 586 RKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLED 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L GLW+E+M L +G++ I IP D+R +Y T +E+S II+ R +IDQ
Sbjct: 646 LVNLGLWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSRQRGYFIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLN+++ N + KL + AW GLKT YYLR+ +A
Sbjct: 706 SQSLNLFMENANYAKLTSMHFYAWKSGLKTGMYYLRTKAA 745
>gi|42490975|gb|AAH66217.1| Ribonucleotide reductase M1 [Mus musculus]
Length = 792
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/707 (40%), Positives = 419/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 SSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS ELA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYD------------MWNVAPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++ T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|431919136|gb|ELK17888.1| Ribonucleoside-diphosphate reductase large subunit [Pteropus
alecto]
Length = 799
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/707 (40%), Positives = 421/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 78 KHPDYAILAARVAVSNLHKETKKVFSDVM----------EDLYNYINP--HNSKHSPMVA 125
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 126 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 185
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ +E + E AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 186 I--HEEDIE-AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 242
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 243 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 302
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 303 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQEWSLMCPN 362
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 363 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 417
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 418 SCNRQSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFKKLAEV 477
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 478 TKVIVRNLNKIIDINYYPIPEAYLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 537
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y GS +GIL D V ++
Sbjct: 538 QIFETIYYGALEASCDLAKEHGPYETYKGSPVSKGILQYD------------MWNVTPTD 585
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 586 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 645
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++
Sbjct: 646 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAVE 705
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 706 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 752
>gi|413953007|gb|AFW85656.1| hypothetical protein ZEAMMB73_966032 [Zea mays]
Length = 815
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 292/773 (37%), Positives = 431/773 (55%), Gaps = 60/773 (7%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + + +F+K G+ L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIKDMYM------HFNK--RSGLMAPLVAEDVYEI 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + L + ++ +RD ++Y G K L Y L ++G +E PQ MR+++G+ +
Sbjct: 124 IMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKLDGKVVERPQHMLMRVSLGIHKEDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI+E++KE A+
Sbjct: 184 ---ESAIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYETLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGSSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI EF++LRKN G + R D+ A+WVPDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+EF+ Y YE+Q K K+ + A LW IL ETG P++ +KD CN +S
Sbjct: 361 DSWGEEFDNLYKKYESQGKAKKV-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-------------------- 396
QQ++G I SSNLCTEI TS E VCNL SI L +
Sbjct: 416 NQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIALPRFVREKDVPLESHPSKLVGSSDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +IDINYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I Y+A AS ELA ++G Y +Y+GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYYHALKASAELAAKEGPYETYEGSPVSKGILQPDMWDVVPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
R NW LR I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 NR------------WNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L + G+W ++ + Y DG++ +I+ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ R +IDQSQSLN+++ + KL + AW +GLKT YYLR+ +A
Sbjct: 704 EIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
A K + + N + +S K +E + K + +N+ EC +C
Sbjct: 764 ADAIKFTVDTTLLKENGNGVSD---GKPAEEDVDAKMAQMVCSLNNREECLAC 813
>gi|253827680|ref|ZP_04870565.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
canadensis MIT 98-5491]
gi|313141891|ref|ZP_07804084.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
98-5491]
gi|253511086|gb|EES89745.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
canadensis MIT 98-5491]
gi|313130922|gb|EFR48539.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
98-5491]
Length = 790
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 303/752 (40%), Positives = 413/752 (54%), Gaps = 113/752 (15%)
Query: 5 PVYSQVTARLLMYCIQKEVFG----KEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
P ++ V ARL +Y + V G K +K+ Y E K +N+++ +
Sbjct: 72 PNWTFVAARLFLYDLYHRVNGFNGYKSLKE------YLEIGEK------ENRIIKGMKEK 119
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESN 119
FNL L+ + P+RDLQF YLG+K LYDRY L +G IE+PQ FM IAM L+ NE +
Sbjct: 120 FNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGQPIELPQHMFMAIAMFLAQNEKD 179
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
A +FY+LLS F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLS
Sbjct: 180 PTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEGIFDSYKEMALLS 239
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
KY GG+G D++++R LGS I G + GVIPFLK+ ND+A+AV+Q G RKGAI YLE
Sbjct: 240 KYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQLGTRKGAIAVYLEP 299
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +F++++KN+G++RRR HD+ A+W+PDLFMKRV + W LF DL N +
Sbjct: 300 WHSDIFDFVDIKKNSGEERRRAHDLFPALWIPDLFMKRVAEDGLWNLFDALTCADLTNLY 359
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+ FE+ Y YEN + K + I A LW++IL+ FE G P++ FKD N +P
Sbjct: 360 GEAFEKRYKEYENNPDIPK----ETIKAKDLWKRILTSYFEVGSPFLCFKDNANRANPNS 415
Query: 360 HVGIIHSSNLCTEITLNTSKN------------------------EIGVCNLGSINLTLH 395
H GII SSNLCTEI NT N + G+ + +
Sbjct: 416 HTGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIEDYEEYQEVKTDCGIIKSSNKITSTD 475
Query: 396 MKNGK------------------LDPIKLKK---------TIRIAMRMLDNVIDINYYAV 428
NGK L I L K + +A+RMLDNVID+N+Y
Sbjct: 476 SINGKKVFIAQRESIDGKTAVCNLASINLSKINTKEDIERVVPVAIRMLDNVIDLNFYPN 535
Query: 429 KKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAE 488
+K K +NL R +GLG+MG L KI + S++ ++ D+ MEMI Y A AS +LA+
Sbjct: 536 RKVKVTNLDTRAIGLGVMGEAQMLAENKIQWGSQKHLEKIDEIMEMISYNAISASCKLAQ 595
Query: 489 EKGRYSSYDGSLWDQGILPQDSLKLLEK---ERGSKYLKVNMSESLNWKKLRNRIKKFGM 545
EKG Y+ + S W +GI P D K +RG + V +W LR +K G+
Sbjct: 596 EKGVYNDFANSSWSKGIFPIDKANSEAKALVDRGGLFGFV-----YDWDSLREEVKTKGI 650
Query: 546 RNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDE 605
RN +AIAPT++IS ++G + +IEP Y+ + NLSG + L E
Sbjct: 651 RNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE--------- 701
Query: 606 SMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS 665
N Y Y +A+EI II+A ++RQKWIDQ QS NI+IS
Sbjct: 702 ----NWNY------------------YTSAYEIDQTLIIKAAAIRQKWIDQGQSTNIFIS 739
Query: 666 --NKSGKKLDETYKLAWLRGLKTTYYLRSISA 695
SG+ L++ Y LAW GLK+TYYLRS S
Sbjct: 740 LDKASGRYLNDIYSLAWRLGLKSTYYLRSQSV 771
>gi|291384376|ref|XP_002708776.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
[Oryctolagus cuniculus]
Length = 792
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/707 (39%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYSYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTE+ TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTPEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+G +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEHGPYETYEGCPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|62897131|dbj|BAD96506.1| ribonucleoside-diphosphate reductase M1 chain variant [Homo
sapiens]
Length = 792
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 281/707 (39%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKTNGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFGTIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+++ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|436833879|ref|YP_007319095.1| ribonucleoside-diphosphate reductase, alpha subunit [Fibrella
aestuarina BUZ 2]
gi|384065292|emb|CCG98502.1| ribonucleoside-diphosphate reductase, alpha subunit [Fibrella
aestuarina BUZ 2]
Length = 825
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/710 (40%), Positives = 421/710 (59%), Gaps = 37/710 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKE-YFSKFINKGIDNKLLNPKL 58
K P Y+ + AR+ + + KE F IK++ I K + I+K + + + N
Sbjct: 70 KHPDYAILAARVAISNLHKETNKSFSGTIKRLYTYIDPKTGENASLISKEVYDVIRN--- 126
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N ++L + ++ +RD ++Y G K L Y L I+G E PQ MR+A+G+ +++
Sbjct: 127 ---NAAVLDSTIIYDRDYGYDYFGYKTLEKSYLLKIDGRIAERPQHMLMRVAVGIHMDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ YNLLS F +TPTLFN+GT + Q+SSC+L T+ DD + GI++++K+ A
Sbjct: 184 D---AAIETYNLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIEGIYDTLKQTAK 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G VR+ G+ IKGTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 241 ISQSAGGIGLSIHNVRATGTYIKGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI +F++L+KN G + R D+ AIW PDLFMKRV TW+LF P++ P L
Sbjct: 301 LEPWHADIFDFLQLKKNHGKEELRARDLFYAIWTPDLFMKRVEDNDTWSLFCPHECPGLS 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFEE Y YE + G+ + + + A LW +IL ETG P++ +KDA N +S
Sbjct: 361 DAYGDEFEELYTRYERE---GRAR--RTVKAQELWFEILEAQTETGTPYMLYKDAANRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIR 411
Q+++G I SSNLCTEI TS +E+ VCNL SI L + G + D KL + +
Sbjct: 416 NQKNLGTIKSSNLCTEIMEYTSPDEVAVCNLASIALPKFITKGTDGILRFDHQKLMEVTQ 475
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
IA R L+ +ID+NYY V++A+ SN+RHRP+GLG+ G D ++++P+ S EA + +
Sbjct: 476 IATRNLNKIIDLNYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPFESDEARRLNEDI 535
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y A AS ELA++ G Y ++ GS G D + K S
Sbjct: 536 FETIYYGAMTASMELAKKDGPYETWKGSPISNGEFQFDMWGVTPK-----------SGRW 584
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W LR ++ + G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N+
Sbjct: 585 DWNALRTQVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNK 644
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
+L+++L K GLW+E+M NL +G++ I IP L+ +Y T +EI II+ + R
Sbjct: 645 HLLRDLVKLGLWNEAMKNNLILANGSVQDIPNIPQHLKDLYKTVWEIKQKHIIDMAADRG 704
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
+I QSQSLNI+I + + KL + AW GLKT YYLR+ +A A K
Sbjct: 705 AYICQSQSLNIHIQDANFGKLTSMHFYAWKAGLKTGMYYLRTKAATDAVK 754
>gi|254457625|ref|ZP_05071053.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurimonas
gotlandica GD1]
gi|373867457|ref|ZP_09603855.1| ribonucleotide-diphosphate reductase, subunit alpha [Sulfurimonas
gotlandica GD1]
gi|207086417|gb|EDZ63701.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurimonas
gotlandica GD1]
gi|372469558|gb|EHP29762.1| ribonucleotide-diphosphate reductase, subunit alpha [Sulfurimonas
gotlandica GD1]
Length = 788
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/751 (37%), Positives = 416/751 (55%), Gaps = 105/751 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V +RL M+ + +V G K+YF K +G +LL ++L
Sbjct: 72 PNWTFVASRLFMFNLYHQVNG-----FTGYGSLKKYFEKGEKEG---RLLQGLADMYDLD 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L + PERD+ FNYLG+K LYDRY + IE+PQ FM IAM L+ E + +
Sbjct: 124 RLEKHIKPERDMLFNYLGVKTLYDRYLIKDRANNPIELPQHMFMAIAMFLAQREEEKHEW 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
AIKFY+++S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S E A+LSK+ G
Sbjct: 184 AIKFYDMVSQFQVMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYAEMAMLSKFGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DWT +RS+GS I G + G +PFLK+ ND+A+AV+Q G RKGAI Y+E WH+D
Sbjct: 244 GIGWDWTGIRSMGSYIDGHKNAAGGTVPFLKITNDIAIAVDQLGTRKGAIAVYMEPWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++L+KN+G++RRR HD+ A+W+ DLFM+RV + + WTLF PYD +L +G+EF
Sbjct: 304 INDFLDLKKNSGEERRRAHDLFPAMWLNDLFMQRVQEDAIWTLFDPYDTKELATLYGEEF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
+ Y E + K +K+ A LW+KIL+ FETG P++ FKD N +P HVG+
Sbjct: 364 NKRYKELEEDESIVK----EKVKAKNLWKKILTSYFETGSPFLCFKDNANRANPNNHVGV 419
Query: 364 IHSSNLCTEITLNTSKNE----------------------------------IGVCNLGS 389
I SSNLCTEI NT+ N + +LG
Sbjct: 420 IRSSNLCTEIFQNTNPNHYKIKFIFENGESISYEEDEIVKVDSGMEKPAKKVTALDSLGG 479
Query: 390 INLTLHMK---NGK-----LDPIKLKKT---------IRIAMRMLDNVIDINYYAVKKAK 432
+ + + K NG L + L + + IA+R LDNVID+N+Y ++K K
Sbjct: 480 LPIYVVEKEKINGDTAVCNLASVNLSRVNTKEDIDRIVPIAVRCLDNVIDLNFYPIEKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+N++ R +GLG+MG + L I + S+E D+ ME + + AS++LA EKG
Sbjct: 540 RTNMKSRSIGLGVMGEAEMLAEQSITWGSQEHFDKIDEIMEAVSFNTISASSDLALEKGI 599
Query: 493 YSSYDGSLWDQGILPQDSLKLLEK---ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
Y ++GS W +G++P D + +RG + + + W LR ++KK GMRN
Sbjct: 600 YPDFEGSQWSKGVMPMDHANAEVRNLVDRGGLF-----ASTYEWDDLRAKVKKQGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS + G + +IEP ++ + NLSG +
Sbjct: 655 LMAIAPTSSISILTGTTQAIEPVFKRKWFEENLSGLIPVV-------------------- 694
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
+ + + Y A+E++ +I+A ++RQKW+DQ QSLNI+I+
Sbjct: 695 -----------VPNLSPETWAYYTPAYELNQTLLIKAAAIRQKWLDQGQSLNIFITLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYA 698
SG+ L+E Y LAW GLK+TYYLRS S A
Sbjct: 744 SGRYLNEIYMLAWKLGLKSTYYLRSQSPEVA 774
>gi|388582671|gb|EIM22975.1| hypothetical protein WALSEDRAFT_31633 [Wallemia sebi CBS 633.66]
Length = 888
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/656 (40%), Positives = 397/656 (60%), Gaps = 27/656 (4%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N ++L +A+L +RD +N+ G K L Y L I G E PQ MR+A+G+ ++ R
Sbjct: 130 NRNVLDSAILYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGSDLER- 188
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
I+ YNL+S F ++PTLFN+GT Q+SSC+L T+ DD + GI++++K AL+SK
Sbjct: 189 --VIETYNLMSLKAFTHASPTLFNAGTPHPQMSSCFLVTMQDDSIEGIYDTLKSCALISK 246
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+ + A V+QGG KR GA YLE
Sbjct: 247 TAGGIGLNIHCIRATGSYIAGTNGSSNGIVPMLRAFDATARYVDQGGNKRPGAFAIYLEP 306
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH D+ EF++LRKN G + R D+ A+W+PDLFM+RV + W LF P++ P LH +
Sbjct: 307 WHPDVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMQRVQENGDWPLFCPHEAPGLHEVW 366
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
GKEFEE + YE + + ++ + A LW IL ETG P++ +KD N +S QQ
Sbjct: 367 GKEFEELFFKYEREGRAKRV-----VKAQKLWYSILDSQVETGGPFMLYKDHANAKSNQQ 421
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
++G I +SNLCTEI ++ +E+ VCNL SI L ++KNG+ D +L K ++ R L+
Sbjct: 422 NLGTIKNSNLCTEIIEYSAPDEVAVCNLASIALPSYIKNGQFDFNELHKVTKVLTRNLNR 481
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+ID+NYY VK+A SN+RHRP+GLG+ G D +++ P+SS+EA Q E I + A
Sbjct: 482 IIDVNYYPVKEAYNSNMRHRPIGLGVQGLADAFQLLRFPFSSEEARLLNKQIFETIYHAA 541
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+S+ELA+E G Y SY GS +G L D V + +W L+ +
Sbjct: 542 VESSSELAQEFGVYESYHGSPASKGQLQYD------------LWNVTPTGLWDWTSLKEK 589
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+ + G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N +L+K+L
Sbjct: 590 VAQRGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLSGEFQIVNPWLLKDLCD 649
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
+GLW+++M + G++ IS IPDD++++Y T +EIS II+ + R +IDQSQS
Sbjct: 650 RGLWNDTMKNRIIAHGGSVQNISDIPDDIKELYKTVWEISQKVIIDLAADRGAFIDQSQS 709
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDE 714
LN+++++ + +L + A RGLKT YYLR+ + A + +D L+E
Sbjct: 710 LNVHLASPTHAQLTSMHFYAHRRGLKTGMYYLRTRPQSAA----IQFTVDKQALEE 761
>gi|443242948|ref|YP_007376173.1| ribonucleoside-diphosphate reductase [Nonlabens dokdonensis DSW-6]
gi|442800347|gb|AGC76152.1| ribonucleoside-diphosphate reductase [Nonlabens dokdonensis DSW-6]
Length = 868
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/642 (41%), Positives = 394/642 (61%), Gaps = 20/642 (3%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N L++A++ RD ++Y G K L Y L I G E PQ MR+++G+ ++
Sbjct: 121 KVIQDNADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMRVSVGIHID 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ + AI+ Y L+S F +TPTLFN+GT + Q+SSC+L T+ DD + GI++++K+
Sbjct: 181 DLD---AAIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G +R+ GS I GTNG S G++P LKV ND A V+QGG KRKG+
Sbjct: 238 AKISQSAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI +F++L+KN G + R D+ A+W+ DLFMKRV TWTL P++ PD
Sbjct: 298 IYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVETNDTWTLMCPHECPD 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L+N G EFE Y YE + K G+ K I A LW KIL ETG P++ +KDA N
Sbjct: 358 LYNVHGDEFEALYTKYEQEGK-GR----KTIPARELWDKILESQIETGTPYMLYKDAANN 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G I SSNLCTEI T+ +E+ VCNL SI L + +K+G D L K +
Sbjct: 413 KSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASIALPMFVKDGAFDHKALYKVTKRVT 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID NYY VK+A+ SN+RHRPVGLGI G D ++++P++ EA + E
Sbjct: 473 RNLNKVIDRNYYPVKEAENSNMRHRPVGLGIQGLADAFIMLRLPFTCDEAKQLNSDIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ + A AS E+A+E+G YS++ GS QG + + + + ++ NW
Sbjct: 533 LYFAACEASMEMAQEEGAYSTFAGSPMSQGQFQYNMWNINDDQLSGRW---------NWA 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+
Sbjct: 584 DLRTKVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIVVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L GLWD+S+ + +G++ I IP+D++++Y T +E+ II+ R +I
Sbjct: 644 KDLVDLGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSRERGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
DQSQSLN+++ N + KL + AW GLKT YYLR+ +A
Sbjct: 704 DQSQSLNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAA 745
>gi|340715220|ref|XP_003396116.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Bombus terrestris]
Length = 821
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 276/698 (39%), Positives = 415/698 (59%), Gaps = 27/698 (3%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y+ + AR+ + + KE + I KE+++ + I+ K N + + N
Sbjct: 76 KHPDYAILAARIAISNLHKETKKSFSEVIHSLYNVKEHYTNEVRPVINEKYYN--IIQNN 133
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
+ L++A++ +RD +NY G K L Y L I+G +E PQ MR+A+ + + ++
Sbjct: 134 ANKLNSAIIYDRDFSYNYFGFKTLERSYLLKIQGKVVERPQHMLMRVAVAIHGEDIDK-- 191
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKY 181
AI+ YN LS F ++P+LF + T + Q+SSC+L T+ DD + GI++++K AL+SK
Sbjct: 192 -AIETYNFLSERYFTHASPSLFFACTRQQQMSSCFLLTMSDDSIDGIYDTLKRCALISKS 250
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETW 240
AGG+G + +R+ G+PI GT G S G+IP L+V N+ A V+QGG KR GA YLE W
Sbjct: 251 AGGIGLNVHCIRARGTPIAGTLGVSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYLEPW 310
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H DI EF++L+KN G + R ++ A+W+PDLFMKRV+ W+L P++ P L + +G
Sbjct: 311 HADIFEFLDLKKNIGKEENRARELFYALWIPDLFMKRVLDNGVWSLMCPHESPGLPDVWG 370
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE Y YE + + + +I A LW IL ETG P++ +KD CN +S Q+
Sbjct: 371 DEFEALYTRYETEKRYKR-----QIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQN 425
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSI--NLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
+G I SSNLCTEI +S +EI VCNL SI N+ ++ N D KL+K +I LD
Sbjct: 426 LGTIKSSNLCTEIVQYSSPDEIAVCNLASIAVNMFVNSSNQTFDFEKLRKVTKIVTCNLD 485
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+ID+NYY V +AK SN +HRP+G+GI G D +M+ P+ S+EA K Q E + Y
Sbjct: 486 KIIDVNYYPVPEAKTSNFKHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYG 545
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS ELA EKG Y +Y+GS +GIL D V ++ NW L+
Sbjct: 546 ALEASCELAAEKGTYETYEGSPVSKGILQYD------------MWNVTPTDLWNWTILKE 593
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+++L
Sbjct: 594 KIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYARRVLSGEFQVVNPHLLRDLT 653
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++ LWDE+M + +G++ I RIP+DL+ +Y T +EI I++ + R +IDQSQ
Sbjct: 654 ERDLWDENMKNEIIANNGSVQNIERIPNDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQ 713
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
S+N++++ + +KL + W GLKT YYLR+ A
Sbjct: 714 SMNVHMAKPTAEKLTSMHFYGWKMGLKTGMYYLRTKPA 751
>gi|410909836|ref|XP_003968396.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Takifugu rubripes]
Length = 794
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/753 (38%), Positives = 440/753 (58%), Gaps = 37/753 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF ++ + Y +K + + + L+ L
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVMEDL---YNYINPLNKRHSPMVSKETLDIVLQ 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L I G E PQ MR+++G+ + +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHQTDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +RS GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRSTGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DI +F+EL+KNTG + +R D+ +W+PDLFMKRV W+L P + P L+
Sbjct: 302 EPWHSDIFDFLELKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMCPDECPGLNE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE + ++ ++ + A +W I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFEKLYTKYEKEGRVKRV-----VKAQQVWHAIIESQTETGTPYMLYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRM 416
QQ++G I SSNLCTEI TS +E+ VCNL S+ L +++ + D KL ++ ++
Sbjct: 417 QQNLGTIKSSNLCTEIVEYTSSDEVAVCNLASVALNMYVTAERTFDFQKLAAVTKVVVKN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEAEKSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNTQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA E G Y +Y+GS +GIL D + EK ++ L+WK L
Sbjct: 537 YAALEASCELAAELGPYETYEGSPVSKGILQYD---MWEK---------TPTDLLDWKLL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIE N++ + LSGEF +N +L+K+
Sbjct: 585 KEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M L +G++ I+ IP+D++++Y T +EIS II+ + R +IDQ
Sbjct: 645 LTERGLWNEDMKNKLIAHNGSIQNINGIPNDVKQLYKTVWEISQKTIIKMAADRGAFIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLNI+I+ + KL + W +GLKT YYLR+ A A F + + + +
Sbjct: 705 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA--ANPIQFTLNKEKLKETQD 762
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+K +E+K + + + +EC C
Sbjct: 763 PVKASE---EEVKERNMAAMVCSLQNRDECLMC 792
>gi|17555242|ref|NP_499039.1| Protein RNR-1 [Caenorhabditis elegans]
gi|417657|sp|Q03604.1|RIR1_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleotide reductase large subunit
gi|3880121|emb|CAA79574.1| Protein RNR-1 [Caenorhabditis elegans]
Length = 788
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 270/642 (42%), Positives = 395/642 (61%), Gaps = 24/642 (3%)
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
+ E N L++A++ +RD + Y G K L Y L I +E PQ MR+++G+ ++
Sbjct: 129 IIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGDD 188
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ A
Sbjct: 189 IT---SAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCA 245
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
L+SK AGG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA
Sbjct: 246 LISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAI 305
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI EF+ LRKNTG + R D+ +A+W+PDLFMKRV K W+L P + P L
Sbjct: 306 YLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGL 365
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +
Sbjct: 366 DDCWGEEFEALYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRK 420
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAM 414
S QQ++G I SNLCTEI ++ +EI VCNL SI L ++ K D +KL + ++
Sbjct: 421 SNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVIT 480
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ +ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++S EA + E
Sbjct: 481 RNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFET 540
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELAE G YS+Y+GS +G L D V ++ +W
Sbjct: 541 IYYAALEASCELAELNGPYSTYEGSPVSKGQLQFD------------MWGVTPTDQCDWA 588
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +I K G+RNS +A PTA+ + I+G + SIEP N++ + LSG+F +N +++
Sbjct: 589 TLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHML 648
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L ++GLW + M L +G++ I IP D++++Y T +EIS IIE + R +I
Sbjct: 649 KDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYI 708
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
DQSQSLNI+++ S + + W +GLKT YYLR+ A
Sbjct: 709 DQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPA 750
>gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate reductase large subunit [Arabidopsis
thaliana]
Length = 816
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 291/775 (37%), Positives = 430/775 (55%), Gaps = 63/775 (8%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + ++ G+ + L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIKDM--------FYHVNDRSGLKSPLIADDVFEI 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + L + ++ +RD +++Y G K L Y L ++G +E PQ MR+A+G+ ++
Sbjct: 124 IMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ I+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI+ ++KE A+
Sbjct: 184 DS---VIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYGTLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+ EF+ELRKN G + R D+ A+W+PDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE Y YE + K K+ + A LW +IL+ ETG P++ FKD+CN +S
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKV-----VQAQQLWYEILTSQVETGTPYMLFKDSCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL--------------------TLHM 396
QQ++G I SSNLCTEI TS E VCNL SI L +L
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +ID+NYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I Y+A ASTELA G Y +Y GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
+R +W LR+ I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 DR------------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L GLW ++ L +G++ ++ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ + R +IDQSQSLNI++ + KL + W +GLKT YYLRS +A
Sbjct: 704 EIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDE-ISIKGYNKNLQEIKNNKK-CLINSEINDVNECESC 748
A K +D+ L E S+ +K ++E N K + + + EC +C
Sbjct: 764 ADAIK----FTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814
>gi|397531933|gb|AFO54476.1| ribonucleotide reductase large subunit R1i [Carassius carassius]
Length = 793
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 291/753 (38%), Positives = 436/753 (57%), Gaps = 38/753 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + ++ + Y + + + + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSEAMEDL---YNYVNPLNDRHSPMVSKETLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L I G E PQ MR+++G+ +
Sbjct: 127 --NKDRLNSAIIFDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDI- 183
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+
Sbjct: 184 --AAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIDGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DI +F+EL+KNTG + +R D+ A+W+PDLFMKRV W L P D P L
Sbjct: 302 EPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWCLMCPNDCPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE Y YE + K ++ + A LW I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFENLYTKYEKEGKAKRV-----VKAQQLWHAIIESQTETGTPYMLYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL ++ ++
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTPERTFDFQKLASVTKVIVKN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V++A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVQEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQLLNTQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A +S ELA E G Y +Y GS +GIL D + +K ++ +W+ L
Sbjct: 537 YAALESSCELAAEFGPYETYAGSPVSKGILQYD---MWDK---------TPTDLWDWEAL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+
Sbjct: 585 KEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M L +G++ I IPDDL+++Y T +EIS I++ + R +IDQ
Sbjct: 645 LTERGLWNEEMKNQLIAQNGSIQGIPTIPDDLKELYKTVWEISQKTILKMAADRGAFIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLNI+I+ + KL + W +GLKT YYLR+ A + + ++ L E
Sbjct: 705 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA----ANPIQFTLNKEKLKET 760
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
N+ +EIK + + + +EC C
Sbjct: 761 QKSASNE--EEIKELNMAAMVCSLENRDECLMC 791
>gi|94489757|gb|ABF28844.1| ribonucleotide reductase large subunit [Variola virus]
Length = 771
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE+KG Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKKGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia]
gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia]
Length = 812
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 295/757 (38%), Positives = 440/757 (58%), Gaps = 42/757 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF--- 61
P Y+ + AR+ + + KE K + +++ ++ +NK + K+ P ++EF
Sbjct: 83 PDYAILAARIAVSNLHKET-KKAFSDV-----FEDLYNH-VNKETNQKV--PLVSEFHYN 133
Query: 62 ----NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
N + L+++++ +RD +NY G K L Y L G E PQ MR+A+G+ +
Sbjct: 134 VVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGED 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTV-PDDLYGIFESIKENA 176
+ A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GIF+S+++ A
Sbjct: 194 ID---AAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA 250
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG KR GA
Sbjct: 251 MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAI 310
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L P+ P L
Sbjct: 311 YLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGL 370
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H +G EFE+ Y YE + + + + A LW I+ ETG+P++ FKDACN +
Sbjct: 371 HEVWGDEFEKLYEKYEQEGRANRT-----VKAQSLWFAIIEAQVETGNPYMLFKDACNRK 425
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAM 414
S QQ+VG I SNLCTEI +S +EI VCNL SI L + + K D KLK+ +I
Sbjct: 426 SNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVT 485
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +IDINYY + +A+ SNLRHRPVG+GI GF D L +M+ PY S+EA Q E
Sbjct: 486 KNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFET 545
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELA+ +G Y +Y+GS +GIL D + +K + N+ +W+
Sbjct: 546 IYYGALEASCELAQTEGAYETYEGSPVSKGILQYD---MWDK------VPTNL---WDWQ 593
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KL+ IKK G+RNS VA PTA+ + I+G + S EP N++ + LSGEF +N +L+
Sbjct: 594 KLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLL 653
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L + LWD+ M + G++ I IP +R +Y T +EIS I+ + R +I
Sbjct: 654 RDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEISVKSTIKMAADRGAFI 713
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK--SNFEMGIDSVN 711
DQSQS NI+++ + KL + +W GLKT YYLR+ A A + N + G S+N
Sbjct: 714 DQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMN 773
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ +G + +E + K + + + + C SC
Sbjct: 774 GQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810
>gi|260061081|ref|YP_003194161.1| ribonucleoside-diphosphate reductase large chain [Robiginitalea
biformata HTCC2501]
gi|88785213|gb|EAR16382.1| probable ribonucleoside-diphosphate reductase large chain
[Robiginitalea biformata HTCC2501]
Length = 812
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/633 (41%), Positives = 394/633 (62%), Gaps = 20/633 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L + ++ RD ++Y G K L Y L + G +E PQ MR+++G+ L++ + +
Sbjct: 117 LDSMIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHLDDLDAVR--- 173
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ Y L+S F +TPTLFNSGT + Q+SSC+L + DD + GI+ ++K+ A +S+ AGG
Sbjct: 174 ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYNTLKQTAKISQSAGG 233
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G +R+ GS I GTNG S G++P L+V ND A V+QGG KRKG+ YLE WH D
Sbjct: 234 IGLSIHNIRATGSYIAGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPWHAD 293
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F+EL+KN G + R D+ A+W+ DLFMKRV + WTL P + P L+ +EF
Sbjct: 294 IFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMCPNECPGLYTTHSEEF 353
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
EE Y+ YE + K G+ K I A LW KIL ETG P++ +KDA N +S Q+++G
Sbjct: 354 EELYLKYEKEGK-GR----KTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLGT 408
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SSNLCTEI T+++E+ VCNL SI L + +KNG+ D +L + + + L+ VID
Sbjct: 409 IRSSNLCTEILEYTAEDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTKNLNRVIDR 468
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY +K+A+ SN+RHRP+GLG+ G D ++++P++S EA K + E + Y A AS
Sbjct: 469 NYYPIKEAENSNMRHRPIGLGVQGLADTFILLRLPFTSDEAKKLNREIFETLYYAAATAS 528
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
E+A+E+G YSSY+GS QG + + +KE ++ +W+KLR IKK
Sbjct: 529 MEMAKEEGPYSSYEGSPISQGQFQHNLWGIEDKELSGRW---------DWEKLRKSIKKN 579
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N++L+++L GLW
Sbjct: 580 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSLGLW 639
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E+M L +G++ I IPD+++++Y T +E+S II+ R +IDQSQSLN++
Sbjct: 640 NENMKQELMRANGSIQHIDAIPDNIKELYQTVWELSMKDIIDMSRQRGYFIDQSQSLNLF 699
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
+ N + KL + AW GLKT YYLR+ +A
Sbjct: 700 MENANYAKLTSMHFYAWKSGLKTGMYYLRTKAA 732
>gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans]
gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans]
Length = 812
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 295/757 (38%), Positives = 440/757 (58%), Gaps = 42/757 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF--- 61
P Y+ + AR+ + + KE K + +++ ++ +NK + K+ P ++EF
Sbjct: 83 PDYAILAARIAVSNLHKET-KKAFSDV-----FEDLYNH-VNKETNQKV--PLVSEFHYN 133
Query: 62 ----NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
N + L+++++ +RD +NY G K L Y L G E PQ MR+A+G+ +
Sbjct: 134 VVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGED 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTV-PDDLYGIFESIKENA 176
+ A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GIF+S+++ A
Sbjct: 194 ID---AAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA 250
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG KR GA
Sbjct: 251 MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAI 310
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L P+ P L
Sbjct: 311 YLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGL 370
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H +G EFE+ Y YE + + + + A LW I+ ETG+P++ FKDACN +
Sbjct: 371 HEVWGDEFEKLYEKYEQEGRANRT-----VKAQSLWFAIIEAQVETGNPYMLFKDACNRK 425
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAM 414
S QQ+VG I SNLCTEI +S +EI VCNL SI L + + K D KLK+ +I
Sbjct: 426 SNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVT 485
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +IDINYY + +A+ SNLRHRPVG+GI GF D L +M+ PY S+EA Q E
Sbjct: 486 KNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFET 545
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELA+ +G Y +Y+GS +GIL D + +K + N+ +W+
Sbjct: 546 IYYGALEASCELAQTEGPYETYEGSPVSKGILQYD---MWDK------VPTNL---WDWQ 593
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KL+ IKK G+RNS VA PTA+ + I+G + S EP N++ + LSGEF +N +L+
Sbjct: 594 KLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLL 653
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L + LWD+ M + G++ I IP +R +Y T +EIS I+ + R +I
Sbjct: 654 RDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEISVKSTIKMAADRGAFI 713
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK--SNFEMGIDSVN 711
DQSQS NI+++ + KL + +W GLKT YYLR+ A A + N + G S+N
Sbjct: 714 DQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMN 773
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ +G + +E + K + + + + C SC
Sbjct: 774 GQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810
>gi|357125146|ref|XP_003564256.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Brachypodium distachyon]
Length = 814
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/773 (37%), Positives = 428/773 (55%), Gaps = 61/773 (7%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK D+ + Y E G+ L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKSTKKSFSETIK--DMYLHYNE------RSGLMAPLIADDIYEV 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + L + ++ +RD ++Y G K L Y L + GI +E PQ MR+++G+ ++
Sbjct: 124 IMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGIVVERPQHMLMRVSVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI++++KE A+
Sbjct: 184 D---SAIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI EF++LRKN G + R D+ A+WVPDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEENRARDLFFALWVPDLFMQRVQNNEEWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G++FE Y YE + K K+ I A LW IL ETG P++ +KD CN +S
Sbjct: 361 DCWGEKFENLYKKYEREGKAKKV-----IPAQTLWFDILKAQIETGTPYMLYKDTCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK------------------- 397
QQ++G I SSNLCTEI TS E VCNL SI L ++
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPEETAVCNLASIALPRFVRDKGVPIESHPSKLVGSNGS 475
Query: 398 -NGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
N D KL + L+ +ID+NYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 QNRYFDFDKLGEVTSTVTYNLNKIIDMNYYPVETAKRSNMRHRPIGIGVQGLADTFMLLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I Y+A AS ELA ++G Y +Y+GS +G++ D
Sbjct: 536 MPFDSPEAQQLNRDIFETIYYHALKASAELAAKEGPYETYEGSPVSKGVIQPD------- 588
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
V S NW LR I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 589 -----MWNVTPSSRWNWPTLRETISKVGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L + G+W ++ + Y DG++ +++ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTEMGIWTPALKNKIIYEDGSVQKMAEIPDDLKAIYKTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ R +IDQSQSLN+++ + KL + AW +GLKT YYLR+ +A
Sbjct: 704 EIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFAKLTSLHFHAWSKGLKTGMYYLRTRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
A K + G VN D + +++ K + +N+ EC +C
Sbjct: 764 ADAIKFTVDTGFLKVNGDTDTKPAEEDDVEA----KMAQVACSLNNREECLAC 812
>gi|338210538|ref|YP_004654587.1| ribonucleoside-diphosphate reductase subunit alpha [Runella
slithyformis DSM 19594]
gi|336304353|gb|AEI47455.1| ribonucleoside-diphosphate reductase, alpha subunit [Runella
slithyformis DSM 19594]
Length = 815
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/660 (41%), Positives = 402/660 (60%), Gaps = 37/660 (5%)
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
+LL + ++ +RD ++Y G K L Y L + G E PQ MR+A+G+ L++ +
Sbjct: 129 ALLDSTIIYDRDYGYDYFGYKTLEKSYLLKVNGKIAERPQHMLMRVAVGIHLDDID---S 185
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
I+ YNLLS F +TPTLFN+GT + Q+SSC+L T+ DD + GI++++K+ AL+S+ A
Sbjct: 186 VIETYNLLSERWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDGIYDTLKQCALISQSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G +R+ GS IKGTNG S G++P L+V ND A V+QGG KRKG+ YLE WH
Sbjct: 246 GGIGLSIHNIRATGSYIKGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
DI EF++L++N G + R D+ A+W+PDLFMKRV TW+L P++ P L + +G
Sbjct: 306 ADIFEFLDLKRNHGKEELRARDLFYAMWIPDLFMKRVEANDTWSLLCPHECPGLADSYGD 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ LYE + GK++ K I A LW I+ ETG P++ +KD N +S Q+++
Sbjct: 366 EFEQ---LYEKYEREGKVR--KTIKAQDLWFAIMESQIETGTPYMLYKDHANRKSNQKNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLT----------LHMKNGKLDPIKLKKTIR 411
G I SSNLCTEI TS +E+ VCNL SI+L LH +GKL I +
Sbjct: 421 GTIKSSNLCTEIMEYTSPDEVAVCNLASISLPKFVEQGTDGFLHFNHGKLFEI-----TK 475
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
+ + L+ +ID+NYY V +A+ SN RHRP+G+GI G D +M++P+ S+EA + +
Sbjct: 476 VVTKNLNKIIDLNYYPVPEAERSNKRHRPIGIGIQGLADAFLMMRMPFESEEARRLNEDI 535
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I A AS ELA+ +G Y ++ GS QGI D + K S
Sbjct: 536 HETIYCGAMTASMELAKTQGPYETWKGSPISQGIFQFDMWNVTPK-----------SGRW 584
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
NW++LR + KFG+RNS +A PTA+ S I+G + EP NL+++ LSGEF +N+
Sbjct: 585 NWEQLRKDVVKFGVRNSLLLAPMPTASTSQILGNNECFEPFTSNLYVRRVLSGEFIVVNK 644
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
YL+K+L K+GLW++SM L +G++ +I +P L+++Y TA+EI I++ + R
Sbjct: 645 YLLKDLVKEGLWNDSMKNKLMAHNGSVQKIDEVPSHLKELYKTAWEIKQKTIVDMAADRG 704
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSV 710
+I QSQSLNI++ N + KL + AW +GLKT YYLR+ +A A K E +++
Sbjct: 705 AYICQSQSLNIFMDNANYGKLTSMHFYAWKKGLKTGMYYLRTQAAVDAVKITVEKNSEAI 764
>gi|395521330|ref|XP_003764771.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
[Sarcophilus harrisii]
Length = 911
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 280/700 (40%), Positives = 420/700 (60%), Gaps = 32/700 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF ++ + Y F+ + + L+ LA
Sbjct: 190 KHPDYAILAARIAVSNLHKETKKVFSDVMEDL---YNYINPFNGRHSPMVAKSTLDIVLA 246
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 247 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID 304
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 305 ---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 361
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 362 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 421
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 422 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMCPNECPGLDD 481
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD+CN +S
Sbjct: 482 VWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 536
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L + + D KL + ++ +R
Sbjct: 537 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTLEHTFDFQKLAEVTKVIVRN 596
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +I+INYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 597 LNKIININYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIY 656
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS +LA+E G Y +Y+GS +GIL D V ++ +W L
Sbjct: 657 YGALEASCDLAKEYGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWNVL 704
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+
Sbjct: 705 KEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKD 764
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M + +G++ I IP+DL+++Y T +EIS +++ + R +IDQ
Sbjct: 765 LTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAADRGAFIDQ 824
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 825 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 864
>gi|109724507|gb|ABG43631.1| ribonucleotide reductase large subunit [Variola virus]
Length = 771
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS---AI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHFD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDEEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|350414638|ref|XP_003490375.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Bombus impatiens]
Length = 805
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/698 (39%), Positives = 412/698 (59%), Gaps = 27/698 (3%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y+ + AR+ + + KE + I KE+++ + I K N + + N
Sbjct: 76 KHPDYAILAARIAISNLHKETKKSFSEVIHNLYNVKEHYTNEVRPVISEKYYN--IIQNN 133
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
+ L++A++ +RD +NY G K L Y L I+G +E PQ MR+A+ + + ++
Sbjct: 134 ANKLNSAIIYDRDFSYNYFGFKTLERSYLLKIQGKVVERPQHMLMRVAVAIHGEDIDK-- 191
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKY 181
AI+ YN LS F ++P+LF + T + Q+SSC+L T+ DD + GI++++K AL+SK
Sbjct: 192 -AIETYNFLSERYFTHASPSLFFACTRQQQMSSCFLLTMSDDSIDGIYDTLKRCALISKS 250
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETW 240
AGG+G + +R+ G+PI GT G S G+IP L+V N+ A V+QGG KR GA YLE W
Sbjct: 251 AGGIGLNVHCIRARGTPIAGTLGVSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYLEPW 310
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H DI EF++L+KN G + R ++ A+W+PDLFMKRV W+L P++ P L + +G
Sbjct: 311 HADIFEFLDLKKNIGKEENRARELFYALWIPDLFMKRVFDNGVWSLMCPHESPGLPDVWG 370
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
EFE Y YEN+ + + +I A LW IL ETG P++ +KD CN +S Q+
Sbjct: 371 DEFEALYTRYENEKRYKR-----QIQARDLWTAILVSQVETGTPYMLYKDHCNRKSNHQN 425
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSI--NLTLHMKNGKLDPIKLKKTIRIAMRMLD 418
+G I SSNLCTEI +S +EI VCNL SI N+ ++ N D KL+K +I LD
Sbjct: 426 LGTIKSSNLCTEIVQYSSPDEIAVCNLASIAVNMFVNSSNQTFDFEKLRKVTKIVTCNLD 485
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+ID+NYY V +AK SN +HRP+G+GI G D +M+ P+ S+EA K Q E + Y
Sbjct: 486 KIIDVNYYPVHEAKTSNFKHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYG 545
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS ELA EKG Y +Y+GS +GIL D V + NW L+
Sbjct: 546 ALEASCELAAEKGTYETYEGSPVSKGILQYD------------MWNVTPTNLWNWTILKE 593
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+++L
Sbjct: 594 KIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYARRVLSGEFQVVNPHLLRDLT 653
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++ LWDE M + +G++ I RIP+DL+ +Y T +EI I++ + R +IDQSQ
Sbjct: 654 ERDLWDEDMKNEIIANNGSVQNIERIPNDLKMLYKTVWEIPQKVILKMAADRGAFIDQSQ 713
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
S+N++++ + +KL + W GLKT YYLR+ A
Sbjct: 714 SMNVHMAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPA 751
>gi|427794775|gb|JAA62839.1| Putative ribonucleotide reductase alpha subunit, partial
[Rhipicephalus pulchellus]
Length = 802
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 279/742 (37%), Positives = 433/742 (58%), Gaps = 41/742 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYF-SKFINKGIDNKLLNPKL 58
K P Y+ + AR+ + + KE VF + ++ + + + S I+ + +++
Sbjct: 94 KHPDYAILAARIAVSNLHKETKKVFSEVVEDLYNMVNERTRLRSPMISDSVYKIVMD--- 150
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + ++A++ +RD +NY G K L Y L I G E PQ MR+A+G+
Sbjct: 151 ---NAEVFNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVAIGI---HG 204
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ A+ YNL+S F ++PTLFNSGT R QLSSC+L + +D + GI++++K+ AL
Sbjct: 205 TDVEAALNTYNLMSEKWFTHASPTLFNSGTPRPQLSSCFLLQMKEDSIEGIYDTLKQCAL 264
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G + +R+ G+ I GTNG S G++P L+V N+ A V+QGG KR GA Y
Sbjct: 265 ISKSAGGIGVNVHCIRASGTYIAGTNGTSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMY 324
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI EF+EL+KNTG + R D+ A+W+PDLFMKRV + W+L P++ P LH
Sbjct: 325 LEPWHADIFEFLELKKNTGKEETRARDLFYALWIPDLFMKRVEEDGVWSLMCPHECPGLH 384
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+EFE+ Y+ YE + + ++ A LW IL ETG P++ +KDACN +S
Sbjct: 385 EVHSEEFEKLYVQYETDKRYRR-----QVRAQQLWSAILESQIETGTPYMLYKDACNRKS 439
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
Q+++G I SNLCTE+ TS +E+ VCNL SI L +K+G D KL++ ++ R
Sbjct: 440 NQKNLGTIKCSNLCTEVVEYTSPDEVAVCNLASIALNRFVKDGSFDFQKLREVSQVITRN 499
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +ID+N+Y + +A+ SN RHRP+G+G+ G DC ++++P+ S++A+ Q E I
Sbjct: 500 LNRIIDVNFYPIPEAERSNKRHRPIGIGVQGLADCFILLRLPFDSEQAMLLNRQIFETIY 559
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA++ G Y +Y GS +GIL D V ++ +W L
Sbjct: 560 YGALEASCELAQKDGPYETYKGSPVSEGILQYD------------MWGVTPTDLWDWAAL 607
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIE N++ + LSGEF +N++L+K+
Sbjct: 608 KEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQVVNQHLLKD 667
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L +GLW+ES+ +L +G++ + IP+DL+ +Y T +EI ++ + R +IDQ
Sbjct: 668 LTDRGLWNESLKNDLIANNGSVQNLD-IPEDLKALYRTVWEIPQKNVLRMAADRGAYIDQ 726
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLN++I+ + KL + W GLKT YYLR+ A A + +D L +
Sbjct: 727 SQSLNVHIAQPNYAKLTSMHFYGWKLGLKTGMYYLRTKPAANA----IQFTVDKTALKKK 782
Query: 716 SIKGYNKNLQEIKNNKKCLINS 737
+ G +L KN +CL+ S
Sbjct: 783 QLDGIACSL---KNKDECLMCS 801
>gi|72084113|ref|XP_780425.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
isoform 1 [Strongylocentrotus purpuratus]
Length = 797
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 292/761 (38%), Positives = 427/761 (56%), Gaps = 53/761 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGID-----NKLLNPK 57
K P Y+ + AR+ + + KE K+ FS + + N L +P
Sbjct: 73 KHPDYAVLAARIAVSNLHKET--------------KKLFSAVMKDLFEYTNPRNGLHSPL 118
Query: 58 LAEF-------NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
++E N L++A+L +RD ++NY G K L Y L I G E PQ MR++
Sbjct: 119 ISEETMMIINDNADRLNSAVLYDRDFEYNYFGFKTLERSYLLKINGKVAERPQHMLMRVS 178
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIF 169
+G+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L T+ DD + GI+
Sbjct: 179 VGIHGKDID---AAIQTYNLLSDRWFTHASPTLFNAGTNRPQLSSCFLLTMKDDSIDGIY 235
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-K 228
E++K AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG K
Sbjct: 236 ETLKNCALISKTAGGIGLNIHNIRASGSYIAGTNGNSNGLLPMLRVYNNTARYVDQGGNK 295
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
R GA YLE WH DI +F++ +KN G + +R D+ +W+PDLFMKRV WTL
Sbjct: 296 RPGAFAIYLEPWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDWTLMC 355
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P++ P LH +G+EFE LYE K G+ + K I A LW I+ ETG P++ +
Sbjct: 356 PHESPGLHEVWGEEFE---TLYEGYEKAGRGR--KTIKAQALWYAIIESQTETGTPYMVY 410
Query: 349 KDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKK 408
KD CN +S QQ++G I SNLCTEI +S +E+ VCNL SI L +++ D KL++
Sbjct: 411 KDHCNKKSNQQNLGTIKCSNLCTEIVEYSSADEVAVCNLASIALPRFVQDRTFDFKKLEE 470
Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
+ L+ +IDINYY V +AK SN RHRP+G+G+ G D +M+ P+ S EA K
Sbjct: 471 VTMVITENLNKIIDINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRFPFESVEAKKLN 530
Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528
Q E I Y A AS ++A + G Y +Y GS +GIL QD V +
Sbjct: 531 IQIFETIYYAALKASCKIAAKLGPYETYKGSPVSKGILQQD------------MWGVTPT 578
Query: 529 ESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTE 588
+ +W L+ I K G+RNS +A PTA+ + I+G + +IEP N++ + LSGEF
Sbjct: 579 DLHDWASLKADIAKHGVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRRVLSGEFQV 638
Query: 589 INRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648
+N +L+++L GLW + M NL +G++ I IPDD++ +Y T +EIS II+
Sbjct: 639 VNHHLLRDLTDMGLWSDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQKTIIQMAV 698
Query: 649 VRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGI 707
R +IDQSQSLNI+I+ + KL + AW GLKT YYLR+ A + +
Sbjct: 699 DRGAYIDQSQSLNIHIAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPA----ADPIKFTL 754
Query: 708 DSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
D ++L E S + ++ + + + + + + C SC
Sbjct: 755 DKLSLKEKSGAKLTEAEEKERAKNEAAMMCSLENKDACVSC 795
>gi|196012349|ref|XP_002116037.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
gi|190581360|gb|EDV21437.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
Length = 780
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 270/637 (42%), Positives = 395/637 (62%), Gaps = 24/637 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++A++ +RD +N+ G K L Y L I+ E PQ MR+++G+ + + AI
Sbjct: 131 LNSAIIYDRDYNYNFFGFKTLERSYLLKIDKKVAERPQHMLMRVSVGIHGEDIDG---AI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNL+S F ++PTLFN+GT R QLSSC+L T+ DD + GI++++K+ AL+SK AGG
Sbjct: 188 ETYNLMSERWFTHASPTLFNAGTCRPQLSSCFLLTMSDDSIEGIYDTLKQCALISKSAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G +RS GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH D
Sbjct: 248 IGLSVHCIRSSGSYIAGTNGHSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHPD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F++L+KNTG + +R D+ A+W+PDLFMKRV + W+L P D P LH+ +G+EF
Sbjct: 308 IFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENGVWSLMCPNDCPGLHDTYGEEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE+ K +++ A LW IL ETG P++ +KDACN +S Q+++G
Sbjct: 368 EKLYTEYEDAGKF-----IRQVRAQKLWFAILEAQVETGTPYMLYKDACNRKSNQKNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRMLDNVID 422
I SSNLCTEI TS +E+ VCNL SI L ++ K D KL + ++ R L+ +ID
Sbjct: 423 IKSSNLCTEIIEYTSPDEVAVCNLASIALPRFVRPDKTFDFHKLAEVTKVITRNLNKIID 482
Query: 423 INYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYA 482
IN+Y V +A+ SN RHRP+G+G+ G D +M+ P+ EA + E I Y A A
Sbjct: 483 INFYPVPEAEKSNKRHRPIGIGVQGLADAFILMRFPFDGPEARDLNIKIFESIYYGALQA 542
Query: 483 STELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542
S ELA+E G Y +Y+GS QG L D L EK+ ++ NW L+ IKK
Sbjct: 543 SCELAKEVGPYETYEGSPASQGQLQFD---LWEKQP---------TDLWNWNSLKEDIKK 590
Query: 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGL 602
+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N++L+K+L G+
Sbjct: 591 YGLRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQHLLKDLTDMGV 650
Query: 603 WDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNI 662
W++ M L +G++ +I+ IPDD++ +Y T +EIS +I+ + R +IDQSQS N+
Sbjct: 651 WNDMMKNELIANNGSIQKINNIPDDIKALYKTVWEISQRTLIDMAADRGAYIDQSQSFNV 710
Query: 663 YISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
+I+ + KL + AW +GLKT YYLR+ A A
Sbjct: 711 HIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAASA 747
>gi|296479831|tpg|DAA21946.1| TPA: ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
Length = 791
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 421/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLFNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ LYE K G+++ K I A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEK---LYERYEKEGRVR--KVIKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN HRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWNLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|223038384|ref|ZP_03608678.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
rectus RM3267]
gi|222880241|gb|EEF15328.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
rectus RM3267]
Length = 791
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 295/757 (38%), Positives = 416/757 (54%), Gaps = 107/757 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNL 63
P ++ V ARL +Y + +V G + ++ KG + P L E ++L
Sbjct: 71 PNWTFVAARLFLYDLYHKVTG---------FSGYNHLRDYLQKGEKAGRIIPGLKEKYDL 121
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNREK 122
L++ + PERDLQF YLG+K LYDRY + G IE+PQ FM IAM L+ NE + +
Sbjct: 122 DDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQQMFMAIAMFLAQNELDCQG 181
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYA 182
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S KE ALLSK+
Sbjct: 182 WAKKFYDLVSKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLSKFG 241
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHM 242
GG+G DW +VR++G I G + G+IPFLKV ND+AVAV+Q G RKGAI Y+E WHM
Sbjct: 242 GGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLGTRKGAIAVYVEPWHM 301
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
D+ +F++LRKN+G++RRR H++ A+W+ DLFMKRV + + W+LF P +V DL + +G E
Sbjct: 302 DVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSLFDPAEVADLCDLYGDE 361
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE YI YEN K+ K + A LW+KIL+ FE+G P++ FKD N +P H G
Sbjct: 362 FEARYIAYENDEKIQK----NVVMAKELWKKILTSYFESGMPFLCFKDNANKTNPNDHDG 417
Query: 363 IIHSSNLCTEITLNTSKN--------EIGVCNLGSINLTLHMKNG---------KLDPIK 405
II SSNLCTEI NT N E G L + + +G LD I
Sbjct: 418 IIRSSNLCTEIFQNTQPNYYKIKITFEGGSERLFDEEEDVRVDSGIVKKAKKLSALDSIG 477
Query: 406 LKKTIRIAMRMLD------NVIDINYYAVKK----------------------------A 431
++ + L+ N+ IN + K
Sbjct: 478 GEQIFIVEKESLEGKTAVCNLASINLSKINKKEDIERVVPIAVRMLDNVIDLNFYPHKKV 537
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
K++NL R +GLG+MG L + + S E + D ME I + A YAS+ LA EKG
Sbjct: 538 KHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENISFNAIYASSNLAVEKG 597
Query: 492 RYSSYDGSLWDQGILPQDS----LKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++GS W +G++P D+ K L +RG + + + +W KLR ++K+ GMRN
Sbjct: 598 VYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDE----NACDWSKLREKVKRDGMRN 653
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG M
Sbjct: 654 GYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------------------M 691
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-- 665
I N+ + + + + Y A+E+ ++ AG++RQKWIDQ QSLNI++S
Sbjct: 692 IPNV---------VPNLSPETWQFYTPAYELDQRVLVRAGAIRQKWIDQGQSLNIFMSLD 742
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN 702
SG L E Y LAW GLK+TYYLRS S + K +N
Sbjct: 743 KASGGYLSEIYMLAWELGLKSTYYLRSESPDSEKLNN 779
>gi|380020101|ref|XP_003693934.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
reductase large subunit-like [Apis florea]
Length = 822
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/702 (39%), Positives = 418/702 (59%), Gaps = 29/702 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKY-KEYFSKFINKGIDNKLLNPKLAEF 61
K P Y+ + AR+ + + KE K ++ + + KE ++ I K N + +
Sbjct: 76 KHPDYAILAARIAISNLHKET-TKSFSEVMYNLYHVKEQYTNNQKPVISEKYYN--IIQK 132
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N + L++A++ +RD +NY G K L Y L I G +E PQ MR+A+ + + ++
Sbjct: 133 NANKLNSAIIYDRDFSYNYFGFKTLERSYLLKIHGKVVERPQHMLMRVAVAIHGEDIDK- 191
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YN LS F ++PTLF++ T + Q+SSC+L T+ +D + GI++++K AL+SK
Sbjct: 192 --AIETYNFLSERYFTHASPTLFSACTRQQQMSSCFLLTMSEDSIEGIYDTLKRCALISK 249
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ G+PI GT G S G+IP ++V N+ A V+QGG KR GA YLE
Sbjct: 250 SAGGIGLNVHCIRARGTPIAGTLGVSNGLIPMIRVYNNTARYVDQGGNKRPGAFAIYLEP 309
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EF++L+KNTG + R ++ A+W+PDLFMKRV+ WTL P++ P L + +
Sbjct: 310 WHADIFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNGIWTLMCPHESPGLADVW 369
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE Y YEN+ + + +I A LW IL ETG P++ +KD CN +S Q
Sbjct: 370 GNEFEILYTRYENEKRYKR-----QIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQ 424
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSI--NLTLHMKNGKLDPIKLKKTIRIAMRML 417
++G I SSNLCTE+ +S +E+ VCNL SI N+ ++ N D KL K +I L
Sbjct: 425 NIGTIKSSNLCTEVVQYSSPDEVAVCNLASIAVNMFVNPNNQTFDFQKLLKVTKIVTCNL 484
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
D +ID+NYY + +A+ SN RHRP+G+GI G D +M+ P+ S+EA K Q E + Y
Sbjct: 485 DKIIDVNYYPIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYY 544
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR 537
A AS ELAEEKG Y +Y+GS +GIL D ++ + +W L+
Sbjct: 545 GALEASCELAEEKGTYETYEGSPVSKGILQYDMWNVIP------------TNLWDWTILK 592
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKEL 597
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+++L
Sbjct: 593 XKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDL 652
Query: 598 KKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQS 657
++ LWDE M + +G++ I RIPDDL+ +Y T +EI I++ + R +IDQS
Sbjct: 653 TERDLWDEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQS 712
Query: 658 QSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
QSLN++++ + +KL + W GLKT YYLR+ A A
Sbjct: 713 QSLNVHMAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAANA 754
>gi|395814934|ref|XP_003780992.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
[Otolemur garnettii]
Length = 792
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/707 (39%), Positives = 418/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLFNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHQEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHADIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q + K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGHVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKT 409
+CN +S QQ++G I SNLCTE+ TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLNEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWNLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS ++ +
Sbjct: 638 NPHLLKDLTERGLWNEKMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLTMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|94484317|gb|ABF23431.1| ribonucleotide reductase large subunit [Variola virus]
gi|94489961|gb|ABF29047.1| ribonucleotide reductase large subunit [Variola virus]
Length = 771
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|94486937|gb|ABF26038.1| ribonucleotide reductase large subunit [Variola virus]
Length = 771
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|149634836|ref|XP_001505371.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
[Ornithorhynchus anatinus]
Length = 792
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/638 (41%), Positives = 392/638 (61%), Gaps = 24/638 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+A+G+ + +
Sbjct: 127 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVAVGIHEEDID-- 184
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 185 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 244 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 304 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNRDWSLMCPNECPGLDEVW 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD CN +S QQ
Sbjct: 364 GEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDTCNRKSNQQ 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TS++E+ VCNL S+ L + + D KL + ++ +R L+
Sbjct: 419 NLGTIKCSNLCTEIVEYTSRDEVAVCNLASLALNMFVTLEHTYDFKKLAEVTKVIVRNLN 478
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 479 KIIDINYYPIPEASTSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNQQIFETIYYG 538
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA++ G Y +Y GS +GIL D V ++ +WK L+
Sbjct: 539 ALDASCDLAKDHGPYETYQGSPVSKGILQYD------------MWNVTPTDLWDWKALKE 586
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L
Sbjct: 587 KIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLT 646
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW+E M + +G++ I IP+DL+++Y T +EIS +++ + R +IDQSQ
Sbjct: 647 ERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQ 706
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 707 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|94486532|gb|ABF25635.1| ribonucleotide reductase large subunit [Variola virus]
gi|94486734|gb|ABF25836.1| ribonucleotide reductase large subunit [Variola virus]
Length = 771
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|9627579|ref|NP_042102.1| hypothetical protein VARVgp058 [Variola virus]
gi|417658|sp|P32984.1|RIR1_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleotide reductase large subunit
gi|62335|emb|CAA47558.1| ribonucleotide reductase (large subunit) [Variola virus]
gi|297239|emb|CAA48999.1| K4L [Variola virus]
gi|438976|gb|AAA60806.1| homolog of vaccinia virus CDS I4L (ribonucleotide reductase, large
subunit); putative [Variola major virus]
gi|544814|gb|AAB29605.1| K4L product [variola virus VAR, India-1967, Peptide, 771 aa]
gi|94483704|gb|ABF22821.1| ribonucleotide reductase large subunit [Variola virus]
gi|94484521|gb|ABF23634.1| ribonucleotide reductase large subunit [Variola virus]
gi|94484719|gb|ABF23831.1| ribonucleotide reductase large subunit [Variola virus]
gi|94484917|gb|ABF24028.1| ribonucleotide reductase large subunit [Variola virus]
gi|94485115|gb|ABF24225.1| ribonucleotide reductase large subunit [Variola virus]
gi|94485722|gb|ABF24829.1| ribonucleotide reductase large subunit [Variola virus]
gi|94486126|gb|ABF25231.1| ribonucleotide reductase large subunit [Variola virus]
gi|94486329|gb|ABF25433.1| ribonucleotide reductase large subunit [Variola virus]
gi|94487140|gb|ABF26240.1| ribonucleotide reductase large subunit [Variola virus]
gi|94487342|gb|ABF26441.1| ribonucleotide reductase large subunit [Variola virus]
gi|94487546|gb|ABF26644.1| ribonucleotide reductase large subunit [Variola virus]
gi|94487951|gb|ABF27047.1| ribonucleotide reductase large subunit [Variola virus]
gi|94488554|gb|ABF27647.1| ribonucleotide reductase large subunit [Variola virus]
gi|94488755|gb|ABF27847.1| ribonucleotide reductase large subunit [Variola virus]
gi|94488956|gb|ABF28047.1| ribonucleotide reductase large subunit [Variola virus]
gi|94489155|gb|ABF28245.1| ribonucleotide reductase large subunit [Variola virus]
gi|94489355|gb|ABF28444.1| ribonucleotide reductase large subunit [Variola virus]
gi|94489557|gb|ABF28645.1| ribonucleotide reductase large subunit [Variola virus]
gi|94490166|gb|ABF29251.1| ribonucleotide reductase large subunit [Variola virus]
gi|109724101|gb|ABG43227.1| ribonucleotide reductase large subunit [Variola virus]
gi|109724305|gb|ABG43430.1| ribonucleotide reductase large subunit [Variola virus]
gi|109724712|gb|ABG43835.1| ribonucleotide reductase large subunit [Variola virus]
gi|109724915|gb|ABG44037.1| ribonucleotide reductase large subunit [Variola virus]
gi|109725119|gb|ABG44240.1| ribonucleotide reductase large subunit [Variola virus]
gi|109725324|gb|ABG44444.1| ribonucleotide reductase large subunit [Variola virus]
gi|109725527|gb|ABG44646.1| ribonucleotide reductase large subunit [Variola virus]
gi|109725731|gb|ABG44849.1| ribonucleotide reductase large subunit [Variola virus]
gi|109725934|gb|ABG45051.1| ribonucleotide reductase large subunit [Variola virus]
gi|109726341|gb|ABG45456.1| ribonucleotide reductase large subunit [Variola virus]
gi|109726544|gb|ABG45658.1| ribonucleotide reductase large subunit [Variola virus]
gi|745175|prf||2015436BP K4L gene
Length = 771
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|94483909|gb|ABF23025.1| ribonucleotide reductase large subunit [Variola virus]
gi|94484112|gb|ABF23227.1| ribonucleotide reductase large subunit [Variola virus]
gi|94485317|gb|ABF24426.1| ribonucleotide reductase large subunit [Variola virus]
gi|94485520|gb|ABF24628.1| ribonucleotide reductase large subunit [Variola virus]
gi|94487747|gb|ABF26844.1| ribonucleotide reductase large subunit [Variola virus]
gi|94488154|gb|ABF27249.1| ribonucleotide reductase large subunit [Variola virus]
gi|94488354|gb|ABF27448.1| ribonucleotide reductase large subunit [Variola virus]
gi|109726138|gb|ABG45254.1| ribonucleotide reductase large subunit [Variola virus]
Length = 771
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKQVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|37551518|gb|AAQ93170.1| ribonucleotide reductase large subunit [Vaccinia virus]
Length = 771
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++IK +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIKTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|260789736|ref|XP_002589901.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
gi|229275086|gb|EEN45912.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
Length = 787
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/741 (38%), Positives = 435/741 (58%), Gaps = 34/741 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y+ + AR+ + + KE ++ + + + I KL++ L N
Sbjct: 70 KHPDYATLAARIAISNLHKETKKAFTDVMEDLYNWVNPKTNQHSPMISKKLMD--LVTKN 127
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
L++A++ +RD ++ Y G+K L Y L I+G E PQ MR+A+G+ + +
Sbjct: 128 ADRLNSAIIYDRDFKYTYFGIKTLERSYLLRIDGKVAERPQHMLMRVALGIHYEDLD--- 184
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKY 181
AI+ YNL+S F ++PTLFN+GT + QLSSC+L T+ DD + GI+E++K+ AL+SK
Sbjct: 185 AAIETYNLMSEKKFTHASPTLFNAGTNKPQLSSCFLLTMKDDSIDGIYETLKQCALISKS 244
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETW 240
AGG+G + ++R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE W
Sbjct: 245 AGGIGVNIHKIRASGSFIAGTNGTSNGLLPMLRVFNNTARYVDQGGNKRPGAFAMYLEPW 304
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
H DI EF++ RKNTG + +R D+ A+W+PDLFMKRV + WTL P++ P L + +G
Sbjct: 305 HADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEENGEWTLMCPHECPGLEDCWG 364
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+EFE+ LYE K GK + + + A +W I+ ETG+P++ +KDACN +S QQ+
Sbjct: 365 EEFEK---LYEGYEKAGKGR--RTVKAQQVWYAIIEAQTETGNPYMLYKDACNSKSNQQN 419
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDN 419
+G I SNLCTEI TS +E+ VCNL SI + +++K +G D KLK+ + R L+
Sbjct: 420 LGTIKCSNLCTEIVEYTSPDEVAVCNLASIAVNMYVKPDGTYDFEKLKEVTVVITRNLNK 479
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+ID+NYY V +A+ SN +HRP+G+G+ G DC +M+ P+ S+EA Q E I Y A
Sbjct: 480 IIDVNYYPVPEAENSNKKHRPIGIGVQGLADCFILMRYPFESEEAQHLNKQIFETIYYGA 539
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS E+A+E G Y +Y+G +GI D V ++ +W L+ +
Sbjct: 540 MQASCEIAKELGPYETYEGCPVSKGIFQYD------------MWNVTPTDLWDWAALKEQ 587
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ G+RNS +A PTA+ + I+G + SIE N++ + LSGEF +N +L+ +L +
Sbjct: 588 VKQHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQVVNHHLMTDLTE 647
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLW+E M + +G++ I IP+ +R +Y T +EIS +I+ + R +IDQSQS
Sbjct: 648 LGLWNEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWEISQKTVIKMAADRGAFIDQSQS 707
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
LNI+I + K+ + W GLKT YYLR+ A+ + + +D L + +
Sbjct: 708 LNIHIGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPAS----NPIQFTVDKSKLAQSTKA 763
Query: 719 GYNKNLQ----EIKNNKKCLI 735
K L+ ++N +CL+
Sbjct: 764 EKEKQLEAMVCSLENKDECLM 784
>gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
Length = 815
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 292/773 (37%), Positives = 429/773 (55%), Gaps = 60/773 (7%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK D+ + + E G+ L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIK--DMYMHFNE------RSGLMAPLVAEDVYEI 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + L + ++ +RD ++Y G K L Y L + G +E PQ MR+++G+ +
Sbjct: 124 IMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKEDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI+E++KE A+
Sbjct: 184 ---ESAIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYETLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI EF++LRKN G + R D+ A+WVPDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+EF+ Y YE+Q K K+ + A LW IL ETG P++ +KD CN +S
Sbjct: 361 DCWGEEFDNLYKKYESQGKAKKV-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-------------------- 396
QQ++G I SSNLCTEI TS NE VCNL SI L +
Sbjct: 416 NQQNLGTIKSSNLCTEIIEFTSPNETAVCNLASIALPRFVREKGVPLESHPSKLVGSSDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +IDINYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I Y++ AS ELA ++G Y +Y+GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYEGSPVSKGILQPDMWDVVPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
R NW LR I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 NR------------WNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L + G+W ++ + Y DG++ +I+ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ R +IDQSQSLN+++ + KL + AW +GLKT YYLR+ +A
Sbjct: 704 EIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
A K + + N + +S K +E K + +N+ EC +C
Sbjct: 764 ADAIKFTVDTTLLKENGNVVS---NGKPTEEDVEAKMAQMVCSLNNREECMAC 813
>gi|325558889|gb|ADZ30266.1| ribonucleotide reductase large subunit protein [Cowpox virus]
Length = 771
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYETYTGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQIVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|113195253|ref|YP_717383.1| ribonucleotide reductase large subunit [Taterapox virus]
gi|90660529|gb|ABD97642.1| ribonucleotide reductase large subunit [Taterapox virus]
Length = 771
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|22164662|ref|NP_671575.1| EVM057 [Ectromelia virus]
gi|22123803|gb|AAM92361.1|AF523264_57 EVM057 [Ectromelia virus]
gi|383866777|gb|AFH54620.1| ribonucleotide reductase large subunit [Ectromelia virus]
Length = 771
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDI---ESAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDGEWSLMCPNECPGLDNAWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYEREKRYKNI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNVFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+
Sbjct: 543 CELAEKEGPYDTYAGSYASNGILQYDLWNVVP------------SDLWNWESLKDKIRSH 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NEE-IKNRIIADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ +A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAAS 743
>gi|305665629|ref|YP_003861916.1| putative ribonucleoside-diphosphate reductase large chain
[Maribacter sp. HTCC2170]
gi|88710385|gb|EAR02617.1| probable ribonucleoside-diphosphate reductase large chain
[Maribacter sp. HTCC2170]
Length = 825
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/637 (41%), Positives = 390/637 (61%), Gaps = 20/637 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L + ++ RD ++Y G K L Y L + G E PQ MR+++G+ L++ +
Sbjct: 126 NSVALDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIHLDDLDAV 185
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
K + Y L+S F +TPTLFNSGT + Q+SSC+L + DD + GI++++K+ A +S+
Sbjct: 186 K---ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAKISQ 242
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G VR+ GS I GTNG S G++P L+V ND A V+QGG KRKG+ Y+E
Sbjct: 243 SAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGGGKRKGSFAIYMEP 302
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EF+EL+KN G + R D+ A+W+ DLFMKRV WTL P + P L
Sbjct: 303 WHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEEWTLMCPNECPGLFTNH 362
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
+EFE+ Y+ YE++ K G+ K + A LW KIL ETG P++ +KDA N +S Q+
Sbjct: 363 SEEFEKLYLKYESENK-GR----KTVRARELWEKILESQIETGTPYMLYKDAANRKSNQK 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
++G I SSNLCTEI TS +E+ VCNL SI L + +KNG+ D +L + + + L+
Sbjct: 418 NLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTKNLNK 477
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID NYY VK+A+ SN+RHRP+GLG+ G D ++++P++S EA K + E + + A
Sbjct: 478 VIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFILLRLPFTSDEAKKLNQEIFETLYFAA 537
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS E A+E+G+YSSYDGS QG + + ++E ++ +W KLR
Sbjct: 538 VTASMEAAKEEGKYSSYDGSPISQGEFQHNLWGIKDEELSGRW---------DWTKLRKD 588
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+KK G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N++L+++L
Sbjct: 589 VKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVN 648
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+W+E+M L +G++ I IP D+R +Y T +E+S II+ R +IDQSQS
Sbjct: 649 LGMWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSRHRGYFIDQSQS 708
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
LN+++ N + KL + AW GLKT YYLR+ +A
Sbjct: 709 LNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAA 745
>gi|164519000|ref|NP_001106767.1| ribonucleoside-diphosphate reductase large subunit [Bos taurus]
gi|158455067|gb|AAI09487.2| RRM1 protein [Bos taurus]
Length = 791
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLFNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ LYE K G+++ K I A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEK---LYERYEKEGRVR--KVIKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN HRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W L+ +I K+G+RNS +A PTA+ I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWNLLKEKIAKYGVRNSLLIAPMPTASTVQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|325558243|gb|ADZ29623.1| ribonucleotide reductase large subunit protein [Cowpox virus]
Length = 771
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYETYTGSYASNGILQYDLWNIVP------------SDLWNWESLKDKIRSY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQIVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|444731474|gb|ELW71827.1| Ribonucleoside-diphosphate reductase large subunit [Tupaia
chinensis]
Length = 792
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/707 (39%), Positives = 421/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +K
Sbjct: 355 ECPGLDEVWGEEFEKLYEKYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKA 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN + QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRTNNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAYLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+++I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKDKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta]
gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta]
Length = 812
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 292/765 (38%), Positives = 437/765 (57%), Gaps = 38/765 (4%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKF-------INKGIDNKL- 53
E D + +++ A L Y + I ++ + K+ FS +NK + K+
Sbjct: 66 ELDNLAAEIAAGLTCYHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVS 125
Query: 54 ----LNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRI 109
+ + + N + L+++++ +RD +NY G K L Y L G E PQ MR+
Sbjct: 126 LVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKTNGKIAERPQHMLMRV 185
Query: 110 AMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTV-PDDLYGI 168
A+G+ + + A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GI
Sbjct: 186 AIGIHGEDID---AAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGI 242
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG- 227
F+S+++ A++SK AGG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG
Sbjct: 243 FKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGG 302
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLF 287
KR GA YLE WH D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L
Sbjct: 303 KRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLM 362
Query: 288 SPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWIT 347
P+ P L + +G EFE+ Y YE + + + + A LW I+ ETG+P++
Sbjct: 363 CPHKCPGLQDVWGDEFEKLYEKYEQEGRANRT-----VKAQSLWYAIIEAQVETGNPYML 417
Query: 348 FKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKL 406
FKDACN +S QQ+VG I SNLCTEI ++ +EI VCNL SI L + + K D KL
Sbjct: 418 FKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDFKKL 477
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
K+ +I R L+ +IDINYY + +A+ SNLRHRPVG+GI GF D L +M+ PY S+EA
Sbjct: 478 KEVTKIVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGL 537
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
Q E I Y A AS ELA+ +G Y +Y+GS +GIL D + +K + N
Sbjct: 538 LNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYD---MWDK------VPTN 588
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
+ +W+KL+ IKK G+RNS VA PTA+ + I+G + S EP N++ + LSGEF
Sbjct: 589 L---WDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEF 645
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEA 646
+N +L+++L + LWD+ M + G++ I IP +R +Y T +EIS I+
Sbjct: 646 QVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEISVKSTIKM 705
Query: 647 GSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK--SNF 703
+ R +IDQSQS NI+++ + KL + +W GLKT YYLR+ A A + N
Sbjct: 706 AADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNK 765
Query: 704 EMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ G + +N + +K +E + K + + + + C SC
Sbjct: 766 KKGAEGINGQNGTSDESSKQFEEDRERKMADMVCSLENKDACMSC 810
>gi|373108816|ref|ZP_09523097.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CCUG 10230]
gi|423129514|ref|ZP_17117189.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CCUG 12901]
gi|371646061|gb|EHO11578.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CCUG 10230]
gi|371648564|gb|EHO14052.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CCUG 12901]
Length = 797
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 272/694 (39%), Positives = 417/694 (60%), Gaps = 39/694 (5%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L + ++ +RD ++Y G K L Y L + G +E PQ MR+A+G+ L++ + I
Sbjct: 130 LDSTIIYQRDFNYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVAVGIHLDDID---SVI 186
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+ A +S+ AGG
Sbjct: 187 ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEGIYDTLKQTAKISQSAGG 246
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ YLE WH D
Sbjct: 247 IGLSIHNVRATGSYIRGTNGTSNGIVPMLRVYNDTARYVDQGGGKRKGSFAIYLEPWHAD 306
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FIELRKN G + R D+ +A+W+ DLFM+RV WTL P + P L + +G+EF
Sbjct: 307 VFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMCPNECPGLCDVYGEEF 366
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YEN+ K G+ + I A LW +L ETG P++ +KDA N +S Q+++G+
Sbjct: 367 EQLYLKYENEGK-GR----RTIKARELWEAVLEAQIETGTPYMLYKDAANAKSNQKNLGV 421
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SSNLCTEI TS +E+ VCNL SI+L + +++G+ + L + R L+ VID
Sbjct: 422 IRSSNLCTEIMEYTSPDEVAVCNLASISLPMFVEDGQFNHQFLFDVTKRITRNLNRVIDR 481
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY V++A SN+RHRPVGLG+ G D +M++P++S EA + + E I + A AS
Sbjct: 482 NYYPVEEAYNSNMRHRPVGLGVQGLADAFIMMRMPFTSPEAKQLNQEIFETIYFAALTAS 541
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
E+A+E+G YS+++GS +G + + ++E ++ +W LR +
Sbjct: 542 MEMAKEEGAYSTFEGSPISKGEFQYNMWGVKDEELSGRW---------DWASLRKEVMAS 592
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS +A PTA+ S I+G + + EP N++ + LSGEF +N++L+K+L + GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVELGLW 652
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E + + +G++ I IP D+R++Y T +E+S II+ R +IDQSQSLN++
Sbjct: 653 NEDLKQEIMRANGSIQHIDFIPADIRELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNLF 712
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA--------NYAKKSNFEMGIDSVNLDE 714
+ + KL + AW GLKT YYLR+ SA N KK+N I+ V ++
Sbjct: 713 MEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLNNEKKTN-PNAIEEV--EQ 769
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+S++ Y LQ + N+ +CE C
Sbjct: 770 VSVEDYQAMLQRAR--------MAANNDEDCEMC 795
>gi|225011000|ref|ZP_03701466.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
bacterium MS024-3C]
gi|225004907|gb|EEG42863.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
bacterium MS024-3C]
Length = 827
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/637 (41%), Positives = 389/637 (61%), Gaps = 20/637 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N LL + ++ RD ++Y G K L Y L + G +E PQ MR+++G+ + +
Sbjct: 126 NAELLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHPTDMD-- 183
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ Y L+S F +TPTLFNSGT + Q+SSC+L + DD + GI++++K+ A +S+
Sbjct: 184 -SAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAKISQ 242
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G VR+ GS I GTNG S GV+P LKV ND A V+QGG KRKG+ Y+E
Sbjct: 243 SAGGIGLSIHNVRATGSYISGTNGTSNGVVPMLKVFNDTARYVDQGGGKRKGSFAMYVEP 302
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +F++L+KN G + R D+ A+W+PDLFMKRV + WTL P + P+L N
Sbjct: 303 WHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAEWTLMCPNECPNLFNNH 362
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
+ F+E Y+ YE++ K G+ K I A LW KIL ETG P++ +KDA N +S Q+
Sbjct: 363 SEAFDELYLKYESEGK-GR----KTIKARELWEKILESQIETGTPYMLYKDAANRKSNQK 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
++G I SSNLCTEI TS +E+ VCNL SI L + +K+G D +L K + + L+
Sbjct: 418 NLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKDGAFDHKELFKVTKRVTKNLNK 477
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID NYY VK+A+ SN+RHRP+GLG+ G D ++++P++S EA K ++ E + + A
Sbjct: 478 VIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNEEIFETLYFAA 537
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS E A+ G Y SY GS QG + + ++E ++ +W KLR
Sbjct: 538 LTASMEEAKADGPYQSYKGSPISQGEFQHNLWGIKDEELSGRW---------DWAKLRKD 588
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+KK G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N++L+++L
Sbjct: 589 VKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVA 648
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWDE + L +G++ I IP D++++Y T +E+S II+ R +IDQSQS
Sbjct: 649 LGLWDEGLKQELMRANGSVQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQS 708
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
LN+++ N + KL + AW GLKT YYLR+ +A
Sbjct: 709 LNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAA 745
>gi|432890244|ref|XP_004075435.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Oryzias latipes]
Length = 794
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/700 (40%), Positives = 416/700 (59%), Gaps = 32/700 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + ++ + Y +K + I + L+ L
Sbjct: 71 KYPDYAILAARIAVSNLHKETKKVFSEVMEDL---YSYVNPLNKCHSPMISKETLDIVLE 127
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L I G E PQ MR+A+G+
Sbjct: 128 --NKDRLNSAIIFDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVAVGI---HGR 182
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+
Sbjct: 183 NIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALI 242
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +RS GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 243 SKSAGGIGVAVSCIRSTGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYL 302
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH D+ +F+EL+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 303 EPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWSLMCPNECPGLDE 362
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G EFEE Y YE + ++ ++ + A LW ++ ETG P++ +KDACN +S
Sbjct: 363 CWGVEFEELYTKYEREGRVKRV-----VKAQQLWHAVIESQTETGTPYMLYKDACNKKSN 417
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TS +E+ VCNL SI L +++ + D KL ++ ++
Sbjct: 418 QQNLGTIKCSNLCTEIVEYTSHDEVAVCNLASIALNMYVTPERTFDFKKLASVTKVIVKN 477
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 478 LNKIIDINYYPVPEAEKSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNIQIFETIY 537
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA E G Y +YDG +G+L D + EK ++ +WK L
Sbjct: 538 YAALEASCELAAELGPYETYDGCPVSRGVLQYD---MWEK---------TPTDLWDWKLL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+
Sbjct: 586 KEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKD 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW E M L +G++ I+ IP+DL+++Y T +EIS +++ + R +IDQ
Sbjct: 646 LTERGLWSEEMKNKLIGNNGSIQDIAEIPNDLKQLYKTVWEISQKTVLKMAADRGAFIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 706 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA 745
>gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba]
gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba]
Length = 812
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 294/760 (38%), Positives = 437/760 (57%), Gaps = 48/760 (6%)
Query: 5 PVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + KE VF E + +NK + K+ P ++EF
Sbjct: 83 PDYAILAARIAVSNLHKETKKVFSDVF----------EDLYEHVNKETNQKV--PLVSEF 130
Query: 62 -------NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
N + L+++++ +RD +NY G K L Y L G E PQ MR+A+G+
Sbjct: 131 HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIH 190
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTV-PDDLYGIFESIK 173
+ + A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GIF+S++
Sbjct: 191 GEDID---AAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVE 247
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
+ A++SK AGG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG KR GA
Sbjct: 248 QCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGA 307
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLE WH D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L P+
Sbjct: 308 FAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKC 367
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G EFE+ Y YE + + + + A LW I+ ETG+P++ FKDAC
Sbjct: 368 PGLQDVWGDEFEKLYEKYEQEGRANRT-----VKAQSLWFAIIEAQVETGNPYMLFKDAC 422
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIR 411
N +S QQ+VG I SNLCTEI ++ +EI VCNL SI L + + K D KLK+ +
Sbjct: 423 NRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTK 482
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
I + L+ +IDINYY + +AK SNLRHRPVG+G+ GF D L +M+ PY S+EA Q
Sbjct: 483 IVTKNLNKIIDINYYPLPEAKKSNLRHRPVGIGVQGFADALILMRFPYESEEAGLLNQQI 542
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y A AS ELA+ +G Y +Y+GS +GIL D + +K + N+
Sbjct: 543 FETIYYGALEASCELAQAEGPYETYEGSPVSKGILQYD---MWDK------VPTNL---W 590
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W+KL+ IK+ G+RNS VA PTA+ + I+G + S EP N++ + LSGEF +N
Sbjct: 591 DWQKLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNH 650
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
+L+++L + LWD+ M + G++ I IP +R +Y T +EIS I+ + R
Sbjct: 651 HLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVWEISVKSTIKMAADRG 710
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK--SNFEMGID 708
+IDQSQS NI+++ + KL + +W GLKT YYLR+ A A + N + G
Sbjct: 711 AFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAV 770
Query: 709 SVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
S+N + +G + +E + K + + + + C SC
Sbjct: 771 SINGQNGASEGSPQKFEEDRERKMADMVCSLENKDACMSC 810
>gi|94485925|gb|ABF25031.1| ribonucleotide reductase large subunit [Variola virus]
Length = 771
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARAVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NNE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|297821381|ref|XP_002878573.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
lyrata subsp. lyrata]
gi|297324412|gb|EFH54832.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
lyrata subsp. lyrata]
Length = 817
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/713 (39%), Positives = 408/713 (57%), Gaps = 50/713 (7%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N + L + ++ +RD +++Y G K L Y L ++G +E PQ MR+A+G+ ++ +
Sbjct: 127 NAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS- 185
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI+E++KE A++SK
Sbjct: 186 --AIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG--KRKGAICAYLE 238
AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG +++GA YLE
Sbjct: 244 SAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKEGAFAVYLE 303
Query: 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNK 298
WH D+ EF+ELRKN G + R D+ A+WVPDLFM+RV W+LF P + P L +
Sbjct: 304 PWHADVFEFLELRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADC 363
Query: 299 FGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ 358
+G EFE Y YE + K K+ + A LW +IL+ ETG P++ FKD+CN +S Q
Sbjct: 364 WGAEFETLYTKYEREGKAKKV-----VQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQ 418
Query: 359 QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL--------------------TLHMKN 398
Q++G I SSNLCTEI TS E VCNL SI L +L KN
Sbjct: 419 QNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPSKLAGSLGSKN 478
Query: 399 GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458
D KL + L+ +ID+NYY V+ AK SN+RHRP+G+G+ G D ++ +P
Sbjct: 479 RYFDFDKLAEVTATVTLNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMP 538
Query: 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518
+ S EA + E I Y+A AS+ELA G Y +Y GS +GIL D ++ R
Sbjct: 539 FDSPEAQQLNKDIFETIYYHALKASSELAARVGPYETYSGSPVSKGILQPDMWNVIPSNR 598
Query: 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHI 578
+W LR+ I K G+RNS VA PTA+ S I+G + EP N++
Sbjct: 599 ------------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYS 646
Query: 579 KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI 638
+ LSGEF +N++L+ +L GLW ++ L +G++ ++ IPDDL+ IY T +EI
Sbjct: 647 RRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEI 706
Query: 639 SPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANY 697
+++ R +IDQSQSLNI++ + KL + AW +GLKT YYLRS +A
Sbjct: 707 KQRTVVDMAVDRGCYIDQSQSLNIHMDKPNFAKLTSLHFYAWTKGLKTGMYYLRSRAAAD 766
Query: 698 AKKSNFEMGIDSVNLDE-ISIKGYNKNLQEIKNNKK-CLINSEINDVNECESC 748
A K +D+ L E S+ +K ++E N K + + + ++C +C
Sbjct: 767 AIK----FTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPDDCLAC 815
>gi|51342225|gb|AAU01269.1| MPXV-WRAIR059 [Monkeypox virus]
gi|58220529|gb|AAW67817.1| MPXV-SL-059 [Monkeypox virus]
gi|59858865|gb|AAX09160.1| MPXV-COP-059 [Monkeypox virus]
gi|68448741|gb|AAY96864.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
gi|68449343|gb|AAY97463.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
gi|68449543|gb|AAY97662.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
Length = 771
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS---AI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG+D RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKCI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
+LAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|110636873|ref|YP_677080.1| ribonucleoside diphosphate reductase subunit alpha [Cytophaga
hutchinsonii ATCC 33406]
gi|110279554|gb|ABG57740.1| ribonucleoside diphosphate reductase, alpha subunit [Cytophaga
hutchinsonii ATCC 33406]
Length = 794
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 290/755 (38%), Positives = 436/755 (57%), Gaps = 41/755 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + K+ F +K++ + K G + +++ ++
Sbjct: 70 KHPDYATLAARIAVSNLHKKTSKSFANTMKRLYTYVDPK--------TGENASMISNEVY 121
Query: 60 EF---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
EF N ++L +A++ +RD ++Y G K L Y L ++G +E PQ MR++ G+
Sbjct: 122 EFIRKNAAILDSAIIYDRDYGYDYFGFKTLEKSYLLKVDGKIVERPQHMLMRVSCGI--- 178
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
S AI+ YNL+S F +TPTLFNSGT + QLSSC+L T DD + GI+E++K+
Sbjct: 179 HSGDIDAAIETYNLMSERWFTHATPTLFNSGTPKPQLSSCFLLTTQDDSIDGIYETLKQC 238
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G +R+ GS IKGTNG S G+IP L+V ND A V+QGG KRKGA
Sbjct: 239 AKISQSAGGIGLSIHNIRATGSYIKGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFA 298
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH D+ EF++LRKN G + R D+ A+W+ DLFMKRV + W+LF P++ P
Sbjct: 299 IYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENGDWSLFCPHEAPG 358
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +GK+FE LYE K G+ + K I A LW IL ETG P++ +KDA N
Sbjct: 359 LADCYGKDFE---ALYEKYEKEGRAR--KTIKAQELWFAILEAQVETGTPYMLYKDAANR 413
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G I SSNLCTEI TS E+ VCNL S+ L + NGK D KL +A
Sbjct: 414 KSNQKNLGTIKSSNLCTEIMEFTSPEEVAVCNLASLALPKFVINGKFDHQKLYDVTYVAT 473
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +ID+NYY V +A+ SN RHRP+GLG+ G D ++++P+ S EA + E
Sbjct: 474 KNLNKIIDVNYYPVPEAERSNKRHRPIGLGVQGLADAFILLRMPFESDEAKQLNIDIHET 533
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS +LAE+ G Y ++ GS +GI D + S +W+
Sbjct: 534 IYYAAMTASKDLAEKLGPYETFKGSPVSKGIFQFDMWGV-----------TPASGRYDWE 582
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
L+ +KK G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N++L+
Sbjct: 583 ALKREVKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLL 642
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L K LWD+ M L +G++ I+ IP +++ +Y TA+EI +I+ + R +I
Sbjct: 643 KDLIKLNLWDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAWEIKGKTLIDMSADRGAYI 702
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLD 713
QSQSLNI++ + KL + AW +GLKT YYLR+ SA A + E +
Sbjct: 703 CQSQSLNIFMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSAANAIQFTVEKQAEV---- 758
Query: 714 EISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+++ ++++ + + K + S +++ CESC
Sbjct: 759 QLAPGTTDQSIVDAEKKAKDMACS-LDNPEGCESC 792
>gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa
Japonica Group]
Length = 814
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 290/773 (37%), Positives = 428/773 (55%), Gaps = 61/773 (7%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + Y + + G++ L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIKDM-----YGHFNER---SGLNAPLVAHDVYEV 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N S L + ++ +RD ++Y G K L Y L + G +E PQ MR+++G+ ++
Sbjct: 124 IMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AIK Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI++++KE A+
Sbjct: 184 ---ESAIKTYHLMSQRWFTHASPTLFNAGTTRPQLSSCFLICMKDDSIEGIYDTLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI EF++LRKN G + R D+ A+WVPDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE+ Y YE + K KI + A LW IL ETG P++ +KD CN +S
Sbjct: 361 DCWGDEFEKLYTKYEREGKAKKI-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-------------------- 396
QQ++G I SSNLCTEI TS E VCNL SI L +
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +IDINYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I +++ AS ELA ++G Y +Y+GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
+R NW LR+ I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 DR------------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L + G+W ++ + Y DG++ +++ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ R +IDQSQSLN+++ + KL + AW +GLKT YYLR+ +A
Sbjct: 704 EIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
A K +D+ L G +E K + +N+ EC +C
Sbjct: 764 ADAIK----FTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812
>gi|68448942|gb|AAY97064.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
gi|68449144|gb|AAY97265.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
gi|300872688|gb|ADK39090.1| ribonucleotide reductase protein large subunit [Monkeypox virus]
gi|451327749|gb|AGF36621.1| ribonucleotide reductase large subunit [Monkeypox virus]
gi|451327957|gb|AGF36828.1| ribonucleotide reductase large subunit [Monkeypox virus]
gi|451328099|gb|AGF36969.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
Length = 771
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
+LAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEHLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|62288418|gb|AAX78464.1| unknown [synthetic construct]
Length = 797
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 157 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 213
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 214 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 273
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 274 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 333
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 334 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 393
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 394 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 448
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 449 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 508
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 509 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 568
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 569 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 616
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 617 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 676
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 677 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 735
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 736 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 769
>gi|132610|sp|P20503.1|RIR1_VACCC RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleotide reductase large subunit
gi|56404829|sp|Q76RD8.1|RIR1_VACCA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleotide reductase large subunit
gi|335407|gb|AAA48059.1| putative I4L [Vaccinia virus Copenhagen]
gi|2772697|gb|AAB96436.1| ribonucleotide reductase, large subunit [Vaccinia virus]
gi|38348940|gb|AAR17916.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|44971425|gb|AAS49775.1| RPXV062 [Rabbitpox virus]
gi|47088393|gb|AAT10463.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|56713441|gb|AAW23481.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
gi|56713725|gb|AAW23763.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
gi|88900691|gb|ABD57603.1| VACV069 [Vaccinia virus]
gi|90819733|gb|ABD98543.1| VACV-DUKE-081 [Vaccinia virus]
gi|160857955|emb|CAM58243.1| ribonucleotide reductase large subunit [Vaccinia virus Ankara]
gi|167412562|gb|ABZ79996.1| ribonucleotide reductase large subunit [Vaccinia virus GLV-1h68]
gi|373448450|gb|AEY73831.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|373448691|gb|AEY74071.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|373449403|gb|AEY74780.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|439965920|gb|AGB75794.1| ribonucleotide reductase large subunit [Vaccinia virus]
Length = 771
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|308501413|ref|XP_003112891.1| CRE-RNR-1 protein [Caenorhabditis remanei]
gi|308265192|gb|EFP09145.1| CRE-RNR-1 protein [Caenorhabditis remanei]
Length = 786
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 270/658 (41%), Positives = 398/658 (60%), Gaps = 24/658 (3%)
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
E N L++A++ +RD + Y G K L Y L I +E PQ MR+++G+ +
Sbjct: 131 EKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGEDI- 189
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ AL+
Sbjct: 190 --AAAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA YL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH D+ EF+ LRKNTG + R D+ +A+W+PDLFMKRV K W+L P + P L +
Sbjct: 308 EPWHADVFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQNWSLMCPCECPGLDD 367
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +S
Sbjct: 368 CWGEEFEALYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRKSN 422
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI ++ +EI VCNL SI L ++ K D KL + ++ +
Sbjct: 423 QQNLGTIKCSNLCTEIMEYSAPDEIAVCNLASIALNRYVTPEKKFDFKKLAEVTKVITKN 482
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++SK+A + E I
Sbjct: 483 LNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSKQARDLNKRIFETIY 542
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELAE G YS+Y+GS +G L D V ++ +W L
Sbjct: 543 YAALEASCELAERDGPYSTYEGSPVSKGQLQFD------------MWGVTPTDQCDWAAL 590
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +I G+RNS +A PTA+ + I+G + SIEP N++ + LSG+F +N +++K+
Sbjct: 591 RKKIATHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKD 650
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW + M L +G++ I IP D++++Y T +EIS IIE + R +IDQ
Sbjct: 651 LVERGLWTDEMKNRLIANNGSIQNIPEIPADIKELYLTVWEISQKEIIEMAADRGAFIDQ 710
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLD 713
SQSLNI+++ S + + W +GLKT YYLR+ A A + + G +D
Sbjct: 711 SQSLNIHMAKPSYAAITSMHFYGWKQGLKTGMYYLRTKPAVNAVQFTVDKGALKAKVD 768
>gi|66275870|ref|YP_232955.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|132611|sp|P12848.1|RIR1_VACCW RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleotide reductase large subunit
gi|335666|gb|AAB59806.1| ribonucleotide reductase [Vaccinia virus]
gi|29692179|gb|AAO89352.1| ribonucleotide reductase large subunit [Vaccinia virus WR]
gi|325514088|gb|ADZ24082.1| ribonucleotide reductase large subunit protein [Cowpox virus]
Length = 771
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|405962741|gb|EKC28390.1| Ribonucleoside-diphosphate reductase large subunit [Crassostrea
gigas]
Length = 790
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 292/756 (38%), Positives = 435/756 (57%), Gaps = 52/756 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF D+ ++ + NK + +++P++
Sbjct: 75 KHPDYAILAARIAVSNLHKETKKVFS------DVMDDLYKWINPKTNK--HSPMISPEIH 126
Query: 60 EF---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
N L++A++ +RD + Y G K L Y L I G E PQ MR+A+G+ N
Sbjct: 127 SIIMKNADRLNSAIIFDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHHN 186
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
+ + AI+ YNLLS F ++PTLFN+GT R QLSS + GI++++K+ A
Sbjct: 187 DIDG---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSS---------IEGIYDTLKQCA 234
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
L+SK AGG+G + +RS GS I GTNG S G++P L+V N+ A V+QGG KR GA
Sbjct: 235 LISKSAGGIGLNVHCIRSTGSYIAGTNGTSNGLLPMLRVYNNTARYVDQGGNKRPGAFAI 294
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+ F++ +KNTG + +R D+ A+W+PDLFMKRV K WTL P++ P L
Sbjct: 295 YLEPWHADVFMFLDCKKNTGKEEQRARDLFYAMWIPDLFMKRVEKNEEWTLMDPHECPGL 354
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G+EFE Y YE + K G+ K I A LW I+ ETG P++ +KD CN +
Sbjct: 355 HDCWGEEFETLYQKYEQEGK-GR----KTIKAQQLWYAIIEAQTETGTPYMLYKDHCNRK 409
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAM 414
S QQ++G I SNLCTEI +S +E+ VCNL SI L +++K K D KLK ++ +
Sbjct: 410 SNQQNLGTIKCSNLCTEIVEYSSPDEVAVCNLASIALNMYVKPDKTYDFEKLKSVTKVIV 469
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ +IDINYY V +A+ SN+RHRP+G+G+ G D +M+ P+ S+EA Q E
Sbjct: 470 RNLNKIIDINYYPVPEAERSNMRHRPIGIGVQGLADAFILMRYPFESEEAQLLNKQIFET 529
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELAE G Y +Y G +GIL D V ++ +W
Sbjct: 530 IYYAALEASCELAERDGPYETYQGCPVSKGILQHD------------MWNVTPTDLHDWN 577
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +IKK G+RNS +A PTA+ + I+G + SIE N++ + LSGEF +N++L+
Sbjct: 578 SLRAKIKKHGIRNSLLLAPMPTASTAQILGNNESIEAYTSNIYSRRVLSGEFQVVNQHLM 637
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K++ ++GLWD+ M + + G++ I +IP ++R +Y T +EIS +++ + R +I
Sbjct: 638 KDMTERGLWDDDMKNKIIAYGGSIQNIEKIPKEIRDLYKTVWEISQKTVLKMAADRGAFI 697
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLD 713
DQSQSLNI+I+ + KL + AW GLKT YYLR+ A S + +D L
Sbjct: 698 DQSQSLNIHIAEPNYGKLTSMHFYAWKLGLKTGMYYLRTKPA----ASAIKFTVDKTKLT 753
Query: 714 EISIK-GYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ S K + ++E N ++ S + + +C C
Sbjct: 754 QPSGKSAAEQEMEETTQNMAAMVCS-LQNKEDCMMC 788
>gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group]
gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group]
gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group]
Length = 814
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 290/773 (37%), Positives = 428/773 (55%), Gaps = 61/773 (7%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + Y + + G++ L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIKDM-----YGHFNER---SGLNAPLVAHDVYEV 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N S L + ++ +RD ++Y G K L Y L + G +E PQ MR+++G+ ++
Sbjct: 124 IMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AIK Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI++++KE A+
Sbjct: 184 ---ESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI EF++LRKN G + R D+ A+WVPDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE+ Y YE + K KI + A LW IL ETG P++ +KD CN +S
Sbjct: 361 DCWGDEFEKLYTKYEREGKAKKI-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-------------------- 396
QQ++G I SSNLCTEI TS E VCNL SI L +
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +IDINYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I +++ AS ELA ++G Y +Y+GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
+R NW LR+ I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 DR------------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L + G+W ++ + Y DG++ +++ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ R +IDQSQSLN+++ + KL + AW +GLKT YYLR+ +A
Sbjct: 704 EIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
A K +D+ L G +E K + +N+ EC +C
Sbjct: 764 ADAIK----FTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812
>gi|373447260|gb|AEY72646.1| ribonucleotide reductase large subunit [Vaccinia virus]
Length = 771
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|423133179|ref|ZP_17120826.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CIP 101113]
gi|371649235|gb|EHO14716.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CIP 101113]
Length = 797
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 272/694 (39%), Positives = 416/694 (59%), Gaps = 39/694 (5%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L + ++ +RD ++Y G K L Y L + G +E PQ MR+A+G+ L++ + I
Sbjct: 130 LDSTIIYQRDFNYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVAVGIHLDDID---SVI 186
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+ A +S+ AGG
Sbjct: 187 ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEGIYDTLKQTAKISQSAGG 246
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ YLE WH D
Sbjct: 247 IGLSIHNVRATGSYIRGTNGTSNGIVPMLRVYNDTARYVDQGGGKRKGSFAIYLEPWHAD 306
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FIELRKN G + R D+ +A+W+ DLFM+RV WTL P + P L + +G+EF
Sbjct: 307 VFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMCPNECPGLCDVYGEEF 366
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YEN+ K G+ + I A LW +L ETG P++ +KDA N +S Q+++G+
Sbjct: 367 EQLYLKYENEGK-GR----RTIKARELWEAVLEAQIETGTPYMLYKDAANAKSNQKNLGV 421
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SSNLCTEI TS +E+ VCNL SI+L + +++G+ + L + R L+ VID
Sbjct: 422 IRSSNLCTEIMEYTSPDEVAVCNLASISLPMFVEDGQFNHQFLFDVTKRITRNLNRVIDR 481
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY V++A SN+RHRPVGLG+ G D +M++P++S EA + + E I + A AS
Sbjct: 482 NYYPVEEAYNSNMRHRPVGLGVQGLADAFIMMRMPFTSPEAKQLNQEIFETIYFAALTAS 541
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
E+A+E+G YS+++GS +G + + ++E ++ +W LR +
Sbjct: 542 MEMAKEEGAYSTFEGSPISKGEFQYNMWGVKDEELSGRW---------DWASLRKEVMAS 592
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS +A PTA+ S I+G + + EP N++ + LSGEF +N++L+K+L + GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVELGLW 652
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E + + +G++ I IP D+R++Y T +E+S II+ R +IDQSQSLN++
Sbjct: 653 NEDLKQEIMRANGSIQHIDFIPADIRELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNLF 712
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA--------NYAKKSNFEMGIDSVNLDE 714
+ + KL + AW GLKT YYLR+ SA N KK+N I+ V +
Sbjct: 713 MEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLNNEKKTN-PNAIEEVG--Q 769
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+S++ Y LQ + N+ +CE C
Sbjct: 770 VSVEDYQAMLQRAR--------MAANNDEDCEMC 795
>gi|57505360|ref|ZP_00371289.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
upsaliensis RM3195]
gi|57016496|gb|EAL53281.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
upsaliensis RM3195]
Length = 789
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 304/752 (40%), Positives = 421/752 (55%), Gaps = 104/752 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF + +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFERGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-IEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERDLQF YLG+K LYDRY + + IE+PQ FM IAM L+ NE + ++
Sbjct: 123 DLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKVEPIELPQQMFMAIAMFLAQNEFDPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + D++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGNIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ D+FMKR+ WTLF P D PDL N +G+ F
Sbjct: 303 INDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLFDPADTPDLCNLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + I A LW+KIL FETG P++ FKD N +P H GI
Sbjct: 363 EKRYEEYEKDDSIVK----EIIDAKELWKKILLNYFETGLPFLCFKDNANRANPNSHTGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SIN
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVIIDGGYEKPAKKISTLDSING 478
Query: 392 ----LTLHMKN-GK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ KN GK L I L K + IA+RMLDNVID+N+Y K K
Sbjct: 479 QKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRMLDNVIDLNFYPHIKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L +I + S+E D+ ME + Y A AS+ LA EKG
Sbjct: 539 NTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLSYEAILASSNLAIEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKE---RGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
Y + GS W +GI P D K RG + + S +W +LR ++K GMRN
Sbjct: 599 YPDFKGSKWSEGIFPIDVASEKAKALTLRGGLFAQ----SSCDWDQLRQKVKNDGMRNGY 654
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+AIAPT++IS ++G + +IEP Y+ + NLSG + +
Sbjct: 655 LMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VP 696
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NK 667
NL NL + + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 697 NL-----NL--------ETWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKA 743
Query: 668 SGKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
SG L+E Y LA G+K+TYYLRS S + K
Sbjct: 744 SGGYLNEIYTLAHELGVKSTYYLRSESPDSEK 775
>gi|325559314|gb|ADZ30689.1| ribonucleotide reductase large subunit protein [Cowpox virus]
Length = 771
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDI---ESAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ +W+ L+++I+ +
Sbjct: 543 CELAEKEGPYETYTGSYASNGILQYDLWNVVP------------SDLWDWESLKDKIRSY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NEE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|423328774|ref|ZP_17306581.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CCUG 3837]
gi|404604336|gb|EKB03970.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
odoratimimus CCUG 3837]
Length = 797
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 271/694 (39%), Positives = 417/694 (60%), Gaps = 39/694 (5%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L + ++ +RD ++Y G K L Y L + G +E PQ MR+A+G+ L++ + I
Sbjct: 130 LDSTIIYQRDFNYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVAVGIHLDDID---SVI 186
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+ A +S+ AGG
Sbjct: 187 ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEGIYDTLKQTAKISQSAGG 246
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ YLE WH D
Sbjct: 247 IGLSIHNIRATGSYIRGTNGTSNGIVPMLRVYNDTARYVDQGGGKRKGSFAIYLEPWHAD 306
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ +FIELRKN G + R D+ +A+W+ DLFM+RV WTL P + P L + +G+EF
Sbjct: 307 VFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMCPNECPGLCDVYGEEF 366
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YEN+ K G+ + I A LW +L ETG P++ +KDA N +S Q+++G+
Sbjct: 367 EQLYLKYENEGK-GR----RTIKARELWEAVLEAQIETGTPYMLYKDAANAKSNQKNLGV 421
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SSNLCTEI TS +E+ VCNL SI+L + +++G+ + L + R L+ VID
Sbjct: 422 IRSSNLCTEIMEYTSPDEVAVCNLASISLPMFVEDGQFNHQFLFDVTKRITRNLNRVIDR 481
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY V++A SN+RHRPVGLG+ G D +M++P++S EA + + E I + A AS
Sbjct: 482 NYYPVEEAYNSNMRHRPVGLGVQGLADAFIMMRMPFTSPEAKQLNQEIFETIYFAALTAS 541
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
E+A+E+G YS+++GS +G + + ++E ++ +W LR +
Sbjct: 542 MEMAKEEGAYSTFEGSPISKGEFQYNMWGVKDEELSGRW---------DWASLRKEVMAN 592
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS +A PTA+ S I+G + + EP N++ + LSGEF +N++L+K+L + GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVELGLW 652
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E + + +G++ I IP D+R++Y T +E+S II+ R +IDQSQSLN++
Sbjct: 653 NEDLKQEIMRANGSIQHIDFIPADIRELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNLF 712
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA--------NYAKKSNFEMGIDSVNLDE 714
+ + KL + AW GLKT YYLR+ SA N KK+N I+ V ++
Sbjct: 713 MEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLNNEKKAN-PNAIEEV--EQ 769
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+S++ Y LQ + N+ +CE C
Sbjct: 770 VSVEDYQAMLQRAR--------MAANNDEDCEMC 795
>gi|327403796|ref|YP_004344634.1| ribonucleoside-diphosphate reductase subunit alpha [Fluviicola
taffensis DSM 16823]
gi|327319304|gb|AEA43796.1| ribonucleoside-diphosphate reductase, alpha subunit [Fluviicola
taffensis DSM 16823]
Length = 789
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/691 (39%), Positives = 410/691 (59%), Gaps = 33/691 (4%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N LL ++++ +RD +++Y G K L Y L +G E PQ MR+A+G+ N+ +
Sbjct: 126 NSELLDSSIIYDRDFRYDYFGFKTLTRSYLLRTKGEIAERPQQMLMRVAVGIHKNDLPQ- 184
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AIK YNL+S F +TPTLFN+GT + Q+SSC+L T+ DD + GI+E++K A +S+
Sbjct: 185 --AIKTYNLMSEGWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIEGIYETLKSCAQISQ 242
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +R+ GS IKGTNG S G++P L+V ND A V+QGG KRKG+ Y+E
Sbjct: 243 SAGGIGLAIHNIRATGSYIKGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYIEP 302
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH D+ +F++L+KNTG + R D+ A+W+PDLFMKRV + WTL P++ P L + F
Sbjct: 303 WHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVEENGDWTLMCPHECPGLSDTF 362
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE Y YE + K G+ K I A LW K+L ETG P++ +KDA N +S QQ
Sbjct: 363 GAEFEALYTQYETEGK-GR----KTIKAQDLWFKVLESQIETGTPYMLYKDAANAKSNQQ 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKTIRIAMRMLD 418
++G+I SSNLCTEI T+ +EI VCNL S+ L ++ ++GK D KL + A L+
Sbjct: 418 NLGVIKSSNLCTEIIEYTAPDEIAVCNLASLALPKYVTEDGKFDHDKLFEVTYQATVNLN 477
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+ID N+Y V++A+ SN+RHRP+GLG+ G D +++ P+ S+EA + E I Y
Sbjct: 478 RIIDGNFYPVEEARKSNMRHRPIGLGVQGLADTFIMLRYPFESEEARALNREIFETIYYA 537
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA +G Y +Y GS +G+ D + R W L+
Sbjct: 538 AMTASKDLAMAEGPYETYAGSPVSKGVFQYDMWGVTPTSR------------WEWDLLKE 585
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+ K+G+RNS VA PTA+ + I+G + EP N++ + LSGEF +N++L+K+L
Sbjct: 586 EVAKYGVRNSLLVAPMPTASTAQILGNNECFEPYTSNIYTRRVLSGEFIIVNKHLLKDLV 645
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
K+GLW + M L +G++ I+ IP ++ +Y TA+EIS IIE + R +I QSQ
Sbjct: 646 KEGLWTKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWEISQKAIIEQAADRGAYICQSQ 705
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISI 717
SLNI++ N + KL + W +GLKT YYLR+ +A A K + +V + +I
Sbjct: 706 SLNIFMENANFGKLTSMHFYGWKKGLKTGMYYLRTKAATDAIKFTVD---KAVTEEPAAI 762
Query: 718 KGYNKNLQEIKNNKKCLINSEINDVNECESC 748
L+E ++ I +++ + CE C
Sbjct: 763 SA--AELEE----QQAAIACSLDNPDNCEMC 787
>gi|242014390|ref|XP_002427874.1| Ribonucleoside-diphosphate reductase large chain, putative
[Pediculus humanus corporis]
gi|212512343|gb|EEB15136.1| Ribonucleoside-diphosphate reductase large chain, putative
[Pediculus humanus corporis]
Length = 795
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 294/752 (39%), Positives = 434/752 (57%), Gaps = 51/752 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFIN-KGIDNKLLNPKLAEF 61
+ P Y+ + AR+ + + KE + + + + N K N+ P L+++
Sbjct: 73 QHPDYAILAARIAVSNLHKET----------KVSFSDVMTDLYNMKNSFNQQPTPMLSDY 122
Query: 62 NLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ + L+ A++ ERD +NY G K L Y L I G +E PQ MR+A+GL
Sbjct: 123 HYDIIIKHADELNAAIIYERDYNYNYFGFKTLERSYLLKINGKVVERPQHMLMRVAVGLH 182
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
++ + AI+ YNLLS F ++PTLF++ T + QLSSC+L T+ +D + GI+E++K
Sbjct: 183 GDDISS---AIETYNLLSEKYFTHASPTLFSAATRKPQLSSCFLLTMKEDSIDGIYETLK 239
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
+ AL+SK AGG+G + +RS G+ I GTNG S G++P L+V N+ A V+QGG KR GA
Sbjct: 240 QCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARYVDQGGNKRPGA 299
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLE WH DI EF++L+KNTG + R D+ A+W+PDLFM+RV + W L P
Sbjct: 300 FAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQEWCLMCPKTC 359
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G+EF + Y+ YE K KK+ A LW I+ ETG P++ +KDAC
Sbjct: 360 PGLSDCWGEEFNKLYLSYEE-----KGLYVKKVKAQSLWYAIIESQVETGTPYMLYKDAC 414
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPI-KLKKTIR 411
N +S QQ++G I SNLCTEI +S EI VCNL SI + + +K K KLK +
Sbjct: 415 NRKSNQQNLGTIKCSNLCTEIVEYSSPEEIAVCNLASIAVNMFVKPDKTYNFEKLKDVTK 474
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
I + L+ VIDI YY V +AK SNLRHRP+G+GI G D +M++P+ S EA K Q
Sbjct: 475 IITKNLNKVIDITYYPVPEAKLSNLRHRPIGIGIQGLADAFILMRLPFDSPEAQKLNIQI 534
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y A AS+ELA G Y +Y+GS +GIL D V +
Sbjct: 535 FETIYYGALEASSELAAIHGPYETYEGSPASKGILQYD------------MWGVTPTNLW 582
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W L+N+IKK+G+RNS +A PTA+ + I+G + S EP N++ + LSGEF +N+
Sbjct: 583 DWDALKNKIKKWGIRNSLLIAPMPTASTAQILGNNESFEPYTTNIYTRRVLSGEFQVVNQ 642
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
+L+K+L + GLW++ M + G++ I IP +L+ +Y T +EIS I++ + R
Sbjct: 643 HLLKDLTEIGLWNDEMKNTIIANGGSIQNIDSIPKELKALYKTVWEISQKVILKMAADRG 702
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMG---I 707
+IDQSQSLNI+I+ + KL + AW GLKT YYLR+ A A+ F + +
Sbjct: 703 AFIDQSQSLNIHIAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPA--AQPIQFTVDKTKV 760
Query: 708 DSVNLDEISIKGYNKNLQEI----KNNKKCLI 735
++ N+ E+S + N++ I +N CL+
Sbjct: 761 NNANVKEVSTEKDKFNMESISCSLQNKDDCLM 792
>gi|402495789|ref|ZP_10842509.1| ribonucleoside-diphosphate reductase large chain [Aquimarina
agarilytica ZC1]
Length = 816
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/720 (39%), Positives = 426/720 (59%), Gaps = 38/720 (5%)
Query: 5 PVYSQVTARLLMYCIQK---EVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP---KL 58
P Y+Q+ AR+ + + K + F + +K + EY + G D L+ K+
Sbjct: 71 PDYAQLAARISVSNLHKNTKKTFSEVVKDL------YEYVNP--RTGKDAALIADDVYKV 122
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N L + ++ RD ++Y G K L Y L + G E PQ MR+++G+ +++
Sbjct: 123 VMENKEKLDSTIIYNRDFSYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIHIDDL 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+ A
Sbjct: 183 D---AAIETYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQTAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G +R+ GS I GTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 240 ISQSAGGIGLSIHNIRATGSYISGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIY 299
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
+E WH DI +F+ELRKN G + R D+ A+W+ DLFMKRV WTL P++ P L+
Sbjct: 300 MEPWHADIFDFLELRKNHGKEEMRARDLFYAMWISDLFMKRVEADENWTLMCPHECPGLY 359
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +EFE Y YE + K G+ + + A +W K+L ETG P++ +KDA N +S
Sbjct: 360 DVHSEEFESLYTRYEAEGK-GR----RTVKAREVWEKVLESQIETGTPYMLYKDAANRKS 414
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
Q+++G I SSNLCTEI TS +EI VCNL SI L + +K GK D +L K + +
Sbjct: 415 NQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASIALPMFVKGGKFDHDELFKVTKRVTKN 474
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY VK+A+ SN+RHRPVGLGI G D ++++P++S EA K ++ E +
Sbjct: 475 LNKVIDRNYYPVKQAENSNMRHRPVGLGIQGLADTFIMLRMPFTSDEAKKLNEEIFETMY 534
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS ELAE +G Y SY+GS QG + + ++E ++ +WK L
Sbjct: 535 FAAVTASNELAEVEGTYESYEGSPISQGEFQFNLWGIKDEELSGRW---------DWKAL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +I+K G+RNS +A PTA+ S I+G + + EP N++ + LSGEF +N++L+ +
Sbjct: 586 RAKIQKSGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHD 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L + GLW++ + + +G++ I IP DL+++Y T +E+S II+ R +IDQ
Sbjct: 646 LVELGLWNDDLKDAIMRANGSIQNIDGIPQDLKELYKTVWEMSMKDIIDMSRHRGYFIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA----NYAKKSNFEMGIDSVN 711
SQSLN+++ + KL + AW GLKT YYLR+ SA + K+N E+ SV+
Sbjct: 706 SQSLNLFMEGANNAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLKTNSEVEKPSVD 765
>gi|213512716|ref|NP_001133985.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
gi|209156060|gb|ACI34262.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
gi|223648756|gb|ACN11136.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
Length = 792
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 287/762 (37%), Positives = 438/762 (57%), Gaps = 57/762 (7%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGID-----NKLLNPK 57
K P Y+ + AR+ + + KE K+ FS + + N+ +P
Sbjct: 70 KHPDYAILAARIAVSNLHKET--------------KKVFSDVVEDLYNYVNPLNRCHSPM 115
Query: 58 LAEFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+A+ L + L++A++ +RD +N+ G K L Y L I G E PQ MR+A
Sbjct: 116 VAKETLDIVLENKDRLNSAIIFDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVA 175
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIF 169
+G+ + + I+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI+
Sbjct: 176 VGIHQTDID---AVIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIY 232
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-K 228
+++K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG K
Sbjct: 233 DTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNK 292
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
R GA YLE WH D+ +F++L+KNTG + +R D+ +W+PDLFMKRV W+L
Sbjct: 293 RPGAFAMYLEPWHFDVFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMC 352
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P D P L +G+EFE+ Y YE + ++ ++ + A +W I+ ETG P++ +
Sbjct: 353 PSDCPGLDECWGEEFEKLYTRYEQEGRVKRV-----VKAQQVWHAIIESQTETGTPYMLY 407
Query: 349 KDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLK 407
KDACN +S QQ++G I SSNLCTEI TS +E+ VCNL SI L +++ + D KL
Sbjct: 408 KDACNRKSNQQNLGTIKSSNLCTEIVEYTSHDEVAVCNLASIALNMYVTPERTFDFSKLA 467
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
++ +R L+ +I+INYY V +A+ SN RHRP+G+G+ G D +M+ P+ S EA K
Sbjct: 468 YVTKVIVRNLNKIIEINYYPVVEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQKL 527
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
Q E I Y A +S ELA E G Y +Y GS +GIL + +K
Sbjct: 528 NTQIFETIYYAALESSCELAAELGAYETYPGSPVSKGIL---QYNMWDK---------TP 575
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
++ +W L+ I K G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF
Sbjct: 576 TDLWDWTLLKENIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQ 635
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
+N +L+K+L ++GLW+E M L +G++ I+ IPDDL+++Y T +EIS I++
Sbjct: 636 IVNPHLLKDLTERGLWNEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWEISQKTILKMA 695
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMG 706
+ R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A A F
Sbjct: 696 ADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA--ANPIQF--- 750
Query: 707 IDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
++N +++ KNL+ +K + + + + ++C C
Sbjct: 751 --TLNKEKLKESQSAKNLEALKELNRAAMVCSLENRDDCLMC 790
>gi|88854118|gb|ABD52536.1| ribonucleotide reductase large subunit M1 [Vaccinia virus]
Length = 771
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SNLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|17974978|ref|NP_536492.1| I4L [Monkeypox virus Zaire-96-I-16]
gi|17529845|gb|AAL40523.1|AF380138_65 I4L [Monkeypox virus Zaire-96-I-16]
Length = 771
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 262/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ G I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGGYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPRLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
+LAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEHLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI+ II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIAQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|6969720|gb|AAF33932.1| TI4L [Vaccinia virus Tian Tan]
Length = 771
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GFRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|47497381|dbj|BAD19419.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
gi|125584063|gb|EAZ24994.1| hypothetical protein OsJ_08774 [Oryza sativa Japonica Group]
gi|186920366|gb|ACC95436.1| ribonucleotide diphosphate reductase large subunit 2 [Oryza sativa
Japonica Group]
Length = 810
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 292/777 (37%), Positives = 433/777 (55%), Gaps = 73/777 (9%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + Y Y + + LL P +A+
Sbjct: 72 PDYASLAARIAISNLHKTTMKSFSETIK-----VMYMHYDER-------SGLLAPLIADD 119
Query: 62 -------NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
N + L + ++ +RD ++Y G K L Y L + G +E PQ MR+++G+
Sbjct: 120 VYEIIMKNTTRLDSEIIYDRDFDYDYFGFKTLERSYLLKVVGKVVERPQHMLMRVSIGIH 179
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
++ + AIK Y+++S F ++PTLFN+GT R QLSSC+L + DD + GI++++
Sbjct: 180 KDDI---ESAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMNDDSIEGIYDTLS 236
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
E A +SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA
Sbjct: 237 ECATISKCAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGA 296
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLE WH DI EF++LRKN G + R D+ A+W+PDLFM+RV W+LF P +
Sbjct: 297 FAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNENWSLFCPNEA 356
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G EF+ Y YE + K K+ +SA LW IL ETG P++ +KD+C
Sbjct: 357 PGLADCWGDEFQNLYKKYEREGKAKKV-----VSAQALWFDILKAQIETGTPYMLYKDSC 411
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM---------------- 396
N +S QQ++G I SSNLCTEI TS E VCNL SI L +
Sbjct: 412 NRKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIGLPRFVREKGVPMESHPAKLVG 471
Query: 397 ----KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCL 452
KN D KL + I R L+ +ID NYY V+ AK SN+RHRP+G+G+ G D
Sbjct: 472 SNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGVQGLADTF 531
Query: 453 HIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLK 512
++ +P+ S EA + E I Y+A AS E+A ++G Y +Y GS +GIL D
Sbjct: 532 ILLGMPFDSTEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWN 591
Query: 513 LLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPT 572
++ +R NW LR I K G+RNS +A PTA+ S I+G + EP
Sbjct: 592 VVPSDR------------WNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPY 639
Query: 573 YRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIY 632
N++ + LSGEF +N++L+ +L + G+W + + Y DG++ +IS IPDDL+ IY
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIY 699
Query: 633 ATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLR 691
T +EI I++ R +IDQSQSLNI++ + KL + AW +GLKT YYLR
Sbjct: 700 RTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLR 759
Query: 692 SISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ +A A K +D+ L + K +N +++++ ++ S +N+ +EC +C
Sbjct: 760 TRAAADAIK----FTVDTTLLKD---KQHNAEEEDVQSKMAEVVCS-LNNRDECLAC 808
>gi|328770641|gb|EGF80682.1| hypothetical protein BATDEDRAFT_16482 [Batrachochytrium
dendrobatidis JAM81]
Length = 796
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/686 (40%), Positives = 400/686 (58%), Gaps = 33/686 (4%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +N+ G K L Y L I E PQ MR+A+G+ +
Sbjct: 127 NADRLNSAIIYDRDFNYNFFGFKTLERSYLLRINRKTAERPQHMLMRVAVGI---HGDDV 183
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
+ I+ YNL+S F ++PTLFN+GT Q+SSC+L T+ DD + GI+ ++K A++SK
Sbjct: 184 EAVIETYNLMSEKYFTHASPTLFNAGTPNPQMSSCFLLTIEDDSIEGIYSTLKTCAMISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + ++RS GS I GTNG S G+IP L+V N+ A V+QGG KR GA YLE
Sbjct: 244 TAGGIGLNVHKIRSSGSYIAGTNGLSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH D+ EF++LRKNTG + R D+ A+W+PD+FM+RV W+LF P + P L + +
Sbjct: 304 WHADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWSLFCPAEAPGLDDVW 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EF+ Y YE + + KI I A LW IL ETG P++ +KDACN +S QQ
Sbjct: 364 GDEFDALYEKYEREGRARKI-----IKAQKLWYAILDSQSETGTPYMLYKDACNRKSNQQ 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL-TLHMKNGKLDPI----KLKKTIRIAM 414
++G I SNLCTEI +S +E+ VCNL S+ L +K+ P+ K+ T +IA
Sbjct: 419 NLGTIKCSNLCTEIVEYSSPDEVAVCNLASLALPNFVIKDTTGAPVFDFDKMIDTTKIAT 478
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
L+ +I++NYY V++AK SN+RHRP+GLG+ G D M++P+ S EA K Q E
Sbjct: 479 YNLNKIINLNYYPVEQAKRSNMRHRPIGLGVQGLADTFIKMRMPFDSPEAKKLNIQIFEA 538
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A AS ELA+ G Y +Y GS +GI+ D V +S+ +W
Sbjct: 539 IYFAALTASCELAKRDGPYETYSGSPMSKGIIQPD------------MWNVKVSDQFDWP 586
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR I K+G+RNS VA PTA+ S I+G + + EP N++I+ LSGEF +N++L+
Sbjct: 587 TLRANIAKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRRVLSGEFQIVNQHLL 646
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L + GLW+ESM + +G++ I IP L+ IY T +EIS II+ + R +I
Sbjct: 647 KDLTELGLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQKVIIDMAADRGAFI 706
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA-----KKSNFEMGID 708
DQSQSLNI+++ + KL + W +GLKT YYLRS A A K + G +
Sbjct: 707 DQSQSLNIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAIKFTVDKQSLTQGAE 766
Query: 709 SVNLDEISIKGYNKNLQEIKNNKKCL 734
N S+ L ++N C+
Sbjct: 767 DKNNVVASVNNMTDMLCSLENRDACM 792
>gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group]
Length = 814
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 289/773 (37%), Positives = 428/773 (55%), Gaps = 61/773 (7%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + Y + + G++ L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIKDM-----YGHFNER---SGLNAPLVAHDVYEV 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N S L + ++ +RD ++Y G K L Y L + G +E PQ MR+++G+ ++
Sbjct: 124 IMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AIK Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI++++KE A+
Sbjct: 184 ---ESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH DI EF++LRKN G + R D+ A+WVPDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE+ Y YE + K KI + A LW IL ETG P++ +KD CN +S
Sbjct: 361 DCWGDEFEKLYTKYEREGKAKKI-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-------------------- 396
QQ++G I SSNLCTEI TS E VCNL SI L +
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +IDINYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I +++ AS ELA ++G Y +Y+GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
+R NW LR+ I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 DR------------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L + G+W ++ + + DG++ +++ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIFEDGSVQKMTEIPDDLKAIYKTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ R +IDQSQSLN+++ + KL + AW +GLKT YYLR+ +A
Sbjct: 704 EIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
A K +D+ L G +E K + +N+ EC +C
Sbjct: 764 ADAIK----FTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812
>gi|365961082|ref|YP_004942649.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
columnare ATCC 49512]
gi|365737763|gb|AEW86856.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
columnare ATCC 49512]
Length = 803
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 273/706 (38%), Positives = 416/706 (58%), Gaps = 46/706 (6%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINK---------GIDNKLLN 55
P Y+Q+ AR+ + + K K+ FS+ +N G D L++
Sbjct: 71 PDYAQLAARIAISNLHKNT--------------KKSFSETMNDMFHYVSPRTGKDAPLIS 116
Query: 56 PKLAEF---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
++ + N + L + ++ RD ++Y G K L Y L I G E PQ MR+A+G
Sbjct: 117 DEVHKIIMENSAFLDSHIIYNRDFNYDYFGFKTLERSYLLKINGKIAERPQHMLMRVAIG 176
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ LN+ + AI+ Y L+S F +TPTLFN+GT + Q+SSC+L + DD + GI+++
Sbjct: 177 IHLNDL---ESAIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDT 233
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ A +S+ AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRK
Sbjct: 234 LKQTAKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRK 293
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
G+ Y+ETWH DI +F++L+KN G + R D+ A+W DLFMKRV WTL P
Sbjct: 294 GSFAIYIETWHADIMDFLDLKKNHGKEEMRARDLFYAMWTSDLFMKRVESDDKWTLMCPN 353
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L++ +G EFE Y YEN+ + G+ K I A LW KIL ETG P++ +KD
Sbjct: 354 ECPGLYDVYGDEFEALYTKYENEAR-GR----KTIKARELWEKILESQIETGTPYMLYKD 408
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTI 410
A N +S Q+++G I SSNLCTEI TS +EI VCNL S++L + + GK + L K
Sbjct: 409 AANRKSNQKNLGTIRSSNLCTEIMEYTSADEIAVCNLASLSLPMFVDEGKFNHELLYKVT 468
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
+ R L+ VID NYY VK+A+ SN+RHRP+GLG+ G D ++++P++S +A K +
Sbjct: 469 KRVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRMPFTSDDAKKLNQE 528
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E + + A S E+A+E+G YS++ GS +G + + ++E ++
Sbjct: 529 IFETMYFAAVETSMEMAKEEGPYSTFKGSPISEGQFQYNLWGVTDEELSGRW-------- 580
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
+W LR + ++G+RNS +A PTA+ S I+G + + EP N++ + LSGEF +N
Sbjct: 581 -DWASLRKEVIEYGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVN 639
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
++L+++L K GLW+E + + +G++ I RIP DL+ +Y T +E+S II+ R
Sbjct: 640 KHLLEDLVKCGLWNEDLKQEIMRHNGSVQNIDRIPQDLKDLYKTVWEMSMKDIIDMSRQR 699
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
+IDQSQSLN+++ + KL + AW GLKT YYLR+ +A
Sbjct: 700 GYFIDQSQSLNLFMEGATFSKLTSMHFYAWKSGLKTGMYYLRTKAA 745
>gi|381187135|ref|ZP_09894700.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Flavobacterium frigoris PS1]
gi|379650745|gb|EIA09315.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Flavobacterium frigoris PS1]
Length = 808
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/700 (39%), Positives = 417/700 (59%), Gaps = 35/700 (5%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNP---KL 58
P Y+Q+ AR+ + + F + + ++ Y G D LL+ K+
Sbjct: 71 PDYAQLAARIAISNLHSNTTKSFSETMNEM--------YHYVNPRNGQDAPLLSEEVHKV 122
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
+ N L + ++ RD ++Y G K L Y L I G +E PQ MR+++G+ L++
Sbjct: 123 IQENAEFLDSHIIYNRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLDDL 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ ++ Y+L+S F +TPTLFNSGT + Q+SSC+L + DD + GI++++K+ A
Sbjct: 183 ---ESVLETYDLMSKKFFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 240 ISQSAGGVGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIY 299
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
+ETWH DI +F++L+KNTG + R D+ A+W DLFMKRV + WTL P + P L+
Sbjct: 300 IETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDGNWTLMCPNECPGLY 359
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+EFE+ Y YE K GK + K I A LW KIL ETG P++ +KDA N +S
Sbjct: 360 DVYGEEFEKMYTDYE---KAGKGR--KTIKAHELWEKILESQIETGTPYMLYKDAVNRKS 414
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
Q+++G I SSNLCTEI TS +E+ VCNL S++L + + NGK D L + R
Sbjct: 415 NQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASLSLPMFVDNGKFDHESLYTVTKRVTRN 474
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY VK+A+ SN+RHRP+GLG+ G D ++++P++S A K + E +
Sbjct: 475 LNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKKLNQEIFETLY 534
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS E+A+E+G YSS+ GS QG + + ++E ++ +W L
Sbjct: 535 FAAVTASMEMAKEEGPYSSFKGSPMSQGEFQYNLWGMKDEELSGRW---------DWASL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R + + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+ +
Sbjct: 586 RKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHD 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L + GLW+E+M L +G++ + IP DL+++Y T +E+S II+ R ++DQ
Sbjct: 646 LVELGLWNETMKQELMRNNGSVQDLD-IPQDLKELYKTVWEMSMKDIIDMSRQRGYFVDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLN+++ N + KL + AW GLKT YYLR+ +A
Sbjct: 705 SQSLNLFMQNANYSKLTSMHFYAWQSGLKTGMYYLRTKAA 744
>gi|30519447|emb|CAD90622.1| L4L protein [Cowpox virus]
Length = 771
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDI---ESAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L + +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NEE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila
melanogaster]
gi|12644286|sp|P48591.2|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
AltName: Full=Ribonucleoside-diphosphate reductase
subunit M1; AltName: Full=Ribonucleotide reductase large
subunit
gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster]
gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster]
gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila
melanogaster]
gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct]
Length = 812
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 292/757 (38%), Positives = 440/757 (58%), Gaps = 42/757 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF--- 61
P Y+ + AR+ + + KE K + +++ ++ +NK + K+ P ++EF
Sbjct: 83 PDYAILAARIAVSNLHKET-KKAFSDV-----FEDLYNH-VNKETNQKV--PLVSEFHYN 133
Query: 62 ----NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
N + L+++++ +RD +NY G K L Y L G E PQ MR+A+G+ +
Sbjct: 134 VVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGED 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTV-PDDLYGIFESIKENA 176
+ A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GIF+S+++ A
Sbjct: 194 ID---AAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA 250
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG KR GA
Sbjct: 251 MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAI 310
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L P+ P L
Sbjct: 311 YLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGL 370
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G EFE+ Y YE + + + + A LW I+ ETG+P++ FKDACN +
Sbjct: 371 HDVWGDEFEKLYEKYEQEGRANRT-----VKAQSLWFAIIEAQVETGNPYMLFKDACNRK 425
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAM 414
S QQ+VG I SNLCTEI ++ +EI VCNL SI L + + K D KLK+ +I
Sbjct: 426 SNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVT 485
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +IDINYY + +A+ SNLRHRPVG+GI GF D L +M+ PY S+EA Q E
Sbjct: 486 KNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFET 545
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELA+ +G Y +Y+GS +GIL D + +K + N+ +W+
Sbjct: 546 IYYGALEASCELAQTEGPYETYEGSPVSKGILQYD---MWDK------VPTNL---WDWQ 593
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KL+ I+ G+RNS VA PTA+ + I+G + S EP N++ + LSGEF +N +L+
Sbjct: 594 KLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLL 653
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L + LWD+ M + G++ I IP +R +Y T +EIS I+ + R +I
Sbjct: 654 RDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFI 713
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK--SNFEMGIDSVN 711
DQSQS NI+++ + KL + +W GLKT YYLR+ A A + N + G S+N
Sbjct: 714 DQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMN 773
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ +G + +E + K + + + + C SC
Sbjct: 774 GQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810
>gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex
quinquefasciatus]
gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex
quinquefasciatus]
Length = 838
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/657 (41%), Positives = 393/657 (59%), Gaps = 28/657 (4%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I+G +E PQ MR+A+G+ + +
Sbjct: 127 NADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKVVERPQHMLMRVAVGIHGLDID-- 184
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PT+F + T R QLSSC+L T+ DD + GI++++K+ AL+SK
Sbjct: 185 -AAIETYNLLSERYFTHASPTMFAAATRRPQLSSCFLLTMSDDSIDGIYDTLKQCALISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ G+ I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 244 SAGGIGVNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EF++L+KNTG + R DM A+W+PDLFMKRV W L P+D P L +
Sbjct: 304 WHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWCLMCPHDCPGLPETW 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YEN+ + +K+ A LW I+ ETG P++ +KDACN +S QQ
Sbjct: 364 GEEFEKLYTTYENEGRY-----IRKVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQ 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI +SK+EI VCNL SI + + +K K D KLK+ +I + L+
Sbjct: 419 NIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVKPDKSYDFQKLKEVSKIVTKNLN 478
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +AK SN+RHRP+G+G+ G D +M+ PY S+EA K Q E I Y
Sbjct: 479 KIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEAQKLNQQIFETIYYG 538
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS E+AE+ G Y +YDG +GIL D S+ +W L+
Sbjct: 539 ALEASCEIAEKDGTYETYDGCPVSKGILQYDMWNKAP------------SDLWDWAPLKE 586
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K G+RNS +A PTA+ + I+G + S EP N++ + LSGEF +N +L+K+L
Sbjct: 587 KIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLT 646
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+ LWD+ M + +G++ I IP +R++Y T +EIS I+ + R +IDQSQ
Sbjct: 647 ELELWDDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKMAADRGAFIDQSQ 706
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDE 714
S NI+++ + KL + W GLKT YYLR+ A A + +D V L +
Sbjct: 707 SFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNA----IQFTVDKVKLGQ 759
>gi|374288409|ref|YP_005035494.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha
[Bacteriovorax marinus SJ]
gi|301166950|emb|CBW26529.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha
[Bacteriovorax marinus SJ]
Length = 785
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/703 (39%), Positives = 411/703 (58%), Gaps = 36/703 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDN--KLLNPKLAE 60
+ P YS++ R+ + + KE G + I KE ++ ++N L++ +L E
Sbjct: 70 QHPDYSKLAGRIAVSNLHKETRGCFSENI------KEMYN-YVNPATGEMAPLISKELYE 122
Query: 61 F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
N +L A+ +RD ++Y G K L Y L ++G E P MR+++G+ +N+
Sbjct: 123 VVMENAEMLDTAVDDKRDFNYDYFGFKTLERSYLLKMDGKITERPGQMLMRVSVGIHMND 182
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
K AI+ YNL+S F ++PTLFNSGT + QLSSC+L T+ DD + GI++++K++A
Sbjct: 183 M---KAAIETYNLMSEKYFTHASPTLFNSGTSKPQLSSCFLLTMKDDSIEGIYDTLKQSA 239
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
L+S+ AGG+G +R+ GS IKGTNG S G++P LKV ND A V+QGG KRKGA
Sbjct: 240 LISQSAGGIGLSIHNIRAKGSFIKGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGAFAI 299
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI +F+E++KNTG D R D+ A+W+ DLFMKRV W+LF P++ P +
Sbjct: 300 YLEPWHADIFDFLEMKKNTGKDENRARDLFYALWISDLFMKRVEADGMWSLFCPHECPGM 359
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+G EFE Y YE++ K K+ + A LW +L ETG P++ +KD+ N +
Sbjct: 360 AETYGAEFEALYTKYESEGKAKKV-----VRAQDLWFAVLESQIETGSPYMLYKDSINEK 414
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK--LDPIKLKKTIRIA 413
S Q+++G I SSNLCTEI T+ +E+ VCNL SI L + + D KL + A
Sbjct: 415 SNQKNLGTIKSSNLCTEIMEYTAPDEVAVCNLASIALNMFVDEATKTYDHKKLYDVVYRA 474
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
L+ +IDINYY V +AK SN+RHRP+GLG+ G D M+ + S EA++ +Q E
Sbjct: 475 TLNLNRIIDINYYPVPEAKNSNMRHRPIGLGVQGLADTFFKMRYDFESPEALELNNQIFE 534
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I + A AS +LA + G Y +Y+GS QG D + +++ +W
Sbjct: 535 TIYFAALSASKDLAMKDGAYETYEGSPMSQGQFQFDMWGVTPS-----------AKNWDW 583
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR + + G+RNS VA PTA+ S I+G + EP N++++ LSGEF +N++L
Sbjct: 584 SALRKEVAEHGVRNSLLVAPMPTASTSQILGNNECFEPITSNIYVRRVLSGEFAVVNKFL 643
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V +L + GLWD+ M + +G++ I RIP++L+ +Y T +EIS +I + R +
Sbjct: 644 VNDLIRAGLWDDKMRNEIIANNGSIQAIERIPEELKGLYKTVWEISQKTVINMSAGRAPY 703
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
IDQ QSLNI++ + KL + AW GLKT YYLR+ +A
Sbjct: 704 IDQGQSLNIHMQEPNFGKLSSMHFYAWKAGLKTGMYYLRARAA 746
>gi|256421018|ref|YP_003121671.1| ribonucleoside-diphosphate reductase subunit alpha [Chitinophaga
pinensis DSM 2588]
gi|256035926|gb|ACU59470.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
pinensis DSM 2588]
Length = 802
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/644 (41%), Positives = 385/644 (59%), Gaps = 23/644 (3%)
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
++L ++++ +RD F+Y G K L Y L ++G E PQ FMR+++G+ + +
Sbjct: 129 AILDSSIIYDRDFAFDYFGFKTLERSYLLKLDGKVAERPQHMFMRVSVGIHKEDID---A 185
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
IK YNL+S F +TPTLFN+GT + Q+SSC+L T+ DD + GI++++K+ A +S+ A
Sbjct: 186 VIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEGIYDTLKQTAKISQSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G +R+ GS I GTNG S G+IP L+V ND A V+QGG KRKGA YLE WH
Sbjct: 246 GGIGLSIHNIRATGSYISGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
DI EF++LRKN G + R D+ A+WVPDLFM+RV + W+LF P++ P LH +G+
Sbjct: 306 ADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRRVEENGDWSLFCPHEAPGLHECWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ Y YE + + K + A LW +L ETG P++ +KD+ N +S QQ++
Sbjct: 366 EFEKLYTKYEKENRARKT-----VKAQDLWFAVLDAQIETGTPYLLYKDSANRKSNQQNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVI 421
G I SSNLCTEI T NE+ VCNL S+ L + +G+ D KL + A L+ +I
Sbjct: 421 GTIKSSNLCTEIIEYTDANEVAVCNLASLALPRFVIDGQFDHEKLYEVTYQAALNLNRII 480
Query: 422 DINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYY 481
D N+Y V +A+ SNLRHRP+GLG+ G D +M+ P+ S+EA K + E I + A
Sbjct: 481 DNNFYPVDEARNSNLRHRPIGLGVQGLADAFILMRYPFESEEAKKLNSEIFETIYFAALN 540
Query: 482 ASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIK 541
AS +LA + G Y +Y GS +GIL D V S +W L+ IK
Sbjct: 541 ASKDLAIKDGAYETYAGSPVSKGILQFD------------MWGVTPSPRWDWTSLKGEIK 588
Query: 542 KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKG 601
K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N++L+K+L + G
Sbjct: 589 KHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLKDLVELG 648
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLN 661
LWD M + +G++ I IP ++++Y T +EI II+ + R +I QSQSLN
Sbjct: 649 LWDNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWEIKQRTIIDMAADRGAFICQSQSLN 708
Query: 662 IYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFE 704
+++ S KL + AW +GLKT YYLR+ +A A + E
Sbjct: 709 LFVDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAAQAVQFTVE 752
>gi|312130871|ref|YP_003998211.1| ribonucleoside-diphosphate reductase subunit alpha [Leadbetterella
byssophila DSM 17132]
gi|311907417|gb|ADQ17858.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
byssophila DSM 17132]
Length = 820
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/651 (42%), Positives = 399/651 (61%), Gaps = 26/651 (3%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N +LL ++++ +RD +++ G K L Y + + G +E PQ MR+A+G+ +
Sbjct: 122 KIIQANAALLDSSIIYDRDFGYDFFGYKTLEKSYLMKLNGKIVERPQHMLMRVAVGI--H 179
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
N EK AI+ YNLLS F +TPTLFN+GT + QLSSC+L T+ DD + GI++++K+
Sbjct: 180 GENIEK-AIETYNLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKDDSIEGIYDTLKQT 238
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS IKGTNG S G+IP L+V ND A V+QGG KRKG+
Sbjct: 239 AKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGSFA 298
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH DI EF+ L+KN G + R D+ A+W PDLFMKRV + W+LF P++ P
Sbjct: 299 IYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANADWSLFCPHECPG 358
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G++FE Y YE + GK + K I A LW +IL ETG P++ +KDA N
Sbjct: 359 LADTYGEDFERLYTKYEAE---GKAR--KTIPAQELWFQILESQVETGTPYMLYKDAANK 413
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPI----KLKKTI 410
+S Q+++G I SSNLCTEI T+ +E+ VCNL SI L + P KL +
Sbjct: 414 KSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVNTEGPAPSFDFQKLYEVT 473
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
++ R L+ +IDINYY V +A+ SN RHRP+GLGI G D +M+ P+ S+EA K
Sbjct: 474 KVVTRNLNRIIDINYYPVPEAENSNKRHRPIGLGIQGLADAFILMRFPFDSEEAQKLNRD 533
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E + + A S ELA+E+G YSS++GS +GI D + S
Sbjct: 534 VFETLYFAAMETSMELAKEEGPYSSFEGSPISKGIFQFDMWDVTPD-----------SGL 582
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
+W+ LR ++ + G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N
Sbjct: 583 WDWEDLRKKVMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVN 642
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
++L+++L K GLW+++M L +G++ QI IP+DL+ +Y TA+EI II+ + R
Sbjct: 643 KHLLRDLVKIGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAWEIKQKSIIDMSADR 702
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
+I QSQSLNI++++ + KL + AW GLKT YYLR+ +A A K
Sbjct: 703 GAYICQSQSLNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAAADAVK 753
>gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex]
Length = 798
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 291/767 (37%), Positives = 441/767 (57%), Gaps = 61/767 (7%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINK--GIDNKLL---NPK 57
K P Y+ + AR+ + + KE K+ FS+ I+ + NK+ P
Sbjct: 70 KHPDYAILAARIAVSNLHKET--------------KKVFSEVIDDLYNMKNKITKKPTPM 115
Query: 58 LAEFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIA 110
+++F+ + L++A++ +RD FNY G K L Y L I+G +E PQ MR++
Sbjct: 116 ISDFHHGIITKHSDKLNSAIIYDRDFNFNYFGFKTLEKSYLLKIDGKPVERPQHLMMRVS 175
Query: 111 MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIF 169
+G+ + + AI+ YNLLS F ++PTLF + T R QLSSC+L T+ DD + GI+
Sbjct: 176 VGIHGEDID---AAIETYNLLSEKWFTHASPTLFYAATPRPQLSSCFLLTMKDDSIDGIY 232
Query: 170 ESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-K 228
E++K+ A++SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG K
Sbjct: 233 ETLKQCAIISKSAGGIGLNVHCIRATGSYIAGTNGISNGLVPMLRVYNNTARYVDQGGNK 292
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
R GA YLE WH D+ +F++L+KNTG + R D+ A+W+PDLFM+RV W+L
Sbjct: 293 RPGAFAIYLEPWHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWSLMC 352
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P++ P L + +G+EFE Y YE G + +K+ A LW ++ ETG P+I +
Sbjct: 353 PHECPGLADTWGEEFEALYTKYEES---GMYR--RKVKAQQLWFAVIESQIETGTPYILY 407
Query: 349 KDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLK 407
KDACN +S QQ++G I SNLCTEI +S E+ VCNLGSI L + +K K D KLK
Sbjct: 408 KDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKPDKTFDIPKLK 467
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+ ++ R L+ +I+INYY V +AK SN RHRP+G+G+ G D +M+ P+ S+EA
Sbjct: 468 EVTKVLTRNLNKIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEAQLL 527
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
E I Y A AS ELAE+ G Y SY G +GIL D V
Sbjct: 528 NKHIFETIYYGALEASCELAEQLGTYESYPGCPVSKGILQYD------------MWGVTP 575
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
++ +W L+ +I + G+RNS +A PTA+ + I+G + SIE N++++ LSGEF
Sbjct: 576 TDLWDWAALKKKINEHGLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEFQ 635
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
+N +L+++L + GLW+E + + +G++ I IPDDL+ +Y T +EI +I+
Sbjct: 636 VVNHHLLRDLTEGGLWNEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKMA 695
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMG 706
+ R +IDQSQSLNI+I+ + KL + +W GLKT YYLR+ A S +
Sbjct: 696 ADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPA----ASAIQFT 751
Query: 707 IDSVNLDEI-----SIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+D L ++ S N N +E K N++ ++ S + + ++C C
Sbjct: 752 VDKSKLKKMNGVDNSAGATNGNDEE-KRNREAMVCS-LQNRDDCLMC 796
>gi|374596273|ref|ZP_09669277.1| ribonucleoside-diphosphate reductase, alpha subunit [Gillisia
limnaea DSM 15749]
gi|373870912|gb|EHQ02910.1| ribonucleoside-diphosphate reductase, alpha subunit [Gillisia
limnaea DSM 15749]
Length = 813
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 271/642 (42%), Positives = 397/642 (61%), Gaps = 20/642 (3%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N LL + ++ RD ++Y G K L Y L + G E PQ MR+++G+ LN
Sbjct: 121 KVIQENKELLDSTIIYNRDFNYDYFGFKTLERSYLLKLNGEIAERPQHMLMRVSVGIHLN 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ + AI+ Y L+S F +TPTLFN+GT + Q+SSC+L T+ DD + GI++++K+
Sbjct: 181 DI---ESAIETYELMSKKYFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS I GTNG S G++P LKV ND A V+QGG KRKG+
Sbjct: 238 AKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI +F++L+KN G + R D+ A+W+PDLFMKRV + + WTL P + P+
Sbjct: 298 MYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDAKWTLMCPNECPN 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L+N G EF+ Y+ YE++ K G+ K I A LW KIL ETG P++ +KDA N
Sbjct: 358 LYNIHGDEFDALYLKYESEGK-GR----KTIRARELWEKILESQIETGTPYMLYKDAANR 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S QQ++G I SSNLCTEI TS +EI VCNL SI L + +K + D +L K +
Sbjct: 413 KSNQQNLGTIRSSNLCTEIMEFTSPDEIAVCNLASIALPMFIKGKEFDHKELFKITKRVT 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID NYY VK+A+ SN+RHRP+GLG+ G D +++P++S+EA K + E
Sbjct: 473 RNLNRVIDRNYYPVKEAENSNMRHRPIGLGVQGLADTFIKLRMPFTSEEAKKLNQEIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ + A AS ELA+E+G YS++ GS +G Q +L +E E +S +W
Sbjct: 533 LYFAAVTASMELAQEEGPYSTFKGSPISKGQF-QHNLWGVEDEE--------LSGRWDWA 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KLR ++ K G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+
Sbjct: 584 KLRKQVVKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+L + LW + + + +G++ I IP DL+++Y T +E+S II+ R +I
Sbjct: 644 DDLVELNLWTDDVKDAIMRANGSVQDIDVIPQDLKELYKTVWELSMKDIIDMSRHRGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
DQSQSLN+++ N + KL + W GLKT YYLR+ SA
Sbjct: 704 DQSQSLNLFMENANYSKLTSMHFYGWKSGLKTGMYYLRTKSA 745
>gi|325559101|gb|ADZ30477.1| ribonucleotide reductase large subunit protein [Cowpox virus]
Length = 771
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I+A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYERERRYKSI-----INARVIWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFFKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYETYTGSYASNGILQYDLWNIVP------------SDLWNWESLKDKIRSY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|325557813|gb|ADZ29195.1| ribonucleotide reductase large subunit protein [Cowpox virus]
Length = 771
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDI---ESAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L + +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NEE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|311748426|ref|ZP_07722211.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
sp. PR1]
gi|126576939|gb|EAZ81187.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
sp. PR1]
Length = 799
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 286/765 (37%), Positives = 444/765 (58%), Gaps = 56/765 (7%)
Query: 3 KDPVYSQVTARLLMYCIQK---EVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKL- 58
K P Y+ + AR+ + + K + F +K++ I K G + L++P++
Sbjct: 70 KHPDYAILAARIAISNLHKTTSQSFSNTMKRLYTYINPK--------TGGNASLIDPEVY 121
Query: 59 --AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+ N + L + +RD ++Y G K L Y + ++G +E PQ MR+A+G+
Sbjct: 122 GVVKKNAAKLDAIIDYKRDFGYDYFGYKTLERSYLIRLDGKVVERPQHMLMRVAVGIHKE 181
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ + A++ Y+LLS F +TPTLFN+GT + QLSSC+L T+ DD + GI++++K+
Sbjct: 182 DID---AAVETYHLLSEKWFTHATPTLFNAGTPKPQLSSCFLLTMKDDSIDGIYDTLKQC 238
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS IKGTNG S G++P L+ + A V+QGG KRKG+
Sbjct: 239 AKISQSAGGIGLSIHHVRAKGSYIKGTNGVSNGIVPMLRNFDMTARYVDQGGGKRKGSFA 298
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH D+++F++L++N G + R D+ A+W+ DLFMKRV + TW+LF P + P
Sbjct: 299 IYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKRVEQNETWSLFCPNEAPG 358
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G+EFE LYE K G+ + + + A LW +IL ETG P++ +KDA N
Sbjct: 359 LSDCYGEEFER---LYEKYEKEGRAR--ETVKAQELWFEILESQIETGTPYMLYKDAANK 413
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-----LDPIKLKKT 409
+S QQ++G I SSNLCTEI T+ +E+ VCNL S+ L ++ G D KL +
Sbjct: 414 KSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPKFVRTGPDGKLFFDHQKLYEI 473
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++A R L+ VID+NYY V +A+ SN RHRP+GLG+ G D ++++P+ S EA +
Sbjct: 474 TKVATRNLNKVIDVNYYPVDEARRSNFRHRPIGLGVQGLADAFIMLRMPFESAEAKGLNE 533
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
E I Y A S ELA+ +G Y +Y+GS +GIL D + K SE
Sbjct: 534 DIFETIYYAAVETSMELAKVEGTYETYEGSPASKGILQFDMWGVTPK-----------SE 582
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
NW +L+ ++KK G+RNS VA PTA+ S I+G + EP N++ + LSGEF +
Sbjct: 583 RWNWTELKEKVKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRRTLSGEFIVV 642
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N++L+K+L + GLWD++M L +G++ + +P +++ +Y T +EIS II+ +
Sbjct: 643 NKHLMKDLIRLGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKTVWEISQKVIIDLAAD 702
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA-----KKSNF 703
R +I QSQS+N+++ + + KL + AW +GLKT YYLRS +A A KSN
Sbjct: 703 RGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAASAIKFTLDKSNL 762
Query: 704 EMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
E +D +EI + K+ K+ I+ ++D + CE C
Sbjct: 763 EPKVDKAMQEEI----------DAKSLKQDAISCSLDDPDGCEMC 797
>gi|387593978|gb|EIJ89002.1| ribonucleoside-diphosphate reductase large subunit [Nematocida
parisii ERTm3]
Length = 786
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/707 (38%), Positives = 412/707 (58%), Gaps = 40/707 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINK---GID--NKLLNPKLA 59
P YS + R+ +QK P K+ E K N G D ++++ K+
Sbjct: 75 PHYSLLAGRIEASFLQKST----------PSKFSEAMMKLSNSIIYGTDLKTEIISEKIL 124
Query: 60 EF---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+ N L +A+ ERD +F+Y G+K L Y L + IE PQ+ +MR+++G+ N
Sbjct: 125 DIILKNRERLDSAIKDERDFEFSYFGIKTLKRSYLLKSNNVIIERPQYLWMRVSVGIHEN 184
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKEN 175
+ + I+ Y L+S+ +F+ +TPTLFNSGTI QLSSC+L + D + GI+ ++K+
Sbjct: 185 DI---ESVIQTYELMSTKHFIHATPTLFNSGTISPQLSSCFLLAMQSDSIDGIYNTLKQC 241
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A++SK+AGG+G + +R GS IKGT G S G+IP L+V + + V+QGG KR G+I
Sbjct: 242 AVISKHAGGIGVNIHNIRGTGSYIKGTFGHSNGIIPMLRVFDATSKYVDQGGNKRPGSIV 301
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI +F++LRKNTG + R ++ + +WVPDLFMKRV + W LF P
Sbjct: 302 VYIEPWHRDIFDFLDLRKNTGKEEMRARNLFLGLWVPDLFMKRVEEDGDWALFCPNMAKG 361
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH K+G EFEE Y+ YE + ++ K K + A LW+ IL ETG P+I +KD+CN
Sbjct: 362 LHEKYGDEFEELYVQYEKEERVEK----KVVPARKLWKAILEAEIETGVPYILYKDSCNR 417
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G+I SNLC EI T NEI VCNL S+ L +++N + + KLK+ +I
Sbjct: 418 KSNQKNLGVIKGSNLCAEIVEYTDPNEIAVCNLASLALPTYIENNEFNFNKLKEVAKIVA 477
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +ID+N Y +++AK SN++HRP+G+G+ G D ++ P+ SKEA + E
Sbjct: 478 KNLNKIIDVNKYPLEQAKNSNMKHRPIGMGVQGLADVYILLGYPFESKEAAELNKAIFET 537
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A AS ELA++ G Y SY GS +GIL D V S+ +W
Sbjct: 538 IYFGALEASNELAQKYGPYESYAGSPVSKGILQYD------------MWGVQPSDRWDWA 585
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
L+ +I G+RNS VA+ PTA+ S I+G + E N++ + LSGEF +N +LV
Sbjct: 586 GLKKKIAAHGVRNSLLVALMPTASTSQILGFNECFEGFTSNIYTRRTLSGEFQIVNSHLV 645
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K L GLW M + +G++ I IPD ++++Y T +EI +I+ + R ++
Sbjct: 646 KNLADLGLWGPEMKNIIIEHEGSIQNIPSIPDSIKQLYKTVWEIKQKAVIDQAADRGAYV 705
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
DQSQS+NI+IS + +L + W +GLKT TYYLR+ + A K
Sbjct: 706 DQSQSMNIHISTPTFAQLTSMHFYGWKKGLKTGTYYLRTKPSQAAIK 752
>gi|20178449|ref|NP_619870.1| CPXV083 protein [Cowpox virus]
gi|20153067|gb|AAM13528.1|AF482758_79 CPXV083 protein [Cowpox virus]
Length = 771
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 262/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDI---ESAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L + +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ +W+ L+++I+ +
Sbjct: 543 CELAEKEGPYETYTGSYASNGILQYDLWNVVP------------SDLWDWESLKDKIRSY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+E I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NEE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|297797920|ref|XP_002866844.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312680|gb|EFH43103.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 807
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 267/658 (40%), Positives = 388/658 (58%), Gaps = 43/658 (6%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L + ++ +RD +++Y G K L Y L ++G +E PQ MR+++G+ + + AI
Sbjct: 131 LDSEIIYDRDFEYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSVGIHKEDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
K Y+L+S F ++PTLFNSGT R+QLSSC+L + DD + GI++++KE A++SK AGG
Sbjct: 188 KTYHLMSQRWFTHASPTLFNSGTPRAQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA YLE WH D
Sbjct: 248 IGVSIHNIRATGSYIRGTNGASNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +F+ELRKN G + R D+ +W+PDLFM+RV W+LF P + P L + +G EF
Sbjct: 308 IFDFLELRKNHGKEEHRARDLFYGLWIPDLFMERVQTDGQWSLFCPNEAPGLADCWGAEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YENQ K K+ + A LW +IL+ ETG P++ FKD+CN +S QQ++G
Sbjct: 368 ERLYTQYENQGKAKKV-----VQAQQLWYEILTSQVETGTPYMLFKDSCNSKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINL--------------------TLHMKNGKLDP 403
I SSNLCTEI TS E VCNL SI L +L KN D
Sbjct: 423 IKSSNLCTEILEYTSPTETAVCNLASIALPRFVRENDIPLDSHPSKIVGSLDSKNRYFDF 482
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
KL + L+ +ID+N+Y V+ AK SN+RHRP+G+G+ G D ++ +P+ S E
Sbjct: 483 DKLAEVTATVTVNLNKIIDVNHYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPE 542
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
+ + E I Y+A +S+E+A ++G Y +Y GS +GIL D ++ +R
Sbjct: 543 SQQLNKDIFETIYYHALKSSSEIATKEGTYETYQGSPVSKGILQPDMWNVIPSDR----- 597
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
+W LR+ I K G+RNS VA PTA+ S I+G + EP N++ + LS
Sbjct: 598 -------WDWAALRDMISKNGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLS 650
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
GEF +N++L+ +L GLW ++ + + +G++ + IPDDL+ IY T +EI +
Sbjct: 651 GEFVVVNKHLLHDLTDMGLWSPTLKNKIIHENGSIVNVKEIPDDLKAIYRTVWEIKQRTV 710
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
++ + R +IDQSQSLNI++ + KL + AW +GLKT YYLRS SA A K
Sbjct: 711 VDMAADRGCFIDQSQSLNIHMEKPNFAKLTSLHFYAWKKGLKTGMYYLRSRSAADAIK 768
>gi|315639325|ref|ZP_07894487.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
upsaliensis JV21]
gi|315480651|gb|EFU71293.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
upsaliensis JV21]
Length = 789
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 302/751 (40%), Positives = 424/751 (56%), Gaps = 102/751 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G ++ +EYF + +G ++L +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG-----MNRYNHLREYFERGEKEG---RILLGLKEKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERDLQF YLG+K LYDRY + + + IE+PQ FM IAM L+ NE + ++
Sbjct: 123 DLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKAEPIELPQQMFMAIAMFLAQNEFDPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + D++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ D+FMKR+ WTLF P D PDL N +G+ F
Sbjct: 303 INDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLFDPADTPDLCNLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + I A LW+KIL FETG P++ FKD N +P H GI
Sbjct: 363 EKRYEEYEKDDSIVK----EIIDAKELWKKILLNYFETGLPFLCFKDNANRANPNSHTGI 418
Query: 364 IHSSNLCTEITLNTSKN--------EIG-----------------------VCNLGSIN- 391
I SSNLCTEI NT N E G + L SIN
Sbjct: 419 IRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVVIDGGYEKPAKKISTLDSING 478
Query: 392 ----LTLHMKN-GK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
+ KN GK L I L K + IA+RMLDNVID+N+Y K K
Sbjct: 479 QKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRMLDNVIDLNFYPHIKVK 538
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL+ R +GLG+MG L +I + S+E D+ ME + Y A AS+ LA EKG
Sbjct: 539 NTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLSYEAILASSNLAIEKGS 598
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM--SESLNWKKLRNRIKKFGMRNSNC 550
Y + GS W +GI P D + ++ + L+ + S +W +LR ++K GMRN
Sbjct: 599 YPDFKGSKWSEGIFPID---VASEKAKALTLRDGLFAQSSCDWDQLRQKVKNDGMRNGYL 655
Query: 551 VAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIAN 610
+AIAPT++IS ++G + +IEP Y+ + NLSG + + N
Sbjct: 656 MAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV------------------VPN 697
Query: 611 LKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS--NKS 668
L NL + + Y A+E+ +++A +VR KWIDQ QSLNI++S S
Sbjct: 698 L-----NL--------ETWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKAS 744
Query: 669 GKKLDETYKLAWLRGLKTTYYLRSISANYAK 699
G L+E Y LA G+K+TYYLRS S + K
Sbjct: 745 GGYLNEIYTLAHELGVKSTYYLRSESPDSEK 775
>gi|18640305|ref|NP_570461.1| CMLV071 [Camelpox virus]
gi|18482981|gb|AAL73778.1|AF438165_68 ribonucleotide reductase large subunit [Camelpox virus M-96]
Length = 771
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHYD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + + + D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|399925485|ref|ZP_10782843.1| Ribonucleoside-diphosphate reductase, alpha subunit [Myroides
injenensis M09-0166]
Length = 794
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/697 (39%), Positives = 419/697 (60%), Gaps = 30/697 (4%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N L + ++ +RD ++Y G K L Y L + G +E PQ MR+A+G+ L+
Sbjct: 121 KVIKDNAERLDSTIIYQRDFNYDYFGFKTLERSYLLKLNGQIVERPQHMLMRVAVGIHLD 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ + I+ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+
Sbjct: 181 DID---SVIETYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+
Sbjct: 238 ANISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH DI EFIELRKN G + R D+ +A+W+ DLFMKRV WTL P + P
Sbjct: 298 IYLEPWHADIFEFIELRKNHGKEEMRARDLFLALWLNDLFMKRVEADDKWTLMCPNECPG 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G EFE+ YI YEN K G+ + I A LW IL ETG P++ +KDA N
Sbjct: 358 LCDVYGDEFEKLYISYENAGK-GR----RTIKARELWEAILEAQIETGTPYMLYKDAANA 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G+I SSNLCTEI TS +E+ VCNL SI+L + ++NG+ + L +
Sbjct: 413 KSNQKNLGVIRSSNLCTEIMEYTSPDEVAVCNLASISLPMFIENGEFNHQFLYDVTKRIT 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID NYY V++A+ SN++HRPVGLG+ G D ++++P+++ A K E
Sbjct: 473 RNLNRVIDRNYYPVEEARNSNMKHRPVGLGVQGLADAFIMLRLPFTNDAAKKLNKDIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A AS ELA E+G YS+++GS +G + + + E ++ +W
Sbjct: 533 IYFAAVTASMELAIEEGPYSTFEGSPISKGEFQFNLWGINDDELSGRW---------DWN 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+LR ++ + G+RNS +A PTA+ S I+G + + EP N++ + LSGEF +N++L+
Sbjct: 584 ELRRKVIEHGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIIVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L + GLW+E + + +G++ I IP D+R++Y T +E+S II+ R +I
Sbjct: 644 KDLVELGLWNEDLKQEIMRANGSIQHIDYIPADIRELYKTVWELSMKDIIDMAKERGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNF--EMGIDSVN 711
DQSQSLN+++ + KL + AW GLKT YYLR+ SA A K + I +V
Sbjct: 704 DQSQSLNLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNQKKIQNVI 763
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
++EI+ Y ++ K + SE +D +CE C
Sbjct: 764 VEEINQDEYRTMIE------KSRLASENDD--DCEMC 792
>gi|348538826|ref|XP_003456891.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
[Oreochromis niloticus]
Length = 793
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/700 (40%), Positives = 418/700 (59%), Gaps = 32/700 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF ++ + Y +K + I + L+ L
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVMEDL---YNYINPLNKRHSPMISKETLDVVLE 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N + L+++++ +RD +N+ G K L Y L I G E PQ MR+++G+ + +
Sbjct: 127 --NKARLNSSIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKGDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT + Q+SSC+L + DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSEKWFTHASPTLFNAGTNKPQMSSCFLLAMMDDSIDGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGLAVSCIRATGSYIAGTNGTSNGLVPMLRVYNNTARYVDQGGNKRPGAFAVYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH D+ EF+EL+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHFDVFEFLELKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPSECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFEE Y YE + + ++ + A LW I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFEELYTRYEKEGRAKRV-----VKAQQLWYAIIESQTETGTPYMLYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I SSNLCTEI TSK+E+ VCNL SI L +++ K D KL ++ ++
Sbjct: 417 QQNLGTIKSSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPEKTYDFKKLASVTKVIVKN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNIQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA E G Y +Y GS +GIL + E +K ++ +WK L
Sbjct: 537 YAALEASCELAAELGPYETYPGSPVSKGIL--------QYEMWNK----TPTDLWDWKVL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIE N++ + LSGEF +N +L+K+
Sbjct: 585 KEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M L +G++ I IPDDL+++Y T +EIS +++ + R +IDQ
Sbjct: 645 LTERGLWNEDMKNQLIAHNGSIQNIDDIPDDLKQLYKTVWEISQKTVLKMAADRGTYIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLNI+I+ + KL + W GLKT YYLR+ A
Sbjct: 705 SQSLNIHIAEPNYGKLSSMHFYGWKLGLKTGMYYLRTKPA 744
>gi|373447735|gb|AEY73119.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|373449644|gb|AEY75020.1| ribonucleotide reductase large subunit [Vaccinia virus]
Length = 771
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|363582864|ref|ZP_09315674.1| ribonucleoside-diphosphate reductase large chain [Flavobacteriaceae
bacterium HQM9]
Length = 814
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/720 (39%), Positives = 426/720 (59%), Gaps = 38/720 (5%)
Query: 5 PVYSQVTARLLMYCIQK---EVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKL 58
P Y+Q+ AR+ + + K + F + IK + EY + KG I + + K+
Sbjct: 71 PDYAQLAARISVSNLHKNTKKTFSEVIKDL------YEYVNPRTGKGAALIADDVY--KV 122
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N L + ++ RD ++Y G K L Y L I G E PQ MR+++G+ +++
Sbjct: 123 VMENKEKLDSTIIYNRDFSYDYFGFKTLERSYLLKINGNIAERPQHMLMRVSIGIHVDDL 182
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+ A
Sbjct: 183 D---AAIETYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQTAK 239
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+S+ AGG+G +R+ GS I GTNG S G++P L+V ND A V+QGG KRKG+ Y
Sbjct: 240 ISQSAGGIGLSIHNIRATGSYISGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIY 299
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
+E WH DI +F+ELRKN G + R D+ A+W+ DLFMKRV WTL P++ P L+
Sbjct: 300 MEPWHADIFDFLELRKNHGKEEMRARDLFYAMWISDLFMKRVEADEDWTLMCPHECPGLY 359
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +EFE Y YE + K G+ K + A +W K+L ETG P++ +KDA N +S
Sbjct: 360 DVHSEEFESLYTRYEAEGK-GR----KTVKARDVWEKVLESQIETGTPYMLYKDAANRKS 414
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
Q+++G I SSNLCTEI TS +EI VCNL SI L + +K GK D +L K + +
Sbjct: 415 NQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASIALPMFVKGGKFDHDELYKVTKRVTKN 474
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY VK+A+ SN+RHRPVGLGI G D ++++P++S EA K ++ E +
Sbjct: 475 LNKVIDRNYYPVKQAENSNMRHRPVGLGIQGLADTFIMLRMPFTSDEAKKLNEEIFETMY 534
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS ELAE +G Y SY+GS +G + + ++E ++ +W +L
Sbjct: 535 FAAVTASNELAEVEGTYESYEGSPISEGKFQFNLWGIKDEELSGRW---------DWNEL 585
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R +IKK G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+ +
Sbjct: 586 RKKIKKSGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHD 645
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L + G+W++ + + +G++ I +P +L+ +Y T +E+S II+ R +IDQ
Sbjct: 646 LVELGMWNDDLKDAIMRANGSIQNIEGMPQELKDLYKTVWELSMKDIIDMSRHRGYFIDQ 705
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA----NYAKKSNFEMGIDSVN 711
SQSLN+++ + KL + AW GLKT YYLR+ SA + K+N E+ SV+
Sbjct: 706 SQSLNLFMEGATMSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLKTNSEVEKPSVD 765
>gi|373448219|gb|AEY73601.1| ribonucleotide reductase large subunit [Vaccinia virus]
Length = 771
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRRQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y YE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTQYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|1143665|emb|CAA53832.1| unnamed protein product [Variola virus]
gi|5830619|emb|CAB54658.1| L4L protein [Variola minor virus]
Length = 771
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS---AI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLAYAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|19718013|gb|AAG37538.1| CMP70L [Camelpox virus CMS]
Length = 771
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 388/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHYD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + + + D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADTFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>gi|387595820|gb|EIJ93443.1| ribonucleoside-diphosphate reductase large subunit [Nematocida
parisii ERTm1]
Length = 786
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/707 (38%), Positives = 411/707 (58%), Gaps = 40/707 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINK---GID--NKLLNPKLA 59
P YS + R+ +QK P K+ E K N G D ++++ K+
Sbjct: 75 PHYSLLAGRIEASFLQKST----------PSKFSEAMMKLSNSIIYGTDLKTEIISEKIL 124
Query: 60 EF---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
+ N L +A+ ERD +F+Y G+K L Y L + IE PQ+ +MR+++G+ N
Sbjct: 125 DIILKNRERLDSAIKDERDFEFSYFGIKTLKRSYLLKSNNVIIERPQYLWMRVSVGIHEN 184
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKEN 175
+ + I+ Y L+S+ +F+ +TPTLFNSGTI QLSSC+L + D + GI+ ++K+
Sbjct: 185 DI---ESVIQTYELMSTKHFIHATPTLFNSGTISPQLSSCFLLAMQSDSIDGIYNTLKQC 241
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A++SK+AGG+G + +R GS IKGT G S G+IP L+V + + V+QGG KR G+I
Sbjct: 242 AVISKHAGGIGVNIHNIRGTGSYIKGTFGHSNGIIPMLRVFDATSKYVDQGGNKRPGSIV 301
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI +F++LRKNTG + R ++ + +WVPDLFMKRV + W LF P
Sbjct: 302 VYIEPWHRDIFDFLDLRKNTGKEEMRARNLFLGLWVPDLFMKRVEEDGDWALFCPNMAKG 361
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH K+G EFEE Y+ YE + ++ K K + A LW+ IL ETG P+I +KD+CN
Sbjct: 362 LHEKYGDEFEELYVQYEKEERVEK----KVVPARKLWKAILEAEIETGVPYILYKDSCNR 417
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G+I SNLC EI T NEI VCNL S+ L +++N + + KLK+ +I
Sbjct: 418 KSNQKNLGVIKGSNLCAEIVEYTDPNEIAVCNLASLALPTYIENNEFNFNKLKEVAKIVA 477
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +ID+N Y +++AK SN++HRP+G+G+ G D ++ P+ SKEA + E
Sbjct: 478 KNLNKIIDVNKYPLEQAKNSNMKHRPIGMGVQGLADVYILLGYPFESKEAAELNKAIFET 537
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I + A AS ELA++ G Y SY GS +GIL D V S +W
Sbjct: 538 IYFGALEASNELAQKYGPYESYAGSPVSKGILQYD------------MWGVQPSNRWDWA 585
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
L+ +I G+RNS VA+ PTA+ S I+G + E N++ + LSGEF +N +LV
Sbjct: 586 GLKKKIAAHGVRNSLLVALMPTASTSQILGFNECFEGFTSNIYTRRTLSGEFQIVNSHLV 645
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K L GLW M + +G++ I IPD ++++Y T +EI +I+ + R ++
Sbjct: 646 KNLADLGLWGPEMKNIIIEHEGSIQNIPSIPDSIKQLYKTVWEIKQKAVIDQAADRGAYV 705
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
DQSQS+NI+IS + +L + W +GLKT TYYLR+ + A K
Sbjct: 706 DQSQSMNIHISTPTFAQLTSMHFYGWKKGLKTGTYYLRTKPSQAAIK 752
>gi|319953270|ref|YP_004164537.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga
algicola DSM 14237]
gi|319421930|gb|ADV49039.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
algicola DSM 14237]
Length = 825
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/642 (40%), Positives = 390/642 (60%), Gaps = 20/642 (3%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ N + L + ++ RD ++Y G K L Y L I G E PQ MR+++G+ L+
Sbjct: 121 KVISENAAFLDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMRVSVGIHLD 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ + ++ Y L+S F +TPTLFNSGT + Q+SSC+L + DD + GI++++K+
Sbjct: 181 DL---EAVVETYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS I GTNG S G++P L+V ND A V+QGG KRKG+
Sbjct: 238 AQISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI EF++L+KN G + R D+ A+W+PDLFM+RV WTL P + PD
Sbjct: 298 IYVEPWHADIYEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEEWTLMCPNECPD 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + FE Y+ YE + K G+ K + A LW KIL ETG P++ +KDA N
Sbjct: 358 LFKHHSEVFETMYLKYEAENK-GR----KTVKARDLWEKILESQIETGTPYMLYKDAANR 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G I SSNLCTEI TS +E+ VCNL SI L + +KNG+ D +L + +
Sbjct: 413 KSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVT 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ VID NYY VK+A+ SN+RHRP+GLG+ G D ++++P++S A + E
Sbjct: 473 RNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKALNQEIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ + A AS E+A+E+G YSSY+GS +G + + ++E ++ +W
Sbjct: 533 LYFAAVTASMEMAKEEGPYSSYEGSPISEGEFQYNLWGIKDEELSGRW---------DWD 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KLR +KK G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N++L+
Sbjct: 584 KLRKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L GLW+ES+ L +G++ I IP D++++Y T +E+S II+ R +I
Sbjct: 644 EDLVHLGLWNESLKQELMRANGSIQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
DQSQSLN+++ + KL + AW GLKT YYLR+ SA
Sbjct: 704 DQSQSLNLFMEGANFSKLTSMHFYAWKSGLKTGMYYLRTKSA 745
>gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST]
gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST]
Length = 809
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/705 (39%), Positives = 418/705 (59%), Gaps = 50/705 (7%)
Query: 7 YSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINK--GIDNKLL---NPKLAEF 61
Y+ + ARL + + KE K+ FS+ ++ ++N+ L +P +++F
Sbjct: 83 YAILAARLAVSNLHKET--------------KKQFSEVMHDLYMMENEFLKTKSPMISDF 128
Query: 62 -------NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
N L++A++ +RD +NY G K L Y L I+G +E PQ MR+A+G+
Sbjct: 129 HYKVIMDNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHMLMRVAIGIH 188
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
+ + AI+ YNLLS F ++PT+F + T R QLSSC+L T+ +D + GI++++K
Sbjct: 189 GEDID---AAIETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSEDSIEGIYDTLK 245
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
+ AL+SK AGG+G + +R+ G+ I GTNG S G++P L+V N+ A V+QGG KR GA
Sbjct: 246 QCALISKSAGGIGLNVHCIRAKGTYISGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGA 305
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLE WH DI EF++L+KNTG + R DM A+W+PDLFM+RV W+L P+D
Sbjct: 306 FAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMCPHDC 365
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G+EFE+ Y YE + + +++ A LW I+ ETG P++ +KDAC
Sbjct: 366 PGLSDTWGEEFEKLYTGYEKEGRF-----IRQVKAQDLWFAIIESQVETGVPYMLYKDAC 420
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIR 411
N +S QQ++G I SNLCTEI +SK+E+ VCNL SI L + +K K D KLK+ +
Sbjct: 421 NRKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVKQDKTYDFAKLKEVAK 480
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
R L+ +ID+NYY V +AK SN+RHRP+G+G+ G D +M+ PY S+EA K Q
Sbjct: 481 TVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYESEEAQKLNQQI 540
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y A AS ELA G Y +Y+GS +GIL ++ KE ++
Sbjct: 541 FETIYYGALEASCELAARDGPYETYEGSPVSKGIL---QYEMWNKEP---------TDLW 588
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
NW +L+ +I K G+RNS +A PTA+ + I+G + S EP N++ + LSGEF +N
Sbjct: 589 NWAELKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNH 648
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
+L+++L GLWD M + +G++ +I+ IP ++R +Y T +EIS I+ + R
Sbjct: 649 HLLQDLTNMGLWDLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTCIKMAADRG 708
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
+IDQSQS NI+++ + KL + W GLKT YYLR+ A
Sbjct: 709 AFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPA 753
>gi|410915398|ref|XP_003971174.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
isoform 1 [Takifugu rubripes]
Length = 792
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/700 (40%), Positives = 416/700 (59%), Gaps = 32/700 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF ++ + Y +K + I + L+ L
Sbjct: 70 KYPDYAILAARIAVSNLHKETKKVFSDVMEDL---YNYVNPLNKQHSPMISKETLDIVLE 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L G E PQ MR+A+G+ ++++
Sbjct: 127 --NKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKTNGKVAERPQHMLMRVAVGI--HQAD 182
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
E AI+ YNLLS F ++PTLFN+GT + QLSSC+L + +D + GI++++ + AL+
Sbjct: 183 IE-AAIETYNLLSEKWFTHASPTLFNAGTRKPQLSSCFLLAMREDSIEGIYDTLTQCALV 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNGRS G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGLAVSCIRATGSYIAGTNGRSNGLVPMLRVYNNTARYVDQGGNKRPGAFAVYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH D+ F+EL+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 302 EPWHSDVFAFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPSECPGLID 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFEE Y YE + + ++ + A LW I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFEELYTRYEKEGRAKRV-----VKAQQLWYAIIESQTETGTPYMLYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I SSNLCTEI TSK+E+ VCNL SI L +++ + D KL +I +R
Sbjct: 417 QQNLGTIKSSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPQRTYDFNKLASVTKIIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A+ SN+RHRP+G+G+ G D +M+ PY S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEARRSNMRHRPIGIGVQGLADAFILMRHPYESPEAQLLNIQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A AS ELA E G Y +Y GS +G+L D ++ +W L
Sbjct: 537 YAALEASCELAAEFGPYETYAGSPVSKGVLQYD------------MWGKTPTDLWDWNAL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS +A PTA+ + I+G + SIE N++ + LSGEF +N +L+K+
Sbjct: 585 KEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW ++M L +G++ I IPDDL+++Y T +EIS +++ + R +IDQ
Sbjct: 645 LTERGLWSDAMKNQLIAHNGSIQDIQEIPDDLKQLYKTVWEISQKTVLKMAADRGAYIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLNI+I+ + KL + W GLKT YYLR+ A
Sbjct: 705 SQSLNIHIAEPTYGKLTSMHFYGWKLGLKTGMYYLRTKPA 744
>gi|323098671|gb|ADX22908.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
Length = 771
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 261/634 (41%), Positives = 387/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK-RKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG R G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGXXRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFXLLNYPFDSPEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
+LAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEHLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPAS 743
>gi|408491218|ref|YP_006867587.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Psychroflexus torquis ATCC 700755]
gi|408468493|gb|AFU68837.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
[Psychroflexus torquis ATCC 700755]
Length = 815
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/642 (41%), Positives = 394/642 (61%), Gaps = 20/642 (3%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ E + L + ++ RD ++Y G K L Y L + G E PQ MR+++G+
Sbjct: 121 KVIEEHKDELDSRIIYSRDFNYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSLGI--- 177
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ ++ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+
Sbjct: 178 HGEDLESVLETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G +R+ GS I GTNG S G++P L+V ND A V+QGG KRKG+
Sbjct: 238 ARISQSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI F++L+KN G + R D+ A+W+PDLFMKRV + STWTL P + P+
Sbjct: 298 MYVEPWHADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENSTWTLMCPNECPN 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L+N +EF+E Y+ YE + K G+ K I A LW KIL ETG P++ +KDA N
Sbjct: 358 LYNVHSEEFDELYLKYEQENK-GR----KTIKARELWEKILESQIETGTPYMLYKDAANR 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G I SSNLCTEI TS +E+ VCNL SI L + +KNG+ +L K + +
Sbjct: 413 KSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGEFQHKELYKITKQII 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ VID NYY VK+A+ SN RHRPVGLGI G D ++++P++S EA K + E
Sbjct: 473 KNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKKLNQEIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ + A +S ELA+ +G YSS++GS +G + L + + ++ NW
Sbjct: 533 LYFAAVESSMELAKIEGPYSSFEGSPISKGEFQFNLWGLTDNDTSGRW---------NWS 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KLR ++ K G+RNS +A PTA+ S I+G + + EP N++ + LSGEF +N++L+
Sbjct: 584 KLREKVMKHGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L GLWD+ + + +G++ I IPDD++++Y T +E+S II+ R +I
Sbjct: 644 KDLVSLGLWDDDLKDAIMRANGSVQGIDIIPDDIKELYKTVWELSMKDIIDMSRQRGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
DQSQSLN+++ + KL + AW GLKT YYLR+ SA
Sbjct: 704 DQSQSLNLFMEGATFAKLTSMHFYAWKSGLKTGMYYLRTKSA 745
>gi|443684165|gb|ELT88174.1| hypothetical protein CAPTEDRAFT_228855 [Capitella teleta]
Length = 790
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 288/754 (38%), Positives = 441/754 (58%), Gaps = 43/754 (5%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYK-EYFSKFINKGIDNKLLNPKL 58
K P Y+ + AR+ + + KE VF + + + + K + S I+K +LL+ +
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSEVMNDLYTYVNPKNDIHSPMISK----ELLD--I 123
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ +
Sbjct: 124 VTENADRLNSAIIYDRDYSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHGRDL 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENAL 177
+R AI+ YNLLS F ++PTLFN+GT R Q+SSC+L T+ D + GI++++K+ AL
Sbjct: 184 DR---AIETYNLLSEKWFTHASPTLFNAGTNRPQMSSCFLLTMAGDSIEGIYDTLKQCAL 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA Y
Sbjct: 241 ISKSAGGIGLNVHCIRATGSFISGTNGTSNGLLPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+ +F++ RKNTG + +R D+ A+W+PDLFMKRV + W+L P++ P L
Sbjct: 301 LEPWHADVFDFLDCRKNTGKEEQRARDLFYALWIPDLFMKRVEQNGDWSLMCPHESPGLS 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G+EFE LYE K G+++ K I A LW I+ ETG P++ +KD+CN +S
Sbjct: 361 DVWGEEFEA---LYEKYEKEGRVR--KTIKAQQLWYAIIESQTETGTPYMLYKDSCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMR 415
QQ++G I SNLCTEI ++ +E+ VCNL SI L +K+ K D KL + + +R
Sbjct: 416 NQQNLGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNRFVKSDKTFDFDKLIEVTGVIVR 475
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
L+ +ID+N+Y V +A+ SN+RHRP+G+G+ G D +M+ P+ S EA K E I
Sbjct: 476 NLNKIIDVNFYPVPEARKSNMRHRPIGIGVQGLADTFILMRFPFDSPEAQKLNRDIFETI 535
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
Y A S +LA+E+G Y +Y G +GIL D + ++ +W
Sbjct: 536 YYGALKMSCQLAQEEGAYQTYAGCPVSKGILQHDMWDV-------------KADRHDWDG 582
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
LR IKK G+RNS +A PTA+ + I+G + S EP N++ + LSGEF +N +L+K
Sbjct: 583 LRADIKKHGVRNSLLMAPMPTASTAQILGNNESTEPYTSNIYTRRVLSGEFQVVNHHLLK 642
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+L + GLW++ M + +G++ +I IPDDL+ +Y T +EI ++ + R +ID
Sbjct: 643 DLTENGLWNDDMKNRMISSNGSIQEIEGIPDDLKALYKTVWEIKQKVVLNMAAERGAFID 702
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDE 714
QSQSLNI+I+ + +L + AW GLKT YYLR+ A A + +D L +
Sbjct: 703 QSQSLNIHIAEPNYGRLTSMHFYAWKLGLKTGMYYLRTKPAAQA----IQFTVDKSKLKK 758
Query: 715 ISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ G +K +E N ++ S +++ +EC C
Sbjct: 759 KTPTGESKKSEE---NMAAMVCS-LDNKDECIMC 788
>gi|209878422|ref|XP_002140652.1| ribonucleoside-diphosphate reductase, large subunit
[Cryptosporidium muris RN66]
gi|209556258|gb|EEA06303.1| ribonucleoside-diphosphate reductase, large subunit, putative
[Cryptosporidium muris RN66]
Length = 809
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 289/700 (41%), Positives = 416/700 (59%), Gaps = 35/700 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF--- 61
P +S++ AR+ + + K + + I +K+ G LL+ + EF
Sbjct: 75 PDFSKLAARISISNLHKNTHSDIFEVANQLISFKDV------HGNPAPLLSQTVYEFIIE 128
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++ + RD +++Y K L Y L ++ +E PQ MR++ G+ +
Sbjct: 129 NKDRLNSVIDFSRDFEYDYFAFKTLERSYLLRVDDKIVERPQHLLMRVSCGIHYGNID-- 186
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ Y LLS F +TPTLFN+GT+R Q+SSC++ + DD + GIF+++K+ A +SK
Sbjct: 187 -AAIETYELLSQKYFTHATPTLFNAGTLRPQMSSCFILKMSDDSIDGIFDTLKKCANISK 245
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGGLG + +R+ GS I+GTNGRS G+IP L+V ND A V+QGG KRKGA+ YLE
Sbjct: 246 TAGGLGVAISNIRAAGSYIRGTNGRSNGLIPMLRVYNDTARYVDQGGGKRKGALAVYLEP 305
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EFIE+RKN G + R D+ A+W+PDLFM+RV K + WTL P + P + + +
Sbjct: 306 WHADILEFIEIRKNHGKEEMRCRDIFPALWIPDLFMERVEKDANWTLMCPDECPGMQDVW 365
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G +F+E LYE+ K G+ + K I A LW +L ETG P+I +KDA N +S QQ
Sbjct: 366 GDQFKE---LYEHYEKEGRGR--KTIKAQSLWFALLQSQIETGTPFICYKDAANRKSNQQ 420
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRML 417
++G I SSNLCTEI TS +E+ VCNL SI L + +N K D KL + +++A+R L
Sbjct: 421 NLGTIKSSNLCTEIMEYTSSDEVAVCNLASIGLPRFVDRENKKFDFKKLYEVVKVAIRNL 480
Query: 418 DNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICY 477
+ VID YY + + + SNLRHRP+GLG+ G DC I++ PY SK+A K + E I Y
Sbjct: 481 NKVIDRGYYPIPECRRSNLRHRPLGLGVQGLADCFMILRYPYESKDARKLNIEIFETIYY 540
Query: 478 YAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL-NWKKL 536
A AS ELAE+ G Y ++ GS +G+L D V S L NW L
Sbjct: 541 AALDASCELAEKYGPYETFQGSPASRGLLQFD------------LWNVQPSSGLWNWDLL 588
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K+G+RNS VA PTA+ S ++G + S EP N++ + LSGEF +N +L+ +
Sbjct: 589 KEKIAKYGLRNSLLVAPMPTASTSQLLGNNESFEPFTSNIYHRRVLSGEFFVVNPHLLND 648
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L + GLWDE + N+ +G++ I IP D+R +Y T +EI +I+ + R +I Q
Sbjct: 649 LLELGLWDERLKQNIIANNGSVQNIESIPRDIRDLYKTVWEIRQKAVIDMAADRGPYICQ 708
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
SQSLNIYI+N + KL + W +GLKT +YYLR+ SA
Sbjct: 709 SQSLNIYIANANYAKLSSMHFYGWKKGLKTGSYYLRTQSA 748
>gi|356512785|ref|XP_003525096.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
[Glycine max]
gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max]
Length = 809
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/710 (39%), Positives = 403/710 (56%), Gaps = 52/710 (7%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N + L + ++ +RD ++Y G K L Y L ++G +E PQ MR+A+G+ ++ +
Sbjct: 127 NAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDID-- 184
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
A++ Y+++S F ++PTLFN+GT R QLSSC+L + DD + GI++++KE A++SK
Sbjct: 185 -SAVRTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA YLE
Sbjct: 244 SAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EF++LRKN G + R D+ A+WV DLFM+RV W+LF P + P L + +
Sbjct: 304 WHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMERVQSNGQWSLFCPNEAPGLADCW 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE + K K+ + A LW +IL ETG P++ FKD CN +S QQ
Sbjct: 364 GEEFEKLYTQYEREGKAKKV-----VQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQ 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--------------------KNG 399
++G I SSNLCTEI TS E VCNL SI L ++ KN
Sbjct: 419 NLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGSRGSKNR 478
Query: 400 KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPY 459
D KL + I L+ +ID+NYY V A+ SN+RHRP+G+G+ G D ++ + +
Sbjct: 479 YFDFDKLGEVTAIVATNLNKIIDVNYYPVDTARRSNMRHRPIGIGVQGLADTFILLGVAF 538
Query: 460 SSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERG 519
S EA + E I Y+A S+ELA ++G Y +Y GS +GIL D ++ R
Sbjct: 539 DSPEAQQLNKDIFETIYYHALKTSSELAAKEGPYETYSGSPISKGILQPDMWGVMPSSR- 597
Query: 520 SKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIK 579
+W LR I K G+RNS VA PTA+ S I+G + EP N++ +
Sbjct: 598 -----------WDWDALREMIAKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSR 646
Query: 580 SNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEIS 639
LSGEF +N++L+ +L + GLW ++ N+ Y DG++ +I IPDDL+ IY T +EI
Sbjct: 647 RVLSGEFVVVNKHLLHDLTEMGLWSPTIKNNIIYEDGSVQKIPEIPDDLKIIYKTVWEIK 706
Query: 640 PNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
+++ R +IDQSQSLNI++ + KL + AW +GLKT YYLRS +A A
Sbjct: 707 QKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADA 766
Query: 699 KKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
K +D+ L E + +E N K + + + EC +C
Sbjct: 767 IK----FTVDTSMLHEKPMAE-----EEDDNTKMAQMVCSLTNREECLAC 807
>gi|373447499|gb|AEY72884.1| ribonucleotide reductase large subunit [Vaccinia virus]
gi|373449162|gb|AEY74540.1| ribonucleotide reductase large subunit [Vaccinia virus]
Length = 763
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/634 (41%), Positives = 385/634 (60%), Gaps = 32/634 (5%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYD--------------------LWNWEPLKDKIRTY 582
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 583 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 642
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 643 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 701
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 702 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 735
>gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti]
gi|108873131|gb|EAT37356.1| AAEL010644-PA [Aedes aegypti]
Length = 844
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/705 (40%), Positives = 417/705 (59%), Gaps = 50/705 (7%)
Query: 7 YSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINK--GIDNKLL---NPKLAEF 61
Y+ + ARL + + KE K++FS ++ ++N+ L P ++EF
Sbjct: 81 YAILAARLAVSNLHKET--------------KKHFSDVMHDLYMMENEHLKKRTPMISEF 126
Query: 62 NLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ + L++A++ +RD +NY G K L Y L I+G +E PQ MR+A+G+
Sbjct: 127 HYKVIMDHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHMLMRVAIGIH 186
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
+ + AI+ YNLLS F ++PT+F + T R QLSSC+L T+ DD + GI++++K
Sbjct: 187 GEDID---AAIETYNLLSERYFTHASPTMFAAATCRPQLSSCFLLTMSDDSIEGIYDTLK 243
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
+ AL+SK AGG+G + +R+ G+ I GTNG S G+IP L+V N+ A V+QGG KR GA
Sbjct: 244 QCALISKSAGGIGLNVHCIRAKGTYIAGTNGISNGLIPMLRVYNNTAKYVDQGGNKRPGA 303
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YLE WH D+ EF++L+KNTG + R DM A+W+PDLFMKRV W L P++
Sbjct: 304 FAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANEDWCLMCPHEC 363
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G+EFE+ Y YE + + +K+ A LW I+ ETG P++ +KDAC
Sbjct: 364 PGLSDTWGEEFEKLYTSYEAEGRY-----IRKVKAQDLWFAIIESQVETGVPYMLYKDAC 418
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIR 411
N +S QQ++G I SNLCTEI +SK+EI VCNL SI L + +K K D KLK+ +
Sbjct: 419 NRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDKTYDFQKLKEVAK 478
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
IA + L+ +IDIN+Y V +AK SN+RHRP+G+G+ G D +M+ PY S+EA K Q
Sbjct: 479 IATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSEEAQKLNQQI 538
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y A AS ELAE++G Y +Y G +G+L D + KE ++
Sbjct: 539 FETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYD---MWNKEP---------TDMW 586
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
+W L+ +I K G+RNS +A PTA+ + I+G + S EP N++ + LSGEF +N
Sbjct: 587 DWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQIVNH 646
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
+L+K+L + LWD+ M + +G++ I IP +R +Y T +EIS I+ + R
Sbjct: 647 HLLKDLTELDLWDDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCIKMAADRG 706
Query: 652 KWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
+IDQSQS NI+++ + KL + W GLKT YYLR+ A
Sbjct: 707 AFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPA 751
>gi|150024560|ref|YP_001295386.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
psychrophilum JIP02/86]
gi|149771101|emb|CAL42568.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
psychrophilum JIP02/86]
Length = 806
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/700 (39%), Positives = 419/700 (59%), Gaps = 34/700 (4%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N + L++ ++ RD ++Y G K L Y L I G +E PQ MR+++G+ LN+
Sbjct: 126 NAAFLNSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLNDL--- 182
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
K I+ Y+L+S F +TPTLFN+GT + Q+SSC+L + DD + GI++++K+ A +S+
Sbjct: 183 KSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQ 242
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G VR+ GS I+GTNG S G++P L+V ND A V+QGG KRKG+ Y+ET
Sbjct: 243 SAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYIET 302
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI EF++L+KNTG + R D+ A+W DLFMKRV + WTL P + P L++ +
Sbjct: 303 WHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGDWTLMCPNECPGLYDVY 362
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE K GK + K I A LW KIL ETG P++ +KDA N +S Q+
Sbjct: 363 GEEFEKMYTNYE---KAGKGR--KTIKAHELWEKILESQIETGTPYMLYKDAANRKSNQK 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
++G I SSNLCTEI TSK+EI VCNL S++L + ++NG + L + R L+
Sbjct: 418 NLGTIRSSNLCTEIMEYTSKDEIAVCNLASLSLPMFIENGTFNHDLLFTVTKRVTRNLNK 477
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID NYY VK+ + SN RHRP+GLG+ G D ++++P++S +A K + E + + A
Sbjct: 478 VIDRNYYPVKEGENSNKRHRPIGLGVQGLADAFIMLRLPFTSDQAKKLNQEIFETLYFAA 537
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS E+A E+G YS++ GS QG + L ++E ++ +W LR
Sbjct: 538 VTASMEMAIEEGPYSTFAGSPISQGEFQYNLWGLKDEELSGRW---------DWANLRKE 588
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+ K G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+ +L +
Sbjct: 589 VMKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLNDLVE 648
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
+GLW E + L +G++ +++ IP DL+++Y T +E+S II+ R ++DQSQS
Sbjct: 649 RGLWTEDLKQQLMRENGSVQKLN-IPQDLKELYKTVWEMSMKDIIDMSRQRGYFVDQSQS 707
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
LN+++ + + KL + AW GLKT YYLR+ +A A K F + D + I+I+
Sbjct: 708 LNLFMQDANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIK--FTLNNDK-KAEPITIE 764
Query: 719 -GYNKNLQEIKNNKKCLINSEINDV---------NECESC 748
L E++ K + N E + + +CE C
Sbjct: 765 VKQQTTLTEVEPQTKTMTNEEYSAMIQLAKNATPEDCEMC 804
>gi|296421726|ref|XP_002840415.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636631|emb|CAZ84606.1| unnamed protein product [Tuber melanosporum]
Length = 884
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/679 (40%), Positives = 404/679 (59%), Gaps = 36/679 (5%)
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
S L +A++ ++D +NY G K L Y L I G E PQ MR+A+G+ + ++
Sbjct: 129 SELDSAIIYDKDFNYNYFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGEDVDK--- 185
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENALLSKYA 182
I+ YNL SS F ++PTLFN+GT QLSSC+L T+ D + GI++++K A++SK A
Sbjct: 186 VIETYNLTSSKYFTHASPTLFNAGTPSPQLSSCFLVTMKGDSIDGIYDTLKTCAMISKTA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ GS I GTNG S G++P L+V N A V+QGG KR GA Y+E WH
Sbjct: 246 GGIGLNIHCIRATGSYIAGTNGSSNGIVPMLRVFNHTARYVDQGGNKRPGAFAIYMEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
DI +FI+LRKN G + R D+ A+W+PDLFMKRV + W+LF P + P L + +G+
Sbjct: 306 ADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANAEWSLFCPNEAPGLADVWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE Y YEN L + K I A LW IL ETG+P++ +KDACN +S QQ++
Sbjct: 366 EFEALYNKYENTKDLAR----KTIKAQKLWYHILEAQTETGNPFMLYKDACNRKSNQQNL 421
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH--MKNGKLDPIKLKKTIRIAMRMLDN 419
G I SSNLCTEI ++ +E+ VCNL S+ L + ++ G+ D KL + ++ ++ L+
Sbjct: 422 GTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDVQRGEYDFAKLHEVTKVVIKNLNK 481
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+ID+N+Y V +A+ SN RHRPVG+G+ G D +++P+ S +A + Q E I + A
Sbjct: 482 IIDVNFYPVPEARKSNTRHRPVGVGVQGLADAFLALRMPFESPQAKQLNIQIFETIYHAA 541
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
ASTELAE +G Y +Y+GS +G L D V +E +W +L+ +
Sbjct: 542 VEASTELAEIQGPYPTYEGSPASKGQLQYD------------LWNVTPTELWDWDELKEK 589
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+KK G+RNS VA PTA+ S I+G + EP N++ + L+GEF +N +L+K+L
Sbjct: 590 VKKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVD 649
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLW ++M + +G++ I IPDD++ +Y T +EIS +IE V +IDQSQS
Sbjct: 650 MGLWSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWEISQKKVIE---VCGAFIDQSQS 706
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
LNI+I N + KL + W GLKT YYLR+ +A A + +D+ ++K
Sbjct: 707 LNIHIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAAAAIQ---------FTVDQEALK 757
Query: 719 GYNKNLQEIKNNKKCLINS 737
+ N+ NKK L N+
Sbjct: 758 VADTNVARALPNKKRLPNT 776
>gi|298207003|ref|YP_003715182.1| ribonucleoside-diphosphate reductase large chain [Croceibacter
atlanticus HTCC2559]
gi|83849637|gb|EAP87505.1| probable ribonucleoside-diphosphate reductase large chain
[Croceibacter atlanticus HTCC2559]
Length = 840
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 268/651 (41%), Positives = 397/651 (60%), Gaps = 20/651 (3%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + N L + ++ RD ++Y G K L Y L + G E PQ MR+++G+ L+
Sbjct: 121 KVIQDNKDRLDSTIIYNRDYGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSVGIHLD 180
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ + AI+ Y L+S F +TPTLFNSGT + Q+SSC+L T+ DD + GI++++K+
Sbjct: 181 DLD---AAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQT 237
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
A +S+ AGG+G VR+ GS I GTNG S G++P L+V ND A V+QGG KRKG+
Sbjct: 238 AKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLQVYNDTARYVDQGGGKRKGSFA 297
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI +F++L+KN G + R D+ A+W+PDLFMKRV + WTL P + P+
Sbjct: 298 IYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGNWTLMCPNECPN 357
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L N +EF+E Y+ YE++ K G+ K I A LW KIL ETG P++ +KDA N
Sbjct: 358 LFNVHSEEFDELYLKYESENK-GR----KTIKARVLWEKILESQIETGTPYMLYKDAANR 412
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
+S Q+++G I SSNLCTEI TS +E+ VCNL SI L + +KNG D +L + +
Sbjct: 413 KSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGAFDHKELFRITKRVT 472
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ VID NYY VK+A+ SN RHRPVGLGI G D ++++P++S EA + E
Sbjct: 473 KNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKTLNQEIFET 532
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ + A AS ELA E+G YSSY+GS +G + + ++E ++ +W
Sbjct: 533 LYFAAVTASMELAIEEGPYSSYEGSPISKGEFQYNLWGIKDEELSGRW---------DWA 583
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ + G+RNS VA PTA+ S I+G + + EP N++ + LSGEF +N++L+
Sbjct: 584 GLRQKVLENGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLL 643
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L GLW+ + + +G++ I IP DL+++Y T +E+S II+ R +I
Sbjct: 644 EDLVNLGLWNNDLKNAIMRANGSIQNIDGIPQDLKELYKTVYELSMKDIIDMSRHRGYFI 703
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFE 704
DQSQSLN+++ N + KL + AW GLKT YYLR+ +A A K E
Sbjct: 704 DQSQSLNLFMENANYAKLTSMHFYAWKNGLKTGMYYLRTKAAVDAIKFTVE 754
>gi|254580061|ref|XP_002496016.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
gi|238938907|emb|CAR27083.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
Length = 921
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 287/710 (40%), Positives = 421/710 (59%), Gaps = 45/710 (6%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE--FN 62
P Y+ + AR+ + + K+ K+ Q+ + + ++N N + +P +++ FN
Sbjct: 72 PDYATLAARIAVSNLHKQT-TKQFSQVISDLYH------YVNPA--NGVHSPMISDEIFN 122
Query: 63 LSL-----LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
+ + L++A++ +RD QFNY G K L Y L I G+ E PQ MR+++G+ +
Sbjct: 123 IVMTNKDELNSAIVYDRDFQFNYFGFKTLERSYLLRINGLTAERPQHLIMRVSLGIHGED 182
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
K AI+ YNL+S F+ ++PTLFN+GT Q++SC+L + DD + GI++S+KE A
Sbjct: 183 I---KSAIETYNLMSLRYFIHASPTLFNAGTPHPQMASCFLVAMKDDSIEGIYDSLKECA 239
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G +RS GS I GTNG S G+IP ++V N+ A V+QGG KR GA
Sbjct: 240 MISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGNKRPGAFAL 299
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI +FI++RKN G + R D+ A+W+PDLFMKRV K WTLFSP + P L
Sbjct: 300 YLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNEEWTLFSPSEAPGL 359
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE+ Y YE + + G+ K I A LW IL ETG P++ +KDACN +
Sbjct: 360 ADVYGEEFEKLYERYEQEGR-GR----KTIRAQKLWYAILEAQTETGTPFMLYKDACNEK 414
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGK---LDPIKLKKT 409
S Q+++G+I SSNLC EI + K+E CNL SI L ++ +GK KL +
Sbjct: 415 SNQKNLGVIKSSNLCCEIVEYSDKDETAACNLASIALPSCVEVSADGKEQWYSFAKLHEV 474
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
+ R L+ VID NYY V +AK SN+RHRP+ LG+ G D ++++P+ S EA
Sbjct: 475 AKAITRNLNKVIDRNYYPVPEAKRSNMRHRPIALGVNGLADTFMMLRLPFESPEAKILNQ 534
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I + A S ELA+ G YS+Y+GS QG+L D L EK N SE
Sbjct: 535 QIFETIYHGALEQSCELAKIHGTYSTYEGSPISQGLLQFD---LWEK---------NPSE 582
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+W+ LR IK+ G+RNS VA PTA+ S I+G + EP N++ + LSGEF +
Sbjct: 583 LWDWEPLRQGIKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIV 642
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N YL+K+L G+WDESM + +G++ I IP +++ +Y T +EIS +++ +
Sbjct: 643 NPYLLKDLVDLGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWEISQRHVLDMAAD 702
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
R +IDQS SLNI++ + KL + W +GLKT YYLR+ +A+ A
Sbjct: 703 RAVFIDQSHSLNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAA 752
>gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata]
Length = 810
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/725 (38%), Positives = 413/725 (56%), Gaps = 57/725 (7%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+++ + K F + IK + Y + + G + L+ + E
Sbjct: 72 PDYASLAARIVVSNLHKNTKKSFSETIK-----LMYHHFNER---SGQEAPLIADDVYEI 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + L + ++ +RD ++Y G K L Y L + G+ +E PQ MR+A+G+ ++
Sbjct: 124 IMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVSGMVVERPQHMLMRVAVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
K I+ Y+L+S F ++PTLFN+GT R QLSSC+L + +D + GI++++KE A+
Sbjct: 184 ---KSVIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKEDSIEGIYDTLKECAI 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+ EF+ELRKN G + R D+ A+W+PDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADMYEFLELRKNHGKEEHRARDLFYALWIPDLFMERVQSNGQWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE+ Y+ YE++ K K+ ++A LW +IL ETG P++ FKD CN +S
Sbjct: 361 DCWGDEFEKLYLKYEDEGKAKKV-----VAAQNLWFEILKSQIETGTPYMLFKDTCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-------------------- 396
QQ++G I SSNLCTEI TS E VCNL SI L +
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSRLVGSSGS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + I L+ +ID+NYY V+ A+ SNLRHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFDKLGEVTAIITENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I Y+A +S+E+A G Y +Y GS +GIL D
Sbjct: 536 MPFDSPEAQQLNKDIFETIYYHALKSSSEIAISSGPYETYQGSPVSKGILQPD------- 588
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
V +S+ +W LR I K G+RNS +A PTA+ S I+G + EP N+
Sbjct: 589 -----MWNVTLSDRWDWAALREMISKNGVRNSLLIAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L + GLW ++ + Y DG++ +I IPD+L+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVLKIPEIPDNLKAIYKTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ R +IDQSQSLNI++ + KL + AW +GLKT YYLRS +A
Sbjct: 704 EIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAA 763
Query: 696 NYAKK 700
A K
Sbjct: 764 ADAIK 768
>gi|221125331|ref|XP_002156185.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
isoform 1 [Hydra magnipapillata]
Length = 821
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 295/769 (38%), Positives = 438/769 (56%), Gaps = 59/769 (7%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF- 61
K P Y+ + AR+ + + KE + K D Y S IN ++ +++ ++ +
Sbjct: 87 KHPDYALLAARIAISNLHKET---KKKFSDTIADLYNYISPEIN--MNCPMVSEEVYQIV 141
Query: 62 --NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L A++ RD +++Y G K L Y L I G E PQ MR+++G+ + +
Sbjct: 142 QKNKERLDGAIISSRDFEYHYFGFKTLERSYLLKINGKTAERPQHMLMRVSVGIHGEDLD 201
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKENALL 178
AI+ YNL+S F ++PTLFNSGT R Q+SSC+L + D + GIF+++K+ A++
Sbjct: 202 ---AAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMQSDSIEGIFDTVKQCAII 258
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK+AGG+G +RS GS I GTNG S G+IP L+V N+ A V+QGG KR G+I YL
Sbjct: 259 SKWAGGIGLHIHCIRSSGSYIAGTNGHSNGIIPMLRVFNNTARYVDQGGNKRPGSIAIYL 318
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DI +F++L+KNTG + +R D+ +WVPDLFM+RV +K W+L P++ P L +
Sbjct: 319 EPWHADIIDFLDLKKNTGKEEQRARDLFFGLWVPDLFMRRVEEKGMWSLMCPHECPGLAD 378
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFEE Y YE++ G+ + K+I A LW IL ETG P++ +KD+CN +S
Sbjct: 379 CYGEEFEELYQKYESE---GRYR--KQIPAQKLWFAILESQTETGTPYMLYKDSCNRKSN 433
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL-----------------TLHMKNGK 400
Q+++G + SNLCTEI TS +EI VCNL SI++ T +K G
Sbjct: 434 QKNLGTLKCSNLCTEILEYTSSDEIAVCNLASISVNSFVTVNSETVTLPSGETKLVKTGV 493
Query: 401 LDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYS 460
D KLK ++ R L+ VID N+Y V +A+ SN+RHRP+G+G+ G D +M+ P+
Sbjct: 494 YDFKKLKYVTKVITRNLNKVIDRNFYPVPEARNSNMRHRPIGIGVQGLADAFILMRFPFE 553
Query: 461 SKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGS 520
S EA Q E I Y A AS ELAE+ G Y SY GS +GIL D
Sbjct: 554 SDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQGSPISKGILQYD----------- 602
Query: 521 KYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKS 580
V + NW +L+ +I G+RNS VA PTA+ + I+G + SIEP N++ +
Sbjct: 603 -MWNVTPTNLWNWAELKAKIALHGVRNSLLVAPMPTASTAQILGNNESIEPYTNNIYSRR 661
Query: 581 NLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISP 640
LSGEF +N++L+K+L LWD++M L +G++ I IP D++ +Y TA+EI
Sbjct: 662 VLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEIPADIKVLYKTAWEIKQ 721
Query: 641 NWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAK 699
+I + R +IDQSQS N+++ S L + W +GLKT YYLR+ A A
Sbjct: 722 KSLINMAADRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGLKTGMYYLRTKPAANAI 781
Query: 700 KSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ +D+ +K N NL++ ++ K LI S + + ++C SC
Sbjct: 782 Q---------FTVDQNKLKQSN-NLKQTDDDLKSLICS-LENKDQCMSC 819
>gi|323098474|gb|ADX22712.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
Length = 771
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 261/634 (41%), Positives = 387/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK-RKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG R G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGXXRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
+LAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEHLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPAS 743
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,596,888,019
Number of Sequences: 23463169
Number of extensions: 493245779
Number of successful extensions: 1187516
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6095
Number of HSP's successfully gapped in prelim test: 583
Number of HSP's that attempted gapping in prelim test: 1148096
Number of HSP's gapped (non-prelim): 11861
length of query: 749
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 599
effective length of database: 8,839,720,017
effective search space: 5294992290183
effective search space used: 5294992290183
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)