BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8865
(749 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 503 bits (1294), Expect = e-142, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/635 (42%), Positives = 395/635 (62%), Gaps = 24/635 (3%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 54 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID-- 111
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 112 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 170
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 171 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 230
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 231 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 290
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD+CN +S QQ
Sbjct: 291 GEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 345
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+
Sbjct: 346 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 405
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 406 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 465
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538
A AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+
Sbjct: 466 ALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTDLWDWKVLKE 513
Query: 539 RIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L
Sbjct: 514 KIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLT 573
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
++GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQ
Sbjct: 574 ERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQ 633
Query: 659 SLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRS 692
SLNI+I+ + KL + W +GLKT YYLR+
Sbjct: 634 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRT 668
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 477 bits (1227), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/737 (38%), Positives = 419/737 (56%), Gaps = 41/737 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P Y+ + AR+ + + K+ + K ++ +Y + I + + N + N
Sbjct: 72 PDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYN--IVMENKD 129
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCA 124
L++A++ +RD Q++Y G K L Y L I G E PQ MR+A+G+ + + A
Sbjct: 130 KLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDI---EAA 186
Query: 125 IKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAG 183
++ YNL+S F ++PTLFN+GT + Q+SSC+L + +D + GI++++KE AL+SK AG
Sbjct: 187 LETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHM 242
G+G +RS GS I GTNG S G+IP ++V N+ A V+QGG KR GA YLE WH
Sbjct: 247 GIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHA 306
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +FI++RKN G + R D+ A+W+PDLFMKRV + TWTLFSP P L + +G E
Sbjct: 307 DIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDE 366
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE Y YE + + K I A LW IL ETG P++ +KDACN +S Q+++G
Sbjct: 367 FEALYTRYEKEGR------GKTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLG 420
Query: 363 IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGKLDPIKLKKTIRIA---MRM 416
+I SSNLC EI ++ +E VCNL S+ L ++ +GK KK IA R
Sbjct: 421 VIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRN 480
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY V++A+ SN+RHRP+ LG+ G D ++++P+ S+EA Q E I
Sbjct: 481 LNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIY 540
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ + AS ELA++ G Y ++ GS QGIL D +K G +W L
Sbjct: 541 HASMEASCELAQKDGPYETFQGSPASQGILQFDMWD--QKPYGM----------WDWDTL 588
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R I K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N YL+++
Sbjct: 589 RKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRD 648
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L G+WDE M L +G++ + +P +L+ +Y T +EIS II + R +IDQ
Sbjct: 649 LVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQ 708
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
S SLN+++ + KL + W +GLKT YYLR+ +A+ A + ID D+
Sbjct: 709 SHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAA----IQFTIDQKIADQA 764
Query: 716 SIKGYNKNLQEIKNNKK 732
+ +N+ +I N K+
Sbjct: 765 T-----ENVADISNLKR 776
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/737 (37%), Positives = 418/737 (56%), Gaps = 41/737 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P Y+ + AR+ + + K+ + K ++ +Y + I + + N + N
Sbjct: 72 PDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYN--IVMENKD 129
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCA 124
L++A++ +RD Q++Y G K L Y L I G E PQ MR+A+G+ + + A
Sbjct: 130 KLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDI---EAA 186
Query: 125 IKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAG 183
++ YNL+S F ++PTLFN+GT + Q+SSC+L + +D + GI++++KE AL+SK AG
Sbjct: 187 LETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHM 242
G+G +RS GS I GTNG S G+IP ++V N+ A V+ GG KR GA YLE WH
Sbjct: 247 GIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDAGGNKRPGAFALYLEPWHA 306
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +FI++RKN G + R D+ A+W+PDLFMKRV + TWTLFSP P L + +G E
Sbjct: 307 DIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDE 366
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE Y YE + + K I A LW IL ETG P++ +KDACN +S Q+++G
Sbjct: 367 FEALYTRYEKEGR------GKTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLG 420
Query: 363 IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGKLDPIKLKKTIRIA---MRM 416
+I SSNLC EI ++ +E VCNL S+ L ++ +GK KK IA R
Sbjct: 421 VIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRN 480
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY V++A+ SN+RHRP+ LG+ G D ++++P+ S+EA Q E I
Sbjct: 481 LNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIY 540
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ + AS ELA++ G Y ++ GS QGIL D +K G +W L
Sbjct: 541 HASMEASCELAQKDGPYETFQGSPASQGILQFDMWD--QKPYGM----------WDWDTL 588
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R I K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N YL+++
Sbjct: 589 RKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRD 648
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L G+WDE M L +G++ + +P +L+ +Y T +EIS II + R +IDQ
Sbjct: 649 LVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQ 708
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
S SLN+++ + KL + W +GLKT YYLR+ +A+ A + ID D+
Sbjct: 709 SHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAA----IQFTIDQKIADQA 764
Query: 716 SIKGYNKNLQEIKNNKK 732
+ +N+ +I N K+
Sbjct: 765 T-----ENVADISNLKR 776
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/737 (37%), Positives = 418/737 (56%), Gaps = 41/737 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P Y+ + AR+ + + K+ + K ++ +Y + I + + N + N
Sbjct: 72 PDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYN--IVMENKD 129
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCA 124
L++A++ +RD Q++Y G K L Y L I G E PQ MR+A+G+ + + A
Sbjct: 130 KLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDI---EAA 186
Query: 125 IKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAG 183
++ YNL+S F ++PTLFN+GT + Q+SSC+L + +D + GI++++KE AL+SK AG
Sbjct: 187 LETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHM 242
G+G +RS GS I GTNG S G+IP ++V N+ A V+QGG K GA YLE WH
Sbjct: 247 GIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKAPGAFALYLEPWHA 306
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +FI++RKN G + R D+ A+W+PDLFMKRV + TWTLFSP P L + +G E
Sbjct: 307 DIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDE 366
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE Y YE + + K I A LW IL ETG P++ +KDACN +S Q+++G
Sbjct: 367 FEALYTRYEKEGR------GKTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLG 420
Query: 363 IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGKLDPIKLKKTIRIA---MRM 416
+I SSNLC EI ++ +E VCNL S+ L ++ +GK KK IA R
Sbjct: 421 VIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRN 480
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY V++A+ SN+RHRP+ LG+ G D ++++P+ S+EA Q E I
Sbjct: 481 LNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIY 540
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ + AS ELA++ G Y ++ GS QGIL D +K G +W L
Sbjct: 541 HASMEASCELAQKDGPYETFQGSPASQGILQFDMWD--QKPYGM----------WDWDTL 588
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R I K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N YL+++
Sbjct: 589 RKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRD 648
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L G+WDE M L +G++ + +P +L+ +Y T +EIS II + R +IDQ
Sbjct: 649 LVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQ 708
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
S SLN+++ + KL + W +GLKT YYLR+ +A+ A + ID D+
Sbjct: 709 SHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAA----IQFTIDQKIADQA 764
Query: 716 SIKGYNKNLQEIKNNKK 732
+ +N+ +I N K+
Sbjct: 765 T-----ENVADISNLKR 776
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 245 bits (625), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 211/733 (28%), Positives = 332/733 (45%), Gaps = 93/733 (12%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL +LD +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELDEL 481
Query: 405 KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEA 464
+ +A+R LD ++D Y + AK + R +G+G++ F L YS A
Sbjct: 482 AI-----LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSA 536
Query: 465 IKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLK 524
++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 537 NNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDLD 588
Query: 525 VNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNL 582
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 589 TIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASK 648
Query: 583 SGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEISP 640
DG L Q+ +PD L Y +E+
Sbjct: 649 --------------------------------DGILRQV--VPDYEHLHDAYELLWEMPG 674
Query: 641 N-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYYLRS 692
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY ++
Sbjct: 675 NDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY-QN 733
Query: 693 ISANYAKKSNFEM 705
+ SNF++
Sbjct: 734 TRDDIDDLSNFQL 746
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
Length = 761
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 208/718 (28%), Positives = 327/718 (45%), Gaps = 94/718 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSASQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEIS 639
DG L Q+ +PD L Y +E+
Sbjct: 648 K--------------------------------DGILRQV--VPDYEHLHDAYELLWEMP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY 731
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 761
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 208/718 (28%), Positives = 327/718 (45%), Gaps = 94/718 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEIS 639
DG L Q+ +PD L Y +E+
Sbjct: 648 K--------------------------------DGILRQV--VPDYEHLHDAYELLWEMP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY 731
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
Length = 761
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 287/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 287/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 287/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 207/718 (28%), Positives = 327/718 (45%), Gaps = 94/718 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC +I L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEIS 639
DG L Q+ +PD L Y +E+
Sbjct: 648 K--------------------------------DGILRQV--VPDYEHLHDAYELLWEMP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY 731
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
Length = 761
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 287/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
Length = 761
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 287/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
Length = 761
Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 287/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 207/718 (28%), Positives = 327/718 (45%), Gaps = 94/718 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC +I L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEIS 639
DG L Q+ +PD L Y +E+
Sbjct: 648 K--------------------------------DGILRQV--VPDYEHLHDAYELLWEMP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY 731
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 241 bits (616), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 207/718 (28%), Positives = 326/718 (45%), Gaps = 94/718 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC I L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEIS 639
DG L Q+ +PD L Y +E+
Sbjct: 648 K--------------------------------DGILRQV--VPDYEHLHDAYELLWEMP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY 731
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
Length = 761
Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 179/608 (29%), Positives = 286/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNL EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
Length = 761
Score = 238 bits (608), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 179/608 (29%), Positives = 286/608 (47%), Gaps = 50/608 (8%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNL EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILRQV 655
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 173/595 (29%), Positives = 292/595 (49%), Gaps = 87/595 (14%)
Query: 127 FYNLLSSFNFMCSTPTLFNSG----------------------TIRSQ-----LSSCYLS 159
F+ +L + F+ ++PTLFN+G RS+ LS+C++
Sbjct: 78 FFRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVV 137
Query: 160 TVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDV 219
V D + IFE++KE AL++K GG+G++++++R GS + GT+G++ G + F+ V N
Sbjct: 138 PVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 220 AVAVNQGGKRKGAICAYLETWHMDIEEFIELRK-NTGDDRRRTHDMNIAIWVPDLFMKRV 278
V QG +R+GA+ L H DIEEFI+ +K NTG+ + N+++ P + K +
Sbjct: 198 ISVVKQGSRRRGALMGILNINHPDIEEFIDAKKENTGE--AVLNFFNLSVGFP-MDKKEI 254
Query: 279 IKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSML 338
+K L+ + G E E S+ + + KK+ L+RKI +
Sbjct: 255 LK--------------LYEEDG-ELELSH---------PRSTIRKKVKIRELFRKIATNA 290
Query: 339 FETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN 398
+++G P + F N P I+S+N C EI L+ + CNLGSI++ N
Sbjct: 291 WKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLSDYE----ACNLGSIDVAKFYNN 346
Query: 399 GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458
G +D L++ ++IA+R LDNVID+N + + K + R +GLGIMGF D L+ ++IP
Sbjct: 347 GFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIP 406
Query: 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518
Y+S+EA FA M I +A+ S EL +EKG + LLE R
Sbjct: 407 YNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFP------------------LLEISR 448
Query: 519 ---GSKYLKVNMSESLNWKKLRNRIK--KFGMRNSNCVAIAPTATISNIIGVSASIEPTY 573
++ M S ++R +K K RN + IAPT +ISNI S+ +EP +
Sbjct: 449 YRTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNF 508
Query: 574 RNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM--IANLKYFDGNLSQISRIPDDLRKI 631
+ + + T+ V ++ ++ L E + I G+L I +P+ ++K+
Sbjct: 509 LLAYTRFVTKDDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKV 568
Query: 632 YATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT 686
+ A +I P + Q+++D + S I + + +D+ + +L L+T
Sbjct: 569 FVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSA--TVDDVLNV-YLEALRT 620
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 173/595 (29%), Positives = 292/595 (49%), Gaps = 87/595 (14%)
Query: 127 FYNLLSSFNFMCSTPTLFNSG----------------------TIRSQ-----LSSCYLS 159
F+ +L + F+ ++PTLFN+G RS+ LS+C++
Sbjct: 78 FFRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVV 137
Query: 160 TVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDV 219
V D + IFE++KE AL++K GG+G++++++R GS + GT+G++ G + F+ V N
Sbjct: 138 PVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 220 AVAVNQGGKRKGAICAYLETWHMDIEEFIELRK-NTGDDRRRTHDMNIAIWVPDLFMKRV 278
V QG +R+GA+ L H DIEEFI+ +K NTG+ + N+++ P + K +
Sbjct: 198 ISVVKQGSRRRGALMGILNINHPDIEEFIDAKKENTGE--AVLNFFNLSVGFP-MDKKEI 254
Query: 279 IKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSML 338
+K L+ + G E E S+ + + KK+ L+RKI +
Sbjct: 255 LK--------------LYEEDG-ELELSH---------PRSTIRKKVKIRELFRKIATNA 290
Query: 339 FETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN 398
+++G P + F N P I+S+N C EI L+ + CNLGSI++ N
Sbjct: 291 WKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLSDYE----ACNLGSIDVAKFYNN 346
Query: 399 GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458
G +D L++ ++IA+R LDNVID+N + + K + R +GLGIMGF D L+ ++IP
Sbjct: 347 GFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIP 406
Query: 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518
Y+S+EA FA M I +A+ S EL +EKG + LLE R
Sbjct: 407 YNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFP------------------LLEISR 448
Query: 519 ---GSKYLKVNMSESLNWKKLRNRIK--KFGMRNSNCVAIAPTATISNIIGVSASIEPTY 573
++ M S ++R +K K RN + IAPT +ISNI S+ +EP +
Sbjct: 449 YRTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNF 508
Query: 574 RNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM--IANLKYFDGNLSQISRIPDDLRKI 631
+ + + T+ V ++ ++ L E + I G+L I +P+ ++K+
Sbjct: 509 LLAYTRFVTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKV 568
Query: 632 YATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT 686
+ A +I P + Q+++D + S I + + +D+ + +L L+T
Sbjct: 569 FVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSA--TVDDVLNV-YLEALRT 620
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 714
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 166/626 (26%), Positives = 288/626 (46%), Gaps = 74/626 (11%)
Query: 89 RYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSG- 147
RY H E R+ M + L+L + + E A + + + S F +TPT N G
Sbjct: 121 RYLEHFED-RVTM---------VALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGK 169
Query: 148 TIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQ 207
R +L SC+L + D++ I ++ LSK GG+ + +R G+PIK +S
Sbjct: 170 QQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSS 229
Query: 208 GVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIA 267
GVIP +K++ D NQ G R+GA YL H DI F++ ++ D++ R +++
Sbjct: 230 GVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLG 289
Query: 268 IWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKK-IS 326
+ +PD+ + + + LFSPYD+ ++GK F + I + + K I+
Sbjct: 290 VVIPDITFRLAKENAQMALFSPYDI---QRRYGKPFGDIAISERYDELIADPHVRKTYIN 346
Query: 327 ALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL---------NT 377
A ++ + + FE+G+P+I F+D N +P G I+ SNLC+EI N
Sbjct: 347 ARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNL 404
Query: 378 SKNEIG---VCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKY 433
IG CNLGS+N+ H+ +D + +T+ A+R L V D+++ +V
Sbjct: 405 DYTHIGHDISCNLGSLNIA-HV----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAA 459
Query: 434 SNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR- 492
N +GLG M L I Y S EA+ F + I ++A + S LA E+G+
Sbjct: 460 GNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKT 519
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN------WKKLRNRIKKFGMR 546
++ + S + G L+ + + +K + + W KLR+ + ++G+
Sbjct: 520 FAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIY 579
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N N A+ PT +IS I ++SI P + I+ KE K ++ +
Sbjct: 580 NQNLQAVPPTGSISYINHATSSIHPIVAKIEIR---------------KEGKTGRVYYPA 624
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN 666
+ D +Y A++I P II+ + + +DQ SL ++ +
Sbjct: 625 PFMTNENLD---------------MYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPD 669
Query: 667 -KSGKKLDETYKLAWLRGLKTTYYLR 691
+ + +++ AW +G+K+ YY+R
Sbjct: 670 TATTRDINKAQIYAWRKGIKSLYYIR 695
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 106/503 (21%), Positives = 184/503 (36%), Gaps = 96/503 (19%)
Query: 188 DWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDV-AVAVNQGGKRKGAICAYLETWHMDIEE 246
D + +R G+ I G G + G +P + ++ DV V N+ G R A+ A DI
Sbjct: 253 DLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLTAVDA------ADICN 306
Query: 247 FIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEES 306
I G+ RR +A+ D +K+ L +H+++
Sbjct: 307 LIGKAVVAGNVRRSAE---LALGSNDDQDFISMKQDQEKL--------MHHRWASN---- 351
Query: 307 YILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN-----IRSPQQHV 361
N + SA ++ I + + E G P I D + Q +
Sbjct: 352 -----NSVAVD--------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398
Query: 362 -GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
G + +N C EI+L + CNL + + + G L++ +A R V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEVFPLIAEEQG----WDLQEVFALAARYAKRV 450
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCL---------------------HIMKIPY 459
+ Y + ++ ++R +G+ + G QD L +K+P
Sbjct: 451 T-FSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKVPV 509
Query: 460 SSKEAIKFADQ-----------------SMEMICYYAYYASTELAE----EKGRYSSYDG 498
K AIK DQ E I + S +A+ +G + Y G
Sbjct: 510 YDKRAIKMVDQLYKAVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHY-G 568
Query: 499 SLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTAT 558
+ Q I QDS LL + Y + N + IK G N N A A T +
Sbjct: 569 AYLIQRIRFQDSDPLLPALKACGYRTEADIYTENTTCVEFPIKAVGADNPN-FASAGTVS 627
Query: 559 ISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNL 618
I+ A ++ + + + ++ + +E ++ V+ L ++ + + L YF G+L
Sbjct: 628 IAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQ--VESLLRQYRFITKSTSLLPYFGGSL 685
Query: 619 SQISRIPDDLRKIYATAFEISPN 641
Q + P D + EI+ N
Sbjct: 686 QQAPKEPIDKETYEKRSQEITGN 708
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWL---RGLK 685
E++ WI +AG +W DQ++ L + K G+ ++ T++ A+L GLK
Sbjct: 284 EVNEIWICDAGRFGHEWADQNR-LKTPLVRKEGRLVEATWEEAFLALKEGLK 334
>pdb|1MMO|B Chain B, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MMO|C Chain C, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
Length = 384
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EF++ NR +++ G W E IA L+ F G +++ D +I A+ + + +WI
Sbjct: 303 EFSDYNRTVMRNWT--GKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIE 360
Query: 645 EAGSV 649
+ S
Sbjct: 361 DYASA 365
>pdb|1FZ4|C Chain C, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|D Chain D, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|C Chain C, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ7|D Chain D, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FYZ|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|C Chain C, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|D Chain D, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|C Chain C, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ3|D Chain D, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ8|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ9|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ9|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|C Chain C, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|D Chain D, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|C Chain C, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|D Chain D, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1XU5|C Chain C, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|D Chain D, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|C Chain C, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVB|D Chain D, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVC|C Chain C, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVC|D Chain D, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVD|C Chain C, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVD|D Chain D, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVE|C Chain C, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|D Chain D, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|C Chain C, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVF|D Chain D, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVG|C Chain C, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|D Chain D, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|C Chain C, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|D Chain D, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|4GAM|B Chain B, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|G Chain G, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|L Chain L, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|Q Chain Q, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 389
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EF++ NR +++ G W E IA L+ F G +++ D +I A+ + + +WI
Sbjct: 308 EFSDYNRTVMRNWT--GKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIE 365
Query: 645 EAGS 648
+ S
Sbjct: 366 DYAS 369
>pdb|1W36|B Chain B, Recbcd:dna Complex
pdb|1W36|E Chain E, Recbcd:dna Complex
pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1180
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 31/142 (21%)
Query: 199 IKGTNGRSQGVIPFLKVV--NDVAVAVNQGGKRKGAICAYLET----WHMDIEEFIELRK 252
++ N QG P +K +D +A R I A ++T W + E L +
Sbjct: 194 LRDINRYLQGEAPVIKAPPPDDETLA-----SRHAQIVARIDTVKQQWRDAVGELDALIE 248
Query: 253 NTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWT--LFSPYDVPDLHNKFGKEFEESYILY 310
++G DRR+ + N A W+ K S W + Y +P+ KF + F
Sbjct: 249 SSGIDRRKFNRSNQAKWID--------KISAWAEEETNSYQLPESLEKFSQRF------L 294
Query: 311 ENQTKLG----KIKLFKKISAL 328
E++TK G + LF+ I L
Sbjct: 295 EDRTKAGGETPRHPLFEAIDQL 316
>pdb|1XMF|C Chain C, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|D Chain D, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|C Chain C, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMG|D Chain D, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMH|C Chain C, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|D Chain D, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
Length = 388
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EF++ NR +++ G W E IA L+ F G +++ D +I A+ + + +WI
Sbjct: 307 EFSDYNRTVMRNWT--GKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIE 364
Query: 645 EAGS 648
+ S
Sbjct: 365 DYAS 368
>pdb|1MTY|B Chain B, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|C Chain C, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
Length = 384
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EF++ NR +++ G W E IA L+ F G +++ D +I A+ + + +WI
Sbjct: 303 EFSDYNRTVMRNWT--GKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIE 360
Query: 645 EAGS 648
+ S
Sbjct: 361 DYAS 364
>pdb|2IBO|A Chain A, X-Ray Crystal Structure Of Protein Sp2199 From
Streptococcus Pneumoniae. Northeast Structural Genomics
Consortium Target Spr31
pdb|2IBO|B Chain B, X-Ray Crystal Structure Of Protein Sp2199 From
Streptococcus Pneumoniae. Northeast Structural Genomics
Consortium Target Spr31
pdb|2IBO|C Chain C, X-Ray Crystal Structure Of Protein Sp2199 From
Streptococcus Pneumoniae. Northeast Structural Genomics
Consortium Target Spr31
pdb|2IBO|D Chain D, X-Ray Crystal Structure Of Protein Sp2199 From
Streptococcus Pneumoniae. Northeast Structural Genomics
Consortium Target Spr31
Length = 104
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 557 ATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDG 616
A I +I + E T ++ L GEF E+ R L + L+ G +++ AN+K
Sbjct: 20 AVIDQVIAYLQTQEVTXVVTPFETVLEGEFDELXRILKEALEVAGQEADNVFANVKI--- 76
Query: 617 NLSQISRIPDDLRK 630
N+ +I I + L K
Sbjct: 77 NVGEILSIDEKLEK 90
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 429 KKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAE 488
K ++YS+L MG + L + + + S+ A+ ++D +E CY+ E+ +
Sbjct: 166 KDSEYSHLTRVAPAYAKMG-EMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQ 224
Query: 489 EKGRYSS 495
E+G ++S
Sbjct: 225 EEGLHTS 231
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 429 KKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAE 488
K ++YS+L MG + L + + + S+ A+ ++D +E CY+ E+ +
Sbjct: 167 KDSEYSHLTRVAPAYAKMG-EMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQ 225
Query: 489 EKGRYSS 495
E+G ++S
Sbjct: 226 EEGLHTS 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,246,765
Number of Sequences: 62578
Number of extensions: 953945
Number of successful extensions: 2378
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2215
Number of HSP's gapped (non-prelim): 39
length of query: 749
length of database: 14,973,337
effective HSP length: 106
effective length of query: 643
effective length of database: 8,340,069
effective search space: 5362664367
effective search space used: 5362664367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)