BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8865
(749 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2
Length = 1047
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE GK D+ ++++F ++I +G D LN +L
Sbjct: 303 IEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L++A+ RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 362 LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV D+L I++ I +NA+LS
Sbjct: 422 KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+LFKK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGSINL H+ LD KL +TI IA+RMLDN
Sbjct: 662 HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
+K+ GMR+ +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1
Length = 1047
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/702 (57%), Positives = 528/702 (75%), Gaps = 2/702 (0%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+EK+P Y+ V A LL+ + KE + D+ Y+++F ++I +G D+ LNP+L
Sbjct: 303 IEKEPDYAFVAAELLLDVVYKEALDRSRGDEDLEQVYRDHFKRYIMEG-DSYRLNPELKN 361
Query: 61 -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
F+L L+NA+ RDLQF+Y+G++ LYDRYF H +G R+E PQ F+MR+AMGL+L E +
Sbjct: 362 LFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWMRVAMGLALKEQD 421
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NA+LS
Sbjct: 422 KTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVNIYKVISDNAMLS 481
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT +R+ G+ IKGTNG+SQGVIPF+KV ND AVAVNQGGKRKGA+C YLE
Sbjct: 482 KWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGDDRRR HD+N A W+PDLF KR+ +K +WTLFSP DVP LH+ +
Sbjct: 542 WHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLFSPDDVPGLHDAY 601
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE Y YE + G+I+L+KK+ A LWRK+LSMLFETGHPW+TFKD NIRS Q
Sbjct: 602 GEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
H G++ SNLCTEI LN S+ E VCNLGS+NL H+ + LD KL +TI IA+RMLDN
Sbjct: 662 HTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGLDEEKLSETISIAVRMLDN 721
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VIDIN+Y K+AK +N HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722 VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS LA+E+G YSSY GS WD+G+LP D+++LL RG L+++ S +W+ +R+
Sbjct: 782 IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMDTSVRKDWEPIRSL 841
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I++ GMRN +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT N YL+++LKK
Sbjct: 842 IREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
G+WD M+ +LKYFDG+L +I R+PD ++ I+ TAFEI P WI+E S RQKWID QS
Sbjct: 902 LGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECASRRQKWIDMGQS 961
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
LN+Y++ GKKL Y AW +GLKTTYYLRS SA +KS
Sbjct: 962 LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
pneumoniae GN=nrdA PE=3 SV=1
Length = 1044
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/751 (55%), Positives = 547/751 (72%), Gaps = 9/751 (1%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+E++P Y+ + A LL + +E G + ++ +K++F ++I G + +L NP+L +
Sbjct: 301 IEREPDYAFIAAELLTSSLYEETLGCSSQDPNLSEIHKKHFKEYILNGEEYRL-NPQLKD 359
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
++L LS L RD QF+Y+G++ LYDRYF EG R+E Q F+MR++MGL+LNE +
Sbjct: 360 YDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQ 419
Query: 121 EKC-AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ AI FYNLLS+F + +TPTLFNSG SQLSSCYLSTV DDL I++ I +NALLS
Sbjct: 420 KNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKVISDNALLS 479
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+AGG+GNDWT VR+ G+ IKGTNG+SQGVIPF+KV ND A+AVNQGGKRKGA+C YLE
Sbjct: 480 KWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAMCVYLEN 539
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+D E+F+ELRKNTGD+RRRTHD+N A W+PDLF KR+ KK WTLFSP DVP LH +
Sbjct: 540 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDDVPGLHEAY 599
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE+ Y YE + + G+I+L+KK+ A LWRK+LSML+ETGHPWITFKD NIRS Q
Sbjct: 600 GLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDPSNIRSNQD 659
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
HVG++ SNLCTEI LN S++E VCNLGSINL H++N KLD KLK+TI IA+R+LDN
Sbjct: 660 HVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDKLDEEKLKETISIAIRILDN 719
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID+N+Y +AK +NL HR VGLG+MGFQD L+ + I Y+S+EA++F+D+ E+I YYA
Sbjct: 720 VIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDECSEIIAYYA 779
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
AS+ LA+E+G Y+SY GS WD+G LP D+++LL++ RG + V+ S +W +R+
Sbjct: 780 ILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKKDWTPVRDT 839
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I+K+GMRNS +AIAPTATISNIIGV+ SIEP Y++L +KSNLSGEFT N YL+K+LK+
Sbjct: 840 IQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNTYLIKKLKE 899
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
GLWD M+ +LKYFDG+L +I RIP+ L+K++ TAFEI P WIIE S RQKWID S
Sbjct: 900 LGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQKWIDMGVS 959
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
LN+Y++ GKKL Y AW +GLKTTYYLRS +A +KS ++ + + K
Sbjct: 960 LNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQPRWMKNKS 1019
Query: 720 YNKNL-QEIKNNKKCLINSEINDVNECESCQ 749
+ ++ E K C + CESCQ
Sbjct: 1020 ASTSIVVERKTTPVCSME------EGCESCQ 1044
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain J99) GN=nrdA PE=3 SV=1
Length = 788
Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust.
Identities = 317/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLAQNEQELNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLFMKRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QS+N++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L E Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1
Length = 788
Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 432/766 (56%), Gaps = 110/766 (14%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P +S V +RL +Y + +V G + KEYF KG ++L +F+L
Sbjct: 72 PNWSFVASRLFLYDLYHKVSGFTGYR-----HLKEYFENAEEKG---RILKGFKEKFDLE 123
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L++ + PERD QFNYLG+K LYDRY L IE+PQ FM IAM L+ NE K
Sbjct: 124 FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQNEQEPNKI 183
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A++FY +LS F MC+TPTL N+ T + QLSSCY+ + PD++ GIF+S KE ALLSKY G
Sbjct: 184 ALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMALLSKYGG 243
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G D++ VRS+GS I G S G IPFLK+ NDVA+AV+Q G RKGAI YLE WH+D
Sbjct: 244 GIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVYLEIWHID 303
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EFI+LRKN+GD+RRR HD+ A+WV DLF+KRV++ + WTLF PY+ DL +G++F
Sbjct: 304 VMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLTELYGQDF 363
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y+ YE K+ K + I+A LW+KIL FE G P++ FKD N +P H GI
Sbjct: 364 EKRYLEYEKDPKIIK----EYINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPNAHAGI 419
Query: 364 IHSSNLCTEITLNTSKNE--------------------------IGVC--NLGSINL--- 392
I SSNLCTEI NT+ N I C L S ++
Sbjct: 420 IRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLTSTDILKG 479
Query: 393 ------TLHMKNGK-----LDPIKLKK---------TIRIAMRMLDNVIDINYYAVKKAK 432
T K+G+ L I L K + I +R+LDNVID+N+Y +K K
Sbjct: 480 KPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNFYPNRKVK 539
Query: 433 YSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492
+NL++R +GLG+MG L +I + SKE ++ D ME I Y+A S LA+EKG
Sbjct: 540 ATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGV 599
Query: 493 YSSYDGSLWDQGILPQD-----SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRN 547
Y ++ S W +GI P D +LKL EK + + +W+ LR ++K GMRN
Sbjct: 600 YKDFENSEWSKGIFPIDKANNEALKLTEKGL--------FNHACDWQGLREKVKANGMRN 651
Query: 548 SNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
+AIAPT++IS ++G + +IEP Y+ + NLSG +
Sbjct: 652 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------ 693
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY--IS 665
+ NL N Y +A++I +I+A +VRQKWIDQ QSLN++ I
Sbjct: 694 VPNLNVETWNF-------------YTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIE 740
Query: 666 NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
N SGK L + Y LAW GLK+TYYLRS S + +KS + ++ N
Sbjct: 741 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc22 PE=1 SV=2
Length = 811
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 285/747 (38%), Positives = 438/747 (58%), Gaps = 45/747 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNK--LLNPK 57
K P Y+ + AR+ + + K+ VF ++Q+ ++N D +++ K
Sbjct: 70 KHPDYAILAARIAVSNLHKQTEKVFSTVVQQL----------HDYVNPKTDKPAPMISDK 119
Query: 58 LAEFNL---SLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+ + + L +A++ +RD +N+ G K L Y L I+G E PQ MR+A+G+
Sbjct: 120 IYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIH 179
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIK 173
+ + AI+ YNL+S F ++PTLFN+GT R QLSSC+L T+ DD + GI++++K
Sbjct: 180 GEDI---EAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLK 236
Query: 174 ENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGA 232
A++SK AGG+G + +R+ GS I GTNG S G++P ++V N+ A V+QGG KR GA
Sbjct: 237 MCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGA 296
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
AYLE WH D+ +F+ELRK G++ R +M A+W+PDLFM+RV + WT F P +
Sbjct: 297 FAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEA 356
Query: 293 PDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
P L + +G EF Y YE + + G+ + + A +W IL ETG+P++ +KD+C
Sbjct: 357 PGLADVWGDEFVALYEKYEKENR-GR----RSLPAQKVWYAILQSQVETGNPFMLYKDSC 411
Query: 353 NIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRI 412
N +S Q++VG I SNLCTEI +S +E+ VCNL S+ L +K+GK + KL +++
Sbjct: 412 NRKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKV 471
Query: 413 AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM 472
R L+ +ID+NYY V +A+ SN+RHRPVGLG+ G D +++P+ S A K Q
Sbjct: 472 VTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIF 531
Query: 473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN 532
E I + A AS E+A+ +G Y SY+GS QGIL D VN ++ +
Sbjct: 532 ETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYD------------MWNVNPTDLWD 579
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRY 592
W +L+ +I K G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N +
Sbjct: 580 WAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPW 639
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
L+K+L ++ LW+E M L DG++ I IP DL+ +Y T +EIS +I+ + R
Sbjct: 640 LLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGP 699
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVN 711
+IDQSQSLNI++ + S K+ + W +GLKT YYLR+++A+ A K +D V
Sbjct: 700 FIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIK----FTVDPVA 755
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSE 738
L + + +N + + N K I++E
Sbjct: 756 LRARNEESNEENKKPVIKNGKAEISAE 782
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens
GN=RRM1 PE=1 SV=1
Length = 792
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus
GN=Rrm1 PE=1 SV=2
Length = 792
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 284/707 (40%), Positives = 420/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGRHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 SSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYESYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNGKLDPIKLKKT 409
+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS ELA+E G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYD------------MWNVAPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii
GN=RRM1 PE=2 SV=1
Length = 792
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 283/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + E +IN N +P +A
Sbjct: 70 KHPDYAILAARIAVSNLHKEAKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60 EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
+ L + L++A++ +RD +NY G K L Y L I G E PQ MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
+K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
+ P L +G+EFE+ Y YE Q ++ K+ + A LW I+ ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
+CN +S QQ++G I S+LCTEI TSK+E+ VCNL S+ L +++ + D KL +
Sbjct: 410 SCNRKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
Q E I Y A AS +LA+E+G Y +Y+GS +GIL D V ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
+WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +
Sbjct: 578 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS +++ +
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 816
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 292/775 (37%), Positives = 431/775 (55%), Gaps = 63/775 (8%)
Query: 5 PVYSQVTARLLMYCIQKEV---FGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y+ + AR+ + + K F + IK + ++ G+ + L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNTKKSFSETIKDM--------FYHVNDRSGLKSPLIADDVFEI 123
Query: 62 ---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
N + L + ++ +RD +++Y G K L Y L ++G +E PQ MR+A+G+ ++
Sbjct: 124 IMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ I+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI+E++KE A+
Sbjct: 184 D---SVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+ EF+ELRKN G + R D+ A+W+PDLFM+RV W+LF P + P L
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EFE Y YE + K K+ + A LW +IL+ ETG P++ FKD+CN +S
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKV-----VQAQQLWYEILTSQVETGTPYMLFKDSCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL--------------------TLHM 396
QQ++G I SSNLCTEI TS E VCNL SI L +L
Sbjct: 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDS 475
Query: 397 KNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMK 456
KN D KL + L+ +ID+NYY V+ AK SN+RHRP+G+G+ G D ++
Sbjct: 476 KNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLG 535
Query: 457 IPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516
+P+ S EA + E I Y+A ASTELA G Y +Y GS +GIL D ++
Sbjct: 536 MPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPS 595
Query: 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576
+R +W LR+ I K G+RNS VA PTA+ S I+G + EP N+
Sbjct: 596 DR------------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
Query: 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAF 636
+ + LSGEF +N++L+ +L GLW ++ L +G++ ++ IPDDL+ IY T +
Sbjct: 644 YSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVW 703
Query: 637 EISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
EI +++ + R +IDQSQSLNI++ + KL + W +GLKT YYLRS +A
Sbjct: 704 EIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAA 763
Query: 696 NYAKKSNFEMGIDSVNLDE-ISIKGYNKNLQEIKNNKK-CLINSEINDVNECESC 748
A K +D+ L E S+ +K ++E N K + + + EC +C
Sbjct: 764 ADAIK----FTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit
OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1
Length = 788
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 270/642 (42%), Positives = 395/642 (61%), Gaps = 24/642 (3%)
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
+ E N L++A++ +RD + Y G K L Y L I +E PQ MR+++G+ ++
Sbjct: 129 IIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGDD 188
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ A
Sbjct: 189 IT---SAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCA 245
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
L+SK AGG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA
Sbjct: 246 LISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAI 305
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI EF+ LRKNTG + R D+ +A+W+PDLFMKRV K W+L P + P L
Sbjct: 306 YLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGL 365
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +
Sbjct: 366 DDCWGEEFEALYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRK 420
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAM 414
S QQ++G I SNLCTEI ++ +EI VCNL SI L ++ K D +KL + ++
Sbjct: 421 SNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVIT 480
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ +ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++S EA + E
Sbjct: 481 RNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFET 540
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELAE G YS+Y+GS +G L D V ++ +W
Sbjct: 541 IYYAALEASCELAELNGPYSTYEGSPVSKGQLQFD------------MWGVTPTDQCDWA 588
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR +I K G+RNS +A PTA+ + I+G + SIEP N++ + LSG+F +N +++
Sbjct: 589 TLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHML 648
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
K+L ++GLW + M L +G++ I IP D++++Y T +EIS IIE + R +I
Sbjct: 649 KDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYI 708
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
DQSQSLNI+++ S + + W +GLKT YYLR+ A
Sbjct: 709 DQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPA 750
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL SI L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMVDGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/634 (41%), Positives = 389/634 (61%), Gaps = 24/634 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++ ++ ERD +NY G K L Y L I +E PQ MR+A+G+ + + AI
Sbjct: 131 LNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDID---SAI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNLLS F ++PTLFN+GT R Q+SSC+L + DD + GI++++K AL+SK AGG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + +R+ GS I GTNG S G+IP L+V N+ A ++QGG KR G + YLE WH D
Sbjct: 248 IGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWHSD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I F++L+KNTG++ RT D+ IA+W+PDLFMKRV W+L P + P L N +G EF
Sbjct: 308 IMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E Y LYE + + I I A +W+ I+ ETG P+I +KDACN +S QQ++G
Sbjct: 368 ERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
I SNLCTEI NE+ VCNL S+ L + + +G+ D +KLK +++ +R L+ +IDI
Sbjct: 423 IKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKIIDI 482
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
NYY + +A+ SN RHRP+G+G+ G D ++ P+ S EA + E I Y A AS
Sbjct: 483 NYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEAS 542
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
ELAE++G Y +Y GS GIL D ++ S+ NW+ L+++I+ +
Sbjct: 543 CELAEKEGPYDTYVGSYASNGILQYDLWNVVP------------SDLWNWEPLKDKIRTY 590
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS VA PTA+ + I+G + S+EP N++ + LSGEF +N +L++ L ++ LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++ I N DG Q + +P+D++++Y T +EI II+ + R +IDQSQS+NI+
Sbjct: 651 NDE-IKNRIMADGGSIQNTNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ S KL + W GLKT YYLR+ A+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila
melanogaster GN=RnrL PE=1 SV=2
Length = 812
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 292/757 (38%), Positives = 440/757 (58%), Gaps = 42/757 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF--- 61
P Y+ + AR+ + + KE K + +++ ++ +NK + K+ P ++EF
Sbjct: 83 PDYAILAARIAVSNLHKET-KKAFSDV-----FEDLYNH-VNKETNQKV--PLVSEFHYN 133
Query: 62 ----NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
N + L+++++ +RD +NY G K L Y L G E PQ MR+A+G+ +
Sbjct: 134 VVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGED 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTV-PDDLYGIFESIKENA 176
+ A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GIF+S+++ A
Sbjct: 194 ID---AAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA 250
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG KR GA
Sbjct: 251 MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAI 310
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L P+ P L
Sbjct: 311 YLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGL 370
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G EFE+ Y YE + + + + A LW I+ ETG+P++ FKDACN +
Sbjct: 371 HDVWGDEFEKLYEKYEQEGRANRT-----VKAQSLWFAIIEAQVETGNPYMLFKDACNRK 425
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAM 414
S QQ+VG I SNLCTEI ++ +EI VCNL SI L + + K D KLK+ +I
Sbjct: 426 SNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVT 485
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +IDINYY + +A+ SNLRHRPVG+GI GF D L +M+ PY S+EA Q E
Sbjct: 486 KNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFET 545
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELA+ +G Y +Y+GS +GIL D + +K + N+ +W+
Sbjct: 546 IYYGALEASCELAQTEGPYETYEGSPVSKGILQYD---MWDK------VPTNL---WDWQ 593
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
KL+ I+ G+RNS VA PTA+ + I+G + S EP N++ + LSGEF +N +L+
Sbjct: 594 KLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLL 653
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++L + LWD+ M + G++ I IP +R +Y T +EIS I+ + R +I
Sbjct: 654 RDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFI 713
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK--SNFEMGIDSVN 711
DQSQS NI+++ + KL + +W GLKT YYLR+ A A + N + G S+N
Sbjct: 714 DQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMN 773
Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ +G + +E + K + + + + C SC
Sbjct: 774 GQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810
>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1
Length = 806
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 272/632 (43%), Positives = 382/632 (60%), Gaps = 24/632 (3%)
Query: 74 RDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSS 133
RD ++Y G K L Y L I IE PQ MR+++G+ +++ ++ A++ Y+L+S
Sbjct: 137 RDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQ 193
Query: 134 FNFMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKENALLSKYAGGLGNDWTQV 192
F +TPTLFNSGT R Q+SSC+L S D + GIFE++K+ AL+SK AGG+G +
Sbjct: 194 KYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDI 253
Query: 193 RSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMDIEEFIELR 251
R S I+GTNG S G++P L+V ND A V+QGG KRKG+ Y+E WH DI EF++LR
Sbjct: 254 RGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLR 313
Query: 252 KNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYE 311
KN G + R D+ A+WVPDLFMKRV + WTL P + P L +G+EFE+ Y YE
Sbjct: 314 KNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYE 373
Query: 312 NQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCT 371
+ +GK K + A LW IL ETG P++ +KD+CN +S Q+++G I SNLC
Sbjct: 374 EEN-MGK----KTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCC 428
Query: 372 EITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVK 429
EI TS +E+ VCNL SI L + ++ + + KL + +I R LD +I+ NYY VK
Sbjct: 429 EIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVK 488
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
+AK SN RHRP+G+G+ G D +++ PY S A + + E + Y A S ELA
Sbjct: 489 EAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASI 548
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
G Y SY GS QGIL D + + +KY +W +L+ +I+K G+RNS
Sbjct: 549 HGPYESYQGSPASQGILQFD---MWNAKVDNKYW--------DWDELKAKIRKHGLRNSL 597
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+A PTA+ S I+G + S EP N++ + LSGEF +N +L+K+L +GLWDE M
Sbjct: 598 LLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQ 657
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSG 669
L +G++ IS IPDDL+++Y T +EI II+ + R +IDQSQSLNIYI +
Sbjct: 658 QLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTF 717
Query: 670 KKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
KL + W +GLKT YYLR+ +A A K
Sbjct: 718 AKLSSMHFYGWEKGLKTGAYYLRTQAATDAIK 749
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio
GN=rrm1 PE=2 SV=1
Length = 794
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 287/753 (38%), Positives = 433/753 (57%), Gaps = 37/753 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + ++ + Y + + I + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSEVMEDL---YNYVNPLNSRHSPMISKETLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L I G E PQ MR+++G+ +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDI- 183
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+
Sbjct: 184 --AAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ G I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DI +F+EL+KNTG + +R D+ A+W+PDLFMKRV W+L P D P L
Sbjct: 302 EPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE + + ++ + A LW I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFEKLYAKYEQEGRAKRV-----VKAQQLWYAIIESQTETGTPYMLYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRM 416
+Q++G I SNLCTEI TS +E+ VCNL SI L +++ + + D KL ++ ++
Sbjct: 417 RQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY VK+A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
Y A +S ELA E G Y +Y G +GIL D + EK ++ +W L
Sbjct: 537 YAALESSCELAAEYGPYQTYAGCPVSKGILQYD---MWEK---------TPTDLWDWAAL 584
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+
Sbjct: 585 KEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKD 644
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++GLW+E M + +G++ I IPDDL+++Y T +EIS I++ + R +IDQ
Sbjct: 645 LTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQ 704
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLNI+I+ + KL + W +GLKT YYLR+ + + ++ L E
Sbjct: 705 SQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPG----ANPIQFTLNKEKLKET 760
Query: 716 SIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
K + +E K K + + + +EC C
Sbjct: 761 Q-KTTSSEDEETKERNKAAMVCSLENRHECLMC 792
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 274/707 (38%), Positives = 408/707 (57%), Gaps = 19/707 (2%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y + RL + + K + + ++ +K I +L + +A +
Sbjct: 75 KHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD--IANKH 132
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR-----IEMPQFFFMRIAMGLSLNE 117
+ L + ERD F Y G K L Y L + R +E PQ F+R+A+G+ +
Sbjct: 133 SAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALGIHGED 192
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
R K + Y+ +S F +TPTLFN+GT Q+SSC+L + +D + GI++++K+ A
Sbjct: 193 LERVK---ETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQCA 249
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G +R+ GS I GTNG S G++P L+V N+ A V+QGG KRKGA
Sbjct: 250 IISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAFAI 309
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI F+ L+KNTG + +R D+ +W+PDLFM+RV TWTL P P L
Sbjct: 310 YLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAPFL 369
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EF + Y YE + + + I A LW IL ETG P++ +KDACN +
Sbjct: 370 SDCYGQEFTDLYERYEREGRG-----VRTIQAQELWFLILESQVETGVPFMLYKDACNFK 424
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
S Q+++G I SNLCTEI TS++E+ VCNL SI L +K+G D + LK+ ++ R
Sbjct: 425 SNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFDYVALKEVTKVVTR 484
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
L+ VID N+Y V +A+YSNLRHRPVG+G+ G D ++ +P++ EA K Q E I
Sbjct: 485 NLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHPEAKKLNRQIFETI 544
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL-NWK 534
A ASTELAE+ G Y ++ GS +G L D + RG V+ L +W
Sbjct: 545 YIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNEDSVHSHCGLWDWD 604
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
L+ R+ K GMRNS +A PTA+ S I+G + IEP N++++ LSGEF +N++LV
Sbjct: 605 SLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLV 664
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
KEL + LW++ M + +G++S I IP+ +R++Y +EI +I+ + R ++I
Sbjct: 665 KELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAADRGRYI 724
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
DQSQSLN++++ + +L + +W +GLKT YYLRS A A K
Sbjct: 725 DQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2
Length = 929
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/635 (40%), Positives = 388/635 (61%), Gaps = 25/635 (3%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
+A++ +RD + Y G K L Y L ++G E PQ MR+A+G+ ++ R I
Sbjct: 131 FDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVER---VI 187
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNL+S F ++PTLFN+GT + QLSSC+L + +D + GI++++K A++SK AGG
Sbjct: 188 ETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMISKMAGG 247
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + ++R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH D
Sbjct: 248 IGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHAD 307
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EF++LRKN G + R D+ +A+W+PDLFMKRV + WTL P++ P L + +G EF
Sbjct: 308 VFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLADVYGDEF 367
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E LYE K GK + K + A LW IL ETG+P++ +KDACN +S Q+++G
Sbjct: 368 E---ALYEKYEKEGKGR--KTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGT 422
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVI 421
I SSNLCTEI ++ +E+ VCNL S+ L+ + +N D KL + ++ +R L+ +I
Sbjct: 423 IRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQVVVRNLNKII 482
Query: 422 DINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYY 481
DIN+Y VK+A SN+RHRP+G+G+ G D +++P+ S A K Q E I + A
Sbjct: 483 DINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALT 542
Query: 482 ASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIK 541
AS +LA+E+G Y++Y+GS QGIL D V + +W L+ IK
Sbjct: 543 ASCQLAKEQGPYATYEGSPVSQGILQYD------------MWNVTPTNLWDWTALKADIK 590
Query: 542 KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKG 601
K+G+RNS +A PTA+ S I+G + EP N++ + L+GEF +N +L+++L + G
Sbjct: 591 KYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMG 650
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLN 661
LW ++M + G++ I IP+D++ +Y T +EIS I++ + R +IDQSQSLN
Sbjct: 651 LWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLN 710
Query: 662 IYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
I++ + K+ + W GLKT YYLR+ +A
Sbjct: 711 IHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAA 745
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1
SV=2
Length = 888
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 281/737 (38%), Positives = 419/737 (56%), Gaps = 41/737 (5%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P Y+ + AR+ + + K+ + K ++ +Y + I + + N + N
Sbjct: 72 PDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYN--IVMENKD 129
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCA 124
L++A++ +RD Q++Y G K L Y L I G E PQ MR+A+G+ + + A
Sbjct: 130 KLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDI---EAA 186
Query: 125 IKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAG 183
++ YNL+S F ++PTLFN+GT + Q+SSC+L + +D + GI++++KE AL+SK AG
Sbjct: 187 LETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHM 242
G+G +RS GS I GTNG S G+IP ++V N+ A V+QGG KR GA YLE WH
Sbjct: 247 GIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHA 306
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +FI++RKN G + R D+ A+W+PDLFMKRV + TWTLFSP P L + +G E
Sbjct: 307 DIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDE 366
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE Y YE + + K I A LW IL ETG P++ +KDACN +S Q+++G
Sbjct: 367 FEALYTRYEKEGR------GKTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLG 420
Query: 363 IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGKLDPIKLKKTIRIA---MRM 416
+I SSNLC EI ++ +E VCNL S+ L ++ +GK KK IA R
Sbjct: 421 VIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRN 480
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY V++A+ SN+RHRP+ LG+ G D ++++P+ S+EA Q E I
Sbjct: 481 LNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIY 540
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ + AS ELA++ G Y ++ GS QGIL D +K G +W L
Sbjct: 541 HASMEASCELAQKDGPYETFQGSPASQGILQFDMWD--QKPYGM----------WDWDTL 588
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R I K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N YL+++
Sbjct: 589 RKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRD 648
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L G+WDE M L +G++ + +P +L+ +Y T +EIS II + R +IDQ
Sbjct: 649 LVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQ 708
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
S SLN+++ + KL + W +GLKT YYLR+ +A+ A + ID D+
Sbjct: 709 SHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAA----IQFTIDQKIADQA 764
Query: 716 SIKGYNKNLQEIKNNKK 732
+ +N+ +I N K+
Sbjct: 765 T-----ENVADISNLKR 776
>sp|O66503|RIR1_AQUAE Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex
aeolicus (strain VF5) GN=nrdA PE=3 SV=1
Length = 801
Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust.
Identities = 284/769 (36%), Positives = 430/769 (55%), Gaps = 128/769 (16%)
Query: 5 PVYSQVTARLLMYCIQKEVF---GKEIKQIDIPIKYKEYFSK--------FINKGIDNKL 53
P ++ ARLL+Y + K+V G ++ D KYK Y K ++ KGI +
Sbjct: 72 PDWTYTAARLLLYDLYKDVAHLRGYSLR--DDLGKYKPYNRKNFYSFVKEYVEKGIYGEY 129
Query: 54 LNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMG 112
L +E + + L+N + PERDL F Y G+KILYDRY + E G IE+PQ +M IAM
Sbjct: 130 LLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELPQEMYMLIAMT 189
Query: 113 LSLNESNRE--KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFE 170
L++ E E K A KFY++LS +TPTL N+ +QLSSC++ TV DDL+ IF+
Sbjct: 190 LAVPEKPEERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLTVDDDLFDIFD 249
Query: 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK 230
++K+ ++SK+AGGLG ++R+ G+PI+ G S GVIP +K++ND V+Q G RK
Sbjct: 250 NVKKAGMISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDTMTYVDQLGMRK 309
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
G+ L+ WH DI +F+E++ N GD+R++ HD++ A+ +PDLFMKR+ + WTL PY
Sbjct: 310 GSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRLKNREDWTLIDPY 369
Query: 291 -------------------DVPDLH--------------------NKFGKEFEESYI-LY 310
+P H + +G+EFE+ Y+ L
Sbjct: 370 WARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFYGEEFEKWYLELE 429
Query: 311 ENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLC 370
EN K KK+++ LW+++L++ FETG P+I F+D N ++P +H G+++SSNLC
Sbjct: 430 ENLPSYAK----KKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTGMVYSSNLC 485
Query: 371 TEI--TLNTSKNE-------------------IGVCNLGSINL-TLHMKNGKLDPIKLKK 408
EI T++ SK+E + VCNLGS+NL +H + ++K+
Sbjct: 486 HEIVQTMSPSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNLGKVHTEE------EIKE 539
Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
+ + +RMLDNVI++N+YA+ +A+Y+N R+R +G+G+ + CL I + S+E +KFA
Sbjct: 540 VLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWESEEHLKFA 599
Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528
D+ E+I +YA S ELA+E+GRY +DGS W +GIL S++ +E+
Sbjct: 600 DKLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGILFGRSVEEIEENSRQN------G 653
Query: 529 ESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTE 588
+L W++L IKK+G+RN+ +A+ PT + S I+G + SI+P + + + N+S
Sbjct: 654 NNLPWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMS----- 708
Query: 589 INRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648
G L Q+ D Y TA+ I W I A +
Sbjct: 709 ---------------------------GILPQVPPEVDRFYWHYKTAYTIDHEWTIRAAA 741
Query: 649 VRQKWIDQSQSLNIYI--SNKSGKKLDETYKLAWLRGLKTTYYLRSISA 695
VRQKWIDQ+QSLN+++ N G +L Y+LAW GLKT YYLRS SA
Sbjct: 742 VRQKWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKTIYYLRSRSA 790
>sp|O61065|RIR1_CRYPV Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium
parvum GN=RNR1 PE=3 SV=2
Length = 803
Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 279/708 (39%), Positives = 413/708 (58%), Gaps = 36/708 (5%)
Query: 46 NKGIDNKLLNPKLAEF---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMP 102
N+G L++ + +F N +++ + +D +++Y K L Y L I+ +E P
Sbjct: 106 NQGCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERP 165
Query: 103 QFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP 162
Q MR++ G+ + + A++ Y LLS F +TPTLFNSGT R Q+SSC+L +P
Sbjct: 166 QHLLMRVSCGIHCGDI---EAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIP 222
Query: 163 DD-LYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAV 221
+D + GIF+++ + A +SK AGGLG + +R GS I+GTNGRS G+IP L+V ND A
Sbjct: 223 EDSINGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTAR 282
Query: 222 AVNQGG-KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIK 280
++QGG KRKGAI YLE WH+D+ EFIE+RKN G + R D+ A+WVPDLFM+RV K
Sbjct: 283 YIDQGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEK 342
Query: 281 KSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFE 340
WTL P + L + +G +F++ Y YE Q + G+ K + A LW IL E
Sbjct: 343 DQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQGR-GR----KTMKAQKLWFLILQAQIE 397
Query: 341 TGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKN 398
TG P+I +KDA N +S Q+++G I SSNLCTEI TS +E+ VCNL SI L + N
Sbjct: 398 TGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNN 457
Query: 399 GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458
D KLK+ ++ R L+ +ID+ YY++K+ K SNLRHRP+G+GI G DC ++++P
Sbjct: 458 KTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMP 517
Query: 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518
Y S+ A K Q E+I Y A AS ELAE+ G Y +Y GS +GIL D +
Sbjct: 518 YESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD-- 575
Query: 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHI 578
S +W L++RI K G+RNS ++ PTA+ S I+G + S EP N++
Sbjct: 576 ---------SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYH 626
Query: 579 KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI 638
+ LSGEF +N +L+ +L + GLWD+ + N+ +G++ I IP+D+R++Y T +EI
Sbjct: 627 RRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEI 686
Query: 639 SPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANY 697
+I+ + R ++ QSQSLNI++ N + KL + W +GLKT YYLR+ SA
Sbjct: 687 KQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATR 746
Query: 698 AKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNEC 745
+ +D+ +K K ++ NK+ + E + C
Sbjct: 747 PIQ---------FTVDQQLLKSETKEKDSLETNKRQALEPEAQKLIAC 785
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1
SV=4
Length = 869
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 257/646 (39%), Positives = 380/646 (58%), Gaps = 30/646 (4%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD Q+ Y G K L Y L + G E PQ MR+A+G+ ++
Sbjct: 127 NKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGIHGSDI--- 183
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
+ +K YNL+S F ++PTLFN+GT Q+SSC+L + DD + GI++++KE A++SK
Sbjct: 184 ESVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAMISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +RS GS I GTNG S G+IP ++V N+ A V+QGG KR GA +LE
Sbjct: 244 TAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALFLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +F+++RK G + R D+ A+W+PDLFMKRV + WTLFSP P L + +
Sbjct: 304 WHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLDDVW 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFEE Y YE + + K I A LW IL ETG P++ +KDACN ++ QQ
Sbjct: 364 GDEFEELYTRYEREGR------GKTIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQ 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM------KNGKLDPIKLKKTIRIA 413
++G I SSNLC EI +S +E VCNL SI L + K + +L + ++
Sbjct: 418 NLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLHEIAKVI 477
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
L+ VID NYY V +A+ SN++HRP+ LG+ G D ++++P+ S+EA Q E
Sbjct: 478 THNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTLNKQIFE 537
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I + AS ELA+++G+YS+++GS +GIL D K G +W
Sbjct: 538 TIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWN--AKPFGM----------WDW 585
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+ LR I K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N YL
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
+++L G+WD+SM L +G++ + +P +L+++Y T +EIS II + R +
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
IDQS SLN+++ S K+ + W +GLKT YYLR+ +A+ A
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAA 751
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR1 PE=3 SV=1
Length = 804
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/633 (41%), Positives = 376/633 (59%), Gaps = 32/633 (5%)
Query: 76 LQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFN 135
++Y G K L Y L I IE PQ MR+++G+ +++ ++ A++ Y+L+S
Sbjct: 140 FNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKY 196
Query: 136 FMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRS 194
F +TPTLFNSGT R Q+SSC+L S D + GIFE++K+ AL+SK AGG+G +R
Sbjct: 197 FTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRG 256
Query: 195 LGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMDIEEFIELRKN 253
S I+GTNG S G++P L+V ND A V+QGG KRKG+ Y+E WH DI EF++LRKN
Sbjct: 257 QNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVYIEPWHSDIFEFLDLRKN 316
Query: 254 TGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQ 313
G + R D+ A+WVPDLFMKRV + WTL P + P L +G+EFE+ Y YE +
Sbjct: 317 HGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEE 376
Query: 314 TKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEI 373
+GK K + A LW IL ETG P +KD+CN + P +++G I SNLC EI
Sbjct: 377 N-MGK----KTVLAQDLWFAILQSQIETGVPIYLYKDSCNAK-PIKNLGTIKCSNLCCEI 430
Query: 374 TLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKA 431
TS +E+ VCNL SI L + ++ + + KL + +I R LD +I+ NYY VK+A
Sbjct: 431 IEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEA 490
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAE--- 488
K SN RHRP+G+G+ G D +++ Y S A + + E + YYA+ E++
Sbjct: 491 KTSNTRHRPIGIGVQGLADTFMLLRYLYESDAAKELNKRIYETM----YYAALEMSVDWL 546
Query: 489 EKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNS 548
+ G Y SY GS QGIL D + + +KY +W +L+ +I K G+RN
Sbjct: 547 QSGPYESYQGSPGSQGILQFD---MWNAKVDNKYW--------DWDELKLKIAKTGLRNL 595
Query: 549 NCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMI 608
+A PTA+ S I+G + S EP N++ + LSGEF +N +L+K+L +GLWDE M
Sbjct: 596 LLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMK 655
Query: 609 ANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKS 668
L +G++ IS IPDDL+++Y T +EI II+ + R +IDQSQSLNIYI +
Sbjct: 656 QQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGYFIDQSQSLNIYIQKPT 715
Query: 669 GKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
KL + W +GLKT YYLR+ +A A K
Sbjct: 716 FAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIK 748
>sp|Q54Q71|RIR1_DICDI Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium
discoideum GN=rnrA PE=3 SV=1
Length = 870
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 255/635 (40%), Positives = 363/635 (57%), Gaps = 32/635 (5%)
Query: 74 RDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSS 133
RD +++ G K L Y I G +E PQ MR+++G+ + AI Y LS
Sbjct: 157 RDFDYDFFGFKTLERSYLHRINGKIVERPQHMLMRVSIGI---HGEDLESAINTYKRLSE 213
Query: 134 FNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGGLGNDWTQV 192
F +TPTLFN+GT Q+SSC+L + +D + GI++++K+ AL+SK AGG+G ++
Sbjct: 214 KLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKI 273
Query: 193 RSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMDIEEFIELR 251
R+ S I+GTNG S G++P L+V ND A V+QGG KRKGA YLE WH D+ EFI+L+
Sbjct: 274 RAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFIDLK 333
Query: 252 KNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYE 311
KNTG + R D+ A+WV D+FM+RV + W LF P + P L +E Y+ YE
Sbjct: 334 KNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAPGLAETHSEEHRALYLKYE 393
Query: 312 NQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCT 371
L + + I A LW I+ ETG P+I +KDACN +S Q+++G I SSNLCT
Sbjct: 394 ATPDLPR----RVIKAQELWFAIMESQVETGTPFILYKDACNAKSNQKNLGTISSSNLCT 449
Query: 372 EITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIK-------LKKTIRIAMRMLDNVID 422
EI TS +EI VCNL SI L + K G DP + L + ++ L+ +ID
Sbjct: 450 EIIQYTSPDEIAVCNLASIALPKFVRQKVGSTDPKEKEFDHQFLFEITKLITVNLNVIID 509
Query: 423 INYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYA 482
NYY V +AK SNLRHRP+G+GI G D M++P+ S A K + E I + A A
Sbjct: 510 RNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRMPFDSVAAAKLNVEIAETIYFAALTA 569
Query: 483 STELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLR-NRIK 541
S ELA G Y S+ GS +GIL D V S NW +L+ N +
Sbjct: 570 SHELAIRDGTYESFKGSPASKGILQFD------------MWNVTPSSRWNWAELKDNIVN 617
Query: 542 KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKG 601
K G+RNS +A PTA+ S I+G + EP N++ + L+GEFT +N+ L+++L + G
Sbjct: 618 KGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELG 677
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLN 661
+W M + G++ I IPDDL+++Y T +EI +I+ + R +IDQSQS N
Sbjct: 678 IWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFN 737
Query: 662 IYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
++I+ + KL + +W +GLKT YYLR+ A
Sbjct: 738 VFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPA 772
>sp|Q8SR37|RIR1_ENCCU Ribonucleoside-diphosphate reductase large chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0920 PE=3 SV=1
Length = 768
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 249/693 (35%), Positives = 396/693 (57%), Gaps = 34/693 (4%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y Q+++R+++ I + +++I +Y K ++G+ ++ + + E
Sbjct: 72 KHPEYGQISSRIIVSYIHEITMDSFVEKI-------KYIQK--HRGMVSEEMYGIILEHG 122
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
+ + E D F+Y G+ L Y + + IE PQ FMR+A L +++++ EK
Sbjct: 123 -ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVA--LQIHKTDFEK 179
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKY 181
+ YNLLS F +TPTL+NS QL+SC+L T +D + G++ I + A+++KY
Sbjct: 180 VR-EVYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKY 238
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK-GAICAYLETW 240
+GG+G + +RS GS ++ T GRS G+IP ++V+N +NQG +R+ G+I +LE W
Sbjct: 239 SGGIGLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPW 298
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HM+I +F+ELRKNTG + R D+ A+W+ DLFM+RV W+LF P L + +G
Sbjct: 299 HMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWG 358
Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
+EF Y YE + A LW+ I+ ETG P++ +KDACN S QQH
Sbjct: 359 EEFNALYCKYEKTISR------TVVPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQH 412
Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
+G I SSNLC EI +S E VCNL SI L + +K+G D ++ ++I L+ V
Sbjct: 413 LGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKILTVNLNRV 472
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
ID NYY V++A+ SN+R+RP+G+G+ G D I+++ + S A E + Y A
Sbjct: 473 IDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFEAMYYSAM 532
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS ELAE++G + SY+GS +GI +L ++ + +W+ LR RI
Sbjct: 533 EASCELAEKEGPFPSYEGSPISKGIF---HFELAGRKASGNW---------DWEGLRERI 580
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
++ G+RNS +A+ PTA S I G + + EP N++ + +GEF +N++LV +L +
Sbjct: 581 RRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRL 640
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW M + +G++ I+ IP ++R+IY TA+EI +I+ + RQ ++DQSQSL
Sbjct: 641 GLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSL 700
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRS 692
NI+I+ + +L + + GLKT YYLR+
Sbjct: 701 NIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRT 733
>sp|Q7T6Y8|RIR1_MIMIV Ribonucleoside-diphosphate reductase large subunit OS=Acanthamoeba
polyphaga mimivirus GN=RNR1 PE=3 SV=2
Length = 881
Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/651 (38%), Positives = 365/651 (56%), Gaps = 25/651 (3%)
Query: 73 ERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLS 132
+RD G + L Y I +E PQ FMR+A+ L +++ ++ + Y LS
Sbjct: 205 DRDYNLTIFGFRTLEKSYLKRINKKIVERPQHLFMRVAITLHYRKNDLDRI-FETYKYLS 263
Query: 133 SFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQV 192
F +TPTLFN+GT QLSSC+L + D L I E KE AL+SK+AGG+G T +
Sbjct: 264 KGYFTHATPTLFNAGTTHEQLSSCFLLGIGDSLEEISECWKECALISKHAGGIGIHMTNI 323
Query: 193 RSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRK 252
R G+ I T G + G + L + ND++ NQGGKR G+ ++E WH DI F++L+K
Sbjct: 324 RVEGAYIASTQGEAGG-LRVLTIFNDISRYANQGGKRPGSFAIFIEPWHGDIFFFLDLKK 382
Query: 253 NTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYEN 312
NTG + R D+ + + + D+FM+RV K W+L P P+L NK+G EF + Y+ YE+
Sbjct: 383 NTGAETERARDLFLGLMINDIFMERVYKDDVWSLMCPSQCPNLLNKYGDEFTKEYLKYES 442
Query: 313 QTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTE 372
+ K+I A+ LW KI+ ETG P++ FKDA N +S Q ++G+++ SNLC E
Sbjct: 443 EGIY-----LKQIRAIDLWFKIMESQIETGVPYVMFKDAINDKSNQINIGVVNGSNLCCE 497
Query: 373 ITLNTSKNEIGVCNLGSINLTLHMKNGKLDPI----KLKKTIRIAMRMLDNVIDINYYAV 428
I + KN VCNL SI L +K P KL K RI R L+N+IDIN+Y +
Sbjct: 498 IVEVSDKNNFSVCNLSSICLPRFVKIIDEVPTFNYQKLFKISRILTRNLNNIIDINFYPL 557
Query: 429 KKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAE 488
K + +NLR RP+G+G+ G D + K P+ S+ A + E I Y A S +LA
Sbjct: 558 DKTRITNLRDRPIGIGVQGLADVFAMFKTPFDSEIARDLNRKIFETIYYGALTESNKLAR 617
Query: 489 EKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNS 548
E G Y +Y GS QG D + K +S +W+ LR I G+RNS
Sbjct: 618 EFGTYQTYQGSPISQGKFQFDLWN---------FDKSQLSGMWDWELLRQEILNHGVRNS 668
Query: 549 NCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMI 608
PTA+ S I+G + IEP N++ +S ++GE+ IN++L+K+L + G+W+ M+
Sbjct: 669 LVTTCMPTASTSQIMGWNECIEPYTENIYSRSTMAGEYFVINKHLIKDLIELGVWNSEMV 728
Query: 609 ANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKS 668
+KY+ G+++ I IPD+++ IY T +EI IIE + R ++DQ+QS+N+YI S
Sbjct: 729 DLIKYYKGSVANIPNIPDNIKAIYRTVWEIPQKSIIEMAADRAPFVDQTQSMNLYIDKPS 788
Query: 669 GKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIK 718
+L+ AW +GLKT YYLRS A+ A + GID + EI K
Sbjct: 789 FARLNSCLFYAWRKGLKTGMYYLRSKPASSAN----QFGIDIDKIKEIESK 835
>sp|O83972|RIR1_TREPA Ribonucleoside-diphosphate reductase subunit alpha OS=Treponema
pallidum (strain Nichols) GN=nrdA PE=3 SV=1
Length = 845
Score = 358 bits (919), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 232/727 (31%), Positives = 373/727 (51%), Gaps = 91/727 (12%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
++ P + + ARLLM G +++++I Y E + G+ + +
Sbjct: 165 QEAPQWELIAARLLMLDFSL-ALGTSLEKLNIHSFY-EKITYLEEAGLYGVYIRTHYSRA 222
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEG-IRIEMPQFFFMRIAMGLSLNES-N 119
+ + L RD F Y L ++ RY + + +E PQ F+ IA+ L++NE+ +
Sbjct: 223 EIEEAATYLECSRDKLFTYSSLDMILRRYVIRTRAHVPLETPQEMFLGIALHLAMNETQD 282
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY +LS +TPTL N+ QLSSC++ TVPD L GI+ SI + +S
Sbjct: 283 RMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFVDTVPDSLDGIYRSIDNFSQVS 342
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
K+ GG+G + +VR++G+PI+G G + G++ ++K+ ND AVAV+Q G R+G++ YL+
Sbjct: 343 KFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLANDTAVAVDQLGVRQGSVAVYLDV 402
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK--STWTLFSPYDVPD--- 294
WH DI EF++LR N GDDR + HD+ A+ PDLF K V ++W L P+++
Sbjct: 403 WHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNLGASWYLMCPHEILTVKG 462
Query: 295 --LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
L + + +E+E+ Y ++ K + I L R +L + ETG P+ ++D
Sbjct: 463 YALEDFYAEEWEKRYWDCVKDARISK----RTIPIKELVRLVLKSVVETGTPFAFYRDHA 518
Query: 353 NIRSPQQHVGIIHSSNLCTEITLN-----------------------TSKNEIGVCNLGS 389
N +P H GII+ SNLCTEI N T + VCNL S
Sbjct: 519 NRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKVVVQTTRPGDFVVCNLAS 578
Query: 390 INLT-LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGF 448
+ L+ + + + K +L++ +R+A+R LDNVID+ YY V A+ +N +R +GLG+ G+
Sbjct: 579 LVLSNIDLSDDK----ELREVVRVAVRALDNVIDLTYYPVPYAQVTNAYYRAIGLGVSGY 634
Query: 449 QDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQ 508
L I + S E + FAD+ E I A AS +A EKG Y + GS W G
Sbjct: 635 HHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKGAYGCFTGSDWCTG---- 690
Query: 509 DSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSAS 568
Y + S +W++L+ + GMRN +A+APT++ S I G +A
Sbjct: 691 ------------AYFRKRGYVSEDWQRLQREVATHGMRNGYLLAVAPTSSTSIIAGTTAG 738
Query: 569 IEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDL 628
++P + +Y ++E KKG+ + +LSQ + P
Sbjct: 739 VDPI----------------MKQYFLEE--KKGML-------MPRVAPSLSQKT-CP--- 769
Query: 629 RKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNK-SGKKLDETYKLAWLRGLKTT 687
+Y +A + W I A +RQ+ IDQ+QS+N+YI+ + K++ + Y AW G+K+
Sbjct: 770 --LYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFTLKQVLDLYVYAWEVGMKSL 827
Query: 688 YYLRSIS 694
YY+RS S
Sbjct: 828 YYVRSQS 834
>sp|Q6R7H4|RIR1_OSHVF Ribonucleoside-diphosphate reductase large subunit OS=Ostreid
herpesvirus 1 (isolate France) PE=3 SV=1
Length = 835
Score = 340 bits (873), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 218/669 (32%), Positives = 351/669 (52%), Gaps = 52/669 (7%)
Query: 74 RDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS-LNESNREKCAIKFYNLLS 132
RD NY+G+ L + + + E PQ+ FMR+AM ++ L+ + + Y L+S
Sbjct: 155 RDYSHNYMGITGLLNGVAIKVNKKLYERPQYVFMRVAMAMTDLSSETALEDIWQTYMLIS 214
Query: 133 SFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQV 192
++P LFN GT S +SC+L + D++ I + + + L GG+G +++++
Sbjct: 215 GQCLSMASPVLFNGGTSSSNTASCFLLDMGDNMVSITKKVAQTMTLIAKNGGIGINFSKL 274
Query: 193 RSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQG-GKRKGAICAYLETWHMDIEEFIELR 251
R+ GS I G G+S G+ L + + VA +V+QG KR GAI YL WH D+ +++ R
Sbjct: 275 RATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQGENKRPGAIAGYLTDWHADMYDWLYSR 333
Query: 252 -KNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILY 310
+G++ + H +N+ + + DLFM+RV W+LFSP DV L +G++F +Y +
Sbjct: 334 YSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLFSPNDVVGLEELYGEKFVRAYRAH 393
Query: 311 ENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLC 370
E K+ + +SA L+ I +M++ TG P+I FKDA N RS +H+G I +SNLC
Sbjct: 394 EANPKIKRTT----VSARKLFSDIANMMWSTGEPYILFKDAVNERSNHKHLGTIKNSNLC 449
Query: 371 TEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAV 428
EI NEI VCNL +I ++ ++++ G++D + +A + ++N+ID Y +
Sbjct: 450 CEIVQYCDTNEIAVCNLATICVSNFVNVETGEIDFEGIADAAGVACKGINNLIDKQNYDL 509
Query: 429 KKAK----------------------------YSNLRHRPVGLGIMGFQDCLHIMKIPYS 460
+ YSNL+HRP G+G+ G D +KIPY
Sbjct: 510 GNEQLMRLADERTEEVVEVNGIKFDAKYNLVSYSNLKHRPQGIGMQGLHDVFMKLKIPYD 569
Query: 461 SKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSY--DGSLWDQGILPQDSLKLLEKER 518
S+ A + A E I Y A S ++AEEKG Y SY D + +G L D L+ +++R
Sbjct: 570 SEMAFRLAALIQEAIYYGAVRESVKIAEEKGPYPSYYWDNNTHREGKLQFDFLEGFDRDR 629
Query: 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHI 578
+ E NW+++ + +KFG+ NS A P+A+ S + SIE N
Sbjct: 630 DLTH------ELFNWREVLKKFEKFGINNSVVTAQPPSASSSQLNDNVESIEAITSNRFT 683
Query: 579 KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI 638
K G+F IN++L K+L+ G+WD M+ +++ DG++ I RIP ++R+IY TA EI
Sbjct: 684 KGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEANDGSIQNIERIPKNIREIYKTAREI 743
Query: 639 SPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLD---ETYKLAWLRGLKT-TYYLRSIS 694
+++ + Q +IDQ+ S N+++ + E L LKT YY R I
Sbjct: 744 DHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQLIMENVILGHKMKLKTGMYYTRGIP 803
Query: 695 ANYAKKSNF 703
A K+ NF
Sbjct: 804 A--MKQQNF 810
>sp|P0C8H9|RIR1_ASFWA Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-055 PE=3 SV=1
Length = 778
Score = 325 bits (832), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 230/730 (31%), Positives = 364/730 (49%), Gaps = 80/730 (10%)
Query: 7 YSQVTARLLMYCIQKEV---FGKEIKQ-------------IDIPIKYKEYFSKFINKGID 50
YS + ARL +Y + + F K ++ +D+ KYK F +I
Sbjct: 51 YSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFVDVVYKYKAIFDSYI----- 105
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRI 109
++N RD + + LG++ + + Y L + +G+ +E PQ +MR+
Sbjct: 106 ---------DYN-----------RDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRV 145
Query: 110 A-MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGI 168
A M + + K + Y+LLS ++PT+FN+GT + QLSSC+L V D+L +
Sbjct: 146 AIMIYGMGKVVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNVNDNLENL 205
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ +K ++S GG+G + +R+ S I G+ RS G+ ++ + N NQGG
Sbjct: 206 YDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGL 265
Query: 229 RKGAICAYLETWHMDIEEFIE---LRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK---- 281
R GA YLE WH DI F+E L+ + R ++ +WVPDLFM+ + +
Sbjct: 266 RPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 325
Query: 282 --STWTLFSPYDVPDLHNKFG----------KEFEESYILYENQTKLGKIKLFKKISALY 329
W LFSP P+LH F +EF++ Y Y + + + K+I +
Sbjct: 326 GDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEI--IK 383
Query: 330 LWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL---NTSKNEIGVCN 386
W K + + G+P+I FKDA N +S HVG I +SNLC E+T+ K E GVCN
Sbjct: 384 AWFKT---VIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCN 440
Query: 387 LGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIM 446
L ++NL ++ D L + LDN+ID YY + + SN+RHRP+G+G+
Sbjct: 441 LAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVF 500
Query: 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYY-AYYASTELAEEKGRYSSYDGSLWDQGI 505
G D +KI + S EAI D+++ YY A S ELA+EKG + S+ GS +G+
Sbjct: 501 GLADVFASLKIKFGSPEAIAM-DEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGL 559
Query: 506 LPQD------SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATI 559
L D L +ER ++ + ++ +W++LR + G+RN A+ PTAT
Sbjct: 560 LQPDLWVRCGDLIPSWEERVAQTTQGVLTRK-SWRQLRLAAIQ-GVRNGYLTALMPTATS 617
Query: 560 SNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLS 619
SN G + EP NL+ + LSGEF +N+YL+ +LK+ LW E++ L G++
Sbjct: 618 SNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQ 677
Query: 620 QISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLA 679
I IP ++R Y T+ E++ + + + R ++ QS SLN Y ++ L
Sbjct: 678 HILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLG 737
Query: 680 WLRGLKTTYY 689
W +GL T Y
Sbjct: 738 WKKGLTTGSY 747
>sp|P0C8H8|RIR1_ASFP4 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-057 PE=3 SV=1
Length = 778
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 229/730 (31%), Positives = 362/730 (49%), Gaps = 80/730 (10%)
Query: 7 YSQVTARLLMYCIQKEV---FGKEIKQ-------------IDIPIKYKEYFSKFINKGID 50
YS + ARL +Y + + F K ++ +D+ KYK F +I+
Sbjct: 51 YSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFVDVVYKYKAIFDSYIDY--- 107
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRI 109
RD + + LG++ + + Y L + +G+ +E PQ +MR+
Sbjct: 108 ----------------------SRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRV 145
Query: 110 A-MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGI 168
A M + + K + Y+LLS ++PT+FN+GT + QLSSC+L V D+L +
Sbjct: 146 AIMIYGMGKVVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNVNDNLENL 205
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ +K ++S GG+G + +R+ S I G+ RS G+ ++ + N NQGG
Sbjct: 206 YDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGL 265
Query: 229 RKGAICAYLETWHMDIEEFIE---LRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK---- 281
R GA YLE WH DI F+E L+ + R ++ +WVPDLFM+ + +
Sbjct: 266 RPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 325
Query: 282 --STWTLFSPYDVPDLHNKFG----------KEFEESYILYENQTKLGKIKLFKKISALY 329
W LFSP P+LH F +EF++ Y Y + + + K+I +
Sbjct: 326 GDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEI--IK 383
Query: 330 LWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL---NTSKNEIGVCN 386
W K + + G+P+I FKDA N +S HVG I +SNLC E+T+ K E GVCN
Sbjct: 384 AWFKT---VIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCN 440
Query: 387 LGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIM 446
L ++NL ++ D L + LDN+ID YY + + SN+RHRP+G+G+
Sbjct: 441 LAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVF 500
Query: 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYY-AYYASTELAEEKGRYSSYDGSLWDQGI 505
G D +KI + S EAI D+++ YY A S ELA+EKG + S+ GS +G+
Sbjct: 501 GLADVFASLKIKFGSPEAIAM-DEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGL 559
Query: 506 LPQD------SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATI 559
L D L +ER ++ + ++ +W++LR + G+RN A+ PTAT
Sbjct: 560 LQPDLWVRCGDLIPSWEERVAQTTQGVLTRK-SWRQLRLAAIQ-GVRNGYLTALMPTATS 617
Query: 560 SNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLS 619
SN G + EP NL+ + LSGEF +N+YL+ +LK+ LW E++ L G++
Sbjct: 618 SNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQ 677
Query: 620 QISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLA 679
I IP ++R Y T+ E++ + + + R ++ QS SLN Y ++ L
Sbjct: 678 HILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLG 737
Query: 680 WLRGLKTTYY 689
W +GL T Y
Sbjct: 738 WKKGLTTGSY 747
>sp|P0C8H7|RIR1_ASFK5 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-057
PE=3 SV=1
Length = 779
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 229/730 (31%), Positives = 358/730 (49%), Gaps = 80/730 (10%)
Query: 7 YSQVTARLLMYCIQK-------EVFGKEIKQ---------IDIPIKYKEYFSKFINKGID 50
YS + ARL +Y + + E + Q +D+ KYK F +I+
Sbjct: 52 YSTLAARLSVYLLHQSTASSFSEAVSLQAAQSCSRLSPQFVDVVYKYKAIFDSYIDY--- 108
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRI 109
RD + LG++ + + Y L + +G+ +E PQ +MR+
Sbjct: 109 ----------------------SRDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRV 146
Query: 110 A-MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGI 168
A M + K + Y+LLS ++PT+FN+GT + QLSSC+L V D+L +
Sbjct: 147 AIMIYGMGRVVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENL 206
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ +K ++S GG+G + +R+ S I G+ RS G+ ++ + N NQGG
Sbjct: 207 YDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGL 266
Query: 229 RKGAICAYLETWHMDIEEFIE---LRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK---- 281
R GA YLE WH DI F++ L+ + R ++ +WVPDLFM+ + +
Sbjct: 267 RPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDR 326
Query: 282 --STWTLFSPYDVPDLHNKFG----------KEFEESYILYENQTKLGKIKLFKKISALY 329
TW LFSP P+LH F +EF + Y Y + + + K+I +
Sbjct: 327 GDGTWYLFSPDQAPNLHKVFDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAKEI--IK 384
Query: 330 LWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL---NTSKNEIGVCN 386
W K + + G+P+I FKDA N +S HVG I +SNLC EIT+ S+ E GVCN
Sbjct: 385 EWFKT---VIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCN 441
Query: 387 LGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIM 446
L ++NL ++ D L + LDN+ID YY + + SN+RHRP+G+G+
Sbjct: 442 LAAVNLAAFIRENSYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVF 501
Query: 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYY-AYYASTELAEEKGRYSSYDGSLWDQGI 505
G D K+ + S EAI D+++ YY A S ELA+EKG + S+ GS +G+
Sbjct: 502 GLADVFASFKMKFGSPEAIAM-DEAIHAALYYGAMRRSVELAKEKGSHPSFPGSAASKGL 560
Query: 506 LPQ------DSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATI 559
L D L +ER ++ + ++ W +LR + G+RN A+ PTAT
Sbjct: 561 LQPDLWVRCDDLVFSWEERVAQTTQGVLTPK-KWWQLRLAAMQ-GVRNGYLTALMPTATS 618
Query: 560 SNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLS 619
SN G + EP NL+ + LSGEF +N+YL+ +LK+ LW E++ L G++
Sbjct: 619 SNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQ 678
Query: 620 QISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLA 679
I IP ++R+ Y T+ E++ + + + R ++ QS SLN Y ++ L
Sbjct: 679 HILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLG 738
Query: 680 WLRGLKTTYY 689
W +GL T Y
Sbjct: 739 WKKGLTTGSY 748
>sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-045 PE=3 SV=1
Length = 778
Score = 323 bits (829), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 229/730 (31%), Positives = 364/730 (49%), Gaps = 80/730 (10%)
Query: 7 YSQVTARLLMYCIQKEV---FGKEIKQ-------------IDIPIKYKEYFSKFINKGID 50
YS + ARL +Y + + F K ++ +D+ KYK F +I
Sbjct: 51 YSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFVDVVYKYKAIFDSYI----- 105
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRI 109
++N RD + + LG++ + + Y L + +G+ +E PQ +MR+
Sbjct: 106 ---------DYN-----------RDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRV 145
Query: 110 A-MGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGI 168
A M + + K + Y+LLS ++PT+FN+GT + QLSSC+L V D+L +
Sbjct: 146 AIMIYGMGKVVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENL 205
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ +K ++S GG+G + +R+ S I G+ RS G+ ++ + N NQGG
Sbjct: 206 YDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGL 265
Query: 229 RKGAICAYLETWHMDIEEFIE---LRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK---- 281
R GA YLE WH DI F++ L+ + R ++ +WVPDLFM+ + +
Sbjct: 266 RPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 325
Query: 282 --STWTLFSPYDVPDLHNKFG----------KEFEESYILYENQTKLGKIKLFKKISALY 329
TW LFSP P+LH F +EF++ Y Y + + + K+I +
Sbjct: 326 GDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEI--IK 383
Query: 330 LWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL---NTSKNEIGVCN 386
W K + + G+P+I FKDA N +S HVG I +SNLC E+T+ K E GVCN
Sbjct: 384 EWFKT---VIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCN 440
Query: 387 LGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIM 446
L ++NL ++ D L + LDN+ID YY + + SN+RHRP+G+G+
Sbjct: 441 LAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVF 500
Query: 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYY-AYYASTELAEEKGRYSSYDGSLWDQGI 505
G D +K+ + S EAI D+++ YY A S ELA+EKG + S+ GS +G+
Sbjct: 501 GLADVFASLKMKFGSPEAIAM-DEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGL 559
Query: 506 LPQD------SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATI 559
L D L +ER ++ + ++ +W +LR + G+RN A+ PTAT
Sbjct: 560 LQPDLWVRCGDLSSSWEERVAQTTQGVLTRK-SWWQLRLAAMQ-GVRNGYLTALMPTATS 617
Query: 560 SNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLS 619
SN G + EP NL+ + LSGEF +N+YL+ +LK+ LW E++ L G++
Sbjct: 618 SNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGGSIQ 677
Query: 620 QISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLA 679
I IP ++R Y T+ E++ + + + R ++ QS SLN Y ++ L
Sbjct: 678 HILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLG 737
Query: 680 WLRGLKTTYY 689
W +GL T Y
Sbjct: 738 WKKGLTTGSY 747
>sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-053 PE=3 SV=1
Length = 779
Score = 316 bits (810), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 224/730 (30%), Positives = 359/730 (49%), Gaps = 80/730 (10%)
Query: 7 YSQVTARLLMYCIQKEV---FGKEIKQ-------------IDIPIKYKEYFSKFINKGID 50
YS + ARL +Y + + F K + +D+ KYK F +I+
Sbjct: 52 YSTLAARLSVYLLHQSTASSFSKAVSLQAAQSCSRLSSHFVDVVYKYKAIFDSYIDY--- 108
Query: 51 NKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFL-HIEGIRIEMPQFFFMRI 109
RD + + LG++ + + Y L + +G+ +E PQ +MR+
Sbjct: 109 ----------------------SRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRV 146
Query: 110 AMGL-SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGI 168
A+ + + K + Y+LLS ++PT+FN+GT + QLSSC+L V D+L +
Sbjct: 147 AIMIHGMGRVVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENL 206
Query: 169 FESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGK 228
++ +K ++S GG+G + +R+ S I G+ RS G+ ++ + N NQGG
Sbjct: 207 YDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGL 266
Query: 229 RKGAICAYLETWHMDIEEFIE---LRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK---- 281
R GA YLE WH DI F++ L+ + R ++ +WVPDLFM+ + +
Sbjct: 267 RPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 326
Query: 282 --STWTLFSPYDVPDLHNKFG----------KEFEESYILYENQTKLGKIKLFKKISALY 329
TW LFSP P+LH F +EF++ Y Y + + + K+I +
Sbjct: 327 GDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEI--IK 384
Query: 330 LWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL---NTSKNEIGVCN 386
W K + + G+P+I FKDA N +S HVG I +SNLC EIT+ ++ E GVCN
Sbjct: 385 EWFKT---VVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQGVCN 441
Query: 387 LGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIM 446
L ++NL ++ D L + LDN+ID YY + + SN+RHRP+G+G+
Sbjct: 442 LAAVNLAAFIRESSYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVF 501
Query: 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYY-AYYASTELAEEKGRYSSYDGSLWDQGI 505
G D +K+ + S EAI D+++ YY A S ELA+EKG + S+ GS +G+
Sbjct: 502 GLADVFASLKMKFGSPEAIAI-DEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGL 560
Query: 506 LPQD------SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATI 559
L D L + R ++ + ++ W+ I+ G+RN A+ PTAT
Sbjct: 561 LQPDLWVRCGDLIPSWENRVAQTTQGVLTPKKWWQLRLAAIQ--GVRNGYLTALMPTATS 618
Query: 560 SNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLS 619
SN G + EP NL+ + LSGEF +N+YL+ +L++ LW E + L G++
Sbjct: 619 SNSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQQLLNAGGSIQ 678
Query: 620 QISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLA 679
I IP ++R+ Y T+ E++ + + + R ++ QS SLN Y ++ L
Sbjct: 679 HILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLG 738
Query: 680 WLRGLKTTYY 689
W +GL T Y
Sbjct: 739 WKKGLTTGSY 748
>sp|P74240|RIR1_SYNY3 Ribonucleoside-diphosphate reductase subunit alpha OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=nrdA PE=3 SV=1
Length = 767
Score = 305 bits (782), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 216/724 (29%), Positives = 354/724 (48%), Gaps = 88/724 (12%)
Query: 4 DPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYF----SKFINKGIDNKLLNPKLA 59
+P + V RL ++ + K+ + Q Y +Y +K N D+++L +
Sbjct: 99 EPDWRYVAGRLHVWSLWKDTLVRRGYQ------YGQYLRTVQTKVTNGEYDSRILT--YS 150
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES- 118
E L + + D ++Y G +L RY L E +PQ + A+ L+ E+
Sbjct: 151 EGELQEAGCWINSDWDTDYDYAGAVLLTSRYLLPNE-----LPQEALLTCALLLASVEAP 205
Query: 119 -NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
R + A +FY +++ +TP L N L+SC++ + D+L IF I A
Sbjct: 206 DRRLQWARRFYESIAARRISLATPILANLRVPGGSLTSCFIVAMEDNLESIFGEITNAAR 265
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
+SK GG+G + +++R+ GS + G S GVIP+ K++ND A+AVNQGG+R GA+ L
Sbjct: 266 ISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVNQGGRRAGAVTVGL 325
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP---- 293
+ WH+D+ EF+E++ GD RR+ +D+ + +PD FM+RVI K WTL PY+V
Sbjct: 326 DVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILPDEFMRRVINKEDWTLVDPYEVREKMG 385
Query: 294 -DLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
+L +G++FE +Y E+ I L+K+I+A L+++I+ ETG P+++FKD
Sbjct: 386 IELAELWGEQFEGAYREIESNLDT-TITLYKRINARELFKQIMRTQVETGMPYLSFKDTI 444
Query: 353 NIRSPQQHVGIIHSSNLCTEITLN-TSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
N +P +H+G I +NLC E N T + CNL S+NL LD + +
Sbjct: 445 NKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCCNLVSLNL------ANLDLQDIAGVSQ 498
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQS 471
IA+RMLDN I++ AK N ++R +G+G MG D L ++ Y I ++
Sbjct: 499 IAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGAMGLADWLAKRRLNYDELADI---NRL 555
Query: 472 MEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL 531
E I Y+ +S ELA+E+G Y ++ GS W +G LL + + + N ++
Sbjct: 556 FEEIGYWCTQSSMELAKERGAYPAFPGSDWQKG--------LLIGSKPVSWFQANAAKPE 607
Query: 532 NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINR 591
W+KL N I+ G+RNS+ AIAP + S + G +ASI P Y +R
Sbjct: 608 RWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTASILPVY----------------SR 651
Query: 592 YLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651
+ + W + + F GN Y + +++A + Q
Sbjct: 652 FFYDK------WAKGTVPIAPPFIGNCFW----------FYPENKTMDQRKVVKAVAAIQ 695
Query: 652 KWIDQSQSLNIYISNKSG-------------KKLDETYKLAWLRGLKTTYYLRSISANYA 698
+W D S+ + + +G K + +T +AW G K YY+R++ +
Sbjct: 696 QWTDTGISMELLFNLNAGIYFPEEPERSLNAKDIFDTLVMAWEAGCKAIYYIRTVQKDDF 755
Query: 699 KKSN 702
K S+
Sbjct: 756 KDSS 759
>sp|P57276|RIR1_BUCAI Ribonucleoside-diphosphate reductase subunit alpha OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=nrdA PE=3 SV=1
Length = 761
Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 218/718 (30%), Positives = 333/718 (46%), Gaps = 88/718 (12%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFIN--KGIDNKLLNPKLA 59
+ P Y + ARL ++ ++K+ +G Q + P Y ++ K ++ K +N L N
Sbjct: 72 QDTPDYQYMAARLAIFHLRKKAYG----QFEPPKLY-DHVKKMVDLEKYDENLLKNYSYK 126
Query: 60 EFNLSLLSNALLPE-RDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGL--S 114
EF L N+ + RD+ F+Y +K L +Y + + G E QF ++ I+ L
Sbjct: 127 EF---LQMNSFIDHWRDMNFSYAAVKQLEGKYLIQNRVNGKIYESAQFLYILISACLFSQ 183
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
++ R +FYN +S+F TP + T Q SSC L D L I +
Sbjct: 184 YPKNVRMNYIHRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLNSINATTSS 243
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
G+G + Q+R+LGSPI+ G IPF K + +QGG R GA
Sbjct: 244 IVKYVSQRAGIGVNAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCSQGGVRGGAAT 303
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
+ WH+++E + L+ N G + R ++ AI + L +R++ TLFSP DVPD
Sbjct: 304 IFYPIWHLEVESLLVLKNNRGIEENRVRHIDYAIQINKLMYQRMLSGDQITLFSPSDVPD 363
Query: 295 LHNKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
L+ F K+F++ Y+ YE + K K I AL L+ ++ TG ++ D
Sbjct: 364 LYKAFFSDQKKFKKIYLQYEKNKNIRK----KTIKALDLFSLMMQERTSTGRIYVQNVDH 419
Query: 352 CNIRSP-QQHVGIIHSSNLCTEITLNT--------SKNEIGVCNLGSINLTLHMKNGKLD 402
CN+ S + I SNLC EITL T + EI +C L + NL GK+
Sbjct: 420 CNLHSAFNPELSPIRQSNLCLEITLPTKSLNDVHDTDGEIALCTLSAFNL------GKIK 473
Query: 403 PIKLKKTIRI-AMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
+ K + I ++R LD ++D Y V AK S + R +G+G++ F L K+ YS
Sbjct: 474 SLDDFKELSILSVRALDEILDYQNYPVLAAKKSAISRRSLGIGVINFAYYLAKNKVRYSD 533
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
A ++ E + YY AS ELA+EKG S ++ + + G LP D+ K K
Sbjct: 534 GSAHNLTHKTFEAMQYYLLEASCELAKEKGACSLFNHTNYYLGKLPIDTYK--------K 585
Query: 522 YLK--VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIK 579
Y+ N L+W LR++IKK+G+RNS A+ P+ T S I + IEP + IK
Sbjct: 586 YIDDICNEPLHLDWNLLRSKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFISIK 645
Query: 580 SNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEIS 639
+ G I R +V E KK LR Y ++I
Sbjct: 646 VSKDG----ILRQVVPEYKK----------------------------LRLQYELLWDIP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI------YISNK-SGKKLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S+N +++NK K+L L++ GLKT YY
Sbjct: 674 NNTGYLQLAGIMQKFIDQSISVNTHYDPARFLNNKIPMKQLLYDLLLSYKLGLKTLYY 731
>sp|Q8K9W3|RIR1_BUCAP Ribonucleoside-diphosphate reductase subunit alpha OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=nrdA PE=3 SV=1
Length = 763
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 223/715 (31%), Positives = 331/715 (46%), Gaps = 82/715 (11%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLL-NPKLA 59
E P Y + ARL ++ ++K+ +G Q + P Y + K + G D KLL N
Sbjct: 72 ENTPDYQYMAARLAIFHLRKKAYG----QFEPPNLYY-HVKKMVQLGKYDEKLLQNYSFE 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGL--SL 115
E+ +++ + RD+ F+Y +K L +Y L + G E QF ++ I+ L
Sbjct: 127 EY--VEMNSFVDHRRDMNFSYAAVKQLEAKYLLQNRVTGQIYESAQFLYILISACLFSKY 184
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
+ R +FYN +S+F TP + T Q SSC L D+L I +
Sbjct: 185 EKKVRMNYIQRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIECADNLNSINATTSAI 244
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
G+G + Q+R+LGSPI+ G IPF K + +QGG R GA
Sbjct: 245 VKYVSQRAGIGINAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCSQGGVRGGAATV 304
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
+ WH++IE + L+ N G + R ++ A+ + L +R++ TLFSP DVP L
Sbjct: 305 FYPIWHLEIESLLVLKNNRGIEENRVRHLDYAVQINKLMYQRMLLGQKITLFSPSDVPKL 364
Query: 296 HNKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
+ F K+F+E YI YE + K K I+A+ L+ I+ TG +I D C
Sbjct: 365 YEFFFSDQKKFKEIYIKYEKNRNIRK----KSINAIDLFCLIMRERASTGRIYIQHVDHC 420
Query: 353 NIRSP-QQHVGIIHSSNLCTEITLNT-------SKN-EIGVCNLGSINLTLHMKNGKLDP 403
N S + I SNLC EITL T KN EI +C L ++NL L D
Sbjct: 421 NSHSAFNSKLATIRQSNLCLEITLPTKPLNNIDDKNGEIALCTLSALNLGLIN-----DL 475
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
LK+ +++R LD +++ Y V AK S + R +G+G++ F L K+ YS
Sbjct: 476 HDLKELSTLSVRALDEILEYQNYPVVCAKKSAISRRSLGIGVINFAYYLAKNKVRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+EKG S ++ + + G P D+ K K+ S
Sbjct: 536 AKNLTHKTFEAIQYYLLKASCELAKEKGSCSLFNQTNYYLGKFPIDTYK---KDIDS--- 589
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
N LNW LR +IKK+G+RNS A+ P+ T S I + IEP + IKS+
Sbjct: 590 ICNEPLHLNWNLLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFISIKSSKD 649
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
G R +V E KK L+ Y +EI PN I
Sbjct: 650 GML----RQVVPEYKK----------------------------LKSEYELLWEI-PNNI 676
Query: 644 --IEAGSVRQKWIDQSQSLNI------YISNK-SGKKLDETYKLAWLRGLKTTYY 689
+E ++ QK++DQS S N +++ K K+L +A+ G+KT YY
Sbjct: 677 GYLELVAIMQKFVDQSISANTNYDPKRFLNEKIPMKQLIYDLLVAYKLGIKTLYY 731
>sp|Q89AS4|RIR1_BUCBP Ribonucleoside-diphosphate reductase subunit alpha OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=nrdA PE=3 SV=1
Length = 761
Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 219/715 (30%), Positives = 332/715 (46%), Gaps = 82/715 (11%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLN--PKLA 59
E P Y + ARL ++ ++K+ FG Q + P Y + + D LLN PK
Sbjct: 72 ENSPDYQYMAARLTIFHLRKKAFG----QFNPPNLYDHVKNMIKLEKYDQHLLNDYPK-Q 126
Query: 60 EFNLSLLSNALLPER-DLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLN 116
+F L+ N+ + R D+ F+Y +K L +Y + + E QF ++ I+ L
Sbjct: 127 DF---LIMNSFIKHRRDMNFSYAAVKQLEGKYLIQNRVTKKIYESAQFLYILISACLFSK 183
Query: 117 ESN--REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
N R K FY+ +S+F TP + T Q SSC L D+L I +
Sbjct: 184 YPNETRMKYIKNFYDAISTFKISLPTPIMAGLRTPTRQFSSCVLIESEDNLNSINATTSA 243
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
G+G + ++R+LGSPI+ + G IPF K + +QGG R GA
Sbjct: 244 IVKYVSQRAGIGINAGRIRALGSPIRNGDTLHTGCIPFYKHFQSAVKSCSQGGVRGGAAT 303
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
+ WH +IE + L+ N G + R M+ ++ + L +R+I TLFSP DVP+
Sbjct: 304 IFYPIWHFEIESLLVLKNNRGIEENRVRHMDYSVQLNKLMYQRLILGEHITLFSPSDVPN 363
Query: 295 LHNKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
L++ F ++FE YI YEN + K KK+ A YL+ ++ TG +I D
Sbjct: 364 LYDSFFNNQEKFERLYIKYENDKTIRK----KKVKASYLFSLMMQERTSTGRIYIQNVDH 419
Query: 352 CNIRSP-QQHVGIIHSSNLCTEITLNT-------SKN-EIGVCNLGSINLTLHMKNGKLD 402
CN S + I SNLC EITL T KN EI +C L +INL G L+
Sbjct: 420 CNSHSAFNPKIAPIRQSNLCLEITLPTKALQDVHDKNGEISLCTLSAINL------GSLN 473
Query: 403 PIK-LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461
+ L K + +R LD+V+D Y + AK S L R +G+G++ F L + YS
Sbjct: 474 NLNDLSKLSNLIVRALDSVLDYQEYPILSAKKSALSRRTLGIGVINFAYYLAKNGVRYSD 533
Query: 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSK 521
A ++ E I Y+ AS LA+EKG + + + +GILP D+ K E ++
Sbjct: 534 GSANNLTHRTFEAIQYHLLNASCVLAQEKGACHWFSHTNYYKGILPIDTYKKNVDEICNE 593
Query: 522 YLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
L L+W+ LR +IKK+G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 594 PLH------LDWELLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
G R +V E K+ N + IP++ T +
Sbjct: 648 KDGML----RQVVPEYKR--------------LKNNYELLWNIPNN------TGY----- 678
Query: 642 WIIEAGSVRQKWIDQSQSLN------IYISNK-SGKKLDETYKLAWLRGLKTTYY 689
++ S+ QK++DQS S N ++ +NK ++L A+ GLKT YY
Sbjct: 679 --LQLASIMQKFVDQSISANTNYDPKLFPNNKIPMQQLILDLLTAYKLGLKTLYY 731
>sp|P37426|RIR1_SALTY Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdA PE=3 SV=1
Length = 761
Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 210/718 (29%), Positives = 330/718 (45%), Gaps = 94/718 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ FG Q + P Y + K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAFG----QFEPPALY-HHVVKMVELGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + ++ +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F EFE Y+ YE+ + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP V + SNLC EI L N EI +C L + NL G + +
Sbjct: 422 THSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAIKTL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
++E L +W++LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEIS 639
DG L Q+ +PD L+ Y +E+
Sbjct: 648 K--------------------------------DGILRQV--VPDYEHLKDAYELLWEMP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY
Sbjct: 674 NNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY 731
>sp|P00452|RIR1_ECOLI Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Escherichia
coli (strain K12) GN=nrdA PE=1 SV=2
Length = 761
Score = 244 bits (622), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 208/718 (28%), Positives = 327/718 (45%), Gaps = 94/718 (13%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLE-DYTEEEF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + ++ +
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINAT---SSAIV 245
Query: 180 KYA---GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL G ++ +
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL------GAINNL 475
Query: 405 -KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS
Sbjct: 476 DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 536 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDL 587
Query: 524 KVNMSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+E L +W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKAS 647
Query: 582 LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD--DLRKIYATAFEIS 639
DG L Q+ +PD L Y +E+
Sbjct: 648 K--------------------------------DGILRQV--VPDYEHLHDAYELLWEMP 673
Query: 640 PN-WIIEAGSVRQKWIDQSQSLNI-YISNK--SGK----KLDETYKLAWLRGLKTTYY 689
N ++ + QK+IDQS S N Y ++ SGK +L + A+ G+KT YY
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYY 731
>sp|O53767|NRDZ_MYCTU Ribonucleoside-diphosphate reductase NrdZ OS=Mycobacterium
tuberculosis GN=nrdZ PE=2 SV=1
Length = 692
Score = 243 bits (619), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 166/623 (26%), Positives = 285/623 (45%), Gaps = 83/623 (13%)
Query: 67 SNALLPERD-LQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNRE--- 121
+ ALL RD L+ + + +L +RY LH E G E R A ++ E E
Sbjct: 97 AKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGS 156
Query: 122 --KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ A +F LL + F+ ++PTL NSGT L+ C++ + D L IF ++ + A L
Sbjct: 157 SRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQ 216
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
+ GG G ++ +R G + T G + G + FL++ + A V+ GG+R+GA A L+
Sbjct: 217 RAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDV 276
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
H DI +F+ + + + N+++ V D F++ V + L +P
Sbjct: 277 SHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVERNGLHRLVNP---------- 323
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
+ GKI ++ A L+ I G P + F D N +P
Sbjct: 324 ---------------RTGKI--VARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVP 366
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
G I ++N C E+ L ++ CNLGSINL + +G++D +L++ +A+R LD+
Sbjct: 367 GRGRIEATNPCGEVPLLPYES----CNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDD 422
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
VID++ Y + + R +GLG+MG + L + IPY S+EA++ A + M I A
Sbjct: 423 VIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAA 482
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
+ AS LAEE+G + ++ S R
Sbjct: 483 HTASRRLAEERGAFPAFTDS---------------------------------------R 503
Query: 540 IKKFG-MRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598
+ G RN+ ++APT TIS I G +A IEP + ++ + E+N + +
Sbjct: 504 FARSGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLAR 563
Query: 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQ 658
+G + + +IA + G + R+P ++R + TA EI+P W + + Q+ ++ +
Sbjct: 564 DRGFYRDELIAEIAQ-RGGVRGYPRLPAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAV 622
Query: 659 SLNIYI-SNKSGKKLDETYKLAW 680
S + + + + + Y AW
Sbjct: 623 SKTVNLPATATVDDVRAIYVAAW 645
>sp|P43754|RIR1_HAEIN Ribonucleoside-diphosphate reductase subunit alpha OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=nrdA PE=3 SV=1
Length = 756
Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 178/605 (29%), Positives = 281/605 (46%), Gaps = 44/605 (7%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFIN-KGIDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G D P Y ++ K + + D LL+ E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----HFDPPRLY-DHVKKLVRMEKYDQALLDDYTRE-EW 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGL--SLNESN 119
+ + RD+ F+Y +K L +Y + + G E QF ++ ++ L +
Sbjct: 129 DTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYLLVSASLFSKYPKET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R +FY+ S+F TP + T Q SSC L D L I +
Sbjct: 189 RLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDSLDSINATASAIVKYV 248
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
G+G + +R+LGS I+G G IPF K + +QGG R GA Y
Sbjct: 249 SQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQGGVRGGAATLYYPI 308
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH++ E + L+ N G + R M+ + + L +R+IK S TLFSP DVP L+ F
Sbjct: 309 WHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGSEITLFSPSDVPGLYEAF 368
Query: 300 ---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+FEE Y+ YE + K + + A+ ++ ++ TG +I D CN S
Sbjct: 369 FADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERASTGRIYIQNVDHCNTHS 424
Query: 357 P-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI-KL 406
P V + SNLC EI L N EI +C L + NL GK++ + +L
Sbjct: 425 PFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNL------GKIENLDEL 478
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
++ +A+R LD ++D Y V AK S+L R +G+G++ + L + YS A
Sbjct: 479 EELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSAND 538
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
++ E I YY AS LA+E+G ++ + + +GILP D+ K K L
Sbjct: 539 LTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYK--------KDLDSL 590
Query: 527 MSESL--NWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG 584
E L +W+ LR I++FG+RNS A+ P+ T S I + IEP ++ IK++ G
Sbjct: 591 TQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIKASKDG 650
Query: 585 EFTEI 589
++
Sbjct: 651 ILKQV 655
>sp|P78027|RIR1_MYCPN Ribonucleoside-diphosphate reductase subunit alpha OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=nrdE PE=3 SV=1
Length = 721
Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 167/609 (27%), Positives = 289/609 (47%), Gaps = 63/609 (10%)
Query: 108 RIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSG-TIRSQLSSCYLSTVPDDLY 166
R+ M + + A+K + + F +TPT N+G R + SCYL + D++
Sbjct: 127 RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNME 186
Query: 167 GIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQG 226
I +I LSK GG+ T +R G+PIK +S G+IP +K++ D NQ
Sbjct: 187 SIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKLLEDSFSYANQL 246
Query: 227 GKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTL 286
G+R+GA YL H D+ +F++ ++ D++ R +++ + +PD+ L
Sbjct: 247 GQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKNNEEMAL 306
Query: 287 FSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWI 346
FSPYDV + + K + + + YE K F I+A ++ + + FE+G+P+I
Sbjct: 307 FSPYDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVAELHFESGYPYI 364
Query: 347 TFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIG------------VCNLGSINLTL 394
F D N R+ H I SNLC+EI ++ +E CNLGS+N+
Sbjct: 365 LFDDTVNRRN--AHPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLNIAK 422
Query: 395 HMKNGKLDPIKLKKTIRIAMRMLDNVIDI-NYYAVKKAKYSNLRHRPVGLGIMGFQDCLH 453
M++G + + +++A+ LD V + N + N + +GLG M L
Sbjct: 423 AMESGP----EFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHGFLA 478
Query: 454 IMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSY------DGSLWDQGILP 507
+I Y+S EAI F + + Y+A+ AS+ELA EKG++ ++ DGS +D+ I
Sbjct: 479 TNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKYIKV 538
Query: 508 QDSLKLLEKERGSKYL---KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIG 564
+ + ER +V + NWK+L I+K G+ NS+ +AIAPT +IS +
Sbjct: 539 EPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISYLSS 598
Query: 565 VSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRI 624
+ S++P + E++K+G + + +
Sbjct: 599 CTPSLQPVVSPV-------------------EVRKEGRLGRIYVPAYQ-----------L 628
Query: 625 PDDLRKIYAT-AFEISPNWIIEAGSVRQKWIDQSQSLNIYISNK-SGKKLDETYKLAWLR 682
D Y A+E+ P II + Q+ +DQ+ SL +++++K + + L++ Y A+ +
Sbjct: 629 NKDSYPFYKDGAYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAFKK 688
Query: 683 GLKTTYYLR 691
G + YY+R
Sbjct: 689 GCSSIYYVR 697
>sp|Q6GZT8|RIR1_FRG3G Putative ribonucleoside-diphosphate reductase large subunit OS=Frog
virus 3 (isolate Goorha) GN=FV3-038R PE=3 SV=1
Length = 565
Score = 223 bits (568), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 157/557 (28%), Positives = 244/557 (43%), Gaps = 95/557 (17%)
Query: 155 SCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLK 214
SC+L VPD + G+ + E LS GG+ W VR G + +S G IPFL
Sbjct: 74 SCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVR-------GPSAKSCGTIPFLH 126
Query: 215 VVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLF 274
V+ A QG R+G+ AY+ H D+ EFI +R TGD R+ +++ + + D F
Sbjct: 127 TVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTF 186
Query: 275 MKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKI 334
M+ V + W L P K G + +SA LW +I
Sbjct: 187 MRCVERGENWDLVDP-------------------------KSGAVA--HTVSARELWERI 219
Query: 335 LSMLFETGHPWITFKDACN--IRSPQQHVGI-IHSSNLCTEITLNTSKNEIGVCNLGSIN 391
L F TG P++ F D N + + G+ I SNLC EI L T+ + VC L S+N
Sbjct: 220 LETRFRTGEPYLNFIDTANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVN 279
Query: 392 LTLHMKNGKLDPIKLKKTIRIAMRMLDNVID-------INYYAVKKAKYSNLRHRPVGLG 444
L + D + + + MLDNVI + +A S R +GLG
Sbjct: 280 LE------RYDEWRETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLG 333
Query: 445 IMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQG 504
MG+ L +IP+ S+EA++ I A A+ LA+E+G G
Sbjct: 334 AMGWARYLQKHRIPFDSEEAVRLTGIIFRGIKSAAVRATRALAKERGEAPDLTG------ 387
Query: 505 ILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIG 564
+G+RN++ +A+AP A + ++G
Sbjct: 388 --------------------------------------YGVRNAHLLAVAPNANSALLLG 409
Query: 565 VSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRI 624
S S+EP ++ G +N YL ++L+ GL E + ++ G++ I+ +
Sbjct: 410 TSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGLDTEEVWDSIVSNKGSVQHIAAL 469
Query: 625 PDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKK-LDETYKLAWLRG 683
PD L+K+Y T+FE+ I+ + RQ+ + Q QSLN++ + K L + ++LAW G
Sbjct: 470 PDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFPIGADKTNLSDVHRLAWKSG 529
Query: 684 LKTTYYLRSISANYAKK 700
K YYLR+ + K
Sbjct: 530 CKGLYYLRTCAGRTGHK 546
>sp|P32282|RIR1_BPT4 Ribonucleoside-diphosphate reductase subunit alpha
OS=Enterobacteria phage T4 GN=NRDA PE=3 SV=1
Length = 754
Score = 223 bits (567), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 179/602 (29%), Positives = 286/602 (47%), Gaps = 38/602 (6%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEF 61
++P Y V AR LM+ ++K V+G+ P + ++ S +N G D +LL+ AE
Sbjct: 71 EEPDYQYVAARCLMFALRKHVYGQYE-----PRSFIDHISYCVNAGKYDPELLSKYSAE- 124
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLNES- 118
++ L + + ERD++F Y G L ++Y + G E PQF FM I M L +E
Sbjct: 125 EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAFMTIGMALHQDEPV 184
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALL 178
+R K I+FY +S+ TP + T Q SSC + D L I K +A +
Sbjct: 185 DRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSLKSIN---KASASI 241
Query: 179 SKY---AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
+Y G+G + +R+ GS I R GVIPF K + +QGG R GA A
Sbjct: 242 VEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQGGIRGGAATA 301
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV-PD 294
Y WH+++E + L+ N G + R M+ + + DL M+R K TLFSP+++ +
Sbjct: 302 YYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYITLFSPHEMGGE 361
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L+ + K+ + LYE K I+ K+I A L+ +++ T ++ F D N
Sbjct: 362 LYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARIYVQFIDNTNN 420
Query: 355 RSP-QQHVGIIHSSNLCTEITL-----NTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKK 408
+P + I SNLC EI + N+ EIG+C L + L D K+ +
Sbjct: 421 YTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLD---NFDWQDQDKINE 477
Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
+ +R LDN++D Y V +A+ + R R +G+G+ + L Y ++A
Sbjct: 478 LAEVQVRALDNLLDYQGYPVPEAEKAKKR-RNLGVGVTNYAAWLASNFASY--EDANDLT 534
Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSL-KLLEKERGSKYLKVNM 527
+ E + Y AS +LA+EKG Y + W +G LP D K +++ KY+
Sbjct: 535 HELFERLQYGLIKASIKLAKEKGPSEYYSDTRWSRGELPIDWYNKKIDQIAAPKYV---- 590
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
+W LR +K FG+RNS A+ P + S + + EP + +K + G F
Sbjct: 591 ---CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGYEPPRGPVSVKESKEGSFN 647
Query: 588 EI 589
++
Sbjct: 648 QV 649
>sp|P47473|RIR1_MYCGE Ribonucleoside-diphosphate reductase subunit alpha OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=nrdE PE=3 SV=1
Length = 721
Score = 222 bits (566), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 170/587 (28%), Positives = 282/587 (48%), Gaps = 75/587 (12%)
Query: 136 FMCSTPTLFNSG-TIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRS 194
F +TPT N+G R + SCYL + D++ I +I LSK GG+ + +R
Sbjct: 155 FQPATPTFLNAGRKKRGEFVSCYLLRIEDNMESIGRAITTTLQLSKRDGGVALLLSNLRE 214
Query: 195 LGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNT 254
G+PIK +S G+IP +K++ D NQ G+R+GA YL H D+ +F++ ++
Sbjct: 215 AGAPIKKIENQSSGIIPIMKLLEDSFSYSNQLGQRQGAGAVYLHCHHPDVMQFLDTKREN 274
Query: 255 GDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF------EESYI 308
D++ R +++ + +PD+ + LFSPYD+ + ++GK E Y
Sbjct: 275 ADEKIRIKSLSLGLVIPDITFQLAKNNEMMALFSPYDI---YQEYGKALSDISVTEMYYE 331
Query: 309 LYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSN 368
L ENQ +IK ISA ++ I + FE+G+P+I F D N R+ H I SN
Sbjct: 332 LLENQ----RIKK-TFISARKFFQTIAELHFESGYPYILFDDTVNRRNA--HKNRIVMSN 384
Query: 369 LCTEITLNTSKNE---------IG---VCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
LC+EI + +E +G CNLGS+N+ M++G +L + I++A+
Sbjct: 385 LCSEIVQPSLPSEFYSDLTFKKVGSDISCNLGSLNIARAMESGS----ELAELIQLAIES 440
Query: 417 LDNVIDINYYAVKKA-KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
LD V I+ + K N + +GLG M L I Y SKEA+ F + +
Sbjct: 441 LDLVSRISSLETAPSIKKGNSENHALGLGAMNLHGFLATNAIYYDSKEAVDFTNIFFYTV 500
Query: 476 CYYAYYASTELAEEKGRYSSY------DGSLWDQGILPQDSLKLLEKERGSKYL---KVN 526
Y+A+ AS +LA E G++ + DGS +D+ + E+ +V
Sbjct: 501 AYHAFSASNKLALELGKFKDFENTKFADGSYFDKYTKVASDFWTCKTEKVQALFDKYQVK 560
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
+ NWK+L I+K G+ NS+ +AIAPT +IS + + S++P + ++
Sbjct: 561 IPTQENWKQLVASIQKDGLANSHLMAIAPTGSISYLSSCTPSLQPVVSPVEVRKE----- 615
Query: 587 TEINRYLVKELKKKGLWDESMIANLKYF-DGNLSQISRIPDDLRKIYATAFEISPNWIIE 645
++ R V K N +YF DG A+E+ II
Sbjct: 616 GKLGRIYVPAYKLDN-------DNYQYFKDG------------------AYELGFEPIIN 650
Query: 646 AGSVRQKWIDQSQSLNIYISNK-SGKKLDETYKLAWLRGLKTTYYLR 691
+ Q+ +DQ+ SL +++++K + + L++ Y A+ +G + YY+R
Sbjct: 651 IVAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVR 697
>sp|P39452|RIR3_ECOLI Ribonucleoside-diphosphate reductase 2 subunit alpha OS=Escherichia
coli (strain K12) GN=nrdE PE=3 SV=3
Length = 714
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 178/677 (26%), Positives = 308/677 (45%), Gaps = 76/677 (11%)
Query: 44 FINKGI-DNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMP 102
+N+G D +LN +F ++L ++A Q +LG Y Y L + +
Sbjct: 66 LVNEGYYDESVLNRYSRDFVITLFTHAHTSGFRFQ-TFLGAWKFYTSYTLKTFDGKRYLE 124
Query: 103 QFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSG-TIRSQLSSCYLSTV 161
F + L+L + + E A++ + + S F +TPT N G R +L SC+L +
Sbjct: 125 DFADRVTMVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRI 183
Query: 162 PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAV 221
D++ I ++ LSK GG+ + +R G+PIK +S GVIP +K++ D
Sbjct: 184 EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFS 243
Query: 222 AVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK 281
NQ G R+GA YL H DI F++ ++ D++ R +++ + +PD+ +
Sbjct: 244 YANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKEN 303
Query: 282 STWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKK-ISALYLWRKILSMLFE 340
+ LFSPYDV + +GK F + I + ++ KK ++A ++++ + FE
Sbjct: 304 AQMALFSPYDVERV---YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFE 360
Query: 341 TGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIG------------VCNLG 388
+G+P+I ++D N +P G I+ SNLC+EI S +E CNLG
Sbjct: 361 SGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLG 418
Query: 389 SINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKYSNLRHRPVGLGIMG 447
S+N+ M D +T+ A+R L V D+++ +V + N +GLG M
Sbjct: 419 SLNIAHTM-----DSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 473
Query: 448 FQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG---------RYSSYDG 498
L I Y S EA+ F + I ++A S LA E+G RY+S G
Sbjct: 474 LHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYAS--G 531
Query: 499 SLWDQGILPQDSLKLLEKERGSKYLK--VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPT 556
+ Q + Q + + + G + + + + W +LR+ + ++G+ N N A+ PT
Sbjct: 532 EYFSQYL--QGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPT 589
Query: 557 ATISNIIGVSASIEPTYRNLHI-KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFD 615
+IS I ++SI P + I K +G ++ E
Sbjct: 590 GSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------- 630
Query: 616 GNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDE 674
NL+ +Y A+EI II+ + + +DQ SL ++ + + + +++
Sbjct: 631 -NLA-----------LYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINK 678
Query: 675 TYKLAWLRGLKTTYYLR 691
AW +G+KT YY+R
Sbjct: 679 AQIYAWRKGIKTLYYIR 695
>sp|Q08698|RIR3_SALTY Ribonucleoside-diphosphate reductase 2 subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdE PE=1 SV=2
Length = 714
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 166/626 (26%), Positives = 288/626 (46%), Gaps = 74/626 (11%)
Query: 89 RYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSG- 147
RY H E R+ M + L+L + + E A + + + S F +TPT N G
Sbjct: 121 RYLEHFED-RVTM---------VALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGK 169
Query: 148 TIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQ 207
R +L SC+L + D++ I ++ LSK GG+ + +R G+PIK +S
Sbjct: 170 QQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSS 229
Query: 208 GVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIA 267
GVIP +K++ D NQ G R+GA YL H DI F++ ++ D++ R +++
Sbjct: 230 GVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLG 289
Query: 268 IWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKK-IS 326
+ +PD+ + + + LFSPYD+ ++GK F + I + + K I+
Sbjct: 290 VVIPDITFRLAKENAQMALFSPYDI---QRRYGKPFGDIAISERYDELIADPHVRKTYIN 346
Query: 327 ALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL---------NT 377
A ++ + + FE+G+P+I F+D N +P G I+ SNLC+EI N
Sbjct: 347 ARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNL 404
Query: 378 SKNEIG---VCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKY 433
IG CNLGS+N+ H+ +D + +T+ A+R L V D+++ +V
Sbjct: 405 DYTHIGHDISCNLGSLNIA-HV----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAA 459
Query: 434 SNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR- 492
N +GLG M L I Y S EA+ F + I ++A + S LA E+G+
Sbjct: 460 GNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKT 519
Query: 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLN------WKKLRNRIKKFGMR 546
++ + S + G L+ + + +K + + W KLR+ + ++G+
Sbjct: 520 FAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIY 579
Query: 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606
N N A+ PT +IS I ++SI P + I+ KE K ++ +
Sbjct: 580 NQNLQAVPPTGSISYINHATSSIHPIVAKIEIR---------------KEGKTGRVYYPA 624
Query: 607 MIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN 666
+ D +Y A++I P II+ + + +DQ SL ++ +
Sbjct: 625 PFMTNENLD---------------MYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPD 669
Query: 667 -KSGKKLDETYKLAWLRGLKTTYYLR 691
+ + +++ AW +G+K+ YY+R
Sbjct: 670 TATTRDINKAQIYAWRKGIKSLYYIR 695
>sp|P0CH00|RIR1B_MYCS2 Ribonucleoside-diphosphate reductase subunit alpha 2
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=nrdE2 PE=1 SV=1
Length = 722
Score = 212 bits (540), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 175/670 (26%), Positives = 303/670 (45%), Gaps = 67/670 (10%)
Query: 46 NKGIDNKLLNPKLAEFNLSLLSNALLPERDLQF-NYLGLKILYDRYFLHIEGIRIEMPQF 104
N+ + ++L+ +F SLL A + +F +LG Y Y L + + +F
Sbjct: 77 NEYYEREVLDQYSRDFIKSLLDRAYA--KKFRFPTFLGAFKYYTSYTLKTFDGKRYLERF 134
Query: 105 FFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGT-IRSQLSSCYLSTVPD 163
+ + L+L + E A K + + F +TPT NSG R + SC+L + D
Sbjct: 135 EDRVVMVALTLAAGDTE-LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIED 193
Query: 164 DLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAV 223
++ I SI LSK GG+ + +R G+PIK +S GVIP +K++ D
Sbjct: 194 NMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYA 253
Query: 224 NQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKST 283
NQ G R+GA YL H DI F++ ++ D++ R +++ + +PD+ + K
Sbjct: 254 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNED 313
Query: 284 WTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFK-KISALYLWRKILSMLFETG 342
LFSPYDV + +G F + + + + ++ K KI+A ++ + + FE+G
Sbjct: 314 MYLFSPYDVERV---YGVPFADVSVTEKYYEMVDDARIRKTKINAREFFQTLAELQFESG 370
Query: 343 HPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIG------------VCNLGSI 390
+P+I F+D N +P G I SNLC+EI ++ +E CNLGS+
Sbjct: 371 YPYIMFEDTVNRSNPI--AGKITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSL 428
Query: 391 NLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINY-YAVKKAKYSNLRHRPVGLGIMGFQ 449
N+ M D +TI +A+R L V D + +V + N +GLG M
Sbjct: 429 NIAKAM-----DSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLH 483
Query: 450 DCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG-RYSSYDGSLWDQGILPQ 508
L +I Y S+E I F + + ++A AS ++A E+G + ++ S + G
Sbjct: 484 GYLARERIYYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGTHFKGFEKSKYASGEFFD 543
Query: 509 DSLKLLEKERGSKYLK------VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNI 562
+ + + K + +++ +WK+L+ ++K G+ N N A+ PT +IS I
Sbjct: 544 KYTDQVWEPKTDKVRRLFADADIHIPTQDDWKQLKESVQKHGIYNQNLQAVPPTGSISYI 603
Query: 563 IGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQIS 622
++SI P + I+ E I + Y
Sbjct: 604 NHSTSSIHPVASKIEIRK------------------------EGKIGRVYY------PAP 633
Query: 623 RIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWL 681
+ +D Y A+EI II+ + + +DQ SL ++ + + + +++ AW
Sbjct: 634 YMTNDNLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWR 693
Query: 682 RGLKTTYYLR 691
+G+KT YY+R
Sbjct: 694 KGIKTLYYIR 703
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,562,897
Number of Sequences: 539616
Number of extensions: 11864166
Number of successful extensions: 28848
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 28247
Number of HSP's gapped (non-prelim): 159
length of query: 749
length of database: 191,569,459
effective HSP length: 125
effective length of query: 624
effective length of database: 124,117,459
effective search space: 77449294416
effective search space used: 77449294416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)