Query psy8865
Match_columns 749
No_of_seqs 335 out of 1643
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:21:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07207 ribonucleotide-diphos 100.0 1E-205 3E-210 1819.7 64.1 739 1-749 214-965 (965)
2 KOG1112|consensus 100.0 1E-207 2E-212 1640.8 40.1 715 2-749 69-795 (796)
3 PRK12365 ribonucleotide-diphos 100.0 6E-202 1E-206 1805.1 66.7 740 1-749 302-1046(1046)
4 PRK06539 ribonucleotide-diphos 100.0 8E-198 2E-202 1727.6 66.8 704 1-707 70-775 (822)
5 PLN02437 ribonucleoside--dipho 100.0 7E-194 2E-198 1695.1 62.5 714 1-749 68-812 (813)
6 PRK08447 ribonucleotide-diphos 100.0 2E-181 4E-186 1578.8 58.7 643 2-698 69-774 (789)
7 PRK09209 ribonucleotide-diphos 100.0 2E-177 5E-182 1546.4 56.2 635 2-695 79-751 (761)
8 PRK07088 ribonucleotide-diphos 100.0 2E-176 4E-181 1536.7 57.5 633 2-695 82-754 (764)
9 PRK09103 ribonucleotide-diphos 100.0 6E-176 1E-180 1531.6 56.6 647 3-705 70-744 (758)
10 PHA02572 nrdA ribonucleoside-d 100.0 8E-176 2E-180 1531.6 57.2 643 2-704 70-741 (753)
11 PRK12364 ribonucleotide-diphos 100.0 1E-173 3E-178 1534.3 57.3 631 3-695 163-832 (842)
12 PRK07187 ribonucleotide-diphos 100.0 2E-165 3E-170 1437.3 55.7 633 5-696 26-698 (721)
13 PRK07632 ribonucleotide-diphos 100.0 6E-164 1E-168 1419.8 52.8 609 40-696 50-690 (699)
14 TIGR02506 NrdE_NrdA ribonucleo 100.0 3E-160 7E-165 1390.0 55.6 607 80-693 1-617 (617)
15 PRK08188 ribonucleotide-diphos 100.0 3E-158 8E-163 1372.3 54.9 606 40-696 58-700 (714)
16 PRK07306 ribonucleotide-diphos 100.0 1E-157 3E-162 1372.2 52.7 608 40-695 52-705 (720)
17 PRK09102 ribonucleotide-diphos 100.0 3E-152 7E-157 1308.3 52.4 553 67-704 10-578 (601)
18 PRK06406 ribonucleotide-diphos 100.0 8E-150 2E-154 1311.3 53.6 558 66-696 101-721 (771)
19 PRK08665 ribonucleotide-diphos 100.0 1E-147 3E-152 1298.4 54.2 556 71-698 5-569 (752)
20 PRK08115 ribonucleotide-diphos 100.0 1E-145 2E-150 1270.0 49.0 565 97-698 125-776 (858)
21 TIGR02504 NrdJ_Z ribonucleosid 100.0 3E-145 6E-150 1259.5 52.1 571 85-696 1-582 (586)
22 PRK06948 ribonucleotide reduct 100.0 9E-144 2E-148 1240.3 49.9 564 72-699 6-588 (595)
23 TIGR02510 NrdE-prime ribonucle 100.0 8E-143 2E-147 1224.5 46.9 527 72-698 12-557 (571)
24 PRK06556 vitamin B12-dependent 100.0 4E-139 8E-144 1234.1 53.5 595 68-695 48-694 (953)
25 PF02867 Ribonuc_red_lgC: Ribo 100.0 3E-139 6E-144 1201.0 39.6 533 153-690 1-538 (538)
26 cd01679 RNR_I Class I ribonucl 100.0 4E-132 1E-136 1115.1 40.9 454 102-692 1-460 (460)
27 cd02888 RNR_II_dimer Class II 100.0 1E-130 2E-135 1105.9 43.1 455 125-692 2-463 (464)
28 COG0209 NrdA Ribonucleotide re 100.0 9E-129 2E-133 1132.6 51.9 600 2-703 29-645 (651)
29 PRK07562 ribonucleotide-diphos 100.0 1E-125 2E-130 1121.0 51.2 582 78-691 47-914 (1220)
30 PRK08332 ribonucleotide-diphos 100.0 2E-125 5E-130 1154.8 53.8 465 187-696 758-1613(1740)
31 cd01676 RNR_II_monomer Class I 100.0 1.4E-84 3.1E-89 751.7 37.2 492 86-707 5-622 (658)
32 TIGR02505 RTPR ribonucleoside- 100.0 4.7E-71 1E-75 640.1 26.4 488 78-690 8-645 (713)
33 cd00576 RNR_PFL Ribonucleotide 100.0 1.6E-49 3.4E-54 442.0 23.6 364 124-687 1-397 (401)
34 PF00317 Ribonuc_red_lgN: Ribo 99.8 5.4E-20 1.2E-24 161.2 5.3 75 77-151 2-83 (83)
35 cd01675 RNR_III Class III ribo 97.6 0.0036 7.7E-08 73.6 19.5 250 327-685 228-510 (555)
36 PRK10977 hypothetical protein; 97.5 0.0051 1.1E-07 71.1 19.2 145 323-478 187-353 (509)
37 TIGR02487 NrdD anaerobic ribon 97.5 0.0071 1.5E-07 71.4 20.3 248 329-684 233-515 (579)
38 PF13597 NRDD: Anaerobic ribon 97.3 0.0034 7.4E-08 73.6 15.1 146 326-483 224-385 (546)
39 PRK08270 anaerobic ribonucleos 97.2 0.023 5E-07 67.9 20.9 243 331-681 345-613 (656)
40 PRK14704 anaerobic ribonucleos 97.1 0.028 6E-07 66.7 19.7 252 326-685 259-551 (618)
41 PRK09263 anaerobic ribonucleos 97.0 0.053 1.1E-06 65.5 21.3 156 327-492 347-537 (711)
42 PRK07111 anaerobic ribonucleos 96.8 0.055 1.2E-06 65.6 18.5 255 326-685 378-672 (735)
43 PRK08579 anaerobic ribonucleos 96.3 0.18 3.9E-06 60.1 18.6 150 329-491 251-461 (625)
44 TIGR02827 RNR_anaer_Bdell anae 95.5 0.13 2.8E-06 60.7 12.6 104 381-492 320-431 (586)
45 PRK08271 anaerobic ribonucleos 95.2 0.085 1.8E-06 62.7 10.1 106 381-491 347-464 (623)
46 PF11230 DUF3029: Protein of u 87.5 43 0.00093 38.4 18.5 252 320-698 170-445 (487)
47 COG1328 NrdD Oxygen-sensitive 58.4 35 0.00076 41.5 8.5 121 367-491 385-532 (700)
48 PF08471 Ribonuc_red_2_N: Clas 36.0 67 0.0015 29.0 4.6 55 78-132 17-87 (93)
49 PRK15329 chaperone protein Sic 34.6 48 0.001 32.1 3.8 29 324-352 57-88 (138)
50 PF03847 TFIID_20kDa: Transcri 33.6 93 0.002 26.5 5.0 32 461-492 19-50 (68)
51 cd07981 TAF12 TATA Binding Pro 29.0 1.2E+02 0.0026 25.9 5.0 33 460-492 20-52 (72)
52 TIGR01255 pyr_form_ly_1 format 23.6 4.5E+02 0.0098 32.6 10.2 164 327-509 365-592 (744)
53 COG1794 RacX Aspartate racemas 21.3 3E+02 0.0064 29.1 7.0 106 210-380 99-206 (230)
No 1
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.4e-205 Score=1819.68 Aligned_cols=739 Identities=70% Similarity=1.169 Sum_probs=701.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCC-----cccchhhhhHHHhHHHHHHhhccccccchHHHHhcHHHHHhhcccccc
Q psy8865 1 MEKDPVYSQVTARLLMYCIQKEVFGKE-----IKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERD 75 (749)
Q Consensus 1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~-----~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD 75 (749)
+++||||++|||||++.+|||++.+.. ..+.++...|.+.|..++++|++.++|++++.++++++|+++|+|+||
T Consensus 214 ~~~~p~y~~~Aarl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd 293 (965)
T PRK07207 214 IEKEPNYSYVTARLLLDTLRREALGFLGVPEEVTQAEMATRYAEYFPAFIKKGIEAELLDPKLAQFDLERLGAALDPERD 293 (965)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHhccchhhhhHHHHHhhHHHHHHHhhHHHh
Confidence 468999999999999999999997631 123445667888899999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccc
Q psy8865 76 LQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSS 155 (749)
Q Consensus 76 ~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsS 155 (749)
+.|+|+|+++|++|||+|.+|.++|+||+|||||||+||..|.++.+++++||++||+++|+||||||+||||+++||||
T Consensus 294 ~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtl~NaGt~~~qlsS 373 (965)
T PRK07207 294 LQFTYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLALNEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSS 373 (965)
T ss_pred CCCCHHHHHHHHHhhcccCCCCeeecHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCeecCCHHHhcCCCCCCCeee
Confidence 99999999999999999988899999999999999999999877889999999999999999999999999999999999
Q ss_pred eeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEE
Q psy8865 156 CYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235 (749)
Q Consensus 156 Cfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~ 235 (749)
|||++|+|||+|||++++++|+++|+|||||+|||+|||+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|+
T Consensus 374 Cfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~lR~~Gs~I~g~~g~ssGvvpflk~~n~~~~~v~QgG~R~GA~~v 453 (965)
T PRK07207 374 CYLTTVPDDLDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453 (965)
T ss_pred eEeCCCcccHHHHHHHHHHHHHHHhcCCeeeecccccCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHcCCcCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhh
Q psy8865 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTK 315 (749)
Q Consensus 236 yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~ 315 (749)
||++|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|+++||++|+++|++||+...
T Consensus 454 yL~~wH~DI~eFL~lk~~~gde~~r~~~l~~av~ipD~FM~rv~~d~~w~Lf~P~~~~~L~~~yG~~f~~~Y~~~e~~~~ 533 (965)
T PRK07207 454 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFSPSEVPDLHDLFGKAFEEAYTAYEAKAA 533 (965)
T ss_pred EecCCCccHHHHHHHhhccCchhhHhhcCchhhccCHHHHHHHHcCCCEEEecCcccccHHhhhhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhh
Q psy8865 316 LGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH 395 (749)
Q Consensus 316 ~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~ 395 (749)
+|+++.+++|+||+||++|++++||||+|||+|+|+||+++|++|.|+|++||||+||+|+++++|++|||||||||++|
T Consensus 534 ~g~~~~~~~v~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlCtEI~l~~~~~e~avCNLgSINL~~~ 613 (965)
T PRK07207 534 RGEIKLFKKIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAH 613 (965)
T ss_pred cCCcceeeEeeHHHHHHHHHHHHHHhCCCeeehhHHHHhcCCcccCCeEeecCCCcceeecCCCcceeeeeccceeHHHH
Confidence 88877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC-CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy8865 396 MKNG-KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474 (749)
Q Consensus 396 v~~g-~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~ 474 (749)
|+++ .||+++|+++|++||||||||||+|+||+|+++++|+++|+||||+|||||+|+++||||+|+||++|+++|||.
T Consensus 614 v~~~~~~D~~~l~~~v~~avr~LDnVID~n~yp~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~ 693 (965)
T PRK07207 614 IKDGAKLDHEKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDEAVEFADRSMEA 693 (965)
T ss_pred hhCCCcCCHHHHHHHHHHHHHhccceeeCCCCcHHHHHHHhhccCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence 9876 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeecc
Q psy8865 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIA 554 (749)
Q Consensus 475 i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~Aia 554 (749)
|+|+|++||++||+|+|+||.|++|+|++|++|+|+|..+.+.|+ .|..++.+..+||++||++|++||||||+++|||
T Consensus 694 i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~~~r~-~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiA 772 (965)
T PRK07207 694 VSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARG-GYLEVDRSSTLDWDALRARIKKHGMRNSNCMAIA 772 (965)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhhhhhc-ccccccccchhhHHHHHHHHHHhCccccceeccC
Confidence 999999999999999999999999999999999999998776665 4555555678899999999999999999999999
Q ss_pred CCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhccc
Q psy8865 555 PTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYAT 634 (749)
Q Consensus 555 PT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~t 634 (749)
||+|||+|+|+|+||||+|+|+|+|++.+|+|+++||+|+++|+++|+|+++|++++++++||||+|+.||+++|.+|+|
T Consensus 773 PT~S~S~i~g~s~giEP~~s~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~f~t 852 (965)
T PRK07207 773 PTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYAT 852 (965)
T ss_pred ChHHHHHHhCCCCccCcCchhhheeeccCCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCCccCCCCCChhHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccccccccch
Q psy8865 635 AFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE 714 (749)
Q Consensus 635 A~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~~~~~~t~~~~~~~~~~~~ 714 (749)
||||+|+|+|+|+|+||||||||||+|||+++++.++|.++|++||++||||+|||||+++++++|+||+.+. +++
T Consensus 853 A~ei~~~~~I~~~A~rQ~~IDqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlKt~YY~Rs~~~~~~~~~t~~~~~----~~~ 928 (965)
T PRK07207 853 AFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKTTYYLRTLGATHVEKSTVNTGA----LNA 928 (965)
T ss_pred CccCCHHHHHHHHHHHcCcchhhhcCCcCCCCCCHHHHHHHHHHHHHcCCCeEEEEecccccchhhhcccccc----ccc
Confidence 9999999999999999999999999999999899999999999999999999999999999999999998654 455
Q ss_pred hcccc--c-----CchhhhhccccccccccccCCCCccccCC
Q psy8865 715 ISIKG--Y-----NKNLQEIKNNKKCLINSEINDVNECESCQ 749 (749)
Q Consensus 715 ~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~c~~c~ 749 (749)
++... + ++...+.+.|.+|++ ++|+||+||
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 965 (965)
T PRK07207 929 VSSGGGGAGGAAAAAAAPPAADPKACSI-----DDPDCEACQ 965 (965)
T ss_pred cCCCccccccccccccCCCCCCCCcccC-----CCCCCcccC
Confidence 54310 0 001112345789999 899999999
No 2
>KOG1112|consensus
Probab=100.00 E-value=1.2e-207 Score=1640.78 Aligned_cols=715 Identities=40% Similarity=0.670 Sum_probs=666.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH---hcHHHHHhhccccccCCC
Q psy8865 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE---FNLSLLSNALLPERDLQF 78 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~---~~~~~l~~~i~~~rD~~f 78 (749)
..||||+.+|||+.+++|||++...+ ...++++|...- -.+|...+++++++.+ .+.++|+++|.|+||+.|
T Consensus 69 t~HPdYa~laaRIavSnlHk~T~k~F--s~vi~~l~~~vn---~~tgk~apmisd~~y~Iv~~n~d~lnsaIiYdrDf~y 143 (796)
T KOG1112|consen 69 TKHPDYAILAARIAVSNLHKQTKKVF--SEVIEDLHNHVN---PHTGKHAPMISDEVYNIVMENKDRLNSAIIYDRDFSY 143 (796)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcC---cccCCcCCcccHHHHHHHHhhhhhhccceeeccccce
Confidence 57999999999999999999988642 244544443211 1567778899998766 488999999999999999
Q ss_pred ChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccceee
Q psy8865 79 NYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL 158 (749)
Q Consensus 79 ~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl 158 (749)
+|||++||+++||+|.+|++.|+||||+||||.+++..+ .+.+++.|++||.++|+|||||||||||++||||||||
T Consensus 144 ~yFGfkTLerSYLlking~v~ERPQhm~MRVa~gIH~~D---ie~aietYnLmS~ryfTHAsPTLfnagt~rPQlsSCFL 220 (796)
T KOG1112|consen 144 NYFGFKTLERSYLLKINGEVAERPQHMLMRVALGIHGED---IEAAIETYNLMSERYFTHASPTLFNAGTPRPQLSSCFL 220 (796)
T ss_pred eecchhHHHHHHHHHhCCchhcChHhHhHHhhhccchhh---HHHHHHHHHHhhhhhhccCCchhhhcCCCCccccceEE
Confidence 999999999999999999999999999999999999865 47899999999999999999999999999999999999
Q ss_pred ccC-CCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCC-CcccceEEe
Q psy8865 159 STV-PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236 (749)
Q Consensus 159 ~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~~~y 236 (749)
+++ +||++|||++++++|+|||.+||||+++++||++||.|+||||+|+|+||++++||+++++|+||| ||+||.++|
T Consensus 221 ~tmk~DSIeGiydtlkqcA~IsKsaGGIGl~vh~IRatGs~i~gTnGtSNGliPmirV~NntaRYvdQGg~kRpGafAiy 300 (796)
T KOG1112|consen 221 LTMKDDSIEGIYDTLKQCAMISKSAGGIGLNVHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFAIY 300 (796)
T ss_pred EEecccchHHHHHHHHHhhhhhhccCcceEEEeeeeccCcEEecCCCCCCCccchhhhhcchhhHhhcCCCCCCceeEEE
Confidence 998 577999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred eeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhc
Q psy8865 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKL 316 (749)
Q Consensus 237 l~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~ 316 (749)
||+||.||+|||++|+|+|.|+.|++|+|+++||||+||+||++|++|+||||+++|+|.|+||+||+++|.+||+..
T Consensus 301 LEPWHadifdFlelrKn~G~Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~LY~kYEkeg-- 378 (796)
T KOG1112|consen 301 LEPWHADIFDFLELRKNTGKEEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEALYTKYEKEG-- 378 (796)
T ss_pred echhHHHHHHHHHHHhccChHHHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhh
Q psy8865 317 GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM 396 (749)
Q Consensus 317 g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v 396 (749)
+.+|+|+|++||..|+++|.|||.|||+|||+|||+|+|+|+|+|+|||||+||+.+++++|++||||+||.|++||
T Consensus 379 ---r~~k~vkAqklW~aIleaQ~ETGtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASiaLp~fv 455 (796)
T KOG1112|consen 379 ---RGKKTVKAQKLWYAILEAQVETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIALPMFV 455 (796)
T ss_pred ---cccceeeHHHHHHHHHHHhhccCCceEEehhhhcccccccccceeeecchhHHHhhccCCcceeeeehHhhhhhhhc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy8865 397 KN-GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475 (749)
Q Consensus 397 ~~-g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i 475 (749)
++ ..|||++|++++++.+|.|+.|||+|+||+|+|+++|+|||||||||+||||+|+.|++||+|+||+.|+.+|||+|
T Consensus 456 ~~~~~ydF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEti 535 (796)
T KOG1112|consen 456 TPEKTYDFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETI 535 (796)
T ss_pred cccccccHHHHHHHHHHHHhhhhheeccCcccchHhhhcccccCCccccchhHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 85 46999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccC
Q psy8865 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAP 555 (749)
Q Consensus 476 ~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaP 555 (749)
||+|++||+|||++.|||+.|+||+.|+|+|++|+|+ +.+...|||+.||++|++||+|||.++|.||
T Consensus 536 Yy~aleAScelA~~eGpyetyeGSPvSkGilq~dmw~------------~~pt~~wDW~~Lre~I~khGvRNSLl~ApMP 603 (796)
T KOG1112|consen 536 YYAALEASCELAQKEGPYETYEGSPVSKGILQFDMWN------------VKPTDLWDWATLREKIAKHGVRNSLLVAPMP 603 (796)
T ss_pred HHHHHHHhHHHHHhcCCCcccCCCcccccccchhhcC------------CCCCcccCHHHHHHHHHHhccccceeeccCC
Confidence 9999999999999999999999999999999999985 4566789999999999999999999999999
Q ss_pred CccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccc
Q psy8865 556 TATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATA 635 (749)
Q Consensus 556 T~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA 635 (749)
|+|+|||+|..++|||+.+|+|.|++++|+|++|||+|++||-++|+|+++|.+.++..+||+|+|+.||+++|++|+|+
T Consensus 604 TAsTsQIlGnNE~fEP~tsNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTv 683 (796)
T KOG1112|consen 604 TASTSQILGNNECFEPYTSNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTV 683 (796)
T ss_pred CcchhhhhcCccccCcccccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcE-EEEeCCCcccccccccccccccccccch
Q psy8865 636 FEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDE 714 (749)
Q Consensus 636 ~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt-~YY~rs~~~~~~~~~t~~~~~~~~~~~~ 714 (749)
|||+|+.+|+|||+|+.|||||||+|+++..|+..+|.+||+|.||+|||| +|||||++++.++|||||+.... ....
T Consensus 684 WEIsqktvi~mAAdRg~~iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~-~~~~ 762 (796)
T KOG1112|consen 684 WEISQKTVIDMAADRGAFIDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLN-EKAE 762 (796)
T ss_pred HHHHHHHHHHHHhhcccccccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhc-cccc
Confidence 999999999999999999999999999999999999999999999999999 89999999999999999975421 0111
Q ss_pred hcccccCchhhhh----ccccccccccccCCCCc-cccCC
Q psy8865 715 ISIKGYNKNLQEI----KNNKKCLINSEINDVNE-CESCQ 749 (749)
Q Consensus 715 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-c~~c~ 749 (749)
+.. + ++..... ....+|++ ++|+ |++|.
T Consensus 763 ~~~-~-~~~~~e~~~~~~~~~~c~~-----~n~e~C~mCs 795 (796)
T KOG1112|consen 763 VAE-G-DSKEEEEDEYNTAVMVCSL-----DNPEACLMCS 795 (796)
T ss_pred ccc-c-chhhhHHhhhhhhhhhhcc-----CCchHhhhcC
Confidence 111 0 0100010 12468999 5655 99994
No 3
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=6.2e-202 Score=1805.10 Aligned_cols=740 Identities=57% Similarity=0.974 Sum_probs=691.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHHhcHHHHHhhccccccCCCCh
Q psy8865 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNY 80 (749)
Q Consensus 1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~f~y 80 (749)
+++||||++|||||++.+|||++++....+..+...|...|+.++..| ..+.+++++.++|+++|+++|+++||+.|+|
T Consensus 302 ~~~~p~y~~~Aarl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y 380 (1046)
T PRK12365 302 IEKEPDYAFVAAELLLDVVYKEALGKSKYDEDLEEAHKDHFKRYILEG-DTYRLNPELKHYDLDALAEALDLSRDLQFSY 380 (1046)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHhcC-chhhhHHHhhhhhHHHHHHHHhHHhhCCCCH
Confidence 467999999999999999999998754445556667777777777776 3366777788899999999999999999999
Q ss_pred hhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhcccc-CcHHHHHHHHHHHhcCCccccCccccccCcccccccceeec
Q psy8865 81 LGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES-NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLS 159 (749)
Q Consensus 81 ~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~-~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl~ 159 (749)
+|+++|++|||+|.+|+++|+||+|||||||+||..|. ++.+++++||++||+++|+||||||+||||+++|||||||+
T Consensus 381 ~g~~~l~~~Yl~~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~~a~~fy~~ls~~~f~~atPtl~NaGt~~~qlsSCfl~ 460 (1046)
T PRK12365 381 MGVQNLYDRYFNHHEGRRLETPQIFWMRVSMGLALNEGQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLS 460 (1046)
T ss_pred HHHHHHHHhhCcCCCCCcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCceeeEeC
Confidence 99999999999998889999999999999999999873 67889999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeC
Q psy8865 160 TVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239 (749)
Q Consensus 160 ~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~ 239 (749)
+|+|||+|||++++++|++||+|||||+|||+|||+|++|+|++|+|+|+|||||+||+++.+|+|||+||||+|+||++
T Consensus 461 ~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgG~R~GA~~~yL~~ 540 (1046)
T PRK12365 461 TVQDDLVHIYKVISDNAMLSKWAGGIGNDWTAVRATGALIKGTNGKSQGVIPFIKVANDTAVAVNQGGKRKGAVCVYLEV 540 (1046)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCChHhHHHHHHHHHHHHHhCCcccCceeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCc
Q psy8865 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKI 319 (749)
Q Consensus 240 wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~ 319 (749)
|||||++||++|+|+|++++|++|+|+||||||+||+||++|++|+||+|+++|+|+++||++|+++|++||+.+.+|++
T Consensus 541 wH~DI~eFL~lk~~~g~e~~r~~~l~~~v~ipD~FM~~v~~~~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~ye~~~~~g~~ 620 (1046)
T PRK12365 541 WHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFSPDDVPGLHEAYGEEFEKLYEEYERKVDTGEI 620 (1046)
T ss_pred CCccHHHHHHHhhhcccHHHHhhccchhhccCHHHHHHHHcCCCeEEECccccccHHHHhchHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred eeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhccC
Q psy8865 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG 399 (749)
Q Consensus 320 ~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~g 399 (749)
+.+++|+|++||++|++++|+||+|||+|+|+||++||++|.|+|+|||||+||+|+++++|++|||||||||++||++|
T Consensus 621 ~~~~~v~Ar~Lw~~I~~~~~eTG~P~i~f~D~~N~~~~~~~~G~I~~SNlC~Ei~l~~~~~e~~vCNL~SiNL~~~v~~~ 700 (1046)
T PRK12365 621 RLYKKVEAEDLWRKMLSMLYETGHPWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVEHIVND 700 (1046)
T ss_pred ceeeEEeHHHHHHHHHHHHHHhCCCeEEehhhhhhcCCCCcCCeeEecCCCcceeecccCCcCceeecchhhHHHhcccc
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8865 400 KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479 (749)
Q Consensus 400 ~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A 479 (749)
.||+++|+++|+++|||||||||+|.||+|+++++|+++|+||||+|||||+|+++||||+|+||++|+++|||+|+|+|
T Consensus 701 ~~D~~~l~~~v~~avr~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A 780 (1046)
T PRK12365 701 GLDEEKLSETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLGVMGFQDALYKLNISYASQEAVEFADYSSELIAYYA 780 (1046)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhcCCcccchhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccc
Q psy8865 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATI 559 (749)
Q Consensus 480 ~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~ 559 (749)
++||++||+|+|+||.|++|+|++|+||+|+|..+.+.++.....++.+..++|+.||++|++||||||+++||||||||
T Consensus 781 ~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~~~~~~~~~~~~~~~~~~~~W~~Lr~~i~~~GlRNs~l~AiaPT~S~ 860 (1046)
T PRK12365 781 ILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLLMDTSSRKDWEPVRSLIKEYGMRNSQLMAIAPTATI 860 (1046)
T ss_pred HHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhhhhhhhccccccccccchhhHHHHHHHHHHhCcchhcceeeCCCchH
Confidence 99999999999999999999999999999999876555541111223445789999999999999999999999999999
Q ss_pred cccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCC
Q psy8865 560 SNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEIS 639 (749)
Q Consensus 560 S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~ 639 (749)
|+|+|+|+||||+|+|+|+|++.+|+|.++|++|+++|+++|+|+++|++.+++++||||+++.+|+++|.+|+|||||+
T Consensus 861 S~i~g~s~giEP~~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~ 940 (1046)
T PRK12365 861 SNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIE 940 (1046)
T ss_pred HHHhCCCCCcccchhhhheeeccCCeEEEecHHHHHHHHHcCCChHHHHHHHHHhcCCcccccCCchHHHhhcCcHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccccccccch--hcc
Q psy8865 640 PNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE--ISI 717 (749)
Q Consensus 640 ~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~~~~~~t~~~~~~~~~~~~--~~~ 717 (749)
|+|+|+|+|+||||||||||+|||+++++.++|.++|++||++||||+|||||+++++++|+||+.++.+ +.+ +..
T Consensus 941 ~~~~I~~~A~rQk~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~GlKt~YY~Rt~~a~~~~~~t~~~~~~~--~~~~~~~~ 1018 (1046)
T PRK12365 941 PEWIIECASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSSAATSVEKSFVDINKRG--IQPRWMKN 1018 (1046)
T ss_pred HHHHHHHHHHHcCccchhhcCCcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccchhhhhcccCCccc--CCCCcccc
Confidence 9999999999999999999999999988999999999999999999999999999999999999987644 222 111
Q ss_pred cccCch--hhhhccccccccccccCCCCccccCC
Q psy8865 718 KGYNKN--LQEIKNNKKCLINSEINDVNECESCQ 749 (749)
Q Consensus 718 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~c~~c~ 749 (749)
++++++ .....++.+|++ ||+||+||
T Consensus 1019 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 1046 (1046)
T PRK12365 1019 KSASTSIVVERAKKTPVCSL------EEGCESCQ 1046 (1046)
T ss_pred cccccccCCCcccCCCcccC------CCCCcccC
Confidence 111111 111234689999 48899999
No 4
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.9e-198 Score=1727.64 Aligned_cols=704 Identities=40% Similarity=0.743 Sum_probs=674.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH-hcHHHHHhhccccccCCCC
Q psy8865 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNLSLLSNALLPERDLQFN 79 (749)
Q Consensus 1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~-~~~~~l~~~i~~~rD~~f~ 79 (749)
|.+||||++|||||++.+|||++++++..+..+...|...|+.+++++++.|+|++++.+ +|+++|+++|+|+||+.|+
T Consensus 70 ~~~~pdy~~~Aarl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~~~ 149 (822)
T PRK06539 70 VKDDPAFDTVAARLLLKKIYKRVLGDYDSPEELQDLHANHFRRTIEKGVAEGLLDSRLGGLFDLERLAAALDPTRDELLK 149 (822)
T ss_pred hhhCccHHHHHHHHHHHHHHHHHhccccchhHHHHHhHHHHHHHHHhhccccccCHHHhCHhHHHHHHhhhChhhhcCCC
Confidence 468999999999999999999999876544456677888899999999999999999987 8999999999999999999
Q ss_pred hhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccceee
Q psy8865 80 YLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL 158 (749)
Q Consensus 80 y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl 158 (749)
|+|+++|++|||+|. +|+++|+||+||||||++||..|.++.+++++||++||+++|+||||||+||||+++|||||||
T Consensus 150 y~g~~~l~~rYllk~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~f~~atPtL~NaGt~~~qlsSCFl 229 (822)
T PRK06539 150 YIGVVTLNNRYGIRARNGDALEVPQYFWMRIAMGLSLNEDDPTSSALAFYEKMSKLEYLAAGSTLVNAGTPYPQLSNCFV 229 (822)
T ss_pred HHHHHHHHhhccccCCCCCEeecHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCceeee
Confidence 999999999999997 7889999999999999999998866789999999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeee
Q psy8865 159 STVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLE 238 (749)
Q Consensus 159 ~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~ 238 (749)
++|+|||+|||++++++|+|+|.|||||+|||+|||+||+|+|++|+|+|+|||||+||+++++|+|||+||||+|+||+
T Consensus 230 ~~v~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~d~~~~~v~QgG~RrGA~~~yL~ 309 (822)
T PRK06539 230 MEMQDDIEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALCFYME 309 (822)
T ss_pred ccCCCcHHHHHHHHHHHHHHHhhCCceeecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCCCCcCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCC
Q psy8865 239 TWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGK 318 (749)
Q Consensus 239 ~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~ 318 (749)
+|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|.++||++|+++|.+||+....|+
T Consensus 310 ~wH~DI~eFL~lk~n~g~e~~r~~~~n~sv~i~D~FM~~V~~d~~w~L~~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~g~ 389 (822)
T PRK06539 310 NWHMDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPLETPDLNELYGKAFSKRYAQYVEQAEAGR 389 (822)
T ss_pred CCCcCHHHHHHHhhcCCchhhhhccCceeeeeCHHHHHHHHcCCCeEEECCcccccHHHHhCcHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877787
Q ss_pred ceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhcc
Q psy8865 319 IKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN 398 (749)
Q Consensus 319 ~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~ 398 (749)
++++++|+||+||++|++++|+||+|||+|+|+||+++|++|.|+|++||||+||+|+++++|++||||+||||++||++
T Consensus 390 ~~~~~~V~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlC~EI~l~~~~~e~~vCNL~SINL~~fv~~ 469 (822)
T PRK06539 390 IRMFKRITAREQFRAILMSLQTTSHPWLTWKDTINNRALNNNTGTIHLSNLCTEICLPQDRDNVSVCNLASINLSRHLAD 469 (822)
T ss_pred cceeeEEeHHHHHHHHHHHHHHhCCCceEehhhHhhcCCCccCCcEeecCCcceeeccCCccccceeeeheeEHHHHhcc
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy8865 399 GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478 (749)
Q Consensus 399 g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~ 478 (749)
|.|||++|+++|+++|||||||||+|.||+|+++++|+++|+||||+|||||+|+++||||+|+||++++++|||.|+|+
T Consensus 470 ~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~e~i~~~ 549 (822)
T PRK06539 470 GELDWAQLEESTRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGVMGFTDMVERLGYSYESEEAYDLIDRIMEHISYA 549 (822)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHhcccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCcc
Q psy8865 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTAT 558 (749)
Q Consensus 479 A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t 558 (749)
|++||++||+|+|+||.|++|+|++|++|+|.|....+.|+ ....+.....+||+.||++|+ +|+|||+++|||||||
T Consensus 550 A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~~~~~-~~~~~~~~~~~dW~~L~~~i~-~GlRNs~l~AiAPTgS 627 (822)
T PRK06539 550 AIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRG-VPVDVNRTTRLDWDALRAKVR-GGMRNATLMAIAPTAS 627 (822)
T ss_pred HHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhhhhcc-ccccccccchhcHHHHHHHHH-hCeeccceeecCCchh
Confidence 99999999999999999999999999999999886655443 111233445789999999985 6999999999999999
Q ss_pred ccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCC
Q psy8865 559 ISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI 638 (749)
Q Consensus 559 ~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei 638 (749)
||+|+|+|+||||+|+++|+|++.+|+|.++|++|+++|+++|+| ++++++|...+||+|+++.||++++++|+|||||
T Consensus 628 ~S~i~g~S~gIEP~~s~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~~~~~i~~~~Gsvq~i~~iP~~~~~~f~tA~eI 706 (822)
T PRK06539 628 IGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPDEIKALYRTSFQL 706 (822)
T ss_pred HHHhcCCCCCcCcchhhhheeecccceEEEeCHHHHHHHHHcCCC-HHHHHHHHHhCCCccCcccCChHHHhhcCcHhhC
Confidence 999999999999999999999999999999999999999999999 5788888888999999999999999999999999
Q ss_pred CHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccc
Q psy8865 639 SPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGI 707 (749)
Q Consensus 639 ~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~~~~~~t~~~~~ 707 (749)
+|+|||+|||+||||||||||+|||+++++.++|.++|++||++||||+||+||+++++++|+||+.++
T Consensus 707 ~~~~~I~maA~rQ~~IDqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT~YYlrt~~~~~~~~~t~~~~~ 775 (822)
T PRK06539 707 SPYAFLEVAARAQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKTTYYLHMKPRHTAEQSTVKVNK 775 (822)
T ss_pred CHHHHHHHHHHHCccchhhcCCeeecCCCCHHHHHHHHHHHHHcCCCeEEeeccchhhhhhhhccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999865
No 5
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=100.00 E-value=7e-194 Score=1695.11 Aligned_cols=714 Identities=39% Similarity=0.673 Sum_probs=661.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHHh---cHHHHHhhccccccCC
Q psy8865 1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF---NLSLLSNALLPERDLQ 77 (749)
Q Consensus 1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rD~~ 77 (749)
+.+||||++|||||++.+|||++.+.+. ..+...|...+ ...++..++|++++.+| |+++|+++|+++||+.
T Consensus 68 ~~~~p~y~~~Aarl~~~~l~k~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~ 142 (813)
T PLN02437 68 TTNHPDYAILAARIAVSNLHKNTKKSFS--ETVKDMYNHVN---ERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFD 142 (813)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHH---HhcccchhhcCHHHHHHHHHHHHHHHHHhCcccccC
Confidence 3679999999999999999999987532 22333343222 13366688999988765 9999999999999999
Q ss_pred CChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCccccccccee
Q psy8865 78 FNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCY 157 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCf 157 (749)
|+|+|+++|++|||+|.+|.++|+||+||||||++|+..+ .+++++||++||+++|+||||||+||||+++||||||
T Consensus 143 ~~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~l~~~~---~~~a~~~Y~~ls~~~f~~aTPtL~naGt~~~qlsSCF 219 (813)
T PLN02437 143 YDYFGFKTLERSYLLKVNGKVVERPQHMLMRVSVGIHKDD---IESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCF 219 (813)
T ss_pred CCHHHHHHHHHhheecCCCCcccCHHHHHHHHHHHHcccC---HHHHHHHHHHHHcCCcccCCchhhcCCCCCCCcceee
Confidence 9999999999999999878889999999999999999754 4689999999999999999999999999999999999
Q ss_pred eccC-CCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCC-CcccceEE
Q psy8865 158 LSTV-PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235 (749)
Q Consensus 158 l~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~~~ 235 (749)
|+++ +||++|||++++++|+|+|+|||||+|||+|||+|++|+|++|+|+|+|||||+||+++.+|+||| +||||+|+
T Consensus 220 l~~~~~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgGg~RrGA~~v 299 (813)
T PLN02437 220 LICMKDDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAI 299 (813)
T ss_pred ecCCCcchHHHHHHHHHHHHHHHhcCCeEeecccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHHHcCCCccccceeE
Confidence 9998 789999999999999999999999999999999999999999999999999999999999999995 99999999
Q ss_pred eeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhh
Q psy8865 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTK 315 (749)
Q Consensus 236 yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~ 315 (749)
||++|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|.++||++|+++|++||+.
T Consensus 300 yL~~wH~DI~eFL~lK~~~g~e~~r~~~l~~sv~ipDlFM~rv~~d~~W~Lf~P~e~~~L~~~yG~eF~~~Y~~~e~~-- 377 (813)
T PLN02437 300 YLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWSLFCPNEAPGLADCWGEEFERLYTKYERE-- 377 (813)
T ss_pred EEeCCCccHHHHHHHhcccCcHhHHHHhcceeEEECHHHHHHHHcCCCEEEECCcccchHHHhhchHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhh
Q psy8865 316 LGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH 395 (749)
Q Consensus 316 ~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~ 395 (749)
|+ .+++|+||+||++|++++|+||+|||+|+|+||+++|++|.|+|++||||+||+|+++++|++||||+||||++|
T Consensus 378 -g~--~~~~V~AreLw~~I~~s~~eTG~P~i~fkD~~N~~~~~~~~G~I~~SNlCtEI~~~~~~~e~avCNL~SINL~~~ 454 (813)
T PLN02437 378 -GK--AKKVVQAQQLWFAILESQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRF 454 (813)
T ss_pred -Cc--eeEEEEHHHHHHHHHHHHHHhCCCeEEEhHHHhhcCCCccCCceEeecccccccccCCccceeeeecchhhHHHH
Confidence 54 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc--------------------CCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHc
Q psy8865 396 MKN--------------------GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIM 455 (749)
Q Consensus 396 v~~--------------------g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~l 455 (749)
|++ +.||++.|+++|+++||+||||||+|.||+|+++++|+++|+||||||||||+|+++
T Consensus 455 v~~~~~~~~~~~~~~~~~~~~~~~~fD~~~L~~~v~~avr~LDnvID~n~yP~~~a~~~n~~~R~IGLGv~Glad~L~~l 534 (813)
T PLN02437 455 VREKGVPLESHPSKLVGSLGSKNRYFDFEKLAEVTAVVTRNLNKIIDVNYYPVETARRSNMRHRPIGIGVQGLADAFILL 534 (813)
T ss_pred HhcccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHhhcCCCccccHHHHHHHHHHC
Confidence 952 259999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHH
Q psy8865 456 KIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535 (749)
Q Consensus 456 gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~ 535 (749)
|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|+||+|.|+. .+...+||++
T Consensus 535 gi~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~fp~f~~S~~~~G~~~~~~~~~------------~~~~~~dW~~ 602 (813)
T PLN02437 535 GMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDMWGV------------TPSGRWDWAA 602 (813)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcchhhhccchhccC------------CCchhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999998752 2234679999
Q ss_pred HHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcC
Q psy8865 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFD 615 (749)
Q Consensus 536 Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~ 615 (749)
||++|++||||||+++|||||+|||+|+|+|+||||+|+|+|.|++.+|+|++||++|+++|+++|+|+++++++|...+
T Consensus 603 Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~sn~y~R~~~~Ge~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~ 682 (813)
T PLN02437 603 LREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAEN 682 (813)
T ss_pred HHHHHHHhCcchhceeccCCcHHHHHHcCCCCccccccchheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcE-EEEeCCCc
Q psy8865 616 GNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSIS 694 (749)
Q Consensus 616 Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt-~YY~rs~~ 694 (749)
||+|+++.||+++|.+|+|||||+|+++|+|||+||||||||||+|||+++++.++|.++|++||++|||| +|||||++
T Consensus 683 gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~IDQsqS~nl~l~~~t~~~i~~~~~~Awk~GLKt~~YY~R~~~ 762 (813)
T PLN02437 683 GSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRA 762 (813)
T ss_pred CCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHcCCCeeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999 99999999
Q ss_pred ccccccccccccccccccchhcccccC-c-h--hhhhccccccccccccCCCCc-cccCC
Q psy8865 695 ANYAKKSNFEMGIDSVNLDEISIKGYN-K-N--LQEIKNNKKCLINSEINDVNE-CESCQ 749 (749)
Q Consensus 695 ~~~~~~~t~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~-c~~c~ 749 (749)
+++++|+||+++. ++.... +.+ + . ++.+..+.+|++ ++|+ ||+||
T Consensus 763 ~~~~~~~~v~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~c~~c~ 812 (813)
T PLN02437 763 AADAIKFTVDTAS----LKPSAT-GVAAPEEEDVETKMAQMVCSL-----DNREECLACG 812 (813)
T ss_pred cccceEEecchhh----hccccc-cccCccccccchhhhhccCCC-----CCcccccccc
Confidence 9999999998643 221110 000 1 1 112223478999 6777 99998
No 6
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.6e-181 Score=1578.77 Aligned_cols=643 Identities=48% Similarity=0.812 Sum_probs=600.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH-hcHHHHHhhccccccCCCCh
Q psy8865 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNLSLLSNALLPERDLQFNY 80 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~-~~~~~l~~~i~~~rD~~f~y 80 (749)
.+||||+++||||++.+|||++.+.. . + ..+..++.++++.+.++..+.+ +++++|+++|+++||+.|+|
T Consensus 69 ~~~pdy~~~AaRl~~~~l~k~~~~~~-~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y 139 (789)
T PRK08447 69 IDRPNWTFVAARLFLYDLYHKVSGFT-G-------Y-NHLKEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDLQFNY 139 (789)
T ss_pred ccCccHHHHHHHHHHHHHHHHhhccc-c-------H-HHHHHHHHHHhhcCccchhhhccccHHHHHHHhCHHHhcCCCH
Confidence 58999999999999999999996421 1 1 2466777888778888877654 89999999999999999999
Q ss_pred hhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccceeec
Q psy8865 81 LGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLS 159 (749)
Q Consensus 81 ~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl~ 159 (749)
+|+++|++|||+|+ +|+++|+||+||||||++||.+|.++.+++++||++||+++|+||||||+||||+++|||||||+
T Consensus 140 ~g~~~l~~rYllk~~~g~~~E~pq~~~mrVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtL~Nagt~~~qlsSCFl~ 219 (789)
T PRK08447 140 LGIKTLYDRYLIKDRNNNPIELPQHMFMAIAMFLAQNELDPQKWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIG 219 (789)
T ss_pred HHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHcCCeecCCccccccCCCCCCeeeeEeC
Confidence 99999999999997 68889999999999999999988778899999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeC
Q psy8865 160 TVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239 (749)
Q Consensus 160 ~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~ 239 (749)
+++|||+|||++++++|+++|.|||||+|||+|||+|++|+|++|.|+|||||||+||+++.+|+|||+||||+|+||++
T Consensus 220 ~v~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~~k~~n~~~~~v~QgG~RrGA~avyL~~ 299 (789)
T PRK08447 220 STPDNIEGIFDSYKEMALLSKYGGGIGWDWSKVRAMGSYIDGHKNAAGGIIPFLKITNDIAIAVDQLGTRKGAIAVYLEP 299 (789)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCeEeecccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHHhCCccccceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCc
Q psy8865 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKI 319 (749)
Q Consensus 240 wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~ 319 (749)
|||||++||++|+++|++++|++++|+||||||+|||||++|++|+||+|+++|+|.++||++|+++|.+||+.. + +
T Consensus 300 wHpDI~~FL~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~~e~~~--~-~ 376 (789)
T PRK08447 300 WHMDISDFIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFDPYECKDLTELYGEEFEKRYLEYEKDE--K-I 376 (789)
T ss_pred CCccHHHHHHHhhcccchhhhhhcCeeeeeeCHHHHHHHHcCCCEEEecCCccchhhhhhChHHHHHHHHHHhcc--C-e
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998742 2 2
Q ss_pred eeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCC-------------------
Q psy8865 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKN------------------- 380 (749)
Q Consensus 320 ~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~------------------- 380 (749)
.+++|+||+||++|++++||||+|||+|+|+||++||++|.|+|++||||+||+||++++
T Consensus 377 -~~~~V~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~y~~~ 455 (789)
T PRK08447 377 -IKEYINAKELWKKILTNYFETGLPFLCFKDNANRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKIEFEDGSIEFFEEE 455 (789)
T ss_pred -eeEEEeHHHHHHHHHHHHHHHCCceEEEhhhhhhcCCCCCCCeeeecccccccCCCCCccccccccccccccccccccc
Confidence 479999999999999999999999999999999999999999999999999999987542
Q ss_pred -------------------------------------cccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhc
Q psy8865 381 -------------------------------------EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423 (749)
Q Consensus 381 -------------------------------------e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~ 423 (749)
+++|||||||||++|+ |+++|+++|++||||||||||+
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~vCNLgSiNL~~~v-----~~~~l~~~v~~avR~LDnVID~ 530 (789)
T PRK08447 456 ELVTVDSGITKKAKKITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLSKIN-----TKEDIERVVPIAIRMLDNVIDL 530 (789)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCeeEEecHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999986 6899999999999999999999
Q ss_pred cCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccC
Q psy8865 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQ 503 (749)
Q Consensus 424 ~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~ 503 (749)
|.||+|+++++|+++|+||||+|||||+|+++||||+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++
T Consensus 531 n~yP~~~~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLAkErG~fp~f~~S~~~~ 610 (789)
T PRK08447 531 NFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFEGSNWSK 610 (789)
T ss_pred ccCChHHHHHHHhcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHH---hcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhhee
Q psy8865 504 GILPQDSLKLLEKE---RGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKS 580 (749)
Q Consensus 504 G~lp~d~~~~~~~~---r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~ 580 (749)
|+||+|.|...... ++ .. ....+||++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|+
T Consensus 611 G~~~~d~~~~~~~~~~~~~-~~----~~~~~dW~~L~~~I~k~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s~~~~~~ 685 (789)
T PRK08447 611 GIFPIDKANEEAKKLVERG-GL----FDSACDWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEE 685 (789)
T ss_pred Cccchhhhhchhhhhhccc-cc----ccchhhHHHHHHHHHHhCccccceeeeCChHHHHHHhCCCcCcCcccchheeEE
Confidence 99999987643210 01 00 013579999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcc
Q psy8865 581 NLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660 (749)
Q Consensus 581 ~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~ 660 (749)
+.+|+|+++||+|. ++++.+|+|||||+|+|+|+|+|+||||||||||+
T Consensus 686 ~~~g~~~~~~p~L~-------------------------------~~~~~~y~tA~ei~~~~~I~~~A~rQk~IDQsiS~ 734 (789)
T PRK08447 686 NLSGLIPVVVPNLS-------------------------------PETWQYYTPAYDLDQKDLIKAAAVRQKWIDQGQSL 734 (789)
T ss_pred eccceeEeeCCCCC-------------------------------hHHHHHhchHHhCCHHHHHHHHHHHhcccchhhcC
Confidence 99999999998753 23456899999999999999999999999999999
Q ss_pred eeeeC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCccccc
Q psy8865 661 NIYIS--NKSGKKLDETYKLAWLRGLKTTYYLRSISANYA 698 (749)
Q Consensus 661 nl~~~--~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~~~ 698 (749)
|||++ .++.++|.++|++||++||||+||+|+++...+
T Consensus 735 nl~~~~~~~t~~~l~~~y~~Awk~GlKt~YY~Rt~~~~~~ 774 (789)
T PRK08447 735 NIFLSLDKASGKYLNEIYTLAWKLGLKSTYYLRSESPESE 774 (789)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeccchhhc
Confidence 99998 478999999999999999999999999997543
No 7
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.1e-177 Score=1546.40 Aligned_cols=635 Identities=36% Similarity=0.600 Sum_probs=592.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH-h---cHHHHHhhccccccCC
Q psy8865 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-F---NLSLLSNALLPERDLQ 77 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~l~~~i~~~rD~~ 77 (749)
.+||||++|||||++.+|||++..++... ....|. .|.+++.++++.|+|++++.+ | |+++|+++|+++||+.
T Consensus 79 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~ 155 (761)
T PRK09209 79 LEEPEWTFFAARLYLNRLYKRASRNRFYD--ASEKYG-SFVGLQESLAERGIYSNDLLKRYSKEELIEAGKMIDPERDKL 155 (761)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHhccccc--chhhhh-hHHHHHHHHHhcCcccHHHHHhcCHHHHHHHHHHhhhhcccC
Confidence 58999999999999999999998653221 123444 588899999999999999866 5 9999999999999999
Q ss_pred CChhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc--CcHHHHHHHHHHHhcCCccccCccccccCccccccc
Q psy8865 78 FNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES--NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLS 154 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~--~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qls 154 (749)
|+|+|+++|++|||+|+ +|+++|+||++|||||++||.+|. .+.+++++||++||+++|+||||||+||||+++|||
T Consensus 156 ~~y~g~~~l~~rYllk~~~~~~~E~pq~~~mrVA~~la~~e~~~~r~~~~~~fY~~Ls~~~~~~aTPtl~NaGt~~~qls 235 (761)
T PRK09209 156 FTYIGLYLLADRYLATDSDRNVYELPQERWLTIALYLMQNEPRERRMQLVKEAYWALSNLYMTVATPTLANAGKVGGQLS 235 (761)
T ss_pred CCHHHHHHHHHhhCCcCCCCCEEECHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHcCcccCCCHHHhcCCCCCCCee
Confidence 99999999999999997 588899999999999999998863 468899999999999999999999999999999999
Q ss_pred ceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceE
Q psy8865 155 SCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234 (749)
Q Consensus 155 SCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~ 234 (749)
||||++|+|||+|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+|+|||||+||+++.+|+|||+||||+|
T Consensus 236 SCFl~~v~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~n~~~~~v~QgG~RrGA~a 315 (761)
T PRK09209 236 SCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGKVRSRGSDIRGFKGVSSGVIPWIKQLNNTAVSVDQLGQRKGAIA 315 (761)
T ss_pred eeEeCCccccHHHHHHHHHHHHHHHHcCCeEEecccccCCCCCcccCCCCCCcCHHHHHHHHHHHHHHHHcCCccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCC-----ccchhhch-----HHH
Q psy8865 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP-----DLHNKFGK-----EFE 304 (749)
Q Consensus 235 ~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p-----~L~d~yg~-----~Fe 304 (749)
+||++|||||++||++|+|+|++++|++|+|+||||||+||+||++|++|+||+|+++| +|+|+||+ +|+
T Consensus 316 vyL~~wHpDI~~FL~~K~~~gde~~R~~~l~~~v~ipD~FM~~V~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~g~f~ 395 (761)
T PRK09209 316 VYLDVWHKDIESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFDPHEVKKVMGWYLEDFYDEKKGDGSFR 395 (761)
T ss_pred EEEeCCcccHHHHHHhhcccccHHHhhhcchhhhccCHHHHHHHHCCCCEEEECccccccccCccHHHhhccccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999998 69999997 899
Q ss_pred HHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCC----
Q psy8865 305 ESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKN---- 380 (749)
Q Consensus 305 ~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~---- 380 (749)
++|++|++. +.+ .+++|+||+||++|++++++||+|||+|+|+||++||++|.|+|++||||+||+||++++
T Consensus 396 ~~Y~~~~~~---~~~-~~~~v~Ar~Lw~~I~~s~~eTG~Pyi~f~D~~N~~np~~~~G~I~~SNlC~EI~q~~~p~~~~~ 471 (761)
T PRK09209 396 EKYEECVAD---ERL-SRKTVKAIDIMKRIMVSQLETGNPFMFYRDEVNRMNPNKHEGMIYSSNLCTEIMQNMSPTVMIQ 471 (761)
T ss_pred HHHHHHHhC---cCc-eeeeecHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCcccCCeeEeecCCcccccCCCcccccc
Confidence 999999864 233 479999999999999999999999999999999999999999999999999999987653
Q ss_pred ---------------cccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCccccc
Q psy8865 381 ---------------EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGI 445 (749)
Q Consensus 381 ---------------e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv 445 (749)
+++|||||||||++|++ .++|+++|+++|||||||||+|.||+|+++++|+++|+||||+
T Consensus 472 ~~~~~~~~~~~~~~g~~~vCNL~SiNL~~~v~-----~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~R~IGLGv 546 (761)
T PRK09209 472 EIISGGQIVITKQPGDFVVCNLSSINLGRAVT-----ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGT 546 (761)
T ss_pred ccccccccccccccCCceEEEChHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHhccccccch
Confidence 36899999999999984 4799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhccccccc
Q psy8865 446 MGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKV 525 (749)
Q Consensus 446 ~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~ 525 (749)
|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|++ ++.+. +
T Consensus 547 ~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~g~~-~~~~~---------~--- 613 (761)
T PRK09209 547 FGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDWQTGEY-FERRG---------Y--- 613 (761)
T ss_pred hhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhhcC---------C---
Confidence 9999999999999999999999999999999999999999999999999999999999987 33321 1
Q ss_pred CchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChH
Q psy8865 526 NMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDE 605 (749)
Q Consensus 526 ~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~ 605 (749)
...+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|+..+|.+.+++
T Consensus 614 ---~~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s~~y~r~~~~~~~~~~~--------------- 675 (761)
T PRK09209 614 ---NSPQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVTA--------------- 675 (761)
T ss_pred ---chhhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchhhHhhhhhccceeeccC---------------
Confidence 13589999999999999999999999999999999999999999999999998877766543
Q ss_pred HHHhhhhhcCCCcccccCCChhHHhhc-ccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcC
Q psy8865 606 SMIANLKYFDGNLSQISRIPDDLRKIY-ATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRG 683 (749)
Q Consensus 606 ~~~~~i~~~~Gsvq~i~~ip~~~k~~y-~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~G 683 (749)
+.||++.+.+| +|||||+|+|+|+|+|+||||||||||+|||+++ .+.++|.++|++||++|
T Consensus 676 ----------------p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~IDQsiS~nl~~~~~~~~~~l~~~y~~Awk~G 739 (761)
T PRK09209 676 ----------------PDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRASELLDLHMTAWKEG 739 (761)
T ss_pred ----------------CCCChhHHHHHhhhHhhCCHHHHHHHHHHHcccccccccCceeCCCCCCHHHHHHHHHHHHHhC
Confidence 44678889999 9999999999999999999999999999999986 46899999999999999
Q ss_pred CcEEEEeCCCcc
Q psy8865 684 LKTTYYLRSISA 695 (749)
Q Consensus 684 lKt~YY~rs~~~ 695 (749)
|||+||+||++.
T Consensus 740 lKt~YY~Rt~~~ 751 (761)
T PRK09209 740 LKTTYYVRSTDI 751 (761)
T ss_pred CCeEEEeeccCc
Confidence 999999999765
No 8
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.8e-176 Score=1536.74 Aligned_cols=633 Identities=41% Similarity=0.670 Sum_probs=587.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH----hcHHHHHhhccccccCC
Q psy8865 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE----FNLSLLSNALLPERDLQ 77 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~----~~~~~l~~~i~~~rD~~ 77 (749)
.+||||++|||||++.+|||++.+++.... ..|. .|.++++++++.|+|++++.+ .++++|+++|+++||+.
T Consensus 82 ~~~p~~~~~Aarl~~~~l~k~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~ 157 (764)
T PRK07088 82 KTNPNWQYVAARLYVFDLYKEARINRHYNS---FGYG-DYYELVKKLVEEKLYGEYLLQNYSKEEIKELEKYIKPERDFL 157 (764)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHhcccccc---cchh-hHHHHHHHHHhcchhhHHHHHhcCHHHHHHHHHHhhhccccC
Confidence 689999999999999999999976432111 1144 377888999999999998865 49999999999999999
Q ss_pred CChhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc--CcHHHHHHHHHHHhcCCccccCccccccCccccccc
Q psy8865 78 FNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES--NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLS 154 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~--~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qls 154 (749)
|+|+|+++|++|||+|+ +|.++|+||+||||||++||..|. ++.+++++||++||+++|+||||||+||||+++|||
T Consensus 158 ~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~paTPtl~NaGt~~~qls 237 (764)
T PRK07088 158 FNYEGLKLLADRYLVKGFNREILELPQERFMGIAMHLAIPEGKEKRVYYAKKFYDLLSELKATVATPTLSNAGTPFYQLS 237 (764)
T ss_pred CCHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHcCCeecCCcchhcCCCCCCCcc
Confidence 99999999999999997 788899999999999999998773 568899999999999999999999999999999999
Q ss_pred ceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceE
Q psy8865 155 SCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234 (749)
Q Consensus 155 SCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~ 234 (749)
||||++|+|||+|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|
T Consensus 238 SCFl~~v~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~lk~~n~~~~~v~QgG~R~GA~a 317 (764)
T PRK07088 238 SCFISVVDDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGFKNASGGVIPWIKLYNDTAIAVDQLGKRKGGAA 317 (764)
T ss_pred ceeecCccccHHHHHHHHHHHHHHHhhCCeEEecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCC-----ccchhhch----HHHH
Q psy8865 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP-----DLHNKFGK----EFEE 305 (749)
Q Consensus 235 ~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p-----~L~d~yg~----~Fe~ 305 (749)
+||++|||||++||++|+++|++++|++++|+||||||+|||||++|++|+||+|+++| +|.|+||+ +|++
T Consensus 318 vyL~~wHpDI~~FL~lK~~~g~e~~r~~~l~~~v~ipD~FM~~v~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~ef~~ 397 (764)
T PRK07088 318 ITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFDPHEIKKVKGYSLEDYYDEEDRKEFTK 397 (764)
T ss_pred EEEeCCCccHHHHHHhccccchhHHHHhhChhhhccCHHHHHHHHcCCCeEEECccccccccCccHHHHhccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 69999999 9999
Q ss_pred HHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCC-----
Q psy8865 306 SYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKN----- 380 (749)
Q Consensus 306 ~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~----- 380 (749)
+|.+||+.. .+ .+++|+||+||++|++++++||+|||+|+|+||+++|++|.|+|++||||+||+||++++
T Consensus 398 ~Y~~~~~~~---~~-~~~~v~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlCtEI~q~~~~~~~~~~ 473 (764)
T PRK07088 398 KYLECEEDT---NI-PRRTVPVLDIMKKIMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESELLEE 473 (764)
T ss_pred HHHHHHhcc---cc-eeEEEeHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCeeeecCCchHhhccCCccccccc
Confidence 999998752 23 479999999999999999999999999999999999999999999999999999988753
Q ss_pred ------------------cccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcc
Q psy8865 381 ------------------EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVG 442 (749)
Q Consensus 381 ------------------e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IG 442 (749)
+++|||||||||++ ||+++|+++|++||||||||||+|.||+|+++++|+++|+||
T Consensus 474 ~~~~~~~~~~~~~~~~~g~~~vCNL~SinL~~------~d~~~l~~~v~~avr~LDnVID~n~yP~~~a~~~n~~~R~IG 547 (764)
T PRK07088 474 EIIDENGYYEVVQKIKAGDMVTCNLNSIVLGN------VDDEELEEVIPTQIRMLDNVISLNYYPVPEAEITSDKYRAIG 547 (764)
T ss_pred ccccccccccccccccCCCceEEEcHHHHHhh------hcHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCccc
Confidence 34899999999986 589999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccc
Q psy8865 443 LGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKY 522 (749)
Q Consensus 443 lGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~ 522 (749)
||||||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.+ ++.+. +
T Consensus 548 LGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~~S~~~~g~~-~~~~~---------~ 617 (764)
T PRK07088 548 LGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKGSEWETGKY-FERRG---------Y 617 (764)
T ss_pred eeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhccc---------c
Confidence 9999999999999999999999999999999999999999999999999999999999999986 33221 1
Q ss_pred cccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCC
Q psy8865 523 LKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGL 602 (749)
Q Consensus 523 ~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~ 602 (749)
...+|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|... |.++.
T Consensus 618 ------~~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~~~~~r~~~-g~~~~-------------- 676 (764)
T PRK07088 618 ------NSERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFKRFFMEEKK-GSFTP-------------- 676 (764)
T ss_pred ------ccccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhhhHhhhhcC-Cceee--------------
Confidence 135899999999999999999999999999999999999999999999987532 32211
Q ss_pred ChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHH
Q psy8865 603 WDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWL 681 (749)
Q Consensus 603 ~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk 681 (749)
+.++.+|++.+.+|+|||||+|+|+|+|+|+||||||||||+|||+++ ++.++|.++|++||+
T Consensus 677 ----------------~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~IDqsiS~nl~~~~~~t~~~l~~~y~~Awk 740 (764)
T PRK07088 677 ----------------KTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPEYKAKQILNLYIEAWK 740 (764)
T ss_pred ----------------cCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHHHHHHHHH
Confidence 124567888889999999999999999999999999999999999985 699999999999999
Q ss_pred cCCcEEEEeCCCcc
Q psy8865 682 RGLKTTYYLRSISA 695 (749)
Q Consensus 682 ~GlKt~YY~rs~~~ 695 (749)
+||||+||+|+++.
T Consensus 741 ~GlKt~yY~R~~s~ 754 (764)
T PRK07088 741 QGVKTIYYVRNKSL 754 (764)
T ss_pred cCCCEEEEEecCCc
Confidence 99999999999776
No 9
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=5.6e-176 Score=1531.58 Aligned_cols=647 Identities=29% Similarity=0.467 Sum_probs=605.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH-h---cHHHHHhhccccccCCC
Q psy8865 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-F---NLSLLSNALLPERDLQF 78 (749)
Q Consensus 3 ~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~l~~~i~~~rD~~f 78 (749)
+||||++|||||++.+|||++++.+.. ..|.++++.+++.|+|++++.+ | ++++|+++|+++||+.|
T Consensus 70 ~~pdy~~~Aarl~~~~l~k~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~f 140 (758)
T PRK09103 70 DAPDYQYLAARLAIFHLRKKAYGQFEP---------PALYDHVVKMVEMGKYDKHLLEDYTEEEFDQMDTFIDHWRDMNF 140 (758)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHccccc---------hhHHHHHHHHHHcCchhHHHHHHcCHHHHHHHHHHhchhhccCC
Confidence 899999999999999999999875421 1477888899999999999876 6 99999999999999999
Q ss_pred ChhhHHHHHHhccccc--CCeEeecHHHHHHHHHhHhhcccc--CcHHHHHHHHHHHhcCCccccCccccccCccccccc
Q psy8865 79 NYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMGLSLNES--NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLS 154 (749)
Q Consensus 79 ~y~g~~~l~~rYllk~--~~~~~E~pq~~~mRVA~~la~~e~--~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qls 154 (749)
+|+|+++|++|||+|+ +|+++|+||+||||||++||.++. .+.+++++||++||+++|+||||+|+||||+++|||
T Consensus 141 ~y~~~~~l~~rYllk~~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~~~~fy~~ls~~~~~~~Tp~l~naGt~~~qls 220 (758)
T PRK09103 141 SYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFS 220 (758)
T ss_pred CHHHHHHHhhceeccccCCCCcccCHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHhCCcCCCCchhcCCCCCCCCee
Confidence 9999999999999985 678899999999999999998653 367899999999999999999999999999999999
Q ss_pred ceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceE
Q psy8865 155 SCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234 (749)
Q Consensus 155 SCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~ 234 (749)
|||+++|+||++||+++++++|++++.|||||+|||+|||+|++|+|++|.|+|||||||+||+++.+|+|||+||||+|
T Consensus 221 SCFl~~v~Dsl~~I~~~~~~~a~~~s~gGGiG~~~s~lR~~Gs~I~g~~g~ssG~vp~mk~~d~~~~~v~QgG~RrGA~~ 300 (758)
T PRK09103 221 SCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAAT 300 (758)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCccCCCCCCCCChHHHHHHHHHHHHHHHcCCCCCcceE
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhh---chHHHHHHHHHH
Q psy8865 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF---GKEFEESYILYE 311 (749)
Q Consensus 235 ~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~y---g~~Fe~~Y~~ye 311 (749)
+||++|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|++.| |++|++.|.+||
T Consensus 301 vyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~ef~~~Y~~~e 380 (758)
T PRK09103 301 LFYPIWHLEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDVPGLYDAFFADQDEFERLYTKYE 380 (758)
T ss_pred EEecCCCccHHHHHHhcccCCchhhhHhhCchhhccCHHHHHHHHcCCCeEEeCccccccccccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 589999999998
Q ss_pred HhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCC-CccceEeeeccccccccCCCC--------Ccc
Q psy8865 312 NQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ-QHVGIIHSSNLCTEITLNTSK--------NEI 382 (749)
Q Consensus 312 ~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~-~~~g~I~~SNlC~EI~l~~~~--------~e~ 382 (749)
+. |++ .+++|+||+||++|+++++|||.|||+|+|+||+++|+ +|.|+|++||||+||+||+++ +|+
T Consensus 381 ~~---~~~-~~~~v~AreLw~~I~~~~~etG~pfi~fkD~~N~~~p~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~~e~ 456 (758)
T PRK09103 381 QD---DSI-RKKRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEI 456 (758)
T ss_pred hc---CCe-eeEEEeHHHHHHHHHHHhcCcCCceeeechhhhhcCCCCccCCeeeecCcccccccCCcccccccccCCCe
Confidence 65 443 37999999999999999999999999999999999996 699999999999999999885 789
Q ss_pred cccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCH
Q psy8865 383 GVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSK 462 (749)
Q Consensus 383 avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ 462 (749)
+|||||||||++| +|+++|+++|++||||||||||+|.||+|+++++|+++|+||||+|||||+|+++||||+|+
T Consensus 457 ~vCNLgSINL~~~-----~d~~~l~~~v~~avr~LDnVID~~~yP~~~~~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~ 531 (758)
T PRK09103 457 ALCTLSAFNLGAI-----NSLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGVRYSDG 531 (758)
T ss_pred eEEEhHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcCccccchHHHHHHHHHcCCCCCCH
Confidence 9999999999998 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHH
Q psy8865 463 EAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542 (749)
Q Consensus 463 ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~ 542 (749)
||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|+||+|.|...... ..+....+||++||++|++
T Consensus 532 eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~~~------~~~~~~~~dW~~Lr~~i~~ 605 (758)
T PRK09103 532 SANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLDA------ICNEPLHYDWETLREEIKT 605 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhccc------cccccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987542110 1223346899999999999
Q ss_pred hCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCccccc
Q psy8865 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQIS 622 (749)
Q Consensus 543 ~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~ 622 (749)
||+|||+++|||||||||+|+|+|+||||+|+++|+|++.+|.+.+++|.+.
T Consensus 606 ~GlRNs~l~AiaPTgS~S~i~g~s~giEP~~s~~~~k~~~~g~~~~~~p~~~---------------------------- 657 (758)
T PRK09103 606 HGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDYE---------------------------- 657 (758)
T ss_pred hCccccceeecCCcHHHHHHhCcCCCcCccccceeeeeccCceeeecCCCHH----------------------------
Confidence 9999999999999999999999999999999999999999999888877542
Q ss_pred CCChhHHhhcccccCC-CHHHHHHHHHHHcccccccCcceeeeCC-------CCHHHHHHHHHHHHHcCCcEEEEeCCCc
Q psy8865 623 RIPDDLRKIYATAFEI-SPNWIIEAGSVRQKWIDQSQSLNIYISN-------KSGKKLDETYKLAWLRGLKTTYYLRSIS 694 (749)
Q Consensus 623 ~ip~~~k~~y~tA~ei-~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-------~~~~~l~~~~~~Awk~GlKt~YY~rs~~ 694 (749)
+++..|+++|+| +|+++|+|+|+||||||||||+|||+++ ++.++|.++|++||++||||+||+||++
T Consensus 658 ----~~~~~y~~~~~i~~~~~~I~~~A~rQ~~VDQsqS~nl~~~~~~~~~~~~t~~~l~~~~~~Aw~~GlKT~YY~rs~~ 733 (758)
T PRK09103 658 ----RLKDAYELLWEMPNNDGYLQLVGIMQKFVDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKTLYYHNTRD 733 (758)
T ss_pred ----HHHHHHHHHHhccChHHHHHHHHHHhhhcchhhcceeeecccccccCCCCHHHHHHHHHHHHHhCCceEeecCchh
Confidence 245678999999 5899999999999999999999999842 5899999999999999999999999999
Q ss_pred ccccccccccc
Q psy8865 695 ANYAKKSNFEM 705 (749)
Q Consensus 695 ~~~~~~~t~~~ 705 (749)
++++.|+|+..
T Consensus 734 ~~~~~~~~~~~ 744 (758)
T PRK09103 734 GAEDAQDDLQP 744 (758)
T ss_pred hhhhhhhhccc
Confidence 99999999753
No 10
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=8.1e-176 Score=1531.57 Aligned_cols=643 Identities=30% Similarity=0.482 Sum_probs=601.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH-h---cHHHHHhhccccccCC
Q psy8865 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-F---NLSLLSNALLPERDLQ 77 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~l~~~i~~~rD~~ 77 (749)
.+||||++|||||++.+|||++++++. ...|.++++++++.|+|++++.+ | ++++|+++|+|+||+.
T Consensus 70 ~~~pdy~~~AaRl~~~~l~k~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~ 140 (753)
T PHA02572 70 VEEPDYQYVAARLLMFALRKQVYGQFE---------PPSFIDHISKCVNEGKYDPEILSKYSAEEITYLESFIDHDRDFE 140 (753)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcccc---------hhhHHHHHHHHHhcCchhHHHHHHcCHHHHHHHHHhhchhhccC
Confidence 489999999999999999999987542 12577888899999999999875 5 9999999999999999
Q ss_pred CChhhHHHHHHhccccc--CCeEeecHHHHHHHHHhHhhcccc--CcHHHHHHHHHHHhcCCccccCccccccCcccccc
Q psy8865 78 FNYLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMGLSLNES--NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQL 153 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~--~~~~~E~pq~~~mRVA~~la~~e~--~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~ql 153 (749)
|+|+|+++|++|||+|+ +|+++|+||++|||||++||..|. ++.+++++||++||+++|+||||||+||||+++||
T Consensus 141 f~y~g~~~l~~rYllk~~~~~~~~E~pq~~~~rVA~~la~~e~~~~r~~~a~~fy~~ls~~~~~paTPtl~naGt~~~ql 220 (753)
T PHA02572 141 FTYAGAMQLKEKYLVQDRSTGEIYETPQFAYMLIAMALHQDEPKEDRLEHVIRFYNAVSTRKISLPTPIMAGVRTPTRQF 220 (753)
T ss_pred CCHHHHHHHHHhhCCcCCCCCceecCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCcCCCChhhhcCCCCCCcc
Confidence 99999999999999996 477899999999999999999873 47889999999999999999999999999999999
Q ss_pred cceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccce
Q psy8865 154 SSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233 (749)
Q Consensus 154 sSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~ 233 (749)
|||||+.|+||++||+++++++|.+++.|||||+|+|+|||+|++|+|++|+|+|+|||||+||+++.+|+|||+||||+
T Consensus 221 sSCFl~~v~Dsl~~I~~~~~~~a~~~sk~gGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~d~~~~~v~QgG~R~GA~ 300 (753)
T PHA02572 221 SSCVVIESGDSLDSINKTAMAIVKYISKRAGIGINAGMIRAEGSKIRGGEVRHTGVIPFWKHFQTAVKSCSQGGIRGGAA 300 (753)
T ss_pred cceeeCCCCCCHHHHHHHHHHHHHHHHhCCeEEeeccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHhcCCcccCce
Confidence 99999999999999999999999766667899999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCc-cchhh---chHHHHHHHH
Q psy8865 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD-LHNKF---GKEFEESYIL 309 (749)
Q Consensus 234 ~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~-L~d~y---g~~Fe~~Y~~ 309 (749)
|+||++|||||++||++|+++|+++.|++++|+||||||+|||||++|++|+||+|+++++ |++.| |++|+++|++
T Consensus 301 ~vyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~w~Lf~P~~~~~~l~~~~~~~~~ef~~~Y~~ 380 (753)
T PHA02572 301 TAYYPIWHLEVEDLLVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFSPHDVGGELYDAYFADQDRFRELYEA 380 (753)
T ss_pred EEEEeCCCcCHHHHHHHhcccCcchhhhhhhhhHhhcCHHHHHHHHcCCCEEEeCCccCccchhhhhccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999 5999999999
Q ss_pred HHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCC-------Ccc
Q psy8865 310 YENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSK-------NEI 382 (749)
Q Consensus 310 ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~-------~e~ 382 (749)
||+. |.+ .+++|+||+||++|+++++|||+|||+|+|+||+++|+ .|+|++||||+||+|++++ +|+
T Consensus 381 ~e~~---~~~-~~~~v~AreLw~~I~~~~~etG~Pyi~f~D~~N~~~~~--~g~I~~SNlC~Ei~l~~~~~~~~d~~~e~ 454 (753)
T PHA02572 381 LEKD---PSV-RKKRIKAQELFLLLLKERSETGRIYIMFIDHCNNHSPF--KDPIRQSNLCCEIALPTKPLNHIDGEGEI 454 (753)
T ss_pred HHhc---ccc-eeEEEeHHHHHHHHHHHHhccCCcceEeehhhhhcCcc--cCceeecCCCccccCCCCccccccCCCce
Confidence 9875 333 37999999999999999999999999999999999998 7999999999999999997 899
Q ss_pred cccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCH
Q psy8865 383 GVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSK 462 (749)
Q Consensus 383 avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ 462 (749)
++||||||||++| ||++.|+++|+++|||||||||++.||++++ ++|+++|+||||+|||||+|+++|++|+|+
T Consensus 455 ~~CNL~SINL~~~-----~D~~~l~~~v~~avr~LDnVID~~~yP~~~~-~~~~~~R~IGLGv~Glad~L~~lgi~Y~S~ 528 (753)
T PHA02572 455 ALCTLSAIVLGNF-----EDQDEIEELAEVAVRALDNLLDYQDYPVPAA-LKAKKRRSLGVGVTNYAHYLAKNFASYEDA 528 (753)
T ss_pred EEEECHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHhccCCChHHH-HhhhhcCccccchhHHHHHHHHCCCCcCCH
Confidence 9999999999998 5899999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHH
Q psy8865 463 EAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKK 542 (749)
Q Consensus 463 ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~ 542 (749)
|| +|+++|||+|+|+|++||++||+|+|+||.|++|+|++|++|+|.|+...+. .++....+||++||++|++
T Consensus 529 eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~~~------~~~~~~~~dW~~L~~~i~~ 601 (753)
T PHA02572 529 NA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDE------LVAPKYNCDWESLREDLKK 601 (753)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchhhh------hcccchhhhHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999987642211 0122346899999999999
Q ss_pred hCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCccccc
Q psy8865 543 FGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQIS 622 (749)
Q Consensus 543 ~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~ 622 (749)
||||||+++|||||||||+|+|+|+||||+|+++|+|++.+|+|+++||++.
T Consensus 602 ~GlRNs~l~AiaPT~S~S~i~g~s~giEP~~s~~~~r~~~~G~~~~~~p~l~---------------------------- 653 (753)
T PHA02572 602 YGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKEGPFNQVVPNVE---------------------------- 653 (753)
T ss_pred hCccccceeeeCCcHHHHHHhCCCCccCcccccEEEEEecCceEEEeCCCHH----------------------------
Confidence 9999999999999999999999999999999999999999999999999752
Q ss_pred CCChhHHhhcccccCC---CHHHHHHHHHHHcccccccCcceeeeCCC-------CHHHHHHHHHHHHHcCCcEEEEeCC
Q psy8865 623 RIPDDLRKIYATAFEI---SPNWIIEAGSVRQKWIDQSQSLNIYISNK-------SGKKLDETYKLAWLRGLKTTYYLRS 692 (749)
Q Consensus 623 ~ip~~~k~~y~tA~ei---~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~-------~~~~l~~~~~~Awk~GlKt~YY~rs 692 (749)
+++.+|+||||| +|+++|+|||+||||||||||+|||+.++ +.++|.++|++||++||||+||+||
T Consensus 654 ----~~~~~ykta~~i~~~~~~~~i~~~A~rq~~IDQsqS~nl~~~~~~~~~~~~~~~~l~~~~~~Aw~~GlKT~YY~rt 729 (753)
T PHA02572 654 ----TLKDLYDLLWDLAKKGNKGYLTQVAIMQKFVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKTLYYHNT 729 (753)
T ss_pred ----HHHHHHHhHHHhcccChHHHHHHHHHHhccCchhhcceeeecCCcCcccccCHHHHHHHHHHHHHhCCceEeecCc
Confidence 245689999999 99999999999999999999999999643 5789999999999999999999999
Q ss_pred Cccccccccccc
Q psy8865 693 ISANYAKKSNFE 704 (749)
Q Consensus 693 ~~~~~~~~~t~~ 704 (749)
++++++|...+.
T Consensus 730 ~~~~~~~~~~~~ 741 (753)
T PHA02572 730 RDGKGTEDYEIE 741 (753)
T ss_pred cccccccccccc
Confidence 999988866554
No 11
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=1.2e-173 Score=1534.26 Aligned_cols=631 Identities=38% Similarity=0.632 Sum_probs=586.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH----hcHHHHHhhccccccCCC
Q psy8865 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE----FNLSLLSNALLPERDLQF 78 (749)
Q Consensus 3 ~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~----~~~~~l~~~i~~~rD~~f 78 (749)
+||||++|||||++.+|||++.... .+ ..| ..|..++..+++.|+|++++.+ .++++|+++|+++||+.|
T Consensus 163 ~~p~~~~~Aarl~~~~l~k~~~~~~-~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~~ 236 (842)
T PRK12364 163 EAPDWEFIAARLLMLQFSKKLGKSL-EK----LGI-HSFYDKIKYLTEEGLYGSYILEHYSREEIEEAAGFIDPERDKLF 236 (842)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhc-cc----cch-HHHHHHHHHHHhcCchhHHHHHHhcHHHHHHHHHHhccccccCC
Confidence 4799999999999999999986422 11 122 2467788999999999988764 499999999999999999
Q ss_pred ChhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc-CcHHHHHHHHHHHhcCCccccCccccccCcccccccce
Q psy8865 79 NYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES-NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSC 156 (749)
Q Consensus 79 ~y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~-~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSC 156 (749)
+|+|+++|++|||+|+ +|+++|+||++|||||++||..|. ++.+++++||++||+++|+||||||+||||+++|||||
T Consensus 237 ~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rvA~~la~~e~~~~~~~~~~fy~~ls~~~~~~aTPtl~Nagt~~~qlsSC 316 (842)
T PRK12364 237 TYSGLDLLLKRYVIRTHSHEPLESPQEMFLGIALHLAMPEKQDRMGWVKRFYDMLSKLKVTMATPTLSNARKPFHQLSSC 316 (842)
T ss_pred CHHHHHHHHHhhCCcCCCCCeeeCHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHcCCcccCCHHHhcCCCCCCCeeee
Confidence 9999999999999997 588899999999999999998875 68889999999999999999999999999999999999
Q ss_pred eeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEe
Q psy8865 157 YLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236 (749)
Q Consensus 157 fl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~y 236 (749)
||++|+|||+|||++++++|+++|.|||||+|||+|||+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|+|
T Consensus 317 Fl~~v~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~vy 396 (842)
T PRK12364 317 FIDTVPDSLDGIYRSIDNFAQVSKFGGGMGLYFGKVRAVGSNIRGFQGVAGGVIRWIKLANDTAVAVDQLGMRQGAVAVY 396 (842)
T ss_pred EeCCCCccHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCcccCcCCCCCChHHHHHHHHHHHHHHHhCCcCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcC--CceEEECCCCCC-----ccchhhchHHHHHHHH
Q psy8865 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK--STWTLFSPYDVP-----DLHNKFGKEFEESYIL 309 (749)
Q Consensus 237 l~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d--~~W~Lf~P~~~p-----~L~d~yg~~Fe~~Y~~ 309 (749)
|++|||||++||++|+|+|++++|++|+|+||||||+||+||++| ++|+||+|+++| +|.++||++|+++|.+
T Consensus 397 L~~wH~DI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~~~w~Lf~P~~~~~~~g~~l~~~yg~~f~~~Y~~ 476 (842)
T PRK12364 397 LDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDINQSWYLFCPHEILTVKGYALEDYYGEEWEKRYLD 476 (842)
T ss_pred EeCCCccHHHHHHHhccCCchhhhhhhcchhheeCHHHHHHHHhCCCCceEeecccccccccccchhhhcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 899999999999 8999999999999999
Q ss_pred HHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCC-----------
Q psy8865 310 YENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTS----------- 378 (749)
Q Consensus 310 ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~----------- 378 (749)
||+. +.+ .+++|+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+||++
T Consensus 477 ~~~~---~~~-~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~g~I~~SNlC~EI~q~~~p~~~~~~~~~~ 552 (842)
T PRK12364 477 CVND---ARI-SKRSIPIKDLVRLILKSAVETGTPFTFNRDTVNRANPNKHKGMIYCSNLCTEIAQNMSAIETVSTEIET 552 (842)
T ss_pred HHhc---ccc-eeEEEEHHHHHHHHHHHHHHhCCCeeEehHHHhhcCCCCcCCeeEEecCcccccccCCccccccccccc
Confidence 9874 333 4799999999999999999999999999999999999999999999999999998854
Q ss_pred ------------CCcccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccc
Q psy8865 379 ------------KNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIM 446 (749)
Q Consensus 379 ------------~~e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~ 446 (749)
++++++||||||||++|+ .||+++|+++|+++|||||||||+|.||+|+++++|+++|+||||+|
T Consensus 553 ~d~~~~~~~~~~~~~~~~CNL~SinL~~~~---~~d~~~l~~~v~~~vr~LDnVID~~~yp~~~~~~~n~~~R~IGLGvm 629 (842)
T PRK12364 553 EDGDTVVVTTTRPGDFVVCNLASLSLGNID---LEDEEELEEVVRTVVRALDNVIDLNFYPVPYAQITNKRYRSIGLGVS 629 (842)
T ss_pred cccccccccccCCCCeeEEEcHHHHhhccc---cccHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhccccccchH
Confidence 247899999999999985 38999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccC
Q psy8865 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526 (749)
Q Consensus 447 Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~ 526 (749)
||||+|+++||||+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|++ ++.+ + +
T Consensus 630 Glad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~S~~~~g~~-~~~~-------~--~---- 695 (842)
T PRK12364 630 GYHHALAKNGIRWESEEHLEFADRVFERINYAAIKASMEIAKEKGAYGYFEGSDWQTGAY-FRKR-------G--Y---- 695 (842)
T ss_pred HHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhcc-------C--c----
Confidence 999999999999999999999999999999999999999999999999999999999987 3332 1 1
Q ss_pred chhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHH
Q psy8865 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606 (749)
Q Consensus 527 ~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~ 606 (749)
...+|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|...
T Consensus 696 --~~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~gieP~~~~~~~~~~~------------------------ 749 (842)
T PRK12364 696 --TSEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDPVMKRYFLEEKK------------------------ 749 (842)
T ss_pred --chhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCCccCcchHhHHHHhhc------------------------
Confidence 145899999999999999999999999999999999999999999998877521
Q ss_pred HHhhhhhcCCCc--ccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcC
Q psy8865 607 MIANLKYFDGNL--SQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRG 683 (749)
Q Consensus 607 ~~~~i~~~~Gsv--q~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~G 683 (749)
|++ +.++.+|++.+.+|+|||||+|+|+|+|+|+||||||||||+|||+++ ++.++|.++|++||++|
T Consensus 750 ---------~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDqsiS~nl~~~~~~t~~~l~~~y~~Awk~G 820 (842)
T PRK12364 750 ---------GALMPRVAPELSDKTFWLYKNAHLIDQKWSIRAAGVRQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEG 820 (842)
T ss_pred ---------CCcccccCccCCHHHHHHhccHhcCCHHHHHHHHHHHhccchhhccCceecCCCCCHHHHHHHHHHHHHcC
Confidence 111 225778999999999999999999999999999999999999999986 69999999999999999
Q ss_pred CcEEEEeCCCcc
Q psy8865 684 LKTTYYLRSISA 695 (749)
Q Consensus 684 lKt~YY~rs~~~ 695 (749)
|||+||+|+++.
T Consensus 821 lKt~yy~R~~~~ 832 (842)
T PRK12364 821 VKTIYYVRSKSL 832 (842)
T ss_pred CCEEEEEccCCc
Confidence 999999999765
No 12
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.5e-165 Score=1437.27 Aligned_cols=633 Identities=27% Similarity=0.438 Sum_probs=563.0
Q ss_pred CchHHHHHHHHHHHHHH-HHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH-hcHHHHHhhcccccc---CCCC
Q psy8865 5 PVYSQVTARLLMYCIQK-EVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE-FNLSLLSNALLPERD---LQFN 79 (749)
Q Consensus 5 p~y~~~Aarl~~~~l~k-~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~-~~~~~l~~~i~~~rD---~~f~ 79 (749)
-+..++|+|+++..++| ++.. |. .|.+.++..++.|+|++++.+ |+.++|++++++.|| ..|+
T Consensus 26 ~~~d~~A~~~~~~~~~~~~~~~-----------~~-~~~~~~~~lv~~~~y~~~~~~~y~~~~l~~~~~~~~~~~~~~~~ 93 (721)
T PRK07187 26 FDSDKEAVERYLEEHVEPNQKK-----------FN-SLEEKLAYLVNNGYYEQEILDAYSFDQIEELFHYAYQYNHRFLS 93 (721)
T ss_pred ccchHHHHHHHHHHHhhhcccc-----------cc-CHHHHHHHHHHcChhhHHHHhhCCHHHHHHHHhHhhhccccccc
Confidence 46789999999999999 4642 11 356778889999999999875 766666665555555 4456
Q ss_pred hhhHHHHHHhccccc-CCe-EeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcc-cccccce
Q psy8865 80 YLGLKILYDRYFLHI-EGI-RIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTI-RSQLSSC 156 (749)
Q Consensus 80 y~g~~~l~~rYllk~-~~~-~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~-~~qlsSC 156 (749)
|+|+++|++||++|+ +|+ .+|+||+++||||++++..+ .+.+++||++|++++|+||||||+|||++ ++|||||
T Consensus 94 y~g~~~l~~rYllk~~~~~~~~E~pq~~~~~~Al~l~~~~---~~~~~~~y~~~~~~~f~paTPtl~NaG~~~~~qlsSC 170 (721)
T PRK07187 94 FMGAMKFYNSYALKTFDGKQYLETFEDRAVMNALFLADGD---FTKAFDLLDQILLGRFQPATPTFLNAGKKRRGEYISC 170 (721)
T ss_pred hHHHHHHHHhhccccCCCCeeeeCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhCCcccCCcccccCCCCCCCCcCce
Confidence 799999999999997 455 48999999999999999753 35799999999999999999999999998 6999999
Q ss_pred eeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEe
Q psy8865 157 YLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236 (749)
Q Consensus 157 fl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~y 236 (749)
||++|+|||+||+++++++|+|||.|||||+|+|+|||+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|+|
T Consensus 171 Fl~~v~Dsl~sI~~~~~~~a~isK~GGGiG~~~s~lR~~Gs~I~g~~g~ssGvvp~mk~~~~~~~~v~QgG~RrGA~~vy 250 (721)
T PRK07187 171 YLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIIPVMKLLEDSFSYANQLGQRQGAGAVY 250 (721)
T ss_pred EeccCCCCHHHHHHHHHHHHHHHhhCCeeeeeccccCCCCCcccCCCCCCCChHhHHHHHHHHHHHHHcCCcccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHH--HHHHHHhh
Q psy8865 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEES--YILYENQT 314 (749)
Q Consensus 237 l~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~--Y~~ye~~~ 314 (749)
|++|||||++||++|+++|+++.|++++|+||||||+|||+|++|++|+||+|+++ .++||++|+.. .++|++..
T Consensus 251 L~~wHpDI~eFL~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~yg~~~~~~~~~~~Y~~~~ 327 (721)
T PRK07187 251 LHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMALFSPYDI---KREYGKPMSDISITEEYYNLL 327 (721)
T ss_pred EeCCCccHHHHHHHhccccchhhhhccchHHhcccHHHHHHHHcCCCeEeECcchh---hHhhCcchhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999985 68999987753 34455555
Q ss_pred hcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCC------------cc
Q psy8865 315 KLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKN------------EI 382 (749)
Q Consensus 315 ~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~------------e~ 382 (749)
+++.+ .+++|+||+||++|++++||||+|||+|+|+||++||++|.|+|++||||+||+|++++. ++
T Consensus 328 ~~~~i-~k~~V~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~ 406 (721)
T PRK07187 328 ANPAI-KKTYISARKLFQTIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFNEDLSFKKIGED 406 (721)
T ss_pred hcccc-ceeEecHHHHHHHHHHHHHHHCCCeEEEhHHHhhcCCcccCCceeeccccccccccCCchhcccccccccCCCc
Confidence 55555 367899999999999999999999999999999999999999999999999999988764 36
Q ss_pred cccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCC-cHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCC
Q psy8865 383 GVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSS 461 (749)
Q Consensus 383 avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~y-p~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S 461 (749)
++||||||||++||.+ .+.|+++|++||||||||||++.+ |+|+++++|+++|+||||+|||||+|+++||||+|
T Consensus 407 ~~CNLgSiNL~~~v~~----~~~~~~~v~~avR~LDnVId~~d~~~~p~~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S 482 (721)
T PRK07187 407 ICCNLGSLNIAKAMES----GPEFEQLIYTSIRALDRVSRVSDLSCAPSIEKGNAANHAVGLGAMNLHGFLATNHIYYDS 482 (721)
T ss_pred ceeeCHHHHHHHHhcc----hhhHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhcCcccchHHHHHHHHHHCCCCcCC
Confidence 8999999999999863 367889999999999999999754 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHH---------------HHHHHhcccccccC
Q psy8865 462 KEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLK---------------LLEKERGSKYLKVN 526 (749)
Q Consensus 462 ~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~---------------~~~~~r~~~~~~~~ 526 (749)
+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.++ +.+. .+.+.++ +.
T Consensus 483 ~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 556 (721)
T PRK07187 483 KEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSYF-DKYTKEDAKKWTPKTAKVKELLQKYG-----VT 556 (721)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccchh-hhhhhccccccCcchhhhhhhhhhcc-----cc
Confidence 9999999999999999999999999999999999999999999873 3221 1111111 12
Q ss_pred chhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHH
Q psy8865 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDES 606 (749)
Q Consensus 527 ~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~ 606 (749)
.+..++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|+...+....++
T Consensus 557 ~~~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~~~~R~~~~~~~~~~~---------------- 620 (721)
T PRK07187 557 IPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGKLGRIYVP---------------- 620 (721)
T ss_pred ccchhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhhhheeeccCCceEEcc----------------
Confidence 2346899999999999999999999999999999999999999999999999986543322221
Q ss_pred HHhhhhhcCCCcccccCCChhHHhhc-ccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCC
Q psy8865 607 MIANLKYFDGNLSQISRIPDDLRKIY-ATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGL 684 (749)
Q Consensus 607 ~~~~i~~~~Gsvq~i~~ip~~~k~~y-~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~Gl 684 (749)
.+.+|++.+.+| +|||||+|+|+|+|+|+||||||||||+|||+++ ++.++|.++|++||++||
T Consensus 621 --------------~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~IDqsiS~tl~~~~~~t~~dl~~~y~~Awk~Gl 686 (721)
T PRK07187 621 --------------AYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHVDQAISLTLFMTDQATTRDLNKAYIQAFKQKC 686 (721)
T ss_pred --------------cccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhccccccceeeCCCCCCHHHHHHHHHHHHHcCC
Confidence 234677788899 9999999999999999999999999999999985 699999999999999999
Q ss_pred cEEEEeCCCccc
Q psy8865 685 KTTYYLRSISAN 696 (749)
Q Consensus 685 Kt~YY~rs~~~~ 696 (749)
||+||+||+++.
T Consensus 687 Kt~YY~Rt~~~~ 698 (721)
T PRK07187 687 ASIYYVRVRQDV 698 (721)
T ss_pred CEEEEEeehhhh
Confidence 999999997765
No 13
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=6.2e-164 Score=1419.82 Aligned_cols=609 Identities=27% Similarity=0.422 Sum_probs=553.9
Q ss_pred hHHHHHHhhccccccchHHHHhcHHHHHhhccccccCCC---ChhhHHHHHHhcccccCC--eEeecHHHHHHHHHhHhh
Q psy8865 40 YFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQF---NYLGLKILYDRYFLHIEG--IRIEMPQFFFMRIAMGLS 114 (749)
Q Consensus 40 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~f---~y~g~~~l~~rYllk~~~--~~~E~pq~~~mRVA~~la 114 (749)
.|.+.++..++.++|++.+..|+.++|++++++.||..| +|+|+++|+++|++|.++ ..+|+||++|||||++||
T Consensus 50 ~~~~~~~~l~~~~~y~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~Y~lk~~~~~~~~E~~q~~~~~vAl~l~ 129 (699)
T PRK07632 50 TEIERLRYLVDNDFYFNVFDIYSEEDLIEVTDYAYSIKFNFASYMSASKFYKDYALKTNDKKQYLEDYEDHVAIVALYLA 129 (699)
T ss_pred CHHHHHHHHHhccHHHHHHHhCCHHHHHHHHhHHhhccccccchhHHHHHHhhhccccCCCCeEEeCHHHHHHHHHHHHc
Confidence 467788899999999999855888888888888877666 588999999999999743 468999999999999999
Q ss_pred ccccCcHHHHHHHHHHHhcCCccccCccccccCcc-cccccceeeccCCCChhhHHHHHHHHHHHHhhcCCccccccccc
Q psy8865 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTI-RSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVR 193 (749)
Q Consensus 115 ~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR 193 (749)
..+ .+++++||++||+++|+||||||+|||++ ++|||||||+.|+|||+||+++++++|+|||.|||||+|+|+||
T Consensus 130 ~~~---~~~a~~~y~~ls~~~f~paTPtl~NaG~~~~~qlsSCFl~~v~Dsl~sI~~~~~~~a~lsK~GGGvG~~~s~lR 206 (699)
T PRK07632 130 NGD---KAKAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 206 (699)
T ss_pred CCC---HHHHHHHHHHHHcCCeecCCCcccCCCCCCCCCeeeEEeCCCCCCHHHHHHHHHHHHHHHhcCCeEEecccccC
Confidence 765 46899999999999999999999999997 69999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHH
Q psy8865 194 SLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDL 273 (749)
Q Consensus 194 ~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~ 273 (749)
|+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|+||++|||||++||++|+++|+++.|++++|+||||||+
T Consensus 207 ~~Gs~I~g~~g~ssGvvp~mk~~d~~~~~v~QgG~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~r~~~l~~~v~ipD~ 286 (699)
T PRK07632 207 ARGEAIKGIKGAAKGVLPVAKLLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSK 286 (699)
T ss_pred CCCCcccCCCCCCCCHHHHHHHHHHHHHHHHhcCccccceeEEEeCCCccHHHHHHHhccccchhhHHHhcchhheecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEECCCCCCccchhhch-----HHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEe
Q psy8865 274 FMKRVIKKSTWTLFSPYDVPDLHNKFGK-----EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348 (749)
Q Consensus 274 Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~-----~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f 348 (749)
|||+|++|++|+||+|+++ .+.||+ +|++.|++|++. +++ .+++|+||+||++|++++||||+|||+|
T Consensus 287 Fme~v~~d~~w~Lf~P~~~---~~~yG~~~~~~~~~~~Y~~~~~~---~~i-~~~~I~AreL~~~I~~~~~etG~Pyi~f 359 (699)
T PRK07632 287 FFELAKEGKDFYMFAPHTV---YKEYGVTLDDIDLEEMYDDLVAN---PNV-KKKKKNAREMLNKIAQTQLQSGYPYLMF 359 (699)
T ss_pred HHHHHHcCCCeEEECCccc---hhhcCcccccchHHHHHHHHHhc---CCe-eecccCHHHHHHHHHHHHHHhCCCeEEe
Confidence 9999999999999999987 567776 688888888764 444 3789999999999999999999999999
Q ss_pred cchhhhhCCCCccceEeeeccccccccCCC---------CCcc---cccccccccchhhhccCCCChHHHHHHHHHHHHH
Q psy8865 349 KDACNIRSPQQHVGIIHSSNLCTEITLNTS---------KNEI---GVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416 (749)
Q Consensus 349 ~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~---------~~e~---avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~ 416 (749)
+|+||+++|++|.|+|++||||+||+|++. .+++ ++||||||||++|++ .+.|+++|++|||+
T Consensus 360 ~D~~N~~np~~~~G~I~~SNlC~EI~~~~~~s~~~~~~~~~~~g~~~~CNLgSiNL~~~v~-----~~~l~~~v~~avr~ 434 (699)
T PRK07632 360 KDNANKVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVME-----SKKFRDSVHSGMDA 434 (699)
T ss_pred HHHHhhcCCCCCCCcEEecCCcccccccCCccccccccccccccccceeecchhhHHHhcc-----cchHHHHHHHHHHH
Confidence 999999999999999999999999998752 2334 499999999999985 35899999999999
Q ss_pred HHHHhhccCCc-HHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Q psy8865 417 LDNVIDINYYA-VKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG-RYS 494 (749)
Q Consensus 417 LD~vId~~~yp-~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G-~~~ 494 (749)
||||||++.|| +|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+| +||
T Consensus 435 LdnViD~~~~p~~p~~~~~n~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~ 514 (699)
T PRK07632 435 LTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQ 514 (699)
T ss_pred HHHHHHhhcCCCCHHHHHHhhccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999887 9999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCcccCCCCchhhHHH------HHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCcccccccccccc
Q psy8865 495 SYDGSLWDQGILPQDSLKL------LEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSAS 568 (749)
Q Consensus 495 ~f~~S~~~~G~lp~d~~~~------~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~g 568 (749)
.|++|+|++|++ ++.|.. ..+.+. .+..+..+..+||++||++|++||+|||+++|||||||||+|+|+|+|
T Consensus 515 ~f~~S~~~~G~~-f~~~~~~~~~~~~~~v~~-~~~~~~~~~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~s 592 (699)
T PRK07632 515 DFEKSDYANGKY-FEKYTTQDFEPKFEKVRE-LFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSS 592 (699)
T ss_pred ccCcChhhccch-Hhhhhhcccchhhhhhhh-hhcccCCCchhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCcc
Confidence 999999999997 565421 111111 111223345789999999999999999999999999999999999999
Q ss_pred ccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHH
Q psy8865 569 IEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648 (749)
Q Consensus 569 ieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a 648 (749)
|||++++++.|.... ++++++++.||++.+.+|+|||||+|+++|+|+|
T Consensus 593 iePi~s~i~~r~~~~-------------------------------~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A 641 (699)
T PRK07632 593 VMPIVDQIERRTYGN-------------------------------AETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIA 641 (699)
T ss_pred HHHHHHHHHhhhcCC-------------------------------CCceeeCccCCHHHHHHhccHhhCCHHHHHHHHH
Confidence 999999988764311 3456778999999999999999999999999999
Q ss_pred HHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Q psy8865 649 VRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 649 ~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~ 696 (749)
++|||||||||+|||+++ ++.++|.++|++||++||||+||+||++++
T Consensus 642 ~~Q~~IDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKtiYY~Rt~~~~ 690 (699)
T PRK07632 642 TIQTHIDQGISTILYVNSEISTRELARLYVYAHHKGLKSLYYTRNKLLS 690 (699)
T ss_pred HHcccchhhhcCceecCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccc
Confidence 999999999999999986 599999999999999999999999996653
No 14
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=100.00 E-value=3.2e-160 Score=1389.99 Aligned_cols=607 Identities=46% Similarity=0.771 Sum_probs=578.1
Q ss_pred hhhHHHHHHhccccc--CCeEeecHHHHHHHHHhHhhcccc--CcHHHHHHHHHHHhcCCccccCccccccCcccccccc
Q psy8865 80 YLGLKILYDRYFLHI--EGIRIEMPQFFFMRIAMGLSLNES--NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSS 155 (749)
Q Consensus 80 y~g~~~l~~rYllk~--~~~~~E~pq~~~mRVA~~la~~e~--~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsS 155 (749)
|+|+++|++||++|+ ++..+|+||++|||||++++..|. ++.+++++||++|++++|+||||||+||||+++||||
T Consensus 1 ~~g~~~l~~~Y~lk~~~~~~~~E~p~~~~~rvA~~~a~~e~~~~~~~~~~~fy~~l~~~~~~patp~l~naGt~~~~lss 80 (617)
T TIGR02506 1 YMGLKELYNRYLLRNAATGAIYESPQEAYMRVAMGLASLEPKDTRLADAIRFYDLLSRLKISPATPTLFNAGTPRGQLSS 80 (617)
T ss_pred CchHHHHHHhhceecCCCCCcccCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCcc
Confidence 789999999999986 356799999999999999998874 5678999999999999999999999999999999999
Q ss_pred eeeccC-CCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceE
Q psy8865 156 CYLSTV-PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234 (749)
Q Consensus 156 Cfl~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~ 234 (749)
|||+.+ +||+++|+++++++++++|.|||||+|+|+|||+|++|+|++|.|+|+|||||++|+++.+|+|||+||||+|
T Consensus 81 Cfv~~~~dds~~~I~~~~~~~a~l~k~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~f~~~~d~~~~~v~qgg~Rrga~~ 160 (617)
T TIGR02506 81 CFLLDVTDDTLESIYKAIDDVAQLSKHGGGIGLNLTKLRAIGSPIRGTNNASKGIIPFLKLLDSSVEAVNQGGKRPGAAA 160 (617)
T ss_pred eEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCccCCCCCCCCCceeHHHHHHHHHHHHhcCCccccceE
Confidence 999998 6779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhh
Q psy8865 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQT 314 (749)
Q Consensus 235 ~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~ 314 (749)
+||++|||||++||++|+++|++..|++++|+||||||+|||||++|++|+||+|++++.|+++||++|++.|.+|++..
T Consensus 161 ~~l~~~HpDi~~Fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~d~~w~Lf~p~~~~~l~~~~~~~f~~~Y~~~~~~~ 240 (617)
T TIGR02506 161 VYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFSPYDVPGLYGLYGEEFEEEYERLEKDV 240 (617)
T ss_pred EEEeCCCccHHHHHHhccccCchhhHHHhcchhhccCHHHHHHHHcCCCeEEECccccchhhhcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCC-ccceEeeeccccccccCCCCC---cccccccccc
Q psy8865 315 KLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ-HVGIIHSSNLCTEITLNTSKN---EIGVCNLGSI 390 (749)
Q Consensus 315 ~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~-~~g~I~~SNlC~EI~l~~~~~---e~avCNL~SI 390 (749)
..++ .+++|+||+||++|++++|+||+|||+|+|++|+++|.+ +.|+|++||||+||+|+++++ ++++|||+||
T Consensus 241 ~~~~--~~~~v~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~g~~~~CnL~Si 318 (617)
T TIGR02506 241 EARK--KIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNPFKTGGGAIKMSNLCTEITQPTDDSHKGETAVCNLASV 318 (617)
T ss_pred ccce--eeeEeeHHHHHHHHHHHHHHHcCCceEecchhhhcCCcccCCceEEecCcCccccccCCcccCCceeEEEcHHH
Confidence 5432 345899999999999999999999999999999999987 778999999999999999876 8999999999
Q ss_pred cchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHH
Q psy8865 391 NLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470 (749)
Q Consensus 391 NL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~ 470 (749)
||.+|+.++.||++.|+++|+++||+||+|||.+.||++++++.++++|+||||+|||||+|+++|++|+|+||++|+++
T Consensus 319 NL~~fv~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlG~~Glad~L~~~gi~Y~S~ea~~l~~~ 398 (617)
T TIGR02506 319 NLANFVMEDKFDFSELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIGIGVMGLHDVLAKLGLPYDSEEARDLNDR 398 (617)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCccccchhHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccce
Q psy8865 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNC 550 (749)
Q Consensus 471 i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l 550 (749)
|||.|+|+|++||++||+|+|+||.|++|+|++|+++++.++.....+. .+.. ...+|++||++|++||+|||++
T Consensus 399 i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~~~~~----~~~~-~~~~W~~L~~~i~~~GlRNs~l 473 (617)
T TIGR02506 399 IFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKT----SMAP-TEEDWEALRERIKEYGLRNSQL 473 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhcccchhc----cccc-chhhHHHHHHHHHHhCccccce
Confidence 9999999999999999999999999999999999999998775432221 1122 5789999999999999999999
Q ss_pred eeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHh
Q psy8865 551 VAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRK 630 (749)
Q Consensus 551 ~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~ 630 (749)
+|||||||||+|+|+|+||||+|+++|+|++.+|+|.++|++|+++|+++|+|++++.+++....|++|+++.+|++++.
T Consensus 474 ~aiaPTgs~S~i~g~S~gieP~~a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 553 (617)
T TIGR02506 474 TALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVGSPQPIAAIPETLKY 553 (617)
T ss_pred eccCChHHHHHHcCCCCccCcccchheeEecCCceEEEecHHHHHHHHHcCCCHHHHHHHHHhhCCCccCCCCCChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred hcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCCC
Q psy8865 631 IYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRSI 693 (749)
Q Consensus 631 ~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs~ 693 (749)
+|+|||||+|++||+|+|++|||||||||+|||+++ .+.++|.++|++||++||||+||||++
T Consensus 554 ~f~tA~di~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~~YY~r~~ 617 (617)
T TIGR02506 554 KYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKTMYYCRSR 617 (617)
T ss_pred HhchHhcCCHHHHHHHHHHHhcccccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCEEEEeecC
Confidence 999999999999999999999999999999999986 899999999999999999999999985
No 15
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.5e-158 Score=1372.32 Aligned_cols=606 Identities=29% Similarity=0.473 Sum_probs=554.0
Q ss_pred hHHHHHHhhccccccchHHHH-h---cHHHHHhhccccccCCCChhhHHHHHHhccccc-CCeE-eecHHHHHHHHHhHh
Q psy8865 40 YFSKFINKGIDNKLLNPKLAE-F---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-EGIR-IEMPQFFFMRIAMGL 113 (749)
Q Consensus 40 ~~~~~i~~~~~~~~~~~~~~~-~---~~~~l~~~i~~~rD~~f~y~g~~~l~~rYllk~-~~~~-~E~pq~~~mRVA~~l 113 (749)
.|.+.++..++.++|++++.+ | ++++|.+.|+++||..|+|+|+.+|+++|++|+ +|++ +|+||+++||||++|
T Consensus 58 ~~~~~~~~l~~~~~y~~~~~~~y~~~~i~~l~~~i~~~~~~~~~y~ga~~~~~~Y~lk~~~~~~~~E~~~~r~~~vA~~l 137 (714)
T PRK08188 58 SLQEKLDYLVEEGYYEEEVLDQYSRNFVKTLFDHAYAKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTL 137 (714)
T ss_pred cHHHHHHHHHHccchhHHHHHhcCHHHHHHHHHHhhhccccccCcHhHHHHHHhhceecCCCCEEecCHHHHHHHHHHHH
Confidence 366778889999999998865 4 889999999999999999999999999999997 6654 799999999999999
Q ss_pred hccccCcHHHHHHHHHHHhcCCccccCccccccCcc-cccccceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccc
Q psy8865 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTI-RSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQV 192 (749)
Q Consensus 114 a~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~i 192 (749)
|..+ .+++++||++|++++|+||||||+|||++ ++|||||||+.|+|||+||+++++++++++|.|||||+|+|+|
T Consensus 138 a~~~---~~~a~~~y~~l~~~~f~paTPtl~NaG~~~~g~lsSCFl~~v~DslesI~~~~~~~~~lsK~GGGVG~~ls~l 214 (714)
T PRK08188 138 AQGD---ETLARQLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNL 214 (714)
T ss_pred hcCC---HHHHHHHHHHHHcCCEecCCcceecCCCCCCCcceeEEecCCCCCHHHHHHHHHHHHHHHhhCCeEEEecccc
Confidence 9865 46899999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCH
Q psy8865 193 RSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPD 272 (749)
Q Consensus 193 R~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD 272 (749)
||+|++|+|++|.|||||||||+||+++.+++|||+||||.|+||++|||||++||++|+++||++.|++++|+||||||
T Consensus 215 R~~Gs~Ikg~~g~ssGvvp~mkl~d~~~~~v~Q~G~R~GA~avyL~~~HpDI~~FL~~K~~~gde~~R~~~l~~gV~ipD 294 (714)
T PRK08188 215 REAGAPIKRIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 294 (714)
T ss_pred CCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCchHHHHHHHhhcccchhhhhhhchHHhccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEECCCCCCccchhhchHHHH--HHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecc
Q psy8865 273 LFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEE--SYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350 (749)
Q Consensus 273 ~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~--~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D 350 (749)
+||++|++|++|+||+|+++ .++||++|+. ..++|++++.++++. +++|+||+||++|+++++|||+|||+|+|
T Consensus 295 ~Fme~v~~~~~~~Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~v~~~~i~-k~~I~Arel~~~I~~~~~etG~Pyi~f~D 370 (714)
T PRK08188 295 ITFELAKENEDMYLFSPYDV---ERVYGKPFADISVTEKYDEMVADERIR-KKKINAREFFQTLAEIQFESGYPYIMFED 370 (714)
T ss_pred HHHHHHHcCCCeEeeCcchh---hhhhcccccchhHHHHHHHHHhCCcce-eeEeeHHHHHHHHHHHHHHhCCCeEEeHH
Confidence 99999999999999999976 5789999973 345666666666663 78999999999999999999999999999
Q ss_pred hhhhhCCCCccceEeeeccccccccCCCCC------------cccccccccccchhhhccCCCChHHHHHHHHHHHHHHH
Q psy8865 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKN------------EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLD 418 (749)
Q Consensus 351 ~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~------------e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD 418 (749)
++|+++|++ |+|++||||+||+|+++++ +.++||||||||++|+ |++.|+++|++|||+||
T Consensus 371 ~vNr~np~~--G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~sCNLgSiNL~~~~-----d~~~l~~~v~~avR~LD 443 (714)
T PRK08188 371 TVNRANPIA--GRINMSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGSLNIAHTM-----DSPDFGRTVETAIRALT 443 (714)
T ss_pred HHHhhCCCC--CceeeecccccccccCChhhhccccccccCCCcceEEChhhhHHHhc-----CHHHHHHHHHHHHHHHH
Confidence 999999986 9999999999999987653 4579999999999986 78999999999999999
Q ss_pred HHhhccC-CcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCC
Q psy8865 419 NVIDINY-YAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG-RYSSY 496 (749)
Q Consensus 419 ~vId~~~-yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G-~~~~f 496 (749)
||||++. +|+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||.|+|+|++||++||+|+| +||.|
T Consensus 444 ~ViD~~~~~p~p~~~~~n~~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkErG~~f~~f 523 (714)
T PRK08188 444 AVSDMSHIRSVPSIEKGNAASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFAGF 523 (714)
T ss_pred HHHHhhcCCCCchHHHHHHhcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999986 799999999999999999999999999999999999999999999999999999999999999999 59999
Q ss_pred CCCcccCCCCchhhH-----H-------HHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCcccccccc
Q psy8865 497 DGSLWDQGILPQDSL-----K-------LLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIG 564 (749)
Q Consensus 497 ~~S~~~~G~lp~d~~-----~-------~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g 564 (749)
++|+|++|.++ +.+ . .+.... .+..+...+|++|+++|++||+|||+++|||||||||+|+|
T Consensus 524 ~~S~~~~G~~f-~~y~~~~~~~~~~~v~~~~~~~-----~~~~p~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i~~ 597 (714)
T PRK08188 524 EQSKYASGEYF-DKYTQQDWQPKTAKVRELFARA-----GITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYINH 597 (714)
T ss_pred ccChhhccchh-hhcchhccCcchhhhhhhhhhc-----ccCCCcHHhHHHHHHHHHHhCcccceeeeeCCcchHHHHcC
Confidence 99999999884 221 1 011111 11223567899999999999999999999999999999999
Q ss_pred ccccccccccchhheecC-CCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHH
Q psy8865 565 VSASIEPTYRNLHIKSNL-SGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643 (749)
Q Consensus 565 ~s~gieP~~~~~y~r~~~-~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~ 643 (749)
+|+||||+++++|+|+.. .|++..++|+| +++.+++|+|||||+|+++
T Consensus 598 ~T~sIePi~s~v~~R~~~~~g~~~~~~p~l-------------------------------~~~~~~~y~tA~ei~~~~~ 646 (714)
T PRK08188 598 STSSIHPIVSKIEIRKEGKIGRVYYPAPYM-------------------------------TNDNLEYYQDAYEIGPEKI 646 (714)
T ss_pred CCCCcCcchhhheeeeccccceEEeeCccc-------------------------------chhhHhHhCcHHhCCHHHH
Confidence 999999999999999853 47777666653 4456779999999999999
Q ss_pred HHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Q psy8865 644 IEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 644 i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~ 696 (749)
|+|+|++|||||||||+|||+++ .+.++|.++|++||++||||+||+|+++.+
T Consensus 647 I~~~A~~Qk~VDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKtiYY~R~~~~~ 700 (714)
T PRK08188 647 IDTYAAATQHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 700 (714)
T ss_pred HHHHHHHcccchhhhcCceecCCCCCHHHHHHHHHHHHHcCCCeEEEEeecccc
Confidence 99999999999999999999985 589999999999999999999999997664
No 16
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.5e-157 Score=1372.15 Aligned_cols=608 Identities=27% Similarity=0.447 Sum_probs=546.9
Q ss_pred hHHHHHHhhccccccchHHHH-h---cHHHHHhhccccccCCC-ChhhHHHHHHhccccc-CCeE-eecHHHHHHHHHhH
Q psy8865 40 YFSKFINKGIDNKLLNPKLAE-F---NLSLLSNALLPERDLQF-NYLGLKILYDRYFLHI-EGIR-IEMPQFFFMRIAMG 112 (749)
Q Consensus 40 ~~~~~i~~~~~~~~~~~~~~~-~---~~~~l~~~i~~~rD~~f-~y~g~~~l~~rYllk~-~~~~-~E~pq~~~mRVA~~ 112 (749)
.|.+.++..++.|+|++++.+ | ++++|.+.|++ ||+.| +|+|+++|++||++|+ +|+. +|+||+++|++|++
T Consensus 52 ~~~~~~~~l~~~~~y~~~~~~~y~~~~i~~l~~~i~~-~~~~f~~~~ga~~~~~rY~lk~~~g~~~~E~~~~Rv~~~A~~ 130 (720)
T PRK07306 52 SIKEKINYLIENDYIESAFIKKYRPEFIEKLYQFLKA-QNFRFKSFMAAYKFYNQYALKTNDGEYYLENFEDRVLFNALY 130 (720)
T ss_pred CHHHHHHHHHhcChhHHHHHhhCCHHHHHHHHHHHhh-ccCcCcCHHHHHHHHHHhCccCCCCCEeccCHHHHHHHHHHH
Confidence 467788889999999998865 4 88999999997 88888 9999999999999997 5655 79999999999999
Q ss_pred hhccccCcHHHHHHHHHHHhcCCccccCccccccCcc-cccccceeeccCCCChhhHHHHHHHHHHHHhhcCCccccccc
Q psy8865 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTI-RSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQ 191 (749)
Q Consensus 113 la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~ 191 (749)
++..+ .+++++||++|++++|+||||||+|||++ ++|||||||+.|+|||+||+++++++++++|.|||||+|||+
T Consensus 131 la~~~---~~~a~~~y~~ls~~~f~paTPtl~NaG~~~~~~lsSCFl~~v~Dsl~sI~~~~~~~a~lsk~GGGvG~~~s~ 207 (720)
T PRK07306 131 FADGD---EDLAKDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGINLSN 207 (720)
T ss_pred HccCC---HHHHHHHHHHHHhCCeecCCCCeecCCCCCCCCeeeEEeCCCCCChHHHHHHHHHHHHHHhcCCeeEecccc
Confidence 99754 47999999999999999999999999997 599999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccC
Q psy8865 192 VRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVP 271 (749)
Q Consensus 192 iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ip 271 (749)
|||+|++|+|++|.|+|||||||+||+++.+|+|||+||||+|+||++|||||++||++|+++|+++.|++++|+|||||
T Consensus 208 lR~~Gs~I~g~~g~ssGvvp~mk~~d~~~~~v~QgG~RrGA~~vyL~~wHpDI~~FL~~K~~~gde~~R~~nl~~~v~vp 287 (720)
T PRK07306 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVP 287 (720)
T ss_pred cCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHhcCCCcCcceEEEEeCCCccHHHHHHHhcccccchhhhcccchhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEECCCCCCccchhhchHHHH--HHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEec
Q psy8865 272 DLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEE--SYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFK 349 (749)
Q Consensus 272 D~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~--~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~ 349 (749)
|+|||+|++|++|+||+|+++ .++||++|+. .+++|++.++++++ .+++|+||+||++|++++|+||+|||+|+
T Consensus 288 D~Fm~~v~~~~~w~Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~~~~~~i-~~~~i~AreL~~~I~~~~~etG~Pyi~f~ 363 (720)
T PRK07306 288 DKFYELARKNEDMYLFSPYSV---EKEYGVPFNYVDITKEYDELVANPNI-RKTKIKARDLETEISKLQQESGYPYIINI 363 (720)
T ss_pred HHHHHHHHcCCCeEEeCcchh---hhhcCccccchhHHHHHHHHhhcccc-eeeEeeHHHHHHHHHHHHHHhCCCeEEeH
Confidence 999999999999999999876 4799999952 35556666666765 37899999999999999999999999999
Q ss_pred chhhhhCCCCccceEeeeccccccccCCCCC------------cccccccccccchhhhccCCCChHHHHHHHHHHHHHH
Q psy8865 350 DACNIRSPQQHVGIIHSSNLCTEITLNTSKN------------EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRML 417 (749)
Q Consensus 350 D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~------------e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~L 417 (749)
|++|+++|+ .|+|++||||+||+|+.++. +.++||||||||++|+++ ..|+++|++|||||
T Consensus 364 D~iNr~np~--~g~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSINL~~~v~~-----~~~~~~v~~avR~L 436 (720)
T PRK07306 364 DTANRANPI--DGKIIMSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNMMTS-----PDFGRSIETMVRAL 436 (720)
T ss_pred HHHHhhCCC--CCceeecccccccccCCCchhhccccccccCCCccEEECHHHHHHHHhcc-----ccHHHHHHHHHHHH
Confidence 999999998 49999999999999887763 347999999999999863 36889999999999
Q ss_pred HHHhhccC-CcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Q psy8865 418 DNVIDINY-YAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG-RYSS 495 (749)
Q Consensus 418 D~vId~~~-yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G-~~~~ 495 (749)
|||||++. ||+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||.|+|+|++||++||+|+| +||.
T Consensus 437 DnViD~~~~~p~p~~~~~n~~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~ErG~~fp~ 516 (720)
T PRK07306 437 TFVTDSSNIDAVPSIKHGNSQAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARERGETFHN 516 (720)
T ss_pred HHHHHhhCCCCChHHHHHHHhcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999975 799999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred CCCCcccCCCCchhhHHHHH------HHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccc
Q psy8865 496 YDGSLWDQGILPQDSLKLLE------KERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASI 569 (749)
Q Consensus 496 f~~S~~~~G~lp~d~~~~~~------~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gi 569 (749)
|++|+|++|++ +|.|.... +.+. .+-.+..+...+|++||++|++||+|||+++|||||||||+|+|||+||
T Consensus 517 f~~S~~~~G~~-f~~~~~~~~~~~~~~v~~-~~~~~~~p~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~g~S~gI 594 (720)
T PRK07306 517 FEKSKYADGSY-FDKYVTGDFVPKSDKVKE-LFKGIFIPTAADWAALRDAVMKDGLYHQNRLAVAPNGSISYINDTSASI 594 (720)
T ss_pred cCcChhhccch-hhhhhhcccCcchhhHHH-hhhccCCCchhhHHHHHHHHHHhCcccccceeeCCccHHHHHhCCCCcc
Confidence 99999999998 45542100 0000 0001122346789999999999999999999999999999999999999
Q ss_pred cccccchhheec-CCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHH
Q psy8865 570 EPTYRNLHIKSN-LSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGS 648 (749)
Q Consensus 570 eP~~~~~y~r~~-~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a 648 (749)
||+|+++|+|.. ..|++.. +.+.||++.+.+|+|||||+|+|+|+|+|
T Consensus 595 ePi~s~v~~r~~~~~g~~~~-------------------------------~~p~l~~~~~~~f~tA~ei~~~~~I~~~A 643 (720)
T PRK07306 595 HPITQRIEERQEKKIGKIYY-------------------------------PAPGLSTETIPYYTSAYDMDMRKVIDVYA 643 (720)
T ss_pred ccchhhHhhhhhhcCCceec-------------------------------cCCCCchhHHHHhCcHHhCCHHHHHHHHH
Confidence 999999998863 2243322 23567888899999999999999999999
Q ss_pred HHcccccccCcceeeeCCC---------------CHHHHHHHHHHHHHcCCcEEEEeCCCcc
Q psy8865 649 VRQKWIDQSQSLNIYISNK---------------SGKKLDETYKLAWLRGLKTTYYLRSISA 695 (749)
Q Consensus 649 ~~Q~~iDqs~S~nl~~~~~---------------~~~~l~~~~~~Awk~GlKt~YY~rs~~~ 695 (749)
++|||||||||+|||++++ +.++|.++|++|||+||||+||+||.+.
T Consensus 644 ~~Qk~VDQsiS~tl~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt~YY~Rt~~~ 705 (720)
T PRK07306 644 AATEHVDQGLSLTLFMRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKSIYYIRTFTD 705 (720)
T ss_pred HHhccchhhhcCccccCCccccccccccccccCCCHHHHHHHHHHHHHcCCCeEEEEeeccc
Confidence 9999999999999999753 6899999999999999999999998765
No 17
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.3e-152 Score=1308.33 Aligned_cols=553 Identities=38% Similarity=0.604 Sum_probs=528.5
Q ss_pred HhhccccccCCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCcccccc
Q psy8865 67 SNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNS 146 (749)
Q Consensus 67 ~~~i~~~rD~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~na 146 (749)
+.+|+++||..|+|+|+++|.+||++++ |+||++|||||+++|.. ..+++++||++|++++|+||||||+|+
T Consensus 10 ~~~i~~~rd~~~~~~~~~~l~~rYl~~~-----Es~~~~~~RvA~~la~~---~~~~~~~fy~~Ls~~~~~patP~l~na 81 (601)
T PRK09102 10 QINIDRSRDAWLTEFGKATLRDRYLLEG-----ESYQDLFARIAEAYADI---DPEHAQRFYDYMSRGWFMPATPVLSNG 81 (601)
T ss_pred cceecchhhcccCHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCEEcCCHHHhcC
Confidence 5579999999999999999999999984 89999999999999975 257899999999999999999999999
Q ss_pred CcccccccceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcC
Q psy8865 147 GTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQG 226 (749)
Q Consensus 147 Gt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~Qg 226 (749)
|+.++|+|||||+.|+||+++|+++++++|+++|.|||||+|+|+|||+|++|+|+ |+|+|+|||||+||+++.+|+||
T Consensus 82 G~~~~~lssCfl~~v~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~~~-g~ssG~v~f~k~~d~~~~~i~qg 160 (601)
T PRK09102 82 GTDRGLPISCFLNYVEDSLEGIVNTWNENVWLAKRGGGIGSYWGNVRSIGEPIRNN-GKSSGIIPFIKVMDSLTLAISQG 160 (601)
T ss_pred CCCCCCeeeEEeCCCCCCHHHHHHHHHHHHHHHhhCCeeeecccccCCCCCccCCC-CCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999986 99999999999999999999999
Q ss_pred CCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHH
Q psy8865 227 GKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEES 306 (749)
Q Consensus 227 G~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~ 306 (749)
|+||||+|+||++|||||++||++|+++|++.+|++++|+||||||+|||+|++|++|+||+|++
T Consensus 161 g~RrGA~~~~L~~~HpDI~~Fi~~K~~~g~~~~r~~n~n~sv~i~D~FM~~v~~d~~w~L~~p~~--------------- 225 (601)
T PRK09102 161 SLRRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLISPKD--------------- 225 (601)
T ss_pred CccccceEEEEeCCCcCHHHHHHHhhccCcccccccCCeeEEEECHHHHHHHHcCCCeEEEcCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCcc--c-eEeeeccccccccCC-----C
Q psy8865 307 YILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV--G-IIHSSNLCTEITLNT-----S 378 (749)
Q Consensus 307 Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~--g-~I~~SNlC~EI~l~~-----~ 378 (749)
| +++++|+||+||++|++++|+||+|||+|+|++|+++|+.+. | +|++||||+||+|++ +
T Consensus 226 ----------~--~~~~~i~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~p~~~~~~G~~I~~sNpC~Ei~l~~~~~~~~ 293 (601)
T PRK09102 226 ----------K--SVIRTVKARDLWAKILETRIETGEPYLLFIDNVNRALPEVYKDLGLKVKASNLCSEITLPTGIDHLG 293 (601)
T ss_pred ----------C--eEEEEecHHHHHHHHHHHHHHhCCCeEEEHHHhhhhCcccccccCCeEEeeCcccceecccccccCC
Confidence 2 247999999999999999999999999999999999988654 5 899999999999999 7
Q ss_pred CCcccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhh--ccCCc--HHHHHHHhhhcCCcccccchHHHHHHH
Q psy8865 379 KNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVID--INYYA--VKKAKYSNLRHRPVGLGIMGFQDCLHI 454 (749)
Q Consensus 379 ~~e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId--~~~yp--~~~~~~~n~~~R~IGlGv~Glad~L~~ 454 (749)
++++++|||+||||++|+ |++.++++|+++||+|||||| ++.+| +|+++++++++|+||||+|||||+|++
T Consensus 294 ~~~~~~CnL~SINL~~~v-----~~~~~~~~v~~~vr~LDnvid~~i~~~p~~~~~~~~~~~~~R~IGLGvmGlad~L~~ 368 (601)
T PRK09102 294 EDRTAVCCLSSLNLEYYD-----EWKDTDAFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRERSVGLGVMGFHSYLQS 368 (601)
T ss_pred CCceeeeeecceeHHHhc-----chhhHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCccccchhHHHHHHHH
Confidence 888999999999999997 588999999999999999999 55555 999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHH
Q psy8865 455 MKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534 (749)
Q Consensus 455 lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~ 534 (749)
+|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|
T Consensus 369 lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~-------------------------------------- 410 (601)
T PRK09102 369 KMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDA-------------------------------------- 410 (601)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch--------------------------------------
Confidence 999999999999999999999999999999999999998743
Q ss_pred HHHHHHHHhC--CcccceeeccCCccccccc-cccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhh
Q psy8865 535 KLRNRIKKFG--MRNSNCVAIAPTATISNII-GVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANL 611 (749)
Q Consensus 535 ~Lr~~i~~~G--~RNs~l~AiaPT~t~S~i~-g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i 611 (749)
.++| +|||+++|||||||||+|+ |+|+||||+|+++|+|++.+|+|.++||+|.++|+++|+|++++++.+
T Consensus 411 ------~~~G~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~~~~ 484 (601)
T PRK09102 411 ------AGYGVMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVWSSI 484 (601)
T ss_pred ------hhhCchhcccceeeeCCCcHHHHHcCCCCCCcccchhhheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHH
Confidence 2478 9999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEe
Q psy8865 612 KYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYL 690 (749)
Q Consensus 612 ~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~ 690 (749)
....||+|+++.+|++++.+|+|||||+|++||+|||++|||||||||+|||+++ .+.++|.++|++||++||||+||+
T Consensus 485 ~~~~gsvq~~~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~~yy~ 564 (601)
T PRK09102 485 LTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKSLYYQ 564 (601)
T ss_pred HhcCCCcccCccCChhHHhhcCcHhhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999986 589999999999999999999999
Q ss_pred CCCccccccccccc
Q psy8865 691 RSISANYAKKSNFE 704 (749)
Q Consensus 691 rs~~~~~~~~~t~~ 704 (749)
|+.+..+++|+..+
T Consensus 565 R~~~~~~~~~~~~~ 578 (601)
T PRK09102 565 RSKSVQRADKVSHD 578 (601)
T ss_pred cCchhhhhHHhccc
Confidence 99999999988554
No 18
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.8e-150 Score=1311.25 Aligned_cols=558 Identities=35% Similarity=0.580 Sum_probs=528.1
Q ss_pred HHhhccccccCCCChhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc--------------------------
Q psy8865 66 LSNALLPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES-------------------------- 118 (749)
Q Consensus 66 l~~~i~~~rD~~f~y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~-------------------------- 118 (749)
....|+++||+.|++.|+++|.+|||+|+ +|+++|+||+||||||+++|..|.
T Consensus 101 ~k~~~~~~~~~~~~~~a~~vl~~RYl~kd~~g~~~E~p~~~f~rvA~~va~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (771)
T PRK06406 101 EKELIGVKDDLKLTLNAIKVLEARYLLKDEDGKIIETPRQMFRRVARHIAIVEALYDDEVYDKTGKQKENAEVIGKLSVT 180 (771)
T ss_pred cccccCcccccccCHHHHHHHHHHHhccCCCCCEecCHHHHHHHHHHHHcchhhcccchhcccccccccccccccchhhh
Confidence 34688999999999999999999999997 788899999999999999998764
Q ss_pred ----------------------------------CcHHHHHHHHHHHhcCCccccCccccccCcccccccceeeccCCCC
Q psy8865 119 ----------------------------------NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD 164 (749)
Q Consensus 119 ----------------------------------~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl~~v~Ds 164 (749)
+..+++++||++|++++|+|+||||+|||++++||||||++.|+||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fy~~ms~~~f~pasP~l~NaG~~~~qlssCFvl~v~Ds 260 (771)
T PRK06406 181 QEDMLKRAFRYLKEEGIMKGDFEEFLDFLKTKWDSIEEYINKFEEVMSNLKFVPNSPTLMNAGTKLGQLSACFVLPVPDS 260 (771)
T ss_pred hhhhhhhhhhhhhhhccccccchhhhhhhccchhhHHHHHHHHHHHHHcCCEecCCHHHhcCCCCCCCeeeEEeCCCCCC
Confidence 1155789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCH
Q psy8865 165 LYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDI 244 (749)
Q Consensus 165 l~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI 244 (749)
|+|||++++++|+|+|.|||||+|||+|||+|++|+|++|+||||||||++||+++.+|+|||+||||.|+||++|||||
T Consensus 261 le~I~~~~~~~a~i~k~GGGvG~~~S~iRp~G~~i~~~~g~ssG~vsfm~~~d~~~~~i~QGG~RrGA~m~~L~~~HpDI 340 (771)
T PRK06406 261 IEGIFNALKYTAMIHKSGGGTGFSFSRLRPKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGGKRRGANMGILSYHHPDI 340 (771)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEeccccCCCCCccCCCCCcCCChhhHHHHHHHHHHHHHcCCccccceEEEecCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEE
Q psy8865 245 EEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKK 324 (749)
Q Consensus 245 ~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~ 324 (749)
++||++|... ..+++++|+||||||+||++|++|++|+|++|++ |+ ++++
T Consensus 341 ~eFI~~K~~~---~~~~~n~n~sV~i~D~FM~~v~~d~~~~L~~P~~-------------------------g~--~~~~ 390 (771)
T PRK06406 341 MEFITSKDSE---NKVLSNFNISVAVTDEFFDKLDNDDYYPLRNPRN-------------------------GK--EVKR 390 (771)
T ss_pred HHHHHhcccc---cchhhcCceeEEeCHHHHHHHHcCCCeEeecCCC-------------------------Cc--eeee
Confidence 9999999643 2457999999999999999999999999999974 33 4789
Q ss_pred EeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhccCCCChH
Q psy8865 325 ISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPI 404 (749)
Q Consensus 325 v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~g~~D~~ 404 (749)
|+||+||++|++++|+||+|||+|+|++|+++|++|.|.|.+||||+||+|++++ +||||||||++||++|.|||+
T Consensus 391 v~AreL~~~I~~~a~~tGePgi~F~D~iNr~n~~~~~G~I~~tNpCgEq~L~p~~----sCnLgSINL~~~v~~~~~D~~ 466 (771)
T PRK06406 391 IKARQVWDLIITQAWKTGDPGVIFLDEINRKNPVKNLGEIESTNPCGEQPLLPYE----SCNLGSINLSKFVENGKIDWD 466 (771)
T ss_pred ecHHHHHHHHHHHHHHHCCCeEEEhHhHHhcCCCccCCceEeeccccccccCCCc----ceechhhhHHHHhcccCCCHH
Confidence 9999999999999999999999999999999999999999999999999998874 899999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy8865 405 KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAST 484 (749)
Q Consensus 405 ~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~ 484 (749)
.|+++|++||||||||||++.||+|+++++++++|+||||+|||||+|+++|+||+|+||++|+++||++|+|+|+++|+
T Consensus 467 ~l~~~v~~avr~LDnvID~~~yPl~~~~~~~~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~ 546 (771)
T PRK06406 467 RLRETVHIATRFLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQ 546 (771)
T ss_pred HHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcCCceechHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCcccccccc
Q psy8865 485 ELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIG 564 (749)
Q Consensus 485 eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g 564 (749)
+||+|+|+||.|++|.|++ ...|+|||+++|||||||||+|+|
T Consensus 547 ~LAkErG~fp~f~~s~~~~-------------------------------------~~~g~RNs~ltaiAPTgSiS~i~g 589 (771)
T PRK06406 547 KLAEERGVFPAWYGSEWEK-------------------------------------KGIKMRNSTTTTIAPTGTISIIAG 589 (771)
T ss_pred HHHHHhCCCCCcCccchhh-------------------------------------cCCcccccceeeeCCcchhhhhcC
Confidence 9999999999999998852 014899999999999999999999
Q ss_pred ccccccccccchhheecCCCc-ceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHH
Q psy8865 565 VSASIEPTYRNLHIKSNLSGE-FTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643 (749)
Q Consensus 565 ~s~gieP~~~~~y~r~~~~G~-f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~ 643 (749)
||+||||+|+++|+|++.+|+ |.++||+|.+.|+++|+|+++++..+. ..|++|++ .+|++++.+|+|||||+|+||
T Consensus 590 ~SsGIEP~fa~~y~R~v~~g~~~~~vn~~l~~~l~~~g~~~~~~~~~i~-~~gs~~~~-~~p~~~~~~f~tA~dI~~~~~ 667 (771)
T PRK06406 590 CSSSIEPLFAIAFVRHVLNGQELLEVNPLFEEITRKRGLYSEELMRKVA-ETGNLQNI-DVPEDIKRIFVTAHEIDPQWH 667 (771)
T ss_pred CCCccCccchhheEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHHH-hCCCcccc-cCChHHHhhcccHHhCCHHHH
Confidence 999999999999999999885 789999999999999999999998875 57999999 799999999999999999999
Q ss_pred HHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Q psy8865 644 IEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 644 i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~ 696 (749)
|+|||++|||||||||+|||+++ ++.++|.++|++||++||||++|+|..+..
T Consensus 668 i~m~A~~Qk~vDqsiSkTinlp~~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~ 721 (771)
T PRK06406 668 VLMQATFQRYCDSGVSKTINLRYDATPEDIAKAYRLAKDLHCKGITVYRDKSKT 721 (771)
T ss_pred HHHHHHHcccccCcccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCCcc
Confidence 99999999999999999999985 799999999999999999997777766654
No 19
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.5e-147 Score=1298.39 Aligned_cols=556 Identities=34% Similarity=0.582 Sum_probs=528.2
Q ss_pred cccccCCCChhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc------CcHHHHHHHHHHHhcCCccccCccc
Q psy8865 71 LPERDLQFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES------NREKCAIKFYNLLSSFNFMCSTPTL 143 (749)
Q Consensus 71 ~~~rD~~f~y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~------~~~~~a~~fY~~ls~~~~~~atPtl 143 (749)
...+|..|+++|+++|.+|||+|+ +|+.+|+||++|||||++||..|. ++..++++||++|++++|+|+||||
T Consensus 5 ~~~~~~~~~~~a~~vl~~rYl~k~~~g~~~Es~~~~~~RVA~~la~~e~~~~~~~~~~~~~~~fy~~m~~~~f~pasP~l 84 (752)
T PRK08665 5 ADLPDMKLTDNALTVLEKRYLKKDEDGKPIETPEDMFRRVARTIAAAELIYDSKADVEALADRFYDLMTSLEFLPNSPTL 84 (752)
T ss_pred cccccCCcCHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHcCCeecCChHH
Confidence 346788999999999999999997 688889999999999999998763 3567899999999999999999999
Q ss_pred cccCcccccccceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHh
Q psy8865 144 FNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAV 223 (749)
Q Consensus 144 ~naGt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v 223 (749)
+|||++++||||||++.|+|||+|||++++++|+++|.|||||+|||+|||+|++|+|++|+||||||||++||+++.+|
T Consensus 85 ~naG~~~~qlssCFv~~v~Dsl~~I~~~~~~~a~i~k~GGGvG~~~S~lRp~G~~v~~~~g~asGpvsfm~~~d~~~~~v 164 (752)
T PRK08665 85 MNAGRELGQLSACFVLPVGDSIEEIFDAVKHAALIHKSGGGTGFSFSRLRPKNDRVGSTGGVASGPVSFMRVFDAATEAI 164 (752)
T ss_pred hcCCCCCCcccceeecCCCCCHHHHHHHHHHHHHHHhcCCeEEEeccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHH
Q psy8865 224 NQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303 (749)
Q Consensus 224 ~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~F 303 (749)
+|||+||||.|+||++|||||++||++|++.|+ ++++|+||||||+||++|++|++|+||+|++
T Consensus 165 ~qgG~RRGA~m~~l~~~HpDI~~FI~~K~~~~~----~~~~n~sV~i~D~Fm~av~~d~~~~L~~p~~------------ 228 (752)
T PRK08665 165 KQGGTRRGANMGILRVDHPDIMEFITCKEDNGE----LTNFNISVAITEAFMEAVEADEEYDLINPRT------------ 228 (752)
T ss_pred HhCCcccceeEEEEcCCCccHHHHHHhcccCCc----cccceeeeccCHHHHHHHHcCCCeEEEcCCC------------
Confidence 999999999999999999999999999998774 7899999999999999999999999999975
Q ss_pred HHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCccc
Q psy8865 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIG 383 (749)
Q Consensus 304 e~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~a 383 (749)
|+ ++++|+||+||++|++++|+||+|||+|+|++|+++|+++.|.|++||||+||+|++++
T Consensus 229 -------------g~--~~~~i~Ar~l~~~I~~~a~~~GePgi~f~D~iN~~n~~~~~g~I~~tNpCgEq~L~p~~---- 289 (752)
T PRK08665 229 -------------GE--VVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIESTNPCGEQPLLPYE---- 289 (752)
T ss_pred -------------ce--eEEEEEHHHHHHHHHHHHHHhCCCeEEEHHHHhhcCCCCcCCcEEEeccccccccCCCC----
Confidence 32 47999999999999999999999999999999999999999999999999999999875
Q ss_pred ccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHH
Q psy8865 384 VCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463 (749)
Q Consensus 384 vCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~e 463 (749)
+|||+||||++||++|.|||++|+++|++||||||||||++.||+|++++.++++|+||||+|||||+|+++||||+|+|
T Consensus 290 ~CnLgSiNL~~~v~~~~~D~~~l~~~v~~avr~LDnvId~~~~Pl~~~~~~~~~~R~IGLGv~Glad~L~~lgi~Y~S~e 369 (752)
T PRK08665 290 SCNLGSINLSKMVKNGDVDWEKLREVVHLAVRFLDNVIDANKYPLPQIEEMTKGNRKIGLGVMGWADMLIQLGIPYDSEE 369 (752)
T ss_pred ceeccceeHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcCccccchhhHHHHHHHcCCCcCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHh
Q psy8865 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543 (749)
Q Consensus 464 a~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~ 543 (749)
|++|+++||+.|+++|+++|++||+|+|+||.|++|+|.+|.+ .
T Consensus 370 a~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~------------------------------------~ 413 (752)
T PRK08665 370 AVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL------------------------------------G 413 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc------------------------------------c
Confidence 9999999999999999999999999999999999999975421 2
Q ss_pred CCcccceeeccCCccccccccccccccccccchhheecCCCc-ceeecHHHHHHHHHcCCChHHHHhhhhhcCCCccccc
Q psy8865 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE-FTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQIS 622 (749)
Q Consensus 544 G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~-f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~ 622 (749)
|+|||+++|||||||||+|+|+|+||||+|+++|+|++.+|+ |.++|++|.+.|+++|+|++++++.+. .+|++|+++
T Consensus 414 ~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~~-~~gs~~~~~ 492 (752)
T PRK08665 414 PMRNATVTTIAPTGTISIIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKIA-EKGSIQDID 492 (752)
T ss_pred cccccceeeeCCccHHHhhcCCCCccCccccceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHHH-hcCCcccCC
Confidence 799999999999999999999999999999999999998887 678999999999999999999888874 689999999
Q ss_pred CCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCCCccccc
Q psy8865 623 RIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRSISANYA 698 (749)
Q Consensus 623 ~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~~~ 698 (749)
.||++++.+|+|||||+|++||+|+|++|||||||||+|||+++ .+.++|.++|++||++|||+++|+|..+...+
T Consensus 493 ~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~~ 569 (752)
T PRK08665 493 EVPEDVRRVFVTAHDISPEWHVRMQAAFQKHTDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDEQ 569 (752)
T ss_pred CCChHHHHhcCcHhhCCHHHHHHHHHHHccccchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCcccc
Confidence 99999999999999999999999999999999999999999985 79999999999999999999888887665433
No 20
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1e-145 Score=1269.99 Aligned_cols=565 Identities=28% Similarity=0.434 Sum_probs=511.6
Q ss_pred eEeec-HHHHHHHHHhHhhcccc---CcHHHHHHHHHHHhcCCccccCccccccCcccc-cccceeeccC-CCChhhHHH
Q psy8865 97 IRIEM-PQFFFMRIAMGLSLNES---NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRS-QLSSCYLSTV-PDDLYGIFE 170 (749)
Q Consensus 97 ~~~E~-pq~~~mRVA~~la~~e~---~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~-qlsSCfl~~v-~Dsl~~I~~ 170 (749)
+.+|. |+++|.|||++||..|. .+.+++++||++|++++|+||||||+|||++++ |||||||+++ +||++||++
T Consensus 125 ~~~e~~~~~~~~RVA~~la~~E~~~~~~~~~~~~fY~~Ls~~~f~PatPtL~NAGt~~~~~lssCFVl~~~~DSlegI~d 204 (858)
T PRK08115 125 KPLEIFYEQIAKRNATGLAAVEKTEEKRKESFEKFYQELVNMNFVPAGRVLYGAGSKTDVTYFNCYVMPFVKDSREGISE 204 (858)
T ss_pred CcccCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHcCCeecCChHhhcCCCCCCCceeeEEecCCCCCCHHHHHH
Confidence 45775 99999999999998874 367899999999999999999999999999988 8999999985 899999999
Q ss_pred HHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHH
Q psy8865 171 SIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIEL 250 (749)
Q Consensus 171 ~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~l 250 (749)
+++++|+|+|+|||||+|||+|||+|++|+|++|+|||+||||++||.++.+|+|||+||||+|+||++|||||++||++
T Consensus 205 ~~ke~a~i~k~GGGvG~nfS~LRp~Gs~I~g~~g~SSG~Vsfm~~fd~~~~~V~QGG~RRGA~mv~L~~wHPDI~eFI~a 284 (858)
T PRK08115 205 HRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIIS 284 (858)
T ss_pred HHHHHHHHHhcCCeEEecccccCCCCCccCCCCCcCCCeecHHHHHHHHHHHHHhCCCcccceEEEecCCcccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred h-----------hhcCccccc-----------------------------------------------------------
Q psy8865 251 R-----------KNTGDDRRR----------------------------------------------------------- 260 (749)
Q Consensus 251 K-----------~~~g~~~~r----------------------------------------------------------- 260 (749)
| +|+|++..|
T Consensus 285 K~~~~~~~~~l~~n~gde~~r~~a~ek~~~~~ls~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~lk~~~~~~~~~~~ 364 (858)
T PRK08115 285 KMQNPRILRYLLENTEDEQIKRLVKEKLKFTPLSEVEEAMYQAIVNYKNIEGQGGFDTKVIKEAENKLRTGGTYTVNNPE 364 (858)
T ss_pred ccccchhhhhhhcccccHhhhhhhhhhhcccccchhhhhhhhhhhcccccccccccchhhhhhhhhhhcccccccccccc
Confidence 7 566776422
Q ss_pred -ccccccccccCHHHHHHHhcCCceEEECCCCCC---ccchhhchHHHHH--HHHHHHhhhcCCceeeEEEeHHHHHHHH
Q psy8865 261 -THDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP---DLHNKFGKEFEES--YILYENQTKLGKIKLFKKISALYLWRKI 334 (749)
Q Consensus 261 -~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p---~L~d~yg~~Fe~~--Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i 334 (749)
+.++|+||||||+||++|++|++|+||+|+... .+.+.||++|++. |.+|+.... .++++++|+||+||++|
T Consensus 365 ~l~n~NiSV~itD~FMeaVe~d~~w~L~~P~~~~~~~~~~~~Y~~~~~~~gd~~~~e~~g~--~~~v~~~I~AReLw~~I 442 (858)
T PRK08115 365 FLTGANISVCLTKEFMEAVENDEEYELRFPDVENYTEEEMEIYNEEWHEVGDVREWEKMGY--PVRTYRKIKAKELWNLI 442 (858)
T ss_pred ccccceeEEEECHHHHHHHHcCCCEEEECCcccccchhhHhhhccccccchhHHHHhhccc--ccceeEEEcHHHHHHHH
Confidence 345899999999999999999999999997642 3566788888776 677776532 34568999999999999
Q ss_pred HHHHHhcCCeEEEecchhhhhCCCCccc-eEeeeccccccccCCCCCcccccccccccchhhhc--cCCCChHHHHHHHH
Q psy8865 335 LSMLFETGHPWITFKDACNIRSPQQHVG-IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK--NGKLDPIKLKKTIR 411 (749)
Q Consensus 335 ~~~~~etG~P~i~f~D~~N~~~p~~~~g-~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~--~g~~D~~~l~~~v~ 411 (749)
++++|+||+|||+|+|++|+++|+++.| .|++||||+||+|+++ ++||||||||++|++ ++.|||++|+++|+
T Consensus 443 ~~~a~etGePgI~F~D~iNr~nn~~~~g~~I~aTNPCgEqpL~p~----~sCNLgSINL~kfV~~~~~~fD~~~L~~~V~ 518 (858)
T PRK08115 443 NICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAPY----SVCNLAAINLANMADKETKTVDYEKLKRTVE 518 (858)
T ss_pred HHHHHHhCCCeEEEHHHhhhcCCccccCCeeeecCccccccCCCC----cccchHHHHHHHHhhccccccCHHHHHHHHH
Confidence 9999999999999999999999999998 8999999999999885 589999999999997 57899999999999
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy8865 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491 (749)
Q Consensus 412 ~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G 491 (749)
+||||||||||++.||+|+++++++++|+||||+|||||+|+++||||+|+||++|+++|||.|+|+|++||++||+|+|
T Consensus 519 ~avRfLDnVID~n~yPl~e~~~~~~~~R~IGLGvmGLAD~L~~lgIpYdSeEA~~l~~~I~e~I~~~A~~AS~eLAkErG 598 (858)
T PRK08115 519 VGVRMQDNVIDATPYFLEENKKQALGERRVGLGVMGLHDLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKG 598 (858)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhhcCCeeechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccc
Q psy8865 492 RYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEP 571 (749)
Q Consensus 492 ~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP 571 (749)
+||.|++|+|++|.++.+.+.. . .| ....|+.|+++|++||+|||+++|||||||||+|+|+|+||||
T Consensus 599 ~FP~f~gs~~~~~~~~r~~~~~----~--~~------~~~~~~~Lre~I~k~GiRNS~ltaIAPTGSiS~Iag~SsGIEP 666 (858)
T PRK08115 599 SFPFLVGQTEEETAKLREAFIN----T--GY------MKKMPEDIREDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEP 666 (858)
T ss_pred CCCcccCCchhhhhHHHhhhhh----c--cc------cccCcHHHHHHHHHhCcchhceeeeCChHHHHHHhCCCcccCc
Confidence 9999999999998766543310 0 11 1235889999999999999999999999999999999999999
Q ss_pred cccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHc
Q psy8865 572 TYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQ 651 (749)
Q Consensus 572 ~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q 651 (749)
+|+++|.|++..|+|.++|+++++++.+.+.| ..|++++++|+|||||+|++||+|||++|
T Consensus 667 ifs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~-------------------~~~~~l~~~F~TA~eI~p~~hI~mqAa~Q 727 (858)
T PRK08115 667 YFSFSYYRSGRLGKFIEVKADIVQEYLDKHPE-------------------ADENHLPEWFISAMELKPEAHADVQCIIQ 727 (858)
T ss_pred CeeeeEEEEeccCceEEEchHHHHHHHHhCCC-------------------CCchhHHHhcccHhhCCHHHHHHHHHHHc
Confidence 99999999999999999999988766544322 14677888999999999999999999999
Q ss_pred ccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcE-EEEeCCCccccc
Q psy8865 652 KWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698 (749)
Q Consensus 652 ~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt-~YY~rs~~~~~~ 698 (749)
||||||||+|||+++ .+.++|.++|++||++|||| +||.+.-...++
T Consensus 728 k~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qv 776 (858)
T PRK08115 728 RWVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQV 776 (858)
T ss_pred cccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCcccee
Confidence 999999999999985 58999999999999999999 677765555444
No 21
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=100.00 E-value=2.6e-145 Score=1259.50 Aligned_cols=571 Identities=35% Similarity=0.583 Sum_probs=537.8
Q ss_pred HHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc--CcH---HHHHHHHHHHhcCCccccCccccc-cCccccccccee
Q psy8865 85 ILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES--NRE---KCAIKFYNLLSSFNFMCSTPTLFN-SGTIRSQLSSCY 157 (749)
Q Consensus 85 ~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~--~~~---~~a~~fY~~ls~~~~~~atPtl~n-aGt~~~qlsSCf 157 (749)
+|.+||++|+ +|..+|+||++|||||++++..+. .+. +++++||++|++++|+|+||||+| +|+.++||||||
T Consensus 1 ~l~~rY~~k~~~g~~~E~~~~~~~RvA~~la~~~~~~~~~~~~~~~~~fy~~l~~~~~~patp~l~n~~g~~~~~lssCf 80 (586)
T TIGR02504 1 VLAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMPNSPTLMNAGGTRLGQLSACF 80 (586)
T ss_pred ChhhhhceecCCCCccCCHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHcCeEEccchhhhcccCCCCCcceeeE
Confidence 3689999997 677789999999999999998774 232 689999999999999999999999 899999999999
Q ss_pred eccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEee
Q psy8865 158 LSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237 (749)
Q Consensus 158 l~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl 237 (749)
++.|+||+++|+++++++++++|.|||||+|+|+|||+|++|+|++|.||||||||++||+++.+|+|||+||||.|+||
T Consensus 81 v~~v~Ds~~~I~~~~~~~a~i~k~GGGvG~~~s~iRp~G~~i~g~~g~ssG~v~~~~~~d~~~~~v~qgG~RrgA~~~~l 160 (586)
T TIGR02504 81 VLPVEDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKGAKVSGTGGVASGPVSFMRVFDAAAGVIKQGGTRRGAQMGIL 160 (586)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHcCCcccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcC
Q psy8865 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLG 317 (749)
Q Consensus 238 ~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g 317 (749)
++|||||++||++|+++|+ .+++|+||+|||+|||+|++|++|+||+|.+++.+.++|| |+. .+
T Consensus 161 ~~~HpDi~~Fi~~K~~~~~----~~~~n~sv~i~D~Fm~~v~~d~~w~L~~p~~~~~~~~~y~--~~~----------~~ 224 (586)
T TIGR02504 161 DVWHPDIEEFIEAKKKEGK----LTNFNISVGVTDAFMEAVEADEEYKLRNPRTGEEIEELAE--LDP----------KN 224 (586)
T ss_pred eCCCchHHHHHHhcccccc----hhcceehcccCHHHHHHHHcCCCeEEECCCcccccccccc--ccc----------cc
Confidence 9999999999999998876 6799999999999999999999999999999999999998 321 12
Q ss_pred CceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhc
Q psy8865 318 KIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK 397 (749)
Q Consensus 318 ~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~ 397 (749)
. .+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|.|++||||+||+|++++ +|||+||||++|++
T Consensus 225 ~--~~~~v~Arel~~~I~~~~~~tGePgi~f~D~~N~~~~~~~~~~i~~tNpC~Ei~l~~~~----~CnL~SiNL~~~v~ 298 (586)
T TIGR02504 225 K--VYKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQPLLPYE----SCNLGSINLAKFVK 298 (586)
T ss_pred c--eeeEEEHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCccCCceeeccCCccccccCCc----ccchHHhhHHHHhh
Confidence 2 47999999999999999999999999999999999999999999999999999999874 89999999999998
Q ss_pred cC--CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy8865 398 NG--KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475 (749)
Q Consensus 398 ~g--~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i 475 (749)
++ .||+++|+++|+++||+||+|||++.||+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||.|
T Consensus 299 ~~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~lgi~y~S~ea~~~~~~i~~~i 378 (586)
T TIGR02504 299 NGFGSFDFERLREVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYDSEEARAFAEELMAFI 378 (586)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhcCCccccchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHH
Confidence 65 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccC
Q psy8865 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAP 555 (749)
Q Consensus 476 ~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaP 555 (749)
+++|+++|++||+|+|+||.|++|+|++|.++... . ....|++|++.|++||+|||+++||||
T Consensus 379 ~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~-----------~------~~~~~~~L~~~i~~~G~RNs~l~aiaP 441 (586)
T TIGR02504 379 ADAAYRASAELAKERGPFPLFEASRYEMGRAMGAR-----------I------PSALPAELREAIAKYGIRNAQLTTIAP 441 (586)
T ss_pred HHHHHHHHHHHHHHhCCCCCcccChhhcccccccc-----------c------cccChHHHHHHHHHhCCCccceeeeCC
Confidence 99999999999999999999999999999987221 0 123699999999999999999999999
Q ss_pred CccccccccccccccccccchhheecCCC-cceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhccc
Q psy8865 556 TATISNIIGVSASIEPTYRNLHIKSNLSG-EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYAT 634 (749)
Q Consensus 556 T~t~S~i~g~s~gieP~~~~~y~r~~~~G-~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~t 634 (749)
|||||+|+|||+||||+|+++|+|++..| +|.++|++|.+.|+++|+|++++...+. .+|++++++. |++++.+|+|
T Consensus 442 TgtiS~i~g~S~gieP~~a~~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~~~-~~gs~~~~~~-p~~~~~~f~t 519 (586)
T TIGR02504 442 TGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYVD-EKGTVEGAPG-PEELPKVFVT 519 (586)
T ss_pred CchhhhhcCCCCccccchhhhhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHHHH-cCCCcccCCC-chhHHhhccC
Confidence 99999999999999999999999998877 9999999999999999999998887654 5799999999 9999999999
Q ss_pred ccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Q psy8865 635 AFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 635 A~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~ 696 (749)
|+||+|++||+|+|++|||||||||+|+|+++ .+.++|.++|++||++||||+||+|+.+..
T Consensus 520 A~di~~~~~i~~~a~~Q~~vD~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~yR~~s~~ 582 (586)
T TIGR02504 520 ANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVYRDGSRS 582 (586)
T ss_pred cccCCHHHHHHHHHHHcCcccccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCcC
Confidence 99999999999999999999999999999985 699999999999999999999999987654
No 22
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=100.00 E-value=8.8e-144 Score=1240.26 Aligned_cols=564 Identities=24% Similarity=0.346 Sum_probs=508.3
Q ss_pred ccccCCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhcccc--CcHHHHHHHHHHHhcCCccccCccccccCcc
Q psy8865 72 PERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES--NREKCAIKFYNLLSSFNFMCSTPTLFNSGTI 149 (749)
Q Consensus 72 ~~rD~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~--~~~~~a~~fY~~ls~~~~~~atPtl~naGt~ 149 (749)
--+++.++-++.++|.+|||++.+ ++||++|||||++||..|. ++.+++++||++|+++ ++|+||||+||||+
T Consensus 6 ~~~~~~~~~~~~~~l~~rYl~~~e----~~p~~~~~RVA~~la~~e~~~~~~~~~~~fy~~ls~~-~~patp~l~NaG~~ 80 (595)
T PRK06948 6 MIGDMDEQPICDAVFADRYALPGE----TSRAQVFARVARALALAEPPDTRAGAARRFYRNLLNG-AIGAGRIMANAGAA 80 (595)
T ss_pred CCCCCCCCHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcC-CcccChhhhcCCCC
Confidence 346778999999999999999841 3799999999999999874 5788999999999995 58999999999999
Q ss_pred c-ccccceeeccCCCC------hhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHH
Q psy8865 150 R-SQLSSCYLSTVPDD------LYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVA 222 (749)
Q Consensus 150 ~-~qlsSCfl~~v~Ds------l~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~ 222 (749)
+ +||||||+++|+|| +++|+++++++|+++|.|||||+|||+|||+|++|+|++|+|||||||||+||+++.+
T Consensus 81 ~~~~lssCfv~~v~d~~~~~~~~~~i~~~~~~~a~~~k~GGGvG~~~s~lR~~G~~i~~~~g~ssG~v~fm~~~d~~~~~ 160 (595)
T PRK06948 81 PDQTMVNCFVHPIRAPAALTAVHPNLDRALDDARLTLLMGGGIGYDFSAIPPADARPDADHPDSPGVCAALDRFDRICAA 160 (595)
T ss_pred CCCceeeeEEcccccccccccchhhHHHHHHHHHHHHhhcCeeeecccccCCCCCcCCCCCCCCCChhhHHHHHHHHHHH
Confidence 8 68999999998866 5999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchH
Q psy8865 223 VNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302 (749)
Q Consensus 223 v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~ 302 (749)
|+|||+||||.|+||++|||||++||++|+ +..|++++|+||+|||+|||+|++|++|+||+|+++ ++++|++
T Consensus 161 v~Qgg~RrGA~~~~L~~~HpDI~~Fi~~K~----~~~~~~~~n~sv~i~D~FM~~v~~d~~~~L~~p~~~---~~~~~~~ 233 (595)
T PRK06948 161 LPFRDGRRGAQMAVLRCDHPDLLAFVAAKR----GRARWTTFNLSVAVTDAFMQAVAQDLPWALRHRAPP---RRAAGGA 233 (595)
T ss_pred HHhCCCCccCeEEEEcCCCCCHHHHHHhcC----CccccccceeeEeECHHHHHHHHcCCCeEeeCCccc---ccccccc
Confidence 999999999999999999999999999997 357899999999999999999999999999999864 3455654
Q ss_pred HHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcc
Q psy8865 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEI 382 (749)
Q Consensus 303 Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~ 382 (749)
+. + .+|+. ++++|+||+||++|++++|+||+|||+|+|++|+++|++|.|.|++||||+||+|+++
T Consensus 234 ~~------~---~~g~~-~~~~v~Arel~~~I~~~~~~tGePgi~F~D~iN~~n~~~~~g~I~~tNpC~Ei~L~~~---- 299 (595)
T PRK06948 234 LR------G---ADGAW-TYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHERIDATNPCGEQPLPPY---- 299 (595)
T ss_pred ch------h---ccCcc-eeeEEcHHHHHHHHHHHHHHHCCCeEEeHhHHHhhCCCccCCcEEeecCCCCcccCCC----
Confidence 32 1 23543 4799999999999999999999999999999999999999999999999999999986
Q ss_pred cccccccccchhhhcc-------CCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHc
Q psy8865 383 GVCNLGSINLTLHMKN-------GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIM 455 (749)
Q Consensus 383 avCNL~SINL~~~v~~-------g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~l 455 (749)
++||||||||++||+. +.||+++|+++|+++|||||||||++.||+|+++++++++|+||||+|||||+|+++
T Consensus 300 ~~CNLgSINL~~~v~~~~~~~~~~~~D~~~l~~~v~~avR~LDnvid~~~~p~~~~~~~~~~~R~IGLGvmGlad~L~~l 379 (595)
T PRK06948 300 GSCVLGPIDLSRFVRHPFGVGGEPRFDFAALATAVRIQVRMLDNALDLTRWPLAAHAREARQKRRIGVGVTGLADALTMM 379 (595)
T ss_pred CceeccceeHHHHhccccccccccccCHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhcCCCceecHHHHHHHHHHc
Confidence 4899999999999872 369999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHH
Q psy8865 456 KIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535 (749)
Q Consensus 456 gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~ 535 (749)
|++|+|+||++|+++|||.|+++|++||++||+|+|+||.|++|+|.+|.+.. ...|++
T Consensus 380 gi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~~---------------------~~~~~~ 438 (595)
T PRK06948 380 RLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRAG---------------------PPLPHA 438 (595)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcccccc---------------------ccCcHH
Confidence 99999999999999999999999999999999999999999999999885421 123899
Q ss_pred HHHHHHHhCCcccceeeccCCccccccc--cccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhh
Q psy8865 536 LRNRIKKFGMRNSNCVAIAPTATISNII--GVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKY 613 (749)
Q Consensus 536 Lr~~i~~~G~RNs~l~AiaPT~t~S~i~--g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~ 613 (749)
|+++|++||+|||++||||||||||+|+ |||+||||+|+++|+|++..|++.... ++.+....
T Consensus 439 l~~~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~fa~~y~R~~~~g~~~~~~-----------~~~~~~~~---- 503 (595)
T PRK06948 439 VCHAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGARG-----------MRAENHAY---- 503 (595)
T ss_pred HHHHHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccceeeeEEEEeccCCCcccc-----------eeeechhh----
Confidence 9999999999999999999999999997 599999999999999999888764311 11111110
Q ss_pred cCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCC
Q psy8865 614 FDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRS 692 (749)
Q Consensus 614 ~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs 692 (749)
..++.+...|++++++|+||+||+|++||+|||++|||||||||+|||+++ .+.++|.++|++||++||||+||+|+
T Consensus 504 --~~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKgit~~R~ 581 (595)
T PRK06948 504 --RLFRSLRGERAALPDYFVTAADVAPADHLAMRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKGITIFRP 581 (595)
T ss_pred --hhccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcccchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 112334556778899999999999999999999999999999999999986 59999999999999999999999999
Q ss_pred Ccccccc
Q psy8865 693 ISANYAK 699 (749)
Q Consensus 693 ~~~~~~~ 699 (749)
.+...+.
T Consensus 582 ~~~~~~v 588 (595)
T PRK06948 582 DPALDAV 588 (595)
T ss_pred CcccCCc
Confidence 8876543
No 23
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=100.00 E-value=7.7e-143 Score=1224.53 Aligned_cols=527 Identities=30% Similarity=0.394 Sum_probs=490.7
Q ss_pred ccccCCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccc
Q psy8865 72 PERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRS 151 (749)
Q Consensus 72 ~~rD~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~ 151 (749)
++++.-|+|+|+++|.+||++++ |+||++|||||+++|..+ .+.+++++||++|++++|+||||||+|+||+++
T Consensus 12 ~~~~~~~~~~~~~~l~~rYl~~~-----es~~~~~~RVA~~la~~~-~~~~~~~~fy~~Ls~~~f~patP~l~NaGt~~~ 85 (571)
T TIGR02510 12 GEIPEFANAHGRLMFKKGYLLKG-----ESVEEAFKEIAQRAAAHD-IREEAEEKFFDLLARGKLALATPIFANTGLDRG 85 (571)
T ss_pred ccchhhhhHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHhccc-cchHHHHHHHHHHHcCCeecCChhhhcCCCCCC
Confidence 35556689999999999999984 899999999999999865 356789999999999999999999999999999
Q ss_pred cccceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhh--cCCCc
Q psy8865 152 QLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVN--QGGKR 229 (749)
Q Consensus 152 qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~--QgG~R 229 (749)
|++|||+.+|+|||+||+++++++|+++|.|||||+|||+|||+|++|+ ++|+|+|++|||++||.++.+|+ |||+|
T Consensus 86 ~lsSCFv~~v~Dsl~~I~~~~~e~a~l~k~GGGiG~~~S~lR~~G~~I~-~~g~ssG~~~~m~~~d~~~~~i~~~qgg~R 164 (571)
T TIGR02510 86 LPISCAGSYVEDDTADFLEAQAEVAMLAKNGFGTALYLGDIRPRGADIR-DNGEHNGADAFAPLFDNFIETFNKVAAAGR 164 (571)
T ss_pred CeeeEEeCCCCCCHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCccC-CCCCCCCcchHHHHHHHHHHHHHHhhCCcC
Confidence 9999999999999999999999999999999999999999999999998 57899999999999999999999 99999
Q ss_pred ccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHH
Q psy8865 230 KGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYIL 309 (749)
Q Consensus 230 rGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ 309 (749)
|||+|+||++|||||++||++|+++|+ .+++|+||+++|.||++++++.
T Consensus 165 rGA~~~~L~~~HpDI~eFi~~K~~~~~----~~~~~~~v~~~d~f~~~~~~~~--------------------------- 213 (571)
T TIGR02510 165 RGECAAYLDFEHGDFEELLGIQLEHPA----SAHLFWGFEKEDRWLEELIAGD--------------------------- 213 (571)
T ss_pred ccceEEEEcCCcccHHHHHHhcccCCC----CCceeeeeccCHHHHHHHHhCC---------------------------
Confidence 999999999999999999999998774 6899999999999999998651
Q ss_pred HHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCC--Cccc-eEeeeccccccccCCCCCcccccc
Q psy8865 310 YENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ--QHVG-IIHSSNLCTEITLNTSKNEIGVCN 386 (749)
Q Consensus 310 ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~--~~~g-~I~~SNlC~EI~l~~~~~e~avCN 386 (749)
| +|++||++|+++++|||+|||+|+|++|+++|+ ++.| +|++||||+||+|+++++++++||
T Consensus 214 -------~--------~ar~lw~~I~~~~~etG~P~l~f~D~~N~~~p~~~~~~G~~I~asNlC~Ei~l~~~~~~~~~Cn 278 (571)
T TIGR02510 214 -------G--------EKMARWAELLKMRAETGIGYLFFNDIANEKAPEAFKALGIPIRASNLCTEIALPSDDEESFTCC 278 (571)
T ss_pred -------c--------hHHHHHHHHHHHHHHhCCceEEEhHHhhhhCchhhhhcCCeEEecCCCcceeccCCCCceeeee
Confidence 1 268999999999999999999999999999997 6788 899999999999999999999999
Q ss_pred cccccchhhhccCCCChHHHHHHHHHHHHHHHHHhh-----ccCC---cHHHHHHHhhhcCCcccccchHHHHHHHcCCC
Q psy8865 387 LGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVID-----INYY---AVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458 (749)
Q Consensus 387 L~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId-----~~~y---p~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~ 458 (749)
||||||++|.. .++.++|++|||||||||| ++.+ |+++++++++++|+||||||||||+|+++|||
T Consensus 279 LgSiNL~~~~~------~~~~~~v~~avr~LDnViD~~i~~~~~~p~~~~~~~~~~~~~~R~IGLGvmGlad~L~~lgi~ 352 (571)
T TIGR02510 279 LSSLNLLHWDE------IKDADAIETLVIFLDSVCDDFIAKAEEIPYDTLEKAIRFAEKARAIGLGTLGFHSYLQMNDIA 352 (571)
T ss_pred cchhhHHHHhh------cccccHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhcCCcccchhHHHHHHHHcCCC
Confidence 99999999742 1236899999999999999 4545 46888889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHH
Q psy8865 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRN 538 (749)
Q Consensus 459 y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~ 538 (749)
|+|+||++++++|||+|+|+|++||++||+|+|+|+ |++
T Consensus 353 Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~-----------------------------------------l~~ 391 (571)
T TIGR02510 353 FESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDE-----------------------------------------LAE 391 (571)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcch-----------------------------------------hHH
Confidence 999999999999999999999999999999999853 112
Q ss_pred HHHHhCCcccceeeccCCcccccccc-ccccccccccchhheecCCCcceeecHHHHHHHHHcCCC---hHHHHhhhhhc
Q psy8865 539 RIKKFGMRNSNCVAIAPTATISNIIG-VSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW---DESMIANLKYF 614 (749)
Q Consensus 539 ~i~~~G~RNs~l~AiaPT~t~S~i~g-~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~---~~~~~~~i~~~ 614 (749)
.++++|+|||+++|||||||||+|+| +|+||||+|+++|+|++.+|+|.++||+|.++|+++|+| ++++++.+.+.
T Consensus 392 ~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~fa~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~i~~~ 471 (571)
T TIGR02510 392 VCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLTCNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIEEKMEDIALEH 471 (571)
T ss_pred HHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcchhhhhhhhccCCceEEECHHHHHHHHhcCCccccHHHHHHHHHHc
Confidence 24679999999999999999999996 999999999999999999999999999999999999999 78999999999
Q ss_pred CCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC--CCHHHHHHHHHHHHHcCCcEEEEeCC
Q psy8865 615 DGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN--KSGKKLDETYKLAWLRGLKTTYYLRS 692 (749)
Q Consensus 615 ~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~--~~~~~l~~~~~~Awk~GlKt~YY~rs 692 (749)
+||||+++.+|++++.+|+|||||+|++||+|+|++|||||||||+|||+++ .+.+++.++|++||++||||+|||||
T Consensus 472 ~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~GlK~~YY~rs 551 (571)
T TIGR02510 472 NGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAARQKHIDQAQSINLFFHADEAEPRDANAHRAFADDPGLKALYYLFS 551 (571)
T ss_pred CCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHHccccccccCCccccCCCCCCHHHHHHHHHHHHHcCCCeEEeecc
Confidence 9999999999999999999999999999999999999999999999999974 57899999999999999999999999
Q ss_pred Cccccc
Q psy8865 693 ISANYA 698 (749)
Q Consensus 693 ~~~~~~ 698 (749)
+++.++
T Consensus 552 ~~~~~~ 557 (571)
T TIGR02510 552 ERGAKA 557 (571)
T ss_pred hHHHHh
Confidence 887544
No 24
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=100.00 E-value=3.9e-139 Score=1234.12 Aligned_cols=595 Identities=23% Similarity=0.355 Sum_probs=528.0
Q ss_pred hhccccccCCC----ChhhHHHHHHhcccccCCeE--eecHHHHHHHHHhHhhcccc---------CcHHHHHHHHHHHh
Q psy8865 68 NALLPERDLQF----NYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNES---------NREKCAIKFYNLLS 132 (749)
Q Consensus 68 ~~i~~~rD~~f----~y~g~~~l~~rYllk~~~~~--~E~pq~~~mRVA~~la~~e~---------~~~~~a~~fY~~ls 132 (749)
+.+-..||..| +-.+..+|.+|||.+..|.. .|+|.++|.|||.+++..+. +...+..+||++|+
T Consensus 48 ~~~f~~~~~e~p~~~s~~a~~vl~~rY~~~~~g~~~~e~S~~q~f~RVA~~~a~~~~~~~~~~~~~~~~~f~~ef~~~L~ 127 (953)
T PRK06556 48 KVNFEQRDVEFPKFWSVNATNIVASKYFRGAVGTPERENSLKQLIDRVVKTYTDAGREHGYFATEEDAEIFEHELTWLLL 127 (953)
T ss_pred ceeeeccCCcCCccccHHHHHHHHhhhhccCCCCCcccCCHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 44456677665 67889999999999865654 47999999999999997642 22346678999999
Q ss_pred cCCccccCccccccCcc-cccccceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCccc
Q psy8865 133 SFNFMCSTPTLFNSGTI-RSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIP 211 (749)
Q Consensus 133 ~~~~~~atPtl~naGt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp 211 (749)
+++|+|+||||+|+|+. ++|||||||+.|+|||++|++++++.|+|+|+|||+|+|||+|||+|++| +++|+||||||
T Consensus 128 ~~~f~pnSP~l~NaG~~~~~qlssCFvl~v~Dsle~I~~~~~~~a~i~K~GGGvG~nfS~LRp~G~~i-s~gG~sSGpvs 206 (953)
T PRK06556 128 HQKFSFNSPVWFNVGTESPQQVSACFILSVDDSMESILNWYKEEGMLFKGGSGTGTNLSRIRSSKELL-SGGGTASGPVS 206 (953)
T ss_pred cCcEecCChHhhcCCCCCCCceeeEEeCCCCCCHHHHHHHHHHHHHHHhcCCcEEEeccccCCCCCcC-CCCCCCCChhh
Confidence 99999999999999997 57999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHHHHHHHHHhhcCC-CcccceEEeeeCCccCHHHHHHHhhhcCccc-------------------ccccccccccccC
Q psy8865 212 FLKVVNDVAVAVNQGG-KRKGAICAYLETWHMDIEEFIELRKNTGDDR-------------------RRTHDMNIAIWVP 271 (749)
Q Consensus 212 ~lk~~~~~~~~v~QgG-~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~-------------------~r~~~~~~sv~ip 271 (749)
|||+||+++.+|+||| +||||.|+||++|||||++||++|...++.. .+..|+|+||+||
T Consensus 207 Fmki~D~~~~~ikqGG~tRRGA~mv~L~vdHPDI~eFI~~K~~e~~k~~~l~~~~~~~d~~~~~~~~v~~~n~N~SV~vt 286 (953)
T PRK06556 207 FMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFIETKAKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVS 286 (953)
T ss_pred HHHHHHHHHHHHHcCCCccCcceEEEecCCCccHHHHHHhcccchhhhhhhhhcccccccccccccccccccccceEEEC
Confidence 9999999999999999 5999999999999999999999997542111 1356889999999
Q ss_pred HHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecch
Q psy8865 272 DLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351 (749)
Q Consensus 272 D~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~ 351 (749)
|.||++|++|++|.|++|.+ |+ +.++|+||+||++|++++|+||+|||+|+|+
T Consensus 287 D~FM~aV~~d~~~~L~~~~~-------------------------g~--v~~~v~AreLw~~I~~~aw~tGdPgi~F~D~ 339 (953)
T PRK06556 287 DEFMRAVENDGEFGLRARTD-------------------------GE--VIETVDAKELFRKIAEAAWECADPGIQYDDT 339 (953)
T ss_pred HHHHHHHHcCCCeEEecccc-------------------------Cc--eeeeeeHHHHHHHHHHHHHHhCCCeEEechh
Confidence 99999999999999999854 43 4789999999999999999999999999999
Q ss_pred hhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhc-cCCCChHHHHHHHHHHHHHHHHHhhccCCcHHH
Q psy8865 352 CNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKK 430 (749)
Q Consensus 352 ~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~-~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~ 430 (749)
+|+++|+++.|.|++||||+||+|+++. +|||+||||.+|++ ++.||++.|+++|+++|||||+|||++.||+|+
T Consensus 340 iNr~~~~~~~g~I~aSNpC~E~~l~~~~----sCNLgSINL~~fv~~~~~fD~~~l~~aV~~avr~LD~vId~~~yP~~~ 415 (953)
T PRK06556 340 INDWHTCPESGRINASNPCSEYMFLDNS----SCNLASLNLMKFLRDDGTFDVESFRHAVELVITAMEISICFADFPTEK 415 (953)
T ss_pred hhhhCCCcccCceEeecCccccccCCcc----cccceeeEHHHhhcccCccCHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 9999999999999999999999999875 79999999999996 568999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccC-CCCchh
Q psy8865 431 AKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQ-GILPQD 509 (749)
Q Consensus 431 ~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~-G~lp~d 509 (749)
+++.++++|+||||+|||||+|+++||||+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+|.. |+++.+
T Consensus 416 i~~~~~~~R~IGLGvmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s~~~~~~v~~~h 495 (953)
T PRK06556 416 IARNTRAFRQLGLGYANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRKH 495 (953)
T ss_pred HHHHHHhccchhhhhhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754 444322
Q ss_pred --hHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccc-cccccccccchhheec-CCCc
Q psy8865 510 --SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGV-SASIEPTYRNLHIKSN-LSGE 585 (749)
Q Consensus 510 --~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~-s~gieP~~~~~y~r~~-~~G~ 585 (749)
.+.........+ ..+......+|++|++.+++||+|||+++|||||||||+|+|| |+||||+|+++|.|+. ..|+
T Consensus 496 ~~~~~~~~~~~~~~-~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~fa~v~~rk~~~~G~ 574 (953)
T PRK06556 496 AAANDAIRPLGEVD-AALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFALVKYKKLVGGGS 574 (953)
T ss_pred hhhhhhhhhhccCc-hhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccceeeeeeEEeccCce
Confidence 111110000000 0011223568999999999999999999999999999999999 9999999999988875 5788
Q ss_pred ceeecHHHHHHHHHcCCChHHHHhhh--hhcCCCcccccCCChhHHhhccccc-------CCCHHHHHHHHHHHcccccc
Q psy8865 586 FTEINRYLVKELKKKGLWDESMIANL--KYFDGNLSQISRIPDDLRKIYATAF-------EISPNWIIEAGSVRQKWIDQ 656 (749)
Q Consensus 586 f~~vn~~l~~~L~~~g~~~~~~~~~i--~~~~Gsvq~i~~ip~~~k~~y~tA~-------ei~~~~~i~~~a~~Q~~iDq 656 (749)
|.+||++|.+.|+++|+|++++.+.+ ...+|++++++.||++.+.+|+||| ||+|++||+|+|++||||||
T Consensus 575 ~~~vN~~~~~~L~~~G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~hI~m~Aa~Q~fID~ 654 (953)
T PRK06556 575 MKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMGHVRMMAAVQPFLSG 654 (953)
T ss_pred eEEecHHHHHHHHHcCCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHHHHHHHHHHhhhccc
Confidence 99999999999999999998865432 3467999999999999999999999 99999999999999999999
Q ss_pred cCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCCCcc
Q psy8865 657 SQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRSISA 695 (749)
Q Consensus 657 s~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs~~~ 695 (749)
|||+|||+++ ++.++|.++|++||++|||+++|.|.-+.
T Consensus 655 aiSkTvnlp~~at~edv~~~y~~Awk~GlKgit~YRdgsk 694 (953)
T PRK06556 655 AISKTVNMPEDATVEDIEEVYLEGWKLGLKALAIYRDNCK 694 (953)
T ss_pred ccceEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEcCCCc
Confidence 9999999984 79999999999999999999766675543
No 25
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....
Probab=100.00 E-value=2.7e-139 Score=1201.00 Aligned_cols=533 Identities=45% Similarity=0.770 Sum_probs=473.4
Q ss_pred ccceee-ccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCccc
Q psy8865 153 LSSCYL-STVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKG 231 (749)
Q Consensus 153 lsSCfl-~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrG 231 (749)
|||||| ..++||+++|+++++++++++|.|||||+|+|.|||+|++|+|++|.|+|+|||||++|+++.+++|||+|||
T Consensus 1 LssCfl~~~~~Ds~~~I~~~~~~~~~~~~~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~~~~~~~~~~~~i~q~g~RrG 80 (538)
T PF02867_consen 1 LSSCFLMISVEDSLESIFDTLKEAARLSKYGGGVGIDFSNLRPKGSPIRGTGGKSSGPVSFMKLFDSSARAINQGGKRRG 80 (538)
T ss_dssp S-SEEEEEESSSSHHHHHHHHHHHHHHHCTT-EEEEEGTTS--TTCBETTTSSBCCHHHHHHHHHHHHHHHSSSTTSSST
T ss_pred CceeeccCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcccccCCCCCcccccCCCCCCchhHHHHHHHHhhHhhhcccccc
Confidence 799999 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHH
Q psy8865 232 AICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYE 311 (749)
Q Consensus 232 A~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye 311 (749)
|.|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+||+|+++|+|+++||++|++.|.++|
T Consensus 81 a~~~~l~~~HpDi~~fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~~~~w~L~~p~~~~~l~~~~g~~f~~~y~~~~ 160 (538)
T PF02867_consen 81 AQMVYLDIWHPDIEEFIDAKNNNGDEERRLRNLNISVNIPDEFMEAVENDEDWYLFDPRDAPELYDLYGEEFEKEYERYE 160 (538)
T ss_dssp EEEEEEETTBTTHHHHCTTTSSSSTCCG-STTEEEEEEE-HHHHHHHHTT-EEEEBCTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred ceeeeccCCHHHHHHHHHHhhcccchhhhhcccceeEEecHHHHHHhhcCCCCEEECCCcccchhhhhCCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCccccccccccc
Q psy8865 312 NQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSIN 391 (749)
Q Consensus 312 ~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SIN 391 (749)
+. +++ .+++|+|++||++|++++++||+|||+|+|++|+++|+++.|+|++||||+||+|+++++++++|||+|||
T Consensus 161 ~~---~~~-~~~~v~Ar~l~~~I~~~~~~tG~Pgi~f~D~~Nr~~~~~~~~~I~~sN~C~Ei~l~~~~~~~~~CnL~SiN 236 (538)
T PF02867_consen 161 RN---GKI-RKKTVPARELWEKILESAWETGEPGIIFIDNVNRHNPLKHGGPIRASNPCGEIPLPTSPDPYASCNLGSIN 236 (538)
T ss_dssp HT---TTS-EEEEEEHHHHHHHHHHHHHHHS-SEEEEHHHHHHTSTTGGTSTEEEE-TTSSSEEE-BTTBTEEEEEEEEE
T ss_pred cC---CCc-eeccccHHHHHHHHHHHHhhhCCceehhhHHHHhcCcccCCCeEeecCCCcceeecccccccccceeeeec
Confidence 54 444 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccC--CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHH
Q psy8865 392 LTLHMKNG--KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469 (749)
Q Consensus 392 L~~~v~~g--~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~ 469 (749)
|++|++++ .||++.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||+++++
T Consensus 237 L~~~~~~~~~~~d~~~l~~~v~~avr~Ld~vid~~~~p~~~~~~~~~~~R~iGlGv~Gla~~L~~~gi~y~S~ea~~~~~ 316 (538)
T PF02867_consen 237 LARFVEDPFGRFDWEELREVVRLAVRFLDNVIDINDYPLPEARRANKRYRSIGLGVMGLADMLAKLGIPYDSEEARELAD 316 (538)
T ss_dssp GGGGCETTSCEETHHHHHHHHHHHHHHHHHHHHHS--SSHHHHHHHHHH--EEEEEESHHHHHHHTT--TTSHHHHHHHH
T ss_pred hhhhcccccccccHHHHhhHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccccccHHHHHHhCCcCcCCchHHHHHH
Confidence 99999865 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccc
Q psy8865 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549 (749)
Q Consensus 470 ~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~ 549 (749)
+|||.|+|+|++||++||+|+|+||.|++|+|++|++|++.++...+.+. ...........+|++||++|++||+|||+
T Consensus 317 ~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~W~~Lr~~i~~~G~RNs~ 395 (538)
T PF02867_consen 317 EIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVDERS-KVEKGLSIPTEDWDELREDIKKYGLRNSQ 395 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCCGSS-HHHCT---TTSHHHHHHHHHHHH--SSSS
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhcccccc-ccccccccchhhHHHHHHHHhhhcCCcce
Confidence 99999999999999999999999999999999999999998754321110 00000111234899999999999999999
Q ss_pred eeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHH
Q psy8865 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLR 629 (749)
Q Consensus 550 l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k 629 (749)
++|||||||||+|+|+|+||||+|+++|.|++..|+|.++||++.+.|+++|+|+++++++|..++|++|+++.+|++++
T Consensus 396 ~~aiAPTgs~S~i~g~S~gIeP~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~gsv~~~~~~~~~~~ 475 (538)
T PF02867_consen 396 LTAIAPTGSISLIAGTSSGIEPIFANVYTRRSLSGEFPVVNPYLLRDLKELGIWDEELIEEILRHQGSVQGLPELPDELK 475 (538)
T ss_dssp -BBBS--TTHHHHHTS-STTS--SSSEEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHHHHHHHTTTCCTT-TTS-HHHH
T ss_pred eecCCCCCCeEeecCcCceeccchhhhhhhhhhcCCCcccChHHHHHHHHhCCcHHHHHHHHHhhhccccccccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCHHHHHHHHHHHcccccccCcceeeeC-CCCHHHHHHHHHHHHHcCCcE-EEEe
Q psy8865 630 KIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-NKSGKKLDETYKLAWLRGLKT-TYYL 690 (749)
Q Consensus 630 ~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~-~~~~~~l~~~~~~Awk~GlKt-~YY~ 690 (749)
.+|+|||||+|++||+|+|++|||||||||+|+|++ +.+.++|.++|++||++|||| +||+
T Consensus 476 ~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~tyY~ 538 (538)
T PF02867_consen 476 DVFKTAFEIDPEDHIRMQAARQKFVDQSISKTLNLPSDATVEDVAELYLYAWKLGLKGITYYR 538 (538)
T ss_dssp HHT--GGGSCHHHHHHHHHHHHTTSSS-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEEECEE
T ss_pred hhcccHHhCCHHHHHHHHHHhhccCccCcCceeeecCCCCHHHHHHHHHHHHHhCCCeeEEeC
Confidence 999999999999999999999999999999999997 478999999999999999999 8885
No 26
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=100.00 E-value=4.4e-132 Score=1115.10 Aligned_cols=454 Identities=54% Similarity=0.893 Sum_probs=441.7
Q ss_pred HHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccceeeccCCCChhhHHHHHHHHHHHHhh
Q psy8865 102 PQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKY 181 (749)
Q Consensus 102 pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~lsk~ 181 (749)
||++|||||++||.. +.+++++||++|++++|+||||||+|+|++++||||||++.++||++||+++++++++++|.
T Consensus 1 pq~~~~rvA~~la~~---~~~~~~~fy~~l~~~~~~patp~l~naG~~~~~lssCfl~~v~Ds~e~i~~~~~~~~~l~~~ 77 (460)
T cd01679 1 PQDRLMRVALGLASG---DLEWAKEFYDLLSKQRFTPATPTLFNAGTPRGQLSSCFLLTVDDSLESIYDTIKECAQLSKI 77 (460)
T ss_pred ChHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCeecCCHHhhcCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 899999999999975 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccc
Q psy8865 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRT 261 (749)
Q Consensus 182 gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~ 261 (749)
|||||+|+|+|||+|++|+|++|.|+||||||++||+++.+++|||+||||.|+||++|||||++||++|+++|+++.|+
T Consensus 78 ggGvG~~~s~iRp~G~~i~~~~g~ssG~v~~~~~~~~~~~~i~qgg~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~~~r~ 157 (460)
T cd01679 78 GGGIGLNLSNIRATGSPIRGTNGASNGVIPFLKLLNDTARYVDQGGQRKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRA 157 (460)
T ss_pred CCEEEEeccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHcCCccccceEEEEeCCCCcHHHHHHHhhccCchhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhc
Q psy8865 262 HDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFET 341 (749)
Q Consensus 262 ~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~et 341 (749)
+++|+||||||+||++|+ |+||++|++++++|
T Consensus 158 ~~~n~~v~i~D~Fm~~v~------------------------------------------------r~l~~~I~~~~~~t 189 (460)
T cd01679 158 RDLFYGVWIPDLFMERVE------------------------------------------------RDLWRKILESQFET 189 (460)
T ss_pred hcCceeeeeCHHHHHHHH------------------------------------------------HHHHHHHHHHHHHh
Confidence 999999999999999996 69999999999999
Q ss_pred CCeEEEecchhhhhCCCCccceEeeeccccccccCCC-----CCcccccccccccchhhhccCCCChHHHHHHHHHHHHH
Q psy8865 342 GHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTS-----KNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416 (749)
Q Consensus 342 G~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~-----~~e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~ 416 (749)
|+|||+|+|++|+++|+++.|.|++||||+||+|+++ .+++++|||+||||++|++ +++|+++|+++||+
T Consensus 190 G~P~i~f~D~~N~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~~~~~~~~CnL~sinL~~~v~-----~~~l~~~v~~avr~ 264 (460)
T cd01679 190 GYPYILFKDTCNRKNPQKHLGTIKSSNLCTEILQPTSPSEDEPGEDAVCNLASINLGNFVT-----FEKLEEVVKLAVRA 264 (460)
T ss_pred CCcHHHhhHHHHhcCCcccCCeEEeeccccccccCCccccccCCCcceeecHHhHHHHHhC-----hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 6789999999999999984 89999999999999
Q ss_pred HHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy8865 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSY 496 (749)
Q Consensus 417 LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f 496 (749)
||+|||.+.||+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||.|+|+|+++|++||+|+|
T Consensus 265 lD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G----- 339 (460)
T cd01679 265 LDNVIDLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG----- 339 (460)
T ss_pred HHHHHhccCCCcHHHHHHHHhcCcccccchHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccch
Q psy8865 497 DGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNL 576 (749)
Q Consensus 497 ~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~ 576 (749)
|+|||+++|||||||||+|+|+|+||||+|+++
T Consensus 340 -----------------------------------------------G~RNs~l~aiaPTgs~S~l~g~S~gieP~~a~~ 372 (460)
T cd01679 340 -----------------------------------------------GLRNSLLLAIAPTASISQILGATPSIEPITSNI 372 (460)
T ss_pred -----------------------------------------------CccccceeeeCCccHHHHhcCCCCCcCccccce
Confidence 789999999999999999999999999999999
Q ss_pred hheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccc
Q psy8865 577 HIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656 (749)
Q Consensus 577 y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDq 656 (749)
|+|++.+|+|.++||+|.++|++.| +|+|||||+|++||+|+|++||||||
T Consensus 373 ~~R~~~~g~~~~~n~~l~~~~~~~g-----------------------------~f~ta~di~~~~~i~~~a~~Q~~vDq 423 (460)
T cd01679 373 YVRRVLSGEFPVVNPHLEKDLWEYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHIDQ 423 (460)
T ss_pred eEEEccCCcEEEECHHHHHHHHHcC-----------------------------ccccHHhCCHHHHHHHHHHHccCccc
Confidence 9999999999999999988876543 69999999999999999999999999
Q ss_pred cCcceeeeCC-CCHHHHHHHHHHHHHcCCcEEEEeCC
Q psy8865 657 SQSLNIYISN-KSGKKLDETYKLAWLRGLKTTYYLRS 692 (749)
Q Consensus 657 s~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~YY~rs 692 (749)
|||+|+|+++ .+.++|.++|++||++||||+||+||
T Consensus 424 siS~t~~~~~~~~~~~i~~~~~~a~~~GlK~~YY~r~ 460 (460)
T cd01679 424 GQSLNLFLTPPATTRDLNSLYFYAWKKGLKTLYYLRT 460 (460)
T ss_pred ccCceeecCCCCCHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 9999999986 59999999999999999999999997
No 27
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=100.00 E-value=1.1e-130 Score=1105.91 Aligned_cols=455 Identities=36% Similarity=0.595 Sum_probs=435.2
Q ss_pred HHHHHHHhcCCccccCccccccCc-ccccccceeeccCCC-ChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCC
Q psy8865 125 IKFYNLLSSFNFMCSTPTLFNSGT-IRSQLSSCYLSTVPD-DLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGT 202 (749)
Q Consensus 125 ~~fY~~ls~~~~~~atPtl~naGt-~~~qlsSCfl~~v~D-sl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~ 202 (749)
++||++|++++|+|+||||+|+|+ .++|||||||+.|+| |+++|+++++++|+++|.|||||+|+|+|||+|++|+|+
T Consensus 2 ~~~~~~l~~~~~~p~tP~l~naG~~~~~~lssCfv~~~~dds~~~I~~~~~~~a~l~k~gGGvG~~~s~iRp~G~~i~~~ 81 (464)
T cd02888 2 DEFFYLLLSQGFIPNSPTLMNAGTGELGQLSACFVLPVEDDSIEGIFDALKEAALIFKRGGGVGYNFSRLRPKGDIVKST 81 (464)
T ss_pred hHHHHHHHcCCeecCChHhhcCCCCCCCCceeeEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCcccCC
Confidence 689999999999999999999999 999999999999998 999999999999999999999999999999999999999
Q ss_pred CCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCC
Q psy8865 203 NGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKS 282 (749)
Q Consensus 203 ~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~ 282 (749)
+|+|+|+|||||+||+++.+|+|||+||||.|+||++|||||++||++|+++|++ .|++++|+||+|||+||++|++|+
T Consensus 82 ~g~ssG~v~f~~~~d~~~~~i~qgg~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~-~~~~~~n~sv~i~D~Fm~~v~~~~ 160 (464)
T cd02888 82 GGVASGPVSFMRVFDAATGVIKQGGTRRGANMGVLDVDHPDIEEFIDAKMKEEKT-VVLQNFNISVAVTDAFMEAVENDE 160 (464)
T ss_pred CCCCCChHhHHHHHHHHHHHHHhCCcccceeEEEEcCCCccHHHHHHHccccCcc-cccccceeEEEeCHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999988864 578999999999999999999999
Q ss_pred ceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccc
Q psy8865 283 TWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362 (749)
Q Consensus 283 ~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g 362 (749)
+|+||+|+++ ..|+ ++++|+|++||++|++++|+||+|||+|+|++|+++|+++.|
T Consensus 161 ~w~L~~p~~~----------------------~~~~--~~~~v~Arel~~~i~~~~~~tG~Pgi~f~D~~N~~~~~~~~~ 216 (464)
T cd02888 161 PWELRNPREP----------------------DTGK--VYRTVPARELWDKIVEAAWDSADPGVLFIDTINRWNPLPGLG 216 (464)
T ss_pred CeEeeCcccc----------------------CCCc--eeeEeeHHHHHHHHHHHHHHHCCCeEEEhHHHHhhCCccccC
Confidence 9999999875 1233 479999999999999999999999999999999999999999
Q ss_pred eEeeeccccccccCCCCCcccccccccccchhhhccC----CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhc
Q psy8865 363 IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG----KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRH 438 (749)
Q Consensus 363 ~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~g----~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~ 438 (749)
+|++||||+||+|+++ ++|||+||||++|++++ .||+++|+++|+++||+||+|||++.||+|++++.++++
T Consensus 217 ~i~~sNpC~Ei~l~~~----~~CnL~SiNL~~fv~~~~~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~ 292 (464)
T cd02888 217 RINATNPCGEQPLLPY----ESCNLGSINLSKFVKNPFGGASFDFERLREAVRLAVRFLDNVIDVNRYPLPEIAEETKAT 292 (464)
T ss_pred ceeeccCCcccccCCC----CcccchhhhHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHhhcc
Confidence 9999999999999886 48999999999999854 499999999999999999999999999999999999999
Q ss_pred CCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHh
Q psy8865 439 RPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518 (749)
Q Consensus 439 R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r 518 (749)
|+||||+|||||+|+++|++|+|+||++++++|||+|+|+|++||++||+|+|+||.|++|+|++|+++++
T Consensus 293 R~iGlG~~Glad~L~~~gi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~--------- 363 (464)
T cd02888 293 RRIGLGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKVIVN--------- 363 (464)
T ss_pred CceeecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccchhc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHH
Q psy8865 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELK 598 (749)
Q Consensus 519 ~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~ 598 (749)
...+|++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 364 ----------~~~~w~~l~~~i~~~G~RNs~l~aiAPTgs~S~i~g~s~gieP~~------------------------- 408 (464)
T cd02888 364 ----------AKELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPIF------------------------- 408 (464)
T ss_pred ----------chhcHHHHHHHHHHhCcchhceeeeCCcHHHHHHhCCCCCcCCCC-------------------------
Confidence 135799999999999999999999999999999999999999988
Q ss_pred HcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHHHH
Q psy8865 599 KKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDETYK 677 (749)
Q Consensus 599 ~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~~~ 677 (749)
+|++||+|+|++|||||||||+|+|+++ .+.++|.++|+
T Consensus 409 ----------------------------------------~~~~~i~~~a~~Q~~iDqsiS~tin~~~~~t~~d~~~~y~ 448 (464)
T cd02888 409 ----------------------------------------SPEDHVRMQAALQPWVDGAISKTINLPNDATVEDVEAVYL 448 (464)
T ss_pred ----------------------------------------CHHHHHHHHHHHhccchhhhcceeecCCCCCHHHHHHHHH
Confidence 6789999999999999999999999985 69999999999
Q ss_pred HHHHcCCcEEEEeCC
Q psy8865 678 LAWLRGLKTTYYLRS 692 (749)
Q Consensus 678 ~Awk~GlKt~YY~rs 692 (749)
+||++||||++|+|.
T Consensus 449 ~aw~~G~K~~t~yR~ 463 (464)
T cd02888 449 LAWKLGLKGITVYRD 463 (464)
T ss_pred HHHHhCCCEEEEeCC
Confidence 999999999877774
No 28
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.9e-129 Score=1132.57 Aligned_cols=600 Identities=42% Similarity=0.699 Sum_probs=546.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHHHhhccccccchHHHH----hcHHHHHhhccccccCC
Q psy8865 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE----FNLSLLSNALLPERDLQ 77 (749)
Q Consensus 2 ~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~----~~~~~l~~~i~~~rD~~ 77 (749)
+++|+|+++++|++++.+++++..+... ...+...+...++++.++..+.+ .++..+.+.++++||..
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 100 (651)
T COG0209 29 EDDPDVQRLAARLAGSDLRKEAVRQFGR--------FDVLDEKVFALVANGYYDQRLLRLYSREDLDDLNKKILLERDRQ 100 (651)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhccccc--------hhhhhhHHHHHHhhhhhHHHHHHhhhhhHHHHHHHhhhhcchhh
Confidence 5699999999999999999999976532 12345555667777777776543 28889999999999999
Q ss_pred CChhhHHHHHHhccccc-CC-eEeecHHHHHHHHHhHhhccccC--cHHHHHHHHHHHhcCCccccCccccccCcccccc
Q psy8865 78 FNYLGLKILYDRYFLHI-EG-IRIEMPQFFFMRIAMGLSLNESN--REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQL 153 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~-~~-~~~E~pq~~~mRVA~~la~~e~~--~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~ql 153 (749)
|+|+|+++|++||+++. ++ .++|+||++|||||+.||.++.. ++.++++||++|++++|+|+||||+|+|++++||
T Consensus 101 ~~~~~~~~l~~rYl~~~~~~~~~~E~~~~~~~~vA~~la~~e~~~~~~~~a~~~y~~~~~~~~~patPtl~n~~~~~~ql 180 (651)
T COG0209 101 FSYAAAKVLYSRYLLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEWAKEFYDLMSSLRFMPATPTLLNGGTPRGQL 180 (651)
T ss_pred hhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHhccCCccchhhHHHHHHHHHHhcCeeecCCcceecCCCCCCce
Confidence 99999999999999997 34 36999999999999999999854 5789999999999999999999999999999999
Q ss_pred cceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccce
Q psy8865 154 SSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAI 233 (749)
Q Consensus 154 sSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~ 233 (749)
|||||+++.||. +|+|||||++|+++.+|+|||+|+||+
T Consensus 181 ssCfv~~~~dd~-----------------------------------------sG~i~~~k~~d~~~~~i~QgG~R~GA~ 219 (651)
T COG0209 181 SSCFVLPVEDDS-----------------------------------------SGVVPFMKLLDDAFDAINQGGVRRGAQ 219 (651)
T ss_pred eeeEEecccCCC-----------------------------------------CCchhHHHHHHHHHHHHhhcCcCCCCe
Confidence 999999965554 799999999999999999999999999
Q ss_pred EEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHh
Q psy8865 234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQ 313 (749)
Q Consensus 234 ~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~ 313 (749)
|+||++|||||++||++|+++|+++.|.+++++++|+||+||+++++|++|+||+|++.-++.+.+|++|++ |.+|+..
T Consensus 220 ~v~L~~~HpDi~~fl~~k~~~gde~~r~~~~~~~~~i~d~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~~~~-y~~~~~~ 298 (651)
T COG0209 220 AVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFSPRDGYEAPDVYGAEFEE-YAEYEAD 298 (651)
T ss_pred EEeecCCCccHHHHHHHHhhccccceeeeccccceeecHHHHHHHhcCCceEeeCCcccccccccchhhHHH-HHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999866789999999999 8888765
Q ss_pred hhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCC-ccceEeeeccccccccCC-------CCCccccc
Q psy8865 314 TKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ-HVGIIHSSNLCTEITLNT-------SKNEIGVC 385 (749)
Q Consensus 314 ~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~-~~g~I~~SNlC~EI~l~~-------~~~e~avC 385 (749)
. ...+++|+|++||++|++.+++||+||++|+|++|+++|.. +.|+|++||||+||.+++ ..+++++|
T Consensus 299 ---~-~~~~~~v~Ar~l~~~i~~~~~esG~P~l~f~D~~N~~~~~~~~~g~I~~sNlC~Ei~~~~~~~~~~~~~~~~~~C 374 (651)
T COG0209 299 ---P-GIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGGGAIRASNLCSEILQRTKPLSLEQPLGEDASC 374 (651)
T ss_pred ---C-CeeeeeEcHHHHHHHHHHHHHhcCCCeeEecccccCCCCCcccCceeeccccchhhhccccccccccCCCCceee
Confidence 2 23589999999999999999999999999999999666654 567999999999999888 45788999
Q ss_pred ccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHH
Q psy8865 386 NLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAI 465 (749)
Q Consensus 386 NL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~ 465 (749)
||+||||.+++.. + +.|+++|+++||+||||||++.||+|+++++|..+|+||||+|||||+|+++|++|+|+||+
T Consensus 375 NL~siNl~~~~~~---~-~~~~~~v~~~vr~Ld~vid~~~~p~~~~~~~n~~~R~iGlGvmgl~~~La~~~i~y~S~ea~ 450 (651)
T COG0209 375 NLGSINLAKFVKY---G-DGLAELVAVAVRALDNVIDLNPYPVPEAERANAESRAIGLGVMGLADLLAQLGIPYGSEEAL 450 (651)
T ss_pred echhhhHHHHHhc---c-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhhhcCccccchhhHHHHHHhCCCCcCCHHHH
Confidence 9999999999863 2 34999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCC
Q psy8865 466 KFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGM 545 (749)
Q Consensus 466 ~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~ 545 (749)
+|++++||.|+|+|+++|++||+|+|+|+.|++|.|++|.+|.+.... . . .. .+|+.||+++++||+
T Consensus 451 ~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g~~~~~~~~~--------~---~-~~-~~w~~l~~~v~~~G~ 517 (651)
T COG0209 451 KFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRL--------F---G-IT-EDWEKLREDIKKHGL 517 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccccchhhh--------c---c-cc-ccHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999887221 1 1 11 899999999999999
Q ss_pred cccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCC
Q psy8865 546 RNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIP 625 (749)
Q Consensus 546 RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip 625 (749)
|||+++|||||||||+|+|+|+||||+|+++|.|....|.+.++++++.+++..
T Consensus 518 rns~~~aiaPtgsiS~i~~~t~~IeP~~~~~~~r~~~~g~~~~~~~~l~~~~~~-------------------------- 571 (651)
T COG0209 518 RNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFEDLLA-------------------------- 571 (651)
T ss_pred ccccceeeCCccchhHhhCCCCCcCcChhheeeEecccceEEEeCcHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998776543
Q ss_pred hhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeC-CCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccc
Q psy8865 626 DDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-NKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703 (749)
Q Consensus 626 ~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~-~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~~~~~~t~ 703 (749)
.|..||+|+|.++|+|+|++|+|||||||+|||++ +.+.+++.++|++||++||||+||+|+++.++.+++++
T Consensus 572 -----~~~~a~~i~~~~~i~~~a~~q~~iDq~iS~tl~~~~~~~~~d~~~~~~~Aw~~g~K~~yY~~~~~~~~~~~~~~ 645 (651)
T COG0209 572 -----YYGLAYEIDPLWHIDMQAAAQRWIDQGISKTLNLPNTATTKDLNKAYLYAWKLGLKTTYYRRTSQAAQVLTVVL 645 (651)
T ss_pred -----hhhhhhccChHHHHHHHHHhhcccccceeeeecCCCCCCHHHHHHHHHHHHHcCCceEEEecCccccccccccc
Confidence 34459999999999999999999999999999998 57899999999999999999999999999988876643
No 29
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1e-125 Score=1121.05 Aligned_cols=582 Identities=26% Similarity=0.409 Sum_probs=503.4
Q ss_pred CChhhHHHHHHhcccccC-----------CeE-----------------------ee-cHHHHHHHHHhHhhcc-----c
Q psy8865 78 FNYLGLKILYDRYFLHIE-----------GIR-----------------------IE-MPQFFFMRIAMGLSLN-----E 117 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~~-----------~~~-----------------------~E-~pq~~~mRVA~~la~~-----e 117 (749)
|+-.+..++..+|+.+.. |.+ .| +-.++|.|||...+.- .
T Consensus 47 ws~~a~~i~a~kyfr~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~q~~~r~~~~~~~~g~~~gy 126 (1220)
T PRK07562 47 WSQVAADILAQKYFRKAGVPARLKKVEENGVPSFLWRSVPDEEALAALPEEERFGSETSAKQVFDRLAGCWTYWGWKGGY 126 (1220)
T ss_pred HhHHHHHHHHHHHhhhcCCchhhhccccccCchhhcccCcchhhhhcccccccccccccHHHHHHHHHHHHHHHHhhCCc
Confidence 467788889999996630 100 13 4467888888775532 2
Q ss_pred cCcHHHHHHHHH----HHhcCCccccCccccccCc------------------------------ccccccceeeccCCC
Q psy8865 118 SNREKCAIKFYN----LLSSFNFMCSTPTLFNSGT------------------------------IRSQLSSCYLSTVPD 163 (749)
Q Consensus 118 ~~~~~~a~~fY~----~ls~~~~~~atPtl~naGt------------------------------~~~qlsSCfl~~v~D 163 (749)
.+..+.++.||+ +|.++++.|+||+|||.|+ .++|+|||||+.|+|
T Consensus 127 f~~~~da~~f~de~~~~l~~q~~apnSP~wfN~Gl~~~yg~~~~~~~~~~~d~~~~~~~~~~~~y~~pQlsSCFI~~V~D 206 (1220)
T PRK07562 127 FDSEEDARAFYDELRYMLATQMVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPKTGKLTKSKSAYEHPQPHACFIQSVED 206 (1220)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcCCCCcceeeccccccccccCccccccccccccccccccccccCCCCcceEEecccCC
Confidence 345778999999 9999999999999999997 689999999999999
Q ss_pred Chh---hHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCC-CcccceEEeeeC
Q psy8865 164 DLY---GIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239 (749)
Q Consensus 164 sl~---~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~~~yl~~ 239 (749)
||+ |||+++++.|+|+|+|||+|+|||+|||+|++|+| +|+|||+|||||+||.++.+|+||| +||||.|+||++
T Consensus 207 sl~~~~gI~d~~~~~A~l~K~GGGtG~nfS~LR~~Ge~Isg-gG~SSG~vsFmkifD~aa~aIkQGG~tRRGA~mv~Ldv 285 (1220)
T PRK07562 207 DLVNEGGIMDLWVREARLFKYGSGTGSNFSNLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDI 285 (1220)
T ss_pred cccccchHHHHHHHHHHHHhcCCeEeecccccCCCCCcCCC-CCcCCChhhHHHHHHHHHHHHHhCCCCccCceEEEecC
Confidence 995 99999999999999999999999999999999987 7999999999999999999999999 599999999999
Q ss_pred CccCHHHHHHHhhhc-----------------------------Ccccc-------------------------------
Q psy8865 240 WHMDIEEFIELRKNT-----------------------------GDDRR------------------------------- 259 (749)
Q Consensus 240 wH~DI~eFl~lK~~~-----------------------------g~~~~------------------------------- 259 (749)
|||||++||++|++. |+++.
T Consensus 286 dHPDIeeFI~~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~~NpaLk~aI~~Ak~~~vP~~~I~RvI 365 (1220)
T PRK07562 286 DHPDIEEFIDWKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPAKNPALKREIKAAKKALVPENYIKRVI 365 (1220)
T ss_pred CcccHHHHHHhccchhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCccccHHHHHHHHHHHhccCCHHHHHHHH
Confidence 999999999999741 22110
Q ss_pred ---------------------------cccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHH
Q psy8865 260 ---------------------------RTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYEN 312 (749)
Q Consensus 260 ---------------------------r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~ 312 (749)
..+|+|+||+|+|+||++|++|++|.|++|.+
T Consensus 366 ~~A~qg~~~~~f~~yd~~~~~e~y~tv~~qN~N~SV~VtDeFM~aVe~d~~w~L~~p~~--------------------- 424 (1220)
T PRK07562 366 QFARQGYTDIDFPTYDTDWDSEAYLTVSGQNSNNSVRVTDEFLRAVENDGDWNLTARTD--------------------- 424 (1220)
T ss_pred HHhhcccccccccccccccccchhcccccccccceeccCHHHHHHHHCCCCeeeeccCC---------------------
Confidence 12588999999999999999999999999864
Q ss_pred hhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccc
Q psy8865 313 QTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL 392 (749)
Q Consensus 313 ~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL 392 (749)
|+ +.++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|++||||+||+++++. +|||+||||
T Consensus 425 ----gk--v~ktV~AReLw~kI~~aawetGdPgI~F~DtiN~~~~~~~~G~I~aSNPCsEi~lld~~----aCNLaSINL 494 (1220)
T PRK07562 425 ----GK--VAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGPIRASNPCSEYMFLDDT----ACNLASLNL 494 (1220)
T ss_pred ----Cc--eeeEeeHHHHHHHHHHHHHHHCCceEEEehhhhhcCCCccCCeeEeecCcccccCCCCC----cccchhhhH
Confidence 43 47999999999999999999999999999999999999999999999999999998764 699999999
Q ss_pred hhhhccC--CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHH
Q psy8865 393 TLHMKNG--KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470 (749)
Q Consensus 393 ~~~v~~g--~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~ 470 (749)
.+|++++ .||++.|+++|++++++||++||.+.||++++++.++++|+||||+|||||+|+++||||+|+||++++++
T Consensus 495 ~~Fv~~~~~~fD~e~l~~avrl~t~~LDi~id~~~yP~~ei~~~~~~~R~IGLGvmGLadlL~~lGipYdS~EAr~la~~ 574 (1220)
T PRK07562 495 LTFRDEDTKRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIAELSYEFRTLGLGYANIGGLLMTMGIPYDSDEGRAICGA 574 (1220)
T ss_pred HHHhcCCCCccCHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHhcCCCeeehHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 9999865 49999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc------------CCCCc-hhhHHHHH---HHhcccccccCchhhhhHH
Q psy8865 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWD------------QGILP-QDSLKLLE---KERGSKYLKVNMSESLNWK 534 (749)
Q Consensus 471 i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~------------~G~lp-~d~~~~~~---~~r~~~~~~~~~~~~~dW~ 534 (749)
||+.|+++|+++|++||+|+|+||.|++|+|. .|.++ ++.+.... +...............+|+
T Consensus 575 I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~lrv~r~h~~aa~g~~~gy~~~~~~p~~~~~~~~~~~~l~~~a~~~W~ 654 (1220)
T PRK07562 575 LSAIMTGVAYATSAEMAKELGPFPGYEKNADHMLRVIRNHRRAAHGESEGYEGLSVNPVPLDHANCPDQDLVAHAKAAWD 654 (1220)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCcccChhhhhhhhhhhhhhhccccccccccccCcccccccccchhhhccchhhhHH
Confidence 99999999999999999999999999999973 22211 11100000 0000000000112467899
Q ss_pred HHHHHHHHhCCcccceeeccCCccccccccc-cccccccccchhheecC-CCcceeecHHHHHHHHHcCCChHHHHhhhh
Q psy8865 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGV-SASIEPTYRNLHIKSNL-SGEFTEINRYLVKELKKKGLWDESMIANLK 612 (749)
Q Consensus 535 ~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~-s~gieP~~~~~y~r~~~-~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~ 612 (749)
+|++.+++||+|||++++||||||||+|+|| |+||||.|+++|.|+.. .|+|++||+++.++|+++|+|++++.+.+.
T Consensus 655 ~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIEP~fAlv~~kkl~gGg~f~ivN~~l~~~L~~lG~~~~~i~~i~~ 734 (1220)
T PRK07562 655 KALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEA 734 (1220)
T ss_pred HHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcccCccceEEEEeccceeEEEEcHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999888765 569999999999999999999988866665
Q ss_pred h--cCCCcccccCCC-----------------------------------------------------------------
Q psy8865 613 Y--FDGNLSQISRIP----------------------------------------------------------------- 625 (749)
Q Consensus 613 ~--~~Gsvq~i~~ip----------------------------------------------------------------- 625 (749)
| .+||+++++.||
T Consensus 735 ~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~~~fdi~~~fn~~~lg~~f~~~~lg~~~~~~~~~~f~ll~~~g~ 814 (1220)
T PRK07562 735 YAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALKSAFDIKFAFNKWTLGEDFCKDTLGIPAEQLNDPSFDLLEHLGF 814 (1220)
T ss_pred HhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhhhhhhhhhhhcccccchhhhhhcccCcHhhhccccchhhhhccc
Confidence 4 479998887775
Q ss_pred -------------------------hhHHhhccccc--------CCCHHHHHHHHHHHcccccccCcceeeeC-CCCHHH
Q psy8865 626 -------------------------DDLRKIYATAF--------EISPNWIIEAGSVRQKWIDQSQSLNIYIS-NKSGKK 671 (749)
Q Consensus 626 -------------------------~~~k~~y~tA~--------ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~-~~~~~~ 671 (749)
++...+|.+|. +|++++||+|+|+.|||||.+||+|++|+ ++|.+|
T Consensus 815 t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~~g~~g~r~i~~~~Hi~M~aA~Q~fis~aISKTvNmP~~ATveD 894 (1220)
T PRK07562 815 SKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVED 894 (1220)
T ss_pred chhhHHHhhhhcccccccccCcccchhhhhhccccccccccccccCCHHHHHHHHHHhhhhccccccceeeCCCCCCHHH
Confidence 23345788884 89999999999999999999999999998 589999
Q ss_pred HHHHHHHHHHcCCcEEEEeC
Q psy8865 672 LDETYKLAWLRGLKTTYYLR 691 (749)
Q Consensus 672 l~~~~~~Awk~GlKt~YY~r 691 (749)
+.++|++||++|||.+-..|
T Consensus 895 v~~~y~~a~~lG~KaitlYR 914 (1220)
T PRK07562 895 CKNAYMLSWKLALKANALYR 914 (1220)
T ss_pred HHHHHHHHHHhCCcceEEEe
Confidence 99999999999999854444
No 30
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.3e-125 Score=1154.76 Aligned_cols=465 Identities=30% Similarity=0.513 Sum_probs=429.9
Q ss_pred cccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhc-Ccccccccccc
Q psy8865 187 NDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNT-GDDRRRTHDMN 265 (749)
Q Consensus 187 ~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~-g~~~~r~~~~~ 265 (749)
+|||+|||+|++|+|++|.|+||||||++||+++.+|+|||+||||.|+||++|||||++||++|+.+ |+.. .+++|
T Consensus 758 ~~fS~LRp~Gs~I~~t~g~asGpvsfm~lfd~~~~~v~QGG~RRGA~m~yL~~~HPDI~eFI~aK~~~~g~~~--l~~fN 835 (1740)
T PRK08332 758 LNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNV--LSNFN 835 (1740)
T ss_pred ecccccCCCCCcccCCCCCCCChHHHHHHHHHHHHHHHhcCCCcCCeEEEEcCCCccHHHHHHhhhccCCcch--hcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999644 4433 57788
Q ss_pred cccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeE
Q psy8865 266 IAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPW 345 (749)
Q Consensus 266 ~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~ 345 (749)
+++.|+|+||++|++|++|+||+|++ |+ ..++|+||+||.+|++++|+||+||
T Consensus 836 lsv~v~D~FMeaV~~d~~w~L~~P~~-------------------------g~--~~~~v~AreLw~~I~~~a~etGePg 888 (1740)
T PRK08332 836 ISVGIWEDFWEALKEGKKYPLINPRT-------------------------GE--VVKEIDPKSLFEELAYMAWAKADPG 888 (1740)
T ss_pred ccccchHHHHHHHHcCCCeEeecCCC-------------------------Cc--eeeEEcHHHHHHHHHHHHHHhCCCc
Confidence 88888899999999999999999975 32 4689999999999999999999999
Q ss_pred EEecchhhhhCCCCc--cceEeeecccc----------------------------------------------------
Q psy8865 346 ITFKDACNIRSPQQH--VGIIHSSNLCT---------------------------------------------------- 371 (749)
Q Consensus 346 i~f~D~~N~~~p~~~--~g~I~~SNlC~---------------------------------------------------- 371 (749)
|+|+|++|+.||+++ .|+|++||||.
T Consensus 889 ilF~D~iN~~n~~~~~~~g~I~aSNpCVtgdt~v~T~~G~~~~~~l~~~~~~~g~~~~~~~~g~~~~g~~~~~~~e~v~~ 968 (1740)
T PRK08332 889 VIFFDVINRRNVLKEAKGGPIRATNPCVVGDTRILTPEGYIKAEELFSLAKERGKKEAVAVEGIAEEGEPYAYSVEILLP 968 (1740)
T ss_pred EEEhhhhhhhCCCccccCCeEEeecCCcCCCceeecccchHHHHHHHHHHHhcCcceeeeeccccccCCcccccceeecc
Confidence 999999999999887 48999999992
Q ss_pred --------------------------------------------------------------------------------
Q psy8865 372 -------------------------------------------------------------------------------- 371 (749)
Q Consensus 372 -------------------------------------------------------------------------------- 371 (749)
T Consensus 969 g~~~~~~~~~~g~~~~~~~~~~~~~~~~~tG~k~v~rl~T~~G~~i~~T~dH~~lt~~gW~~~~eLk~GD~i~lp~~~~~ 1048 (1740)
T PRK08332 969 GEEEVKYETVHGKALAIADPVAVPAYVWKVGKKKVARVRTKEGYEITATLDHKLMTPEGWKEVGDLKPGDKILLPRFEVE 1048 (1740)
T ss_pred ccccccccccCCcccccccccccccceeecCcceEEEEEecCCcEEEecCCceeeecccCEEHhHcCCCCEEEecCccCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy8865 372 -------------------------------------------------------------------------------- 371 (749)
Q Consensus 372 -------------------------------------------------------------------------------- 371 (749)
T Consensus 1049 ~~~g~~~~~e~~a~LLG~LiGDGsl~~~~k~~~~~~~~~~ee~va~~v~~~l~~~fG~~~~~~r~~~~~~i~~r~~~~~~ 1128 (1740)
T PRK08332 1049 EDFGSESIGEDLAFVLGWFIGDGYLNVNDKRAWFYFNAEKEEEIAWKIREILAKHFGIKAEPHRYGNQIKLGVRGEAYRW 1128 (1740)
T ss_pred cccCccccchHHHHHHHHhhcCceeecCCceeEEEecCcchHHHHHHHHHHHHHHhCCcccccccccceeecccHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy8865 372 -------------------------------------------------------------------------------- 371 (749)
Q Consensus 372 -------------------------------------------------------------------------------- 371 (749)
T Consensus 1129 Lk~l~~~~eKrIPe~vfrl~~~~~~aFLrGLFDaDG~V~~~~~I~lsS~s~~Ll~dVq~LLlrLGI~S~I~~~~~~~~~~ 1208 (1740)
T PRK08332 1129 LESIVKTNEKRVPEIVYRLKPREIAAFLRGLFSADGYVDNDMAIRLTSKSRELLRDVQDLLLLFGILSKIYERPYKSEFK 1208 (1740)
T ss_pred HHHhccccccCCCHHHHhCCHHHHHHHHHHHcccCCccccCceEEEEeCCHHHHHHHHHHHHhCCCeeEEEecccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy8865 372 -------------------------------------------------------------------------------- 371 (749)
Q Consensus 372 -------------------------------------------------------------------------------- 371 (749)
T Consensus 1209 l~d~~gg~k~y~~~~~y~LiIsg~~~~~F~e~IGF~~~K~~rl~l~~~~~~~~~~~V~~ve~~G~E~VYd~t~p~~h~f~ 1288 (1740)
T PRK08332 1209 YTTKDGEERTYRAEGYYELVIANYSRKLFAEKIGFEGYKMEKLSLQKTKIDEPIVTVESVEVLGEEIVYDFTVPEHHSYI 1288 (1740)
T ss_pred ccCCCCcccccccCceEEEEEcchHHHHHHHHhccchhhHHHHhhcccccccceeEEEEeeecCccceeecCCCcccccc
Confidence
Q ss_pred ----------ccccCCCCCcccccccccccchhhhcc---C--CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhh
Q psy8865 372 ----------EITLNTSKNEIGVCNLGSINLTLHMKN---G--KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNL 436 (749)
Q Consensus 372 ----------EI~l~~~~~e~avCNL~SINL~~~v~~---g--~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~ 436 (749)
||+|+ +.++||||||||++||.+ | .|||++|+++|++||||||||||++.||+|+++++++
T Consensus 1289 ~nG~~~~~~GEqpL~----py~sCNLgSINL~~fV~~~~~g~~~fD~e~l~~~V~~avR~LDnVID~~~yPlp~i~~~~~ 1364 (1740)
T PRK08332 1289 SNGFMSHNCGEEPLY----EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTK 1364 (1740)
T ss_pred ccceEecCCCccCCC----CCCeeecHHHHHHHHhcccccCccccCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHhh
Confidence 00000 135999999999999973 3 5999999999999999999999999999999999999
Q ss_pred hcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHH
Q psy8865 437 RHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK 516 (749)
Q Consensus 437 ~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~ 516 (749)
++|+||||+|||||+|+++||||+|+||++|+++||+.|+++|++||++||+|+|+||.|++|+|++|++|++.+..
T Consensus 1365 ~~R~IGLGvmGLad~L~~lGI~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~fe~S~y~~G~l~~~~~~~--- 1441 (1740)
T PRK08332 1365 LTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYEKTEYPKGELPVEGFYH--- 1441 (1740)
T ss_pred hcCCcccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhccccccccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875421
Q ss_pred HhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHH
Q psy8865 517 ERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596 (749)
Q Consensus 517 ~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~ 596 (749)
......+|++|+++|++||+|||+++|||||||||+|+|||+||||+|+++|.|++..|+|.++||+|.+.
T Consensus 1442 ---------~~~~~~~W~~L~e~I~k~GlRNs~ltaIAPTGSiSliag~SsGIEPifA~~y~R~v~~G~~~~~np~~~~~ 1512 (1740)
T PRK08332 1442 ---------PEIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAE 1512 (1740)
T ss_pred ---------chhccccHHHHHHHHHHhCcchheeeccCCCcchhhhcCCCCccccchhheeEEeccCceEEEecHHHHHH
Confidence 11123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC-CCHHHHHHH
Q psy8865 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN-KSGKKLDET 675 (749)
Q Consensus 597 L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-~~~~~l~~~ 675 (749)
|+++|+|+++++.+|....|++|+++.+|++++.+|+||+||+|.|||+|||++|||||||||+|+|+++ .+.+++.++
T Consensus 1513 l~~~g~~~~e~~~~I~~~~gsvq~~~~lpe~~~~~F~TA~DI~~~~hI~mqAa~Qk~VDqaISKTiNlP~dat~eDv~~i 1592 (1740)
T PRK08332 1513 LKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHILAQANIQMWLTDSASKTINMINEATVEDVKAA 1592 (1740)
T ss_pred HHHcCCCcHHHHHHHHHhCCCccCcccCChhHhhhcccHhcCCHHHHHHHHHHHhhhccccccceeecCCCCCHHHHHHH
Confidence 9999999999999998888999999999999999999999999999999999999999999999999985 799999999
Q ss_pred HHHHHHcCCcEEEEeCCCccc
Q psy8865 676 YKLAWLRGLKTTYYLRSISAN 696 (749)
Q Consensus 676 ~~~Awk~GlKt~YY~rs~~~~ 696 (749)
|++||++|||+++|+|..+..
T Consensus 1593 Y~~Awk~GlKGiTvYRdgs~~ 1613 (1740)
T PRK08332 1593 YLIAHFLGCKGVTVYRDGSLS 1613 (1740)
T ss_pred HHHHHHcCCCEEEEEcCCCcc
Confidence 999999999998888876654
No 31
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=100.00 E-value=1.4e-84 Score=751.73 Aligned_cols=492 Identities=20% Similarity=0.180 Sum_probs=404.6
Q ss_pred HHHhccccc-CCeEeecHHHHHHHHHhHhhcccc------------CcHHHHHHHHHHHhcCCccccCccccccCcc---
Q psy8865 86 LYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES------------NREKCAIKFYNLLSSFNFMCSTPTLFNSGTI--- 149 (749)
Q Consensus 86 l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~------------~~~~~a~~fY~~ls~~~~~~atPtl~naGt~--- 149 (749)
++++|.... +|++ |+-++...||-.+...-.. ...+.++++|+++..++++||+++|+-+||.
T Consensus 5 ~~RTYsR~~~~g~r-E~W~etv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~k~lPsGR~Lw~~Gt~~~~ 83 (658)
T cd01676 5 YYRTYSRPKEEGQN-ENWDQTVERVVEGTFELWERHLGNPLRWLNEKAEEEAEELRSLIFELKALPPGRGLWLGGTDYSR 83 (658)
T ss_pred EEEeccccCCCCCc-cChHHHHHHHHhcchhhchhhccccchhhhhhhhHHHHHHHHHHHhcccCCCccchhhcCchhhh
Confidence 455676443 5655 9999999998777443221 1256788999999999999999999999975
Q ss_pred -cc--ccccee---------------------------------------------------------------------
Q psy8865 150 -RS--QLSSCY--------------------------------------------------------------------- 157 (749)
Q Consensus 150 -~~--qlsSCf--------------------------------------------------------------------- 157 (749)
+. .+-+|.
T Consensus 84 ~~~~~~~~NC~f~~~~~~~~~f~~~~~llm~G~GvG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (658)
T cd01676 84 QRRFASLNNCAFVSTEDVVYPFVFLMDLLMQGCGVGFDTAGSNISQIPRPLQEIKVQRVNRTEKGGIQNNVETYDPTQHT 163 (658)
T ss_pred cccccccccceeeccccchhhHHHHHHHHhcCCcCCeEecccchhhCCCcccccceeeccccccccccccceeeccCCce
Confidence 11 122332
Q ss_pred -eccCCCChhhHHHHHHHHHHHHh-hcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHH----------------
Q psy8865 158 -LSTVPDDLYGIFESIKENALLSK-YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDV---------------- 219 (749)
Q Consensus 158 -l~~v~Dsl~~I~~~~~~~a~lsk-~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~---------------- 219 (749)
...|+||++|+.+++.....+.. ..-++++|||.|||+|++|||++|+||||+||+++|+.+
T Consensus 164 ~~~~v~Ds~egw~~~~~~l~~~~~~~~~~~~~d~S~iRP~G~~lkg~gG~asGp~~~~~~~~~~~~iL~~~~G~~L~~id 243 (658)
T cd01676 164 WIIKVPDSREGWVKSVQLLLDLYFNPAQTLIFDYSDIRPAGERLKGFGGIASGPEPLKKLHKAIAAILNDRSGKPLTSVD 243 (658)
T ss_pred eEEEcCCCHHHHHHHHHHHHHhcccCCCceEEecccCCCCCCcccCCCCCCCCcHHHHHHHHHHHHHHhhhcccccchhH
Confidence 23478999999888875554432 233889999999999999999999999999999999885
Q ss_pred --------HHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCC
Q psy8865 220 --------AVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291 (749)
Q Consensus 220 --------~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~ 291 (749)
+.+|.|||.||||.|. ++||||++||++|++.+...+ .+|-+..++.
T Consensus 244 ~~di~n~~~~~v~~Gg~RR~A~M~---~~HpDi~eFi~aK~~~~~~~n----------------------~~~~~~~n~s 298 (658)
T cd01676 244 IVDLMNLIGVCVVSGNVRRSAEIA---FGQPEDEDFADLKQYQWNPGR----------------------REHGWASNNS 298 (658)
T ss_pred HHHHHhhhhcEEeecCcccceecC---CCCccHHHHHHhcccCCcccc----------------------chhheecccc
Confidence 5689999999998886 899999999999986543221 1122222221
Q ss_pred CCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCC------CccceEe
Q psy8865 292 VPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ------QHVGIIH 365 (749)
Q Consensus 292 ~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~------~~~g~I~ 365 (749)
...++++|+++|.+|++++|+||+|||+|+|++|+++|+ .+.|.|+
T Consensus 299 ----------------------------~~~~~~~ar~~~~~I~~~~~~tGEPGi~f~D~~N~~~~~~~~~~~~~~g~I~ 350 (658)
T cd01676 299 ----------------------------VVFESKPDRLEYSFACMLIRGNGEPGIAWLDNMKAYARMVLLTTPYHDLRAK 350 (658)
T ss_pred ----------------------------hheeehhhHHHHHHHHHHHHHhCCCcEEEHHHHHhhCccccccccccCCeeE
Confidence 135788999999999999999999999999999999986 2458999
Q ss_pred eeccccccccCCCCCcccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCccccc
Q psy8865 366 SSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGI 445 (749)
Q Consensus 366 ~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv 445 (749)
+||||+||+|++++ +|||+||||.+|+. |+++|+++|++|||||||||+ +.||+|+++++++++|+||||+
T Consensus 351 ~TNPCgEi~L~~~~----~CNLgSINL~~~v~----d~~~l~~~v~~avRflD~Vi~-~~~p~~~~~~~~~~~R~IGlGv 421 (658)
T cd01676 351 GGNPCGEISLESYE----LCNLVEVFPLKHEG----DLEDLQETLYLAGRYAKTVTL-LPLHWEITNEIILRNRRIGVSM 421 (658)
T ss_pred eccccccccCCCCC----ceechhccHHhhcc----cHHHHHHHHHHHHHHHHHhhc-ccCchHHHHHHHHhcccceeee
Confidence 99999999999885 79999999999984 789999999999999999998 5699999999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhccccccc
Q psy8865 446 MGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKV 525 (749)
Q Consensus 446 ~Glad~L~~lgi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~ 525 (749)
|||||+|+++|+||+++++.++.+ .++..+.++|.++|+|+|.
T Consensus 422 mGlaD~L~~lgi~~~~~~~~~~~~----~~~~~~~~~s~ela~e~G~--------------------------------- 464 (658)
T cd01676 422 SGIADFIVRAGGDLTLHDLKRWRN----IGYEAVYQYDERLSKWLGI--------------------------------- 464 (658)
T ss_pred ecHHHHHHHcCCCccHHHHHHHHH----HHHHHHHHHHHHHHHHhCC---------------------------------
Confidence 999999999999999888765544 4555566777888887762
Q ss_pred CchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChH
Q psy8865 526 NMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDE 605 (749)
Q Consensus 526 ~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~ 605 (749)
.||+++||||||||+|+|+|||+||||+|+++|+|+++.+ .|+.+++.|++.|+|.+
T Consensus 465 -------------------~rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~~pl~~~l~~~G~~~~ 521 (658)
T cd01676 465 -------------------PLSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KHDPLAPALIAAGYHVE 521 (658)
T ss_pred -------------------ccccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cCcHHHHHHHHcCCCcH
Confidence 1678899999999999999999999999999999998855 48888999999999977
Q ss_pred HHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcc-cccccCcceeeeCC-CCHHHHHHHHHHHHHcC
Q psy8865 606 SMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK-WIDQSQSLNIYISN-KSGKKLDETYKLAWLRG 683 (749)
Q Consensus 606 ~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~-~iDqs~S~nl~~~~-~~~~~l~~~~~~Awk~G 683 (749)
+.... +.+.+..||++.+.+|+||+||+|.+||+|||++|+ |+||+||+|+++++ ++.++|.++|.++|. |
T Consensus 522 ~~~~~------~~~~l~~iP~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~~~dV~~~l~~~~~-~ 594 (658)
T cd01676 522 PDIYD------PTSVLVEFPVKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPEGPALIQALQQFQY-Q 594 (658)
T ss_pred HHHhc------cCCCcccCCHHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCCHHHHHHHHHHhhc-C
Confidence 64332 346789999999999999999999999999999999 59999999999985 599999999999955 9
Q ss_pred CcEE--EEeCCCccc--ccccccccccc
Q psy8865 684 LKTT--YYLRSISAN--YAKKSNFEMGI 707 (749)
Q Consensus 684 lKt~--YY~rs~~~~--~~~~~t~~~~~ 707 (749)
||++ |..++...+ ++....+++..
T Consensus 595 ~KG~t~l~~~d~~~~~~q~P~E~I~ke~ 622 (658)
T cd01676 595 YKSVSLLPRFDTTKNAAQMPFEPITKER 622 (658)
T ss_pred CeEEEEeecCCcccCcccCCccccCHHH
Confidence 9984 433345544 77777777543
No 32
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.
Probab=100.00 E-value=4.7e-71 Score=640.15 Aligned_cols=488 Identities=22% Similarity=0.243 Sum_probs=386.9
Q ss_pred CChhhHHHHHHhcccc-cCCeEeecHHHHHHHHHhH-hhccc-----------cCcHHHHHHHHHHHhcCCccccCcccc
Q psy8865 78 FNYLGLKILYDRYFLH-IEGIRIEMPQFFFMRIAMG-LSLNE-----------SNREKCAIKFYNLLSSFNFMCSTPTLF 144 (749)
Q Consensus 78 f~y~g~~~l~~rYllk-~~~~~~E~pq~~~mRVA~~-la~~e-----------~~~~~~a~~fY~~ls~~~~~~atPtl~ 144 (749)
+.-+|..+++++|... .++.+-|+-.+...||-.+ +...+ ....+.+++.|+++..++++||+++|+
T Consensus 8 ~~~~g~~vy~Rtysr~~~~~~r~E~W~eTv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~i~~~k~lPsGR~LW 87 (713)
T TIGR02505 8 WGKTALVTYKRTYARWLPEKGRSENWDETVERVVSGNRNLWPRLQDRPLLELQQSLTEEAERLYRLIYELKALPSGRNLW 87 (713)
T ss_pred cccccceeEeecccccCCCCCCCCCchhheeeeecCccccchhhhccchhhhhhhhHHHHHHHHHHHHhcccCCCccchh
Confidence 4455666777777743 3445567777777775443 22111 012467789999999999999999999
Q ss_pred ccCcc---cc--cccceee-------------------------------------------------------------
Q psy8865 145 NSGTI---RS--QLSSCYL------------------------------------------------------------- 158 (749)
Q Consensus 145 naGt~---~~--qlsSCfl------------------------------------------------------------- 158 (749)
-+||. +. .+-+|..
T Consensus 88 ~gGt~~~~~~~~~~~NC~f~~~~~~~~F~~~~~llM~G~GVGf~~~~~~i~~lp~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (713)
T TIGR02505 88 IGGTDYQRRTEDSLFNCWFTAIRPQKPFSFLFDLLMKGCGVGFSVARSNISQIPRVDQEIKVQLVVDETSESYDASVEVG 167 (713)
T ss_pred hcCchhhhccchhhccceecccccccCHHHHHHHHhcCCcCCEEecccchhhCCCccccceeeeecccCCCChhhhhhhc
Confidence 99963 11 1333321
Q ss_pred ----------ccCCCChhhHHHHHHHHHHHHhhcC------CcccccccccCCCCCcCCCCCcccCcccHHHHH------
Q psy8865 159 ----------STVPDDLYGIFESIKENALLSKYAG------GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVV------ 216 (749)
Q Consensus 159 ----------~~v~Dsl~~I~~~~~~~a~lsk~gG------GiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~------ 216 (749)
+.|+||.+|+.++++....++..+. .||+|||+|||+|++|+|++|+|||||||+++|
T Consensus 168 ~~~~~~~~~~~~v~DSreGWv~s~~~ll~~~~~~~~~~~~~~v~~dfS~iRP~Ga~lkg~GG~ASGPvsl~~l~~~i~~i 247 (713)
T TIGR02505 168 AVSKNEDVQDVDLPDTREGWVLANALLIDLHFAQTNADRKQKLVLDLSDIRPAGAELKGFGGTASGPVPLAKMLTDVAEI 247 (713)
T ss_pred ccccCCCceEEEcCCcHHHHHHHHHHHHHHhcCccccccCCceeeeccccCCCCCcccCCCCCCCCcHHHHHHHHHHHHH
Confidence 1267999999999998777764433 469999999999999999999999999999988
Q ss_pred ------------------HHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHH
Q psy8865 217 ------------------NDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRV 278 (749)
Q Consensus 217 ------------------~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv 278 (749)
|.++.+|.|||+||||.|..|+++||||++|+..|+..|. ...++|+||.+.|.||..
T Consensus 248 L~~~~G~~Lt~id~~di~~~~~~~Vv~GgvRRgA~M~~l~~dhpdi~~fi~aK~~~~~---~~~~~N~SV~v~d~f~~~- 323 (713)
T TIGR02505 248 LSNKAGGRLTAVDAADICNLIGKAVVAGNVRRSAEMALFSNDDPEFESFKQAKEKLMH---HRWASNNSVAVDSAFSGL- 323 (713)
T ss_pred HhhhccccccchhHHHHHHHHhheeeecCccccceeeccCCCChHHHHHHhccccccc---ccccccceeEechhHHHH-
Confidence 5678899999999999999999999999999999986542 236899999999999711
Q ss_pred hcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecch-------
Q psy8865 279 IKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA------- 351 (749)
Q Consensus 279 ~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~------- 351 (749)
. ++...++++|+|+++|.|+
T Consensus 324 ---------~--------------------------------------------~~~~~~~~~gePg~~fid~~~~~~~~ 350 (713)
T TIGR02505 324 ---------A--------------------------------------------RSAADILENGEPGQVNLDLSKSEGRI 350 (713)
T ss_pred ---------h--------------------------------------------hhhccccccCCcchhhHhhhhccccc
Confidence 0 1112335899999999999
Q ss_pred hhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHH
Q psy8865 352 CNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKA 431 (749)
Q Consensus 352 ~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~ 431 (749)
+|..++..+.|.|.+||||+||+|++++ +|||+||||.+|+.+ .++|++++++++|||||||+ +.||+|++
T Consensus 351 in~~~~~~~~~~I~~tNPCgEi~L~~~~----~CNL~sINL~~~~~~----~~~l~~~~~~avr~Ld~vi~-~~~pl~~~ 421 (713)
T TIGR02505 351 VNGRYQAGEDGDVEGTNPCGEILLANGE----PCNLFEVNLLAFEED----GWGLQRAFALAARYAKRVTF-SPYDDEIS 421 (713)
T ss_pred cccccccccCCceeecCCCccccCCCCC----ceechhccHHhhccc----HHHHHHHHHHHHHHHHHHHh-ccCChHHH
Confidence 5777888888999999999999999875 799999999999853 37899999999999999996 56999999
Q ss_pred HHHhhhcCCcccccchHHHHHHHcCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy8865 432 KYSNLRHRPVGLGIMGFQDCLHIMKI-------------PYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDG 498 (749)
Q Consensus 432 ~~~n~~~R~IGlGv~Glad~L~~lgi-------------~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~ 498 (749)
+++++++|+||||+|||||+|+++|+ +|+|.++...+.++++.++..+.++|.++|+|+|.
T Consensus 422 ~~~~~~~R~IGlGv~Glad~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~s~elg~------ 495 (713)
T TIGR02505 422 REIIQKNRRIGVSMSGIQDFLLLRGGTGFKDDFDPETHEAIKVRVYDKRAAKFLDRMYKIVVKAAQDYSKELGC------ 495 (713)
T ss_pred HHHHHhcCCceeehhhHHHHHHHcCCcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999 77777777777777788888888888899988762
Q ss_pred CcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhh
Q psy8865 499 SLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHI 578 (749)
Q Consensus 499 S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~ 578 (749)
.||+++|+||||||+|+|+|||+||||+|+++|+
T Consensus 496 ----------------------------------------------~r~~~~TTIaPTGTiS~laG~S~GIeP~~A~~y~ 529 (713)
T TIGR02505 496 ----------------------------------------------PEPIKHTTVKPSGTISKLAGASEGIHPPYGAYLI 529 (713)
T ss_pred ----------------------------------------------CCccceeeeCCccchHHhcCCCCccCcchhhhee
Confidence 2688999999999999999999999999999999
Q ss_pred eecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCccc----ccCCChhH----Hhhccccc--CCCHHHHHHHHH
Q psy8865 579 KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQ----ISRIPDDL----RKIYATAF--EISPNWIIEAGS 648 (749)
Q Consensus 579 r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~----i~~ip~~~----k~~y~tA~--ei~~~~~i~~~a 648 (749)
|++. | .+|++|.+.|++.|++.+....+. .-.|...+ +-.+|... ..-..+|. +|++.+|++++|
T Consensus 530 Rri~---~-~~ndpl~~~l~~~Gy~~~p~~~~~-~~~~~~~~~~~~~ve~p~~~~~~~~~~~~~a~~~diS~~~ql~~qa 604 (713)
T TIGR02505 530 RRIT---F-SKSDPLAPALKACGYTVEADQYDK-NEQGRLPPCKTTLVEFPIKAVGADNPNIAEVGINTVSAAAQFAFYA 604 (713)
T ss_pred eeee---e-ecCcHHHHHHHHcCCCCCcccccc-ccccccccccceeEEeeecccccCCCCCcccccccCCHHHHHHHHH
Confidence 9983 3 589999999999999875321110 00011110 11233221 01123556 999999999999
Q ss_pred HHcc-cccccCcceeeeCCCCHHHHHHHHHHHHHcCCcEEEEe
Q psy8865 649 VRQK-WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYL 690 (749)
Q Consensus 649 ~~Q~-~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~YY~ 690 (749)
..|+ |+|+++|+|+++++...++|.+++.++|+.- ..|++
T Consensus 605 ~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~--~~~~~ 645 (713)
T TIGR02505 605 FLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS--EGYFS 645 (713)
T ss_pred HHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh--ccchh
Confidence 9999 8999999999998766999999999999843 55554
No 33
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=100.00 E-value=1.6e-49 Score=442.02 Aligned_cols=364 Identities=22% Similarity=0.220 Sum_probs=327.5
Q ss_pred HHHHHHHHhcCCccccCccccccCcccccccceeeccCCCCh---------------hhHHHHHHHHHHHHhhc--CCcc
Q psy8865 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDL---------------YGIFESIKENALLSKYA--GGLG 186 (749)
Q Consensus 124 a~~fY~~ls~~~~~~atPtl~naGt~~~qlsSCfl~~v~Dsl---------------~~I~~~~~~~a~lsk~g--GGiG 186 (749)
+++||++++++++.+++|+ .+++|||+..++|++ ++|...+...+.+++.+ ||+|
T Consensus 1 ~~~~~~~~~~g~~~~~~~~--------~~~~~C~~~~~~d~l~~g~~~~~~p~~~~~eai~~~~~~~~~~~~~~~~ggv~ 72 (401)
T cd00576 1 AERIYEAVKSGVITVGRPD--------LPFTGCVLVDYGDSLDPGIKGVNETAKSINEAIQKTYQIIALAASNQNGGGVS 72 (401)
T ss_pred CHHHHHHHHcCccccCCcc--------cccCceEEEEhHHHHHHhhhhcCCCccCHHHHHHHHHHHHHHHHHhccCCccC
Confidence 3689999999999999997 478999999999999 88888888888877776 9999
Q ss_pred ccc--ccccCCCCCcCC-CCCcccCcccHHHHHHHHHHHhhcCCCcccceEEeeeCCc-----cCHHHHHHHhhhcCccc
Q psy8865 187 NDW--TQVRSLGSPIKG-TNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWH-----MDIEEFIELRKNTGDDR 258 (749)
Q Consensus 187 ~~~--s~iR~~Gs~I~g-~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH-----~DI~eFl~lK~~~g~~~ 258 (749)
++. +.+||.|+++++ .++++.|++++|+.|+..+..+.|+|.|+|+.+++++.|| +|+++||++|.+.+.+.
T Consensus 73 ~~~~d~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (401)
T cd00576 73 FARASSILSPYGSRDYAKGSGTETDAVEAADAFNLALKEVGQGNGRTGAATGFIGGVHKGKGDKISQEFLNLALANGGEG 152 (401)
T ss_pred CchhhhhhhHHHHhhhhcCCCChHHHHHHHHHHHHHHhhhhhcCCCCceEEEEECCCCccccCHHHHHHHHHHHhcCCCC
Confidence 999 999999999987 5788999999999999999999999999999999999999 89999999999887776
Q ss_pred ccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHH
Q psy8865 259 RRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSML 338 (749)
Q Consensus 259 ~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~ 338 (749)
.+....+++|.+++.|+.+ .++|+++|+++++++
T Consensus 153 ~~~~~p~~sv~~~~~~~~~----------------------------------------------~~~~~~l~~~~~~~~ 186 (401)
T cd00576 153 IPLNFPNLSVRVSSDKPGI----------------------------------------------LVKAVELKQLIAEEA 186 (401)
T ss_pred ccCCCCcEEEEeecCCCCc----------------------------------------------cccHHHHHHHHHHHH
Confidence 6777888888776665421 257899999999999
Q ss_pred HhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhhhccC-----CCChHHHHHHHHHH
Q psy8865 339 FETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-----KLDPIKLKKTIRIA 413 (749)
Q Consensus 339 ~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~g-----~~D~~~l~~~v~~a 413 (749)
+++|.|+++|. .+|||+||||++++... .++++.|+++++++
T Consensus 187 ~~~g~P~~~n~---------------------------------~~~~l~siNL~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (401)
T cd00576 187 RKTGSPGIFND---------------------------------ELCNLVSLNLARIMEKAINGSMDVVLEELEELAFLA 233 (401)
T ss_pred HHhCCCCEEEc---------------------------------cccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999987 36999999999998731 35678999999999
Q ss_pred HHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy8865 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYS-SKEAIKFADQSMEMICYYAYYASTELAEEKGR 492 (749)
Q Consensus 414 vr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~-S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~ 492 (749)
+|+||++++...+++|++++.+.++|++|||++|+|+++.+++++|. |++|.+++.+|++.|++.+.++|.+
T Consensus 234 ~r~l~~~~~~~~~~~~~~~~~~~~~r~~giG~~Gla~~~~~l~~~~~~~~~a~~~~~~i~~~~~~~~~~~s~~------- 306 (401)
T cd00576 234 VRALDCVIDSHDERIPTIELGGDERRTVGLGIAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLVKATNE------- 306 (401)
T ss_pred HHHHHHHHHHccCCCHHHHhCccCCccccccHhHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 99999999999999999999889999999999999999999999999 9999999999999999999877643
Q ss_pred CCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeeccCCcccccccccccccccc
Q psy8865 493 YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPT 572 (749)
Q Consensus 493 ~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~ 572 (749)
+||+.+++++|++|+|.+.++|+||+|.
T Consensus 307 ----------------------------------------------------~~~~~~~~~~P~~s~~~~~~~s~gi~p~ 334 (401)
T cd00576 307 ----------------------------------------------------RGFNFLLGLSPSESNSSGAPATNGVSPS 334 (401)
T ss_pred ----------------------------------------------------cCCccccceeecccccCCCCCCCCcCCc
Confidence 3688899999999999999999999999
Q ss_pred ccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcc
Q psy8865 573 YRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652 (749)
Q Consensus 573 ~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~ 652 (749)
++++|+ +++-+++|.++|+++|.+|+
T Consensus 335 ~~~~~~------------------------------------------------------~~~~~~~~~~~i~~~a~~~~ 360 (401)
T cd00576 335 RGXIAI------------------------------------------------------VLNGDIGPEESLASVAILQF 360 (401)
T ss_pred cccccc------------------------------------------------------cccccCCHHHHHHHhhcCcc
Confidence 998876 12346899999999999999
Q ss_pred cccccCcceeeeCCC-C-HHHHHHHHHHHHHcCCcEE
Q psy8865 653 WIDQSQSLNIYISNK-S-GKKLDETYKLAWLRGLKTT 687 (749)
Q Consensus 653 ~iDqs~S~nl~~~~~-~-~~~l~~~~~~Awk~GlKt~ 687 (749)
|+||++|+|+++++. . .++|.+++..||+.|+|++
T Consensus 361 ~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i 397 (401)
T cd00576 361 YADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHV 397 (401)
T ss_pred cccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeE
Confidence 999999999999853 3 8999999999999999985
No 34
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=99.79 E-value=5.4e-20 Score=161.24 Aligned_cols=75 Identities=48% Similarity=0.743 Sum_probs=65.9
Q ss_pred CCChhhHHHHHHhccccc-CCeEeecHHHHHHHHHhHhhcccc------CcHHHHHHHHHHHhcCCccccCccccccCcc
Q psy8865 77 QFNYLGLKILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES------NREKCAIKFYNLLSSFNFMCSTPTLFNSGTI 149 (749)
Q Consensus 77 ~f~y~g~~~l~~rYllk~-~~~~~E~pq~~~mRVA~~la~~e~------~~~~~a~~fY~~ls~~~~~~atPtl~naGt~ 149 (749)
.|+|+|+++|++|||+|+ +|+++|+||++|||||+++|..|. ++.+++++||++|++++|+||||||+||||+
T Consensus 2 ~~~~~a~~~l~~rYl~k~~~g~~~Etpq~~~~RVA~~la~~e~~y~~~~~~~~~~~~fy~~l~~~~f~patP~l~naGt~ 81 (83)
T PF00317_consen 2 LLSYNAAKVLYDRYLLKDEDGKVIETPQEMFMRVAMALASAEPKYDDAEDRMEWAEEFYDLLSNQKFIPATPTLSNAGTK 81 (83)
T ss_dssp GSSHHHHHHHHHHTS-BETTSCB--SHHHHHHHHHHHHHTCCGG-THCCTHHHHHHHHHHHHHTTSEEE-HHHHHHTTSS
T ss_pred CCCHHHHHHHHHhhCccCCCcCEeeCHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHcCCeecCCHHHhcCCCC
Confidence 689999999999999998 578999999999999999999874 6789999999999999999999999999998
Q ss_pred cc
Q psy8865 150 RS 151 (749)
Q Consensus 150 ~~ 151 (749)
++
T Consensus 82 ~g 83 (83)
T PF00317_consen 82 RG 83 (83)
T ss_dssp S-
T ss_pred CC
Confidence 75
No 35
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=97.58 E-value=0.0036 Score=73.58 Aligned_cols=250 Identities=21% Similarity=0.233 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccC-----------CCCCcccccccccccchhh
Q psy8865 327 ALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLN-----------TSKNEIGVCNLGSINLTLH 395 (749)
Q Consensus 327 Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~-----------~~~~e~avCNL~SINL~~~ 395 (749)
-.++++.++++..++|.|++.|-+..-. ..|.+. --|+-..+. ....-++...+.+|||++.
T Consensus 228 ~~d~~~~~~~~~~k~~~p~f~n~~~~~~-----~~~~~~--~mcCR~~l~~~~~~~~~~~~~~~~~~Gs~~vvTiNLpRi 300 (555)
T cd01675 228 NYDLKELAFECAAKRGYPYFLNFDNSDN-----VPGDVR--AMGCRLFLDKNELKRGGGLEGSGDGTGNIGVVTINLPRI 300 (555)
T ss_pred chHHHHHHHHHHHHHCCCCccccccccc-----cCCCcc--cccCccccchhhhcccCCCCccCcccceeeeEEechHHH
Confidence 4578889999999999999987665211 112121 234432222 1222244556679999998
Q ss_pred hccCCCC----hHHHHHHHHHHHHHHHHHhh-------ccCCcHHHHHHHh------hhcCCcccccchHHHHHHHc-CC
Q psy8865 396 MKNGKLD----PIKLKKTIRIAMRMLDNVID-------INYYAVKKAKYSN------LRHRPVGLGIMGFQDCLHIM-KI 457 (749)
Q Consensus 396 v~~g~~D----~~~l~~~v~~avr~LD~vId-------~~~yp~~~~~~~n------~~~R~IGlGv~Glad~L~~l-gi 457 (749)
....+=| |+.|.+.+.++.+.|+.-++ ...+|+-...... ..+-..-||+.||++++..+ |-
T Consensus 301 a~~a~~d~~~F~~~L~~~l~l~~~~l~~r~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~tiG~iGL~Ea~~~l~g~ 380 (555)
T cd01675 301 AYEARGDEEKFFELLDEYLELAKDALEIRRKRLKEALARGLPPLYQEGLGGGKLLFILKRHTLTIGFIGLNEAAEALTGK 380 (555)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHcCcccccceecCCCeEEeEEEehHHHHHHHhcCC
Confidence 7532223 34667777777765553332 2445654443322 34455779999999988664 44
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHH-
Q psy8865 458 PYS-SKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK- 535 (749)
Q Consensus 458 ~y~-S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~- 535 (749)
... +++|.+|+.+|+++|...+-+.+ +|.|---+.+.+ |-+... ..
T Consensus 381 ~~~~~~~~~~f~~~il~~m~~~~~~~~----~e~g~~~~l~~t-------PaEs~~---------------------~rf 428 (555)
T cd01675 381 GIGESEEAREFGIRILEHIRERADEFK----EETGLLYSVEAT-------PAESLA---------------------YRF 428 (555)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEEc-------ccchHH---------------------HHH
Confidence 544 99999999999999998887666 444521111111 111000 11
Q ss_pred HHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcC
Q psy8865 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFD 615 (749)
Q Consensus 536 Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~ 615 (749)
.+.+-+++|- .+-|++. .|++.|-+
T Consensus 429 a~~D~~~~g~---------------i~~g~~d--~~yyTNS~-------------------------------------- 453 (555)
T cd01675 429 AKKDRKKYGD---------------IIPGVTD--KPYYTNSF-------------------------------------- 453 (555)
T ss_pred HHHHHHHcCc---------------cCCCCCC--CCCCCCCE--------------------------------------
Confidence 1233445661 0122221 12222210
Q ss_pred CCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC--CCHHHHHHHHHHHHHcCCc
Q psy8865 616 GNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN--KSGKKLDETYKLAWLRGLK 685 (749)
Q Consensus 616 Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~--~~~~~l~~~~~~Awk~GlK 685 (749)
.+| --.++++.+.|+..+..|++.+-+...-+++++ ++++.+.++...|.+.|+.
T Consensus 454 -------hip--------v~~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~ 510 (555)
T cd01675 454 -------HVP--------VYEDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVI 510 (555)
T ss_pred -------Eee--------CCCCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCc
Confidence 011 112467888999999999999999999999985 5889999999999998753
No 36
>PRK10977 hypothetical protein; Provisional
Probab=97.51 E-value=0.0051 Score=71.15 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=91.2
Q ss_pred EEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCC-CccceEeeeccccccccCCCCCcccccccc--cccchhhhccC
Q psy8865 323 KKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ-QHVGIIHSSNLCTEITLNTSKNEIGVCNLG--SINLTLHMKNG 399 (749)
Q Consensus 323 ~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~-~~~g~I~~SNlC~EI~l~~~~~e~avCNL~--SINL~~~v~~g 399 (749)
+.++-.+++++.+++..++|.|.+.+ |.++...-. ...|.+ =|.|.. +. +.||++ +|||++.-...
T Consensus 187 ~~~tp~d~l~~A~e~~~~~g~P~f~N-d~~~i~~~~a~~ygi~----gC~~~l-~~-----g~GsigvVTINLpRIA~~a 255 (509)
T PRK10977 187 PEITPDDLLLLAAKNICECSKPHIAN-HPVHDKDFTKGGYGIV----SCYNSL-PL-----GGGAYTLVRLNLKEVAKRA 255 (509)
T ss_pred CCCCCHHHHHHHHHHHhccCCCceec-CHhHHHhhcccCCcee----eeeccC-CC-----CcCCceeEEeeHHHHHHHC
Confidence 34445899999999999999998887 554433221 234544 244443 32 246654 89999876422
Q ss_pred C--CC-h-HHHHHHHHHHHHHHHHHh----h-ccCCcHHHHHHHh--hhcCCc-ccccchHHHHHHHc----CCC--CC-
Q psy8865 400 K--LD-P-IKLKKTIRIAMRMLDNVI----D-INYYAVKKAKYSN--LRHRPV-GLGIMGFQDCLHIM----KIP--YS- 460 (749)
Q Consensus 400 ~--~D-~-~~l~~~v~~avr~LD~vI----d-~~~yp~~~~~~~n--~~~R~I-GlGv~Glad~L~~l----gi~--y~- 460 (749)
+ -| | +.|.+.+.++...|+.=+ + .+.||++-..+.- ...|=. -+|+.|||+++..+ |.. |+
T Consensus 256 ~~~e~F~~~~L~~~~~l~~e~l~~R~~~l~e~~~~~~~~fL~~eg~~~~d~f~~tiGiiGLaEav~~l~g~~g~~~~~g~ 335 (509)
T PRK10977 256 ESVDDFFDNVLPHYCQQMIEIIDARIRFLVEESNFFESSFLVKEGLIDPERFTPMFGIYGLAEAVNLLLEKEGLAARYGK 335 (509)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHhhcCCccccccccCccHhHHHHHHHHHhcCCCcccCcCC
Confidence 1 11 2 256777888888777632 2 2457744321110 112222 59999999998887 333 43
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy8865 461 SKEAIKFADQSMEMICYY 478 (749)
Q Consensus 461 S~ea~~l~~~i~e~i~~~ 478 (749)
|+||.+|+.+|.+.|...
T Consensus 336 seea~~l~~~Il~~m~~~ 353 (509)
T PRK10977 336 DEAANELGYRISAQLAEI 353 (509)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999999843
No 37
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=97.47 E-value=0.0071 Score=71.40 Aligned_cols=248 Identities=19% Similarity=0.180 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCC------Ccccccc--cccccchhhhccCC
Q psy8865 329 YLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSK------NEIGVCN--LGSINLTLHMKNGK 400 (749)
Q Consensus 329 ~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~------~e~avCN--L~SINL~~~v~~g~ 400 (749)
++++.++++..++|.|++.+-|+.-.. | |.+ ++--|+-..+.... ......| +.+|||++.....+
T Consensus 233 d~~~~a~~~~ak~~~P~f~n~~~~~~~-~----~~~-~~~MgCR~~l~~~~~~~~~~~~~~~Gn~gvvTiNLpRiA~~a~ 306 (579)
T TIGR02487 233 DLFELAFECAAKRGYPYFLNLDPEDNV-K----EDV-RYPMGCRTFLSPNENGDGEESYIGRGNIGVTSINLPRIAYKSR 306 (579)
T ss_pred HHHHHHHHHHHHhCCCCcccchhhhcc-C----CCe-eccCCCcccccceecCCCCccCcccceeeeEEcchHHHHHHhC
Confidence 789999999999999999886543211 1 222 22244443332211 1123344 45999999865222
Q ss_pred CC----hHHHHHHHHHHHHHHHHHhhc------cCCcHHHHHH---H----------hhhcCCcccccchHHHHHH-HcC
Q psy8865 401 LD----PIKLKKTIRIAMRMLDNVIDI------NYYAVKKAKY---S----------NLRHRPVGLGIMGFQDCLH-IMK 456 (749)
Q Consensus 401 ~D----~~~l~~~v~~avr~LD~vId~------~~yp~~~~~~---~----------n~~~R~IGlGv~Glad~L~-~lg 456 (749)
-| |+.|.+.+.++.+.|+.=.+. ..+|.-.... . ..++-.+-||+.||++++. .+|
T Consensus 307 ~d~~~F~~~L~~~l~l~~~~L~~r~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~siG~iGL~Ea~~~l~G 386 (579)
T TIGR02487 307 GDEEEFFEELDEYLEIAKEALEIRREYLKKMLAKDLPPMYSQGGWDGGNLLDESVEEILKSGTNSIGFIGLNEALVALTG 386 (579)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHhccccccccccchHHHHhhcCeeeeehhhHHHHHHHhcC
Confidence 23 456778888887777643331 2334332211 0 0234567899999999886 588
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHH
Q psy8865 457 IP-YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535 (749)
Q Consensus 457 i~-y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~ 535 (749)
.. .+|++|.+|+.+|.++|...+-+.+. |.|---+.+.+ |-+... .+ =
T Consensus 387 ~~~~~~~~a~~f~~~Il~~m~~~~~~~~~----e~g~~~~l~~T-------PAEs~~----------------~r----f 435 (579)
T TIGR02487 387 KHLHEEEEARELAIRILEFIRDKADEFKK----ETGLNYSVYAT-------PAESLC----------------GR----F 435 (579)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCceEEEEC-------CcchHH----------------HH----H
Confidence 87 47899999999999999988886663 44521111111 111000 00 0
Q ss_pred HHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcC
Q psy8865 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFD 615 (749)
Q Consensus 536 Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~ 615 (749)
.+.+-+++|.. .|++.- |+|.|-|
T Consensus 436 a~~D~~~fg~i----------------~gv~d~--~yYTNS~-------------------------------------- 459 (579)
T TIGR02487 436 AKKDREEFGEI----------------PGVTDK--PYYTNSF-------------------------------------- 459 (579)
T ss_pred HHHHHHHcCCC----------------CCCCCC--CcCCCCE--------------------------------------
Confidence 12233446631 122211 3333311
Q ss_pred CCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC--CCHHHHHHHHHHHHHcCC
Q psy8865 616 GNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN--KSGKKLDETYKLAWLRGL 684 (749)
Q Consensus 616 Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~--~~~~~l~~~~~~Awk~Gl 684 (749)
.+| --.++++.+.|+..+..|++..-+...-+++++ ++.+.+.++..+|.+.|+
T Consensus 460 -------hip--------v~~~~~~~eki~~e~~f~~~~~GG~i~~v~l~e~~~n~eal~~lv~~a~~~~i 515 (579)
T TIGR02487 460 -------HVP--------VYEDVNLGEKIDIEAPFHPLTNGGHITYIELDEAIPDPEALKDITKKAMKNGI 515 (579)
T ss_pred -------eeC--------CCCCCCHHHHHHhhcchhcccCCceEEEEEcCCCCCCHHHHHHHHHHHHhcCC
Confidence 011 012578889999999999999999999999985 578999999999999873
No 38
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=97.32 E-value=0.0034 Score=73.57 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=80.5
Q ss_pred eHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCC---------CCcccccccc--cccchh
Q psy8865 326 SALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTS---------KNEIGVCNLG--SINLTL 394 (749)
Q Consensus 326 ~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~---------~~e~avCNL~--SINL~~ 394 (749)
+-.+||+..+++..+.|.|++.+...-....+ -|+...+.+. +.....+|++ ||||++
T Consensus 224 ~~~~l~~~a~k~~~~~~~p~~~~~~~~~~~~~-----------McCR~~l~~~~~~~~~~~~~~~~~~GnigvVTINLPR 292 (546)
T PF13597_consen 224 PNYDLFELAAKCGAKRFYPDFNSDLDPDDVRS-----------MCCRLRLSLNELGNGGGLFGSGDGTGNIGVVTINLPR 292 (546)
T ss_dssp TTHHHHHHHHHHHHHHS--EEEEHHHHHH--------------BTTTB-----B-TTS-B-----TT-BEEEEEEEEHHH
T ss_pred chHHHHHHHHHHhHHhCCCCeecCCCCcceec-----------cccccccChhhhccCCcceeccccccceeEEEecHHH
Confidence 35799999999999999999965442222111 2333222221 0112456665 889999
Q ss_pred hhccCCCC---hHHHHHHHHHHHH-HHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCC-CCCHHHHHHHH
Q psy8865 395 HMKNGKLD---PIKLKKTIRIAMR-MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP-YSSKEAIKFAD 469 (749)
Q Consensus 395 ~v~~g~~D---~~~l~~~v~~avr-~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~-y~S~ea~~l~~ 469 (749)
..-...-| |++|.+. ..+.| .+-..++.+.||.-...-...++-..-||+.||++++..+|-. .+++||.+|+.
T Consensus 293 iA~~a~~d~~~f~~L~~~-~~~~r~~i~~~~~~~~~P~~~~~~~~~~~~~~tIG~iGL~Ea~~~~g~~~~~~~~~~~f~~ 371 (546)
T PF13597_consen 293 IAYEAKGDEDFFEELDKL-MLAKRKVIKKLLEAGLYPFTKQYLWRLKNHFSTIGIIGLNEALQNFGGKHHESPEGREFAL 371 (546)
T ss_dssp HHHTTEE-HHHHHHHHHH-HHHHHHHHHHHHHGGG-HHHHTST-SHTTTTSEEEEE-HHHHHHHH---------TS--HH
T ss_pred HHHHhCCcHHHHHHHHHH-HHHHHHHHHhhccCCcCchhHhhHhhhcCeeEeecHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 86432223 3445332 33333 4556667788887554333456667889999999999988776 47899999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8865 470 QSMEMICYYAYYAS 483 (749)
Q Consensus 470 ~i~e~i~~~A~~aS 483 (749)
+|+++|...+.+.+
T Consensus 372 ~Vl~~m~~~~~~~~ 385 (546)
T PF13597_consen 372 KVLEHMRDKADEFQ 385 (546)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987776444
No 39
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.23 E-value=0.023 Score=67.92 Aligned_cols=243 Identities=16% Similarity=0.233 Sum_probs=145.2
Q ss_pred HHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCC-------C---CCcccccccc--cccchhhhcc
Q psy8865 331 WRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNT-------S---KNEIGVCNLG--SINLTLHMKN 398 (749)
Q Consensus 331 ~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~-------~---~~e~avCNL~--SINL~~~v~~ 398 (749)
+..+.++..+.|.||+.+-.+.. ..| |.+. --|+-..+.. . .....++|+| ||||++..-.
T Consensus 345 ~d~~~e~~ak~g~p~f~n~~~~~-~~~----~~~~--~MgCR~~l~~~~~~~~~~g~~g~~~~~GnigvvTiNLPRia~~ 417 (656)
T PRK08270 345 ADLLFEMTAKYGLPYFQNFINSD-LKP----EDVR--SMCCRLQLDLRELRKRGGGLFGSAELTGSIGVVTINLPRLGYL 417 (656)
T ss_pred HHHHHHHHHhhCCcccccccccc-cCC----CCcc--ccCCCCccchhhhhhhcCCcccCCCccceeeeEeccHHHHHHH
Confidence 45677778899999998522211 111 1122 1455443322 1 1112335554 8999998654
Q ss_pred CCCC----hHHHHHHHHHHHHHHH-------HHhhccCCcHHHHHHHhhhcCCcccccchHHHHHH-HcCCCCCCHHHHH
Q psy8865 399 GKLD----PIKLKKTIRIAMRMLD-------NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLH-IMKIPYSSKEAIK 466 (749)
Q Consensus 399 g~~D----~~~l~~~v~~avr~LD-------~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~-~lgi~y~S~ea~~ 466 (749)
.+ | |+.|.+.+.+|.+.|. ..+.-+.||.-.......++...-||+.||++++. ..|...+++||.+
T Consensus 418 a~-d~~~F~~~L~~~l~la~~~L~~r~~~l~~~~~~~l~p~~~~~l~~~~~~~~TIG~iGl~E~~~~~~G~~~~~~e~~~ 496 (656)
T PRK08270 418 SK-DEEEFFARLDELMDLAKDSLEIKRKVIERLTDKGLYPYTKRYLGTLRNHFSTIGLNGMNEACLNFLGKDITTEEGRA 496 (656)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHhcCCeeeeehhhHHHHHHHHhCCCCCCHHHHH
Confidence 45 6 4556666777766543 33444568865443222333334689999999986 7888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCc
Q psy8865 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMR 546 (749)
Q Consensus 467 l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~R 546 (749)
|+.+|+++|...+-+.+ +|.|---+.++++ -+.. --.=.|.+-+++|..
T Consensus 497 f~~~vl~~m~~~~~~~~----~e~g~~~~l~~TP-------AEs~--------------------~~rfak~D~~~fg~i 545 (656)
T PRK08270 497 FALRVLDHMRERLVEFQ----EETGNLYNLEATP-------AEGT--------------------TYRLAKEDKKRYPDI 545 (656)
T ss_pred HHHHHHHHHHHHHHHHH----HHHCCceEEEECc-------cchH--------------------HHHHHHHHHHHcCCc
Confidence 99999999998887666 4556311122221 1110 001112334556631
Q ss_pred ccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCCh
Q psy8865 547 NSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPD 626 (749)
Q Consensus 547 Ns~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~ 626 (749)
- +.|++.. |+|.|-|. +|
T Consensus 546 ~--------------~~g~~d~--~YYTNS~h---------------------------------------------~~- 563 (656)
T PRK08270 546 I--------------TAGTDEE--PYYTNSTQ---------------------------------------------LP- 563 (656)
T ss_pred c--------------cCCCCCC--CcccCCcc---------------------------------------------cC-
Confidence 1 2233321 44444211 11
Q ss_pred hHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC--CCHHHHHHHHHHHHH
Q psy8865 627 DLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN--KSGKKLDETYKLAWL 681 (749)
Q Consensus 627 ~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~--~~~~~l~~~~~~Awk 681 (749)
-..++++..-|+..+..|++.+-+--.-+++++ ++.+.+.++-.++.+
T Consensus 564 -------v~~~~~~feki~~e~~~~~~~~GG~I~hv~l~e~~~n~~a~~~lv~~~~~ 613 (656)
T PRK08270 564 -------VGYTDDPFEALELQDELQTKYTGGTVFHLYLGEAISDAEACKKLVKKALE 613 (656)
T ss_pred -------CCCCCCHHHHHhhhccCcceecceEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 123467888899999999999988888888875 478889998888865
No 40
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.11 E-value=0.028 Score=66.74 Aligned_cols=252 Identities=19% Similarity=0.200 Sum_probs=152.1
Q ss_pred eHHHHHHHHHHHHHhcCCeEEEecchh-hhh----CCCCccceEeeeccccccccCCC----CCcccccccc--cccchh
Q psy8865 326 SALYLWRKILSMLFETGHPWITFKDAC-NIR----SPQQHVGIIHSSNLCTEITLNTS----KNEIGVCNLG--SINLTL 394 (749)
Q Consensus 326 ~Ar~L~~~i~~~~~etG~P~i~f~D~~-N~~----~p~~~~g~I~~SNlC~EI~l~~~----~~e~avCNL~--SINL~~ 394 (749)
|..+||+..+++..+.+.|.++|.|.. |.. +|.. .+. --|+-..+... ......+|++ +|||++
T Consensus 259 p~~~l~~la~~~~~kr~~p~f~~~~~~~n~~~~~g~~~~---~~~--~MgCR~~l~~~~~G~~~~~g~GnigvVTINLPR 333 (618)
T PRK14704 259 PNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPES---EVC--YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVK 333 (618)
T ss_pred chHHHHHHHHHHhcCcCCcceeccccccchhhhcCCCCc---ccc--cCcccceeccccCCCcCCCccceeeeEEeeHHH
Confidence 467899999999999999999999853 211 2210 111 23333322211 0122345654 899998
Q ss_pred hhccCCCC----hHHHHHHHHHHHHHHHHHhhc------cCCcHHHHHHHh---------------hhcCCcccccchHH
Q psy8865 395 HMKNGKLD----PIKLKKTIRIAMRMLDNVIDI------NYYAVKKAKYSN---------------LRHRPVGLGIMGFQ 449 (749)
Q Consensus 395 ~v~~g~~D----~~~l~~~v~~avr~LD~vId~------~~yp~~~~~~~n---------------~~~R~IGlGv~Gla 449 (749)
..-... | |+.|.+.+.++.+.|+.-++. ..+|.--..-.. .++-.+-||+.||+
T Consensus 334 IA~~a~-d~e~F~~~L~~~l~l~~~~L~~R~~~l~~~~~~~~P~l~~~g~~~~~~~l~~~~~~~~~~~~~t~siG~iGL~ 412 (618)
T PRK14704 334 LALISG-SKEAFFEALNYYLDLGIKQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILKQGTLSLGFIGLA 412 (618)
T ss_pred HHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHCcccccccccCCCcchhhhcccceeeeeHHHHH
Confidence 764322 4 456677777887777653331 223433111000 01123568999999
Q ss_pred HHHHH-cCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCc
Q psy8865 450 DCLHI-MKIPY-SSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527 (749)
Q Consensus 450 d~L~~-lgi~y-~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~ 527 (749)
+++.. .|..+ .|+||.+|+.+|++.|...+-+.+ +|.|---+.++++ -+..
T Consensus 413 Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~----~e~g~~~nl~~TP-------AEs~---------------- 465 (618)
T PRK14704 413 ECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKAT----EEHELNFSVIATP-------AEGL---------------- 465 (618)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCceeeecc-------cccH----------------
Confidence 98754 66666 799999999999999998887665 4556311222222 1110
Q ss_pred hhhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHH
Q psy8865 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607 (749)
Q Consensus 528 ~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~ 607 (749)
--.-.+.+-+++|+ +.|++. .|+|.|-|.
T Consensus 466 ----~~Rfa~~D~~~fg~----------------i~gv~d--~~YYTNS~h----------------------------- 494 (618)
T PRK14704 466 ----SGKFVKKDREEFGV----------------ISGITN--HNYYTNSFH----------------------------- 494 (618)
T ss_pred ----HHHHHHHHHHhCCC----------------cCCCCC--CCcccCcee-----------------------------
Confidence 00112233345552 124443 466655321
Q ss_pred HhhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeC-C--CCHHHHHHHHHHHHHcCC
Q psy8865 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS-N--KSGKKLDETYKLAWLRGL 684 (749)
Q Consensus 608 ~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~-~--~~~~~l~~~~~~Awk~Gl 684 (749)
+| --.++++...|+..+..|++..-+...-++++ + ++.+.+.++-..|.+.|+
T Consensus 495 ----------------ip--------V~~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~i 550 (618)
T PRK14704 495 ----------------IP--------VYYNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGV 550 (618)
T ss_pred ----------------cc--------CCCCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcCC
Confidence 11 11247788899999999999999999999994 4 578889999888887655
Q ss_pred c
Q psy8865 685 K 685 (749)
Q Consensus 685 K 685 (749)
.
T Consensus 551 ~ 551 (618)
T PRK14704 551 G 551 (618)
T ss_pred c
Confidence 4
No 41
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.02 E-value=0.053 Score=65.52 Aligned_cols=156 Identities=18% Similarity=0.099 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCC------CCcccccccc--cccchhhhcc
Q psy8865 327 ALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTS------KNEIGVCNLG--SINLTLHMKN 398 (749)
Q Consensus 327 Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~------~~e~avCNL~--SINL~~~v~~ 398 (749)
..+||+..+++..+.+.|.++|.|..-.. .|.+.++ -|+-..|... ...++.+||| ||||++.--.
T Consensus 347 ~~~l~~~a~~~~~k~~~p~f~~~~~~~~~-----~g~~~~~-MgCR~~l~~~~~~~g~~~~~Gr~nigvvTiNLPRia~~ 420 (711)
T PRK09263 347 NYDIKQLALECATKRMYPDILNYDKIVEL-----TGSFKTP-MGCRSFLQGWKDENGEEVHDGRNNLGVVTLNLPRIALE 420 (711)
T ss_pred hHHHHHHHHHHhccccCCceecccchhhc-----CCCeeeC-CCCCCcCcchhccCCCccccccceeeEEeccHHHHHHH
Confidence 56888888999999999999998853211 1333332 4444322111 1124567776 8899987532
Q ss_pred CCCC----hHHHHHHHHHHHHHHHHHhh------ccCCcHHHHH--------------HHhhhcC-CcccccchHHHHHH
Q psy8865 399 GKLD----PIKLKKTIRIAMRMLDNVID------INYYAVKKAK--------------YSNLRHR-PVGLGIMGFQDCLH 453 (749)
Q Consensus 399 g~~D----~~~l~~~v~~avr~LD~vId------~~~yp~~~~~--------------~~n~~~R-~IGlGv~Glad~L~ 453 (749)
..=| |+.|.+.+.+|.+.|..=.+ ...+|+-... .--+..| .|-||+.||++++.
T Consensus 421 ~~~d~~~F~~~Ld~~l~la~~~L~~r~~~~~~~~~~~~P~l~~~g~~~~~l~~~~~~~~~~~~~~~T~siG~iGl~E~~~ 500 (711)
T PRK09263 421 AKGDEDKFWEILDERLELAKKALMTRIERLKGAKPRVAPILYMYGAFGVRLKADDDVDELFKNGRATISLGYIGLYETIN 500 (711)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHhccccccCCCCcchHHHhcCCCceEeeeHhHHHHHHH
Confidence 1113 45677788888776653222 2456653321 0011111 45799999999986
Q ss_pred -HcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy8865 454 -IMKIPYS-SKEAIKFADQSMEMICYYAYYASTELAEEKGR 492 (749)
Q Consensus 454 -~lgi~y~-S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~ 492 (749)
..|-.+. ++||.+|+.+|+++|...+-+.+ +|.|-
T Consensus 501 ~~~G~~~~e~~e~~~fa~~vl~~m~~~~~~~~----~e~g~ 537 (711)
T PRK09263 501 ALYGGSWEVNPEAKAFALAIVKRMKDACDQWK----KETGY 537 (711)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence 6888876 99999999999999988887655 55663
No 42
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.75 E-value=0.055 Score=65.59 Aligned_cols=255 Identities=19% Similarity=0.207 Sum_probs=149.6
Q ss_pred eHHHHHHHHHHHHHhcCCeEEEecchh-hh--hCCCCccceEeeeccccccccCCC----CCccccccc--ccccchhhh
Q psy8865 326 SALYLWRKILSMLFETGHPWITFKDAC-NI--RSPQQHVGIIHSSNLCTEITLNTS----KNEIGVCNL--GSINLTLHM 396 (749)
Q Consensus 326 ~Ar~L~~~i~~~~~etG~P~i~f~D~~-N~--~~p~~~~g~I~~SNlC~EI~l~~~----~~e~avCNL--~SINL~~~v 396 (749)
|..+||+..+++..+.+.|+++|.|.. |. ..|....-.|. --|+-..+... ..-.+.+|+ .+|||++..
T Consensus 378 p~~~l~~la~~~~~kr~~p~f~~~~~~~~~~~~~~g~~~~~v~--~MgCR~~l~~~~~G~~~~~g~Gn~gvVTINLpRiA 455 (735)
T PRK07111 378 PNYDLFKLACRVAAKRLFPNFSFLDAPFNKEYYDKGRPPTEVA--TMGCRTRVMSNVNGEEGTKGRGNLSFTTINLPRLA 455 (735)
T ss_pred chHHHHHHHHHHhcCcCCCceeecccccchhccCCCCcCcCcc--cCCCcceecccCCCcccccCccceeEEEecHHHHH
Confidence 467899999999999999999999864 32 22321000011 13443333211 111224454 599999875
Q ss_pred c--cCCCC--hHHHHHHHHHHHHHHHH---Hh---hccCCcHHHHHHH---h------------hhcCCcccccchHHHH
Q psy8865 397 K--NGKLD--PIKLKKTIRIAMRMLDN---VI---DINYYAVKKAKYS---N------------LRHRPVGLGIMGFQDC 451 (749)
Q Consensus 397 ~--~g~~D--~~~l~~~v~~avr~LD~---vI---d~~~yp~~~~~~~---n------------~~~R~IGlGv~Glad~ 451 (749)
- .|..| |+.|.+.+.++.+.|+. +| ....+|+-..... . -++-.+.||+.||+++
T Consensus 456 ~~a~~d~~~F~~~L~~~l~la~~~L~~R~~~l~~~~~~~~P~~~~~g~~l~~~~l~~~~~~~~~~~~~t~tiG~iGL~Ea 535 (735)
T PRK07111 456 IEAKKDIDKFFELLDERLELAIEQLLHRYEVQKTLKVKDFPFLMGQGLWKGSENLGPDDSIEPVLKQGTLGIGFIGLAET 535 (735)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchHhhcccccccccCCCccchhHHhhcCceeeeHHHHHHH
Confidence 4 22211 45677777777777752 22 1234565321000 0 1233567999999999
Q ss_pred HHH-cCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcccCCCCchhhHHHHHHHhcccccccCch
Q psy8865 452 LHI-MKIPY-SSKEAIKFADQSMEMICYYAYYASTELAEEKGR-YSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528 (749)
Q Consensus 452 L~~-lgi~y-~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~-~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~ 528 (749)
+.. .|..+ .+++|.+|+.+|+++|...+-+.+. |.|- |. ...+ |-+.. .
T Consensus 536 ~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~~----e~G~~~~-l~~t-------PAEs~----------------~ 587 (735)
T PRK07111 536 LVALTGKHHGESEEAQELGLKIVSHMRDFCDEYKE----EYKLNYS-LLAT-------PAEGL----------------S 587 (735)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HhCCCce-EEEc-------ccchh----------------H
Confidence 865 77776 7999999999999999888776553 3341 11 1111 11100 0
Q ss_pred hhhhHHHHHHHHHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHH
Q psy8865 529 ESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMI 608 (749)
Q Consensus 529 ~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~ 608 (749)
. .=.+.+-+++|+ +.|++. .|+|.|-|.
T Consensus 588 ~----rfa~~D~~~fg~----------------i~g~~d--~~yYTNS~h------------------------------ 615 (735)
T PRK07111 588 G----RFIKMDRKKFGE----------------IKGVTD--KEYYTNSFH------------------------------ 615 (735)
T ss_pred H----HHHHHHHHhcCC----------------CCCCCC--CCcccccee------------------------------
Confidence 0 001333455663 113322 134433210
Q ss_pred hhhhhcCCCcccccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC---CCHHHHHHHHHHHHHcCCc
Q psy8865 609 ANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN---KSGKKLDETYKLAWLRGLK 685 (749)
Q Consensus 609 ~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~---~~~~~l~~~~~~Awk~GlK 685 (749)
+| + -.++++...|+..+..|++..-+...-+++++ ++.+-+.++-..|.+.|+.
T Consensus 616 ---------------lp-----v---~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~e~~~n~eal~~lvk~~~~~~i~ 672 (735)
T PRK07111 616 ---------------VP-----V---YYPISIFEKIEIEAPYHKLTNGGHISYVELDGDPSKNVEAFEIIVKAMKNTNIG 672 (735)
T ss_pred ---------------ec-----C---CCCCCHHHHHHhhcccccccCCeEEEEEEeCCccCCCHHHHHHHHHHHHhCCCc
Confidence 11 0 12467888999999999999999999999873 4778888888888776654
No 43
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.30 E-value=0.18 Score=60.10 Aligned_cols=150 Identities=16% Similarity=0.234 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCC-----------------------------CC
Q psy8865 329 YLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNT-----------------------------SK 379 (749)
Q Consensus 329 ~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~-----------------------------~~ 379 (749)
++++.++++..+.|.||++|.+.. .|. +.. +-|+-..|.. +.
T Consensus 251 ~~~~~~~~~~ak~g~pyf~n~~~~---~~~---~~~---~McCR~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (625)
T PRK08579 251 EVFEAVFTTAAKRGSFYWLNTRVV---DPD---ASY---AMCCRINIDKNELMYAFGVGGKSRRDLEDAEEEYLEKLEKQ 321 (625)
T ss_pred hHHHHHHHHHhhhCCcceeccccc---CCC---CCc---cCCCcCcccccccccccccccccccccccccccccchhhcc
Confidence 778889999999999998875422 121 221 4565544310 00
Q ss_pred ---------CcccccccccccchhhhccCCCC----hHHHHHHHHHHHHHHH---HHhh----c--cCCcHHHHHHHhh-
Q psy8865 380 ---------NEIGVCNLGSINLTLHMKNGKLD----PIKLKKTIRIAMRMLD---NVID----I--NYYAVKKAKYSNL- 436 (749)
Q Consensus 380 ---------~e~avCNL~SINL~~~v~~g~~D----~~~l~~~v~~avr~LD---~vId----~--~~yp~~~~~~~n~- 436 (749)
.-++.+..-||||++..-...=| |+.|.+.+.+|.+.|. ..++ . ..||.-...-...
T Consensus 322 r~gG~~~~~~~~GnigVVTINLPRIa~~a~gd~~~F~~~Ld~~lela~~~L~~kr~~~~~~~~~~~~l~P~~~~~l~~~~ 401 (625)
T PRK08579 322 RFGGLWAMPDITGSVNVTTVNLPRIALEARGDDDKFWELYEERLELVRITLDWFRERYVKLLKTYPEMYSMIKEYLEEFP 401 (625)
T ss_pred cccccccCCCCcCceeeEeccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHhchhhh
Confidence 01233344599999975421113 4667777778877766 3333 3 4566522111112
Q ss_pred hcCCcccccchHHHHHHH-cCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy8865 437 RHRPVGLGIMGFQDCLHI-MKIP--------YSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491 (749)
Q Consensus 437 ~~R~IGlGv~Glad~L~~-lgi~--------y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G 491 (749)
++.-.-||+.||++++.. .|.. -++++|.+++.+|+++|...+-+.+ +|.|
T Consensus 402 ~~~~~tIG~iGl~E~~~~~~G~~~~~~~~~~~~~~~~~~~~~~il~~mr~~~~~~~----~etg 461 (625)
T PRK08579 402 SSHFNTIGIIGLPEAAAIYLGEPKLWTEGSRRDWLEAAELMKKMVEFAVEKAREWM----KETG 461 (625)
T ss_pred hCCEEEEEeehHHHHHHHHcCCCcccccCChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHC
Confidence 223478999999999866 6643 4567899999999999888877544 4556
No 44
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=95.48 E-value=0.13 Score=60.69 Aligned_cols=104 Identities=17% Similarity=0.277 Sum_probs=75.7
Q ss_pred cccccccccccchhhhccCCCChHHHHHHHHHHHH-------HHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHH
Q psy8865 381 EIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR-------MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLH 453 (749)
Q Consensus 381 e~avCNL~SINL~~~v~~g~~D~~~l~~~v~~avr-------~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~ 453 (749)
-+++++.-+|||++..-... | |.+.+.+|.+ .|...++-+.||+-.......+..-.-||+.|+++++.
T Consensus 320 ~tGSigVVTINLPRia~~a~-~---L~~~l~la~~~L~~kr~~l~~~~~~g~~P~~~~~~~~~~~~f~TIGiiGl~Ea~~ 395 (586)
T TIGR02827 320 ATGSINVITINMNRLVQDSR-D---LAHEVEKIHKYQVAYRELMKEYLAAGLLPLYDAGFITLDKQFLTIGINGMVEAAE 395 (586)
T ss_pred cccccceEEecHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHhhhcccccceEeeeHhhHHHHHH
Confidence 46677788999999763211 2 5555555544 34455666778877654444444558899999999998
Q ss_pred HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy8865 454 IMKIP-YSSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492 (749)
Q Consensus 454 ~lgi~-y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~ 492 (749)
.+|.. -+|++|.+|+.+|+++|+..+.+.+ +|.|-
T Consensus 396 ~~G~~~~~~~e~~~fa~~vl~~mr~~~~~~~----~etG~ 431 (586)
T TIGR02827 396 FMGLTVGYNEEYKDFVQNVLKVIYEANQKAY----HEYGF 431 (586)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence 88988 5799999999999999999888666 55663
No 45
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=95.22 E-value=0.085 Score=62.66 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=77.6
Q ss_pred cccccccccccchhhhccCCCC----hHHHHHHHHHHHHH-------HHHHhhccCCcHHHHHHHhhhcCCcccccchHH
Q psy8865 381 EIGVCNLGSINLTLHMKNGKLD----PIKLKKTIRIAMRM-------LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQ 449 (749)
Q Consensus 381 e~avCNL~SINL~~~v~~g~~D----~~~l~~~v~~avr~-------LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Gla 449 (749)
-+++++.-||||++..-..+ | |+.|.+.+.+|.+. |...+..+.+|+-...-...++.-+-||+.||+
T Consensus 347 ~tGSigVVTINLPRia~~a~-~~~~F~e~Ld~~lela~~~l~~~R~~l~~~~~~~~~P~~~~~~~~l~~~f~TIGiiGl~ 425 (623)
T PRK08271 347 NTGSINVITINLPRIAQEAR-DRDDFLEILRERVDKIHKYQLAYREIMEERIAAGMLPLYDAGFISLDKQFLTIGINGMV 425 (623)
T ss_pred ccCCcceEEccHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhcccccceEeeeHhhHH
Confidence 35567778999999764221 2 45677777777663 344555677887654333334444799999999
Q ss_pred HHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy8865 450 DCLHIMKIP-YSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491 (749)
Q Consensus 450 d~L~~lgi~-y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G 491 (749)
+++..+|.. .+++||.+|+.+|+++|...+.+.+ +|.|
T Consensus 426 Ea~~~~G~~~~~~~e~~~f~~~il~~mr~~~~~~~----~etG 464 (623)
T PRK08271 426 EAAEFMGLTVGYNEEYKDFVQEVLKVIYEANEKAS----KEYG 464 (623)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHC
Confidence 999989988 7899999999999999999888776 4556
No 46
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=87.50 E-value=43 Score=38.40 Aligned_cols=252 Identities=17% Similarity=0.160 Sum_probs=154.8
Q ss_pred eeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCC-CccceEeeeccccccccCCCCCcccccccccccchhhhcc
Q psy8865 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ-QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN 398 (749)
Q Consensus 320 ~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~-~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~~ 398 (749)
+.-..|...++.+.-+++..++..|-+.+ |.+++..-- ...|.+.|=| .||-.++ ...|.-|||....+.
T Consensus 170 ~Yd~~~Tpdd~~~~A~~~~l~csKP~faN-~~~~~~~~~~~~ygIvSCYN-----~Lp~~GG---a~TLvRlnL~~vA~~ 240 (487)
T PF11230_consen 170 KYDPEITPDDFAEQAIENILECSKPHFAN-HPMHRKDFGEGDYGIVSCYN-----SLPLGGG---AYTLVRLNLKEVAKR 240 (487)
T ss_pred eeCCCCCcHHHHHHHHHHHHhcCCchhcC-CHhHHHhcCCCCeeEEEecc-----ccccCCc---chhhhhhhHHHHHHH
Confidence 33456678999999999999999999865 333333222 4456666555 2344442 578999999876542
Q ss_pred --CC--CChHHHHHHHHHHHHHHHHHhhc-----cCCcHHHH-HH-HhhhcCCcc-cccchHHHHHH----HcCC--CCC
Q psy8865 399 --GK--LDPIKLKKTIRIAMRMLDNVIDI-----NYYAVKKA-KY-SNLRHRPVG-LGIMGFQDCLH----IMKI--PYS 460 (749)
Q Consensus 399 --g~--~D~~~l~~~v~~avr~LD~vId~-----~~yp~~~~-~~-~n~~~R~IG-lGv~Glad~L~----~lgi--~y~ 460 (749)
+. |=...|-+.+..+.+++|.=|.. ++|...-. ++ -.++.|=.| -|+.|||++.. +-|. .|+
T Consensus 241 a~~~~dF~~~~LP~~~~~~~~~md~R~~flvEeS~FFessFLvkEGlI~~~rF~~MFGi~GlAEaVN~Ll~~eg~~~~yG 320 (487)
T PF11230_consen 241 AKDIEDFLNNVLPYYCDLMLEYMDARIRFLVEESNFFESSFLVKEGLIERDRFTPMFGIVGLAEAVNILLEKEGKEERYG 320 (487)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhccccchhhcchHhHHHHHHHHHHHHHhccCCccccC
Confidence 11 22356788888888888876652 44432111 11 123445455 49999998643 3344 786
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHH
Q psy8865 461 -SKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539 (749)
Q Consensus 461 -S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~ 539 (749)
|++|-+|..+|++.|.... -.+| .+|..|+=
T Consensus 321 ~~~~An~Lg~~I~~~l~~~V-----------~~~~----~~y~~~~~--------------------------------- 352 (487)
T PF11230_consen 321 HDEEANELGVRIMEKLAEIV-----------KSHP----VKYCEGTG--------------------------------- 352 (487)
T ss_pred CChHHHHHHHHHHHHHHHHH-----------hcCC----CccccccC---------------------------------
Confidence 7889999999988764321 1111 12221110
Q ss_pred HHHhCCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcc
Q psy8865 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLS 619 (749)
Q Consensus 540 i~~~G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq 619 (749)
| ...|-|. -| +|.=.|+|+|+.=.+ |
T Consensus 353 ----g--r~lLHAQ--vG-i~~D~~~TPG~RIp~----------G----------------------------------- 378 (487)
T PF11230_consen 353 ----G--RFLLHAQ--VG-ISSDKGVTPGVRIPY----------G----------------------------------- 378 (487)
T ss_pred ----C--EEEEEec--cC-ccccCCCCCCCcCcC----------C-----------------------------------
Confidence 0 0111111 12 344456666543111 1
Q ss_pred cccCCChhHHhhcccccCCCHHHHHHHHHHHcccccccCcceeeeCC---CCHHHHHHHHHHHHHcCCcE-EEEeCCCcc
Q psy8865 620 QISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISN---KSGKKLDETYKLAWLRGLKT-TYYLRSISA 695 (749)
Q Consensus 620 ~i~~ip~~~k~~y~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~---~~~~~l~~~~~~Awk~GlKt-~YY~rs~~~ 695 (749)
-|-++-.||...|...+|-..++|=-+-+++ .+++-+.++..=|.+.|++- +.|.-+-.-
T Consensus 379 ----------------~EP~~~~hl~~~A~~H~yfpsGi~DIf~~d~T~k~NP~A~ldi~kGAf~~G~Ryfs~y~~~sDl 442 (487)
T PF11230_consen 379 ----------------EEPDLVDHLQASAPFHKYFPSGIGDIFTFDETVKNNPEALLDICKGAFSLGMRYFSAYVSDSDL 442 (487)
T ss_pred ----------------CCCCHHHHHHHhcccccCCCCCcccccccchhhHhCHHHHHHHHHHHHhcCCeEEEEecCCCce
Confidence 1335677999999999999999998877764 46788999999999999996 466555444
Q ss_pred ccc
Q psy8865 696 NYA 698 (749)
Q Consensus 696 ~~~ 698 (749)
.++
T Consensus 443 VRV 445 (487)
T PF11230_consen 443 VRV 445 (487)
T ss_pred EEE
Confidence 444
No 47
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=58.40 E-value=35 Score=41.47 Aligned_cols=121 Identities=26% Similarity=0.267 Sum_probs=73.2
Q ss_pred eccccccccCCCCCcccccccc--cccchhhhccCCCC----hHHHHHHHHHHHHHHHHHhh-------cc-CCcH-HH-
Q psy8865 367 SNLCTEITLNTSKNEIGVCNLG--SINLTLHMKNGKLD----PIKLKKTIRIAMRMLDNVID-------IN-YYAV-KK- 430 (749)
Q Consensus 367 SNlC~EI~l~~~~~e~avCNL~--SINL~~~v~~g~~D----~~~l~~~v~~avr~LD~vId-------~~-~yp~-~~- 430 (749)
|+|++.....-..+....+||+ +|||++.--..+-| |+.|.+.+.++...|.-... -+ .|+. ..
T Consensus 385 ~~l~~~~~~~~~~~~~~~gn~~vvTlNLPRiA~~a~gD~~kf~e~l~~~lei~keaL~~r~~r~~~~~~~~~l~~~~~~~ 464 (700)
T COG1328 385 TFLSGNETGDGEGDTLGTGNLGVVTLNLPRIALEAKGDDDKFFEILHERLEIAKEALLIRRERLKELIAKNALYMVGALG 464 (700)
T ss_pred hcccccccCCcccccccccceeeEEEeccHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhc
Confidence 4555555443333445567876 88999865322224 45666666666666653332 12 1111 00
Q ss_pred ---------HHHHhhhcCCcccccchHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy8865 431 ---------AKYSNLRHRPVGLGIMGFQDCLHIMKI--PYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491 (749)
Q Consensus 431 ---------~~~~n~~~R~IGlGv~Glad~L~~lgi--~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G 491 (749)
+.......-.+.+|..|+++++..+.- -++++||..+..++.+.|+.++.+ +-+|.|
T Consensus 465 ~~~~~~~~~~~~~~~~~~t~s~g~igl~E~l~~~~g~~~~~~~ea~~~~~~iv~~~~~~~~~----~~~e~g 532 (700)
T COG1328 465 GRLNQEFDGSTIFRNGRATISLGFIGLNEMLKYLTGEHLHESEEAKKFGIKIVEYIREYADK----WKKETG 532 (700)
T ss_pred cccccccchhhhhccccceEEEeecchHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHH----HHHhcC
Confidence 111222334589999999999988644 236999999999999999888774 445555
No 48
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=36.03 E-value=67 Score=29.03 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=39.4
Q ss_pred CChhhHHHHHHhcccccC-CeE---------ee-cHHHHHHHHHhHhhcc-----ccCcHHHHHHHHHHHh
Q psy8865 78 FNYLGLKILYDRYFLHIE-GIR---------IE-MPQFFFMRIAMGLSLN-----ESNREKCAIKFYNLLS 132 (749)
Q Consensus 78 f~y~g~~~l~~rYllk~~-~~~---------~E-~pq~~~mRVA~~la~~-----e~~~~~~a~~fY~~ls 132 (749)
++-.+..++..||+.|.+ ..+ .| +-.+++.|||...+.- -.+.++.++.||+.|.
T Consensus 17 WSq~AtdI~AqKYFRk~Gvp~~~~~~~~~~g~E~S~rQv~~Rla~tw~~wG~~~GYF~t~eDA~~FydEl~ 87 (93)
T PF08471_consen 17 WSQVATDILAQKYFRKAGVPARDPDEEARFGGETSVRQVFDRLAGTWTYWGWKGGYFATEEDAEAFYDELT 87 (93)
T ss_pred HHHHHHHHHHHHHhhhcCCCcccccccccccccchHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 366788889999998741 111 25 5678999999876632 2356788999999875
No 49
>PRK15329 chaperone protein SicP; Provisional
Probab=34.64 E-value=48 Score=32.07 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.9
Q ss_pred EEeHHHHHHHHH---HHHHhcCCeEEEecchh
Q psy8865 324 KISALYLWRKIL---SMLFETGHPWITFKDAC 352 (749)
Q Consensus 324 ~v~Ar~L~~~i~---~~~~etG~P~i~f~D~~ 352 (749)
.+.+.++|++++ ..+.+.|.|.+.|.|..
T Consensus 57 ~~~~~~i~~~~l~~N~~l~e~g~g~l~y~e~~ 88 (138)
T PRK15329 57 PVAGDSIWRQILVINLELAENGEGTLAYIDAA 88 (138)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCceEEEcccC
Confidence 556899999999 89999999999998875
No 50
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=33.63 E-value=93 Score=26.45 Aligned_cols=32 Identities=6% Similarity=-0.027 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy8865 461 SKEAIKFADQSMEMICYYAYYASTELAEEKGR 492 (749)
Q Consensus 461 S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~ 492 (749)
.+++.++.-++++..-...+..|+.|||-||.
T Consensus 19 d~~vee~Ll~laddFv~~v~~~ac~lAKhR~s 50 (68)
T PF03847_consen 19 DPDVEELLLELADDFVDDVVSFACRLAKHRKS 50 (68)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46788888999999999999999999999985
No 51
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=29.02 E-value=1.2e+02 Score=25.86 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy8865 460 SSKEAIKFADQSMEMICYYAYYASTELAEEKGR 492 (749)
Q Consensus 460 ~S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~ 492 (749)
=+++|.++..++.|.+-....+.|++||+.+|.
T Consensus 20 ~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~ 52 (72)
T cd07981 20 LDPDVEELLLEIADDFVDDVVEDACRLAKHRKS 52 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999999985
No 52
>TIGR01255 pyr_form_ly_1 formate acetyltransferase 1. This model describes formate acetyltransferase 1. More distantly related putative formate acetyltransferases have also been identified, including formate acetyltransferase 2 from E. coli, which is excluded from this model.
Probab=23.60 E-value=4.5e+02 Score=32.57 Aligned_cols=164 Identities=19% Similarity=0.174 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecchhhhhCC-CCccceEeeeccccccccCCCCCcccccccccccchhhhc----cC--
Q psy8865 327 ALYLWRKILSMLFETGHPWITFKDACNIRSP-QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK----NG-- 399 (749)
Q Consensus 327 Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p-~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~v~----~g-- 399 (749)
..++.+..++....||.|-+.+-|.+ +..- ....|.+ =|.|...+-.. . -+.-+.+||++++. +|
T Consensus 365 Pe~F~~~~aev~~~~g~pq~~NDd~~-~~~~~a~DY~i~----gCVe~~~~Gk~--~-~~~ga~~NlaK~Le~aLn~G~d 436 (744)
T TIGR01255 365 PYSFKKFSASMSIKTSSIQYENDDTM-RPDGYGDDYAIA----CCVSPMDVGKN--M-QFFGARVNLAKAMLTAINGGVD 436 (744)
T ss_pred CHHHHHHHHHHHhcCCcCceecCHHH-HHHhhhcCeeEE----eeecCccCCCc--c-cCchHHHHHHHHHHHHHcCCcC
Confidence 36777788888888999977665543 3322 1222332 35565433211 0 12224567766653 11
Q ss_pred -----------------CCChHHHHHHHHHHHHH-------HHHHhhcc---CC--cHHHHHHHhhhcCCcccccchHHH
Q psy8865 400 -----------------KLDPIKLKKTIRIAMRM-------LDNVIDIN---YY--AVKKAKYSNLRHRPVGLGIMGFQD 450 (749)
Q Consensus 400 -----------------~~D~~~l~~~v~~avr~-------LD~vId~~---~y--p~~~~~~~n~~~R~IGlGv~Glad 450 (749)
-.|++++.+..+..+.. .+|+|+.. +. |+..+-.-..-.|..|.|+.|+++
T Consensus 437 ~~tg~qvgp~~~~~~~~~~~fdev~~a~~~ql~~~~~~~v~~~nii~~~h~ky~~~~~~sal~d~ci~r~~~~g~~Gls~ 516 (744)
T TIGR01255 437 EKHKDYVVPDIEPIRDEVLDYDTVMENFDKSLDWLADTYVDAMNIIHYMHDKYNYEASQMALHDTKVRRNMAFGIAGFSV 516 (744)
T ss_pred CcCCceeCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChhHHhhceecCchhcCCccceeeeee
Confidence 23566665555544443 24556542 22 333332222334556666666554
Q ss_pred H---HHHcC----------------------C-CCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q psy8865 451 C---LHIMK----------------------I-PYS--SKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWD 502 (749)
Q Consensus 451 ~---L~~lg----------------------i-~y~--S~ea~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~ 502 (749)
+ |+... . .|+ .+++-+++.++++. .+++...++.+.++.+.
T Consensus 517 vaDSLsAIK~~k~~~i~~~~~l~~dfe~~~~~PKyGNDdd~vD~ia~~v~~~-----------~~~~i~~~~~~rg~~~~ 585 (744)
T TIGR01255 517 AADSLSAIKYAKVKPIRDENGYIYDFEVEGDFPRYGNDDDRVDDIAVLVVEM-----------FHEKLAKHKTYRNAEAT 585 (744)
T ss_pred HHHHHHHHHhcccCCHHHHhhhhhccCcccCCCCCCCCChHHHHHHHHHHHH-----------HHHHHhCCCCCCCCccc
Confidence 3 54422 1 233 33343444444332 23444567788888888
Q ss_pred CCCCchh
Q psy8865 503 QGILPQD 509 (749)
Q Consensus 503 ~G~lp~d 509 (749)
.|.+++-
T Consensus 586 ~~~ltit 592 (744)
T TIGR01255 586 VSVLTIT 592 (744)
T ss_pred cceeeee
Confidence 7877664
No 53
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.34 E-value=3e+02 Score=29.07 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHHhhcCCCcccceEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHH-HHHhcCCceEEEC
Q psy8865 210 IPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFM-KRVIKKSTWTLFS 288 (749)
Q Consensus 210 vp~lk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm-~rv~~d~~W~Lf~ 288 (749)
||++.+.+.++.++.+.|.||-+..+.=- .+-.-|. +|.++.+ ....-
T Consensus 99 iPllhIidaTa~~ik~~g~kkvgLLgT~~------------------------------Tm~~~fY~~~l~~~g-ievvv 147 (230)
T COG1794 99 IPLLHIIDATAKAIKAAGAKKVGLLGTRF------------------------------TMEQGFYRKRLEEKG-IEVVV 147 (230)
T ss_pred CCeehHHHHHHHHHHhcCCceeEEeeccc------------------------------hHHhHHHHHHHHHCC-ceEec
Confidence 79999999999999998866655544210 0112233 3444443 55555
Q ss_pred CCCCCccchhhchHHHH-HHHHHHHhhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeee
Q psy8865 289 PYDVPDLHNKFGKEFEE-SYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSS 367 (749)
Q Consensus 289 P~~~p~L~d~yg~~Fe~-~Y~~ye~~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~S 367 (749)
|++. .-+++.+ +|.+.. .|.++ =-.|++|.++++...+.|--.|++
T Consensus 148 Pdd~------~q~~v~~iIy~El~----~G~~~----~~sr~~~~~ii~~l~~~Gae~vIl------------------- 194 (230)
T COG1794 148 PDDD------EQAEVNRIIYEELC----QGIVK----DASRELYLAVIERLAERGAEGVIL------------------- 194 (230)
T ss_pred CCHH------HHHHHHHHHHHHHh----cccch----HHHHHHHHHHHHHHHHcCCCEEEE-------------------
Confidence 5431 1112222 233321 24321 126999999999988877655543
Q ss_pred ccccccccCCCCC
Q psy8865 368 NLCTEITLNTSKN 380 (749)
Q Consensus 368 NlC~EI~l~~~~~ 380 (749)
=||||++--+..
T Consensus 195 -GCTEi~lll~~~ 206 (230)
T COG1794 195 -GCTEIPLLLSQD 206 (230)
T ss_pred -eccchheeecCC
Confidence 499999765543
Done!