Your job contains 1 sequence.
>psy8865
MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE
FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR
EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK
YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW
HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG
KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH
VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV
IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY
YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI
KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK
GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL
NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGY
NKNLQEIKNNKKCLINSEINDVNECESCQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8865
(749 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q886B0 - symbol:nrdA "Ribonucleoside-diphosphat... 2459 2.0e-255 1
UNIPROTKB|Q607W9 - symbol:nrdA "Ribonucleoside-diphosphat... 2456 4.1e-255 1
UNIPROTKB|Q48FF6 - symbol:nrdA "Ribonucleoside-diphosphat... 2453 8.5e-255 1
TIGR_CMR|CBU_1553 - symbol:CBU_1553 "ribonucleoside-dipho... 2413 1.5e-250 1
UNIPROTKB|Q5HXD4 - symbol:nrdA "Ribonucleoside-diphosphat... 886 1.3e-143 3
TIGR_CMR|CJE_0024 - symbol:CJE_0024 "ribonucleoside-dipho... 886 1.3e-143 3
POMBASE|SPAC1F7.05 - symbol:cdc22 "ribonucleoside reducta... 1268 3.2e-129 1
UNIPROTKB|O61065 - symbol:RNR1 "Ribonucleoside-diphosphat... 1238 4.8e-126 1
CGD|CAL0001524 - symbol:RNR1 species:5476 "Candida albica... 1233 1.6e-125 1
UNIPROTKB|P50648 - symbol:RNR1 "Ribonucleoside-diphosphat... 1233 1.6e-125 1
UNIPROTKB|Q5A0N3 - symbol:RNR1 "Ribonucleoside-diphosphat... 1233 1.6e-125 1
TAIR|locus:2052469 - symbol:RNR1 "ribonucleotide reductas... 1230 3.4e-125 1
UNIPROTKB|O15909 - symbol:RNR1 "Ribonucleoside-diphosphat... 1216 1.0e-123 1
ASPGD|ASPL0000074083 - symbol:AN4380 species:162425 "Emer... 1208 7.2e-123 1
UNIPROTKB|E1C4Q0 - symbol:E1C4Q0 "Ribonucleoside-diphosph... 992 1.7e-122 2
CGD|CAL0002354 - symbol:RNR3 species:5476 "Candida albica... 1185 2.8e-122 2
UNIPROTKB|Q59M54 - symbol:RNR3 "Ribonucleoside-diphosphat... 1185 2.8e-122 2
SGD|S000000872 - symbol:RNR1 "Major isoform of large subu... 1197 1.1e-121 1
UNIPROTKB|P23921 - symbol:RRM1 "Ribonucleoside-diphosphat... 1195 1.7e-121 1
UNIPROTKB|E2R8P1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1195 1.7e-121 1
UNIPROTKB|E9PD78 - symbol:RRM1 "Ribonucleoside-diphosphat... 1195 1.7e-121 1
UNIPROTKB|Q9UW15 - symbol:rnr-1 "Ribonucleoside-diphospha... 1194 2.2e-121 1
MGI|MGI:98180 - symbol:Rrm1 "ribonucleotide reductase M1"... 1192 3.6e-121 1
UNIPROTKB|Q5R919 - symbol:RRM1 "Ribonucleoside-diphosphat... 1190 5.8e-121 1
RGD|1592569 - symbol:Rrm1 "ribonucleotide reductase M1" s... 1186 1.5e-120 1
UNIPROTKB|F1MSF1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1181 5.2e-120 1
WB|WBGene00004391 - symbol:rnr-1 species:6239 "Caenorhabd... 1174 2.9e-119 1
UNIPROTKB|Q03604 - symbol:rnr-1 "Ribonucleoside-diphospha... 1174 2.9e-119 1
SGD|S000001328 - symbol:RNR3 "Minor isoform of the large ... 1166 2.0e-118 1
FB|FBgn0011703 - symbol:RnrL "Ribonucleoside diphosphate ... 1163 4.2e-118 1
ZFIN|ZDB-GENE-990415-247 - symbol:rrm1 "ribonucleotide re... 1151 7.9e-117 1
DICTYBASE|DDB_G0284071 - symbol:rnrA "ribonucleoside-diph... 1116 4.1e-113 1
UNIPROTKB|P50647 - symbol:RNR1 "Ribonucleoside-diphosphat... 1111 1.4e-112 1
UNIPROTKB|E9PL69 - symbol:RRM1 "Ribonucleoside-diphosphat... 1096 5.3e-111 1
UNIPROTKB|Q8SR37 - symbol:ECU10_0920 "Ribonucleoside-diph... 1092 1.4e-110 1
UNIPROTKB|F1SUZ5 - symbol:F1SUZ5 "Uncharacterized protein... 936 4.8e-94 1
UNIPROTKB|F5H861 - symbol:RRM1 "Ribonucleoside-diphosphat... 788 2.3e-78 1
UNIPROTKB|Q71XL1 - symbol:nrdA "Ribonucleoside-diphosphat... 612 2.6e-69 2
TIGR_CMR|SO_2415 - symbol:SO_2415 "ribonucleoside-diphosp... 635 5.4e-67 2
TIGR_CMR|CPS_2328 - symbol:CPS_2328 "ribonucleoside-dipho... 625 2.3e-66 2
TIGR_CMR|CHY_0676 - symbol:CHY_0676 "ribonucleoside-dipho... 325 1.1e-65 4
UNIPROTKB|P00452 - symbol:nrdA species:83333 "Escherichia... 614 2.6e-65 2
UNIPROTKB|Q9KSK0 - symbol:VC1256 "Ribonucleoside-diphosph... 604 7.7e-64 2
TIGR_CMR|VC_1256 - symbol:VC_1256 "ribonucleoside-diphosp... 604 7.7e-64 2
TIGR_CMR|NSE_0411 - symbol:NSE_0411 "ribonucleoside-dipho... 335 8.7e-64 3
TIGR_CMR|GSU_1871 - symbol:GSU_1871 "ribonucleoside-dipho... 297 1.8e-63 3
TIGR_CMR|DET_0623 - symbol:DET_0623 "ribonucleotide reduc... 314 1.5e-62 3
TIGR_CMR|BA_1371 - symbol:BA_1371 "ribonucleoside-diphosp... 539 9.9e-58 2
TIGR_CMR|ECH_0459 - symbol:ECH_0459 "ribonucleoside-dipho... 358 6.8e-52 3
UNIPROTKB|P39452 - symbol:nrdE species:83333 "Escherichia... 500 8.9e-52 2
UNIPROTKB|O53767 - symbol:nrdZ "Ribonucleoside-diphosphat... 261 3.6e-51 3
TIGR_CMR|APH_0331 - symbol:APH_0331 "ribonucleoside-dipho... 354 3.4e-50 2
UNIPROTKB|P0A5W8 - symbol:nrdE "Ribonucleoside-diphosphat... 480 1.1e-48 2
TIGR_CMR|SPO_3194 - symbol:SPO_3194 "ribonucleoside-dipho... 250 1.3e-42 4
TIGR_CMR|DET_0244 - symbol:DET_0244 "ribonucleotide reduc... 209 5.9e-40 3
UNIPROTKB|Q0C1X7 - symbol:HNE_1555 "Ribonucleoside-diphos... 244 1.3e-37 4
TIGR_CMR|DET_0345 - symbol:DET_0345 "ribonucleotide reduc... 295 2.5e-30 2
UNIPROTKB|H0YCY7 - symbol:RRM1 "Ribonucleoside-diphosphat... 262 1.5e-21 1
UNIPROTKB|I3LEK6 - symbol:I3LEK6 "Ribonucleoside-diphosph... 248 4.8e-20 1
UNIPROTKB|Q5LRJ1 - symbol:nrdJ "Ribonucleoside-diphosphat... 162 1.7e-16 4
TIGR_CMR|SPO_2136 - symbol:SPO_2136 "ribonucleoside-dipho... 162 1.7e-16 4
UNIPROTKB|E9PP77 - symbol:RRM1 "Ribonucleoside-diphosphat... 160 1.3e-10 1
>UNIPROTKB|Q886B0 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE016853 GenomeReviews:AE016853_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:NP_791496.1 ProteinModelPortal:Q886B0 GeneID:1183308
KEGG:pst:PSPTO_1671 PATRIC:19994588
BioCyc:PSYR223283:GJIX-1701-MONOMER Uniprot:Q886B0
Length = 970
Score = 2459 (870.7 bits), Expect = 2.0e-255, P = 2.0e-255
Identities = 463/712 (65%), Positives = 569/712 (79%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+TI +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW QGILP DS ++L ++RG KY+ V++ ESL+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG 922
>UNIPROTKB|Q607W9 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE017282 GenomeReviews:AE017282_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:YP_114078.1 ProteinModelPortal:Q607W9 GeneID:3104511
KEGG:mca:MCA1634 PATRIC:22607102 Uniprot:Q607W9
Length = 969
Score = 2456 (869.6 bits), Expect = 4.1e-255, P = 4.1e-255
Identities = 469/765 (61%), Positives = 597/765 (78%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG------KEIKQIDIPIKYKEYFSKFINKGIDNKLL 54
+E++ YS V ARLL+ +++E Q ++ +Y EYF ++ +G++ +LL
Sbjct: 212 IEQESNYSYVAARLLLDALRREALSFLGHGAVSATQDEMSERYGEYFKDYVKRGVELELL 271
Query: 55 NPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLS 114
+P+LA F+L L AL PERDLQFNYLGL+ LYDRYF+H IR E+PQ FFMR+AMGL+
Sbjct: 272 SPELARFDLQRLGEALKPERDLQFNYLGLQTLYDRYFIHSGDIRFELPQAFFMRVAMGLA 331
Query: 115 LNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+ E +RE+ AI+FY+LLSSF+FM STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +IK+
Sbjct: 332 IQEVDREERAIEFYDLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDDLDGIYSAIKD 391
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSK+AGGLGNDWT+VR +G+ IKGTNG+SQGV+PFLKV ND AVAVNQGGKRKGA+C
Sbjct: 392 NALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVC 451
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWH+DIEEF++LRKNTGDDRRRTHDMN A WVPDLFMKRV ++ WTLFSP D PD
Sbjct: 452 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEEREWTLFSPNDTPD 511
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+ G+ FE Y YE + G+IKL+K++ A+ LWRK+LSMLFETGHPW+ FKD CN+
Sbjct: 512 LHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGHPWLAFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIA 413
R QH G++HSSNLCTEITL+T+ NEI VCNLGS+NL H+ +G LD KL++TI
Sbjct: 572 RYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHITPDGALDTEKLQRTIATG 631
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
MRMLDNVIDINYY+V +A+ SNLRHRPVGLGIMGFQD L+ +++PY+S+EA+ FAD SME
Sbjct: 632 MRMLDNVIDINYYSVPQARRSNLRHRPVGLGIMGFQDALYKLRLPYASQEAVAFADLSME 691
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
+ YYA AS +LA E+GRYSS+DGSLW +GILP DS+ LLE+ RG YL+++ S++L+W
Sbjct: 692 AVSYYAIQASCDLAAERGRYSSFDGSLWSRGILPIDSIALLEEGRGG-YLQMDRSQTLDW 750
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
LR R++ GMRNSN +AIAPTATISNI GVS SIEPTY+NL +KSNLSGEFT +N YL
Sbjct: 751 NALRERVRTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVVNPYL 810
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
V++LK GLWD MI +LKY+DG++ +I RIP+ L+++YATAFEI W+IEAGS RQKW
Sbjct: 811 VRDLKTLGLWDAVMINDLKYYDGSVQKIERIPETLKQLYATAFEIDARWLIEAGSRRQKW 870
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSN-FEMGIDSVNL 712
+DQ+QSLN+Y++ SGKKLD YKLAW+RGLKTTYYLRS+ A + +KS F+ +++V
Sbjct: 871 LDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKTTYYLRSLGATHVEKSTAFDGKLNAVKT 930
Query: 713 DEI--SIKGYNKNLQEIKNN------KKCLINSEINDVNECESCQ 749
D I +I G + L+ + + K CLI D CE+CQ
Sbjct: 931 DPIDDAIPGL-RPLETVYADTRPAEPKACLI-----DDPTCEACQ 969
>UNIPROTKB|Q48FF6 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000058 GenomeReviews:CP000058_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 RefSeq:YP_275880.1 STRING:Q48FF6 GeneID:3557025
KEGG:psp:PSPPH_3738 PATRIC:19976913 HOGENOM:HOG000057036
ProtClustDB:PRK07207 Uniprot:Q48FF6
Length = 970
Score = 2453 (868.6 bits), Expect = 8.5e-255, P = 8.5e-255
Identities = 461/712 (64%), Positives = 569/712 (79%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E++P YS VTARLLM ++ E G ++ Y + ++ GI +LLN
Sbjct: 212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P LAEF+L L A+ ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct: 272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331
Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
E RE AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct: 332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV WTLFSP +VPDL
Sbjct: 452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511
Query: 296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
H+ GK F+E Y YE T+ GK+KLFK I A LWRK+LSMLFETGHPW+TFKD CN+
Sbjct: 512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL H+ NGKLD KLK+T+ +A+
Sbjct: 572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAV 631
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +AK SNLRHRPVGLGIMGFQD L++ IPY S A++FAD SME
Sbjct: 632 RMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEA 691
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
+ YYA AS +LA+E+G Y ++ GSLW +GILP DS ++L ++RG KY+ V++ E+L+W
Sbjct: 692 VSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWA 751
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
+R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct: 752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
++LK + LWD MI +LKY+DG++ QI RIP +L+++YATAFE+ WI++A S RQKWI
Sbjct: 811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
DQ+QSLN+YI+ SGKKLD TY++AW RGLKTTYYLR+++A +KS G
Sbjct: 871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG 922
>TIGR_CMR|CBU_1553 [details] [associations]
symbol:CBU_1553 "ribonucleoside-diphosphate reductase,
alpha subunit" species:227377 "Coxiella burnetii RSA 493"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0006260 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031419 InterPro:IPR005144 PROSITE:PS51161 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
OMA:PQARNSN TIGRFAMs:TIGR02506 HOGENOM:HOG000057036
ProtClustDB:PRK07207 RefSeq:NP_820536.1 ProteinModelPortal:Q83BF6
PRIDE:Q83BF6 GeneID:1209463 KEGG:cbu:CBU_1553 PATRIC:17931867
BioCyc:CBUR227377:GJ7S-1534-MONOMER Uniprot:Q83BF6
Length = 941
Score = 2413 (854.5 bits), Expect = 1.5e-250, P = 1.5e-250
Identities = 450/707 (63%), Positives = 567/707 (80%)
Query: 1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
+E +P Y+ VTARLL++ + +EV +++ DI Y E F FI GI+ + L+
Sbjct: 207 VENEPNYTYVTARLLLHDLYREVLNGLNLPQDLMHEDIAHYYPEAFKNFIRHGIETEHLH 266
Query: 56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
P L F+L+ L+ AL PERD QF YL L+ LYDRY +H + +RIE+PQ FFMR+AMGL+
Sbjct: 267 PNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGLAQ 326
Query: 116 NESN-REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKE 174
+E R + A++FYN+LSSF+FM STPTLFNSGT+ QLSSC+L+TVPD L GI+ ++K+
Sbjct: 327 SEGEARNQRAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGALKD 386
Query: 175 NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
NALLSKYAGGLGNDWT VR++G+ IKGTNG+S GV+PFL V + A+AVNQGGKRKGA+C
Sbjct: 387 NALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGAVC 446
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
AYLETWHMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV + WTLFSP +VPD
Sbjct: 447 AYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEVPD 506
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
LH+KFG+ FE +Y+ YE + G+I+ K ISAL LWRKILSMLFETGHPW+TFKDACNI
Sbjct: 507 LHDKFGEAFEIAYVAYEEKAHRGEIRS-KTISALSLWRKILSMLFETGHPWVTFKDACNI 565
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
RSPQQHVG+IHSSNLCTEITLNTS+ EI VCNLGSINL HMK+GKLD KL +T + A+
Sbjct: 566 RSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKTAI 625
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
RMLDNVIDINYY+V +A+ SNL+HRP+GLG+MGFQD L++ IPY+S+ A++FADQSME
Sbjct: 626 RMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSMET 685
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I YYA AS ELA+E+G Y +++ SLW QGILP DS++LL+K RG KY + N ++L+W
Sbjct: 686 ISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRG-KYFEQNTDQTLDWN 744
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
LR ++ GMRNSN +AIAPTATISNI G+S SIEPTY+NL +KSNLSGEFT IN YLV
Sbjct: 745 ALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYLV 804
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
+ELK + LWD M+ +LKY++G++ +I RIP +L+K+YATAFE+ P W++EA S RQKWI
Sbjct: 805 RELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKWI 864
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
DQ+QSLN+Y++ SGKKLD Y++AWLRGLKTTYYLRS+ A +K+
Sbjct: 865 DQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKA 911
>UNIPROTKB|Q5HXD4 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 886 (316.9 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 183/377 (48%), Positives = 251/377 (66%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G + + + +EYF K +G LL K +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG--MNRYN---HLREYFEKGEKEG--RILLGLK-EKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLH-IEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN 380
I SSNLCTEI NT N
Sbjct: 419 IRSSNLCTEIFQNTEPN 435
Score = 372 (136.0 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 86/209 (41%), Positives = 124/209 (59%)
Query: 379 KNE--IGVCNLGSINLT-LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSN 435
KN+ VCNL SINL+ ++ K +++ + A+RMLDNVID+N+Y +K K +N
Sbjct: 488 KNDGKTAVCNLASINLSKVYTKED------IERVVPTAIRMLDNVIDLNFYPHRKVKDTN 541
Query: 436 LRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSS 495
L+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG Y
Sbjct: 542 LKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGSYED 601
Query: 496 YDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAP 555
++GS W +GI P D K + + SE +W KLR ++KK GMRN +AIAP
Sbjct: 602 FEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMAIAP 660
Query: 556 TATISNIIGVSASIEPTYRNLHIKSNLSG 584
T++IS ++G + +IEP Y+ + NLSG
Sbjct: 661 TSSISILVGTTQTIEPVYKRKWFEQNLSG 689
Score = 182 (69.1 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 44/104 (42%), Positives = 67/104 (64%)
Query: 612 KYFDGNLSQISRI--PD---DLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS- 665
K+F+ NLS + + P+ D + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 681 KWFEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL 740
Query: 666 NK-SGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
+K SG L+E Y+LAW G+K+TYYLRS S + K + + I+
Sbjct: 741 DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIE 784
Score = 54 (24.1 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
Identities = 32/135 (23%), Positives = 63/135 (46%)
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
K++ +S++ K+ ++K+ +N A+ A+I N+ V E R + +
Sbjct: 469 KISTLDSIDGNKVYI-VEKY--KNDGKTAVCNLASI-NLSKVYTK-EDIERVVPTAIRML 523
Query: 584 GEFTEINRY---LVKE--LKKK----GLWDES-MIANLKYFDGNLSQISRIPDDLRKIYA 633
++N Y VK+ LK + G+ E+ M+A K + G+ +++I + + +I
Sbjct: 524 DNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISF 583
Query: 634 TAFEISPNWIIEAGS 648
A S N +E GS
Sbjct: 584 EAINASSNLALEKGS 598
>TIGR_CMR|CJE_0024 [details] [associations]
symbol:CJE_0024 "ribonucleoside-diphosphate reductase,
alpha subunit" species:195099 "Campylobacter jejuni RM1221"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 886 (316.9 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 183/377 (48%), Positives = 251/377 (66%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P ++ V ARL ++ + K+V G + + + +EYF K +G LL K +++L
Sbjct: 71 PNWTFVAARLFLFDLYKKVNG--MNRYN---HLREYFEKGEKEG--RILLGLK-EKYDLD 122
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLH-IEGIRIEMPQFFFMRIAMGLSLNESNREKC 123
L+ + PERD+QF YLG+K LYDRY + +G+ IE+PQ FM IAM L+ NE N ++
Sbjct: 123 DLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEW 182
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAG 183
A KFY+L+S F M +TPTL N+ T R QLSSCY+ + PD++ GIF+S +E ALLSK+ G
Sbjct: 183 AKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGG 242
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMD 243
G+G DW++VR++G I G + G+IPFLK+ ND+AVAV+Q G RKGAI Y+E WHMD
Sbjct: 243 GIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMD 302
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
I +FI+LRKN+G++RRR H++ A+W+ DLFMKRV WTLF P D DL + +G+ F
Sbjct: 303 ISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPADTADLCDLYGEAF 362
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
E+ Y YE + K + + A LW+KIL FETG P++ FKD+ N +P HVGI
Sbjct: 363 EKRYEEYEKDESITK----EIVEAKELWKKILLNYFETGLPFLCFKDSANRANPNAHVGI 418
Query: 364 IHSSNLCTEITLNTSKN 380
I SSNLCTEI NT N
Sbjct: 419 IRSSNLCTEIFQNTEPN 435
Score = 372 (136.0 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 86/209 (41%), Positives = 124/209 (59%)
Query: 379 KNE--IGVCNLGSINLT-LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSN 435
KN+ VCNL SINL+ ++ K +++ + A+RMLDNVID+N+Y +K K +N
Sbjct: 488 KNDGKTAVCNLASINLSKVYTKED------IERVVPTAIRMLDNVIDLNFYPHRKVKDTN 541
Query: 436 LRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSS 495
L+ R +GLG+MG L KI + S E + D+ ME I + A AS+ LA EKG Y
Sbjct: 542 LKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISFEAINASSNLALEKGSYED 601
Query: 496 YDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAP 555
++GS W +GI P D K + + SE +W KLR ++KK GMRN +AIAP
Sbjct: 602 FEGSNWSKGIFPIDVASPKAKALTLREGLFDQSEC-DWVKLREKVKKDGMRNGYLMAIAP 660
Query: 556 TATISNIIGVSASIEPTYRNLHIKSNLSG 584
T++IS ++G + +IEP Y+ + NLSG
Sbjct: 661 TSSISILVGTTQTIEPVYKRKWFEQNLSG 689
Score = 182 (69.1 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 44/104 (42%), Positives = 67/104 (64%)
Query: 612 KYFDGNLSQISRI--PD---DLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYIS- 665
K+F+ NLS + + P+ D + Y A+E+ +++A +VR KWIDQ QSLNI++S
Sbjct: 681 KWFEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL 740
Query: 666 NK-SGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGID 708
+K SG L+E Y+LAW G+K+TYYLRS S + K + + I+
Sbjct: 741 DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIE 784
Score = 54 (24.1 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
Identities = 32/135 (23%), Positives = 63/135 (46%)
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
K++ +S++ K+ ++K+ +N A+ A+I N+ V E R + +
Sbjct: 469 KISTLDSIDGNKVYI-VEKY--KNDGKTAVCNLASI-NLSKVYTK-EDIERVVPTAIRML 523
Query: 584 GEFTEINRY---LVKE--LKKK----GLWDES-MIANLKYFDGNLSQISRIPDDLRKIYA 633
++N Y VK+ LK + G+ E+ M+A K + G+ +++I + + +I
Sbjct: 524 DNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQISF 583
Query: 634 TAFEISPNWIIEAGS 648
A S N +E GS
Sbjct: 584 EAINASSNLALEKGS 598
>POMBASE|SPAC1F7.05 [details] [associations]
symbol:cdc22 "ribonucleoside reductase large subunit
Cdc22" species:4896 "Schizosaccharomyces pombe" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0006213 "pyrimidine nucleoside metabolic
process" evidence=IC] [GO:0007090 "regulation of S phase of mitotic
cell cycle" evidence=IMP] [GO:0009212 "pyrimidine
deoxyribonucleoside triphosphate biosynthetic process" evidence=IC]
[GO:0009216 "purine deoxyribonucleoside triphosphate biosynthetic
process" evidence=IC] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=ISS] [GO:0042278 "purine nucleoside metabolic
process" evidence=IC] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326
PomBase:SPAC1F7.05 Pfam:PF03477 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006260 GO:GO:0007090
GO:GO:0090329 GO:GO:0006213 GO:GO:0009263 KO:K10807 GO:GO:0042278
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035 OMA:PQARNSN
TIGRFAMs:TIGR02506 OrthoDB:EOG480N4T EMBL:X65116 PIR:S34807
PIR:S62577 RefSeq:NP_594491.1 ProteinModelPortal:P36602 SMR:P36602
IntAct:P36602 STRING:P36602 PRIDE:P36602 EnsemblFungi:SPAC1F7.05.1
GeneID:2541695 KEGG:spo:SPAC1F7.05 NextBio:20802788 GO:GO:0009216
GO:GO:0009212 Uniprot:P36602
Length = 811
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 286/743 (38%), Positives = 438/743 (58%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYK-EYFSKFINKGIDNKLLNPKL 58
K P Y+ + AR+ + + K+ VF ++Q+ + K + + I+ I + ++ K
Sbjct: 70 KHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMKHK- 128
Query: 59 AEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNES 118
L +A++ +RD +N+ G K L Y L I+G E PQ MR+A+G+ +
Sbjct: 129 -----DELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDI 183
Query: 119 NREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENAL 177
+ AI+ YNL+S F ++PTLFN+GT R QLSSC+L T+ DD + GI++++K A+
Sbjct: 184 ---EAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAM 240
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAY 236
+SK AGG+G + +R+ GS I GTNG S G++P ++V N+ A V+QGG KR GA AY
Sbjct: 241 ISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAY 300
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
LE WH D+ +F+ELRK G++ R +M A+W+PDLFM+RV + WT F P + P L
Sbjct: 301 LEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLA 360
Query: 297 NKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRS 356
+ +G EF Y YE + + G+ + + A +W IL ETG+P++ +KD+CN +S
Sbjct: 361 DVWGDEFVALYEKYEKENR-GR----RSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKS 415
Query: 357 PQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRM 416
Q++VG I SNLCTEI +S +E+ VCNL S+ L +K+GK + KL +++ R
Sbjct: 416 NQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTRN 475
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +ID+NYY V +A+ SN+RHRPVGLG+ G D +++P+ S A K Q E I
Sbjct: 476 LNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIY 535
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ A AS E+A+ +G Y SY+GS QGIL D VN ++ +W +L
Sbjct: 536 HAALEASCEIAQVEGTYESYEGSPASQGILQYDMWN------------VNPTDLWDWAEL 583
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+ +I K G+RNS VA PTA+ S I+G + EP N++ + LSGEF +N +L+K+
Sbjct: 584 KEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKD 643
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L ++ LW+E M L DG++ I IP DL+ +Y T +EIS +I+ + R +IDQ
Sbjct: 644 LVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQ 703
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
SQSLNI++ + S K+ + W +GLKT YYLR+++A+ A K +D V L
Sbjct: 704 SQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFT----VDPVALRAR 759
Query: 716 SIKGYNKNLQEIKNNKKCLINSE 738
+ + +N + + N K I++E
Sbjct: 760 NEESNEENKKPVIKNGKAEISAE 782
>UNIPROTKB|O61065 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
chain" species:5807 "Cryptosporidium parvum" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AF043243 ProteinModelPortal:O61065
SMR:O61065 STRING:O61065 Uniprot:O61065
Length = 803
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 282/708 (39%), Positives = 416/708 (58%)
Query: 46 NKGIDNKLLNPKLAEF---NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMP 102
N+G L++ + +F N +++ + +D +++Y K L Y L I+ +E P
Sbjct: 106 NQGCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERP 165
Query: 103 QFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP 162
Q MR++ G+ + + A++ Y LLS F +TPTLFNSGT R Q+SSC+L +P
Sbjct: 166 QHLLMRVSCGIHCGDI---EAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIP 222
Query: 163 DD-LYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAV 221
+D + GIF+++ + A +SK AGGLG + +R GS I+GTNGRS G+IP L+V ND A
Sbjct: 223 EDSINGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTAR 282
Query: 222 AVNQGG-KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIK 280
++QGG KRKGAI YLE WH+D+ EFIE+RKN G + R D+ A+WVPDLFM+RV K
Sbjct: 283 YIDQGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEK 342
Query: 281 KSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFE 340
WTL P + L + +G +F++ Y YE Q + G+ K + A LW IL E
Sbjct: 343 DQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQGR-GR----KTMKAQKLWFLILQAQIE 397
Query: 341 TGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM-KNG 399
TG P+I +KDA N +S Q+++G I SSNLCTEI TS +E+ VCNL SI L + KN
Sbjct: 398 TGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNN 457
Query: 400 K-LDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIP 458
K D KLK+ ++ R L+ +ID+ YY++K+ K SNLRHRP+G+GI G DC ++++P
Sbjct: 458 KTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMP 517
Query: 459 YSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKER 518
Y S+ A K Q E+I Y A AS ELAE+ G Y +Y GS +GIL D +
Sbjct: 518 YESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD-- 575
Query: 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHI 578
S +W L++RI K G+RNS ++ PTA+ S I+G + S EP N++
Sbjct: 576 ---------SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYH 626
Query: 579 KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI 638
+ LSGEF +N +L+ +L + GLWD+ + N+ +G++ I IP+D+R++Y T +EI
Sbjct: 627 RRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEI 686
Query: 639 SPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANY 697
+I+ + R ++ QSQSLNI++ N + KL + W +GLKT YYLR+ SA
Sbjct: 687 KQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSAT- 745
Query: 698 AKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNEC 745
+ F +D+ +K K ++ NK+ + E + C
Sbjct: 746 -RPIQF-------TVDQQLLKSETKEKDSLETNKRQALEPEAQKLIAC 785
>CGD|CAL0001524 [details] [associations]
symbol:RNR1 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;NAS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IEA] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 289/760 (38%), Positives = 440/760 (57%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P Y+ + AR+ + + K+ K+ ++ + Y EY + G+ + +++ + + +
Sbjct: 72 PDYAVLAARIAVSNLHKQTT-KQYSKVSKDL-Y-EYINP--KTGLHSPMISKETYDIIME 126
Query: 65 L---LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
L++A++ +RD +NY G K L Y L I G E PQ MR+A+G+ N+ R
Sbjct: 127 HEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDIPR- 185
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
I+ YNL+S F +P LFN+GT R Q+SSC+L + DD + GI++++K AL+SK
Sbjct: 186 --VIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +RS G+ I GTNG S G+IP ++V N+ A V+QGG KR GA YLE
Sbjct: 244 SAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +FI++RKN G + R D+ A+W+PDLFMKRV + WTLFSP + P L + +
Sbjct: 304 WHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVY 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFEE Y YE + + G+ + I A LW IL ETG P++ +KD+CN +S Q+
Sbjct: 364 GDEFEELYTKYEKENR-GR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQK 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPI----KLKKTIRIAMR 415
++GII SSNLC EI ++ +E+ VCNL SI L ++N + KL + ++ R
Sbjct: 419 NLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQVTKVVTR 478
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
L+ VID N+Y V +A+ SN+RHRP+ LG+ G D +++P+ S+EA + Q E I
Sbjct: 479 NLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETI 538
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+ A AS ELA+E+G Y +Y GS QG+L D L ++ +E +W
Sbjct: 539 YHAAVEASIELAKEEGAYETYPGSPASQGLLQFD---LWNRKP---------TELWDWDT 586
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
L+ + K GMRNS VA PTA+ S I+G + EP N++ + L+GEF +N YL+K
Sbjct: 587 LKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLK 646
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+L G+W+++M +++ +G++ + IPD+++ +Y T +EIS II+ + R +ID
Sbjct: 647 DLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFID 706
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSV---- 710
QSQSLNI+I + + KL + W +GLKT YYLR+ +A+ A + + I
Sbjct: 707 QSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIAETAGHT 766
Query: 711 --NLDEISIKGY-NKNLQEIKNNKKCLINSEINDVNECES 747
NLD+++IK Y NK E +N S + ES
Sbjct: 767 VANLDKLNIKKYVNKGRVESENTSDAPYKSPSTEPTSLES 806
>UNIPROTKB|P50648 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:57267 "Plasmodium falciparum Dd2" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:U01323 ProteinModelPortal:P50648 SMR:P50648
Uniprot:P50648
Length = 806
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 272/632 (43%), Positives = 382/632 (60%)
Query: 74 RDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSS 133
RD ++Y G K L Y L I IE PQ MR+++G+ +++ ++ A++ Y+L+S
Sbjct: 137 RDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQ 193
Query: 134 FNFMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKENALLSKYAGGLGNDWTQV 192
F +TPTLFNSGT R Q+SSC+L S D + GIFE++K+ AL+SK AGG+G +
Sbjct: 194 KYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDI 253
Query: 193 RSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMDIEEFIELR 251
R S I+GTNG S G++P L+V ND A V+QGG KRKG+ Y+E WH DI EF++LR
Sbjct: 254 RGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLR 313
Query: 252 KNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYE 311
KN G + R D+ A+WVPDLFMKRV + WTL P + P L +G+EFE+ Y YE
Sbjct: 314 KNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYE 373
Query: 312 NQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCT 371
+ +GK K + A LW IL ETG P++ +KD+CN +S Q+++G I SNLC
Sbjct: 374 EEN-MGK----KTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCC 428
Query: 372 EITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVK 429
EI TS +E+ VCNL SI L + ++ + + KL + +I R LD +I+ NYY VK
Sbjct: 429 EIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVK 488
Query: 430 KAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEE 489
+AK SN RHRP+G+G+ G D +++ PY S A + + E + Y A S ELA
Sbjct: 489 EAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASI 548
Query: 490 KGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSN 549
G Y SY GS QGIL D + + +KY +W +L+ +I+K G+RNS
Sbjct: 549 HGPYESYQGSPASQGILQFD---MWNAKVDNKYW--------DWDELKAKIRKHGLRNSL 597
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+A PTA+ S I+G + S EP N++ + LSGEF +N +L+K+L +GLWDE M
Sbjct: 598 LLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQ 657
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSG 669
L +G++ IS IPDDL+++Y T +EI II+ + R +IDQSQSLNIYI +
Sbjct: 658 QLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTF 717
Query: 670 KKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
KL + W +GLKT YYLR+ +A A K
Sbjct: 718 AKLSSMHFYGWEKGLKTGAYYLRTQAATDAIK 749
>UNIPROTKB|Q5A0N3 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] [GO:0009267 "cellular response
to starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 289/760 (38%), Positives = 440/760 (57%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P Y+ + AR+ + + K+ K+ ++ + Y EY + G+ + +++ + + +
Sbjct: 72 PDYAVLAARIAVSNLHKQTT-KQYSKVSKDL-Y-EYINP--KTGLHSPMISKETYDIIME 126
Query: 65 L---LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
L++A++ +RD +NY G K L Y L I G E PQ MR+A+G+ N+ R
Sbjct: 127 HEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDIPR- 185
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
I+ YNL+S F +P LFN+GT R Q+SSC+L + DD + GI++++K AL+SK
Sbjct: 186 --VIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +RS G+ I GTNG S G+IP ++V N+ A V+QGG KR GA YLE
Sbjct: 244 SAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +FI++RKN G + R D+ A+W+PDLFMKRV + WTLFSP + P L + +
Sbjct: 304 WHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVY 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFEE Y YE + + G+ + I A LW IL ETG P++ +KD+CN +S Q+
Sbjct: 364 GDEFEELYTKYEKENR-GR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQK 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPI----KLKKTIRIAMR 415
++GII SSNLC EI ++ +E+ VCNL SI L ++N + KL + ++ R
Sbjct: 419 NLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQVTKVVTR 478
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
L+ VID N+Y V +A+ SN+RHRP+ LG+ G D +++P+ S+EA + Q E I
Sbjct: 479 NLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETI 538
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKK 535
+ A AS ELA+E+G Y +Y GS QG+L D L ++ +E +W
Sbjct: 539 YHAAVEASIELAKEEGAYETYPGSPASQGLLQFD---LWNRKP---------TELWDWDT 586
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVK 595
L+ + K GMRNS VA PTA+ S I+G + EP N++ + L+GEF +N YL+K
Sbjct: 587 LKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLK 646
Query: 596 ELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWID 655
+L G+W+++M +++ +G++ + IPD+++ +Y T +EIS II+ + R +ID
Sbjct: 647 DLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFID 706
Query: 656 QSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSV---- 710
QSQSLNI+I + + KL + W +GLKT YYLR+ +A+ A + + I
Sbjct: 707 QSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIAETAGHT 766
Query: 711 --NLDEISIKGY-NKNLQEIKNNKKCLINSEINDVNECES 747
NLD+++IK Y NK E +N S + ES
Sbjct: 767 VANLDKLNIKKYVNKGRVESENTSDAPYKSPSTEPTSLES 806
>TAIR|locus:2052469 [details] [associations]
symbol:RNR1 "ribonucleotide reductase 1" species:3702
"Arabidopsis thaliana" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS;IMP] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0046686 "response
to cadmium ion" evidence=IEP] [GO:0009202 "deoxyribonucleoside
triphosphate biosynthetic process" evidence=IMP] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0007010 "cytoskeleton organization"
evidence=RCA] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006260 EMBL:AC007019 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 GO:GO:0009202 EMBL:AF092841
EMBL:AY035080 EMBL:BT008573 IPI:IPI00525243 PIR:B84605 PIR:T51813
RefSeq:NP_179770.1 UniGene:At.115 ProteinModelPortal:Q9SJ20
SMR:Q9SJ20 STRING:Q9SJ20 PaxDb:Q9SJ20 PRIDE:Q9SJ20
EnsemblPlants:AT2G21790.1 GeneID:816715 KEGG:ath:AT2G21790
GeneFarm:2079 TAIR:At2g21790 HOGENOM:HOG000057035 InParanoid:Q9SJ20
OMA:PQARNSN PhylomeDB:Q9SJ20 ProtClustDB:PLN02437
Genevestigator:Q9SJ20 GermOnline:AT2G21790 TIGRFAMs:TIGR02506
Uniprot:Q9SJ20
Length = 816
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 296/772 (38%), Positives = 430/772 (55%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF--- 61
P Y+ + AR+ + + K K K IK Y G+ + L+ + E
Sbjct: 72 PDYASLAARIAVSNLHKNT--K--KSFSETIKDMFYHVND-RSGLKSPLIADDVFEIIMQ 126
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N + L + ++ +RD +++Y G K L Y L ++G +E PQ MR+A+G+ ++ +
Sbjct: 127 NAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS- 185
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
I+ Y+L+S F ++PTLFN+GT R QLSSC+L + DD + GI+E++KE A++SK
Sbjct: 186 --VIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +R+ GS I+GTNG S G++P L+V ND A V+QGG KRKGA YLE
Sbjct: 244 SAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH D+ EF+ELRKN G + R D+ A+W+PDLFM+RV W+LF P + P L + +
Sbjct: 304 WHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLADCW 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFE Y YE + GK K K + A LW +IL+ ETG P++ FKD+CN +S QQ
Sbjct: 364 GAEFETLYTKYERE---GKAK--KVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQ 418
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL--------------------TLHMKNG 399
++G I SSNLCTEI TS E VCNL SI L +L KN
Sbjct: 419 NLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNR 478
Query: 400 KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPY 459
D KL + L+ +ID+NYY V+ AK SN+RHRP+G+G+ G D ++ +P+
Sbjct: 479 YFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPF 538
Query: 460 SSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERG 519
S EA + E I Y+A ASTELA G Y +Y GS +GIL D ++ +R
Sbjct: 539 DSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRW 598
Query: 520 SKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIK 579
+W LR+ I K G+RNS VA PTA+ S I+G + EP N++ +
Sbjct: 599 ------------DWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSR 646
Query: 580 SNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEIS 639
LSGEF +N++L+ +L GLW ++ L +G++ ++ IPDDL+ IY T +EI
Sbjct: 647 RVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIK 706
Query: 640 PNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
+++ + R +IDQSQSLNI++ + KL + W +GLKT YYLRS +A A
Sbjct: 707 QRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADA 766
Query: 699 KKSNFEMGIDSVNLDEI-SIKGYNKNLQEIKNNKKCL-INSEINDVNECESC 748
K +D+ L E S+ +K ++E N K + + + EC +C
Sbjct: 767 IKFT----VDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814
>UNIPROTKB|O15909 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5702 "Trypanosoma brucei brucei" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:U80910 ProteinModelPortal:O15909 SMR:O15909
EuPathDB:TriTrypDB:Tb11.02.5720 EuPathDB:TriTrypDB:Tb427tmp.02.5720
Uniprot:O15909
Length = 838
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 275/707 (38%), Positives = 410/707 (57%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y + RL + + K + + ++ +K I +L + +A +
Sbjct: 75 KHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD--IANKH 132
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIE---GIR--IEMPQFFFMRIAMGLSLNE 117
+ L + ERD F Y G K L Y L + G+ +E PQ F+R+A+G+ +
Sbjct: 133 SAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALGIHGED 192
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
R K + Y+ +S F +TPTLFN+GT Q+SSC+L + +D + GI++++K+ A
Sbjct: 193 LERVK---ETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQCA 249
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G +R+ GS I GTNG S G++P L+V N+ A V+QGG KRKGA
Sbjct: 250 IISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAFAI 309
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI F+ L+KNTG + +R D+ +W+PDLFM+RV TWTL P P L
Sbjct: 310 YLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAPFL 369
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EF + Y YE + + G + I A LW IL ETG P++ +KDACN +
Sbjct: 370 SDCYGQEFTDLYERYEREGR-G----VRTIQAQELWFLILESQVETGVPFMLYKDACNFK 424
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMR 415
S Q+++G I SNLCTEI TS++E+ VCNL SI L +K+G D + LK+ ++ R
Sbjct: 425 SNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFDYVALKEVTKVVTR 484
Query: 416 MLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMI 475
L+ VID N+Y V +A+YSNLRHRPVG+G+ G D ++ +P++ EA K Q E I
Sbjct: 485 NLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHPEAKKLNRQIFETI 544
Query: 476 CYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESL-NWK 534
A ASTELAE+ G Y ++ GS +G L D + RG V+ L +W
Sbjct: 545 YIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNEDSVHSHCGLWDWD 604
Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
L+ R+ K GMRNS +A PTA+ S I+G + IEP N++++ LSGEF +N++LV
Sbjct: 605 SLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLV 664
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
KEL + LW++ M + +G++S I IP+ +R++Y +EI +I+ + R ++I
Sbjct: 665 KELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAADRGRYI 724
Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKK 700
DQSQSLN++++ + +L + +W +GLKT YYLRS A A K
Sbjct: 725 DQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771
>ASPGD|ASPL0000074083 [details] [associations]
symbol:AN4380 species:162425 "Emericella nidulans"
[GO:0043173 "nucleotide salvage" evidence=RCA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;RCA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0090329 "regulation of DNA-dependent DNA replication"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0006260
EMBL:BN001303 EMBL:AACD01000076 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
OrthoDB:EOG480N4T RefSeq:XP_661984.1 ProteinModelPortal:Q5B500
SMR:Q5B500 STRING:Q5B500 EnsemblFungi:CADANIAT00006078
GeneID:2872173 KEGG:ani:AN4380.2 Uniprot:Q5B500
Length = 865
Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
Identities = 262/636 (41%), Positives = 388/636 (61%)
Query: 66 LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAI 125
L++A++ +RD +N+ G K L Y L ++G E PQ MR+A+G+ N+ R AI
Sbjct: 145 LNSAIVYDRDFNYNFFGFKTLERSYLLRLDGKIAERPQHLLMRVAVGIHGNDIER---AI 201
Query: 126 KFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGG 184
+ YNL+S F ++PTLFN+GT + QL+SC+L + +D + GI++++K A++SK AGG
Sbjct: 202 ETYNLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTLKTCAMISKTAGG 261
Query: 185 LGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMD 243
+G + ++R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH D
Sbjct: 262 IGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHAD 321
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEF 303
+ EF++LRKN G + R D+ A+W PDLFMKRV WTLF P + P L + +G EF
Sbjct: 322 VFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGDEF 381
Query: 304 EESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI 363
+ Y YE + + G+ + I A LW IL ETG+P++ +KDACN +S Q+++G
Sbjct: 382 DALYEQYEKEGR-GR----RTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGT 436
Query: 364 IHSSNLCTEITLNTSKNEIGVCNLGSINLTLHM--KNGKLDPIKLKKTIRIAMRMLDNVI 421
I SSNLCTEI T+ +E+ VCNL S+ L + G+ D KL + +++ +R L+ +I
Sbjct: 437 IRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDASRGEYDFGKLHEVVQVLVRNLNKII 496
Query: 422 DINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYY 481
DINYY V +AK SN RHRP+ LG+ G D +++P+ S EA + Q E I + A
Sbjct: 497 DINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEAKQLNIQIFETIYHAALT 556
Query: 482 ASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIK 541
AS+ LA+E G Y SY+GS QGIL D ER ++ +W L+ +I
Sbjct: 557 ASSNLAKEDGPYESYEGSPVSQGILQYDMW-----ER-------TPTDLWDWDALKAKIA 604
Query: 542 KFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKG 601
+ G+RNS VA PTA+ S I+G + EP N++ + L+GEF +N +L+K+L G
Sbjct: 605 QTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 664
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLN 661
LW ++M + G++ I IPDD++ +Y T +EIS I+E + R +IDQSQSLN
Sbjct: 665 LWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEISQRRILEMAADRGAYIDQSQSLN 724
Query: 662 IYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISAN 696
I++ + K+ + W GLKT YYLR+++A+
Sbjct: 725 IHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 760
>UNIPROTKB|E1C4Q0 [details] [associations]
symbol:E1C4Q0 "Ribonucleoside-diphosphate reductase"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:AADN02055234 EMBL:AADN02055235 EMBL:AADN02055236
IPI:IPI00580561 Ensembl:ENSGALT00000028034 Uniprot:E1C4Q0
Length = 784
Score = 992 (354.3 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 236/627 (37%), Positives = 357/627 (56%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKLA 59
K P Y+ + AR+ + + KE K++ D+ Y + K I + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKET--KKVFS-DVMDDLYNYINPHNGKHSPMISKETLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I E PQ MR+A+G+ N+ +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVAVGIHKNDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ LYE+ K G+++ + + A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEK---LYESYEKQGRVR--RVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL SI L +++ + D KL + ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFKKLAEVTKVIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A+ SN RHRP+G+G+ G D +M+ P+ S EA + Q E I
Sbjct: 477 LNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGS-KYLKVNMSESLNWKK 535
Y A AS ELAE++G Y +Y+GS +GIL D + + K LK ++ W
Sbjct: 537 YGALEASCELAEQQGPYETYEGSPVSKGILQYDMWNVTPSDLWDWKALKEKIANG--WLS 594
Query: 536 LRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKS-NLSGEFTEINRYLV 594
L F ++ C A + +++ I + H+ + +L + TE +
Sbjct: 595 L------FLWLHTGC-AHPLGSVLTDFCVCELRISDLFLEFHVVNPHLLKDLTERGLWN- 646
Query: 595 KELKKKGLWDESMIANLKYFDGNLSQI 621
+E+K + + I N+ +L Q+
Sbjct: 647 EEMKNQIIAHNGSIQNISEIPADLKQL 673
Score = 233 (87.1 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 58/170 (34%), Positives = 94/170 (55%)
Query: 580 SNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEIS 639
S+L EF +N +L+K+L ++GLW+E M + +G++ IS IP DL+++Y T +EIS
Sbjct: 622 SDLFLEFHVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEIS 681
Query: 640 PNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
+++ + R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A A
Sbjct: 682 QKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPA--A 739
Query: 699 KKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
F L++ ++ K +E K K + + + +EC C
Sbjct: 740 NPIQF-------TLNKEKLREREKASEEEKERNKAAMVCSLENRDECMMC 782
Score = 38 (18.4 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 575 NLHIKSNLSGEFTEINRYLVKELKKKGLW 603
N+HI G+ T ++ Y K+ K G++
Sbjct: 703 NIHIAEPNYGKLTSMHFYGWKQGLKTGMY 731
>CGD|CAL0002354 [details] [associations]
symbol:RNR3 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1185 (422.2 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 264/679 (38%), Positives = 399/679 (58%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + + L + RD Y G+K L Y L I+G E+PQ+ FMR+A+G+ N
Sbjct: 120 KVVKKHGEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQN 179
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ N + Y+L+S F+ ++PTL+N+G+ + LSSC+L + DD + GIF+++ E
Sbjct: 180 DIN---AIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEA 236
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
AL+SK +GG+G +RS GS I TNG S G++P L+V N+ A V+QGG KR GA
Sbjct: 237 ALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFA 296
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI + +E+RKN G++ RT D+ +W+PDLFMKRV + S WTLFSP +
Sbjct: 297 IYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVG 356
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G+EFE+ Y YE++ G K+SA LW IL ETG P++ +KDACN
Sbjct: 357 LSDVYGEEFEKLYCKYESEG-FGT-----KVSAHKLWLAILHSQTETGGPYMLYKDACNT 410
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK----LDPIKLKKTI 410
+S Q+++G I SSNLC EI +S E VCNL S+ L ++K + D KL
Sbjct: 411 KSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSVT 470
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
++ R L+ VID+ Y V+ A+YSN RHRP+ LG+ G D +++P+ S A Q
Sbjct: 471 KVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQ 530
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E I + A AS ELA ++G Y ++ GS +GIL D K K S
Sbjct: 531 IFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFDMWK--HKP----------SPM 578
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
+W L++ I+ FG+RNS VA PTA+ S I+G + EP NL+ + L+GE+ +N
Sbjct: 579 YDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVN 638
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
+YL+K+L G+WD +M + +G++ I IPD+++++Y T +E+S II+ + R
Sbjct: 639 KYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADR 698
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDS 709
K++DQSQS+NI++ N + KL + AW +GLKT YYLR+ +A+ A + +D+
Sbjct: 699 GKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRA----IQFTVDA 754
Query: 710 VNLDEISIKGYNKNLQEIK 728
+++ K K+L+ K
Sbjct: 755 KEAEKVGTKVPQKSLKRKK 773
Score = 38 (18.4 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 735 INSEINDVNECESC 748
I I D+ C+SC
Sbjct: 801 ITCNIEDLESCQSC 814
>UNIPROTKB|Q59M54 [details] [associations]
symbol:RNR3 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1185 (422.2 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 264/679 (38%), Positives = 399/679 (58%)
Query: 57 KLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
K+ + + L + RD Y G+K L Y L I+G E+PQ+ FMR+A+G+ N
Sbjct: 120 KVVKKHGEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQN 179
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ N + Y+L+S F+ ++PTL+N+G+ + LSSC+L + DD + GIF+++ E
Sbjct: 180 DIN---AIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEA 236
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
AL+SK +GG+G +RS GS I TNG S G++P L+V N+ A V+QGG KR GA
Sbjct: 237 ALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFA 296
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
Y+E WH DI + +E+RKN G++ RT D+ +W+PDLFMKRV + S WTLFSP +
Sbjct: 297 IYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVG 356
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L + +G+EFE+ Y YE++ G K+SA LW IL ETG P++ +KDACN
Sbjct: 357 LSDVYGEEFEKLYCKYESEG-FGT-----KVSAHKLWLAILHSQTETGGPYMLYKDACNT 410
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK----LDPIKLKKTI 410
+S Q+++G I SSNLC EI +S E VCNL S+ L ++K + D KL
Sbjct: 411 KSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSVT 470
Query: 411 RIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQ 470
++ R L+ VID+ Y V+ A+YSN RHRP+ LG+ G D +++P+ S A Q
Sbjct: 471 KVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQ 530
Query: 471 SMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSES 530
E I + A AS ELA ++G Y ++ GS +GIL D K K S
Sbjct: 531 IFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFDMWK--HKP----------SPM 578
Query: 531 LNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEIN 590
+W L++ I+ FG+RNS VA PTA+ S I+G + EP NL+ + L+GE+ +N
Sbjct: 579 YDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVN 638
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
+YL+K+L G+WD +M + +G++ I IPD+++++Y T +E+S II+ + R
Sbjct: 639 KYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADR 698
Query: 651 QKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDS 709
K++DQSQS+NI++ N + KL + AW +GLKT YYLR+ +A+ A + +D+
Sbjct: 699 GKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRA----IQFTVDA 754
Query: 710 VNLDEISIKGYNKNLQEIK 728
+++ K K+L+ K
Sbjct: 755 KEAEKVGTKVPQKSLKRKK 773
Score = 38 (18.4 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 735 INSEINDVNECESC 748
I I D+ C+SC
Sbjct: 801 ITCNIEDLESCQSC 814
>SGD|S000000872 [details] [associations]
symbol:RNR1 "Major isoform of large subunit of
ribonucleotide-diphosphate reductase" species:4932 "Saccharomyces
cerevisiae" [GO:0000166 "nucleotide binding" evidence=IEA;IDA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IMP;IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 SGD:S000000872
Pfam:PF03477 GO:GO:0005524 GO:GO:0000166 GO:GO:0006260
EMBL:BK006939 EMBL:U18813 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 OMA:ETIYHAS
OrthoDB:EOG480N4T EMBL:X69216 EMBL:X69217 PIR:S50573
RefSeq:NP_010993.1 PDB:1ZYZ PDB:1ZZD PDB:2CVS PDB:2CVT PDB:2CVU
PDB:2CVV PDB:2CVW PDB:2CVX PDB:2CVY PDB:2EUD PDB:2ZLF PDB:2ZLG
PDB:3K8T PDB:3PAW PDB:3RSR PDB:3S87 PDB:3S8A PDB:3S8B PDB:3S8C
PDB:3TB9 PDB:3TBA PDBsum:1ZYZ PDBsum:1ZZD PDBsum:2CVS PDBsum:2CVT
PDBsum:2CVU PDBsum:2CVV PDBsum:2CVW PDBsum:2CVX PDBsum:2CVY
PDBsum:2EUD PDBsum:2ZLF PDBsum:2ZLG PDBsum:3K8T PDBsum:3PAW
PDBsum:3RSR PDBsum:3S87 PDBsum:3S8A PDBsum:3S8B PDBsum:3S8C
PDBsum:3TB9 PDBsum:3TBA ProteinModelPortal:P21524 SMR:P21524
DIP:DIP-6299N IntAct:P21524 MINT:MINT-680321 STRING:P21524
PaxDb:P21524 PeptideAtlas:P21524 PRIDE:P21524 EnsemblFungi:YER070W
GeneID:856801 KEGG:sce:YER070W CYGD:YER070w
EvolutionaryTrace:P21524 NextBio:983047 Genevestigator:P21524
GermOnline:YER070W Uniprot:P21524
Length = 888
Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
Identities = 282/737 (38%), Positives = 420/737 (56%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLS 64
P Y+ + AR+ + + K+ + K ++ +Y + I + + N + N
Sbjct: 72 PDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYN--IVMENKD 129
Query: 65 LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCA 124
L++A++ +RD Q++Y G K L Y L I G E PQ MR+A+G+ + + A
Sbjct: 130 KLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDI---EAA 186
Query: 125 IKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAG 183
++ YNL+S F ++PTLFN+GT + Q+SSC+L + +D + GI++++KE AL+SK AG
Sbjct: 187 LETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAG 246
Query: 184 GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHM 242
G+G +RS GS I GTNG S G+IP ++V N+ A V+QGG KR GA YLE WH
Sbjct: 247 GIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHA 306
Query: 243 DIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKE 302
DI +FI++RKN G + R D+ A+W+PDLFMKRV + TWTLFSP P L + +G E
Sbjct: 307 DIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDE 366
Query: 303 FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVG 362
FE Y YE + + GK I A LW IL ETG P++ +KDACN +S Q+++G
Sbjct: 367 FEALYTRYEKEGR-GKT-----IKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLG 420
Query: 363 IIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGKLDPIKLKKTIRIAM---RM 416
+I SSNLC EI ++ +E VCNL S+ L ++ +GK KK IA R
Sbjct: 421 VIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRN 480
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ VID NYY V++A+ SN+RHRP+ LG+ G D ++++P+ S+EA Q E I
Sbjct: 481 LNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIY 540
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKL 536
+ + AS ELA++ G Y ++ GS QGIL D +K G +W L
Sbjct: 541 HASMEASCELAQKDGPYETFQGSPASQGILQFDMWD--QKPYGM----------WDWDTL 588
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
R I K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N YL+++
Sbjct: 589 RKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRD 648
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
L G+WDE M L +G++ + +P +L+ +Y T +EIS II + R +IDQ
Sbjct: 649 LVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQ 708
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEI 715
S SLN+++ + KL + W +GLKT YYLR+ +A+ A + ID D+
Sbjct: 709 SHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAA----IQFTIDQKIADQA 764
Query: 716 SIKGYNKNLQEIKNNKK 732
+ +N+ +I N K+
Sbjct: 765 T-----ENVADISNLKR 776
>UNIPROTKB|P23921 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0055086 "nucleobase-containing
small molecule metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_111217
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829
GO:GO:0005524 GO:GO:0005654 GO:GO:0006260 DrugBank:DB01073
GO:GO:0051290 GO:GO:0015949 DrugBank:DB00441 DrugBank:DB00631
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 OMA:PQARNSN TIGRFAMs:TIGR02506 CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:X59543 EMBL:X59617
EMBL:AF107045 EMBL:BC006498 EMBL:L10342 IPI:IPI00013871 PIR:S16680
RefSeq:NP_001024.1 UniGene:Hs.445705 PDB:2WGH PDB:3HNC PDB:3HND
PDB:3HNE PDB:3HNF PDBsum:2WGH PDBsum:3HNC PDBsum:3HND PDBsum:3HNE
PDBsum:3HNF ProteinModelPortal:P23921 SMR:P23921 DIP:DIP-24233N
IntAct:P23921 MINT:MINT-1406473 STRING:P23921 PhosphoSite:P23921
DMDM:132608 PaxDb:P23921 PeptideAtlas:P23921 PRIDE:P23921
DNASU:6240 Ensembl:ENST00000300738 GeneID:6240 KEGG:hsa:6240
UCSC:uc001lyw.4 GeneCards:GC11P004115 HGNC:HGNC:10451 HPA:CAB022093
MIM:180410 neXtProt:NX_P23921 PharmGKB:PA298 InParanoid:P23921
PhylomeDB:P23921 BindingDB:P23921 ChEMBL:CHEMBL1830 ChiTaRS:RRM1
DrugBank:DB01005 EvolutionaryTrace:P23921 GenomeRNAi:6240
NextBio:24233 ArrayExpress:P23921 Bgee:P23921 CleanEx:HS_RRM1
Genevestigator:P23921 GermOnline:ENSG00000167325 Uniprot:P23921
Length = 792
Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
Identities = 260/629 (41%), Positives = 388/629 (61%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK A
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ Y YE Q G+++ K + A LW I+ ETG P++ +KD+CN +S QQ++
Sbjct: 366 EFEKLYASYEKQ---GRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y A
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+ +I
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWKVLKEKI 588
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L ++
Sbjct: 589 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 648
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQSL
Sbjct: 649 GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 708
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
NI+I+ + KL + W +GLKT YYLR+ A A F + + + D+ +
Sbjct: 709 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQFTLNKEKLK-DKEKV-- 763
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESC 748
+K +E + N ++ S + + +EC C
Sbjct: 764 -SKEEEEKERNTAAMVCS-LENRDECLMC 790
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 214/513 (41%), Positives = 312/513 (60%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKLA 59
K P Y+ + AR+ + + KE K++ D+ Y + K + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKET--KKVFS-DVMEDLYNYINPHNGKHSPMVAKSTLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE Q G+++ K + A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEKLYASYEKQ---GRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
Y A AS +LA+E+G Y +Y+GS +GIL D
Sbjct: 537 YGALEASCDLAKEQGPYETYEGSPVSKGILQYD 569
>UNIPROTKB|E2R8P1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9615 "Canis lupus familiaris" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 OMA:PQARNSN TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 CTD:6240 EMBL:AAEX03012836
RefSeq:XP_534027.2 Ensembl:ENSCAFT00000009652 GeneID:476823
KEGG:cfa:476823 NextBio:20852423 Uniprot:E2R8P1
Length = 792
Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
Identities = 263/646 (40%), Positives = 395/646 (61%)
Query: 107 MRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-L 165
M + + + ++E + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD +
Sbjct: 170 MLMRVSVGIHEEDID-AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSI 228
Query: 166 YGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQ 225
GI++++K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+Q
Sbjct: 229 EGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQ 288
Query: 226 GG-KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTW 284
GG KR GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W
Sbjct: 289 GGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDW 348
Query: 285 TLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHP 344
+L P + P L +G+EFE+ LYE+ K G+++ K + A LW I+ ETG P
Sbjct: 349 SLMCPNECPGLDEVWGEEFEK---LYESYEKQGRVR--KVVKAQQLWYAIIESQTETGTP 403
Query: 345 WITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DP 403
++ +KD+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D
Sbjct: 404 YMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDF 463
Query: 404 IKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
KL + ++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S E
Sbjct: 464 KKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPE 523
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A Q E I Y A AS +LA+E G Y +Y+GS +GIL D
Sbjct: 524 AQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWN----------- 572
Query: 524 KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLS 583
V +E +WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LS
Sbjct: 573 -VTPTELWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631
Query: 584 GEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWI 643
GEF +N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIV 691
Query: 644 IEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSN 702
++ + R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A A
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQ 749
Query: 703 FEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
F + + + E + K +E + N ++ S + + EC C
Sbjct: 750 FTLNKEKLKDKEKA----TKEEEEKERNTAAMVCS-LENREECLMC 790
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 218/534 (40%), Positives = 322/534 (60%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKLA 59
K P Y+ + AR+ + + KE K++ D+ Y + + + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKET--KKVFS-DVMEDLYNYINPHNGRHSPMVAKSTLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ +E +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI--HEED 182
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
+ AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 183 ID-AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ LYE+ K G+++ K + A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEK---LYESYEKQGRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGS-KYLKVNMSE 529
Y A AS +LA+E G Y +Y+GS +GIL D + E K LK +++
Sbjct: 537 YGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTELWDWKLLKEKIAK 590
>UNIPROTKB|E9PD78 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0051290 GO:GO:0009263 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 IPI:IPI00943207 ProteinModelPortal:E9PD78 SMR:E9PD78
Ensembl:ENST00000423050 ArrayExpress:E9PD78 Bgee:E9PD78
Uniprot:E9PD78
Length = 695
Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
Identities = 260/629 (41%), Positives = 388/629 (61%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK A
Sbjct: 89 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 148
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH
Sbjct: 149 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 208
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +G+
Sbjct: 209 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 268
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ Y YE Q G+++ K + A LW I+ ETG P++ +KD+CN +S QQ++
Sbjct: 269 EFEKLYASYEKQ---GRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 323
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+ +
Sbjct: 324 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 383
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y A
Sbjct: 384 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 443
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+ +I
Sbjct: 444 EASCDLAKEQGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWKVLKEKI 491
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L ++
Sbjct: 492 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 551
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQSL
Sbjct: 552 GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 611
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
NI+I+ + KL + W +GLKT YYLR+ A A F + + + D+ +
Sbjct: 612 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQFTLNKEKLK-DKEKV-- 666
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESC 748
+K +E + N ++ S + + +EC C
Sbjct: 667 -SKEEEEKERNTAAMVCS-LENRDECLMC 693
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 200/451 (44%), Positives = 287/451 (63%)
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 30 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID-- 87
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK
Sbjct: 88 -AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 146
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE
Sbjct: 147 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 206
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +
Sbjct: 207 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 266
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G+EFE+ Y YE Q G+++ K + A LW I+ ETG P++ +KD+CN +S QQ
Sbjct: 267 GEEFEKLYASYEKQ---GRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 321
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRMLD 418
++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+
Sbjct: 322 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 381
Query: 419 NVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYY 478
+IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y
Sbjct: 382 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 441
Query: 479 AYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
A AS +LA+E+G Y +Y+GS +GIL D
Sbjct: 442 ALEASCDLAKEQGPYETYEGSPVSKGILQYD 472
>UNIPROTKB|Q9UW15 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
chain" species:367110 "Neurospora crassa OR74A" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AABX02000008 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:AF171697 EMBL:AL390092 PIR:T43711
RefSeq:XP_956818.1 UniGene:Ncr.20426 ProteinModelPortal:Q9UW15
SMR:Q9UW15 STRING:Q9UW15 EnsemblFungi:EFNCRT00000002608
GeneID:3872956 KEGG:ncr:NCU03539 OMA:ETIYHAS OrthoDB:EOG480N4T
Uniprot:Q9UW15
Length = 929
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 255/633 (40%), Positives = 388/633 (61%)
Query: 68 NALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKF 127
+A++ +RD + Y G K L Y L ++G E PQ MR+A+G+ ++ R I+
Sbjct: 133 SAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVER---VIET 189
Query: 128 YNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGGLG 186
YNL+S F ++PTLFN+GT + QLSSC+L + +D + GI++++K A++SK AGG+G
Sbjct: 190 YNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMISKMAGGIG 249
Query: 187 NDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMDIE 245
+ ++R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH D+
Sbjct: 250 LNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADVF 309
Query: 246 EFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEE 305
EF++LRKN G + R D+ +A+W+PDLFMKRV + WTL P++ P L + +G EFE
Sbjct: 310 EFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLADVYGDEFEA 369
Query: 306 SYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIH 365
Y YE + K G+ K + A LW IL ETG+P++ +KDACN +S Q+++G I
Sbjct: 370 LYEKYEKEGK-GR----KTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTIR 424
Query: 366 SSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVIDI 423
SSNLCTEI ++ +E+ VCNL S+ L+ + +N D KL + ++ +R L+ +IDI
Sbjct: 425 SSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQVVVRNLNKIIDI 484
Query: 424 NYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYAS 483
N+Y VK+A SN+RHRP+G+G+ G D +++P+ S A K Q E I + A AS
Sbjct: 485 NHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALTAS 544
Query: 484 TELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF 543
+LA+E+G Y++Y+GS QGIL D V + +W L+ IKK+
Sbjct: 545 CQLAKEQGPYATYEGSPVSQGILQYDMWN------------VTPTNLWDWTALKADIKKY 592
Query: 544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
G+RNS +A PTA+ S I+G + EP N++ + L+GEF +N +L+++L + GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
++M + G++ I IP+D++ +Y T +EIS I++ + R +IDQSQSLNI+
Sbjct: 653 SDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIH 712
Query: 664 ISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
+ + K+ + W GLKT YYLR+ +A
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAA 745
>MGI|MGI:98180 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate
reductase complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=IPI] [GO:0051290 "protein
heterotetramerization" evidence=IPI] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 MGI:MGI:98180 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CH466531 GO:GO:0051290 GO:GO:0017076
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:K02927 EMBL:AK088043
EMBL:AK137075 EMBL:AK168586 EMBL:BC016450 IPI:IPI00315127
PIR:A24050 RefSeq:NP_033129.2 UniGene:Mm.197486 UniGene:Mm.415177
ProteinModelPortal:P07742 SMR:P07742 STRING:P07742
PhosphoSite:P07742 PaxDb:P07742 PRIDE:P07742
Ensembl:ENSMUST00000033283 GeneID:20133 KEGG:mmu:20133
InParanoid:Q91YM8 BindingDB:P07742 ChEMBL:CHEMBL3739 NextBio:297643
Bgee:P07742 CleanEx:MM_RRM1 Genevestigator:P07742
GermOnline:ENSMUSG00000030978 Uniprot:P07742
Length = 792
Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
Identities = 260/629 (41%), Positives = 386/629 (61%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK A
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ LYE+ K G+++ K + A LW I+ ETG P++ +KD+CN +S QQ++
Sbjct: 366 EFEK---LYESYEKQGRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL + ++ +R L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y A
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS ELA+E G Y +Y+GS +GIL D V ++ +WK L+ +I
Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWN------------VAPTDLWDWKPLKEKI 588
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L ++
Sbjct: 589 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 648
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW+E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQSL
Sbjct: 649 GLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 708
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
NI+I+ + KL + W +GLKT YYLR+ A A F + + + E ++K
Sbjct: 709 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQFTLNKEKLKDKEKALK- 765
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESC 748
+E + N ++ S + + EC C
Sbjct: 766 ---EEEEKERNTAAMVCS-LENREECLMC 790
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 212/513 (41%), Positives = 312/513 (60%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKLA 59
K P Y+ + AR+ + + KE K++ D+ Y + + + + L+ +A
Sbjct: 70 KHPDYAILAARIAVSNLHKET--KKVFS-DVMEDLYNYINPHNGRHSPMVASSTLDIVMA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ LYE+ K G+++ K + A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEK---LYESYEKQGRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL + ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
Y A AS ELA+E G Y +Y+GS +GIL D
Sbjct: 537 YGALEASCELAKEYGPYETYEGSPVSKGILQYD 569
>UNIPROTKB|Q5R919 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9601 "Pongo abelii" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 CTD:6240 HOVERGEN:HBG003447 HSSP:P21524
EMBL:CR859577 RefSeq:NP_001126012.1 UniGene:Pab.9179
ProteinModelPortal:Q5R919 SMR:Q5R919 PRIDE:Q5R919 GeneID:100172956
KEGG:pon:100172956 InParanoid:Q5R919 Uniprot:Q5R919
Length = 792
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 259/629 (41%), Positives = 388/629 (61%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK A
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ Y YE Q G+++ K + A LW I+ ETG P++ +KD+CN +S QQ++
Sbjct: 366 EFEKLYASYEKQ---GRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRMLDNV 420
G I S+LCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+ +
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y A
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS +LA+E+G Y +Y+GS +GIL D V ++ +WK L+ +I
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWKLLKEKI 588
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L ++
Sbjct: 589 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 648
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQSL
Sbjct: 649 GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 708
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
NI+I+ + KL + W +GLKT YYLR+ A A F + + + D+ +
Sbjct: 709 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQFTLNKEKLK-DKEKV-- 763
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESC 748
+K +E + N ++ S + + +EC C
Sbjct: 764 -SKEEEEKERNTAAMVCS-LENRDECLMC 790
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 213/513 (41%), Positives = 312/513 (60%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKLA 59
K P Y+ + AR+ + + KE K++ D+ Y + K + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKEA--KKVFS-DVMEDLYNYINPHNGKHSPMVAKSTLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE Q G+++ K + A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEKLYASYEKQ---GRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I S+LCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R
Sbjct: 417 QQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
Y A AS +LA+E+G Y +Y+GS +GIL D
Sbjct: 537 YGALEASCDLAKEQGPYETYEGSPVSKGILQYD 569
>RGD|1592569 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10116 "Rattus
norvegicus" [GO:0000278 "mitotic cell cycle" evidence=IEP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005635 "nuclear
envelope" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006206 "pyrimidine nucleobase metabolic process" evidence=IEP]
[GO:0008584 "male gonad development" evidence=IEP] [GO:0010212
"response to ionizing radiation" evidence=IEP] [GO:0021846 "cell
proliferation in forebrain" evidence=IEP] [GO:0042995 "cell
projection" evidence=IDA] [GO:0043025 "neuronal cell body"
evidence=IDA] [GO:0060041 "retina development in camera-type eye"
evidence=IEP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
RGD:1592569 GO:GO:0005524 GO:GO:0005737 GO:GO:0005635 GO:GO:0006260
GO:GO:0043025 GO:GO:0006206 EMBL:CH473956 GO:GO:0010212
GO:GO:0008584 GO:GO:0060041 GO:GO:0042995 GO:GO:0021846
GO:GO:0000278 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
CTD:6240 HOVERGEN:HBG003447 EMBL:BC085906 IPI:IPI00361151
RefSeq:NP_001013254.1 UniGene:Rn.162454 SMR:Q5U2Q5 GeneID:685579
KEGG:rno:685579 ChEMBL:CHEMBL5130 NextBio:729994
Genevestigator:Q5U2Q5 Uniprot:Q5U2Q5
Length = 792
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 258/629 (41%), Positives = 386/629 (61%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK A
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ LYE+ K G+++ K + A LW I+ ETG P++ +KD+CN +S QQ++
Sbjct: 366 EFEK---LYESYEKQGRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL + ++ +R L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y A
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS +LA+E G Y +Y+GS +GIL D V ++ +WK L+ +I
Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWKLLKEKI 588
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L ++
Sbjct: 589 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 648
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW+E M + +G++ I IP+DL+++Y T +EIS +++ + R +IDQSQSL
Sbjct: 649 GLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 708
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
NI+I+ + KL + W +GLKT YYLR+ A A F + + + E ++K
Sbjct: 709 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQFTLNKEKLKDKEKALK- 765
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESC 748
+E + N ++ S + + EC C
Sbjct: 766 ---EEEEKERNTAAMVCS-LENREECLMC 790
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 210/513 (40%), Positives = 312/513 (60%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y+ + AR+ + + KE K++ D+ Y + + G + ++ E
Sbjct: 70 KHPDYAILAARIAVSNLHKET--KKVFS-DVMEDLYNYINP--HNGRHSPMVASSTLEIV 124
Query: 63 LS---LLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
++ L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 125 MAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ LYE+ K G+++ K + A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEK---LYESYEKQGRVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ D KL + ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
Y A AS +LA+E G Y +Y+GS +GIL D
Sbjct: 537 YGALEASCDLAKEYGPYETYEGSPVSKGILQYD 569
>UNIPROTKB|F1MSF1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:DAAA02040985 EMBL:DAAA02040986 IPI:IPI00884866
UniGene:Bt.12465 Ensembl:ENSBTAT00000017428 Uniprot:F1MSF1
Length = 791
Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
Identities = 259/629 (41%), Positives = 385/629 (61%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK A
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L +G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ LYE K G+++ K I A LW I+ ETG P++ +KD+CN +S QQ++
Sbjct: 366 EFEK---LYERYEKEGRVR--KVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 480
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY V +A SN HRP+G+G+ G D +M+ P+ S EA Q E I Y A
Sbjct: 481 IDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS +LA+E G Y +Y+GS +GIL D V ++ +W L+ +I
Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWNLLKEKI 588
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L ++
Sbjct: 589 AKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 648
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW+E M + +G++ I IPDDL+++Y T +EIS +++ + R +IDQSQSL
Sbjct: 649 GLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 708
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
NI+I+ + KL + W +GLKT YYLR+ A A F ++N +++ K
Sbjct: 709 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQF-----TLNKEKLKDKE 761
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESC 748
+E + N ++ S + + +EC C
Sbjct: 762 KVSKEEEKERNTAAMVCS-LENRDECLMC 789
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 214/513 (41%), Positives = 310/513 (60%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKLA 59
K P Y+ + AR+ + + KE K++ D+ Y + K + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKET--KKVFS-DVMEDLFNYINPHNGKHSPMVAKSTLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +NY G K L Y L I G E PQ MR+++G+ + +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDID 184
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+
Sbjct: 185 ---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L P + P L
Sbjct: 302 EPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ LYE K G+++ K I A LW I+ ETG P++ +KD+CN +S
Sbjct: 362 VWGEEFEK---LYERYEKEGRVR--KVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRM 416
QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL + ++ +R
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY V +A SN HRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
Y A AS +LA+E G Y +Y+GS +GIL D
Sbjct: 537 YGALEASCDLAKEYGPYETYEGSPVSKGILQYD 569
>WB|WBGene00004391 [details] [associations]
symbol:rnr-1 species:6239 "Caenorhabditis elegans"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040017 "positive regulation of
locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006260 GO:GO:0040011 GO:GO:0040017
GO:GO:0040035 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
PIR:S28302 RefSeq:NP_499039.1 ProteinModelPortal:Q03604 SMR:Q03604
DIP:DIP-26889N IntAct:Q03604 MINT:MINT-1080458 STRING:Q03604
PaxDb:Q03604 PRIDE:Q03604 EnsemblMetazoa:T23G5.1.1
EnsemblMetazoa:T23G5.1.2 EnsemblMetazoa:T23G5.1.3 GeneID:176301
KEGG:cel:CELE_T23G5.1 UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 251/573 (43%), Positives = 362/573 (63%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ AL+SK A
Sbjct: 192 AIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALISKSA 251
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA YLE WH
Sbjct: 252 GGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 311
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
DI EF+ LRKNTG + R D+ +A+W+PDLFMKRV K W+L P + P L + +G+
Sbjct: 312 ADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGE 371
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +S QQ++
Sbjct: 372 EFEALYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNL 426
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI ++ +EI VCNL SI L ++ K D +KL + ++ R L+ +
Sbjct: 427 GTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVITRNLNKI 486
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++S EA + E I Y A
Sbjct: 487 IDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAAL 546
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS ELAE G YS+Y+GS +G L D G V ++ +W LR +I
Sbjct: 547 EASCELAELNGPYSTYEGSPVSKGQLQFDMW-------G-----VTPTDQCDWATLRKKI 594
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K G+RNS +A PTA+ + I+G + SIEP N++ + LSG+F +N +++K+L ++
Sbjct: 595 AKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVER 654
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW + M L +G++ I IP D++++Y T +EIS IIE + R +IDQSQSL
Sbjct: 655 GLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSL 714
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRS 692
NI+++ S + + W +GLKT YYLR+
Sbjct: 715 NIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRT 747
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 203/455 (44%), Positives = 289/455 (63%)
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
+ E N L++A++ +RD + Y G K L Y L I +E PQ MR+++G+ ++
Sbjct: 129 IIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGDD 188
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ A
Sbjct: 189 ITS---AIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCA 245
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
L+SK AGG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA
Sbjct: 246 LISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAI 305
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI EF+ LRKNTG + R D+ +A+W+PDLFMKRV K W+L P + P L
Sbjct: 306 YLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGL 365
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +
Sbjct: 366 DDCWGEEFEALYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRK 420
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAM 414
S QQ++G I SNLCTEI ++ +EI VCNL SI L ++ K D +KL + ++
Sbjct: 421 SNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVIT 480
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ +ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++S EA + E
Sbjct: 481 RNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFET 540
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
I Y A AS ELAE G YS+Y+GS +G L D
Sbjct: 541 IYYAALEASCELAELNGPYSTYEGSPVSKGQLQFD 575
>UNIPROTKB|Q03604 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
subunit" species:6239 "Caenorhabditis elegans" [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006260
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 PIR:S28302 RefSeq:NP_499039.1
ProteinModelPortal:Q03604 SMR:Q03604 DIP:DIP-26889N IntAct:Q03604
MINT:MINT-1080458 STRING:Q03604 PaxDb:Q03604 PRIDE:Q03604
EnsemblMetazoa:T23G5.1.1 EnsemblMetazoa:T23G5.1.2
EnsemblMetazoa:T23G5.1.3 GeneID:176301 KEGG:cel:CELE_T23G5.1
UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 251/573 (43%), Positives = 362/573 (63%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ AL+SK A
Sbjct: 192 AIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALISKSA 251
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA YLE WH
Sbjct: 252 GGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 311
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
DI EF+ LRKNTG + R D+ +A+W+PDLFMKRV K W+L P + P L + +G+
Sbjct: 312 ADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGE 371
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +S QQ++
Sbjct: 372 EFEALYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNL 426
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI ++ +EI VCNL SI L ++ K D +KL + ++ R L+ +
Sbjct: 427 GTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVITRNLNKI 486
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++S EA + E I Y A
Sbjct: 487 IDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAAL 546
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS ELAE G YS+Y+GS +G L D G V ++ +W LR +I
Sbjct: 547 EASCELAELNGPYSTYEGSPVSKGQLQFDMW-------G-----VTPTDQCDWATLRKKI 594
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
K G+RNS +A PTA+ + I+G + SIEP N++ + LSG+F +N +++K+L ++
Sbjct: 595 AKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVER 654
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW + M L +G++ I IP D++++Y T +EIS IIE + R +IDQSQSL
Sbjct: 655 GLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSL 714
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRS 692
NI+++ S + + W +GLKT YYLR+
Sbjct: 715 NIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRT 747
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 203/455 (44%), Positives = 289/455 (63%)
Query: 58 LAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
+ E N L++A++ +RD + Y G K L Y L I +E PQ MR+++G+ ++
Sbjct: 129 IIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGDD 188
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENA 176
AI+ YNL+S ++PTLFNSGT R Q+SSC+L T+ +D + GI++++K+ A
Sbjct: 189 ITS---AIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCA 245
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
L+SK AGG+G + ++R+ GS I GTNG S G+IP L+V N+ A V+QGG KR GA
Sbjct: 246 LISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAI 305
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH DI EF+ LRKNTG + R D+ +A+W+PDLFMKRV K W+L P + P L
Sbjct: 306 YLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGL 365
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
+ +G+EFE Y YE + G+++ K + A LW I+S ETG P+IT+KDA N +
Sbjct: 366 DDCWGEEFEALYAKYEAE---GRVR--KTVKARKLWEHIVSNQIETGLPYITYKDAANRK 420
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK-NGKLDPIKLKKTIRIAM 414
S QQ++G I SNLCTEI ++ +EI VCNL SI L ++ K D +KL + ++
Sbjct: 421 SNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVIT 480
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
R L+ +ID+NYY V++A+ SN+RHRP+GLG+ G DC +M+ P++S EA + E
Sbjct: 481 RNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFET 540
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
I Y A AS ELAE G YS+Y+GS +G L D
Sbjct: 541 IYYAALEASCELAELNGPYSTYEGSPVSKGQLQFD 575
>SGD|S000001328 [details] [associations]
symbol:RNR3 "Minor isoform of the large subunit of the RNR
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;TAS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
SGD:S000001328 GO:GO:0005739 GO:GO:0005524 GO:GO:0006260
EMBL:BK006942 EMBL:Z38060 GO:GO:0009263 RefSeq:NP_012198.3
GeneID:854744 KEGG:sce:YIL066C KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OrthoDB:EOG480N4T EMBL:M58012
PIR:S48413 RefSeq:NP_012204.3 ProteinModelPortal:P21672 SMR:P21672
DIP:DIP-2563N IntAct:P21672 MINT:MINT-425113 STRING:P21672
PaxDb:P21672 PeptideAtlas:P21672 PRIDE:P21672 EnsemblFungi:YIL066C
GeneID:854750 KEGG:sce:YIL060W CYGD:YIL066c OMA:RTPFICQ
NextBio:977464 Genevestigator:P21672 GermOnline:YIL066C
Uniprot:P21672
Length = 869
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 271/706 (38%), Positives = 409/706 (57%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG---IDNKLLNPKLAEF 61
P Y+ + AR+ + + K+ + K I+ ++ + K I +++ N +
Sbjct: 72 PDYATLAARIAISNLHKQTTKQFSKVIE---DLHDWINPATGKHAPMISDEIYN--IVME 126
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNRE 121
N L++A++ +RD Q+ Y G K L Y L + G E PQ MR+A+G+ + S+ E
Sbjct: 127 NKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGI--HGSDIE 184
Query: 122 KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSK 180
+K YNL+S F ++PTLFN+GT Q+SSC+L + DD + GI++++KE A++SK
Sbjct: 185 S-VLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAMISK 243
Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLET 239
AGG+G +RS GS I GTNG S G+IP ++V N+ A V+QGG KR GA +LE
Sbjct: 244 TAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALFLEP 303
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
WH DI +F+++RK G + R D+ A+W+PDLFMKRV + WTLFSP P L + +
Sbjct: 304 WHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLDDVW 363
Query: 300 GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
G EFEE Y YE + + GK I A LW IL ETG P++ +KDACN ++ QQ
Sbjct: 364 GDEFEELYTRYEREGR-GKT-----IKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQ 417
Query: 360 HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMK---NGKLDPI---KLKKTIRIA 413
++G I SSNLC EI +S +E VCNL SI L ++ +GK +L + ++
Sbjct: 418 NLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLHEIAKVI 477
Query: 414 MRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSME 473
L+ VID NYY V +A+ SN++HRP+ LG+ G D ++++P+ S+EA Q E
Sbjct: 478 THNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTLNKQIFE 537
Query: 474 MICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNW 533
I + AS ELA+++G+YS+++GS +GIL D K G +W
Sbjct: 538 TIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNA--KPFGM----------WDW 585
Query: 534 KKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYL 593
+ LR I K G+RNS +A PTA+ S I+G + EP N++ + LSGEF +N YL
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 594 VKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKW 653
+++L G+WD+SM L +G++ + +P +L+++Y T +EIS II + R +
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 654 IDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYA 698
IDQS SLN+++ S K+ + W +GLKT YYLR+ +A+ A
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAA 751
>FB|FBgn0011703 [details] [associations]
symbol:RnrL "Ribonucleoside diphosphate reductase large
subunit" species:7227 "Drosophila melanogaster" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS;NAS] [GO:0006260
"DNA replication" evidence=IEA;NAS] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0042246 "tissue regeneration" evidence=IMP] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:AE014134
GO:GO:0006260 GO:GO:0006919 GO:GO:0042246 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT EMBL:AF132143
EMBL:AY119149 EMBL:U09369 RefSeq:NP_477027.1 UniGene:Dm.3216
ProteinModelPortal:P48591 SMR:P48591 DIP:DIP-19582N
MINT:MINT-829510 STRING:P48591 PaxDb:P48591
EnsemblMetazoa:FBtr0080059 GeneID:34392 KEGG:dme:Dmel_CG5371
CTD:34392 FlyBase:FBgn0011703 InParanoid:P48591 OrthoDB:EOG4XKSNZ
PhylomeDB:P48591 GenomeRNAi:34392 NextBio:788275 Bgee:P48591
GermOnline:CG5371 Uniprot:P48591
Length = 812
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 261/631 (41%), Positives = 382/631 (60%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENALLSKYA 182
A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GIF+S+++ A++SK A
Sbjct: 197 AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAMISKSA 256
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG KR GA YLE WH
Sbjct: 257 GGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWH 316
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L P+ P LH+ +G
Sbjct: 317 SDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLHDVWGD 376
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ Y YE + G+ + + A LW I+ ETG+P++ FKDACN +S QQ+V
Sbjct: 377 EFEKLYEKYEQE---GRAN--RTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNV 431
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI ++ +EI VCNL SI L + + K D KLK+ +I + L+ +
Sbjct: 432 GTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVTKNLNKI 491
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY + +A+ SNLRHRPVG+GI GF D L +M+ PY S+EA Q E I Y A
Sbjct: 492 IDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGAL 551
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
AS ELA+ +G Y +Y+GS +GIL D + +K + N+ + W+KL+ I
Sbjct: 552 EASCELAQTEGPYETYEGSPVSKGILQYD---MWDK------VPTNLWD---WQKLKESI 599
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
+ G+RNS VA PTA+ + I+G + S EP N++ + LSGEF +N +L+++L +
Sbjct: 600 RMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTEL 659
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
LWD+ M + G++ I IP +R +Y T +EIS I+ + R +IDQSQS
Sbjct: 660 DLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSF 719
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSI-SANYAKKS-NFEMGIDSVNLDEISI 717
NI+++ + KL + +W GLKT YYLR+ +AN + + N + G S+N +
Sbjct: 720 NIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTA 779
Query: 718 KGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+G + +E + K + + + + C SC
Sbjct: 780 EGSPQKYEEDRERKMADMVCSLENKDACMSC 810
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 222/546 (40%), Positives = 327/546 (59%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF--- 61
P Y+ + AR+ + + KE K + +++ ++ +NK + K+ P ++EF
Sbjct: 83 PDYAILAARIAVSNLHKET-KKAFSDV-----FEDLYNH-VNKETNQKV--PLVSEFHYN 133
Query: 62 ----NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNE 117
N + L+++++ +RD +NY G K L Y L G E PQ MR+A+G+ +
Sbjct: 134 VVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGED 193
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVP-DDLYGIFESIKENA 176
+ A++ YNLLS F ++PTLF + T R QLSSC+L T+ D + GIF+S+++ A
Sbjct: 194 ID---AAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA 250
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICA 235
++SK AGG+G + +R+ G+ I GTNG S G++P L+V N+VA V+QGG KR GA
Sbjct: 251 MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAI 310
Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
YLE WH D+ EF+EL+KNTG + R D+ A+W+PDLFMKRV W+L P+ P L
Sbjct: 311 YLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGL 370
Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
H+ +G EFE+ Y YE + G+ + + A LW I+ ETG+P++ FKDACN +
Sbjct: 371 HDVWGDEFEKLYEKYEQE---GRAN--RTVKAQSLWFAIIEAQVETGNPYMLFKDACNRK 425
Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLKKTIRIAM 414
S QQ+VG I SNLCTEI ++ +EI VCNL SI L + + K D KLK+ +I
Sbjct: 426 SNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVT 485
Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
+ L+ +IDINYY + +A+ SNLRHRPVG+GI GF D L +M+ PY S+EA Q E
Sbjct: 486 KNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFET 545
Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
I Y A AS ELA+ +G Y +Y+GS +GIL D + +K + + + ES+
Sbjct: 546 IYYGALEASCELAQTEGPYETYEGSPVSKGILQYD---MWDKVPTNLWDWQKLKESIRMH 602
Query: 535 KLRNRI 540
+RN +
Sbjct: 603 GVRNSL 608
>ZFIN|ZDB-GENE-990415-247 [details] [associations]
symbol:rrm1 "ribonucleotide reductase M1
polypeptide" species:7955 "Danio rerio" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
ZFIN:ZDB-GENE-990415-247 GO:GO:0005524 GO:GO:0006260 GO:GO:0009263
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:U57964 IPI:IPI00482388 RefSeq:NP_571530.1
UniGene:Dr.33356 ProteinModelPortal:P79732 SMR:P79732 STRING:P79732
PRIDE:P79732 GeneID:30740 KEGG:dre:30740 CTD:6240
HOVERGEN:HBG003447 InParanoid:P79732 OrthoDB:EOG4ZW59G
NextBio:20807088 ArrayExpress:P79732 Uniprot:P79732
Length = 794
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 256/629 (40%), Positives = 379/629 (60%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYA 182
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+SK A
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALISKSA 245
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G + +R+ G I GTNG S G++P L+V N+ A V+QGG KR GA YLE WH
Sbjct: 246 GGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMYLEPWH 305
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
DI +F+EL+KNTG + +R D+ A+W+PDLFMKRV W+L P D P L +G+
Sbjct: 306 FDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDECWGE 365
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ Y YE + G+ K + + A LW I+ ETG P++ +KDACN +S +Q++
Sbjct: 366 EFEKLYAKYEQE---GRAK--RVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNL 420
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRMLDNV 420
G I SNLCTEI TS +E+ VCNL SI L +++ + + D KL ++ ++ L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNLNKI 480
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
IDINYY VK+A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I Y A
Sbjct: 481 IDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAAL 540
Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
+S ELA E G Y +Y G +GIL D + EK ++ +W L+ +I
Sbjct: 541 ESSCELAAEYGPYQTYAGCPVSKGILQYD---MWEK---------TPTDLWDWAALKEKI 588
Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF +N +L+K+L ++
Sbjct: 589 ANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTER 648
Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
GLW+E M + +G++ I IPDDL+++Y T +EIS I++ + R +IDQSQSL
Sbjct: 649 GLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSL 708
Query: 661 NIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVNLDEISIKG 719
NI+I+ + KL + W +GLKT YYLR+ A F + + + + +
Sbjct: 709 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPG--ANPIQFTLNKEKLKETQKTTSS 766
Query: 720 YNKNLQEIKNNKKCLINSEINDVNECESC 748
++ +E NK ++ S + + +EC C
Sbjct: 767 EDEETKE--RNKAAMVCS-LENRHECLMC 792
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 211/513 (41%), Positives = 306/513 (59%)
Query: 3 KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
K P Y+ + AR+ + + KE VF + ++ + Y + + I + L+ LA
Sbjct: 70 KHPDYAILAARIAVSNLHKETKKVFSEVMEDL---YNYVNPLNSRHSPMISKETLDIVLA 126
Query: 60 EFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
N L++A++ +RD +N+ G K L Y L I G E PQ MR+++G+ +
Sbjct: 127 --NKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDI- 183
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALL 178
AI+ YNLLS F ++PTLFN+GT R QLSSC+L + DD + GI++++K+ AL+
Sbjct: 184 --AAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALI 241
Query: 179 SKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYL 237
SK AGG+G + +R+ G I GTNG S G++P L+V N+ A V+QGG KR GA YL
Sbjct: 242 SKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMYL 301
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
E WH DI +F+EL+KNTG + +R D+ A+W+PDLFMKRV W+L P D P L
Sbjct: 302 EPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDE 361
Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
+G+EFE+ Y YE + G+ K + + A LW I+ ETG P++ +KDACN +S
Sbjct: 362 CWGEEFEKLYAKYEQE---GRAK--RVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSN 416
Query: 358 QQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGK-LDPIKLKKTIRIAMRM 416
+Q++G I SNLCTEI TS +E+ VCNL SI L +++ + + D KL ++ ++
Sbjct: 417 RQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKN 476
Query: 417 LDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMIC 476
L+ +IDINYY VK+A+ SN RHRP+G+G+ G D +M+ P+ S EA Q E I
Sbjct: 477 LNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIY 536
Query: 477 YYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
Y A +S ELA E G Y +Y G +GIL D
Sbjct: 537 YAALESSCELAAEYGPYQTYAGCPVSKGILQYD 569
>DICTYBASE|DDB_G0284071 [details] [associations]
symbol:rnrA "ribonucleoside-diphosphate reductase"
species:44689 "Dictyostelium discoideum" [GO:0005515 "protein
binding" evidence=IPI] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;ISS]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA;ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0009186 "deoxyribonucleoside diphosphate metabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 dictyBase:DDB_G0284071 Pfam:PF03477
GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0006260
EMBL:AAFI02000063 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT RefSeq:XP_638726.1
HSSP:P21524 ProteinModelPortal:Q54Q71 SMR:Q54Q71 STRING:Q54Q71
EnsemblProtists:DDB0230075 GeneID:8624396 KEGG:ddi:DDB_G0284071
ProtClustDB:CLSZ2429164 GO:GO:0009186 Uniprot:Q54Q71
Length = 870
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 271/709 (38%), Positives = 400/709 (56%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFIN--KGIDNKLLNPKLAE 60
+ P Y + AR+ + + K+ ++ + K+Y +FIN + L++ +L E
Sbjct: 88 RHPDYGILAARISVSNLHKQTSKSFVETVK-----KQY--EFINPKSNLLAPLVSKELYE 140
Query: 61 FNLS---LLSNALLPERDLQFNYLGLKILYDRYFLH-IEGIRIEMPQFFFMRIAMGLSLN 116
+ L + + RD +++ G K L +R +LH I G +E PQ MR+++G+ +
Sbjct: 141 IVMKHGERLESVIDYYRDFDYDFFGFKTL-ERSYLHRINGKIVERPQHMLMRVSIGI--H 197
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKEN 175
+ E AI Y LS F +TPTLFN+GT Q+SSC+L + +D + GI++++K+
Sbjct: 198 GEDLES-AINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQC 256
Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAIC 234
AL+SK AGG+G ++R+ S I+GTNG S G++P L+V ND A V+QGG KRKGA
Sbjct: 257 ALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAFA 316
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
YLE WH D+ EFI+L+KNTG + R D+ A+WV D+FM+RV + W LF P + P
Sbjct: 317 VYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAPG 376
Query: 295 LHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
L +E Y+ YE L + + I A LW I+ ETG P+I +KDACN
Sbjct: 377 LAETHSEEHRALYLKYEATPDLPR----RVIKAQELWFAIMESQVETGTPFILYKDACNA 432
Query: 355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIK------- 405
+S Q+++G I SSNLCTEI TS +EI VCNL SI L + K G DP +
Sbjct: 433 KSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQKVGSTDPKEKEFDHQF 492
Query: 406 LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAI 465
L + ++ L+ +ID NYY V +AK SNLRHRP+G+GI G D M++P+ S A
Sbjct: 493 LFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRMPFDSVAAA 552
Query: 466 KFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKV 525
K + E I + A AS ELA G Y S+ GS +GIL D V
Sbjct: 553 KLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWN------------V 600
Query: 526 NMSESLNWKKLR-NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG 584
S NW +L+ N + K G+RNS +A PTA+ S I+G + EP N++ + L+G
Sbjct: 601 TPSSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAG 660
Query: 585 EFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWII 644
EFT +N+ L+++L + G+W M + G++ I IPDDL+++Y T +EI +I
Sbjct: 661 EFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLI 720
Query: 645 EAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRS 692
+ + R +IDQSQS N++I+ + KL + +W +GLKT YYLR+
Sbjct: 721 DMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRT 769
>UNIPROTKB|P50647 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5838 "Plasmodium falciparum FCR-3/Gambia"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:AF205580 PIR:B48687 ProteinModelPortal:P50647 SMR:P50647
Uniprot:P50647
Length = 804
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 261/637 (40%), Positives = 370/637 (58%)
Query: 124 AIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKENALLSKYA 182
A++ Y+L+S F +TPTLFNSGT R Q+SSC+L S D + GIFE++K+ AL+SK A
Sbjct: 185 ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCALISKTA 244
Query: 183 GGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWH 241
GG+G +R S I+GTNG S G++P L+V ND A V+QGG KRKG+ Y+E WH
Sbjct: 245 GGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVYIEPWH 304
Query: 242 MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGK 301
DI EF++LRKN G + R D+ A+WVPDLFMKRV + WTL P + P L +G+
Sbjct: 305 SDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLSETWGE 364
Query: 302 EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHV 361
EFE+ Y YE + +GK K + A LW IL ETG P +KD+CN + P +++
Sbjct: 365 EFEKLYTKYEEEN-MGK----KTVLAQDLWFAILQSQIETGVPIYLYKDSCNAK-PIKNL 418
Query: 362 GIIHSSNLCTEITLNTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDN 419
G I SNLC EI TS +E+ VCNL SI L + ++ + + KL + +I R LD
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITKIITRNLDK 478
Query: 420 VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
+I+ NYY VK+AK SN RHRP+G+G+ G D +++ Y S A + + E + Y A
Sbjct: 479 IIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYESDAAKELNKRIYETMYYAA 538
Query: 480 YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
S + + G Y SY GS QGIL D + + +KY +W +L+ +
Sbjct: 539 LEMSVDWLQS-GPYESYQGSPGSQGILQFD---MWNAKVDNKYW--------DWDELKLK 586
Query: 540 IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
I K G+RN +A PTA+ S I+G + S EP N++ + LSGEF +N +L+K+L
Sbjct: 587 IAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFD 646
Query: 600 KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
+GLWDE M L +G++ IS IPDDL+++Y T +EI II+ + R +IDQSQS
Sbjct: 647 RGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGYFIDQSQS 706
Query: 660 LNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGI--DSV---NLD 713
LNIYI + KL + W +GLKT YYLR+ +A A K + + ++V N D
Sbjct: 707 LNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNAVKLKNAD 766
Query: 714 EISI--KGYNKNLQEIKNNKKCLINSEINDVNECESC 748
+ I + + +Q + KC+ ND +C C
Sbjct: 767 GVQITREVSRETIQLNQRYSKCVSFKSNND-EQCLMC 802
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 188/436 (43%), Positives = 262/436 (60%)
Query: 78 FNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFM 137
++Y G K L Y L I IE PQ MR+++G+ +++ ++ A++ Y+L+S F
Sbjct: 142 YDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKYFT 198
Query: 138 CSTPTLFNSGTIRSQLSSCYL-STVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLG 196
+TPTLFNSGT R Q+SSC+L S D + GIFE++K+ AL+SK AGG+G +R
Sbjct: 199 HATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRGQN 258
Query: 197 SPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAICAYLETWHMDIEEFIELRKNTG 255
S I+GTNG S G++P L+V ND A V+QGG KRKG+ Y+E WH DI EF++LRKN G
Sbjct: 259 SYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVYIEPWHSDIFEFLDLRKNHG 318
Query: 256 DDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTK 315
+ R D+ A+WVPDLFMKRV + WTL P + P L +G+EFE+ Y YE +
Sbjct: 319 KEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEEN- 377
Query: 316 LGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITL 375
+GK K + A LW IL ETG P +KD+CN + P +++G I SNLC EI
Sbjct: 378 MGK----KTVLAQDLWFAILQSQIETGVPIYLYKDSCNAK-PIKNLGTIKCSNLCCEIIE 432
Query: 376 NTSKNEIGVCNLGSINLT--LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKY 433
TS +E+ VCNL SI L + ++ + + KL + +I R LD +I+ NYY VK+AK
Sbjct: 433 YTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKT 492
Query: 434 SNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRY 493
SN RHRP+G+G+ G D +++ Y S A + + E + Y A S + + G Y
Sbjct: 493 SNTRHRPIGIGVQGLADTFMLLRYLYESDAAKELNKRIYETMYYAALEMSVDWLQS-GPY 551
Query: 494 SSYDGSLWDQGILPQD 509
SY GS QGIL D
Sbjct: 552 ESYQGSPGSQGILQFD 567
>UNIPROTKB|E9PL69 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01008934
ProteinModelPortal:E9PL69 SMR:E9PL69 Ensembl:ENST00000534285
ArrayExpress:E9PL69 Bgee:E9PL69 Uniprot:E9PL69
Length = 570
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 237/589 (40%), Positives = 358/589 (60%)
Query: 163 DDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVA 222
D + GI++++K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A
Sbjct: 4 DSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARY 63
Query: 223 VNQGG-KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKK 281
V+QGG KR GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV
Sbjct: 64 VDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETN 123
Query: 282 STWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFET 341
W+L P + P L +G+EFE+ Y YE Q G+++ K + A LW I+ ET
Sbjct: 124 QDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ---GRVR--KVVKAQQLWYAIIESQTET 178
Query: 342 GHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL 401
G P++ +KD+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ +
Sbjct: 179 GTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHT 238
Query: 402 -DPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYS 460
D KL + ++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D +M+ P+
Sbjct: 239 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 298
Query: 461 SKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGS 520
S EA Q E I Y A AS +LA+E+G Y +Y+GS +GIL D
Sbjct: 299 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWN-------- 350
Query: 521 KYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKS 580
V ++ +WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ +
Sbjct: 351 ----VTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRR 406
Query: 581 NLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISP 640
LSGEF +N +L+K+L ++GLW E M + +G++ I IPDDL+++Y T +EIS
Sbjct: 407 VLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQ 466
Query: 641 NWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAK 699
+++ + R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A A
Sbjct: 467 KTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--AN 524
Query: 700 KSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
F + + + D+ + +K +E + N ++ S + + +EC C
Sbjct: 525 PIQFTLNKEKLK-DKEKV---SKEEEEKERNTAAMVCS-LENRDECLMC 568
>UNIPROTKB|Q8SR37 [details] [associations]
symbol:ECU10_0920 "Ribonucleoside-diphosphate reductase
large chain" species:284813 "Encephalitozoon cuniculi GB-M1"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0009263 KO:K10807 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
EMBL:AL590449 RefSeq:NP_586207.1 ProteinModelPortal:Q8SR37
SMR:Q8SR37 STRING:Q8SR37 PRIDE:Q8SR37 GeneID:859856
GenomeReviews:AL590449_GR KEGG:ecu:ECU10_0920 Uniprot:Q8SR37
Length = 768
Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
Identities = 242/623 (38%), Positives = 369/623 (59%)
Query: 73 ERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLS 132
E D F+Y G+ L Y + + IE PQ FMR+A L +++++ EK + YNLLS
Sbjct: 132 ENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVA--LQIHKTDFEKVR-EVYNLLS 188
Query: 133 SFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGGLGNDWTQ 191
F +TPTL+NS QL+SC+L T +D + G++ I + A+++KY+GG+G +
Sbjct: 189 GHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKYSGGIGLNLHG 248
Query: 192 VRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK-GAICAYLETWHMDIEEFIEL 250
+RS GS ++ T GRS G+IP ++V+N +NQG +R+ G+I +LE WHM+I +F+EL
Sbjct: 249 IRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPWHMEIFDFLEL 308
Query: 251 RKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILY 310
RKNTG + R D+ A+W+ DLFM+RV W+LF P L + +G+EF Y Y
Sbjct: 309 RKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWGEEFNALYCKY 368
Query: 311 ENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLC 370
E +T + + A LW+ I+ ETG P++ +KDACN S QQH+G I SSNLC
Sbjct: 369 E-KTISRTV-----VPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQHLGTIKSSNLC 422
Query: 371 TEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKK 430
EI +S E VCNL SI L + +K+G D ++ ++I L+ VID NYY V++
Sbjct: 423 AEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKILTVNLNRVIDFNYYPVEE 482
Query: 431 AKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEK 490
A+ SN+R+RP+G+G+ G D I+++ + S A E + Y A AS ELAE++
Sbjct: 483 ARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFEAMYYSAMEASCELAEKE 542
Query: 491 GRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNC 550
G + SY+GS +GI +L G K S + +W+ LR RI++ G+RNS
Sbjct: 543 GPFPSYEGSPISKGIF---HFELA----GRK-----ASGNWDWEGLRERIRRHGVRNSLL 590
Query: 551 VAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIAN 610
+A+ PTA S I G + + EP N++ + +GEF +N++LV +L + GLW M
Sbjct: 591 IALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRLGLWSYEMKNL 650
Query: 611 LKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGK 670
+ +G++ I+ IP ++R+IY TA+EI +I+ + RQ ++DQSQSLNI+I+ +
Sbjct: 651 VIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSLNIFIAKPTYS 710
Query: 671 KLDETYKLAWLRGLKT-TYYLRS 692
+L + + GLKT YYLR+
Sbjct: 711 QLTSMHFYGYHCGLKTGMYYLRT 733
Score = 501 (181.4 bits), Expect = 1.1e-45, P = 1.1e-45
Identities = 115/328 (35%), Positives = 189/328 (57%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFN 62
K P Y Q+++R+++ I + +++I +Y K ++G+ ++ + + E
Sbjct: 72 KHPEYGQISSRIIVSYIHEITMDSFVEKI-------KYIQK--HRGMVSEEMYGIILEHG 122
Query: 63 LSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREK 122
+ + E D F+Y G+ L Y + + IE PQ FMR+A L +++++ EK
Sbjct: 123 -ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVA--LQIHKTDFEK 179
Query: 123 CAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKY 181
+ YNLLS F +TPTL+NS QL+SC+L T +D + G++ I + A+++KY
Sbjct: 180 VR-EVYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKY 238
Query: 182 AGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRK-GAICAYLETW 240
+GG+G + +RS GS ++ T GRS G+IP ++V+N +NQG +R+ G+I +LE W
Sbjct: 239 SGGIGLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPW 298
Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
HM+I +F+ELRKNTG + R D+ A+W+ DLFM+RV W+LF P L + +G
Sbjct: 299 HMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWG 358
Query: 301 KEFEESYILYE---NQTKLGKIKLFKKI 325
+EF Y YE ++T + KL+K I
Sbjct: 359 EEFNALYCKYEKTISRTVVPAQKLWKAI 386
>UNIPROTKB|F1SUZ5 [details] [associations]
symbol:F1SUZ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 Pfam:PF03477 GO:GO:0006260 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 EMBL:CU467106
EMBL:CU466349 Ensembl:ENSSSCT00000016142 OMA:XRPGAFA Uniprot:F1SUZ5
Length = 789
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 204/522 (39%), Positives = 308/522 (59%)
Query: 229 RKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFS 288
R GA YLE WH+DI EF++L+KNTG + +R D+ A+W+PDLFMKRV W+L
Sbjct: 291 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 350
Query: 289 PYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITF 348
P + P L +G+EFE+ Y YE Q G ++ K + A LW I+ ETG P++ +
Sbjct: 351 PNECPGLDEVWGEEFEKLYESYERQ---GHVR--KVVKAQQLWYAIIESQTETGTPYMLY 405
Query: 349 KDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKL-DPIKLK 407
KD+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +++ + D KL
Sbjct: 406 KDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLA 465
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+ ++ +R L+ +IDINYY + +A SN RHRP+G+G+ G D +M+ P+ S EA
Sbjct: 466 EVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLL 525
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNM 527
Q E I Y A AS +LA+E G Y +Y+GS +GIL D V
Sbjct: 526 NKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWN------------VTP 573
Query: 528 SESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFT 587
++ +WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP N++ + LSGEF
Sbjct: 574 TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQ 633
Query: 588 EINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAG 647
+N +L+K+L ++GLW+E M + +G++ I IPDDL+++Y T +EIS +++
Sbjct: 634 IVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMA 693
Query: 648 SVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMG 706
+ R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+ A A F
Sbjct: 694 AERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA--ANPIQF--- 748
Query: 707 IDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
++N +++ K +E + N ++ S + + +EC C
Sbjct: 749 --TLNKEKLKDKEKVSKEEEKERNTAAMVCS-LENRDECLMC 787
>UNIPROTKB|F5H861 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01016072
ProteinModelPortal:F5H861 SMR:F5H861 Ensembl:ENST00000537197
ArrayExpress:F5H861 Bgee:F5H861 Uniprot:F5H861
Length = 454
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 180/476 (37%), Positives = 276/476 (57%)
Query: 275 MKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKI 334
MKRV W+L P + P L +G+EFE+ Y YE Q G+++ K + A LW I
Sbjct: 1 MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ---GRVR--KVVKAQQLWYAI 55
Query: 335 LSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTL 394
+ ETG P++ +KD+CN +S QQ++G I SNLCTEI TSK+E+ VCNL S+ L +
Sbjct: 56 IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNM 115
Query: 395 HMKNGKL-DPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLH 453
++ + D KL + ++ +R L+ +IDINYY V +A SN RHRP+G+G+ G D
Sbjct: 116 YVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFI 175
Query: 454 IMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKL 513
+M+ P+ S EA Q E I Y A AS +LA+E+G Y +Y+GS +GIL D
Sbjct: 176 LMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWN- 234
Query: 514 LEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTY 573
V ++ +WK L+ +I K+G+RNS +A PTA+ + I+G + SIEP
Sbjct: 235 -----------VTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYT 283
Query: 574 RNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYA 633
N++ + LSGEF +N +L+K+L ++GLW E M + +G++ I IPDDL+++Y
Sbjct: 284 SNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYK 343
Query: 634 TAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRS 692
T +EIS +++ + R +IDQSQSLNI+I+ + KL + W +GLKT YYLR+
Sbjct: 344 TVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRT 403
Query: 693 ISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
A A F + + + D+ + +K +E + N ++ S + + +EC C
Sbjct: 404 RPA--ANPIQFTLNKEKLK-DKEKV---SKEEEEKERNTAAMVCS-LENRDECLMC 452
>UNIPROTKB|Q71XL1 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 EMBL:AE017262 GenomeReviews:AE017262_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 HOGENOM:HOG000057034 RefSeq:YP_014777.1
ProteinModelPortal:Q71XL1 STRING:Q71XL1 GeneID:2798407
KEGG:lmf:LMOf2365_2187 PATRIC:20325695 OMA:RTHDLFT
ProtClustDB:PRK09209 Uniprot:Q71XL1
Length = 763
Score = 612 (220.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 182/597 (30%), Positives = 300/597 (50%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFS---KFINKGIDNKLLNPKLAEF 61
P + ARL + + K+ D KY Y +GI + + ++
Sbjct: 82 PEWEHFAARLYLNKLYKKASKNRFYNDDD--KYGSYVGLQESLGERGIYSGNILKNYSKE 139
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIR--IEMPQFFFMRIAMGLSLNE-- 117
+L + PE+D F Y GL +L RY L + R E+PQ ++ IA+ L NE
Sbjct: 140 DLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYLMQNEPK 198
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
R K + Y LS+ +TPTL N+G + QLSSC++ TV D L GI++S + A
Sbjct: 199 EKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVAR 258
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
+SK+ GG+G VRS G+ I+G G S GVIP++K +N+ AV+V+Q G+RKGAI YL
Sbjct: 259 VSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYL 318
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
+ +H DIE F++LR N GD R R HD+ A+ +PD+FM+ V ++ W LF P++V
Sbjct: 319 DVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKG 378
Query: 298 KFGKEF-EESY---ILYENQTKL-GKIKLFKKI-SALYLWRKILSMLFETGHPWITFKDA 351
+ ++F +ES E +L + KKI A+ + ++I+ ETG+P++ ++D
Sbjct: 379 WYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDE 438
Query: 352 CNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIR 411
N +P +H G+++SSNLCTEI N S + + + +G D I + K +
Sbjct: 439 VNRMNPNKHEGMVYSSNLCTEIMQNMSPTK----------MIQEIISG--DQIVITK--Q 484
Query: 412 IAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHI--MKIPYSSKEAIKFAD 469
++ N+ +N A+ L R + + + + + + + +P ++ K+
Sbjct: 485 AGDFVVCNLSSVNLGRAVVAEEGTLE-RLIEVEVRMLDNVIDLNELPVPQATITNQKYRS 543
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQ-GILPQDSLKLLEKERGS-KYLKV-- 525
+ ++ A +A + Y L++Q L + L +E+G+ K K
Sbjct: 544 IGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSD 603
Query: 526 -NMSE--------SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTY 573
N E S W++L + + G+RN+ VA+AP + + I G +ASI+P Y
Sbjct: 604 WNTGEYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIY 660
Score = 109 (43.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 635 AFEISPNWIIEAGSVRQKWIDQSQSLNIYI-SNKSGKKLDETYKLAWLRGLKTTYYLRS 692
A+++ + RQ+ +DQS S N Y+ S KL E + AW GLKTTYY+RS
Sbjct: 692 AYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRS 750
Score = 50 (22.7 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 26/105 (24%), Positives = 44/105 (41%)
Query: 645 EAGSVRQKWIDQSQSLNIY-ISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF 703
E R+ I +L+ Y K K+D+ + G + + +S+S N+ S
Sbjct: 667 EKKDYRRPVIAPDLNLSTYPYYEKGAYKVDQ-FASVRQNGRRQRHVDQSLSFNFYVPS-- 723
Query: 704 EMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESC 748
GI + L E+ + +N+ L+ + S DV ECE C
Sbjct: 724 --GIKASKLLELHMTAWNEGLKTTY-----YVRSNDIDVEECEWC 761
Score = 49 (22.3 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 32/134 (23%), Positives = 60/134 (44%)
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
L KE+ +KGL + ++A + +QI+ + IY+ AF + E R+
Sbjct: 623 LAKEVAEKGLRNAYLVAVAPNM--STAQIAGSTASIDPIYS-AF-----YYEEKKDYRRP 674
Query: 653 WIDQSQSLNIY-ISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN 711
I +L+ Y K K+D+ + G + + +S+S N+ S GI +
Sbjct: 675 VIAPDLNLSTYPYYEKGAYKVDQ-FASVRQNGRRQRHVDQSLSFNFYVPS----GIKASK 729
Query: 712 LDEISIKGYNKNLQ 725
L E+ + +N+ L+
Sbjct: 730 LLELHMTAWNEGLK 743
>TIGR_CMR|SO_2415 [details] [associations]
symbol:SO_2415 "ribonucleoside-diphosphate reductase, alpha
subunit" species:211586 "Shewanella oneidensis MR-1" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR005144 PROSITE:PS51161 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT
HOGENOM:HOG000278076 ProtClustDB:PRK09103 RefSeq:NP_718005.1
HSSP:P00452 ProteinModelPortal:Q8EEG7 SMR:Q8EEG7 GeneID:1170130
KEGG:son:SO_2415 PATRIC:23524447 Uniprot:Q8EEG7
Length = 762
Score = 635 (228.6 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 177/604 (29%), Positives = 292/604 (48%)
Query: 3 KDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEF 61
+ P Y + ARL ++ ++K+ FG Q + P Y ++ +K + G D +L E
Sbjct: 73 ESPDYQFLAARLAVFHLRKKAFG----QFEPPKLY-DHVTKLVELGKYDMHILQDYTRE- 126
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--E 117
L ++ + RD+ F+Y +K L +Y + + E QF ++ +A L +
Sbjct: 127 ELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPK 186
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
R + FY+ +S+F TP + T Q SSC L D L I +
Sbjct: 187 ETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246
Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
G+G + ++R+LGSPI+G G +PF K + +QGG R GA +
Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306
Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
WH+++E + L+ N G + R ++ + + L +R+IK + +LFSP DVP L++
Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESISLFSPSDVPGLYD 366
Query: 298 KFGK---EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
F + EFE Y+ YE + + K K + A+ L+ ++ TG +I D CN
Sbjct: 367 AFFEDQAEFERLYLQYEQDSSIRK----KTLKAVDLFSLMMQERASTGRIYIQNVDHCNT 422
Query: 355 RSP-QQHVGIIHSSNLCTEITLNTS--------KNEIGVCNLGSINLTLHMKNGKLDPIK 405
SP V I SNLC EI L T EI +C L ++NL +L+P+
Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGTITDLAELEPLA 482
Query: 406 LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAI 465
+A+R LDN++D Y +K A+ S++ R +G+G++ F + L + YS A
Sbjct: 483 -----DLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537
Query: 466 KFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKV 525
++ E I +Y AS LA+EKG ++ + + QGILP D+ K + S+ L
Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYKRDLDKICSEPLH- 596
Query: 526 NMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE 585
L+W+ LR+ IK++G+RNS A+ P+ T S I + IEP + +K++ G+
Sbjct: 597 -----LDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQ 651
Query: 586 FTEI 589
++
Sbjct: 652 LKQV 655
Score = 64 (27.6 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 615 DGNLSQISRIPDDLRKIYATAFEISPN-WIIEAGSVRQKWIDQSQSLNI-YISNK-SGKK 671
DG L Q+ D L+ Y +++ N ++ + QK++DQ+ S N Y + G+K
Sbjct: 649 DGQLKQVVPDFDTLKNNYELLWQMPSNEGYLQLVGIMQKFVDQAISANTNYDPARFEGRK 708
Query: 672 LDETYKL-----AWLRGLKTTYY 689
+ L A+ G+KT YY
Sbjct: 709 VPMQTLLKDLLNAYKLGVKTLYY 731
>TIGR_CMR|CPS_2328 [details] [associations]
symbol:CPS_2328 "ribonucleoside-diphosphate reductase,
alpha subunit" species:167879 "Colwellia psychrerythraea 34H"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
OMA:YKYGVKT HOGENOM:HOG000278076 ProtClustDB:PRK09103
RefSeq:YP_269048.1 ProteinModelPortal:Q482G9 SMR:Q482G9
STRING:Q482G9 GeneID:3522540 KEGG:cps:CPS_2328 PATRIC:21467749
BioCyc:CPSY167879:GI48-2393-MONOMER Uniprot:Q482G9
Length = 756
Score = 625 (225.1 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 194/669 (28%), Positives = 319/669 (47%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
E+ P Y + ARL ++ ++K+ +G Q + P Y ++ K + G ++ L +
Sbjct: 72 EETPDYQYLAARLAVFHLRKKAYG----QFEPPALY-DHVVKLVEAGKYDQHLLADYTKD 126
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLNE-- 117
+ +S+ + RDL F+Y +K L +Y + + G E QF ++ ++ L
Sbjct: 127 DFEHMSSFMDHSRDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQFLYILVSACLFAKYPV 186
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
+R + FY+ +S F TP + T Q SSC L D L I + +A+
Sbjct: 187 ESRLRYVEDFYHAISRFKISLPTPIMAGVRTPTRQFSSCVLIECGDSLDSI--NATSSAI 244
Query: 178 LSKYAG---GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAIC 234
+ KY G+G + ++R+LGS I+ G IPF K + +QGG R GA
Sbjct: 245 V-KYVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKSCSQGGVRGGAAT 303
Query: 235 AYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPD 294
+ WH+++E + L+ N G + R ++ + L +R+IK + TLFSP DVP
Sbjct: 304 LFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGGSITLFSPSDVPG 363
Query: 295 LHNKFGKE---FEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDA 351
L++ F ++ FE Y+ YEN + K K+I A+ L+ TG ++ D
Sbjct: 364 LYDAFFEDQEKFERLYVQYENDDSIRK----KRIKAIELFTLFAQERASTGRIYLQNVDH 419
Query: 352 CNIRSP-QQHVGIIHSSNLCTEITLNTSK-NEIGVCNLGSINL-TLHMKN-GKLDPI-KL 406
CN SP I SNLC EI L T N+I N G I L TL N G +D + +L
Sbjct: 420 CNTHSPFDSSKAAIRQSNLCLEIALPTKPMNDINDEN-GEIALCTLSAFNLGAIDSLDEL 478
Query: 407 KKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIK 466
+ +A+R LD+++D Y + A+ +++ R +G+G++ + L + YS+ A
Sbjct: 479 EGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIGVINYAYYLAKNGLYYSNGSANN 538
Query: 467 FADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVN 526
++ E I +Y A+ ELA+E+G +D +L +GILP D+ K + + L
Sbjct: 539 LTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKGILPIDTYKKTIDDITGEPLH-- 596
Query: 527 MSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF 586
L+W+ LR IKK G+RNS A+ P+ T S I + IEP + IK++ G
Sbjct: 597 ----LDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIEPPRGLISIKASKDGVL 652
Query: 587 TEINRYLVKELKK-KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIE 645
++ V E +K KG ++ ++ N+ G L + + + + + PN E
Sbjct: 653 KQV----VPEYEKLKGNYE--LLWNIPDNQGYLELVGIMQKFVDQAISANTNYDPNKF-E 705
Query: 646 AGSVRQKWI 654
G V K I
Sbjct: 706 GGKVPVKQI 714
Score = 68 (29.0 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 615 DGNLSQISRIPDDLRKIYATAFEISPNW-IIEAGSVRQKWIDQSQSLNI-YISNK--SGK 670
DG L Q+ + L+ Y + I N +E + QK++DQ+ S N Y NK GK
Sbjct: 649 DGVLKQVVPEYEKLKGNYELLWNIPDNQGYLELVGIMQKFVDQAISANTNYDPNKFEGGK 708
Query: 671 -KLDETYK---LAWLRGLKTTYY 689
+ + K A+ G+KT YY
Sbjct: 709 VPVKQILKDILTAYKLGVKTLYY 731
>TIGR_CMR|CHY_0676 [details] [associations]
symbol:CHY_0676 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent, intein-containing" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=ISS] InterPro:IPR000788 InterPro:IPR004042
InterPro:IPR006141 InterPro:IPR006142 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR00379 PROSITE:PS50817 PROSITE:PS50819 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260
GO:GO:0004519 GO:GO:0031419 InterPro:IPR003587 SMART:SM00306
GO:GO:0016539 TIGRFAMs:TIGR01445 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
RefSeq:YP_359531.1 STRING:Q3AEA3 GeneID:3727979 KEGG:chy:CHY_0676
PATRIC:21274485 OMA:IFDAVKH BioCyc:CHYD246194:GJCN-676-MONOMER
Uniprot:Q3AEA3
Length = 1101
Score = 325 (119.5 bits), Expect = 1.1e-65, Sum P(4) = 1.1e-65
Identities = 76/213 (35%), Positives = 120/213 (56%)
Query: 83 LKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESN-----REKCAIKFYNLLSSFNF 136
LK+L RY E G IE P+ F R+A ++ E N E+ A +FYN +++ +F
Sbjct: 9 LKVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNFMTALDF 68
Query: 137 MCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLG 196
+ +TPTL N+G QLS+C++ V D + IF+++K +AL+ K GG G ++++R+ G
Sbjct: 69 LPNTPTLVNAGRPLGQLSACFVLPVGDSMEEIFDAVKYSALIHKSGGGTGFSFSRLRAKG 128
Query: 197 SPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGD 256
+ ++ T G + G + F+KV N AV QGG R+GA L H DI EFI + +
Sbjct: 129 ARVRSTGGIASGPVSFMKVFNAATEAVKQGGVRRGANMGVLRCDHPDILEFITAK----E 184
Query: 257 DRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
D R + NI++ + D FMK + + + L P
Sbjct: 185 DNRDITNFNISVALTDKFMKALEEDGEYELIEP 217
Score = 265 (98.3 bits), Expect = 1.1e-65, Sum P(4) = 1.1e-65
Identities = 52/117 (44%), Positives = 79/117 (67%)
Query: 385 CNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLG 444
CNLGSINL +K+G++D L+KT+++A+R LDNVID+N+Y + + + + R +GLG
Sbjct: 627 CNLGSINLANMVKDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTRKIGLG 686
Query: 445 IMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLW 501
+MGF D L + IPY S+EA+ AD+ ME I + AS ELA +G + ++ S+W
Sbjct: 687 VMGFADMLIKLNIPYDSEEALNLADKVMEFINKKSKEASAELARVRGTFPAWKKSVW 743
Score = 193 (73.0 bits), Expect = 1.1e-65, Sum P(4) = 1.1e-65
Identities = 48/161 (29%), Positives = 87/161 (54%)
Query: 533 WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG--EFTEIN 590
WKK K +RN+ IAPT +IS I GVS+ IEP + L K ++ + E++
Sbjct: 738 WKKSVWAKKGLKLRNATTTTIAPTGSISIIAGVSSGIEPVFA-LAFKRHILDRKDIVEVH 796
Query: 591 RYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVR 650
R + ++ G + E ++ + G ++ I+ +P++ ++++ TA +I+P W ++ +V
Sbjct: 797 RLFEQHARENGYYSEKLMNEVAK-TGRITGIAGVPEEAKRLFVTALDIAPEWHVKMQAVF 855
Query: 651 QKWIDQSQSLNIYISNKSG-KKLDETYKLAWLRGLK--TTY 688
QK D + S I + N + + + E+Y LA+ G K T Y
Sbjct: 856 QKHTDNAVSKTINMPNSATVEDVKESYLLAYKLGCKGLTVY 896
Score = 67 (28.6 bits), Expect = 1.1e-65, Sum P(4) = 1.1e-65
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 295 LHNKFGKEFEES--YILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDAC 352
L +KF K EE Y L E T G++ ++ A ++ +I ++ G P + F D
Sbjct: 198 LTDKFMKALEEDGEYELIEPST--GEV--VGRLRAREVFERIARNAWKNGEPGVIFIDRI 253
Query: 353 NIRSPQQHVGIIHSSNLC 370
N + +G I S+N C
Sbjct: 254 NAANVVPELGEIESTNPC 271
>UNIPROTKB|P00452 [details] [associations]
symbol:nrdA species:83333 "Escherichia coli K-12"
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA;IDA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IDA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 PDB:1QFN PDBsum:1QFN GO:GO:0009263
EMBL:K02672 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 OMA:YKYGVKT EMBL:X06999 PIR:H64993
RefSeq:NP_416737.1 RefSeq:YP_490473.1 PDB:1R1R PDB:1RLR PDB:2R1R
PDB:2X0X PDB:2XAK PDB:2XAP PDB:2XAV PDB:2XAW PDB:2XAX PDB:2XAY
PDB:2XAZ PDB:2XO4 PDB:2XO5 PDB:3R1R PDB:3UUS PDB:4ERM PDB:4ERP
PDB:4R1R PDB:5R1R PDB:6R1R PDB:7R1R PDBsum:1R1R PDBsum:1RLR
PDBsum:2R1R PDBsum:2X0X PDBsum:2XAK PDBsum:2XAP PDBsum:2XAV
PDBsum:2XAW PDBsum:2XAX PDBsum:2XAY PDBsum:2XAZ PDBsum:2XO4
PDBsum:2XO5 PDBsum:3R1R PDBsum:3UUS PDBsum:4ERM PDBsum:4ERP
PDBsum:4R1R PDBsum:5R1R PDBsum:6R1R PDBsum:7R1R
ProteinModelPortal:P00452 SMR:P00452 DIP:DIP-584N IntAct:P00452
MINT:MINT-1233906 PaxDb:P00452 PRIDE:P00452
EnsemblBacteria:EBESCT00000000432 EnsemblBacteria:EBESCT00000016572
GeneID:12933136 GeneID:946612 KEGG:ecj:Y75_p2196 KEGG:eco:b2234
PATRIC:32119827 EchoBASE:EB0654 EcoGene:EG10660
HOGENOM:HOG000278076 ProtClustDB:PRK09103
BioCyc:EcoCyc:NRDA-MONOMER BioCyc:ECOL316407:JW2228-MONOMER
BioCyc:MetaCyc:NRDA-MONOMER SABIO-RK:P00452
EvolutionaryTrace:P00452 Genevestigator:P00452 Uniprot:P00452
Length = 761
Score = 614 (221.2 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 183/607 (30%), Positives = 288/607 (47%)
Query: 5 PVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAEFNL 63
P Y + ARL ++ ++K+ +G Q + P Y ++ K + G DN LL E
Sbjct: 75 PDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLEDYTEE-EF 128
Query: 64 SLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN--ESN 119
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 129 KQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRET 188
Query: 120 REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
R + +FY+ +S+F TP + T Q SSC L D L I + +A++
Sbjct: 189 RLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSI--NATSSAIV- 245
Query: 180 KYAG---GLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
KY G+G + ++R+LGSPI+G G IPF K + +QGG R GA +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH+++E + L+ N G + R M+ + + L R++K TLFSP DVP L+
Sbjct: 306 YPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLY 365
Query: 297 NKF---GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F +EFE Y YE + K +++ A+ L+ ++ TG +I D CN
Sbjct: 366 DAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITL--------NTSKNEIGVCNLGSINLTLHMKNGKLDPI 404
SP + + SNLC EI L N EI +C L + NL + N LD
Sbjct: 422 THSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-INN--LD-- 476
Query: 405 KLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEA 464
+L++ +A+R LD ++D Y + AK + R +G+G++ F L YS A
Sbjct: 477 ELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSA 536
Query: 465 IKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLK 524
++ E I YY AS ELA+E+G ++ + + +GILP D+ K K L
Sbjct: 537 NNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK--------KDLD 588
Query: 525 VNMSESLN--WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNL 582
+E L+ W+ LR IK G+RNS A+ P+ T S I + IEP + IK++
Sbjct: 589 TIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASK 648
Query: 583 SGEFTEI 589
G ++
Sbjct: 649 DGILRQV 655
Score = 177 (67.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 77/279 (27%), Positives = 126/279 (45%)
Query: 375 LNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYS 434
+N EI +C L + NL + N LD +L++ +A+R LD ++D Y + AK
Sbjct: 452 VNDENGEIALCTLSAFNLGA-INN--LD--ELEELAILAVRALDALLDYQDYPIPAAKRG 506
Query: 435 NLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYS 494
+ R +G+G++ F L YS A ++ E I YY AS ELA+E+G
Sbjct: 507 AMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP 566
Query: 495 SYDGSLWDQGILPQDSLKLLEKERGSKYLKVN---MSESLNWKKLRNRIKKFGMRN---- 547
++ + + +GILP D+ K ++ L + + ES+ LRN M +
Sbjct: 567 WFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSS 626
Query: 548 --SNCV-AIAPTATISNII----GVSASIEPTYRNLHIKSNLSGEFTEINRYL-VKELKK 599
SN I P +I G+ + P Y +LH L E + YL + + +
Sbjct: 627 QISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQ 686
Query: 600 KGLWDESMIANLKYFDGNLSQISRIP-DDLRKIYATAFE 637
K + D+S+ AN Y D + ++P L K TA++
Sbjct: 687 KFI-DQSISANTNY-DPSRFPSGKVPMQQLLKDLLTAYK 723
Score = 69 (29.3 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 615 DGNLSQISRIPD--DLRKIYATAFEISPN-WIIEAGSVRQKWIDQSQSLNI-YISNK--S 668
DG L Q+ +PD L Y +E+ N ++ + QK+IDQS S N Y ++ S
Sbjct: 649 DGILRQV--VPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPS 706
Query: 669 GK-KLDETYK---LAWLRGLKTTYY 689
GK + + K A+ G+KT YY
Sbjct: 707 GKVPMQQLLKDLLTAYKFGVKTLYY 731
>UNIPROTKB|Q9KSK0 [details] [associations]
symbol:VC1256 "Ribonucleoside-diphosphate reductase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 604 (217.7 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
Identities = 175/608 (28%), Positives = 284/608 (46%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAE 60
E+ P Y + ARL ++ ++K+ +G Q + P + +K + KG D LL E
Sbjct: 72 EETPDYQYLAARLAVFHLRKKAYG----QYEPPTLLA-HVTKMVEKGKYDKHLLEDYTRE 126
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN-- 116
L L+ + RDL F+Y +K L +YF+ + G E QF ++ +A L
Sbjct: 127 -ELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACLFAKYP 185
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
+ R +FY+ S+F TP + T Q SSC L D L I +
Sbjct: 186 KETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
G+G + ++R+LGS I+G G IPF K +QGG R GA +
Sbjct: 246 RYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATVF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH + E + L+ N G + R M+ + + L KR+++ TLFSP DVP L+
Sbjct: 306 YPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFSPSDVPGLY 365
Query: 297 NKFGK---EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F + EFE Y+ YEN + K K + AL ++ ++ TG +I D CN
Sbjct: 366 DAFFQDQDEFERLYVKYENDPSIKK----KTVKALEIFTLLMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITLNTS--------KNEIGVCNLGSINLTLHMKNGKLDPI 404
SP V + SNLC EI L TS EI +C L + NL G ++ +
Sbjct: 422 THSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFNL------GAIESL 475
Query: 405 K-LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
++ + +R LD ++D Y + A+ S++ R +G+G++ + L + YS
Sbjct: 476 DDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNGVKYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E + Y+ AS +LA+E+GR + + + +G++P D+ K K +
Sbjct: 536 ANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYK--------KDI 587
Query: 524 KVNMSESLN--WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ +E L+ W KLR+ I + G+RNS A+ P+ T S I + IEP + +K++
Sbjct: 588 DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSVKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILKQV 655
Score = 65 (27.9 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 615 DGNLSQISRIPD--DLRKIYATAFEISPN-WIIEAGSVRQKWIDQSQSLNIYI--SN-KS 668
DG L Q+ +P+ L++ Y + I N + + QK++DQ+ S N SN S
Sbjct: 649 DGILKQV--VPEFTRLKENYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYDPSNFDS 706
Query: 669 GK----KLDETYKLAWLRGLKTTYY 689
GK KL + A+ G+KT YY
Sbjct: 707 GKVPMKKLLQDLLTAYKFGVKTLYY 731
>TIGR_CMR|VC_1256 [details] [associations]
symbol:VC_1256 "ribonucleoside-diphosphate reductase, alpha
subunit" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 604 (217.7 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
Identities = 175/608 (28%), Positives = 284/608 (46%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKG-IDNKLLNPKLAE 60
E+ P Y + ARL ++ ++K+ +G Q + P + +K + KG D LL E
Sbjct: 72 EETPDYQYLAARLAVFHLRKKAYG----QYEPPTLLA-HVTKMVEKGKYDKHLLEDYTRE 126
Query: 61 FNLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLN-- 116
L L+ + RDL F+Y +K L +YF+ + G E QF ++ +A L
Sbjct: 127 -ELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACLFAKYP 185
Query: 117 ESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENA 176
+ R +FY+ S+F TP + T Q SSC L D L I +
Sbjct: 186 KETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245
Query: 177 LLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAY 236
G+G + ++R+LGS I+G G IPF K +QGG R GA +
Sbjct: 246 RYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATVF 305
Query: 237 LETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLH 296
WH + E + L+ N G + R M+ + + L KR+++ TLFSP DVP L+
Sbjct: 306 YPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFSPSDVPGLY 365
Query: 297 NKFGK---EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACN 353
+ F + EFE Y+ YEN + K K + AL ++ ++ TG +I D CN
Sbjct: 366 DAFFQDQDEFERLYVKYENDPSIKK----KTVKALEIFTLLMQERASTGRIYIQNVDHCN 421
Query: 354 IRSP-QQHVGIIHSSNLCTEITLNTS--------KNEIGVCNLGSINLTLHMKNGKLDPI 404
SP V + SNLC EI L TS EI +C L + NL G ++ +
Sbjct: 422 THSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFNL------GAIESL 475
Query: 405 K-LKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE 463
++ + +R LD ++D Y + A+ S++ R +G+G++ + L + YS
Sbjct: 476 DDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNGVKYSDGS 535
Query: 464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYL 523
A ++ E + Y+ AS +LA+E+GR + + + +G++P D+ K K +
Sbjct: 536 ANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYK--------KDI 587
Query: 524 KVNMSESLN--WKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSN 581
+ +E L+ W KLR+ I + G+RNS A+ P+ T S I + IEP + +K++
Sbjct: 588 DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSVKAS 647
Query: 582 LSGEFTEI 589
G ++
Sbjct: 648 KDGILKQV 655
Score = 65 (27.9 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 615 DGNLSQISRIPD--DLRKIYATAFEISPN-WIIEAGSVRQKWIDQSQSLNIYI--SN-KS 668
DG L Q+ +P+ L++ Y + I N + + QK++DQ+ S N SN S
Sbjct: 649 DGILKQV--VPEFTRLKENYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYDPSNFDS 706
Query: 669 GK----KLDETYKLAWLRGLKTTYY 689
GK KL + A+ G+KT YY
Sbjct: 707 GKVPMKKLLQDLLTAYKFGVKTLYY 731
>TIGR_CMR|NSE_0411 [details] [associations]
symbol:NSE_0411 "ribonucleoside-diphosphate reductase,
alpha subunit" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 RefSeq:YP_506298.1 STRING:Q2GDZ8
GeneID:3932191 KEGG:nse:NSE_0411 PATRIC:22680881
HOGENOM:HOG000064500 OMA:EWDLISP ProtClustDB:PRK09102
BioCyc:NSEN222891:GHFU-434-MONOMER Uniprot:Q2GDZ8
Length = 605
Score = 335 (123.0 bits), Expect = 8.7e-64, Sum P(3) = 8.7e-64
Identities = 82/222 (36%), Positives = 121/222 (54%)
Query: 71 LPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNL 130
L RD G +L DRY + E Q F R+A S + K A + Y+
Sbjct: 20 LHARDSFLTDFGKAVLKDRYLQNGEDY-----QGLFARVAKYYS----DDPKHACRLYDY 70
Query: 131 LSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWT 190
+S+ FM +TP L N GT R SC+L+ D L GI EN L+ + GG+G+ W
Sbjct: 71 MSNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWG 130
Query: 191 QVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIEL 250
+RS+G +K +G++ G+IPF+ V N + +A++QG R+G+ YL H +I EFI+L
Sbjct: 131 NLRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIIEFIDL 189
Query: 251 RKNTGDD-RRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291
RK TG D R+ +++ A+ + D FMK V++ W L SP D
Sbjct: 190 RKPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKD 231
Score = 239 (89.2 bits), Expect = 8.7e-64, Sum P(3) = 8.7e-64
Identities = 54/156 (34%), Positives = 92/156 (58%)
Query: 551 VAIAPTATISNIIG-VSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+A+APTA+IS I G S IEP N+ + LSG F N++L L++KG + + +
Sbjct: 429 IAVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAALLERKGKNTDCVWS 488
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI-SNKS 668
++ +G++ + + ++ + ++ TA+E+ W+IE + R +I QSQS+N+++ SN
Sbjct: 489 SIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQSQSVNLFLHSNIH 548
Query: 669 GKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFE 704
K+L + L W +GLK+ YY RS S A K + E
Sbjct: 549 KKELSNLHFLGWKKGLKSLYYCRSKSIQRAYKISQE 584
Score = 195 (73.7 bits), Expect = 8.7e-64, Sum P(3) = 8.7e-64
Identities = 60/180 (33%), Positives = 89/180 (49%)
Query: 325 ISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGI---IHSSNLCTEITLNTSKNE 381
+ A +W +IL+ ETG P+I F D P + + + SNLC+EITL T K+
Sbjct: 238 VGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMSNLCSEITLTTGKDH 297
Query: 382 I-----GVCNLGSINLTLHMKNGKLDPIKLKKT-IRIAMRMLDNVI-DINYYA---VKKA 431
+ +C L S+NL K D + + +R M LDNV+ D A + +A
Sbjct: 298 LDNHRTAICCLSSLNLE------KFDEWEHNEQFVRDVMHFLDNVLEDFIRKAPDCMHRA 351
Query: 432 KYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG 491
+YS +R R +GLG+MGF L IP+ S A + + I + A S E+A E+G
Sbjct: 352 RYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFKKIKHEADKISKEMALERG 411
>TIGR_CMR|GSU_1871 [details] [associations]
symbol:GSU_1871 "ribonucleoside-diphosphate reductase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031419
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH ProtClustDB:PRK08665 RefSeq:NP_952920.1
ProteinModelPortal:Q74C05 GeneID:2686773 KEGG:gsu:GSU1871
PATRIC:22026607 BioCyc:GSUL243231:GH27-1839-MONOMER Uniprot:Q74C05
Length = 743
Score = 297 (109.6 bits), Expect = 1.8e-63, Sum P(3) = 1.8e-63
Identities = 68/214 (31%), Positives = 117/214 (54%)
Query: 85 ILYDRYFLHIEGIRI-EMPQFFFMRIAMGLSLNESNREK------CAIKFYNLLSSFNFM 137
+L RY G + E P F R+A ++ + N +K A +FY L++SF F+
Sbjct: 21 VLEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYELMTSFEFL 80
Query: 138 CSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGS 197
++PTL N+G QLS+C++ V D + IF+++K AL+ K GG G ++++R
Sbjct: 81 PNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKYTALIHKSGGGTGFSFSRLRPAHD 140
Query: 198 PIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDD 257
++ T+G S G I F++V + + QGG R+GA L H DI +FI + DD
Sbjct: 141 VVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCK----DD 196
Query: 258 RRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD 291
++ ++ NI++ + + FM+ V + + + L +P D
Sbjct: 197 QKHLNNFNISVGLTEAFMEAVERDADYDLINPRD 230
Score = 295 (108.9 bits), Expect = 1.8e-63, Sum P(3) = 1.8e-63
Identities = 63/179 (35%), Positives = 106/179 (59%)
Query: 325 ISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGV 384
++A ++ +I+ ++ G P I F D N +P HVG+I S+N C E L ++
Sbjct: 237 LNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHVGVIESTNPCGEQPLLPYES---- 292
Query: 385 CNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLG 444
CNLGSINL +KNG ++ +L+ +R+A+ LDNVI++N Y + + +R +GLG
Sbjct: 293 CNLGSINLGKMVKNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQISEMTRANRKIGLG 352
Query: 445 IMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQ 503
+MG+ D L ++ IPY+S +AI ++ M I + S ELA +G + ++ GS++D+
Sbjct: 353 VMGWADMLILLGIPYNSPQAISLGEKVMRFINDEGHVYSRELAAVRGSFPNFAGSIYDR 411
Score = 186 (70.5 bits), Expect = 1.8e-63, Sum P(3) = 1.8e-63
Identities = 45/155 (29%), Positives = 80/155 (51%)
Query: 538 NRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEF-TEINRYLVKE 596
+R + +RN+ IAPT TIS I S+ +EP + I+ L E+N +
Sbjct: 410 DRASEGPIRNATVTTIAPTGTISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPIFEEV 469
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
+++G + E ++ + G + + IP+D+RKI+ TA +I+P IE + QK+ D
Sbjct: 470 ARQRGFYSEELMQKIARH-GTIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQKYTDN 528
Query: 657 SQSLNIYISNKSG-KKLDETYKLAWLRGLK-TTYY 689
+ S + N + + +++ Y+LA+ G K T Y
Sbjct: 529 AVSKTVNFPNSAAIEDVEKVYRLAYKSGCKGVTIY 563
Score = 44 (20.5 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 26 KEIKQIDIPIKYKEYFSKFINKGIDNKLLNPK 57
K + +I + E F + + + D L+NP+
Sbjct: 198 KHLNNFNISVGLTEAFMEAVERDADYDLINPR 229
Score = 37 (18.1 bits), Expect = 6.8e-48, Sum P(3) = 6.8e-48
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 519 GSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSA 567
G Y+ +N ++ ++ K G +S C AI +++ GV A
Sbjct: 613 GPLYVTINEDKAGLFELFTTMGKAGGCASSQCEAIGRMVSLAWRSGVQA 661
>TIGR_CMR|DET_0623 [details] [associations]
symbol:DET_0623 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_181365.1
ProteinModelPortal:Q3Z8T4 STRING:Q3Z8T4 GeneID:3230018
KEGG:det:DET0623 PATRIC:21608313 OMA:FIDRIND ProtClustDB:CLSK837372
BioCyc:DETH243164:GJNF-624-MONOMER Uniprot:Q3Z8T4
Length = 599
Score = 314 (115.6 bits), Expect = 1.5e-62, Sum P(3) = 1.5e-62
Identities = 72/187 (38%), Positives = 120/187 (64%)
Query: 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSK 379
++ ++++A ++ I+ ++TG P + F D N +P +G I + C E TL +
Sbjct: 234 EVVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHVSGCGEQTLLPYE 293
Query: 380 NEIGVCNLGSINLTLHMK-NGK---LDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSN 435
+ CNLGSI+L +K +G+ +D KL +T+++A+R LDNVID+N + + + +
Sbjct: 294 S----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNRFPTPEIEKAT 349
Query: 436 LRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSS 495
LR+R +GLG+MGF D L +M IPY+S+EAI ADQ ME I ++ AS++LAE +G + +
Sbjct: 350 LRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKLAEARGSFPA 409
Query: 496 YDGSLWD 502
Y+GS++D
Sbjct: 410 YEGSIYD 416
Score = 234 (87.4 bits), Expect = 1.5e-62, Sum P(3) = 1.5e-62
Identities = 62/223 (27%), Positives = 110/223 (49%)
Query: 75 DLQFNYLGLKILYDRYFLH-IEGIRIEMPQFFFMRIAMGLSLNE------SNREKCAIKF 127
D++ + ++L RY G IE P+ F R+A ++ E ++ + +F
Sbjct: 13 DVRLSTTAKRVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEF 72
Query: 128 YNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGN 187
Y +S F+ ++PTL N+G QLS+C++ V D + IF+++K+ AL+ K GG G
Sbjct: 73 YQAMSRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGF 132
Query: 188 DWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEF 247
++ +R G + + G + + + + A V QGG R+G A L+ H DI +F
Sbjct: 133 SFSNLRPAGDKVGELTEVAGGPVSVINIFSAAADYVRQGGVRRGCNAAILDVTHPDILKF 192
Query: 248 IELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
I + GD T+ I++ V FM +V + + +P+
Sbjct: 193 ISCK---GDPNALTN-FYISVVVTREFMTKVRSGEDYDIINPH 231
Score = 212 (79.7 bits), Expect = 1.5e-62, Sum P(3) = 1.5e-62
Identities = 54/176 (30%), Positives = 91/176 (51%)
Query: 545 MRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE-FTEINRYLVKELKKKGLW 603
MRN+ C +IAPT T+S I GVS+ IEP++ + +++ L GE EIN Y + +++G
Sbjct: 423 MRNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFH 482
Query: 604 DESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIY 663
+ + L +L + +PD L+++ TA I P W I + QK+ D + S +
Sbjct: 483 SKELFEKL-VSSNHLHDMECVPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVN 541
Query: 664 ISNKSGKK-LDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVN--LDEIS 716
S+++ ++ + + LA+ +GLK R S E G+ V+ LD S
Sbjct: 542 FSHEATREDMANVFNLAYDKGLKGITVYRDGSRAAQPLCTSESGVKLVDQYLDNCS 597
>TIGR_CMR|BA_1371 [details] [associations]
symbol:BA_1371 "ribonucleoside-diphosphate reductase, alpha
subunit, group I intron-containing" species:198094 "Bacillus
anthracis str. Ames" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=ISS] [GO:0009265 "2'-deoxyribonucleotide biosynthetic
process" evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165
InterPro:IPR026459 TIGRFAMs:TIGR04170
EnsemblBacteria:EBBACT00000012288 PATRIC:18780342
ProtClustDB:PRK07632 Uniprot:Q81TB6
Length = 694
Score = 539 (194.8 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 173/578 (29%), Positives = 284/578 (49%)
Query: 58 LAEFNLSLLSNA--LLPERDLQF-NYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAM-GL 113
L E+NL + + + +F +Y+ Y Y L + + + + R+A+ L
Sbjct: 61 LDEYNLEEVEEVYNIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSL 119
Query: 114 SLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSG-TIRSQLSSCYLSTVPDDLYGIFESI 172
L + K A +F +++ N+ +TPT N+G + R ++ SC+L + D L I +I
Sbjct: 120 YLGRGDVAK-AKQFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNI 178
Query: 173 KENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA 232
LSK GG+ + +++R+ G IKG + + GV+P +K++ D NQ G+RKGA
Sbjct: 179 NTAMQLSKIGGGVALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGA 238
Query: 233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDV 292
YL +H DI EF++ +K D++ R ++I I VP F + K + +F+PY V
Sbjct: 239 GAVYLNIFHWDIIEFLDSKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTV 298
Query: 293 PDLHNKFGKEFEESYI--LYENQTKLGKIKLFKK---ISALYLWRKILSMLFETGHPWIT 347
+ ++GK ++ I +Y+ K+K KK ISA + KI + E+G+P++
Sbjct: 299 ---YKEYGKHLDDIDIDEMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLM 353
Query: 348 FKDACNIRSPQQHVGIIHSSNLCTEI--TLNTSK-NEIGV---------CNLGSINLTLH 395
FK N + P + +G + SNLCTEI TS+ N+ G CNLGS+N+
Sbjct: 354 FKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNV 413
Query: 396 MKNGKLDPIKLKKTIRIAMRMLDNVIDI----NYYAVKKAKYSNLRHRPVGLGIMGFQDC 451
M+N ++ ++ + M L V D+ N VKKA N VGLG M
Sbjct: 414 MENKEI-----REAVHAGMEALTAVSDMTIIPNAPTVKKA---NDELHSVGLGAMNLHGY 465
Query: 452 LHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGR-YSSYDGSLWDQGILPQ-- 508
L KI Y S+EA +FA M+ YY+ S E+A+EKG + +D S + G +
Sbjct: 466 LAKNKIAYESEEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKY 525
Query: 509 ---DSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGV 565
D + EK + + +++ +W L+ +++K G+ NS +AIAPT +IS +
Sbjct: 526 ETTDYSPVTEKVQ-QLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNA 584
Query: 566 SASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLW 603
++S+ P I+S T Y + L K W
Sbjct: 585 TSSVMPIVSQ--IESRTYANATTY--YPMPYLSKDTFW 618
Score = 72 (30.4 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 632 YATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI-SNKSGKKLDETYKLAWLRGLKTTYYL 690
Y ++++++ +I+ + Q+ IDQ S +Y+ S+ S ++L Y A +GLK+ YY
Sbjct: 620 YKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYT 679
Query: 691 RS 692
R+
Sbjct: 680 RT 681
>TIGR_CMR|ECH_0459 [details] [associations]
symbol:ECH_0459 "ribonucleoside-diphosphate reductase,
alpha subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006260 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
HOGENOM:HOG000064500 ProtClustDB:PRK09102 RefSeq:YP_507276.1
STRING:Q2GH07 GeneID:3927177 KEGG:ech:ECH_0459 PATRIC:20576390
OMA:GALEKSI BioCyc:ECHA205920:GJNR-460-MONOMER Uniprot:Q2GH07
Length = 595
Score = 358 (131.1 bits), Expect = 6.8e-52, Sum P(3) = 6.8e-52
Identities = 91/266 (34%), Positives = 139/266 (52%)
Query: 73 ERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLS 132
ERD G +L DRY L E Q F+RI+ S N + ++ Y+ +S
Sbjct: 9 ERDNNLTAFGKAVLSDRYLLENEDY-----QQLFVRISEYYSDNPEHAQR----LYDYMS 59
Query: 133 SFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQV 192
FM +TP L N GT R SC+L+ D L GI EN L+ GG+G+ W +
Sbjct: 60 QLWFMPATPILSNGGTNRGLPVSCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYWGNL 119
Query: 193 RSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRK 252
RS+G ++G+ G++ G+IPF+ V N + +A++QG R+G+ YL WH +IEEF++LRK
Sbjct: 120 RSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDLRK 178
Query: 253 NTGDD-RRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD--------VPDLHNKF---G 300
TG D R+ +++ + + + FMK V W L SP D D+ K
Sbjct: 179 PTGGDPNRKALNIHHGVVLSNKFMKCVENDEPWDLISPKDQSVLFTIKARDIWIKILTTR 238
Query: 301 KEFEESYILYENQTKLGKIKLFKKIS 326
E E YIL+ +Q K +++K+++
Sbjct: 239 VETGEPYILFIDQVDNNKPEIYKRLN 264
Score = 251 (93.4 bits), Expect = 6.8e-52, Sum P(3) = 6.8e-52
Identities = 59/154 (38%), Positives = 93/154 (60%)
Query: 549 NCVAIAPTATISNIIG-VSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESM 607
N ++IAPTA+IS I G S IEP N+ L+G F N++L K LK KG +E +
Sbjct: 414 NKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLKLKGKDNEQV 473
Query: 608 IANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYI-SN 666
+++ +G++ + + ++ + I+ TA+E+ WIIE S R K+I Q+QS+NI++ +N
Sbjct: 474 WSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNIFLPAN 533
Query: 667 KSGKKLDETYKLAWLRGLKTTYYLRSISANYAKK 700
+ L + + LAW +GLK+ YY RS S A K
Sbjct: 534 VHKRYLHKIHFLAWRKGLKSLYYCRSKSIQRADK 567
Score = 226 (84.6 bits), Expect = 5.6e-37, Sum P(4) = 5.6e-37
Identities = 86/286 (30%), Positives = 138/286 (48%)
Query: 244 IEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTW------TLFSPYDVPDLHN 297
++ + L + G RR + + + +W P++ ++K T L + V L N
Sbjct: 141 VQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDLRKPTGGDPNRKALNIHHGVV-LSN 199
Query: 298 KFGK--EFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
KF K E +E + L + + LF I A +W KIL+ ETG P+I F D +
Sbjct: 200 KFMKCVENDEPWDLISPKDQS---VLFT-IKARDIWIKILTTRVETGEPYILFIDQVDNN 255
Query: 356 SPQQHVGI---IHSSNLCTEITLNT-----SKNEIGVCNLGSINLTLHMKNGKLDPIKLK 407
P+ + + I SNLCTEITL T +K+ +C L S+NL + + K + + ++
Sbjct: 256 KPEIYKRLNLDIKMSNLCTEITLTTGYDHLNKSRTAICCLASLNLEYY-EQWKDNSLFIE 314
Query: 408 KTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKF 467
+R +L + I+ +++AKYS +R R +G+G+MGF L IP+ S A +
Sbjct: 315 DVMRFLDNVLTDFIEKAPSEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIW 374
Query: 468 ADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKL 513
+ I +A AS +A EKG S D D GI+ + KL
Sbjct: 375 NKKIFSHIRKHADAASYNIAMEKG--SCLDAQ--DAGIVERFVNKL 416
Score = 44 (20.5 bits), Expect = 5.6e-37, Sum P(4) = 5.6e-37
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 58 LAEFNLSLLSNA-LLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLN 116
L F ++LS+ LL D Q ++ + Y H + + M Q +FM LS
Sbjct: 14 LTAFGKAVLSDRYLLENEDYQQLFVRISEYYSDNPEHAQRLYDYMSQLWFMPATPILSNG 73
Query: 117 ESNR 120
+NR
Sbjct: 74 GTNR 77
Score = 41 (19.5 bits), Expect = 6.8e-52, Sum P(3) = 6.8e-52
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 713 DEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
D++S K++++ K + N D NEC SCQ
Sbjct: 566 DKVSHGALEKSIEQYKQ----ITNF---DYNECLSCQ 595
>UNIPROTKB|P39452 [details] [associations]
symbol:nrdE species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=ISA] [GO:0015949
"nucleobase-containing small molecule interconversion"
evidence=IGI] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IGI]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;IGI] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IGI] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 GO:GO:0009263 EMBL:X79787
eggNOG:COG0209 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165 OMA:VSRIEIR
ProtClustDB:PRK08188 InterPro:IPR026459 TIGRFAMs:TIGR04170
EMBL:M31530 PIR:D65047 RefSeq:NP_417161.1 RefSeq:YP_490890.1
ProteinModelPortal:P39452 SMR:P39452 DIP:DIP-359N IntAct:P39452
PRIDE:P39452 EnsemblBacteria:EBESCT00000003305
EnsemblBacteria:EBESCT00000016977 GeneID:12930227 GeneID:947155
KEGG:ecj:Y75_p2618 KEGG:eco:b2675 PATRIC:32120740 EchoBASE:EB4158
EcoGene:EG20257 BioCyc:EcoCyc:NRDE-MONOMER
BioCyc:ECOL316407:JW2650-MONOMER BioCyc:MetaCyc:NRDE-MONOMER
Genevestigator:P39452 Uniprot:P39452
Length = 714
Score = 500 (181.1 bits), Expect = 8.9e-52, Sum P(2) = 8.9e-52
Identities = 158/562 (28%), Positives = 269/562 (47%)
Query: 45 INKGI-DNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLH-IEGIRIEMP 102
+N+G D +LN +F ++L ++A Q +LG Y Y L +G R
Sbjct: 67 VNEGYYDESVLNRYSRDFVITLFTHAHTSGFRFQ-TFLGAWKFYTSYTLKTFDGKRYL-- 123
Query: 103 QFFFMRIAM-GLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTI-RSQLSSCYLST 160
+ F R+ M L+L + + E A++ + + S F +TPT N G R +L SC+L
Sbjct: 124 EDFADRVTMVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLR 182
Query: 161 VPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVA 220
+ D++ I ++ LSK GG+ + +R G+PIK +S GVIP +K++ D
Sbjct: 183 IEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAF 242
Query: 221 VAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIK 280
NQ G R+GA YL H DI F++ ++ D++ R +++ + +PD+ +
Sbjct: 243 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKE 302
Query: 281 KSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKK-ISALYLWRKILSMLF 339
+ LFSPYDV + +GK F + I + ++ KK ++A ++++ + F
Sbjct: 303 NAQMALFSPYDVERV---YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQF 359
Query: 340 ETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGV------------CNL 387
E+G+P+I ++D N +P G I+ SNLC+EI S +E CNL
Sbjct: 360 ESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNL 417
Query: 388 GSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKYSNLRHRPVGLGIM 446
GS+N+ H +D +T+ A+R L V D+++ +V + N +GLG M
Sbjct: 418 GSLNIA-HT----MDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQM 472
Query: 447 GFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG------RYSSY-DGS 499
L I Y S EA+ F + I ++A S LA E+G + S Y G
Sbjct: 473 NLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGE 532
Query: 500 LWDQGILPQDSLKLLEKERGSKYLK--VNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTA 557
+ Q + Q + + + G + + + + W +LR+ + ++G+ N N A+ PT
Sbjct: 533 YFSQYL--QGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTG 590
Query: 558 TISNIIGVSASIEPTYRNLHIK 579
+IS I ++SI P + I+
Sbjct: 591 SISYINHATSSIHPIVAKVEIR 612
Score = 90 (36.7 bits), Expect = 8.9e-52, Sum P(2) = 8.9e-52
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 631 IYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKK-LDETYKLAWLRGLKTTYY 689
+Y A+EI II+ + + +DQ SL ++ + + + +++ AW +G+KT YY
Sbjct: 634 LYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYY 693
Query: 690 LR 691
+R
Sbjct: 694 IR 695
>UNIPROTKB|O53767 [details] [associations]
symbol:nrdZ "Ribonucleoside-diphosphate reductase NrdZ"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842573 GO:GO:0031419
InterPro:IPR005144 PROSITE:PS51161 PIR:A70933 RefSeq:NP_215084.1
RefSeq:NP_335005.1 RefSeq:YP_006513903.1 ProteinModelPortal:O53767
SMR:O53767 PRIDE:O53767 EnsemblBacteria:EBMYCT00000000981
EnsemblBacteria:EBMYCT00000071101 GeneID:13318445 GeneID:887666
GeneID:924988 KEGG:mtc:MT0596 KEGG:mtu:Rv0570 KEGG:mtv:RVBD_0570
PATRIC:18123012 TubercuList:Rv0570 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 OMA:QMATFDI ProtClustDB:CLSK790600
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
Uniprot:O53767
Length = 692
Score = 261 (96.9 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 69/230 (30%), Positives = 116/230 (50%)
Query: 67 SNALLPERD-LQFNYLGLKILYDRYFLHIE-GIRIEMPQFFFMRIAMGLSLNESNRE--- 121
+ ALL RD L+ + + +L +RY LH E G E R A ++ E E
Sbjct: 97 AKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGS 156
Query: 122 --KCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
+ A +F LL + F+ ++PTL NSGT L+ C++ + D L IF ++ + A L
Sbjct: 157 SRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQ 216
Query: 180 KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
+ GG G ++ +R G + T G + G + FL++ + A V+ GG+R+GA A L+
Sbjct: 217 RAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDV 276
Query: 240 WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
H DI +F+ + + + H N+++ V D F++ V + L +P
Sbjct: 277 SHPDICDFVTAKAESPSEL--PH-FNLSVGVTDAFLRAVERNGLHRLVNP 323
Score = 252 (93.8 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 60/180 (33%), Positives = 98/180 (54%)
Query: 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSK 379
K+ ++ A L+ I G P + F D N +P G I ++N C E+ L +
Sbjct: 327 KIVARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYE 386
Query: 380 NEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHR 439
+ CNLGSINL + +G++D +L++ +A+R LD+VID++ Y + + R
Sbjct: 387 S----CNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATR 442
Query: 440 PVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGS 499
+GLG+MG + L + IPY S+EA++ A + M I A+ AS LAEE+G + ++ S
Sbjct: 443 KIGLGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDS 502
Score = 149 (57.5 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 39/155 (25%), Positives = 75/155 (48%)
Query: 538 NRIKKFG-MRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKE 596
+R + G RN+ ++APT TIS I G +A IEP + ++ + E+N +
Sbjct: 502 SRFARSGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRL 561
Query: 597 LKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ 656
+ +G + + +IA + G + R+P ++R + TA EI+P W + + Q+ ++
Sbjct: 562 ARDRGFYRDELIAEIAQ-RGGVRGYPRLPAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEA 620
Query: 657 SQSLNIYI-SNKSGKKLDETYKLAWLRGLK--TTY 688
+ S + + + + + Y AW +K T Y
Sbjct: 621 AVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVY 655
>TIGR_CMR|APH_0331 [details] [associations]
symbol:APH_0331 "ribonucleoside-diphosphate reductase,
alpha subunit" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000064500
ProtClustDB:PRK09102 RefSeq:YP_504939.1 ProteinModelPortal:Q2GL12
STRING:Q2GL12 GeneID:3931250 KEGG:aph:APH_0331 PATRIC:20949246
OMA:CEIIEYS BioCyc:APHA212042:GHPM-360-MONOMER Uniprot:Q2GL12
Length = 603
Score = 354 (129.7 bits), Expect = 3.4e-50, Sum P(2) = 3.4e-50
Identities = 90/264 (34%), Positives = 138/264 (52%)
Query: 74 RDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSS 133
RD G +L DRY L E Q F+R+A S ++S A + Y+ +S
Sbjct: 17 RDDNLTNFGKAVLSDRYLLEKEDY-----QQLFVRVAQYYS-DDSQH---AQRLYDYMSK 67
Query: 134 FNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVR 193
FM +TP L N GT R SC+L+ D L GI EN L+ GG+G+ W +R
Sbjct: 68 LWFMPATPILSNGGTSRGLPISCFLNETEDSLAGILNLWNENVWLASRGGGIGSYWGNLR 127
Query: 194 SLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKN 253
S+G ++G+ G++ G+IPF+ V N + +A++QG R+G+ YL WH +IEEF+++R+
Sbjct: 128 SIGERVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDIRRP 186
Query: 254 TGDD-RRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYD--------VPDLHNKF---GK 301
TG D R+ +++ + + D FM+ V TW L SP D DL K
Sbjct: 187 TGGDPNRKALNIHHGVLLSDEFMEAVEHDKTWDLLSPKDKCVISTVKARDLWIKILTTRV 246
Query: 302 EFEESYILYENQTKLGKIKLFKKI 325
E E YI++ + K +++KK+
Sbjct: 247 ETGEPYIIFVDAVNRCKPEIYKKL 270
Score = 242 (90.2 bits), Expect = 3.4e-50, Sum P(2) = 3.4e-50
Identities = 54/157 (34%), Positives = 92/157 (58%)
Query: 551 VAIAPTATISNIIG-VSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIA 609
+++APTA+IS I G S IEP N+ L+G F N++L + LK KG D+ + +
Sbjct: 423 LSVAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQELLKSKGKDDDQVWS 482
Query: 610 NLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSG 669
++ +G++ + + D + ++ TA+E+ W+IE R +I Q+QS+NI++
Sbjct: 483 SISTNEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYICQAQSVNIFLPAGVH 542
Query: 670 KK-LDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM 705
K+ L + + LAW +GLK+ YY+RS S A K + E+
Sbjct: 543 KRYLHKVHFLAWKKGLKSLYYMRSKSVQRADKVSHEV 579
Score = 225 (84.3 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 89/306 (29%), Positives = 142/306 (46%)
Query: 205 RSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDM 264
R G+ + + + V GK G I + ++ + L + G RR + +
Sbjct: 115 RGGGIGSYWGNLRSIGERVRGSGKTSGIIPFIV------VQNALTLAISQGSLRRGSSAV 168
Query: 265 NIAIWVPDLFMKRVIKKSTWTLFSPY-DVPDLHNK--FGKEFEESYILYENQTKLGKIK- 320
+ +W P++ I++ T P ++H+ EF E+ + ++ L K
Sbjct: 169 YLPVWHPEIEEFLDIRRPTGG--DPNRKALNIHHGVLLSDEFMEA-VEHDKTWDLLSPKD 225
Query: 321 --LFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ--QHVGI-IHSSNLCTEITL 375
+ + A LW KIL+ ETG P+I F DA N P+ + +G+ + SNLCTEITL
Sbjct: 226 KCVISTVKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVKMSNLCTEITL 285
Query: 376 NTS-----KNEIGVCNLGSINLTLH-MKNGKLDPIKLKKTIRIAMRMLDNVI-DINYYA- 427
T K+ VC L S+NL + M G +P + I MR LDNV+ D A
Sbjct: 286 TTGEDHLKKSRTAVCCLSSLNLEYYDMWCG--NP----QFIEDVMRFLDNVLTDFVQKAP 339
Query: 428 --VKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTE 485
+++A+YS +R R +G+G+MGF L +P+ S A + + + A S +
Sbjct: 340 TELERARYSAMRERSIGIGVMGFHSFLQSKMVPFESFAATMWNKKIFSYLKSQADAVSRK 399
Query: 486 LAEEKG 491
LA EKG
Sbjct: 400 LALEKG 405
>UNIPROTKB|P0A5W8 [details] [associations]
symbol:nrdE "Ribonucleoside-diphosphate reductase subunit
alpha" species:1773 "Mycobacterium tuberculosis" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0051063 "CDP reductase
activity" evidence=IDA] [GO:0055114 "oxidation-reduction process"
evidence=IDA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005886 GO:GO:0005524
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842581 GO:GO:0009263
eggNOG:COG0209 KO:K00525 GO:GO:0005971 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:L34407 PIR:F70861 RefSeq:NP_217567.1
RefSeq:NP_337654.1 ProteinModelPortal:P0A5W8 SMR:P0A5W8
EnsemblBacteria:EBMYCT00000003419 EnsemblBacteria:EBMYCT00000070027
GeneID:888869 GeneID:923996 KEGG:mtc:MT3137 KEGG:mtu:Rv3051c
PATRIC:18128658 TubercuList:Rv3051c HOGENOM:HOG000246165
OMA:VSRIEIR ProtClustDB:PRK08188 GO:GO:0051063 InterPro:IPR026459
TIGRFAMs:TIGR04170 Uniprot:P0A5W8
Length = 725
Score = 480 (174.0 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 155/554 (27%), Positives = 261/554 (47%)
Query: 50 DNKLLNPKLAEFNLSLLSNALLPERDLQF-NYLGLKILYDRYFLH-IEGIRIEMPQFFFM 107
+ ++L+ F +LL A + +F +LG Y Y L +G R + +F
Sbjct: 84 EREVLDQYSRNFVKTLLDRAYA--KKFRFPTFLGAFKYYTSYTLKTFDGKRY-LERFEDR 140
Query: 108 RIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTI-RSQLSSCYLSTVPDDLY 166
+ + L+L + + ++ F +TPT NSG R + SC+L V D++
Sbjct: 141 VVMVALTLAAGDTALAELLVDEIIDG-RFQPATPTFLNSGKKQRGEPVSCFLLRVEDNME 199
Query: 167 GIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQG 226
I SI LSK GG+ T +R G+PIK +S GVIP +K++ D NQ
Sbjct: 200 SIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQL 259
Query: 227 GKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTL 286
G R+GA YL H DI F++ ++ D++ R +++ + +PD+ + + L
Sbjct: 260 GARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYL 319
Query: 287 FSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFK-KISALYLWRKILSMLFETGHPW 345
FSPYDV + +G F + + + + ++ K KI A ++ + + FE+G+P+
Sbjct: 320 FSPYDVERV---YGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPY 376
Query: 346 ITFKDACNIRSPQQHVGIIHSSNLCTEIT-LNTSK--NE------IGV---CNLGSINLT 393
I F+D N +P G I SNLC+EI ++T NE +G CNLGS+N+
Sbjct: 377 IMFEDTVNRANPID--GKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA 434
Query: 394 LHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKYSNLRHRPVGLGIMGFQDCL 452
M D +TI +A+R L V D + +V + N +GLG M L
Sbjct: 435 KTM-----DSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYL 489
Query: 453 HIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG-RYSSYDGSLWDQG-ILPQDS 510
+I Y S E I F + + Y+A AS +A E+G + ++ S + G + +
Sbjct: 490 ARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYT 549
Query: 511 LKLLE-KERGSKYL----KVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGV 565
++ E K + + L + + +W++L+ ++ G+ N N A+ PT +IS I
Sbjct: 550 DQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHS 609
Query: 566 SASIEPTYRNLHIK 579
++SI P + I+
Sbjct: 610 TSSIHPIVSKVEIR 623
Score = 89 (36.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 626 DDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKK-LDETYKLAWLRGL 684
D+L + Y A+EI II+ + + +DQ SL ++ + + + +++ AW +G+
Sbjct: 641 DNL-EYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGI 699
Query: 685 KTTYYLR 691
KT YY+R
Sbjct: 700 KTLYYIR 706
>TIGR_CMR|SPO_3194 [details] [associations]
symbol:SPO_3194 "ribonucleoside-diphosphate reductase,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260
GO:GO:0031419 KO:K00525 OMA:QMATFDI GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
HOGENOM:HOG000229278 RefSeq:YP_168397.1 ProteinModelPortal:Q5LNK9
GeneID:3192944 KEGG:sil:SPO3194 PATRIC:23379835
ProtClustDB:CLSK934086 Uniprot:Q5LNK9
Length = 760
Score = 250 (93.1 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 60/183 (32%), Positives = 93/183 (50%)
Query: 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSK 379
K++ + A LW KI+ ++ P + F D N + +V I ++N C E L
Sbjct: 218 KVYHTVEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGEQPLPP-- 275
Query: 380 NEIGVCNLGSINLTLHMKN-----GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYS 434
G C LGS+NL + N +LDP L+K + A+RM+DNV+D + + + +
Sbjct: 276 --YGACLLGSVNLARLVSNPFEDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAE 333
Query: 435 NLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYS 494
R +GLG+ G D L ++ + Y S EA K + + I AY AS ELA+EKG +
Sbjct: 334 AQNKRRIGLGVTGLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFP 393
Query: 495 SYD 497
+D
Sbjct: 394 LFD 396
Score = 246 (91.7 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 62/206 (30%), Positives = 107/206 (51%)
Query: 86 LYD-RY-FLHIEGIRIEMP-QFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPT 142
++D +Y F +G I+ + + RIA L+ E + ++ +FY L F ++ +
Sbjct: 12 IWDMKYRFKQADGTPIDQTVEDSWRRIARDLARVEQDPDRWEREFYTALEDFKYLPAGRI 71
Query: 143 LFNSGTIRS-QLSSCY-LSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIK 200
+GT R L +C+ + T+PD + GIFE +KE AL + GG+G D++ +R G+ +K
Sbjct: 72 TAGAGTARQVTLFNCFVMGTIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVK 131
Query: 201 GTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRR 260
G + G + F+ V + + + G R+GA+ A + H DIE+FI + D R
Sbjct: 132 GVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAKS----DPAR 187
Query: 261 THDMNIAIWVPDLFMKRVIKKSTWTL 286
N+++ V D FM+ V +W L
Sbjct: 188 LRMFNMSVLVTDAFMEAVKADGSWEL 213
Score = 87 (35.7 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 514 LEKERGS-------KYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIG-V 565
L KE+G+ KYL +++ + +R I+ G+RN+ +IAPT TIS G V
Sbjct: 385 LAKEKGAFPLFDAEKYLASGTMRAMD-EDVREAIRTHGIRNALLTSIAPTGTISLYAGNV 443
Query: 566 SASIEPTYRNLHIKSNLS--GEFTE 588
S+ IEP + + + L G TE
Sbjct: 444 SSGIEPVFAYAYTRKVLQKDGSRTE 468
Score = 59 (25.8 bits), Expect = 1.0e-39, Sum P(4) = 1.0e-39
Identities = 33/128 (25%), Positives = 50/128 (39%)
Query: 568 SIEPTYRNLHIKSNLSGEFTEINRYLV--KELKKKGLWDESMIAN--LKYFDGNLSQISR 623
SI PT N+S + Y K L+K G E + + ++ + + +
Sbjct: 429 SIAPTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQMWRDKFAD-AP 487
Query: 624 IPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNK-SGKKLDETYKLAWLR 682
+PD + A ++P + + QKWID S S I S + Y AW
Sbjct: 488 LPD----YFVNAQTLAPADHVRMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQAWDL 543
Query: 683 GLK--TTY 688
G K TTY
Sbjct: 544 GCKGCTTY 551
Score = 42 (19.8 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 675 TYKLAWLRGLKTTYY-LRSISANYAKKSNFEMGIDSVNLD 713
TYKL W Y + I N ++ FE+ I+S N++
Sbjct: 603 TYKLKWPDSEHAIYLTINDIIINGHRRP-FEVFINSKNME 641
Score = 38 (18.4 bits), Expect = 5.4e-16, Sum P(3) = 5.4e-16
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 625 PDDLRKIYATAFEISPNWIIEA 646
P+ L+K+ ATA + N +++A
Sbjct: 302 PEALQKLVATAVRMMDN-VVDA 322
>TIGR_CMR|DET_0244 [details] [associations]
symbol:DET_0244 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_180992.1
ProteinModelPortal:Q3Z9V7 STRING:Q3Z9V7 GeneID:3230414
KEGG:det:DET0244 PATRIC:21607559 OMA:SANFGIN ProtClustDB:CLSK741634
BioCyc:DETH243164:GJNF-244-MONOMER Uniprot:Q3Z9V7
Length = 585
Score = 209 (78.6 bits), Expect = 5.9e-40, Sum P(3) = 5.9e-40
Identities = 65/209 (31%), Positives = 109/209 (52%)
Query: 305 ESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGII 364
E Y L +T G++ +SA ++ +I +ETG P I F D N +P +G
Sbjct: 210 EDYELVNPRT--GRVS--GSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEF 265
Query: 365 HSSNLCTEITLNTSKNEIGVCNLGSINLT-LHMKNG---KLDPIKLKKTIRIAMRMLDNV 420
+++ C L ++ LG+INL+ + +K G ++D +L I A+R LD+V
Sbjct: 266 ITTDPCGGQPLLPYES----ATLGTINLSGMLLKEGNCCRVDYPRLGGLIAKAVRFLDDV 321
Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
+++N Y + + + R +GLG MGF + L + I Y S EA+ AD+ M + A
Sbjct: 322 LEVNRYPSAEVEKAARATRKIGLGFMGFAEMLIKLGIRYDSAEAVSAADELMAFVKEAAC 381
Query: 481 YASTELAEEKGRYSSYDGSLWDQ-GILPQ 508
A+ ELA E+G + ++ GS++ Q G P+
Sbjct: 382 QATEELALERGAFPAFAGSIYAQKGAKPR 410
Score = 199 (75.1 bits), Expect = 5.9e-40, Sum P(3) = 5.9e-40
Identities = 57/212 (26%), Positives = 104/212 (49%)
Query: 85 ILYDRYFLHI-EGIRIEMPQFFFMRIAMGLSLNES-----NREKC-AIKFYNLLSSFNFM 137
+L RY +G E + F R+A ++ E+ + C A +FY +++ F F+
Sbjct: 10 VLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYGMMTGFEFL 69
Query: 138 CSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGS 197
++PTL N+G LSSC++ V D + GI +++ E ++ +Y GG G + +R
Sbjct: 70 PNSPTLLNAGRELGLLSSCFVLPVADSVAGIAKAVGEAMVIHQYGGGTGFAFDAIRPEDD 129
Query: 198 PIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDD 257
P+K + + G + + V ++ + Q G R G A L H DI +FI + D+
Sbjct: 130 PVKSGHKVAGGPVRLVGVFSEAVNYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DE 185
Query: 258 RRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSP 289
+ + I I + D F+++V + + L +P
Sbjct: 186 GSHSANFGINIALTDDFIRKVRRGEDYELVNP 217
Score = 147 (56.8 bits), Expect = 5.9e-40, Sum P(3) = 5.9e-40
Identities = 41/148 (27%), Positives = 73/148 (49%)
Query: 546 RNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGE-FTEINRYLVKELKKKGLWD 604
RN+ C+ T T S I S I P Y + +++ L G+ +IN + +++G +
Sbjct: 411 RNATCLTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFS 470
Query: 605 ESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQ--SQSLNI 662
++I L + + IP+D R++ TA +I P W I + QK+ D SQ++N
Sbjct: 471 PALIEKLLTGESPCN-CPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVN- 528
Query: 663 YISNKSGKKLDETYKLAWLRGLK--TTY 688
+ ++ S + + + + A GLK T Y
Sbjct: 529 FPADASVEDIADLFLKAHELGLKGVTAY 556
Score = 43 (20.2 bits), Expect = 8.7e-24, Sum P(3) = 8.7e-24
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 25 GKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSL 65
G I I + F + + +G D +L+NP+ + SL
Sbjct: 186 GSHSANFGINIALTDDFIRKVRRGEDYELVNPRTGRVSGSL 226
>UNIPROTKB|Q0C1X7 [details] [associations]
symbol:HNE_1555 "Ribonucleoside-diphosphate reductase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 GO:GO:0006260 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0031419 GO:GO:0009265 eggNOG:COG0209 KO:K00525 OMA:QMATFDI
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02504 InterPro:IPR024434
Pfam:PF12637 RefSeq:YP_760266.1 STRING:Q0C1X7 GeneID:4287134
KEGG:hne:HNE_1555 PATRIC:32215933 HOGENOM:HOG000229278
ProtClustDB:CLSK2780972 BioCyc:HNEP228405:GI69-1588-MONOMER
Uniprot:Q0C1X7
Length = 731
Score = 244 (91.0 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 58/186 (31%), Positives = 103/186 (55%)
Query: 110 AMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRS-QLSSCY-LSTVPDDLYG 167
A+ + N +NR+ +F + L+ F F+ + L +GT R+ L +C+ + T+PD+L G
Sbjct: 38 AVAKAENPANRKVWRARFRDALTDFRFIPAGRILAGAGTARNVTLFNCFVMGTLPDNLPG 97
Query: 168 IFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG 227
IFE ++E A+ + GG+G D++ +R G+P+ G ++ G + F+ + + + G
Sbjct: 98 IFEHLREAAVTLQQGGGVGMDFSTIRPSGAPVMGVGAQASGPLSFMDTWDAMCRTIMSAG 157
Query: 228 KRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTL- 286
+R+GA+ L H DIE FI+ ++ D R + N+++ V D FM + WTL
Sbjct: 158 QRRGAMMGCLRIDHPDIEAFIDAKR----DGARFRNFNLSVLVTDEFMAALEAGRDWTLS 213
Query: 287 FS--PY 290
F+ PY
Sbjct: 214 FNGQPY 219
Score = 217 (81.4 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 322 FKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNE 381
++ + A LW +++ ++ P + F D N + + I +SN C E L
Sbjct: 219 YRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGEQMLPP---- 274
Query: 382 IGVCNLGSINLTLHMKN-----GKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNL 436
G C LGSINL + + K++ +L+ A+R LDNVIDI+ Y +++
Sbjct: 275 YGACLLGSINLARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLEQQGEEAR 334
Query: 437 RHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSY 496
R +GLG+ G D L Y S +A+ +++ M I AY AS LA EKG Y +
Sbjct: 335 AKRRLGLGVTGLADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAEKGPYPLF 394
Query: 497 DGSLWDQ-GILPQD-SLKLLEKERG 519
D ++ D+ +L D + L E G
Sbjct: 395 DKAILDRPNLLGLDPDTRALISEHG 419
Score = 65 (27.9 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 537 RNRIKKFGMRNSNCVAIAPTATISNII-GVSASIEPTY 573
R I + G+RN +IAPT T S + VS+ +EP +
Sbjct: 412 RALISEHGLRNGCLTSIAPTGTTSLLADNVSSGVEPVF 449
Score = 50 (22.7 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 670 KKLD-ETYKLAWLRGLKTTYY-LRSISANYAKKSNFEMGIDSVNLD 713
+KL+ TYKL W + Y + + + FE+ ++S N+D
Sbjct: 581 RKLEGATYKLKWPQSAHAVYVTINDADTGHGPRP-FEIFVNSKNMD 625
>TIGR_CMR|DET_0345 [details] [associations]
symbol:DET_0345 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH RefSeq:YP_181092.1 ProteinModelPortal:Q3Z9K7
STRING:Q3Z9K7 GeneID:3230364 KEGG:det:DET0345 PATRIC:21607759
ProtClustDB:PRK08665 BioCyc:DETH243164:GJNF-345-MONOMER
Uniprot:Q3Z9K7
Length = 761
Score = 295 (108.9 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 82/260 (31%), Positives = 145/260 (55%)
Query: 255 GDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVP-DLHNKFGKEFEES--YILYE 311
G RR + ++I PD+ MK + K + + +++ + +KF + ++ Y L
Sbjct: 177 GGTRRGANMAILSIDHPDI-MKFIHAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLLN 235
Query: 312 NQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCT 371
G++ +++A ++ KI+ M ++TG P I F D N +P +G I S+N C
Sbjct: 236 PHN--GEV--VSRLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCG 291
Query: 372 EITLNTSKNEIGVCNLGSINLT--LHMKNGK--LDPIKLKKTIRIAMRMLDNVIDINYYA 427
E L ++ CNLGSINL+ + + G+ +D KL + ++ A+R LDNVID+N +
Sbjct: 292 EQPLLPYES----CNLGSINLSRMVTVSGGQAVVDYKKLSRVVKSAVRFLDNVIDVNKFP 347
Query: 428 VKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELA 487
+ + + + R +GLG+MGF D L + IPY+S+ +IK A++ M + A+ S+ELA
Sbjct: 348 LPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSSELA 407
Query: 488 EEKGRYSSYDGSLWDQGILP 507
E+G + +Y GS++++ P
Sbjct: 408 VERGVFPAYRGSIYEKSGRP 427
Score = 236 (88.1 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 59/204 (28%), Positives = 106/204 (51%)
Query: 95 EGIRIEMPQFFFMRIAMGLSLNES-NREKCAIK-----FYNLLSSFNFMCSTPTLFNSGT 148
+G E + F R+A +++ E K ++ FYN+++ F+ ++PTL N+G
Sbjct: 40 QGKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNIMTRLEFLPNSPTLMNAGR 99
Query: 149 IRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQG 208
QLS+C++ V D + IF+++K A++ K GG G ++++R + T G + G
Sbjct: 100 ELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASG 159
Query: 209 VIPFLKVVNDVAV-AVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIA 267
+ F++ DVA + QGG R+GA A L H DI +FI + G + N++
Sbjct: 160 PVSFMRAF-DVATDVIKQGGTRRGANMAILSIDHPDIMKFIHAKDKAGV----LTNFNLS 214
Query: 268 IWVPDLFMKRVIKKSTWTLFSPYD 291
+ + D FM+ V + L +P++
Sbjct: 215 VAITDKFMQAVKDGVDYDLLNPHN 238
Score = 185 (70.2 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 68/263 (25%), Positives = 122/263 (46%)
Query: 445 IMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYS----SYDGSL 500
+ G Q + K+ K A++F D ++ + + E+ ++ + + L
Sbjct: 314 VSGGQAVVDYKKLSRVVKSAVRFLDNVID-VNKFPLPQIEEMTKKSRKIGLGVMGFADML 372
Query: 501 WDQGIL--PQDSLKLLEK------ERGSKYLKVNMSESLNWKKLRNRI-KKFG--MRNSN 549
+ GI ++S+KL E+ E K+ E + R I +K G MRN++
Sbjct: 373 LELGIPYNSENSIKLAEEIMCFVNEEAHKFSSELAVERGVFPAYRGSIYEKSGRPMRNAS 432
Query: 550 CVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSG-EFTEINRYLVKELKKKGLWDESMI 608
C IAPT T+S I G S+ IEP + ++ L G + E+N Y + K+ G + E +I
Sbjct: 433 CTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELI 492
Query: 609 ANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKS 668
+L +G + +P + ++++ TA +I P W + + QK D + S + S ++
Sbjct: 493 KSLA--EGAHLDEADVPAEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSREA 550
Query: 669 GK-KLDETYKLAWLRGLK-TTYY 689
+ + E YK+A LK T Y
Sbjct: 551 VEGDVAEVYKMAHDSNLKGITIY 573
Score = 43 (20.2 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 28 IKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
+ ++ + + F + + G+D LLNP E
Sbjct: 208 LTNFNLSVAITDKFMQAVKDGVDYDLLNPHNGE 240
>UNIPROTKB|H0YCY7 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 Ensembl:ENST00000528442 Uniprot:H0YCY7
Length = 130
Score = 262 (97.3 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 55/114 (48%), Positives = 80/114 (70%)
Query: 128 YNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFESIKENALLSKYAGGLG 186
YNLLS F ++PTLFN+GT R QLSSC+L ++ DD + GI++++K+ AL+SK AGG+G
Sbjct: 3 YNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIG 62
Query: 187 NDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
+ +R+ GS I GTNG S G++P L+V N+ A V+QGG ++ I L +W
Sbjct: 63 VAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRIMIYLPLASW 116
>UNIPROTKB|I3LEK6 [details] [associations]
symbol:I3LEK6 "Ribonucleoside-diphosphate reductase"
species:9823 "Sus scrofa" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
GeneTree:ENSGT00390000001372 EMBL:CU466349
Ensembl:ENSSSCT00000032470 Uniprot:I3LEK6
Length = 135
Score = 248 (92.4 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 53/115 (46%), Positives = 81/115 (70%)
Query: 107 MRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-L 165
MR+++G+ + + AI+ YNLLS F ++PTLFN+GT R QLSSC+L ++ DD +
Sbjct: 3 MRVSVGIHKEDID---AAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSI 59
Query: 166 YGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVA 220
GI++++K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A
Sbjct: 60 EGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTA 114
>UNIPROTKB|Q5LRJ1 [details] [associations]
symbol:nrdJ "Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 162 (62.1 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 78/340 (22%), Positives = 125/340 (36%)
Query: 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSK 379
K+ K + A LW K+ + P I F D N G I SN C+E
Sbjct: 418 KVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSEYMFLDDT 477
Query: 380 NEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHR 439
CNL S+NL +K+G+ R+ L+ + + + K+ + R
Sbjct: 478 ----ACNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDFR 533
Query: 440 PVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGS 499
+GLG L M Y S E ++ AY S E+A E G ++ Y+ +
Sbjct: 534 TLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIAGELGPFAGYERN 593
Query: 500 LWDQ-GILPQDSLKLLEKERGSKYLKVN---MSES------------LNWKKLRNRIKKF 543
+ ++ K G + L V + S +W + + +K
Sbjct: 594 AANMLRVIRNHRTAAYGKANGYEQLSVKPVPLDHSNCPDPRLVELAMASWDEALSLGEKN 653
Query: 544 GMRNSNCVAIAPTATISNIIGVSAS-IEPTYRNLHIKSNLSGEFTEI-NRYLVKELKKKG 601
G RN+ IAPT TI ++ + IEP + + K G + +I NR + L+ G
Sbjct: 654 GYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALENLG 713
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
+ + Y G+ I P + T PN
Sbjct: 714 YSSAQIEEIVSYAVGH-GTIGNAPG-INHTSLTGHGFGPN 751
Score = 147 (56.8 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 152 QLSSCYLSTVPDDLY---GIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQG 208
Q +C++ +V DDL GI + A L KY G G +++ +R+ G + G G+S G
Sbjct: 187 QPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSG-GGKSSG 245
Query: 209 VIPFLKVVNDVAVAVNQGGK-RKGAICAYLETWHMDIEEFIE 249
++ FLK+ + A A+ GG R+ A ++ H DIE+FI+
Sbjct: 246 LMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIQ 287
Score = 40 (19.1 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 265 NIAIWVPDLFMKRVIKKSTWTLFS 288
N +I V + F+K V K + W L +
Sbjct: 390 NNSIRVTNAFLKAVEKDADWELIN 413
Score = 39 (18.8 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLR 691
S+++N+ +N + + + Y+L+W G+K R
Sbjct: 871 SKTINMP-NNATIEDCQKAYELSWSLGVKANALYR 904
>TIGR_CMR|SPO_2136 [details] [associations]
symbol:SPO_2136 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 162 (62.1 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 78/340 (22%), Positives = 125/340 (36%)
Query: 320 KLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSK 379
K+ K + A LW K+ + P I F D N G I SN C+E
Sbjct: 418 KVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSEYMFLDDT 477
Query: 380 NEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHR 439
CNL S+NL +K+G+ R+ L+ + + + K+ + R
Sbjct: 478 ----ACNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDFR 533
Query: 440 PVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGS 499
+GLG L M Y S E ++ AY S E+A E G ++ Y+ +
Sbjct: 534 TLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIAGELGPFAGYERN 593
Query: 500 LWDQ-GILPQDSLKLLEKERGSKYLKVN---MSES------------LNWKKLRNRIKKF 543
+ ++ K G + L V + S +W + + +K
Sbjct: 594 AANMLRVIRNHRTAAYGKANGYEQLSVKPVPLDHSNCPDPRLVELAMASWDEALSLGEKN 653
Query: 544 GMRNSNCVAIAPTATISNIIGVSAS-IEPTYRNLHIKSNLSGEFTEI-NRYLVKELKKKG 601
G RN+ IAPT TI ++ + IEP + + K G + +I NR + L+ G
Sbjct: 654 GYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALENLG 713
Query: 602 LWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPN 641
+ + Y G+ I P + T PN
Sbjct: 714 YSSAQIEEIVSYAVGH-GTIGNAPG-INHTSLTGHGFGPN 751
Score = 147 (56.8 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 152 QLSSCYLSTVPDDLY---GIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQG 208
Q +C++ +V DDL GI + A L KY G G +++ +R+ G + G G+S G
Sbjct: 187 QPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSG-GGKSSG 245
Query: 209 VIPFLKVVNDVAVAVNQGGK-RKGAICAYLETWHMDIEEFIE 249
++ FLK+ + A A+ GG R+ A ++ H DIE+FI+
Sbjct: 246 LMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIQ 287
Score = 40 (19.1 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 265 NIAIWVPDLFMKRVIKKSTWTLFS 288
N +I V + F+K V K + W L +
Sbjct: 390 NNSIRVTNAFLKAVEKDADWELIN 413
Score = 39 (18.8 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 657 SQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLR 691
S+++N+ +N + + + Y+L+W G+K R
Sbjct: 871 SKTINMP-NNATIEDCQKAYELSWSLGVKANALYR 904
>UNIPROTKB|E9PP77 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
Pfam:PF02867 GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
HGNC:HGNC:10451 ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI00976088
ProteinModelPortal:E9PP77 SMR:E9PP77 Ensembl:ENST00000533495
ArrayExpress:E9PP77 Bgee:E9PP77 Uniprot:E9PP77
Length = 75
Score = 160 (61.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 31/67 (46%), Positives = 48/67 (71%)
Query: 163 DDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVA 222
D + GI++++K+ AL+SK AGG+G + +R+ GS I GTNG S G++P L+V N+ A
Sbjct: 4 DSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARY 63
Query: 223 VNQGGKR 229
V+QGG +
Sbjct: 64 VDQGGNK 70
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 749 749 0.00089 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 630 (67 KB)
Total size of DFA: 405 KB (2195 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 65.73u 0.09s 65.82t Elapsed: 00:00:16
Total cpu time: 65.77u 0.09s 65.86t Elapsed: 00:00:18
Start: Thu Aug 15 11:39:49 2013 End: Thu Aug 15 11:40:07 2013