RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8865
(749 letters)
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 525
Score = 396 bits (1018), Expect = e-131
Identities = 150/564 (26%), Positives = 236/564 (41%), Gaps = 52/564 (9%)
Query: 154 SSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFL 213
SSC L D L I + G+G + ++R+LGSPI+G G IPF
Sbjct: 2 SSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFY 61
Query: 214 KVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDL 273
K + +QGG R GA + WH+++E + L+ N G + R M+ + + L
Sbjct: 62 KHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKL 121
Query: 274 FMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRK 333
R++K TLFSP DVP L++ F + EE LY K I+ +++ A+ L+
Sbjct: 122 MYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIR-KQRVKAVELFSL 180
Query: 334 ILSMLFETGHPWITFKDACNIRSPQ-QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL 392
++ TG +I D CN SP + + SNLC EI L T G I L
Sbjct: 181 MMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIAL 240
Query: 393 TLHMK---NGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQ 449
+ +L + +A+R LD ++D Y + AK + R +G+G++ F
Sbjct: 241 CTLSAFNLGAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 300
Query: 450 DCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
L YS A ++ E I YY AS ELA+E+G ++ + + +GILP D
Sbjct: 301 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 360
Query: 510 SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASI 569
+ K ++ L + LR IK G+RNS A+ P+ T S I + I
Sbjct: 361 TYKKDLDTIANEPLHYDWEA------LRESIKTHGLRNSTLSALMPSETSSQISNATNGI 414
Query: 570 EPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLR 629
EP + IK++ G ++ + L
Sbjct: 415 EPPRGYVSIKASKDGILRQVVPD--------------------------------YEHLH 442
Query: 630 KIYATAFEI-SPNWIIEAGSVRQKWIDQSQSLNIYI-------SNKSGKKLDETYKLAWL 681
Y +E+ + ++ + QK+IDQS S N ++L + A+
Sbjct: 443 DAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYK 502
Query: 682 RGLKTTYYLRSISANYAKKSNFEM 705
G+KT YY + SNF++
Sbjct: 503 FGVKTLYYQNTRDDIDD-LSNFQL 525
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase,
C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 525
Score = 358 bits (918), Expect = e-116
Identities = 133/560 (23%), Positives = 243/560 (43%), Gaps = 58/560 (10%)
Query: 153 LSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPF 212
L SC+L + D++ I ++ LSK GG+ + +R G+PIK +S GVIP
Sbjct: 1 LVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPV 60
Query: 213 LKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPD 272
+K++ D NQ G R+GA YL H DI F++ ++ D++ R +++ + +PD
Sbjct: 61 MKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 120
Query: 273 LFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWR 332
+ + + + LFSPYD+ + K + S E K I+A ++
Sbjct: 121 ITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRK--TYINARDFFQ 178
Query: 333 KILSMLFETGHPWITFKDACNIR----------SPQQHVGIIHSSNLCTEITLNTSKNEI 382
+ + FE+G+P+I F+D N + + ++S++ + T
Sbjct: 179 TLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHD 238
Query: 383 GVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYY-AVKKAKYSNLRHRPV 441
CNLGS+N+ M + + + A+R L V D+++ +V N +
Sbjct: 239 ISCNLGSLNIAHVMDSPDIGRT-----VETAIRGLTAVSDMSHIRSVPSIAAGNAASHAI 293
Query: 442 GLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKG-RYSSYDGSL 500
GLG M L I Y S EA+ F + I ++A + S LA E+G ++ + S
Sbjct: 294 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSR 353
Query: 501 WDQGILPQDSLKLLEKERGSKYLK------VNMSESLNWKKLRNRIKKFGMRNSNCVAIA 554
+ G L+ + + +K + + W KLR+ + ++G+ N N A+
Sbjct: 354 YASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVP 413
Query: 555 PTATISNIIGVSASIEPTYRNLHI-KSNLSGEFTEINRYLVKELKKKGLWDESMIANLKY 613
PT +IS I ++SI P + I K +G ++
Sbjct: 414 PTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFM-------------------- 453
Query: 614 FDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNK-SGKKL 672
++ +Y A++I P II+ + + +DQ SL ++ + + + +
Sbjct: 454 -----------TNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 502
Query: 673 DETYKLAWLRGLKTTYYLRS 692
++ AW +G+K+ YY+R
Sbjct: 503 NKAQIYAWRKGIKSLYYIRL 522
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 169 bits (428), Expect = 9e-45
Identities = 85/594 (14%), Positives = 171/594 (28%), Gaps = 97/594 (16%)
Query: 161 VPDDLYGIFESIKE------NALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLK 214
+PD G + L D + +R G+ I G G + G +P +
Sbjct: 217 LPDTREGWVLANALLIDLHFAQTNPDRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLIS 276
Query: 215 VVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLF 274
++ DV +N + + ++ +A+ D
Sbjct: 277 MLLDVNEVLNNKAGGRLTAVDAADICNLIG--------KAVVAGNVRRSAELALGSNDDQ 328
Query: 275 MKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKI 334
+K+ L + F + + G+ + + R
Sbjct: 329 DFISMKQDQEKLMHHRWASNNSVAVDSAFSGYQPIAAGIRENGEPGIVNLDLSKNYGR-- 386
Query: 335 LSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTL 394
G + +N C EI+L + CNL + +
Sbjct: 387 -----------------IVDGYQAGIDGDVEGTNPCGEISLANGE----PCNLFEVFPLI 425
Query: 395 HMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHI 454
+ G R A R+ + Y + ++ ++R +G+ + G QD L
Sbjct: 426 AEEQGWDLQEVFALAARYAKRVTFS-----PYDWEISREIIQKNRRIGISMSGIQDWLLT 480
Query: 455 MKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLL 514
+ + A +K K++
Sbjct: 481 RLGNRVVTGF-------KDDFDPETHEAIKVPVYDKRAI------------------KMV 515
Query: 515 EKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNS-NCVAIAPTATISNIIGVSASIEPTY 573
++ + K ++ K G S + P+ T++ + G S + Y
Sbjct: 516 DQLYKA-----------VVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHY 564
Query: 574 RNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYA 633
I+ + + L+ LK G E+ I + + +A
Sbjct: 565 GAYLIQRIRFQD----SDPLLPALKACGYRTEADIY--TENTTCVEFPIKAVGADNPNFA 618
Query: 634 TAFEISPNWIIEAGSVRQK-WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRS 692
+A +S + Q W D + S I + G ++ E+ + K+T L
Sbjct: 619 SAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQV-ESLLRQYRFITKSTSLLPY 677
Query: 693 ISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECE 746
+ +++ E I + Y K QEI N + + + +DV + E
Sbjct: 678 FGGSL-QQAPKE---------PIDKETYEKRSQEITGNVEEVFSQLNSDVKDLE 721
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 212
Score = 107 bits (269), Expect = 3e-27
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Query: 2 EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
P Y + ARL ++ ++K+ +G+ P ++ K + G + L E
Sbjct: 63 RDAPDYQYLAARLAIFHLRKKAYGQ-----FEPPALYDHVVKMVEMGKYDNHLLEDYTEE 117
Query: 62 NLSLLSNALLPERDLQFNYLGLKILYDRYFL--HIEGIRIEMPQFFFMRIAMGLSLNE-- 117
+ + +RD+ F+Y +K L +Y + + G E QF ++ +A L N
Sbjct: 118 EFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPR 177
Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQ 152
R + +FY+ +S+F TP + T Q
Sbjct: 178 ETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQ 212
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase,
N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 162
Score = 88.4 bits (219), Expect = 5e-21
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 5/116 (4%)
Query: 37 YKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHI-- 94
E + +G + + + + L +LG Y Y L
Sbjct: 47 QHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFD 106
Query: 95 EGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIR 150
+E + +A+ L+ + E A + + + S F +TPT N G +
Sbjct: 107 GKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQ 159
>d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 30.7 bits (69), Expect = 0.17
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 566 SASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIP 625
S S+E T+ ++ E+ L ++L+K+ L ++ LK + + +
Sbjct: 5 SMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTV 64
Query: 626 ----DDLRKIYATAFEI 638
+I+A A E+
Sbjct: 65 SSVVSTAEEIFAIAKEL 81
>d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo
sapiens) [TaxId: 9606]}
Length = 115
Score = 29.3 bits (65), Expect = 0.57
Identities = 6/50 (12%), Positives = 20/50 (40%)
Query: 566 SASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFD 615
S S E +++ + + E+ L+ + + G ++ ++ +
Sbjct: 2 SFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRKPHTVRLIIRRYS 51
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 27.6 bits (61), Expect = 7.0
Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 19/143 (13%)
Query: 593 LVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQK 652
LV++ K +E ++ D ++ P + + + ++ EA
Sbjct: 67 LVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEA------ 120
Query: 653 WIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNL 712
+ + K+ L Y A +E G+ + ++
Sbjct: 121 --KAKDDFSKFEPWLD--------KIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDV 170
Query: 713 DEI---SIKGYNKNLQEIKNNKK 732
+++ K L +I K
Sbjct: 171 EKMFEVLEKKLKPLLDKILEEGK 193
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus
subtilis [TaxId: 1423]}
Length = 270
Score = 26.8 bits (59), Expect = 8.1
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 280 KKSTWTLFSPYDVPDLH-NKFGKEFEESYILYENQTKLGKIKLFK 323
K W + + + + G+ FE + + + +LF
Sbjct: 206 GKRVWKEYKELEFREELFQEVGQAFEAEHNMKVGKVGSANCRLFS 250
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 26.6 bits (58), Expect = 9.8
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 226 GGKRKGAICAYLETWH--MDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKST 283
G A + +++E+ +L + + +++
Sbjct: 129 GSGSVYAYGVMDRGYSYDLEVEQAYDLARRA-----IYQATYRDAYSGGAVNLYHVREDG 183
Query: 284 WTLFSPYDVPDLHNKF 299
W S +V DLH K+
Sbjct: 184 WIRVSSDNVADLHEKY 199
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,872,739
Number of extensions: 142025
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 16
Length of query: 749
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 657
Effective length of database: 1,144,436
Effective search space: 751894452
Effective search space used: 751894452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)