Query psy8866
Match_columns 278
No_of_seqs 179 out of 1516
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:23:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 1.2E-93 4E-98 679.5 31.4 270 1-270 95-364 (365)
2 2ihr_1 Peptide chain release f 100.0 1.8E-92 6.2E-97 670.8 29.9 272 3-274 85-356 (365)
3 1zbt_A RF-1, peptide chain rel 100.0 3.6E-90 1.2E-94 655.8 30.6 272 1-275 88-366 (371)
4 3d5a_X RF1, peptide chain rele 100.0 2.3E-90 7.9E-95 654.2 29.0 274 1-275 70-348 (354)
5 2b3t_B RF-1, peptide chain rel 100.0 6.5E-90 2.2E-94 652.4 18.9 272 1-275 74-353 (360)
6 1rq0_A RF-1, peptide chain rel 100.0 3.7E-88 1.3E-92 636.3 26.3 266 6-275 59-329 (342)
7 2rsm_A Probable peptide chain 100.0 6.3E-38 2.2E-42 253.2 8.6 99 105-206 11-109 (115)
8 1j26_A Immature colon carcinom 99.9 2.2E-26 7.5E-31 186.3 10.2 72 134-205 11-107 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 2.6E-26 9E-31 184.7 8.7 69 137-205 7-99 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 2.7E-26 9.4E-31 192.3 3.9 103 137-246 7-135 (140)
11 2ctf_A Vigilin; K homology typ 43.7 26 0.00089 26.7 4.2 47 154-204 43-93 (102)
12 2axy_A Poly(RC)-binding protei 40.2 14 0.00048 26.2 2.0 46 154-202 21-71 (73)
13 2ctl_A Vigilin; K homology typ 36.7 31 0.0011 25.9 3.6 48 154-204 33-88 (97)
14 1go4_E MAD1 (mitotic arrest de 32.2 1.7E+02 0.0059 22.5 8.9 62 3-65 22-87 (100)
15 2ctk_A Vigilin; K homology typ 31.6 67 0.0023 24.3 4.8 50 154-206 33-87 (104)
16 1ec6_A RNA-binding protein NOV 30.6 65 0.0022 23.2 4.4 49 154-205 19-77 (87)
17 1vig_A Vigilin; RNA-binding pr 27.8 41 0.0014 23.6 2.8 43 154-199 21-68 (71)
18 2yrv_A AT-rich interactive dom 25.1 85 0.0029 25.0 4.4 45 104-153 13-57 (117)
19 2ctm_A Vigilin; K homology typ 24.9 68 0.0023 23.9 3.7 47 154-203 33-85 (95)
20 2ko1_A CTR148A, GTP pyrophosph 24.1 1.7E+02 0.006 19.9 7.1 56 60-117 24-85 (88)
21 3krm_A Insulin-like growth fac 24.1 30 0.001 27.7 1.7 50 154-206 101-159 (163)
22 2p2r_A Poly(RC)-binding protei 23.4 42 0.0014 23.6 2.1 46 154-202 21-73 (76)
23 2cte_A Vigilin; K homology typ 21.9 55 0.0019 24.2 2.6 46 154-203 33-84 (94)
24 1dtj_A RNA-binding neurooncolo 21.6 44 0.0015 23.3 1.9 45 154-201 19-73 (76)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=1.2e-93 Score=679.47 Aligned_cols=270 Identities=61% Similarity=1.028 Sum_probs=263.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy8866 1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT 80 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~ 80 (278)
|.++|.+++.++++.++.++++.||+||+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+++.+
T Consensus 95 ~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~ 174 (365)
T 1gqe_A 95 TFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVA 174 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy8866 81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI 160 (278)
Q Consensus 81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V 160 (278)
||++|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|++++.+++.|+++||+++|+||||||||||
T Consensus 175 G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~V 254 (365)
T 1gqe_A 175 GIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHV 254 (365)
T ss_dssp SEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCST
T ss_pred ceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998778999999999999999999999999
Q ss_pred cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCCCccc
Q psy8866 161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK 240 (278)
Q Consensus 161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~rVk 240 (278)
|||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|++++.+++.++.++.+..+.+++||++||||||+|+|||
T Consensus 255 Nkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRtY~f~~~rVk 334 (365)
T 1gqe_A 255 NRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK 334 (365)
T ss_dssp TSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEEEEEEGGGTEEE
T ss_pred cCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCeEeEECCCCeee
Confidence 99999999999999999999999999999999999999999999999988888888877889999999999999999999
Q ss_pred cccccccccCcccccCCCcHHHHHHHHHhh
Q psy8866 241 DLRTNLETKNIKDILDGDLDNFIIASLKQH 270 (278)
Q Consensus 241 D~R~~~~~~~~~~vl~G~ld~~i~~~~~~~ 270 (278)
|||||++++|+++||+|+||+||++++.|.
T Consensus 335 DhRt~~~~~~l~~vldGdld~~I~a~l~~~ 364 (365)
T 1gqe_A 335 DLRTGVETRNTQAVLDGSLDQFIEASLKAG 364 (365)
T ss_dssp ETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred ccccCceECCHHHHhCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999874
No 2
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=1.8e-92 Score=670.80 Aligned_cols=272 Identities=45% Similarity=0.757 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcCce
Q psy8866 3 KEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGI 82 (278)
Q Consensus 3 ~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~g~ 82 (278)
+|+.+++.++++.++.++++.||++|+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+++.+||
T Consensus 85 ~~a~~e~~~l~~~~~~le~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ 164 (365)
T 2ihr_1 85 EALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGI 164 (365)
T ss_dssp GGTGGGTHHHHHHHHHHHHHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCe
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccccc
Q psy8866 83 KTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINK 162 (278)
Q Consensus 83 ~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNk 162 (278)
++|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|++++.+++.|+++||+++|+||||||||||||
T Consensus 165 ks~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNk 244 (365)
T 2ihr_1 165 DYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNT 244 (365)
T ss_dssp EEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGG
T ss_pred EEEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCceecc
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred cCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCCCccccc
Q psy8866 163 TDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDL 242 (278)
Q Consensus 163 ~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~rVkD~ 242 (278)
|+|+|||+|+||||+|+|+++|||++||+.|+++|+++|++.+.+++.++.+..|..+.+++||++||||||+|++||||
T Consensus 245 t~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRtYnf~~~rVtDh 324 (365)
T 2ihr_1 245 TDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRSYVLDKNYVKDH 324 (365)
T ss_dssp SCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCSCCCSCSEEEEGGGTEEEET
T ss_pred cceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCeeeEECCCccchhc
Confidence 99999999999999999999999999999999999999999999999988888887889999999999999999999999
Q ss_pred cccccccCcccccCCCcHHHHHHHHHhhhhcc
Q psy8866 243 RTNLETKNIKDILDGDLDNFIIASLKQHLLNK 274 (278)
Q Consensus 243 R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~ 274 (278)
|||++++|+++||+|+||+||++++.+...+.
T Consensus 325 Rtg~~~~~l~~VldGdld~~I~a~l~~~~~~~ 356 (365)
T 2ihr_1 325 RTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 356 (365)
T ss_dssp TTCCEESCHHHHTTTCCHHHHHHHHHHHHTTC
T ss_pred ccCceeCChHHHhCCcHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999986543
No 3
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=3.6e-90 Score=655.76 Aligned_cols=272 Identities=33% Similarity=0.540 Sum_probs=245.3
Q ss_pred ChhHHHHHHHHHHHHHHHHH--HhhcC--CCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecC
Q psy8866 1 MLKEIEDNTNKLNNKIKEIE--FHQFF--NDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSN 76 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~--~~~ll--~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~ 76 (278)
|.+||.+++.+++++++.++ ++.|| ++|+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+
T Consensus 88 ~~~~a~~e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~ 167 (371)
T 1zbt_A 88 LEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASA 167 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 56789999999999999998 56676 899999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCC
Q psy8866 77 GEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAG 156 (278)
Q Consensus 77 ~~~~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpG 156 (278)
++.+||++|++.|+|++||++|++|+|||||||||||++++|+|||||+|+|+|++++ +++.|+++||+++|+||||||
T Consensus 168 ~~~gG~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~e-v~i~I~~~dl~i~~~RssGpG 246 (371)
T 1zbt_A 168 NGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEE-VEYEIDPKDLRVDIYHASGAG 246 (371)
T ss_dssp CSSSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCG-GGSCCCGGGEEEEEECC----
T ss_pred CCCCCceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccc-cccccCcCcEEEEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999975 789999999999999999999
Q ss_pred CccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC---CceeeEEe
Q psy8866 157 GQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKW---GYQIRSYV 233 (278)
Q Consensus 157 GQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~---g~~iRtY~ 233 (278)
|||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|++++.+++.++.+..+ +.+++| |++|||||
T Consensus 247 GQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r--~~~ig~g~Rse~IRtYn 324 (371)
T 1zbt_A 247 GQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAER--KSTVGTGDRSERIRTYN 324 (371)
T ss_dssp -----CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------CCSCSCTTSEEEEEE
T ss_pred CCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccccccCCCeeeEE
Confidence 9999999999999999999999999999999999999999999999999888777766554 455555 45899999
Q ss_pred cCCCccccccccccccCcccccCCCcHHHHHHHHHhhhhccc
Q psy8866 234 LDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKI 275 (278)
Q Consensus 234 ~~~~rVkD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~~ 275 (278)
|+|+||||||||++++|+++||+|+||+||++++.+..+..+
T Consensus 325 f~q~rVtDhRtg~~~~~l~~VldGdLd~~I~a~l~~~~~~~l 366 (371)
T 1zbt_A 325 FPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKL 366 (371)
T ss_dssp TTTTEEEETTTTEEESCHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEeeecccCCeECChHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876544
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=2.3e-90 Score=654.19 Aligned_cols=274 Identities=32% Similarity=0.551 Sum_probs=256.1
Q ss_pred ChhHHHHHHHHHHHHHHHHH--HhhcC--CCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecC
Q psy8866 1 MLKEIEDNTNKLNNKIKEIE--FHQFF--NDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSN 76 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~--~~~ll--~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~ 76 (278)
|.+||.+++.++++.++.++ ++.|| ++|+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+
T Consensus 70 ~~~~a~~e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~ 149 (354)
T 3d5a_X 70 LKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHP 149 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 56899999999999999998 66655 899999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCC
Q psy8866 77 GEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAG 156 (278)
Q Consensus 77 ~~~~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpG 156 (278)
++.+||++|++.|+|++||++|++|+|||||||||||++++|+|||||+|+|+|++++ +++.|+++||+++|+||||||
T Consensus 150 ~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~-~~i~i~~~dl~i~~~RssG~G 228 (354)
T 3d5a_X 150 TDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE-EDFALNMDEIRIDVMRASGPG 228 (354)
T ss_dssp CTTSSEEEEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCC-CCCCCCGGGEEEEEECCCSCC
T ss_pred CCCCccEEEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcc-cccccCccceEEEeecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999975 789999999999999999999
Q ss_pred CccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCCCCceeeEEecC
Q psy8866 157 GQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLED-TKKDIKWGYQIRSYVLD 235 (278)
Q Consensus 157 GQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~-~~~~~~~g~~iRtY~~~ 235 (278)
|||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|++++.+++.++.+..+. ......||++||||||+
T Consensus 229 GQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~ 308 (354)
T 3d5a_X 229 GQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFP 308 (354)
T ss_dssp HHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETT
T ss_pred CcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECC
Confidence 99999999999999999999999999999999999999999999999998887776655542 22334466789999999
Q ss_pred CCccccccccccccCcccccCCCcHHHHHHHHHhhhhccc
Q psy8866 236 KSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKI 275 (278)
Q Consensus 236 ~~rVkD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~~ 275 (278)
|++|||||||++++|+++||+|+||+||++++.+..+..+
T Consensus 309 q~rVtDhR~~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l 348 (354)
T 3d5a_X 309 QSRVTDHRIGFTTHDLEGVLSGHLTPILEALKRADQERQL 348 (354)
T ss_dssp TTEEEETTTTEEECCHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeeeecccCceeCChHHhhCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776543
No 5
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=6.5e-90 Score=652.36 Aligned_cols=272 Identities=38% Similarity=0.621 Sum_probs=230.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHh----hcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecC
Q psy8866 1 MLKEIEDNTNKLNNKIKEIEFH----QFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSN 76 (278)
Q Consensus 1 m~~e~~~~~~~~~~~l~~~~~~----~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~ 76 (278)
|.+||.+++..+++.++.++.+ .|+++|+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+
T Consensus 74 ~~~~a~~e~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~ 153 (360)
T 2b3t_B 74 MREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASE 153 (360)
T ss_dssp ---------------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 6789999999999999999976 577999999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCcccc-CcCCCCCeeEEEeeecCC
Q psy8866 77 GEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLIN-ININPADLRIDTYRASGA 155 (278)
Q Consensus 77 ~~~~g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~-~~i~~~dl~~~~~RssGp 155 (278)
++.+||++|++.|+|++||++|++|+|||||||||||++++|+|||||+|+|+|++++ ++ +.|+++||+++|+|||||
T Consensus 154 ~~~gG~k~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~-~e~i~i~~~dl~i~~~RssG~ 232 (360)
T 2b3t_B 154 GEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPD-AELPDVNPADLRIDTFRSSGA 232 (360)
T ss_dssp CTTSSEEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCT-TTCCCCCSSSEEEEECCSSCC
T ss_pred CCCCCceEEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCccc-ccccccChhheEEeeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999975 56 889999999999999999
Q ss_pred CCccccccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC---CCceeeEE
Q psy8866 156 GGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIK---WGYQIRSY 232 (278)
Q Consensus 156 GGQ~VNk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~---~g~~iRtY 232 (278)
||||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|+++..+++.++.+..+ +.+++ ||++||||
T Consensus 233 GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r--~~~i~~g~rse~IRtY 310 (360)
T 2b3t_B 233 GGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTR--RNLLGSGDRSDRNRTY 310 (360)
T ss_dssp CTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------C--CC-------CCEEEEE
T ss_pred CCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccccccCCeeeE
Confidence 99999999999999999999999999999999999999999999999988776655554443 45555 45689999
Q ss_pred ecCCCccccccccccccCcccccCCCcHHHHHHHHHhhhhccc
Q psy8866 233 VLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKI 275 (278)
Q Consensus 233 ~~~~~rVkD~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~~ 275 (278)
||+|++|||||||++++|+++||+|+||+||++++.+..+..+
T Consensus 311 nf~~~rVtDhRt~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l 353 (360)
T 2b3t_B 311 NFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQL 353 (360)
T ss_dssp ETTTTEEEEGGGTEEESCHHHHHHTCTHHHHHHHHHHHHHHHC
T ss_pred ECCCCeeeecccCcEECCHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887655
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=3.7e-88 Score=636.26 Aligned_cols=266 Identities=41% Similarity=0.676 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHHHH--HhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcCcee
Q psy8866 6 EDNTNKLNNKIKEIE--FHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIK 83 (278)
Q Consensus 6 ~~~~~~~~~~l~~~~--~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~g~~ 83 (278)
.+++..+++.++.++ ++.||. |+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+++.+||+
T Consensus 59 ~~e~~~l~~~l~~le~~l~~lL~-p~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~k 137 (342)
T 1rq0_A 59 ELEIEKYEKELDQLYQELLFLLS-PEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIR 137 (342)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHS-CSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-ccccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccE
Confidence 346889999999998 778887 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCcccccc
Q psy8866 84 TVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKT 163 (278)
Q Consensus 84 sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNk~ 163 (278)
+|++.|+|++||++|++|+|||||||+|||++++|+|||||+|+|+|++++ +++.|+++||+++|+|||||||||||||
T Consensus 138 s~~~~I~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~-~~i~i~~~dl~i~~~RssGpGGQ~VNKt 216 (342)
T 1rq0_A 138 EVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEE-KDIEIRPEDLKIETFRASGHGGQYVNKT 216 (342)
T ss_dssp EEEEEEESTTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCG-GGSCCCGGGEEEEEECCCC----CCSSS
T ss_pred EEEEEEECcCHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccc-cccccChhHeEEEeecCCCCCCcccccc
Confidence 999999999999999999999999999999999999999999999999975 7899999999999999999999999999
Q ss_pred CceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC---CCceeeEEecCCCccc
Q psy8866 164 DSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIK---WGYQIRSYVLDKSRIK 240 (278)
Q Consensus 164 ~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~---~g~~iRtY~~~~~rVk 240 (278)
+|+|||+|+||||+|+|+++|||++||+.|+++|+++|+++..+++..+.+..+ +.+++ ||++||||||+|++||
T Consensus 217 ~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r--~~~i~~g~Rse~IRtYnf~~~rVt 294 (342)
T 1rq0_A 217 ESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKR--KSQIGTGERSEKIRTYNFPQNRVT 294 (342)
T ss_dssp SEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------------CCCEEEEEETTTTEEE
T ss_pred cceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccccccCCeEEEECCCCeee
Confidence 999999999999999999999999999999999999999998887766655444 34444 5668999999999999
Q ss_pred cccccccccCcccccCCCcHHHHHHHHHhhhhccc
Q psy8866 241 DLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKI 275 (278)
Q Consensus 241 D~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~~ 275 (278)
|||||++++|+++||+|+||+||++++.+..+..+
T Consensus 295 DhRt~~~~~~l~~vldGdLd~~I~a~l~~~~~~~l 329 (342)
T 1rq0_A 295 DHRINYTSYRLQEILDGDLDEIISKLIEHDIENNL 329 (342)
T ss_dssp ETTTTEEESCHHHHHTTCCHHHHHHHHHHHHTTTH
T ss_pred ecccCceeCCHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876554
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=6.3e-38 Score=253.17 Aligned_cols=99 Identities=28% Similarity=0.399 Sum_probs=95.8
Q ss_pred eeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccccccCceEEEEEcCCeeEEEEcCcC
Q psy8866 105 HRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDR 184 (278)
Q Consensus 105 Hr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h~Ptgi~v~~~~~R 184 (278)
|||||+|+|+++| |||++|.|+|+.+++..+.|+++||+++|+|||||||||||||+|||||+|+||||+|+|+++|
T Consensus 11 ~rvqrvp~tes~g---ts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~R 87 (115)
T 2rsm_A 11 LRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTR 87 (115)
T ss_dssp CCCCCCCCCCCCC---CCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSS
T ss_pred eeEEecCcccCCc---cceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCC
Confidence 7999999999998 9999999999998888899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy8866 185 SQHRNKSEAWDMLKSKLYKLKL 206 (278)
Q Consensus 185 Sq~~Nk~~A~~~L~~~L~~~~~ 206 (278)
||++||+.|+++|+++|+++..
T Consensus 88 SQ~~Nr~~A~~~L~~kL~e~~~ 109 (115)
T 2rsm_A 88 SVDQNRKIARKVLQEKVDVFYN 109 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998754
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.93 E-value=2.2e-26 Score=186.30 Aligned_cols=72 Identities=26% Similarity=0.441 Sum_probs=68.1
Q ss_pred ccccCcCCCCCeeEEEeeecCCCCccccccCceEEEE-EcCCe------------------------eEEEEcCcCCHHH
Q psy8866 134 NLINININPADLRIDTYRASGAGGQHINKTDSAVRIT-HIPTG------------------------IVVQCQNDRSQHR 188 (278)
Q Consensus 134 ~~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~-h~Ptg------------------------i~v~~~~~RSq~~ 188 (278)
+.+++.|+++||+++|+|||||||||||||+|+|+|+ |+|+| |+|+|+++|||++
T Consensus 11 ~~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 90 (112)
T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred cceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHH
Confidence 3567899999999999999999999999999999998 99997 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8866 189 NKSEAWDMLKSKLYKLK 205 (278)
Q Consensus 189 Nk~~A~~~L~~~L~~~~ 205 (278)
||++|+++|+++|+++.
T Consensus 91 Nr~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 91 NLAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.93 E-value=2.6e-26 Score=184.73 Aligned_cols=69 Identities=33% Similarity=0.593 Sum_probs=66.1
Q ss_pred cCcCCCCCeeEEEeeecCCCCccccccCceEEEEE------cC-----------------Ce-eEEEEcCcCCHHHHHHH
Q psy8866 137 NININPADLRIDTYRASGAGGQHINKTDSAVRITH------IP-----------------TG-IVVQCQNDRSQHRNKSE 192 (278)
Q Consensus 137 ~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~h------~P-----------------tg-i~v~~~~~RSq~~Nk~~ 192 (278)
++.|+++||+++|+|||||||||||||+|+|+|+| +| || |+|+|+++|||++||++
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 57899999999999999999999999999999999 89 88 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8866 193 AWDMLKSKLYKLK 205 (278)
Q Consensus 193 A~~~L~~~L~~~~ 205 (278)
|+++|+++|+++.
T Consensus 87 Al~rL~~~l~~a~ 99 (108)
T 2jva_A 87 ALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998764
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.92 E-value=2.7e-26 Score=192.34 Aligned_cols=103 Identities=30% Similarity=0.437 Sum_probs=88.6
Q ss_pred cCcCCCCCeeEEEeeecCCCCccccccCceEEEE------EcCC------------------eeEEEEcCcCCHHHHHHH
Q psy8866 137 NININPADLRIDTYRASGAGGQHINKTDSAVRIT------HIPT------------------GIVVQCQNDRSQHRNKSE 192 (278)
Q Consensus 137 ~~~i~~~dl~~~~~RssGpGGQ~VNk~~saVrl~------h~Pt------------------gi~v~~~~~RSq~~Nk~~ 192 (278)
++.|+++||+++|+|||||||||||||+|+|+|+ |+|+ +|+|+|+++|||++|+++
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~ 86 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREA 86 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHH
Confidence 6889999999999999999999999999999999 6997 599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCC--Cccccccccc
Q psy8866 193 AWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDK--SRIKDLRTNL 246 (278)
Q Consensus 193 A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~--~rVkD~R~~~ 246 (278)
|+++|.++|.++... ...+..++++++++.|+...+. +.+|..|..+
T Consensus 87 A~~rL~~~l~~a~~~-------pk~R~~tkpt~~s~~rRl~~Kk~rs~~K~~R~k~ 135 (140)
T 4dh9_Y 87 ALARLVAMIKELTTE-------KKARRPTRPTRASKERRLASKAQKSSVKAMRGKV 135 (140)
T ss_dssp HHHHHHHHHHHHHSC-------CCCCCCCCCSSTTTHHHHHHHHHHHHHTSCCC--
T ss_pred HHHHHHHHHHHhccC-------CCCCcCCCCcHHHHHHHHHHHHHHhHHhhccCCC
Confidence 999999999887643 2235678899999988887654 5588888654
No 11
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=43.71 E-value=26 Score=26.70 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=31.4
Q ss_pred CCCCccccccCc---eEEEEEcC-CeeEEEEcCcCCHHHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINKTDS---AVRITHIP-TGIVVQCQNDRSQHRNKSEAWDMLKSKLYKL 204 (278)
Q Consensus 154 GpGGQ~VNk~~s---aVrl~h~P-tgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~ 204 (278)
|+||+++++... +|+| ++| +.-.|+.... ...-+.|...|...+.++
T Consensus 43 G~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHH
Confidence 889999996543 6777 466 3335666665 455677777777766544
No 12
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=40.24 E-value=14 Score=26.17 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=31.9
Q ss_pred CCCCcccccc--CceEEEEEcCCe---eEEEEcCcCCHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINKT--DSAVRITHIPTG---IVVQCQNDRSQHRNKSEAWDMLKSKLY 202 (278)
Q Consensus 154 GpGGQ~VNk~--~saVrl~h~Ptg---i~v~~~~~RSq~~Nk~~A~~~L~~~L~ 202 (278)
|+||.++++- +|.++|.-.+.| -+|+.... ..+-..|.+.+..+|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 8999999854 678887766655 24555543 4566778888887774
No 13
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=36.68 E-value=31 Score=25.90 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=32.5
Q ss_pred CCCCcccccc--CceEEEEEcCCe------eEEEEcCcCCHHHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINKT--DSAVRITHIPTG------IVVQCQNDRSQHRNKSEAWDMLKSKLYKL 204 (278)
Q Consensus 154 GpGGQ~VNk~--~saVrl~h~Ptg------i~v~~~~~RSq~~Nk~~A~~~L~~~L~~~ 204 (278)
||||.++|+. +|.|+|...+.| -.|..... ..|-+.|..++...+.+.
T Consensus 33 GkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 33 GRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHH
Confidence 8999999954 578887765555 14444443 347777888888776543
No 14
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.16 E-value=1.7e+02 Score=22.47 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHh---hcCCCCCCCCceE-EEEEcCCChHHHHHHHHHHHHHHHHHHhhc
Q psy8866 3 KEIEDNTNKLNNKIKEIEFH---QFFNDPLDFNNCF-IDIQSGAGGIEAQDWASMLLRQYLRYCERK 65 (278)
Q Consensus 3 ~e~~~~~~~~~~~l~~~~~~---~ll~~~~d~~~~~-leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~ 65 (278)
+.+..|-..|++.++.||++ +.|.|+||..+.- |.++ -.=..+|..-.......++..|++.
T Consensus 22 ~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~-~NPa~~a~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 22 EELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMS-LNPTSVARQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEES-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeec-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778877755 2567999885544 3333 2233456555677777888888753
No 15
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=31.62 E-value=67 Score=24.31 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=33.8
Q ss_pred CCCCcccccc--CceEEEEEcCCe---eEEEEcCcCCHHHHHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINKT--DSAVRITHIPTG---IVVQCQNDRSQHRNKSEAWDMLKSKLYKLKL 206 (278)
Q Consensus 154 GpGGQ~VNk~--~saVrl~h~Ptg---i~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~ 206 (278)
||||-++++- +|.|+|.-.+.| -.|+.... . .+-+.|.+++...+.+.+.
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~--~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL--A-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC--H-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC--H-HHHHHHHHHHHHHHhhHHH
Confidence 8999999954 578887665554 13333332 3 6788899998888766554
No 16
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=30.63 E-value=65 Score=23.21 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=32.4
Q ss_pred CCCCccccc--cCceEEEEEcCC--------eeEEEEcCcCCHHHHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINK--TDSAVRITHIPT--------GIVVQCQNDRSQHRNKSEAWDMLKSKLYKLK 205 (278)
Q Consensus 154 GpGGQ~VNk--~~saVrl~h~Pt--------gi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~ 205 (278)
|+||.+++. ..|.++|.-.+. .-.|....+ ..+-..|...+...+.+..
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhccc
Confidence 889988883 346666654331 245666654 4577889999998886543
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=27.79 E-value=41 Score=23.56 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=27.8
Q ss_pred CCCCccccc--cCceEEEEEcCCe---eEEEEcCcCCHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINK--TDSAVRITHIPTG---IVVQCQNDRSQHRNKSEAWDMLKS 199 (278)
Q Consensus 154 GpGGQ~VNk--~~saVrl~h~Ptg---i~v~~~~~RSq~~Nk~~A~~~L~~ 199 (278)
||||.++|+ -+|.|+|...+.| -.|...... .+-+.|.+++..
T Consensus 21 G~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~---~~v~~A~~~I~~ 68 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDP---QGVQQAKRELLE 68 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESS---HHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCH---HHHHHHHHHHHH
Confidence 899999995 4688888776666 133333332 356667666654
No 18
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=25.11 E-value=85 Score=24.95 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=33.3
Q ss_pred eeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeec
Q psy8866 104 IHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRAS 153 (278)
Q Consensus 104 vHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~Rss 153 (278)
+-+|++|-.+ .++.+||-++.|.|.-.+ ++.|...++-+..++-|
T Consensus 13 lGkVV~V~~~---~kk~~WfPALVVsPs~~d--~v~vkKd~~LVRSFkDg 57 (117)
T 2yrv_A 13 LGKVVSVVSA---TERTEWYPALVISPSCND--DITVKKDQCLVRSFIDS 57 (117)
T ss_dssp TTSEEEEECS---SCSSCEEEEEEECCSSCS--SCCCCTTCEEEEESSSC
T ss_pred cCcEEEEecC---CCCCceeeeEEECCCCCC--CeeeccceEEEEeeccC
Confidence 4467777553 468899999999997754 56677888888877644
No 19
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.92 E-value=68 Score=23.87 Aligned_cols=47 Identities=28% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCCCcccccc--CceEEEEEcCCee----EEEEcCcCCHHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINKT--DSAVRITHIPTGI----VVQCQNDRSQHRNKSEAWDMLKSKLYK 203 (278)
Q Consensus 154 GpGGQ~VNk~--~saVrl~h~Ptgi----~v~~~~~RSq~~Nk~~A~~~L~~~L~~ 203 (278)
||||..+++. +|.|+|..-+.|- .|..... ..|-+.|.++|...+.+
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEEE 85 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHHH
Confidence 8899999854 5778877655551 3444432 26778888888776543
No 20
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=24.13 E-value=1.7e+02 Score=19.91 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=37.4
Q ss_pred HHHhhcCcEEEEeeecCCCcCceeEEEEEEecc------chhcccccccceeeEeeeCCCCCCC
Q psy8866 60 RYCERKGFIVEILEKSNGEITGIKTVTLKIKGK------YAYGFLKSESGIHRLVRKSPFDSSN 117 (278)
Q Consensus 60 ~~a~~~g~~~~~v~~~~~~~~g~~sa~~~i~G~------~ay~~lk~E~GvHr~~rvs~~~~~~ 117 (278)
......|.++.-+...... +...+.+.++.. .+...|+.-.||..+.|+++++-.|
T Consensus 24 ~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~~~~ 85 (88)
T 2ko1_A 24 GVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLEHHH 85 (88)
T ss_dssp HHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCCCCC
T ss_pred HHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccccccc
Confidence 3345678888777654432 244555555532 3456788889999999999998654
No 21
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=24.06 E-value=30 Score=27.65 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=33.2
Q ss_pred CCCCcccccc--CceEEEEEcCCee-------EEEEcCcCCHHHHHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINKT--DSAVRITHIPTGI-------VVQCQNDRSQHRNKSEAWDMLKSKLYKLKL 206 (278)
Q Consensus 154 GpGGQ~VNk~--~saVrl~h~Ptgi-------~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~ 206 (278)
|+||.+++.. .|.+++...+.+. .|....+. .+-+.|...+...|.+...
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~---~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHF---YASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECH---HHHHHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCH---HHHHHHHHHHHHHHHHHHH
Confidence 8899998854 4778876543331 55555532 4577788888888876543
No 22
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=23.42 E-value=42 Score=23.59 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCCCccccc--cCceEEEEEcC-----CeeEEEEcCcCCHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINK--TDSAVRITHIP-----TGIVVQCQNDRSQHRNKSEAWDMLKSKLY 202 (278)
Q Consensus 154 GpGGQ~VNk--~~saVrl~h~P-----tgi~v~~~~~RSq~~Nk~~A~~~L~~~L~ 202 (278)
|+||.+++. -.|.++|.-.+ +.-.|..... ..+-..|...+.+.+.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS---AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC---HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC---HHHHHHHHHHHHHHHH
Confidence 889988884 34666665433 1234555543 4566678887777663
No 23
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.93 E-value=55 Score=24.18 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCCCcccccc--CceEEEEEcC----CeeEEEEcCcCCHHHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINKT--DSAVRITHIP----TGIVVQCQNDRSQHRNKSEAWDMLKSKLYK 203 (278)
Q Consensus 154 GpGGQ~VNk~--~saVrl~h~P----tgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~ 203 (278)
||||.++++. +|.|+|...+ +|. |..... ..+-+.|.+++...+.+
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~-V~I~G~---~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQ-IKITGT---KEGIEKARHEVLLISAE 84 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCE-EEEEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCe-EEEEEC---HHHHHHHHHHHHHHhhc
Confidence 8999999954 4666655433 453 333332 46677788888777643
No 24
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=21.61 E-value=44 Score=23.34 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=28.0
Q ss_pred CCCCccccc--cCceEEEEEcCC--------eeEEEEcCcCCHHHHHHHHHHHHHHHH
Q psy8866 154 GAGGQHINK--TDSAVRITHIPT--------GIVVQCQNDRSQHRNKSEAWDMLKSKL 201 (278)
Q Consensus 154 GpGGQ~VNk--~~saVrl~h~Pt--------gi~v~~~~~RSq~~Nk~~A~~~L~~~L 201 (278)
|+||.+++. -.|.++|.-.+. .-.|..... ..+-..|...+.+.+
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRV 73 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES---HHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC---HHHHHHHHHHHHHHH
Confidence 889999884 346666654332 135555554 346677777777765
Done!