BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8867
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9PL92|RIR2_CHLMU Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdB PE=3 SV=1
Length = 346
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/338 (55%), Positives = 252/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI+M +DIELWK+ +
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELWKSNV- 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E SI+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKM+G E YQYILRDE++H NFG+DLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
TTE +EI ++ +A++LE YA D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346
>sp|Q9Z6S4|RIR2_CHLPN Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia
pneumoniae GN=nrdB PE=3 SV=1
Length = 346
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/340 (57%), Positives = 248/340 (72%), Gaps = 5/340 (1%)
Query: 17 FERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
+R+ K ++N DVNQLVP KY WAW+ YL+ CAN+W+P E+ M RDIELWK+
Sbjct: 10 LKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKSD- 68
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQAFEEA+HTH +
Sbjct: 69 ELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFL 128
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIV 194
YI ESLGLDE E+FNAY+E SIR KD+F + +DVL D F +++ + +K+L+
Sbjct: 129 YICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVL-DPNFSVQSSEGLGQFIKNLVG 187
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGIDLIN IK ENP
Sbjct: 188 YYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPE 247
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
+WTTE +EI L KA+ELE YA+D +P+GILGL F Y+R IA+ R+++IG+K
Sbjct: 248 VWTTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKP 307
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
I+ + RNPFPWMSE + + KE NFFETRV EYQ+ G L W
Sbjct: 308 IY-HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346
>sp|O84835|RIR2_CHLTR Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdB PE=1 SV=1
Length = 346
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>sp|Q9ZKC3|RIR2_HELPJ Ribonucleoside-diphosphate reductase subunit beta OS=Helicobacter
pylori (strain J99) GN=nrdB PE=3 SV=1
Length = 341
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>sp|P55983|RIR2_HELPY Ribonucleoside-diphosphate reductase subunit beta OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdB PE=3 SV=1
Length = 341
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>sp|P42521|RIR2_DICDI Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium
discoideum GN=rnrB-1 PE=2 SV=2
Length = 338
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 33/341 (9%)
Query: 18 ERINKIN---KQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
E INK + + I+ + D L P KY W Y + A+HW+ +EI++ D W+
Sbjct: 2 EEINKKDTFIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWE-- 59
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
LT+ ER + L FF+ +D + N+ + PE R + Q E IH+ Y
Sbjct: 60 YKLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETY 119
Query: 135 QYIVESLGLDEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191
++E+ D+ ++FNA I I+ K E+ + +I+ + +
Sbjct: 120 SLLIETYIKDKQTKDKLFNAIETIPCIKKKAEWALRWIN-------------DSDSFAER 166
Query: 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME 251
L+ FA + EG+FF F I L ++ M G + + I RDE +HC+F L ++ +
Sbjct: 167 LVAFAAV-EGIFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRK 225
Query: 252 -NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
+P K IE++ A+E E + +++P ++G+N ++ Y+ F A+ + +
Sbjct: 226 LDP--------KVIEKMIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSL 277
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGT 351
G K+IF NPF WM EMI ++++SNFFE +V EY G
Sbjct: 278 GYKKIFN-SSNPFEWM-EMISLQRKSNFFEGKVAEYAKTGV 316
>sp|P09938|RIR2_YEAST Ribonucleoside-diphosphate reductase small chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR2 PE=1
SV=2
Length = 399
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 48 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 107
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +D + N+V + PE
Sbjct: 108 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEA 165
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 166 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 221
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 222 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 272
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 273 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 324
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 325 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>sp|P50650|RIR2_PLAF4 Ribonucleoside-diphosphate reductase small chain OS=Plasmodium
falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1
Length = 349
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 169/344 (49%), Gaps = 23/344 (6%)
Query: 9 KKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDI 68
K+ + + ++ +IN++I+N +D L P Y WD Y + A+ W +EI++ D+
Sbjct: 15 KQEREFSDLQKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL 74
Query: 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 128
K+ L E E+ +K L FF+ +D + N+ R + E +++ Q E
Sbjct: 75 ---KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVEN 131
Query: 129 IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188
IH+ Y ++++ DE E N +H I++ I + + ND
Sbjct: 132 IHSETYSLLIDNYIKDEKERLNLFHAIEN-----------IPAVKNKALWAAKWINDTNS 180
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
IV +EG+ F F I +QNK+ G + + I RDE +H +F + + +
Sbjct: 181 FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLL 240
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
+ P + I+ + +A+E+E + +++P ++G+N + Y+ F+A+ ++
Sbjct: 241 DNKLPE-------QIIQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLE 293
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
+G +IF + +NPF WM ++I ++ ++NFFE RV +YQ G +
Sbjct: 294 CLGCSKIF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSGVM 335
>sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis
thaliana GN=RNR2A PE=1 SV=2
Length = 341
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W+ Y + A+ W +E+++ D++ W+ LT+ E+ + L FF+ +D
Sbjct: 31 MFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWE---ALTDSEKHFISHILAFFAASD 87
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + PE R + Q E IH+ Y ++E+ D E +FNA
Sbjct: 88 GIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIE 147
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I K ++ + +I ++ L+ FAC+ EG+FF F I
Sbjct: 148 TIPCISKKAKWCLDWI-------------QSPMSFAVRLVAFACV-EGIFFSGSFCAIFW 193
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F L + ++ + P +++ Q+ +A+E
Sbjct: 194 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLP-------LEKVYQIVHEAVE 246
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + +P ++G+N Y++F+A+ + +G ++ + E NPF WM E I ++
Sbjct: 247 IETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYKAE-NPFDWM-EFISLQ 304
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ +
Sbjct: 305 GKTNFFEKRVGEYQKASVM 323
>sp|Q6Y657|RIR2B_ARATH Putative ribonucleoside-diphosphate reductase small chain B
OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1
Length = 333
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 156/329 (47%), Gaps = 28/329 (8%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
I+ D + P +Y W+ Y + A+ W +E+++ +D W+N LT +ER +K
Sbjct: 9 ILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWEN--SLTNDERHFIK 66
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
L FF+ +D + N+ + E R + Q E IH+ Y ++++ D
Sbjct: 67 HVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 126
Query: 147 E---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +F A I + K E+ + +I+ Q + ++ FAC+ EG+F
Sbjct: 127 ERDHLFRAIETIPCVTKKAEWAMKWIN-------------GSQSFAERIVAFACV-EGIF 172
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
F F I L ++ M G + + I RDE +HC+F + + ++ +
Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKLDE-------DR 225
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
++ + A+E+E + D +P ++G+N + Y+ F+A+ + +G +++ NPF
Sbjct: 226 LKAIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLAALGCAKVYGVS-NPF 284
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTL 352
WM E+I ++ ++NFFE RV EYQ +
Sbjct: 285 DWM-ELISLQGKTNFFEKRVGEYQKASIM 312
>sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain OS=Nicotiana
tabacum PE=2 SV=1
Length = 329
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 155/329 (47%), Gaps = 29/329 (8%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
++ D + P +Y W+ Y + A+ W +E+++ D W+ LT ER +
Sbjct: 9 LLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGERHFIT 65
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
L FF+ +D + N+ + + E R + Q E IH+ Y ++ES D
Sbjct: 66 HVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSD 125
Query: 147 E---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +F A + K ++ + +ID + + L+ FAC+ EG+F
Sbjct: 126 EKSRLFRAVETNPCVEKKAKWALRWID-------------GSETFAERLVAFACV-EGIF 171
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
F F I L ++ M G + + I RDE +HC+F L + ++ + TE +
Sbjct: 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK-----LTE--ER 224
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
++ + A+E+E + D +P ++G+N Y+ F+A+ + +G +++ +NPF
Sbjct: 225 VKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYN-AQNPF 283
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTL 352
WM E+I ++ ++NFFE RV EYQ +
Sbjct: 284 DWM-ELISLQGKTNFFEKRVGEYQKASVM 311
>sp|P79733|RIR2_DANRE Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio
GN=rrm2 PE=1 SV=1
Length = 386
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 161/319 (50%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +D++ W + L +EER + L FF+ +D
Sbjct: 79 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS---LKDEERYFISHVLAFFAASD 135
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 136 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 195
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I + + + ++ FA + EG+FF F I
Sbjct: 196 TMPCVKKKADWALNWIG------------DKNARYGERVVAFAAV-EGIFFSGSFASIFW 242
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ T ++++ + A+E
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-INKPSEET------VKKIIMNAVE 295
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + D +P ++G+N K Y+ F+A+ + ++G +++ E NPF +M E I ++
Sbjct: 296 IEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLELGFDKVYRVE-NPFDFM-ENISLE 353
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ G +
Sbjct: 354 GKTNFFEKRVGEYQRMGVM 372
>sp|Q9KFH7|RIR2_BACHD Ribonucleoside-diphosphate reductase subunit beta OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=nrdB PE=1 SV=1
Length = 345
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 161/325 (49%), Gaps = 17/325 (5%)
Query: 27 IING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
I+NG ++V +++WA+ Y + AN W P EINM D + + LTE E+
Sbjct: 21 ILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQEAF 77
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
K+ +G + DS+ + + ++T + +F+E +H +Y Y++ SL
Sbjct: 78 KKIIGLLAFLDSVQTD-YSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKA 136
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ EIF + +++++EF+I + D + L+S IV+ I+EGL
Sbjct: 137 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVD-------NPTPKTFLES-IVYDVILEGLN 188
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L R KM+ +S + YI RDE +H ++ + +E P L T E
Sbjct: 189 FYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTF 248
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
++ +KA +LE + + I G+N + ++Y+ FIAN R Q+G+++ +P + NP
Sbjct: 249 VKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNP 308
Query: 323 FPWMSEMIHIKK-ESNFFETRVMEY 346
W+ + +S+FFE + +Y
Sbjct: 309 MKWIRAYEDVNSGKSDFFEQKSRQY 333
>sp|Q9C167|RIR2_NEUCR Ribonucleoside-diphosphate reductase small chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-2 PE=3 SV=2
Length = 410
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 155/320 (48%), Gaps = 27/320 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY+ W Y + A+ W +EI++ +D+ W N L ++E+ + L FF+ +D
Sbjct: 89 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNN--RLNDDEKFFISHILAFFAASD 146
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + PE R + Q E IH+ Y ++++ + + +FNA
Sbjct: 147 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAID 206
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I IR K ++ + +I T + L+ FA + EG+FF F I
Sbjct: 207 TIPCIRKKADWALRWI------------TDKSSTFAQRLVAFAAV-EGIFFSGAFASIFW 253
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +H +F L + + N + + +EI + A+
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN----NRPSKQLIQEI---IVDAVR 306
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P +LG+N K Y+ F+A+ + +G ++I+ NPF +M E I +
Sbjct: 307 IEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALGNEKIY-RSTNPFDFM-ENISLG 364
Query: 334 KESNFFETRVMEYQSGGTLD 353
++NFFE RV +YQ G ++
Sbjct: 365 GKTNFFEKRVGDYQKAGVMN 384
>sp|Q9LSD0|RIR2C_ARATH Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis
thaliana GN=TSO2 PE=2 SV=1
Length = 332
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 150/319 (47%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P Y W+ Y + A+ W +E+++ +D W+N L + ER +K L FF+ +D
Sbjct: 19 MFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWEN--SLNDGERHFIKHVLAFFAASD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + E R + Q E IH+ Y ++++ D E +F A
Sbjct: 77 GIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I + K ++ + +ID Q + +I FAC+ EG+FF F I
Sbjct: 137 TIPCVAKKAQWAMKWID-------------GSQTFAERIIAFACV-EGIFFSGSFCSIFW 182
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F L +K + + ++ + A+E
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSE-------ERVKSIVCDAVE 235
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + D +P ++G+N Y+ F+A+ + +G +++ NPF WM E+I ++
Sbjct: 236 IEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGV-TNPFDWM-ELISLQ 293
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ +
Sbjct: 294 GKTNFFEKRVGDYQKASVM 312
>sp|P50649|RIR2_PLAFG Ribonucleoside-diphosphate reductase small subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR2 PE=3 SV=1
Length = 322
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 154/328 (46%), Gaps = 21/328 (6%)
Query: 25 KQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
++I+N +D L P Y + Y + A W +EI+ D+ K+ L E E+
Sbjct: 2 RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDL---KDFEKLNENEKHF 58
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
+K L FF+ +D + N+ + R + E +++ Q E IH+ Y ++++ D
Sbjct: 59 IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
E E N +H I++ I + + ND IV +EG+ F
Sbjct: 119 EKERLNLFHAIEN-----------IPAVKNKALWAAKWINDTNSFAERIVANACVEGILF 167
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
F I +QNK+ G + + I RDE +H +F + + + + P KE
Sbjct: 168 SGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPEQMVQNIVKEA 227
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFP 324
+E+E + +++P ++G+N + Y+ F+A+ ++ +G +IF + +NPF
Sbjct: 228 -----GGVEVEKSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKNPFN 281
Query: 325 WMSEMIHIKKESNFFETRVMEYQSGGTL 352
WM ++I ++ ++NFFE RV +YQ G +
Sbjct: 282 WM-DLISLQGKTNFFEKRVADYQKSGVM 308
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus
auratus GN=RRM2 PE=2 SV=1
Length = 386
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 158/317 (49%), Gaps = 28/317 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
P +Y+ W Y + A+ W +E+++ +DI+ W+ L +ER + L FF+ +D +
Sbjct: 85 PIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWE---ALKPDERHFISHVLAFFAASDGI 141
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEI 155
N+V + + E R + Q E IH+ Y ++++ D E +FNA +
Sbjct: 142 VNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETM 201
Query: 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++ K ++ + +I D + G + ++ FA + EG+FF F I L
Sbjct: 202 PCVKKKADWALRWIG---DKEATYG---------ERVVAFAAV-EGIFFSGSFASIFWLK 248
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
++ M G + + I RDE +HC+F + + + P+ + ++++ A+ +E
Sbjct: 249 KRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-VHKPSE------QRVQEIITNAVRIE 301
Query: 276 YYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + +P ++G+N K Y+ F+A+ M ++G +IF E NPF +M E I ++ +
Sbjct: 302 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFKVE-NPFDFM-ENISLEGK 359
Query: 336 SNFFETRVMEYQSGGTL 352
+NFFE RV EYQ G +
Sbjct: 360 TNFFEKRVGEYQRMGVM 376
>sp|P31350|RIR2_HUMAN Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens
GN=RRM2 PE=1 SV=1
Length = 389
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 160/319 (50%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +DI+ W++ L EER + L FF+ +D
Sbjct: 82 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 138
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 139 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIE 198
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D + G + ++ FA + EG+FF F I
Sbjct: 199 TMPCVKKKADWALRWIG---DKEATYG---------ERVVAFAAV-EGIFFSGSFASIFW 245
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A+
Sbjct: 246 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-VHKPSE------ERVREIIINAVR 298
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N K Y+ F+A+ M ++G ++F E NPF +M E I ++
Sbjct: 299 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVE-NPFDFM-ENISLE 356
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ G +
Sbjct: 357 GKTNFFEKRVGEYQRMGVM 375
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus
norvegicus GN=Rrm2 PE=2 SV=1
Length = 390
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 159/319 (49%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +DI+ W+ L +ER + L FF+ +D
Sbjct: 83 VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKPDERHFISHVLAFFAASD 139
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIE 199
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D + G + ++ FA + EG+FF F I
Sbjct: 200 TMPCVKKKADWALRWIG---DKEATYG---------ERVVAFAAV-EGIFFSGSFASIFW 246
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + ++++ ++
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-VHKPSE------QRVKEIITNSVR 299
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N K Y+ F+A+ M ++G +IF E NPF +M E I ++
Sbjct: 300 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFKVE-NPFDFM-ENISLE 357
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ G +
Sbjct: 358 GKTNFFEKRVGEYQRMGVM 376
>sp|P11157|RIR2_MOUSE Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus
GN=Rrm2 PE=1 SV=1
Length = 390
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 156/319 (48%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +DI+ W+ L +ER + L FF+ +D
Sbjct: 83 VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKPDERHFISHVLAFFAASD 139
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIE 199
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D + G + ++ FA + EG+FF F I
Sbjct: 200 TMPCVKKKADWALRWIG---DKEATYG---------ERVVAFAAV-EGIFFSGSFASIFW 246
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + + + ++ A+
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAE-------QRVREIITNAVR 299
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N K Y+ F+A+ M ++G +IF E NPF +M E I ++
Sbjct: 300 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVE-NPFDFM-ENISLE 357
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ G +
Sbjct: 358 GKTNFFEKRVGEYQRMGVM 376
>sp|Q4R7Q7|RIR2_MACFA Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca
fascicularis GN=RRM2 PE=2 SV=1
Length = 389
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 159/320 (49%), Gaps = 28/320 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +DI+ W++ L EER + L FF+ +D
Sbjct: 82 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 138
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 139 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIE 198
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ + K ++ + +I D + G + ++ FA + EG+FF F I
Sbjct: 199 TMPCVEKKADWALRWIG---DKEATYG---------ERVVAFAAV-EGIFFSGSFASIFW 245
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A+
Sbjct: 246 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-VHKPSE------ERVREIIINAVR 298
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N K Y+ F+A+ M ++G ++F E NPF +M E I ++
Sbjct: 299 VEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVE-NPFDFM-ENISLE 356
Query: 334 KESNFFETRVMEYQSGGTLD 353
++NFFE RV EYQ G +
Sbjct: 357 GKTNFFEKRVGEYQRMGVMS 376
>sp|Q4R741|RIR2B_MACFA Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca
fascicularis GN=RRM2B PE=2 SV=1
Length = 351
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W Y + A+ W +E+++ +D+ W L +E+ + L FF+ +D
Sbjct: 44 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNK---LKADEKYFISHILAFFAASD 100
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + PE R + Q E +H+ Y ++++ D + +FNA
Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 160
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D K G + ++ FA + EG+FF F I
Sbjct: 161 TMPYVKKKADWALRWI---ADRKSTFG---------ERVVAFAAV-EGIFFSGSFAAIFW 207
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A++
Sbjct: 208 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL-VNKPSE------ERVREIIVDAVQ 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P G++G+N K Y+ F+A+ + ++G +IF E NPF +M E I ++
Sbjct: 261 IEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKIFQAE-NPFDFM-ENISLE 318
Query: 334 KESNFFETRVMEYQ 347
++NFFE RV EYQ
Sbjct: 319 GKTNFFEKRVSEYQ 332
>sp|P48592|RIR2_DROME Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila
melanogaster GN=RnrS PE=1 SV=2
Length = 393
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 159/319 (49%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +D+ W L ++ER + L FF+ +D
Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHR---LKDDERHFISHVLAFFAASD 142
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E +H+ Y ++++ D + +FNA
Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ +++ K ++ + +I K+ N + +I FA + EG+FF F I
Sbjct: 203 TMPAVKRKADWALSWISS------KSAN------FGERIIAFAAV-EGIFFSGSFASIFW 249
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + ++ P + I ++ A+
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHL-VQRPKR------ERIIEIIRDAVA 302
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + D +P ++G+N Y+ F+A+ + ++G+ +I+ +NPF +M EMI +
Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIY-NTKNPFNFM-EMISLD 360
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE +V EYQ G +
Sbjct: 361 GKTNFFEKKVGEYQRMGVV 379
>sp|O83092|RIR2_TREPA Ribonucleoside-diphosphate reductase subunit beta OS=Treponema
pallidum (strain Nichols) GN=nrdB PE=3 SV=1
Length = 351
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 163/334 (48%), Gaps = 17/334 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++++ G+T ++N KY W Y + N W+P+EINM D++ ++N L+ E+
Sbjct: 25 RRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYRN---LSAIEKT 81
Query: 84 LVKRNLGFFSTADSLAANNIV-LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
+ L F DS+ N+ +G Y ITA E L QAF+EA+H+ +Y Y+++++
Sbjct: 82 AYDKILSFLIFLDSIQTANLPNIGQY--ITANEINLCLTIQAFQEAVHSQSYSYMLDTIC 139
Query: 143 LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
E ++I DE L+ + +L + + K+ LLK I ++EG+
Sbjct: 140 SPE-----ERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVAIA-NYVLEGI 193
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
+FY GF+ LGR NKM GS + +YI RDE+ H +I ++ E P ++T +
Sbjct: 194 YFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQKEEPQVFTARNVR 253
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER-- 320
+ + E E + + + I GLN Y+R++ N R + +G + ++ R
Sbjct: 254 LFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGNLRCENLGFEPLYEGHRVE 313
Query: 321 -NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
W+S+ + +++FFE + Y +
Sbjct: 314 PESMSWVSQYSNANLIKTDFFEAKSTAYAKSSAM 347
>sp|Q8SRR2|RIR2_ENCCU Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0730 PE=3 SV=1
Length = 325
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 155/316 (49%), Gaps = 30/316 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L+P KY+ W Y + ++ W +E+++ +DI+ W L +ER + L FF+ +D
Sbjct: 20 LLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGK---LNAKERHFISYVLAFFAASD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + E R + Q E IH+ Y ++++ D E +F+A
Sbjct: 77 GIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDNDEKNFLFDAIR 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I S+++K ++ I +I+ + L+ FAC+ EG+FF F I
Sbjct: 137 TIPSVKEKADWAIRWIE------------DKNSDFATRLVAFACV-EGIFFSGAFASIFW 183
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC F L +K + C I+++ + A+E
Sbjct: 184 LKKRGLMPGLTFSNELISRDEGLHCEFACLLHYHLKKK---------CNRIKEVVMDAVE 234
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + +++P ++G+N Y+ F+A+ ++ +G ++++ NPF +M E I +
Sbjct: 235 IEKKFLSESLPVNLIGMNCNLMCRYIEFVADRLLENLGEERVYN-ATNPFDFM-ENISLV 292
Query: 334 KESNFFETRVMEYQSG 349
++NFF+ R +YQ
Sbjct: 293 GKTNFFDKRESQYQKA 308
>sp|Q6PEE3|RIR2B_MOUSE Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus
GN=Rrm2b PE=1 SV=1
Length = 351
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 155/314 (49%), Gaps = 28/314 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W Y + A+ W +E+++ +D+ W L +E+ + L FF+ +D
Sbjct: 44 IFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNK---LKSDEKYFISHILAFFAASD 100
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + PE R + Q E +H+ Y ++++ D + +FNA
Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 160
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D K G + ++ FA + EG+FF F I
Sbjct: 161 TMPYVKKKADWALRWI---ADRKSTFG---------ERVVAFAAV-EGIFFSGSFAAIFW 207
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + ++ A++
Sbjct: 208 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL-VNKPSE------DRVREIIADAVQ 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P G++G+N K Y+ F+A+ + ++G +IF E NPF +M E I ++
Sbjct: 261 IEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGELGFSKIFQAE-NPFDFM-ENISLE 318
Query: 334 KESNFFETRVMEYQ 347
++NFFE RV EYQ
Sbjct: 319 GKTNFFEKRVSEYQ 332
>sp|Q5R9G0|RIR2B_PONAB Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii
GN=RRM2B PE=2 SV=1
Length = 351
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W Y + A+ W +E+++ +D+ W L +E+ + L FF+ +D
Sbjct: 44 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNK---LKADEKYFISHILAFFAASD 100
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + PE R + Q E +H+ Y ++++ D + +FNA
Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 160
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D K G + ++ FA + EG+FF F I
Sbjct: 161 TMPYVKKKADWALRWI---ADRKSTFG---------ERVVAFAAV-EGVFFSGSFAAIFW 207
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A++
Sbjct: 208 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL-VNKPSE------ERVREIIVDAVK 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P G++G+N K Y+ F+A+ + ++G ++F E NPF +M E I ++
Sbjct: 261 IEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAE-NPFDFM-ENISLE 318
Query: 334 KESNFFETRVMEYQ 347
++NFFE RV EYQ
Sbjct: 319 GKTNFFEKRVSEYQ 332
>sp|P07201|RIR2_SPISO Ribonucleoside-diphosphate reductase small chain OS=Spisula
solidissima PE=2 SV=2
Length = 384
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 162/319 (50%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
++P +Y+ W Y + A+ W +E+++ +D+ W++ L +EE+ + L FF+ +D
Sbjct: 74 VLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASD 130
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 131 GIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIE 190
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ +++K ++ + +I+ + + ++ FA + EG+FF F I
Sbjct: 191 TMPCVKEKADWAMRWIN------------DDSSSYAERVVAFAAV-EGIFFSGSFASIFW 237
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + + P+ + I Q+ +A++
Sbjct: 238 LKKRGIMPGLTFSNELISRDEGLHCDFACLMFSHL-VNKPSQ------ERIHQIIDEAVK 290
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N + Y+ F+A+ + ++ +++ E NPF +M E I ++
Sbjct: 291 IEQVFLTEALPCRLIGMNCDLMRQYIEFVADRLLLELKCDKLYNKE-NPFDFM-EHISLE 348
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ G +
Sbjct: 349 GKTNFFEKRVGEYQKMGVM 367
>sp|Q7LG56|RIR2B_HUMAN Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens
GN=RRM2B PE=1 SV=1
Length = 351
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W Y + A+ W +E+++ +D+ W L +E+ + L FF+ +D
Sbjct: 44 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNK---LKADEKYFISHILAFFAASD 100
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + PE R + Q E +H+ Y ++++ D + +FNA
Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 160
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D K G + ++ FA + EG+FF F I
Sbjct: 161 TMPYVKKKADWALRWI---ADRKSTFG---------ERVVAFAAV-EGVFFSGSFAAIFW 207
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A++
Sbjct: 208 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL-VNKPSE------ERVREIIVDAVK 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P G++G+N K Y+ F+A+ + ++G ++F E NPF +M E I ++
Sbjct: 261 IEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAE-NPFDFM-ENISLE 318
Query: 334 KESNFFETRVMEYQ 347
++NFFE RV EYQ
Sbjct: 319 GKTNFFEKRVSEYQ 332
>sp|Q9DHU2|RIR2_YLDV Ribonucleoside-diphosphate reductase small chain OS=Yaba-like
disease virus GN=20L PE=3 SV=1
Length = 325
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 155/319 (48%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P Y W Y + A+ W +E+++ +D W + L++ E+ +K L FF+ +D
Sbjct: 18 VFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSDNEKNFIKHILAFFAASD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ Y + E R + Q E IH+ Y ++++ LD E +FNA
Sbjct: 75 GIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K + +I+ +KN + + L+ FA + EG+FF F I
Sbjct: 135 NMNCVKQKANWAKKWIE-----------SKN-RTYGERLVAFAAV-EGIFFSGSFAAIFW 181
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ ++ M G + + I RDE +HC+F + + NP L + + + ++A+
Sbjct: 182 IKKRGLMPGLTFSNELISRDEGLHCDFACIMFK--HLLNPPLNSV-----VRDIIIEAVN 234
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N K Y+ F+A+ + ++G + + +NPF +M E I ++
Sbjct: 235 IEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCDKYYC-SKNPFDFM-ENISLE 292
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ +
Sbjct: 293 GKTNFFEKRVSEYQKMSVM 311
>sp|O57175|RIR2_VACCA Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Ankara) GN=MVA032L PE=2 SV=1
Length = 319
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 155/322 (48%), Gaps = 29/322 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W+ Y + A+ W +E+++ +DI W LT +E+ +K L FF+ +D
Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNK---LTPDEKYFIKHVLAFFAASD 70
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ +I + + LI FA + EG+FF F I
Sbjct: 131 TMPCVKKKADWAQKWI-------------HDSAGYGERLIAFAAV-EGIFFSGSFASIFW 176
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ T + + A+
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-LHPPSEET------VRSIITDAVS 229
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + +P ++G+N + K+Y+ F+A+ + ++G K+I+ NPF +M E I ++
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNV-TNPFDFM-ENISLE 287
Query: 334 KESNFFETRVMEYQSGGTLDWE 355
++NFFE RV EYQ G + E
Sbjct: 288 GKTNFFEKRVGEYQKMGVMSQE 309
>sp|P42170|RIR2_CAEEL Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis
elegans GN=rnr-2 PE=3 SV=1
Length = 381
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 154/319 (48%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P K++ W+ Y + A+ W +E+++ +D+ W+ G +E+ + R L FF+ +D
Sbjct: 74 IFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQYFISRILAFFAASD 130
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + E R + Q E IH+ Y ++E+ DE E +FNA
Sbjct: 131 GIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIRDETERNTLFNAVD 190
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
E + I+ K ++ + +I + + LI FA + EG+FF F I
Sbjct: 191 EFEFIKKKADWALRWI------------SDKKASFAERLIAFAAV-EGIFFSGSFASIFW 237
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +H +F L + ++ + + I + A+
Sbjct: 238 LKKRGLMPGLTHSNELISRDEGLHRDFACLLYSKLQKKLTQ-------QRIYDIIKDAVA 290
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N + Y+ F+A+ + ++G +++ +NPF +M E I I
Sbjct: 291 IEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLVELGCDKLYK-SKNPFDFM-ENISID 348
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ G +
Sbjct: 349 GKTNFFEKRVSEYQRPGVM 367
>sp|O46310|RIR2_LEIAM Ribonucleoside-diphosphate reductase small subunit OS=Leishmania
amazonensis PE=3 SV=1
Length = 345
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 158/323 (48%), Gaps = 30/323 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y+ W +Y + W +EI++ D++ W L + ER +K L FF+ +D
Sbjct: 37 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSD 93
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD---ELEIFNAYH 153
+ N+ + PE R + Q E IH+ Y ++++ D +L + +A
Sbjct: 94 GIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 153
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I+ K E+ + +I G++ + Q + LI FA + EG+FF F +
Sbjct: 154 TIPCIQKKAEWPVRWI----------GSSASFQ---QRLIGFAAV-EGIFFSGSFCALFW 199
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINT-IKMENPNLWTTEFCKEIEQLFLKAI 272
L ++ M G + + I RDE +H +F L N+ IK + P + + ++ + A+
Sbjct: 200 LKKRGLMPGLTFSNELISRDEGLHTDFACLLYNSHIKHKLPR-------ERVLEIIVDAV 252
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+E + D +P ++G+N + Y+ F+A+ + +G ++ + PF +M EMI +
Sbjct: 253 NIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHY-RSTQPFDFM-EMISL 310
Query: 333 KKESNFFETRVMEYQSGGTLDWE 355
+ ++NFFE RV EYQ G + E
Sbjct: 311 QGKTNFFEKRVGEYQKAGVMSTE 333
>sp|P11158|RIR2_VACCW Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Western Reserve) GN=VACWR043 PE=2 SV=1
Length = 319
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 154/322 (47%), Gaps = 29/322 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W+ Y + A+ W +E+++ +DI W LT +E+ +K L FF+ +D
Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNK---LTPDEKYFIKHVLAFFAASD 70
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ +I + + LI FA + EG+FF F I
Sbjct: 131 TMPCVKKKADWAQKWI-------------HDSAGYGERLIAFAAV-EGIFFSGSFASIFW 176
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ T + + A+
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-LHPPSEET------VRSIITDAVS 229
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + +P ++G+N + K+Y+ F+A+ + ++G K+I+ NPF +M E I ++
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNV-TNPFDFM-ENISLE 287
Query: 334 KESNFFETRVMEYQSGGTLDWE 355
++NFFE RV EYQ G + E
Sbjct: 288 GKTNFFEKRVGEYQKMGVMSQE 309
>sp|Q197B2|RIR2_IIV3 Probable ribonucleoside-diphosphate reductase small subunit 048L
OS=Invertebrate iridescent virus 3 GN=IIV3-048L PE=3
SV=1
Length = 376
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 163/341 (47%), Gaps = 32/341 (9%)
Query: 32 TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGF 91
D PF+Y +D++ + HW +E+NMQ D+ W N L+E E+ + + L F
Sbjct: 48 ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWHNR--LSEAEKTFLVQILRF 105
Query: 92 FSTADSLAANNIVLGTYRHIT---APECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
F+ D ++ +G +++ PE R L EA+H +Y +++ +L L ++
Sbjct: 106 FTQGDV----DVAVGYVQYLQLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNLPDV-T 160
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKT------------GNTKNDQKLLKSLIVFA 196
+ + + K+++DK EF+ + +FK+ G + +++ + +F+
Sbjct: 161 YQEFLKYKAMKDKHEFVF-------NSRFKSTTVGRFFNYLLFGYDTHLEEIAVKIALFS 213
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN-PNL 255
+EG+ + F+ +L R M ++ Q+ + DE+ H N ++L +T+ +EN ++
Sbjct: 214 AFIEGVQLFSSFIMLLNFTRHGLMKKMGQIIQWSIADETHHTNSMMELFSTLVVENKSHI 273
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
+ K ++LE + + G + L KSY+R+I N R++ +G
Sbjct: 274 RLGVLEARVRDTARKIVQLEDGFIDLAFSMGEMRQLTADDVKSYIRYITNRRLQTMGYLP 333
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGG-TLDW 354
++ NP PW+ ++++ +NFFE + EY T DW
Sbjct: 334 LYSVVENPLPWVEDLLNAPSHTNFFENKPTEYAKASLTGDW 374
>sp|P20493|RIR2_VACCC Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Copenhagen) GN=F4L PE=2 SV=1
Length = 319
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 154/322 (47%), Gaps = 29/322 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W+ Y + A+ W +E+++ +DI W LT +E+ +K L FF+ +D
Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNK---LTPDEKYFIKHVLAFFAASD 70
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ +I + + LI FA + EG+FF F I
Sbjct: 131 TMPCVKKKADWAQKWI-------------HDSAGYGERLIAFAAV-EGIFFSGSFASIFW 176
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ T + + A+
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-LYPPSEET------VRSIITDAVS 229
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + +P ++G+N + K+Y+ F+A+ + ++G K+I+ NPF +M E I ++
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNV-TNPFDFM-ENISLE 287
Query: 334 KESNFFETRVMEYQSGGTLDWE 355
++NFFE RV EYQ G + E
Sbjct: 288 GKTNFFEKRVGEYQKMGVMSQE 309
>sp|P29883|RIR2_VACCP Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain L-IVP) GN=F14 PE=2 SV=1
Length = 319
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 156/321 (48%), Gaps = 33/321 (10%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W+ Y + A+ W +E+++ +DI W +T +E+ +K L FF+ +D
Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNK---VTPDEKYFIKHVLAFFAASD 70
Query: 97 SLAANNIV--LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNA 151
+ N+ T IT C Y R A E IH+ Y ++++ D E +FNA
Sbjct: 71 GIVNENLAERFCTEVQITEARCF-YGFRMAIEN-IHSEMYSLLIDTYVKDSNEKNYLFNA 128
Query: 152 YHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQI 211
+ ++ K ++ +I + + LI FA + EG+FF F I
Sbjct: 129 IETMPCVKKKADWAQKWI-------------HDSAGYGERLIAFAAV-EGIFFSGSFASI 174
Query: 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKA 271
L ++ M G + + I RDE +HC+F + + + P+ T + + A
Sbjct: 175 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-LHPPSEET------VRSIITDA 227
Query: 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIH 331
+ +E + +P ++G+N + K+Y+ F+A+ + ++G K+I+ NPF +M E I
Sbjct: 228 VSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNV-TNPFDFM-ENIS 285
Query: 332 IKKESNFFETRVMEYQSGGTL 352
++ ++NFFE RV EYQ G +
Sbjct: 286 LEGKTNFFEKRVGEYQKMGVM 306
>sp|Q9QTF2|RIR2_RSIV Ribonucleoside-diphosphate reductase small chain OS=Red sea bream
iridovirus GN=RR-2 PE=3 SV=1
Length = 312
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 150/311 (48%), Gaps = 29/311 (9%)
Query: 46 WDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVL 105
W Y + A+ W +E+++ D+ W + LTE ERR + L FF+ AD + +N+V
Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71
Query: 106 GTYRHIT-APECRQYLLRQAFEEAIHTHAYQYIVESLGLDE--LEIFNAYHEIKSIRDKD 162
+ + PE R + Q E IH Y ++ +L E +F+A ++ ++ K
Sbjct: 72 NFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131
Query: 163 EFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIG 222
++ +++ + + L+ FA + EG+ F F I L +++ M G
Sbjct: 132 QWAAQWLNA------------THKPIATRLLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178
Query: 223 SSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK-EIEQLFLKAIELEYYYAED 281
+ + I RDE +HC+F L +M N C+ + Q+ A+++E + +
Sbjct: 179 LAFSNELISRDEGLHCDFACMLFR--QMANKP------CQDDAHQIISDAVDIETAFFRE 230
Query: 282 TMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFET 341
+ +LG+N + K Y++F+A+ + +G +++ NPF +M I I+ ++NFFE
Sbjct: 231 ALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVS-NPFDFMDN-ISIEGKTNFFER 288
Query: 342 RVMEYQSGGTL 352
RV EYQ G
Sbjct: 289 RVSEYQRMGVF 299
>sp|Q6GZQ8|RIR2_FRG3G Putative ribonucleoside-diphosphate reductase small subunit 067L
OS=Frog virus 3 (isolate Goorha) GN=FV3-067L PE=3 SV=1
Length = 387
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 146/316 (46%), Gaps = 19/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+YNWA D HW+ EIN++ D+ WK+ + +T E+ V L F+ D
Sbjct: 75 PFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKSGV-MTPGEKAFVSCVLRLFTQLDVE 133
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+ + E R L A EAIH AY + ++LG+ + E + A+ + +
Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 192
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F+ + + L +SL+ A + EG+ + FV +L R
Sbjct: 193 TDKLDFM------------REMDCSTLPGLARSLLR-AVLNEGVSLFAAFVMLLTFQRSG 239
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDE++H L T+ E P + T + + ++ + ELE +
Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELEEAF 299
Query: 279 AEDTMPK--GILGLNVKTFKSYLRFIANCRMKQIGIKQIF--PYERNPFPWMSEMIHIKK 334
+ + + GL K K Y+ ++ N R +G+ ++ E P PW+ +I
Sbjct: 300 VDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLIDGAD 359
Query: 335 ESNFFETRVMEYQSGG 350
+NFFE V EY++GG
Sbjct: 360 LTNFFENHVTEYETGG 375
>sp|P33799|RIR2_VAR67 Ribonucleoside-diphosphate reductase small chain OS=Variola virus
(isolate Human/India/Ind3/1967) GN=C8L PE=2 SV=1
Length = 319
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 154/322 (47%), Gaps = 29/322 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W+ Y + A+ W +E+++ +DI W LT +E+ +K L FF+ +D
Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNK---LTPDEKYFIKHVLAFFAASD 70
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 71 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ +I + + LI FA + EG+FF F I
Sbjct: 131 TMPCVKKKADWAQKWI-------------HDSAGYGERLIAFAAV-EGIFFSGSFASIFW 176
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ T + + A+
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-LYPPSEET------VRSIITDAVS 229
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + +P ++G+N + K+Y+ F+A+ + ++G K+I+ NP +M E I ++
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNV-TNPSDFM-ENISLE 287
Query: 334 KESNFFETRVMEYQSGGTLDWE 355
++NFFE RV EYQ G + E
Sbjct: 288 GKTNFFEKRVGEYQKMGVMSQE 309
>sp|P36603|RIR2_SCHPO Ribonucleoside-diphosphate reductase small chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suc22 PE=3 SV=2
Length = 391
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 151/319 (47%), Gaps = 27/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY+ W Y + A+ W +EI++ +D+ W N L +ER + L +F+ +D
Sbjct: 78 LFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--LNADERYFISTVLAYFAASD 135
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI---FNAYH 153
+ N++ + PE R Q E IH+ Y ++++ + E F+A
Sbjct: 136 GIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAIL 195
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ SI+ K ++ + +I+ D L+ FA + EG+FF F I
Sbjct: 196 TMGSIKAKAKWALRWIN------------DEDSTYAIRLVAFAAV-EGIFFSGSFASIFW 242
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +H +F + + +K P K +E + ++A++
Sbjct: 243 LKKRGLMPGLTFSNELICRDEGLHTDFACLMFSHLK-HRPGR------KVVEAIIVEAVD 295
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E Y D +P +LG+N Y+ F+A+ + +G + + NPF +M E I +
Sbjct: 296 IEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDKYYNV-TNPFDFM-ENISLA 353
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE +V +YQ G +
Sbjct: 354 GKTNFFEKKVSDYQIAGVM 372
>sp|O15910|RIR2_TRYBB Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma
brucei brucei GN=RNR2 PE=2 SV=1
Length = 337
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 158/343 (46%), Gaps = 38/343 (11%)
Query: 21 NKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEE 80
++ + ++ + D + P KY W +Y + ++ W +EI++ D+ W+ L +
Sbjct: 13 GEVEEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDG 69
Query: 81 ERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVES 140
ER +K L FF+ +D + N+ + PE R + Q E IH+ Y ++++
Sbjct: 70 ERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDT 129
Query: 141 LGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+D E + +A I I K ++ I +I T + L+ FA
Sbjct: 130 YVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTSFPTR-------------LVAFAA 176
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL-----INTIKMEN 252
+ EG+FF F I L ++ M G + + I RDE +H +F L +N + +
Sbjct: 177 V-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKYIVNKLPRDR 235
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
+ ++ A+ +E + D +P ++G+N + Y+ F+A+ + +G
Sbjct: 236 -----------VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGY 284
Query: 313 KQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ + +NPF +M +MI ++ ++NFFE +V EYQ G + E
Sbjct: 285 DRHY-NSKNPFDFM-DMISLQGKTNFFEKKVGEYQKAGVMSSE 325
>sp|P0C8I0|RIR2_ASFK5 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-056
PE=3 SV=1
Length = 327
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 32/312 (10%)
Query: 44 WAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNI 103
W W + L S W QE++M +DI+ W+ + + +R K+ L FF AD + N+
Sbjct: 23 WNWYKKLESLT--WTAQEVDMCKDIDDWE---AMPKPQREFYKQILAFFVVADEIVIENL 77
Query: 104 VLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRD 160
+ R I E + QA +E +H+ AY V++L DE E IF+ + IR
Sbjct: 78 LTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIRK 137
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
+++ ++D + + L + L+ FA + EG+ F FV I L QN M
Sbjct: 138 MAQWVQQWMDPVKN------------SLGERLVGFAAV-EGILFQNHFVAIQFLKEQNIM 184
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL--EYY- 277
G ++I RDE MHC+F LI+ P K I ++ +A+EL E+
Sbjct: 185 PGLVSYNEFISRDEGMHCSFACFLISNYLNNIPEE------KIIHKILKEAVELVDEFIS 238
Query: 278 YAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE-MIHIKKES 336
YA D + G + + Y+R+ + + K I+ E NPFP M++ ++ +++
Sbjct: 239 YAFDKARGSVPGFSKEMLFQYIRYFTDNLCFMLQCKSIYKVE-NPFPQMTKFFLNEVEKT 297
Query: 337 NFFETRVMEYQS 348
NFFE R +YQ+
Sbjct: 298 NFFELRPTQYQN 309
>sp|Q91FE8|RIR2_IIV6 Probable ribonucleoside-diphosphate reductase small subunit 376L
OS=Invertebrate iridescent virus 6 GN=IIV6-376L PE=3
SV=1
Length = 360
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 30/344 (8%)
Query: 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94
N PF Y ++++ +HW+P E+ M D+ WKN L + +R + FF+
Sbjct: 8 NYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDWKN--RLNDNQRDFLTNIFRFFTQ 65
Query: 95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D A+ PE + A E +H AY Y++E+LG+ E + +
Sbjct: 66 GDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEA-TYKEFLM 124
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGN--TKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
+ ++DK +++ F D L N T++ + + + +F+ EG+ + F +L
Sbjct: 125 YEEMKDKQDYIKKFSDSRHILGKGEENLTTEDKEHIAAGIALFSGFTEGMQLFSTFAMLL 184
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN--------PNLW---TTEFC 261
M G ++ + + DE+ H I+L EN P++ +
Sbjct: 185 IFPLNGFMKGMGQIVTWSIVDETQHTEGMIELFKVFVEENKTGDQPIRPSVLQETVYKIA 244
Query: 262 KEIEQLFLKAIELEYYYAEDTM-----------PKGILGLNVKTFKSYLRFIANCRMKQI 310
KE+ L I+L + +D K GL + K+Y+++IA+ R+ +
Sbjct: 245 KEMVGLEEAFIDLVFKKYKDEPINDDNDLETKDNKDFFGLTPQRLKAYIKYIADRRLNLM 304
Query: 311 GIKQIF---PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGT 351
G K IF PY NP P + MI+ +NFFE R +Y + T
Sbjct: 305 GYKSIFNLEPYPTNPLPELEIMINAPTHTNFFENRSTDYANVST 348
>sp|P0C8I2|RIR2_ASFWA Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-054 PE=3 SV=1
Length = 327
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 151/314 (48%), Gaps = 36/314 (11%)
Query: 44 WAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNI 103
W W + L S W QE++M +DI+ W+ + + +R K+ L FF AD + N+
Sbjct: 23 WNWYKKLESLT--WTAQEVDMCKDIDDWE---AMPKPQREFYKQILAFFVVADEIVIENL 77
Query: 104 VLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRD 160
+ R I E + QA +E +H+ AY V++L DE E IF+ + I+
Sbjct: 78 LTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKK 137
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
+++ ++D TKN L + L+ FA + EG+ F FV I L QN M
Sbjct: 138 MAQWVRQWMD----------PTKNS--LGERLVGFAAV-EGILFQNHFVAIQFLKEQNIM 184
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL--EYY- 277
G ++I RDE +HC+F LI+ P K I ++ +A+EL E+
Sbjct: 185 PGLVSYNEFISRDEGVHCSFACFLISNYVYNIPEE------KIIHKILKEAVELVDEFIS 238
Query: 278 YAEDTMPKGILGLNVKTFKSYLRFIAN--CRMKQIGIKQIFPYERNPFPWMSE-MIHIKK 334
YA D + G + + Y+R+ + C M Q K I+ NPFP M++ ++ +
Sbjct: 239 YAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQ--CKSIYKV-GNPFPQMTKFFLNEVE 295
Query: 335 ESNFFETRVMEYQS 348
++NFFE R +YQ+
Sbjct: 296 KTNFFELRPTQYQN 309
>sp|P0C8I1|RIR2_ASFP4 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-056 PE=3 SV=1
Length = 327
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 36/314 (11%)
Query: 44 WAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNI 103
W W + L S W QE++M +DI+ W+ + + +R K+ L FF AD + N+
Sbjct: 23 WNWYKKLESLT--WTAQEVDMCKDIDDWE---AMPKSQREFYKQILAFFVVADEIVIENL 77
Query: 104 VLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRD 160
+ R I E + QA +E +H+ AY V++L DE E IF+ + I+
Sbjct: 78 LTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKK 137
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
+++ ++D TKN L + L+ FA + EG+ F FV I L QN M
Sbjct: 138 MAQWVRQWMD----------PTKNS--LGERLVGFAAV-EGILFQNHFVAIQFLKEQNIM 184
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL--EYY- 277
G ++I RDE +HC+F LI+ P + I ++ +A+EL E+
Sbjct: 185 PGLVSYNEFISRDEGVHCSFACFLISNYVYNIPEE------RIIHKILKEAVELVDEFIN 238
Query: 278 YAEDTMPKGILGLNVKTFKSYLRFIAN--CRMKQIGIKQIFPYERNPFPWMSE-MIHIKK 334
YA D + G + + Y+R+ + C M Q K I+ NPFP M++ ++ +
Sbjct: 239 YAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQ--CKSIYKV-GNPFPQMTKFFLNEVE 295
Query: 335 ESNFFETRVMEYQS 348
++NFFE R +YQ+
Sbjct: 296 KTNFFELRPTQYQN 309
>sp|P26713|RIR2_ASFM2 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-052 PE=3 SV=1
Length = 327
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 152/321 (47%), Gaps = 34/321 (10%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P ++ W+ Y + W QE++M +DI+ W+ + + +R K+ L FF AD
Sbjct: 14 IFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWE---AMPKPQREFYKQILAFFVVAD 70
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N++ R I E + QA +E +H+ AY V++L DE E IF+
Sbjct: 71 EIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIE 130
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ I+ +++ ++D + L + L+ FA + EG+ F FV I
Sbjct: 131 KHPIIKKMAQWVRQWMDPARN------------SLGERLVGFAAV-EGILFQNHFVAIQF 177
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L QN M G ++I RDE MHC+F LI+ P K I ++ +A+E
Sbjct: 178 LKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPEE------KIIHKILKEAVE 231
Query: 274 L--EYY-YAEDTMPKGILGLNVKTFKSYLRFIAN--CRMKQIGIKQIFPYERNPFPWMSE 328
L E+ YA D + G + + Y+R+ + C M Q K I+ NPFP M++
Sbjct: 232 LVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQ--CKSIYNV-GNPFPQMTK 288
Query: 329 -MIHIKKESNFFETRVMEYQS 348
++ +++NFFE R +YQ+
Sbjct: 289 FFLNEVEKTNFFELRPTQYQN 309
>sp|P42492|RIR2_ASFB7 Ribonucleoside-diphosphate reductase small chain OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-044 PE=3 SV=1
Length = 334
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 149/314 (47%), Gaps = 36/314 (11%)
Query: 44 WAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNI 103
W W + L S W QE++M +DI+ W+ + + +R K+ L FF AD + N+
Sbjct: 30 WNWYKKLESLT--WTAQEVDMCKDIDDWE---AMPKPQREFYKQILAFFVVADEIVIENL 84
Query: 104 VLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRD 160
+ R I E + QA +E +H+ AY V++L DE E IF+ + I+
Sbjct: 85 LTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKK 144
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
+++ ++D + L + L+ FA + EG+ F FV I L QN M
Sbjct: 145 MAQWVRQWMD------------PDRNTLGERLVGFAAV-EGILFQNHFVAIQFLKEQNIM 191
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL--EYY- 277
G ++I RDE +HC+F LI+ P K I ++ +A+EL E+
Sbjct: 192 PGLVSYNEFISRDEGVHCSFACFLISNYVYNIPEE------KIIHKILKEAVELVDEFIN 245
Query: 278 YAEDTMPKGILGLNVKTFKSYLRFIAN--CRMKQIGIKQIFPYERNPFPWMSE-MIHIKK 334
YA D + G + + Y+R+ + C M Q K I+ NPFP M++ ++ +
Sbjct: 246 YAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQ--CKSIYKV-GNPFPQMTKFFLNEVE 302
Query: 335 ESNFFETRVMEYQS 348
++NFFE R +YQ+
Sbjct: 303 KTNFFELRPTQYQN 316
>sp|Q89AS5|RIR2_BUCBP Ribonucleoside-diphosphate reductase subunit beta OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=nrdB PE=3 SV=1
Length = 376
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++N L + E+ + NL + + DS+ + + ++ PE
Sbjct: 49 WRPEEVDLSRDYIDFQN---LPQHEKHIFVSNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ +F E IH+ +Y +I+ ++ IF+ + K+I ++ + + + D L +L
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINTPSLIFDDIIDNKNIANRAKDIAKYYDDLIELT 165
Query: 177 -----FKTG-NTKNDQKL------LKSLIVFACI----MEGLFFYVGFVQILALGRQNKM 220
F G +T N +K+ LK + I +E + FYV F A + KM
Sbjct: 166 SYWHLFGEGKHTINGKKIKIDLHELKKKLYLCLISVNALEAIRFYVSFACSFAFAEREKM 225
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N + + N ++ KE + LF++ + E
Sbjct: 226 EGNAKIIRLIARDEALHLTSTQHILNILHNDKNNEGMSDISKECYEECYHLFIRVSDQEK 285
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G +LGLN + Y+ +I N RMK IG+ F NP PW++
Sbjct: 286 IWAKYLFQNGSMLGLNQEILSQYIEYITNIRMKAIGLPSPFKILSNPIPWIN 337
>sp|P32209|RIR2_SWPVK Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus
(strain Kasza) GN=C14L PE=3 SV=1
Length = 274
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 133/282 (47%), Gaps = 29/282 (10%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P KY+ W Y S A+ W +E+++ +D++ W LT++E+ +K L FF+++D
Sbjct: 14 IFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDK---LTKDEKYFIKHILAFFASSD 70
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ Y + E R + Q E IH+ Y ++++ D +E +FNA
Sbjct: 71 GIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIE 130
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
++ ++ K ++ +I + K+ +V +EG+FF F I
Sbjct: 131 TMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEGIFFSGSFAAIFW 176
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE-IEQLFLKAI 272
+ ++ M G + + I RDE +HC+F + + + P+ KE I + + A+
Sbjct: 177 IKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-LHPPS-------KEVITSIIIDAV 228
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
+E + +P ++G+N Y+ F+A+ + ++G ++
Sbjct: 229 NIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEK 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,581,767
Number of Sequences: 539616
Number of extensions: 5353671
Number of successful extensions: 12439
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 12133
Number of HSP's gapped (non-prelim): 119
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)