Query psy8867
Match_columns 355
No_of_seqs 135 out of 1097
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:23:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07209 ribonucleotide-diphos 100.0 1.2E-87 2.6E-92 653.6 38.6 340 16-355 30-369 (369)
2 COG0208 NrdF Ribonucleotide re 100.0 2.4E-82 5.2E-87 603.6 36.7 329 15-352 6-338 (348)
3 PRK09101 nrdB ribonucleotide-d 100.0 4E-79 8.7E-84 594.8 36.8 327 21-351 12-362 (376)
4 PTZ00211 ribonucleoside-diphos 100.0 9.7E-79 2.1E-83 584.1 35.3 305 23-353 10-317 (330)
5 PRK09614 nrdF ribonucleotide-d 100.0 2.7E-77 5.9E-82 574.0 37.0 308 25-350 1-313 (324)
6 PLN02492 ribonucleoside-diphos 100.0 2.3E-77 5.1E-82 573.5 35.3 301 25-351 1-304 (324)
7 PRK12759 bifunctional gluaredo 100.0 3.4E-75 7.4E-80 573.9 34.8 307 33-355 96-405 (410)
8 PRK13966 nrdF2 ribonucleotide- 100.0 4.2E-72 9.1E-77 535.5 34.8 302 26-351 6-314 (324)
9 KOG1567|consensus 100.0 1.1E-72 2.4E-77 505.9 22.1 309 20-353 20-331 (344)
10 cd01049 RNRR2 Ribonucleotide R 100.0 8.6E-69 1.9E-73 507.7 35.1 283 35-329 1-286 (288)
11 PRK13965 ribonucleotide-diphos 100.0 5.6E-69 1.2E-73 516.2 33.5 297 34-351 24-325 (335)
12 PRK13967 nrdF1 ribonucleotide- 100.0 4.7E-68 1E-72 507.6 33.6 297 34-351 11-312 (322)
13 PF00268 Ribonuc_red_sm: Ribon 100.0 7.9E-66 1.7E-70 485.7 29.8 271 34-327 8-281 (281)
14 PRK08326 ribonucleotide-diphos 100.0 4.2E-53 9.1E-58 403.0 31.2 257 46-316 28-290 (311)
15 cd07911 RNRR2_Rv0233_like Ribo 100.0 6.1E-52 1.3E-56 390.7 30.2 251 44-315 8-269 (280)
16 PF11583 AurF: P-aminobenzoate 98.6 4.9E-06 1.1E-10 79.5 18.0 179 54-255 46-234 (304)
17 cd01057 AAMH_A Aromatic and Al 98.1 0.0019 4.2E-08 65.0 24.6 219 76-315 70-301 (465)
18 PF05138 PaaA_PaaC: Phenylacet 97.7 0.014 3E-07 54.7 21.4 204 76-315 9-226 (263)
19 TIGR02156 PA_CoA_Oxy1 phenylac 97.7 0.031 6.6E-07 52.9 23.4 204 76-315 16-235 (289)
20 cd01050 Acyl_ACP_Desat Acyl AC 97.6 0.0034 7.4E-08 59.6 15.7 174 53-254 24-211 (297)
21 cd01058 AAMH_B Aromatic and Al 97.6 0.06 1.3E-06 51.5 24.1 217 43-279 60-284 (304)
22 PRK13778 paaA phenylacetate-Co 97.5 0.035 7.5E-07 53.0 22.0 204 76-315 34-253 (314)
23 PF02332 Phenol_Hydrox: Methan 97.5 0.0035 7.7E-08 57.6 15.1 161 76-253 66-232 (233)
24 PF11266 DUF3066: Protein of u 97.5 0.052 1.1E-06 47.3 21.7 197 78-314 4-207 (219)
25 PRK14983 aldehyde decarbonylas 97.2 0.016 3.4E-07 50.9 14.0 197 78-314 14-217 (231)
26 PF03405 FA_desaturase_2: Fatt 97.0 0.067 1.4E-06 51.4 17.8 174 54-254 27-217 (330)
27 cd00657 Ferritin_like Ferritin 97.0 0.018 3.9E-07 45.6 12.1 111 106-244 19-129 (130)
28 COG3396 Uncharacterized conser 96.9 0.29 6.4E-06 45.3 19.8 223 76-329 11-253 (265)
29 PF04305 DUF455: Protein of un 96.4 0.18 4E-06 46.8 15.3 142 77-252 62-212 (253)
30 PRK13654 magnesium-protoporphy 95.6 0.47 1E-05 45.3 14.3 212 70-322 72-292 (355)
31 CHL00185 ycf59 magnesium-proto 95.5 0.57 1.2E-05 44.6 14.5 212 70-322 68-288 (351)
32 TIGR02029 AcsF magnesium-proto 95.4 0.92 2E-05 43.0 15.3 212 70-322 62-282 (337)
33 PLN00179 acyl- [acyl-carrier p 95.2 0.72 1.6E-05 45.0 14.4 116 116-254 157-274 (390)
34 PRK13654 magnesium-protoporphy 95.2 0.045 9.8E-07 52.0 6.1 42 205-246 96-139 (355)
35 TIGR02029 AcsF magnesium-proto 95.2 0.048 1E-06 51.4 6.2 42 205-246 86-129 (337)
36 cd01047 ACSF Aerobic Cyclase S 95.1 0.05 1.1E-06 51.0 6.2 42 205-246 76-119 (323)
37 CHL00185 ycf59 magnesium-proto 94.9 0.061 1.3E-06 51.0 6.1 42 205-246 92-135 (351)
38 cd01047 ACSF Aerobic Cyclase S 94.8 0.89 1.9E-05 42.9 13.5 212 70-322 52-272 (323)
39 PLN02508 magnesium-protoporphy 94.7 0.99 2.1E-05 43.1 13.5 212 70-322 68-288 (357)
40 PLN02508 magnesium-protoporphy 94.1 0.072 1.6E-06 50.6 4.6 42 205-246 92-135 (357)
41 cd01044 Ferritin_CCC1_N Ferrit 93.0 4.3 9.3E-05 33.2 13.8 48 98-145 11-58 (125)
42 TIGR02158 PA_CoA_Oxy3 phenylac 91.9 10 0.00022 34.9 21.2 172 108-315 16-200 (237)
43 COG1633 Uncharacterized conser 91.0 10 0.00022 33.3 13.8 142 85-250 25-171 (176)
44 PF02915 Rubrerythrin: Rubrery 90.2 7 0.00015 31.6 11.6 40 106-145 19-60 (137)
45 cd01041 Rubrerythrin Rubreryth 87.0 13 0.00027 30.8 11.1 107 107-247 26-132 (134)
46 PF10118 Metal_hydrol: Predict 79.4 53 0.0012 30.5 18.0 134 90-250 34-175 (253)
47 TIGR03225 benzo_boxB benzoyl-C 76.2 66 0.0014 31.8 12.7 151 69-249 95-254 (471)
48 cd07908 Mn_catalase_like Manga 74.5 46 0.001 28.0 10.4 117 103-243 36-152 (154)
49 cd07908 Mn_catalase_like Manga 69.1 14 0.0003 31.2 5.9 68 213-281 39-119 (154)
50 PF08671 SinI: Anti-repressor 66.9 2.9 6.3E-05 25.5 0.9 15 288-302 15-29 (30)
51 cd01055 Nonheme_Ferritin nonhe 65.5 55 0.0012 27.5 8.9 68 212-281 27-98 (156)
52 PLN00179 acyl- [acyl-carrier p 65.5 22 0.00048 34.9 7.0 44 106-149 233-277 (390)
53 PF02915 Rubrerythrin: Rubrery 65.0 10 0.00023 30.5 4.2 76 199-278 11-99 (137)
54 cd01045 Ferritin_like_AB Uncha 64.6 71 0.0015 25.4 14.6 38 105-142 18-55 (139)
55 cd01050 Acyl_ACP_Desat Acyl AC 64.6 31 0.00068 32.9 7.8 42 106-147 168-212 (297)
56 PF03070 TENA_THI-4: TENA/THI- 64.4 99 0.0022 27.1 20.7 153 107-283 51-208 (210)
57 cd01051 Mn_catalase Manganese 63.9 93 0.002 26.6 12.3 105 112-248 51-155 (156)
58 PF03405 FA_desaturase_2: Fatt 62.7 35 0.00075 33.1 7.8 41 106-146 176-217 (330)
59 cd01045 Ferritin_like_AB Uncha 55.4 79 0.0017 25.2 8.0 61 220-280 26-103 (139)
60 cd01046 Rubrerythrin_like rubr 55.1 1.1E+02 0.0024 24.7 13.8 96 107-247 26-121 (123)
61 cd01051 Mn_catalase Manganese 50.7 84 0.0018 26.9 7.5 36 106-141 120-155 (156)
62 COG1528 Ftn Ferritin-like prot 47.0 66 0.0014 28.0 6.2 66 213-282 30-101 (167)
63 PF09959 DUF2193: Uncharacteri 46.8 1.8E+02 0.004 28.9 9.7 85 199-284 125-215 (499)
64 PF05067 Mn_catalase: Manganes 44.8 53 0.0011 31.1 5.7 73 52-143 123-196 (283)
65 PF12902 Ferritin-like: Ferrit 44.7 56 0.0012 29.9 5.8 39 211-250 19-57 (227)
66 cd01048 Ferritin_like_AB2 Unch 44.3 41 0.00089 27.9 4.5 59 223-281 28-100 (135)
67 PRK13456 DNA protection protei 42.6 2.4E+02 0.0053 25.0 9.5 82 196-279 28-123 (186)
68 cd07911 RNRR2_Rv0233_like Ribo 42.5 44 0.00094 31.4 4.9 55 83-139 11-70 (280)
69 COG2833 Uncharacterized protei 41.1 2.9E+02 0.0064 25.5 13.4 140 78-252 72-220 (268)
70 cd00657 Ferritin_like Ferritin 39.4 1.2E+02 0.0026 22.9 6.5 28 109-136 101-128 (130)
71 PF14518 Haem_oxygenas_2: Iron 39.2 94 0.002 24.1 5.7 18 129-146 17-34 (106)
72 PF10925 DUF2680: Protein of u 37.4 1.5E+02 0.0032 21.0 6.4 55 259-314 4-59 (59)
73 PF00210 Ferritin: Ferritin-li 37.4 2.1E+02 0.0046 22.7 7.9 82 198-283 11-100 (142)
74 PF11251 DUF3050: Protein of u 37.3 71 0.0015 29.2 5.1 165 90-278 30-228 (232)
75 COG1592 Rubrerythrin [Energy p 36.4 2.9E+02 0.0063 24.0 11.6 37 106-142 28-64 (166)
76 COG1633 Uncharacterized conser 35.4 1.6E+02 0.0035 25.7 7.0 47 198-250 36-82 (176)
77 cd01046 Rubrerythrin_like rubr 35.3 2.4E+02 0.0052 22.8 7.9 54 216-281 28-81 (123)
78 PF13668 Ferritin_2: Ferritin- 33.5 2.6E+02 0.0057 22.7 12.7 98 110-245 34-135 (137)
79 PF13668 Ferritin_2: Ferritin- 33.4 1.9E+02 0.0042 23.5 6.9 33 106-138 103-135 (137)
80 PRK10304 ferritin; Provisional 32.9 3.2E+02 0.0069 23.5 9.1 71 210-282 27-101 (165)
81 cd01041 Rubrerythrin Rubreryth 32.4 1.3E+02 0.0028 24.6 5.7 59 214-277 27-87 (134)
82 PF06945 DUF1289: Protein of u 29.9 46 0.001 22.8 2.1 23 66-91 25-47 (51)
83 cd01044 Ferritin_CCC1_N Ferrit 28.8 2.9E+02 0.0062 22.3 7.1 39 213-251 19-57 (125)
84 PF00268 Ribonuc_red_sm: Ribon 28.7 3.2E+02 0.0069 25.4 8.4 62 185-249 52-113 (281)
85 PF15466 DUF4635: Domain of un 27.6 1.1E+02 0.0025 24.8 4.2 61 221-285 67-127 (135)
86 TIGR00754 bfr bacterioferritin 27.5 3.7E+02 0.008 22.5 8.4 66 216-282 33-101 (157)
87 COG4883 Uncharacterized protei 26.7 4.6E+02 0.0099 25.3 8.7 41 199-239 126-167 (500)
88 PF06556 ASFV_p27: IAP-like pr 25.4 72 0.0016 25.4 2.7 60 286-347 4-81 (131)
89 cd07355 HN_L-delphilin-R2_like 23.7 1.9E+02 0.004 21.9 4.4 39 76-119 15-56 (80)
90 PF05974 DUF892: Domain of unk 22.9 4.7E+02 0.01 22.2 17.9 146 82-243 3-148 (159)
91 PRK15022 ferritin-like protein 22.6 5.1E+02 0.011 22.4 9.0 71 212-283 29-102 (167)
92 KOG3316|consensus 21.8 99 0.0021 26.5 3.0 37 197-233 39-76 (163)
93 cd01055 Nonheme_Ferritin nonhe 20.6 4.9E+02 0.011 21.5 13.0 112 109-250 30-141 (156)
94 COG3546 Mn-containing catalase 20.5 1.2E+02 0.0025 28.5 3.5 72 53-143 119-191 (277)
95 cd01049 RNRR2 Ribonucleotide R 20.1 7E+02 0.015 23.1 11.0 63 185-250 44-106 (288)
No 1
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=1.2e-87 Score=653.60 Aligned_cols=340 Identities=74% Similarity=1.236 Sum_probs=322.6
Q ss_pred ccccccccCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHh
Q psy8867 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95 (355)
Q Consensus 16 ~~~~~~~~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~ 95 (355)
+.++....+++|++|++++++++|++|||+|++|+++.++||+|+||||++|++||+++++||+.||++++++|++|+.+
T Consensus 30 ~~~~~~~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~ 109 (369)
T PRK07209 30 GAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTA 109 (369)
T ss_pred ccccccccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHH
Confidence 33566678899999999999999999999999999999999999999999999999822249999999999999999999
Q ss_pred hhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhh
Q psy8867 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDL 175 (355)
Q Consensus 96 Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~ 175 (355)
|++|++++...+++.++.||+++|+++|+++|+||+++||+++++++.+++++|+++.++|.+++|++|+.++++.+.++
T Consensus 110 Ds~v~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~ 189 (369)
T PRK07209 110 DSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDP 189 (369)
T ss_pred HHHHHHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc
Q psy8867 176 KFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255 (355)
Q Consensus 176 ~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~ 255 (355)
.....++++++++++++++|++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.++++++.|+|+.
T Consensus 190 ~~~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~ 269 (369)
T PRK07209 190 NFKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHL 269 (369)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 55556667788899999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhccccccc
Q psy8867 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335 (355)
Q Consensus 256 ~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~ 335 (355)
++++++++|++++++||++|.+|++++++.+++|||++++++||+|+||+||++||++++|++++||+|||+.+++++++
T Consensus 270 ~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~~LG~~~~y~~~~nP~~wm~~~~~~~~~ 349 (369)
T PRK07209 270 WTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKE 349 (369)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcHhHHHHHhccccc
Confidence 99999999999999999999999999999899999999999999999999999999999998789999999889999888
Q ss_pred CCCcccccccccccccccCC
Q psy8867 336 SNFFETRVMEYQSGGTLDWE 355 (355)
Q Consensus 336 ~nFFe~~~t~Y~~~~~~~~~ 355 (355)
+||||+|||+|+++++++||
T Consensus 350 tnFFE~rvt~Y~~~~~~~~d 369 (369)
T PRK07209 350 KNFFETRVIEYQTGGALSWD 369 (369)
T ss_pred CcccccchhhhhcccCcCCC
Confidence 89999999999999999998
No 2
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.4e-82 Score=603.58 Aligned_cols=329 Identities=38% Similarity=0.655 Sum_probs=300.3
Q ss_pred CccccccccCcccccCC-CCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHH
Q psy8867 15 NSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFS 93 (355)
Q Consensus 15 ~~~~~~~~~~~~i~~g~-~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~ 93 (355)
++.+.......++++|+ ++.++|+|++|||+|++|+++.+|||.|+||||++|+.||+ +||+.||+++.++|++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~---~Ls~~Ek~~~~~vl~~lt 82 (348)
T COG0208 6 NPTKNDELEEPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWK---KLSDDEKDLIIRVLAFLT 82 (348)
T ss_pred cccccCcccccccccCCccccccCCccccHHHHHHHHHHHhcCCCchhcCccccHHHHH---hCCHHHHHHHHHHHHHHH
Confidence 44555556666788876 78999999999999999999999999999999999999999 999999999999999999
Q ss_pred HhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHH-HHHhhCHHHHHHHHHHHHHHH
Q psy8867 94 TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE--LEIF-NAYHEIKSIRDKDEFLIPFID 170 (355)
Q Consensus 94 ~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~--~e~f-~~~~~~p~l~~k~~~i~~~~~ 170 (355)
++|++|++++.+.+.+.++.||+++++++|++||+||++|||+|+++++.++ .++| +|..++|.+++|++++...|+
T Consensus 83 ~lDsiq~~~~~~~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k~~~i~~~y~ 162 (348)
T COG0208 83 LLDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEKAEIILRYYD 162 (348)
T ss_pred HHHHHHhcchHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999854 4566 777799999999999999998
Q ss_pred HhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8867 171 VLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
+ .+++. .++ .+..+.+++++++++||++|||||+++++|++||+|||++++|++|+|||++|+.|++.+++.+++
T Consensus 163 ~-~~~~~---~~~-~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~ 237 (348)
T COG0208 163 D-LGDDP---DDP-LEEFLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVA 237 (348)
T ss_pred h-ccCCc---ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 33221 122 334455555558999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcc
Q psy8867 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMI 330 (355)
Q Consensus 251 e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~ 330 (355)
|+|+.+++++++++++++.+||++|++|++++++ +++||+.+.+++||+|+||+||++||++++|+...||+||++.+.
T Consensus 238 e~~~~~t~e~~~~~~~l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~NP~~~~~~~~ 316 (348)
T COG0208 238 ENPELWTAELKDEIYDLFKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWIELSL 316 (348)
T ss_pred hCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHhhc
Confidence 9999999999999999999999999999999999 699999999999999999999999999999976559999999989
Q ss_pred cccccCCCcccccccccccccc
Q psy8867 331 HIKKESNFFETRVMEYQSGGTL 352 (355)
Q Consensus 331 ~~~~~~nFFe~~~t~Y~~~~~~ 352 (355)
++++++||||+++++|++|++.
T Consensus 317 ~~~~~~dFFe~~~ssY~~~~~~ 338 (348)
T COG0208 317 SADEKTDFFEGRVSSYQKGSVA 338 (348)
T ss_pred cccccCCccccccchHHhhhcc
Confidence 8888889999999999998843
No 3
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=4e-79 Score=594.80 Aligned_cols=327 Identities=23% Similarity=0.413 Sum_probs=299.7
Q ss_pred cccCcccccCC-CCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHh
Q psy8867 21 NKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLA 99 (355)
Q Consensus 21 ~~~~~~i~~g~-~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v 99 (355)
+.-+++|++|+ +++..++|++|||+|++|+++.++||+|+||||++|++||+ +||+.||++++++|++|+.+|++|
T Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~lyk~~~~~fW~peEv~ls~D~~dw~---~Lt~~Er~~~~~~L~~lt~lDs~q 88 (376)
T PRK09101 12 DQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQ 88 (376)
T ss_pred ccccCCccCCCCccccccCchhhHHHHHHHHHHHhCCCCcccccccccHHHHH---hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999 78999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh--h
Q psy8867 100 ANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK--F 177 (355)
Q Consensus 100 ~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~--~ 177 (355)
++++...+++.+++||+++++++|+++|+||+++||+|+++++.+++++|+++.++|.+++|++|+.++|+++.+.. +
T Consensus 89 ~~~~~~~~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~~~~e~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~ 168 (376)
T PRK09101 89 GRSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISSYYDDLIEMTSYY 168 (376)
T ss_pred HHhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99998789999999999999999999999999999999999999999999999999999999999999999764321 0
Q ss_pred c---------------cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHH
Q psy8867 178 K---------------TGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGI 242 (355)
Q Consensus 178 ~---------------~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~ 242 (355)
+ ..+.+..+.+++++++ ++++||++|||||+++++|+++|+|+|++++|++|+|||++|+.|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva-~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~ 247 (376)
T PRK09101 169 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMS-VNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQ 247 (376)
T ss_pred hhcccccccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011224556777788 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--hCCccc--cHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q psy8867 243 DLINTIKM--ENPNLW--TTEFCKEIEQLFLKAIELEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317 (355)
Q Consensus 243 ~l~~~l~~--e~~~~~--~~~~~~~i~~l~~~ave~E~~~~~~~~~~~-i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~ 317 (355)
.++++++. |+|+.+ +++++++|++++++||++|++|++++++.+ ++||+++.+++||+|+||+||++||++++|+
T Consensus 248 ~l~~~l~~~~e~p~~~~~~~~~~~~v~~l~~eave~E~~~~~~l~~~~~i~Gl~~~~~~~Yi~Y~An~rL~~LG~~~~f~ 327 (376)
T PRK09101 248 HMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQ 327 (376)
T ss_pred HHHHHHhhcccChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 99999995 889866 899999999999999999999999999754 9999999999999999999999999999996
Q ss_pred CCCCcchHHHhcccccc-cCCCccccccccccccc
Q psy8867 318 YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGT 351 (355)
Q Consensus 318 ~~~nP~~w~~~~~~~~~-~~nFFe~~~t~Y~~~~~ 351 (355)
..+||+|||+.+++.++ ++||||+++|+|+++++
T Consensus 328 ~~~nP~~wm~~~~~~~~~~~nffE~~~~~Y~~~~~ 362 (376)
T PRK09101 328 TRSNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362 (376)
T ss_pred CCCCCHHHHHHHhcCCccccccccccHHHHhhccC
Confidence 45899999999999988 67999999999999864
No 4
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=9.7e-79 Score=584.11 Aligned_cols=305 Identities=29% Similarity=0.584 Sum_probs=287.4
Q ss_pred cCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhc
Q psy8867 23 INKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANN 102 (355)
Q Consensus 23 ~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~ 102 (355)
.+++|++||+++++++|++|||+|++|++++++||+|+|||+++|+.||+ +||+.||++++++|++|+.+|++|+++
T Consensus 10 ~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~---~Lt~~Er~~~~~~l~~~~~~D~~v~~~ 86 (330)
T PTZ00211 10 EEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWE---KLNDGERHFIKHVLAFFAASDGIVLEN 86 (330)
T ss_pred ccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8867 103 IVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKT 179 (355)
Q Consensus 103 l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~---e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~ 179 (355)
+...+++.++.||+++++++|+++|+||+++||+++++++.++. ++|+++.++|++++|++|+.+++++
T Consensus 87 ~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~-------- 158 (330)
T PTZ00211 87 LAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINS-------- 158 (330)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhc--------
Confidence 98889999999999999999999999999999999999998754 4899999999999999999988863
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHH
Q psy8867 180 GNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259 (355)
Q Consensus 180 ~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~ 259 (355)
.++++++++++ +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++++.|
T Consensus 159 -----~~~~~~~lv~~-~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~------ 226 (330)
T PTZ00211 159 -----SNSFAERLVAF-AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP------ 226 (330)
T ss_pred -----chHHHHHHHHH-HHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC------
Confidence 34589999996 569999999999999999999999999999999999999999999999999997765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccCCCc
Q psy8867 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFF 339 (355)
Q Consensus 260 ~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~nFF 339 (355)
++++++++++||++|.+|++++++.+++||+++++++||+|+||+||++||++++| +++||+|||+ .++.++++|||
T Consensus 227 -~~~i~~l~~~ave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f-~~~nP~~w~~-~~~~~~~tnFF 303 (330)
T PTZ00211 227 -RERVQEIIKEAVEIEREFICDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIY-NSKNPFDWMD-MISLQGKTNFF 303 (330)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcC-CCCCCchHHH-hcccccccccc
Confidence 47999999999999999999999988999999999999999999999999999999 5689999995 57787888999
Q ss_pred cccccccccccccc
Q psy8867 340 ETRVMEYQSGGTLD 353 (355)
Q Consensus 340 e~~~t~Y~~~~~~~ 353 (355)
|+|||+|+++++++
T Consensus 304 e~~~t~Y~k~~~~~ 317 (330)
T PTZ00211 304 EKRVGEYQKAGVMA 317 (330)
T ss_pred ccchhhhhcccccc
Confidence 99999999988765
No 5
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=2.7e-77 Score=574.02 Aligned_cols=308 Identities=31% Similarity=0.502 Sum_probs=289.0
Q ss_pred cccccCC-CCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhch
Q psy8867 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNI 103 (355)
Q Consensus 25 ~~i~~g~-~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l 103 (355)
++|++|+ +++.+++|++|||+|++|++++++||+|+|||+++|+.||+ +||+.||++++++|++|+.+|++|++++
T Consensus 1 ~~~~~g~~~~~~~~~~~~y~~~~~~y~~~~~~fW~peEi~~s~D~~dw~---~Lt~~Er~~~~~~l~~~~~~D~~v~~~~ 77 (324)
T PRK09614 1 RKIIGGNTYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWK---KLSDEEKNLYTRVFGGLTLLDTLQNNNG 77 (324)
T ss_pred CCCcCCCCcccccCCCcccHHHHHHHHHHHhCCCCCccccccchHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4688887 78999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCC
Q psy8867 104 VLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE--LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181 (355)
Q Consensus 104 ~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~ 181 (355)
.+.+.+.++.||+++++++|+++|+||+++||+++++++.++ .++|+++.++|++++|++|+.++++.+.
T Consensus 78 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~-------- 149 (324)
T PRK09614 78 MPNLMPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEIDEAFEWAEENPYLQKKADIIQDFYEPLK-------- 149 (324)
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--------
Confidence 889999999999999999999999999999999999998765 4589999999999999999999998642
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHH
Q psy8867 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261 (355)
Q Consensus 182 ~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~ 261 (355)
.+.+.+++++ ++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++|+|+.++++++
T Consensus 150 ---~~~~~~~~~~-~~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~ 225 (324)
T PRK09614 150 ---KKILRKAAVA-SVFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELK 225 (324)
T ss_pred ---HhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhhhHHHH
Confidence 2246777777 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCcchHHHhcccccc-cCCCc
Q psy8867 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNPFPWMSEMIHIKK-ESNFF 339 (355)
Q Consensus 262 ~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~-~~~nP~~w~~~~~~~~~-~~nFF 339 (355)
++|++++++||++|.+|++++++ ++| +++++++||+|+||+||++||++++|+ .++||+|||+...+.+. ++|||
T Consensus 226 ~~v~~l~~~ave~E~~~~~~~~~--~~G-~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~np~~w~~~~~~~~~~~~nFF 302 (324)
T PRK09614 226 DEIYDLLYELYENEEAYTELLYD--IVG-LAEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHDFF 302 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--cCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCChHHHHHhccCCCeecCCC
Confidence 99999999999999999999998 899 999999999999999999999999996 57899999987755544 67999
Q ss_pred ccccccccccc
Q psy8867 340 ETRVMEYQSGG 350 (355)
Q Consensus 340 e~~~t~Y~~~~ 350 (355)
|+|+++|++++
T Consensus 303 e~~~~~Y~~~~ 313 (324)
T PRK09614 303 EGKGTSYVKGA 313 (324)
T ss_pred cCCccceeecc
Confidence 99999999987
No 6
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=2.3e-77 Score=573.50 Aligned_cols=301 Identities=28% Similarity=0.577 Sum_probs=283.3
Q ss_pred cccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchH
Q psy8867 25 KQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIV 104 (355)
Q Consensus 25 ~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~ 104 (355)
++|+..|+++++++|++|||+|++|++++++||+|+|||+++|++||+ +||+.||++++++|++|+++|++|++++.
T Consensus 1 e~~l~en~~r~~~~p~~Y~~~~~ly~~~~~~fW~peEi~ls~D~~dw~---~Lt~~Er~~~~~il~~~~~~D~~v~~~~~ 77 (324)
T PLN02492 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWE---KLTDDERHFISHVLAFFAASDGIVLENLA 77 (324)
T ss_pred CcccccCCCCceecCCCcHHHHHHHHHHHHcCCChhhcChhhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred HhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCC
Q psy8867 105 LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE---LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181 (355)
Q Consensus 105 ~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~---~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~ 181 (355)
..+++.++.||+++++++|+++|+||+++||+++++++.++ .++|+++.++|.+++|++|+.+++++
T Consensus 78 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~---------- 147 (324)
T PLN02492 78 ARFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWALRWIDS---------- 147 (324)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhh----------
Confidence 88999999999999999999999999999999999998765 35799999999999999999988853
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHH
Q psy8867 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261 (355)
Q Consensus 182 ~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~ 261 (355)
.+++++++++++ ++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++.+.+ .
T Consensus 148 ---~~~~~~~lva~~-~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~-------~ 216 (324)
T PLN02492 148 ---SASFAERLVAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLS-------E 216 (324)
T ss_pred ---hHHHHHHHHHHH-hhhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC-------H
Confidence 456899999965 78999999999999999999999999999999999999999999999999996644 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccCCCccc
Q psy8867 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFET 341 (355)
Q Consensus 262 ~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~nFFe~ 341 (355)
+++++++++||++|++|++++++.+++||+.+.+++||+|+||+||++||++++| .++||+|||+ .++.++++||||+
T Consensus 217 ~~v~~l~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ad~~L~~lG~~~~f-~~~nP~~w~~-~~~~~~~tnFFe~ 294 (324)
T PLN02492 217 ERVKEIVCEAVEIEKEFVCDALPCALVGMNADLMSQYIEFVADRLLVALGYEKVY-NVVNPFDWME-LISLQGKTNFFEK 294 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcC-CCCCCchHHH-hcccccccccccc
Confidence 7899999999999999999999988999999999999999999999999999999 6789999995 5777778899999
Q ss_pred cccccccccc
Q psy8867 342 RVMEYQSGGT 351 (355)
Q Consensus 342 ~~t~Y~~~~~ 351 (355)
|+|+|+++++
T Consensus 295 ~~t~Y~k~~~ 304 (324)
T PLN02492 295 RVGEYQKAGV 304 (324)
T ss_pred chhhhhcccc
Confidence 9999999876
No 7
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=3.4e-75 Score=573.92 Aligned_cols=307 Identities=31% Similarity=0.532 Sum_probs=282.7
Q ss_pred CcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhc-CCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcC
Q psy8867 33 DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWK-NPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHI 111 (355)
Q Consensus 33 ~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~-~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~ 111 (355)
.+.+++|++|||+|++|+++.++||+|+|||+++|++||+ . +||++||++++++|++|+++|++|++++.+.+++.+
T Consensus 96 ~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~~--~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~~ 173 (410)
T PRK12759 96 FSKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG--KITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLF 173 (410)
T ss_pred cccccCCCccHHHHHHHHHHHHcCCCccccchhhhHHHhhhc--CCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 3778999999999999999999999999999999999996 2 699999999999999999999999999988899999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHH
Q psy8867 112 TAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191 (355)
Q Consensus 112 ~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (355)
+.||+++++++|+++|+||+++||+++++++.++++ |+.+.++|.+++|++|+.++. +.+.+.++++
T Consensus 174 ~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~~~~-~~~~~~~~~~~~k~~~~~~~~------------~~~~~~~~~~ 240 (410)
T PRK12759 174 KNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAMTDKIDFMMDAD------------PTTRRGLGLC 240 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHhhHHHHHHHHHHHhcC------------cchHHHHHHH
Confidence 999999999999999999999999999999987654 999999999999999987532 2234557888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH
Q psy8867 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKA 271 (355)
Q Consensus 192 lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~a 271 (355)
+++ .+++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.++++++.|+|+.+++++++++++++++|
T Consensus 241 lv~-~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~v~~~~~ea 319 (410)
T PRK12759 241 LAK-TVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKA 319 (410)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcChHHHHHHHHHHHHH
Confidence 887 5779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccCCCcccccccccccc
Q psy8867 272 IELEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGG 350 (355)
Q Consensus 272 ve~E~~~~~~~~~~~-i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~nFFe~~~t~Y~~~~ 350 (355)
|++|++|++++++.+ ++|++++++++||+|+||+||++||++++|+..+||+|||+..++..+++||||+|+|+|++++
T Consensus 320 ve~E~~~~~~~~~~~~i~Gl~~~~~~~Yiky~an~~L~~LG~~~~f~~~~nP~~w~~~~~~~~~~~nFFE~rvt~Y~~~~ 399 (410)
T PRK12759 320 VELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVAG 399 (410)
T ss_pred HHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCChhHHHHHhccccccCCccccHHHHhhcc
Confidence 999999999999874 8999999999999999999999999999995458999999865544557899999999999987
Q ss_pred cc-cCC
Q psy8867 351 TL-DWE 355 (355)
Q Consensus 351 ~~-~~~ 355 (355)
.. +||
T Consensus 400 ~~~~~~ 405 (410)
T PRK12759 400 LTGSWD 405 (410)
T ss_pred ccccch
Confidence 52 475
No 8
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=4.2e-72 Score=535.52 Aligned_cols=302 Identities=21% Similarity=0.351 Sum_probs=274.5
Q ss_pred ccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHH
Q psy8867 26 QIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVL 105 (355)
Q Consensus 26 ~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~ 105 (355)
+++.|-..+ +|+|++|||++++|+++.++||+|+|||+++|++||+ +||+.||++++++|++|+.+|++|++++..
T Consensus 6 ~~~~~~~~~-n~n~~~~~~~~~~~~~~~~nfW~peEi~l~~D~~dw~---~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~ 81 (324)
T PRK13966 6 KLIDRVSAI-NWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWG---TLTAGEKQLTMRVFTGLTMLDTIQGTVGAV 81 (324)
T ss_pred ccccccccc-cCCCcccHHHHHHHHHHHhCCCCccccCccchHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 455554444 8999999999999999999999999999999999999 999999999999999999999999999887
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCc
Q psy8867 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE--LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~ 183 (355)
.+.+.++.||+++|+++|+++|+||+++||+++++++.+. +++|+++.++|.+++|++|+.+++++
T Consensus 82 ~~~~~~~~pe~~~~~~~q~~~E~IHsesYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~------------ 149 (324)
T PRK13966 82 SLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQYYRG------------ 149 (324)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhcCHHHHHHHHHHHHHhcC------------
Confidence 8999999999999999999999999999999999998753 46899999999999999999999864
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHH
Q psy8867 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263 (355)
Q Consensus 184 ~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~ 263 (355)
.. .++++++ .+++||++|||||+++++|+++|+|+|++++|++|+|||++|+.|++.+++++.++.|+..+++++++
T Consensus 150 -~~-~~~~~va-~~~lEgi~FysgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~~~~~~ 226 (324)
T PRK13966 150 -DE-PLKRKVA-STLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDY 226 (324)
T ss_pred -Ch-HHHHHHH-HHHHhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 11 4678888 46899999999999999999999999999999999999999999999999999888899889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCcchHHHhccccc--ccCCC
Q psy8867 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE---RNPFPWMSEMIHIK--KESNF 338 (355)
Q Consensus 264 i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~---~nP~~w~~~~~~~~--~~~nF 338 (355)
+++++++||++|++|++++++ ++|++. ++++||+|+||+||++||++++|+.. .||++ +... +.. +++||
T Consensus 227 i~~l~~~av~~E~e~~~~~~~--~~Gl~~-~v~~Yi~y~An~~L~~lG~e~~f~~~~~~~nP~~-~~~~-~~~~~~~~dF 301 (324)
T PRK13966 227 TYELLFELYDNEVEYTQDLYD--EVGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPAI-LSAL-SPNADENHDF 301 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCChH-HHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCChh-HHhh-ccccccccCC
Confidence 999999999999999999984 689986 69999999999999999999999653 69975 5443 444 56799
Q ss_pred ccccccccccccc
Q psy8867 339 FETRVMEYQSGGT 351 (355)
Q Consensus 339 Fe~~~t~Y~~~~~ 351 (355)
||+|||+|++|++
T Consensus 302 Fe~r~t~Y~k~~~ 314 (324)
T PRK13966 302 FSGSGSSYVIGKA 314 (324)
T ss_pred CCCCCcccccccc
Confidence 9999999999864
No 9
>KOG1567|consensus
Probab=100.00 E-value=1.1e-72 Score=505.91 Aligned_cols=309 Identities=27% Similarity=0.562 Sum_probs=291.9
Q ss_pred ccccCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHh
Q psy8867 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLA 99 (355)
Q Consensus 20 ~~~~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v 99 (355)
...++++++..++.+++++|++|+..|+.|+++++.||+++|||+++|..||. +|+++||..+.++|++|+..|.+|
T Consensus 20 ~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~---~L~~~er~fIs~vlaffaasdGiv 96 (344)
T KOG1567|consen 20 EGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWE---KLNDDERHFISHVLAFFAASDGIV 96 (344)
T ss_pred ccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccchhhHH---HcChhhhhhHHHHHHHHhccccch
Confidence 34556889999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy8867 100 ANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176 (355)
Q Consensus 100 ~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~p~l~~k~~~i~~~~~~~~~~~ 176 (355)
.++++..+...++.||+|+++++|+++|+||++.||.++++++.|+.| +|+++.+.|.+++|++|..+|+.+
T Consensus 97 nenl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d----- 171 (344)
T KOG1567|consen 97 NENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISD----- 171 (344)
T ss_pred hHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcC-----
Confidence 999999999999999999999999999999999999999999988754 799999999999999999999964
Q ss_pred hccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc
Q psy8867 177 FKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256 (355)
Q Consensus 177 ~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~ 256 (355)
.+..+.+++|||+ ++|||+|.++|+.++||.++|+|||++-.+++|+|||.+|+.|.|.++.+|+++.+
T Consensus 172 -------~~s~faeRlvAFA-avEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~kp~--- 240 (344)
T KOG1567|consen 172 -------KDSLFAERLVAFA-AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKKKPN--- 240 (344)
T ss_pred -------CCccHHHHHHHHH-HHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcccHHHHHHHHHhhCCC---
Confidence 1345999999986 56999999999999999999999999999999999999999999999999998654
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccC
Q psy8867 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336 (355)
Q Consensus 257 ~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~ 336 (355)
+++|.+++.+||++|.+|....+|...+|||...|.+||+|+||+.|..||+++.| +++||+.||++ +++.+++
T Consensus 241 ----~~ri~eII~eAV~IEqef~~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Y-n~~NPFdfMEn-ISl~GKT 314 (344)
T KOG1567|consen 241 ----EERIEEIITEAVEIEQEFLTEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYY-NAENPFDFMEN-ISLAGKT 314 (344)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhccchhhhccCHHHHHHHHHHHHHHHHHHhCcccee-cCCCchHHHHH-hhhcccc
Confidence 48999999999999999999999999999999999999999999999999999999 89999999974 7888899
Q ss_pred CCccccccccccccccc
Q psy8867 337 NFFETRVMEYQSGGTLD 353 (355)
Q Consensus 337 nFFe~~~t~Y~~~~~~~ 353 (355)
||||+||++||++++++
T Consensus 315 NFFEKrVseYQk~~vMs 331 (344)
T KOG1567|consen 315 NFFEKRVSEYQKAGVMS 331 (344)
T ss_pred chHHhhhHHhhhchhcc
Confidence 99999999999988765
No 10
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=8.6e-69 Score=507.70 Aligned_cols=283 Identities=40% Similarity=0.774 Sum_probs=269.9
Q ss_pred ccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChH
Q psy8867 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAP 114 (355)
Q Consensus 35 ~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~ 114 (355)
++++|++|||+|++|++++++||.|+|||+++|++||+ +||+.||+++++++++|+.+|++|++++.+.+.+.++.|
T Consensus 1 ~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~~~~---~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~ 77 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWE---KLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIP 77 (288)
T ss_pred CCCCccccHHHHHHHHHHHHcCCChhhcchhhhHHHHh---HCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChH
Confidence 47899999999999999999999999999999999999 999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHH
Q psy8867 115 ECRQYLLRQAFEEAIHTHAYQYIVESLGLD--ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192 (355)
Q Consensus 115 E~~~~~~~q~~~E~iH~~sYs~il~~l~~~--~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 192 (355)
|+++|+++|+++|+||+++|++++++++.+ ++++|+++.++|.+++|++++.+++++..+ ++++++++++
T Consensus 78 e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~--------~~~~~~~~~l 149 (288)
T cd01049 78 EARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAIETDPALKKKADWILRWYDNLDD--------NTKESFAERL 149 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhcCHHHHHHHHHHHHHHHhhhh--------chHHHHHHHH
Confidence 999999999999999999999999999987 578999999999999999999999987532 2467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Q psy8867 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272 (355)
Q Consensus 193 v~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~av 272 (355)
++| +++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++++++++|+.++++++++|++++++||
T Consensus 150 v~~-~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av 228 (288)
T cd01049 150 VAF-AILEGIFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAV 228 (288)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHH
Confidence 997 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCcchHHHhc
Q psy8867 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE-RNPFPWMSEM 329 (355)
Q Consensus 273 e~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~-~nP~~w~~~~ 329 (355)
++|++|++++++.+++|++.+++++||+|+||+||.+||++++|+.. +||+|||+.+
T Consensus 229 ~~E~~~~~~~~~~~~~g~~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~ 286 (288)
T cd01049 229 ELEKEFARDLLPDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELI 286 (288)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999654 8999999864
No 11
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=5.6e-69 Score=516.19 Aligned_cols=297 Identities=20% Similarity=0.277 Sum_probs=260.9
Q ss_pred cccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCCh
Q psy8867 34 VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITA 113 (355)
Q Consensus 34 ~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~ 113 (355)
-.+++|++|||+|++|+++.++||+|+|||+++|++||+ +||++||++++++|++|+++|++|++.+.....+....
T Consensus 24 ~~n~~~~~~~~~~~~~~~~~~nfW~peEI~ls~D~~dw~---~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~ 100 (335)
T PRK13965 24 SINWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWR---SLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQT 100 (335)
T ss_pred cccccCcccHHHHHHHHHHHHcCCCccccCchhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccc
Confidence 348999999999999999999999999999999999999 99999999999999999999999998765555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHH
Q psy8867 114 PECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191 (355)
Q Consensus 114 ~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (355)
++.++++++|+++|+||++|||+++++++.+++ ++|+++.++|.+++|++|+.+++++. ..+++
T Consensus 101 ~~e~~~l~~q~~~E~IHs~sYs~il~tl~~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~--------------~~~~~ 166 (335)
T PRK13965 101 DHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVVSTESLQRRARVLIPYYTGD--------------DPLKS 166 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--------------cHHHH
Confidence 666999999999999999999999999987653 58999999999999999999998631 24778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH
Q psy8867 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKA 271 (355)
Q Consensus 192 lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~a 271 (355)
+++ .+++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++++..+.+...+++++++|++++++|
T Consensus 167 ~va-~~~lEGi~FysgFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~~~~~e~~~~~~~~v~~l~~ea 245 (335)
T PRK13965 167 KVA-AAMMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYEL 245 (335)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 888 4689999999999999999999999999999999999999999999999988766543336778999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCcchHHHhcc--cccccCCCcccccccccc
Q psy8867 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE-RNPFPWMSEMI--HIKKESNFFETRVMEYQS 348 (355)
Q Consensus 272 ve~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~-~nP~~w~~~~~--~~~~~~nFFe~~~t~Y~~ 348 (355)
|++|++|++++++ .+|++.+ +++||+|+||+||++||++++|+.. ++|.|+...++ ..++++||||+|||+|++
T Consensus 246 v~~E~~~~~~~~~--~~g~~~~-~~~Yi~y~an~~L~~LG~~~~f~~~~~~~~p~~~~~~~~~~~~~~dFFe~~~t~Y~~ 322 (335)
T PRK13965 246 IDLEKAYLRELYA--GFDLAED-AIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSARADENHDFFSGNGSSYVM 322 (335)
T ss_pred HHHHHHHHHHHHh--CCCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhCccccccCCCCCCCCCcCee
Confidence 9999999999997 5899755 9999999999999999999999553 44454222233 335678999999999999
Q ss_pred ccc
Q psy8867 349 GGT 351 (355)
Q Consensus 349 ~~~ 351 (355)
|++
T Consensus 323 ~~~ 325 (335)
T PRK13965 323 GIT 325 (335)
T ss_pred ccc
Confidence 864
No 12
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=4.7e-68 Score=507.57 Aligned_cols=297 Identities=18% Similarity=0.280 Sum_probs=267.0
Q ss_pred cccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCCh
Q psy8867 34 VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITA 113 (355)
Q Consensus 34 ~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~ 113 (355)
-.+|+.++|+|...+|+++.++||.|+|||+++|++||+ +||++||++++++|++|+.+|++|+.++.+.+...++.
T Consensus 11 ~~nwn~~~~~~~~~~~~~~~~~fW~peEI~ls~D~~dw~---~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~~~ 87 (322)
T PRK13967 11 AINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQ---TLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVT 87 (322)
T ss_pred cCCCCCccchhhHHHHHHHHhCCCCccccCchhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCC
Confidence 458999999999999999999999999999999999999 99999999999999999999999999888778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHH
Q psy8867 114 PECRQYLLRQAFEEAIHTHAYQYIVESLGLDE--LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191 (355)
Q Consensus 114 ~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (355)
||+++|+++|+++|+||++|||+++++++.++ +++|+++.++|.+++|++|+.+++++ ...+++
T Consensus 88 ~e~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~--------------~~~~~~ 153 (322)
T PRK13967 88 PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQIIVDYYRG--------------DDALKR 153 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCHHHHHHHHHHHHHhcC--------------CcHHHH
Confidence 99999999999999999999999999998753 57899999999999999999998863 125677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHH
Q psy8867 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKA 271 (355)
Q Consensus 192 lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~a 271 (355)
+++ ++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.++.....+.+....+++++++.+++.+|
T Consensus 154 ~v~-~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~~~~~l~~~~ 232 (322)
T PRK13967 154 KAS-SVMLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTL 232 (322)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 777 5789999999999999999999999999999999999999999999997755555444334455788899999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcc-hHHHhcccccc--cCCCcccccccccc
Q psy8867 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF-PWMSEMIHIKK--ESNFFETRVMEYQS 348 (355)
Q Consensus 272 ve~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~-~w~~~~~~~~~--~~nFFe~~~t~Y~~ 348 (355)
+++|++|+.++++ ++|++.+ +++||+|+||+||++||++|+|+..++|. ||+..++++.+ ++||||+|+|+|++
T Consensus 233 ~~~E~~~~~~~~~--~~Gl~~~-v~~yi~Y~an~rL~~LGl~~~f~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k 309 (322)
T PRK13967 233 YANEIDYAHDLYD--ELGWTDD-VLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVM 309 (322)
T ss_pred HHHHHHHHHHHhC--cCCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhccccCccCCCCCCCCccccc
Confidence 9999999999984 7999854 88999999999999999999997666774 88877888655 66999999999999
Q ss_pred ccc
Q psy8867 349 GGT 351 (355)
Q Consensus 349 ~~~ 351 (355)
|++
T Consensus 310 ~~~ 312 (322)
T PRK13967 310 GTH 312 (322)
T ss_pred cCc
Confidence 864
No 13
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=100.00 E-value=7.9e-66 Score=485.67 Aligned_cols=271 Identities=42% Similarity=0.742 Sum_probs=243.5
Q ss_pred cccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCCh
Q psy8867 34 VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITA 113 (355)
Q Consensus 34 ~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~ 113 (355)
..+++|++||++|++|++++++||.|+|||+++|+.+|+ +||+.||++++++|++|+.+|++|++++.+.+++.+++
T Consensus 8 ~~~~~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~~~~~---~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~~~~~~ 84 (281)
T PF00268_consen 8 AINWNPIKYPWFWDLYKKAESNFWTPEEIDMSKDIKDWK---KLSEEEREAYKRILAFFAQLDSLVSENLLPNIMPEITS 84 (281)
T ss_dssp TTCTTS-SSHHHHHHHHHHHHT---GGGS-GGGHHHHHH---HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCCCCCCHHHHHHHHHHHhCCCCchhcChhhhHHHHH---hCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCH
Confidence 346699999999999999999999999999999999999 89999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHH
Q psy8867 114 PECRQYLLRQAFEEAIHTHAYQYIVESLGLDE---LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190 (355)
Q Consensus 114 ~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~---~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (355)
||+++|+++|+++|+||+++|++++++++.++ .++|+++.++|.+++|++++.+++++ ..++.+
T Consensus 85 ~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~-------------~~~~~~ 151 (281)
T PF00268_consen 85 PEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYED-------------NDSLAE 151 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCS-------------SSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhchh-------------hhhHHH
Confidence 99999999999999999999999999999665 35799999999999999999987753 123677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Q psy8867 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270 (355)
Q Consensus 191 ~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ 270 (355)
++++ ++++|||+|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.|++| + +...++|++++++
T Consensus 152 ~lv~-~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e-~----~~~~~~i~~l~~e 225 (281)
T PF00268_consen 152 KLVA-SVILEGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEE-N----KPEEEEIYELFDE 225 (281)
T ss_dssp HHHH-HHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c----chHHHHHHHHHHH
Confidence 8877 57899999999999999999999999999999999999999999999999999987 2 2346899999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHH
Q psy8867 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327 (355)
Q Consensus 271 ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~ 327 (355)
||++|.+|++..++.+++|++++++++||+|+||+||.+||++|+| +++||.+||+
T Consensus 226 av~~E~~~~~~~~~~~~~gl~~~~~~~yi~y~an~~L~~lG~~~~y-~~~~~~~~~~ 281 (281)
T PF00268_consen 226 AVELEIEFIDDILPGDIIGLNKEDIKQYIKYNANRRLRNLGFEPIY-NVENPFPWME 281 (281)
T ss_dssp HHHHHHHHHHTTSTGGGTTBSHHHHHHHHHHHHHHHHHHTTS--SS-TTCCSSTTHC
T ss_pred HHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCC
Confidence 9999999999888878999999999999999999999999999999 6788999983
No 14
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=4.2e-53 Score=402.96 Aligned_cols=257 Identities=21% Similarity=0.287 Sum_probs=228.9
Q ss_pred HHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCCh---HHHHHHHHH
Q psy8867 46 WDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITA---PECRQYLLR 122 (355)
Q Consensus 46 ~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~---~E~~~~~~~ 122 (355)
.++|++++++||+|+|||+++|++||+ +||+.||+++++++++|+.+|+.|+.++.+ ++..++. ||+++|+++
T Consensus 28 ~~ly~~~~~~fW~peEidls~D~~dw~---~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~-~i~~~~~~~~~e~~~~l~~ 103 (311)
T PRK08326 28 MKLFAKGNAKFWNPADIDFSRDAEDWE---KLSDEERDYATRLCAQFIAGEEAVTLDIQP-LISAMAAEGRLEDEMYLTQ 103 (311)
T ss_pred HHHHHHHHHcCCCHHhcCccchHHHHH---hCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHhhccccCCHHHHHHHHH
Confidence 569999999999999999999999999 999999999999999999999999999974 5556655 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHH-HHHhhhhhhccCCCcchHHHHHHHHHHHHHHHH
Q psy8867 123 QAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201 (355)
Q Consensus 123 q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEg 201 (355)
|+++|++|+++|++++++++.+. ++++++.++|.+++|..-...+ ...+ .++++++++++++++|++++||
T Consensus 104 q~~~EaiH~e~Y~~~le~l~~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~~-------~~~~~~~~~~~a~v~~~~~iEG 175 (311)
T PRK08326 104 FAFEEAKHTEAFRRWFDAVGVTE-DLSVYTDDNPSYRQIFYEELPAALNRL-------STDPSPENQVRASVTYNHVVEG 175 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH-HHHHHHhcCHHHHHHHHHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776 4677778889999985322211 1121 2345678899999988999999
Q ss_pred HHHHHHHHHH-HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8867 202 LFFYVGFVQI-LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280 (355)
Q Consensus 202 i~f~sgF~~~-~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~ 280 (355)
|+|||||+++ ++++++|+|||++++|++|.|||++|+.||+.+++.+++|+|+.++ ++++.+.+++++||++ ++|+.
T Consensus 176 i~f~sgF~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~-~~~~~i~el~~~av~~-~~~~~ 253 (311)
T PRK08326 176 VLAETGYYAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNWD-VFEERMNELLPLALGL-IDEIF 253 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhH-HHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999997 6999999999999999999999999999999999999999998877 5899999999999995 89999
Q ss_pred hhcCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q psy8867 281 DTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIF 316 (355)
Q Consensus 281 ~~~~~~i~-Gl~~~~~~~yv~y~an~~L~~lG~~~~f 316 (355)
++++.+++ |+|++++++||+|+||+||++||+..-=
T Consensus 254 ~~~~~~i~~Gl~~~~~~~Yi~y~an~RL~~iG~~~~~ 290 (311)
T PRK08326 254 ALYGDQIPFELSNDEFVDYAADRGQRRLGAIERARGR 290 (311)
T ss_pred HhccCcccCCCCHHHHHHHHHHHHHHHHHHhCccccC
Confidence 99988886 9999999999999999999999998643
No 15
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=100.00 E-value=6.1e-52 Score=390.72 Aligned_cols=251 Identities=18% Similarity=0.220 Sum_probs=206.7
Q ss_pred HHHHHHHHhhcC-CCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHh--hcCChHHHHHHH
Q psy8867 44 WAWDRYLSSCAN-HWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTY--RHITAPECRQYL 120 (355)
Q Consensus 44 ~~~~ly~k~~~~-fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~--~~~~~~E~~~~~ 120 (355)
-.+++|++++++ ||+|+|||+++|++||+ +||+.||++++++|++|+.+|++|++++.+.+. ..++.||+++|+
T Consensus 8 ~~~~ly~~~~~~~~W~~~eid~s~D~~~w~---~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l 84 (280)
T cd07911 8 LPMKLFEKGKRKGFWNPADIDFSQDREDWE---QLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYL 84 (280)
T ss_pred hhHHHHHHHHccCCCCHHHcCccchHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 456899999999 99999999999999999 999999999999999999999999999987665 567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhh----CHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHH
Q psy8867 121 LRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE----IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196 (355)
Q Consensus 121 ~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~----~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~ 196 (355)
++|+++|+||+++|++++++++.+++ ++.+.+ .+.++++...+. .+. +.+++.+++++.+.|+
T Consensus 85 ~~q~~~EaiH~esYs~~l~tl~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~a~~~~~ 151 (280)
T cd07911 85 TQFLFEEAKHTDFFRRWLDAVGVSDD--LSDLHTAVYREPFYEALPYAEL----RLY-------LDASPAAQVRASVTYN 151 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcc--hhhhhhhHHHHHHHHHHHHHHH----hhc-------CCCChHHHHHHHHHHH
Confidence 99999999999999999999987754 333332 222222222222 211 2345667888777778
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHH
Q psy8867 197 CIMEGLFFYVGFVQIL-ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275 (355)
Q Consensus 197 ~~lEgi~f~sgF~~~~-~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E 275 (355)
.++||++|||||+++. +++++|+|||++++|++|.|||++|+.||+.+++++++|+|+.++ + +.+.++++++.|
T Consensus 152 ~~lEGilf~sgF~~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~-~----~~e~~~~l~~~a 226 (280)
T cd07911 152 MIVEGVLAETGYYAWRTICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWD-V----FEERMNELVPHA 226 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChhHHH-H----HHHHHHHHHHHH
Confidence 8999999999999987 799999999999999999999999999999999999999886443 3 444555555555
Q ss_pred HHHHHhh---cCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q psy8867 276 YYYAEDT---MPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315 (355)
Q Consensus 276 ~~~~~~~---~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~ 315 (355)
.++.+++ .+..++|++.+++++|++|+||+||.+||++|-
T Consensus 227 v~~~~~~~~~~~~~~~g~~~~~~~~Y~~~~a~~rL~~lg~~~~ 269 (280)
T cd07911 227 LGLIDEIFELYDEMPFGLDPDELMQYAVDQFQRRLGYIERARG 269 (280)
T ss_pred HHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 5555555 444589999999999999999999999999985
No 16
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=98.56 E-value=4.9e-06 Score=79.46 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=104.8
Q ss_pred cCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHH-----HhhhHhh----hchHHhHhhcCChHHHHHHHHHHH
Q psy8867 54 ANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFS-----TADSLAA----NNIVLGTYRHITAPECRQYLLRQA 124 (355)
Q Consensus 54 ~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~-----~~Ds~v~----~~l~~~l~~~~~~~E~~~~~~~q~ 124 (355)
...|.|.+...--+-.-|. .||+++|..+.+--.... .++..+. +.+.....+.-.....+.+...++
T Consensus 46 ~~~~~p~~~~pl~gtp~~~---~l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 122 (304)
T PF11583_consen 46 DRPWLPPELLPLYGTPLWE---RLSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEI 122 (304)
T ss_dssp TS-SS-GGGSTTTT-HHHH---TS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHH
T ss_pred cccCCCcccCccCCCHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5688888877777788999 999999887766544333 4444443 222222223345667888888999
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHH
Q psy8867 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204 (355)
Q Consensus 125 ~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f 204 (355)
.+|+.|+.+|.++++.++.... ......-+........+...... .. ......++.++.|.+.-
T Consensus 123 ~DE~rH~~mf~~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~~~~~-------------~~-~~~~~~~~~lv~Ee~i~ 186 (304)
T PF11583_consen 123 ADEARHSLMFARAINRTGRRRG--LAPLPPPYPPRRLLRRLARLLPP-------------WE-RGLLFFAFALVAEEIID 186 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------S--HHHHHHHHHHHTS-SH-------------HH-HHHHHHHHHHHHHHSBH
T ss_pred HHHHHHHHHHHHHHHHHhhhcC--cccCCCCCchHHHHHHHHHhccc-------------cc-chHHHHHHHHHHHHHHH
Confidence 9999999999999998871100 00011112233333333322211 11 11112233566777643
Q ss_pred HHHHHHHHHHh-hcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc
Q psy8867 205 YVGFVQILALG-RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255 (355)
Q Consensus 205 ~sgF~~~~~l~-~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~ 255 (355)
.+...+. ..++-|-+.++++...+||++|+.|+..+++....+.+..
T Consensus 187 ----~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~~ 234 (304)
T PF11583_consen 187 ----AYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSPA 234 (304)
T ss_dssp ----HHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH
T ss_pred ----HHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 1122233 3457788999999999999999999999999999877643
No 17
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=98.09 E-value=0.0019 Score=65.04 Aligned_cols=219 Identities=16% Similarity=0.191 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHH
Q psy8867 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL-----DELEIFN 150 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~-----~~~e~f~ 150 (355)
.+++.-.++++..++.+..++-...... ..+.+..+.++++..+.+|+..|.+|+..=.+....+.. +.. -.
T Consensus 70 ~~dp~W~~~Lk~~~~a~~~~Ey~a~~~~-a~~~R~a~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~--~~ 146 (465)
T cd01057 70 KVDPRWVEAMKLFLGAITPGEYAAVRGM-AMLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWA--QK 146 (465)
T ss_pred cCCHHHHHHHHHHhccccHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChH--HH
Confidence 7999999999999999999995555444 357789999999999999999999999987777666543 212 13
Q ss_pred HHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccchHHHHHH
Q psy8867 151 AYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR-QNKMIGSSELYQY 229 (355)
Q Consensus 151 ~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~-~g~l~g~~~~i~~ 229 (355)
.+.++|..+.--..+.+.+.. ....+.+++.+++.|.++=-.-|..+-..+. +|- .-+..++.-
T Consensus 147 ~~~~~~~~~~~R~~~ed~~~t--------------~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD-~~tptv~~S 211 (465)
T cd01057 147 AFHGNWYAGAAKRFFFDGFIT--------------GDAVEAALALQFVFETAFTNLLFVALASDAAANGD-YATPTVFLS 211 (465)
T ss_pred HHhhCcHHHHHHHHHHHHHhc--------------CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCC-hhhHHHHHH
Confidence 444666654422222221110 1146667777888888654333333333332 342 345666777
Q ss_pred HHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCCCCCHHHHHHHHHHHHHH
Q psy8867 230 ILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY----AEDTMPKGILGLNVKTFKSYLRFIANC 305 (355)
Q Consensus 230 I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~----~~~~~~~~i~Gl~~~~~~~yv~y~an~ 305 (355)
+..||++|...|..++. ++..+|+ ..+.++.++..-+-.+...=..+ .+|.-+...... ++.+..||.-..-.
T Consensus 212 ~QsDe~Rh~~~g~~ll~-~l~~Dp~-N~~~lq~wld~w~wr~~~a~~~l~g~~~dY~~~~r~~s~-~e~~~~wi~~~~~~ 288 (465)
T cd01057 212 IQSDEARHMANGYPTLV-LLENDPD-NVPLLQRDLDKAFWRQHRLFDALVGMLMDYGTPKRVMSW-KEFWEEWIEEDFGS 288 (465)
T ss_pred HHHHHHHHHHhHHHHHH-HHHcCcc-cHHHHHHHHHHHHHHHHHHHHhhhhHHHHccCCcCcccH-HHHHHHHHHHHHHH
Confidence 78999999999999994 4444443 23345566655555555432222 222222222222 35556655555556
Q ss_pred HHHHC---CCCCC
Q psy8867 306 RMKQI---GIKQI 315 (355)
Q Consensus 306 ~L~~l---G~~~~ 315 (355)
.+..| |++++
T Consensus 289 ~~~~L~~~Gl~~P 301 (465)
T cd01057 289 YFKDLEKYGLKKP 301 (465)
T ss_pred HHHHHHHcCCCCC
Confidence 66777 99764
No 18
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=97.69 E-value=0.014 Score=54.72 Aligned_cols=204 Identities=16% Similarity=0.175 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CHHHHHHHH
Q psy8867 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-GL--DELEIFNAY 152 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l-~~--~~~e~f~~~ 152 (355)
.+++..|..+.+.+..++-.+-+.+..+.. .....|..|.+..++..+-+|.-|++.+-.++..+ +. +++++ ...
T Consensus 9 ~~~~~~~~~L~~~l~~laD~elil~~r~~e-w~~~AP~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d~l-a~~ 86 (263)
T PF05138_consen 9 EMPEEYREALIRYLLRLADDELILGQRLSE-WCGHAPSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDEDDL-AFL 86 (263)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHH-HHH
T ss_pred hhhhhhHHHHHHHHHHHhChHHHhhhHHhH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHH-Hhh
Confidence 799999999999999997777666666654 56788999999999999999999999999999999 33 33332 111
Q ss_pred hhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccchHHHHHHH
Q psy8867 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL--ALGRQNKMIGSSELYQYI 230 (355)
Q Consensus 153 ~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~--~l~~~g~l~g~~~~i~~I 230 (355)
+..... |+ .. +.. .| ..+|...++ ++ +||..+..+. .| .+.-.+-++.+.+.|
T Consensus 87 R~~~~~--rn------~~-l~e-------~p-~~dwa~~v~-r~------~l~d~~~~~~l~~l-~~ssy~pla~~a~k~ 141 (263)
T PF05138_consen 87 RDAREF--RN------LL-LFE-------QP-NGDWADTVA-RQ------FLFDRAGKVLLEAL-ADSSYEPLAAIAAKI 141 (263)
T ss_dssp HHTTCS---S------SG-GGG-------S----SHHHHHH-HH------HHHHHHHHHHHHHH-TT-SBHHHHHHHHHH
T ss_pred cccchh--hh------hh-hhc-------cC-CCCHHHHHH-HH------HHHHHHHHHHHHHH-HcCCcHHHHHHHHHH
Confidence 110000 10 00 000 00 122443333 24 3444455443 44 456678899999999
Q ss_pred HhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CCCCCCCHHHHHHHHHH
Q psy8867 231 LRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMP---------KGILGLNVKTFKSYLRF 301 (355)
Q Consensus 231 ~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~---------~~i~Gl~~~~~~~yv~y 301 (355)
.++|..|..++...+++|..-. ++-++.+.+|++.=-.++..+|. .++.+.+.+.+.+--.-
T Consensus 142 ~kEe~yH~~h~~~w~~rL~~gt---------~es~~r~q~Al~~~wp~~~elF~~~~~~~~l~~~~~~~~~~~lr~~w~~ 212 (263)
T PF05138_consen 142 LKEEAYHLRHGEDWLRRLGDGT---------EESRERMQAALDRLWPYTLELFGPDDSEEALAWGGRAPDNEELRQRWLA 212 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC---------HHHHHHHHHHHHHHHHHHHHCC-S-HCHHHHHCTTSSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999998432 22333344444433333444443 24677888888766666
Q ss_pred HHHHHHHHCCCCCC
Q psy8867 302 IANCRMKQIGIKQI 315 (355)
Q Consensus 302 ~an~~L~~lG~~~~ 315 (355)
.....|..+|++-+
T Consensus 213 ~v~~~l~~~gL~~P 226 (263)
T PF05138_consen 213 EVVPVLEEAGLEVP 226 (263)
T ss_dssp HHHHHHHHTT---S
T ss_pred HHHHHHHHcCCCCC
Confidence 78889999998765
No 19
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.67 E-value=0.031 Score=52.87 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q psy8867 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~ 155 (355)
.|++.-|..+.+.+..++-.+-+.+.-.. ......|..|.+..++..+.+|.=|++.+-.+..+|+.+.++....+...
T Consensus 16 ~mp~~yr~~L~r~l~~~AdsEli~a~r~~-eW~~~AP~LeediAl~niaqDelGHar~ly~~a~~LG~~r~ed~~a~~r~ 94 (289)
T TIGR02156 16 WMPAAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSREELLDALLTG 94 (289)
T ss_pred cCCHHHHHHHHHHHHHHhhHHHHhccccc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcC
Confidence 68898999999999999876655555443 35578899999999999999999999999999999987765544433332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccchHHHHHHHHhc
Q psy8867 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL--ALGRQNKMIGSSELYQYILRD 233 (355)
Q Consensus 156 p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~--~l~~~g~l~g~~~~i~~I~RD 233 (355)
+ .++.+ .++ + | ..+|...++- + +||.++++.. .|. +.--+-++.+...|++.
T Consensus 95 ~-----~~f~n-l~e-~----------P-~~dwA~tivr-~------~l~D~~~~~~~~~L~-~SSy~plA~ia~Ki~KE 148 (289)
T TIGR02156 95 K-----AKYSS-IFN-Y----------P-TLTWADIGVI-G------WLVDGAAIMNQTPLC-RCSYGPYSRAMVRICKE 148 (289)
T ss_pred h-----Hhhcc-chh-C----------C-CCCHHHHHHH-H------HHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHH
Confidence 2 22211 111 1 1 1124433332 2 4566677554 333 45678899999999999
Q ss_pred hhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------------CCCCCCHHHHHHHH
Q psy8867 234 ESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPK--------------GILGLNVKTFKSYL 299 (355)
Q Consensus 234 E~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~--------------~i~Gl~~~~~~~yv 299 (355)
|+.|...+...+.+|..-. ++-++.+++||+.=--++..+|.. ||...+.+++.+--
T Consensus 149 e~yH~rh~~~wl~rL~~GT---------~esr~r~Q~Ald~~Wp~~~emFg~~d~e~~~~~~~~~~Gi~~~~n~eLR~~w 219 (289)
T TIGR02156 149 ESFHQRQGYEIMLTLARGT---------QEQRQMAQDALNRWWWPSLMMFGPHDADSPNSGQSTKWKIKRNSNDELRQKF 219 (289)
T ss_pred HHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999999999997521 223344445554444444444432 33334677777666
Q ss_pred HHHHHHHHHHCCCCCC
Q psy8867 300 RFIANCRMKQIGIKQI 315 (355)
Q Consensus 300 ~y~an~~L~~lG~~~~ 315 (355)
.-.....|..+|++-+
T Consensus 220 ~~~v~~~l~~agL~~P 235 (289)
T TIGR02156 220 IDATVPQLESLGLTIP 235 (289)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 6677788999998764
No 20
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=97.57 E-value=0.0034 Score=59.55 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=103.6
Q ss_pred hcCCCCCccccccc-------chhhhc-CCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCC-----hHHHHHH
Q psy8867 53 CANHWMPQEINMQR-------DIELWK-NPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT-----APECRQY 119 (355)
Q Consensus 53 ~~~fW~p~Ei~l~~-------D~~dw~-~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~-----~~E~~~~ 119 (355)
...-|.|+++=.-. +.++|+ ..++||+..+.++...+--=-.+.+.+. .+...++ .++...+
T Consensus 24 ~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~~-----~L~~~f~~~~~~~~~w~~w 98 (297)
T cd01050 24 VEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYHS-----MLNRLFGLDDESPTAWARW 98 (297)
T ss_pred HhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHHH-----HHHHHcCcccccccHHHHH
Confidence 44678887765444 556665 2236888866655543321112222221 2333332 2789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHH
Q psy8867 120 LLRQAFEEAIHTHAYQYIVESLGL-DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198 (355)
Q Consensus 120 ~~~q~~~E~iH~~sYs~il~~l~~-~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~ 198 (355)
...+.++|+.|+.+-..++..-+. ++.++. + .+...+.+- |+.++.. ..+..+ +|.++
T Consensus 99 ~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le------~---~~~~~~~~G--------~~~~~~~---~~~~~~-~y~~f 157 (297)
T cd01050 99 VRRWTAEENRHGDLLNKYLYLTGRVDPRALE------R---TRQYLIGSG--------FDPGTDN---SPYRGF-VYTSF 157 (297)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCCCHHHHH------H---HHHHHHhCC--------CCCCCcc---cHHHHH-HHHHH
Confidence 999999999999999999976543 443321 1 111112211 2222221 123334 34666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8867 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254 (355)
Q Consensus 199 lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~ 254 (355)
-|..-+ +++.-+..+.+. -=|-++++...|++||.+|..|...+++.++.-.|+
T Consensus 158 qE~aT~-v~y~nl~~~a~~-gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~ 211 (297)
T cd01050 158 QELATR-ISHRNTARLAGA-GDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPD 211 (297)
T ss_pred HHHHHH-HHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 676442 233333333322 368899999999999999999999999999987774
No 21
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=97.55 E-value=0.06 Score=51.50 Aligned_cols=217 Identities=13% Similarity=0.057 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhcCCCCCcc--cccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHH
Q psy8867 43 NWAWDRYLSSCANHWMPQE--INMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYL 120 (355)
Q Consensus 43 ~~~~~ly~k~~~~fW~p~E--i~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~ 120 (355)
...+.-|-++++.-..--+ ++.-.....+. .|++.-++.+++.++.+..++--...+. ..+....+.++++.++
T Consensus 60 q~~y~~Yv~~qae~e~~~~~~~~~~~~~~~~~---~ld~~w~~~l~~~l~p~~~~E~ga~~~~-a~~~r~~~~~~i~n~~ 135 (304)
T cd01058 60 QFWYRTYVQMRAEQERYVERLFEFAEKRGLAE---ALSPEWREFLARYLGPLRHVEHGLQMAN-AYVAQYAPSTTITNAA 135 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh---hCCHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHhhcchHHHHHHH
Confidence 3455555555554333322 22223334566 7999999999999999998885444333 3467888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC---H--HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHH
Q psy8867 121 LRQAFEEAIHTHAYQYIVESLGLD---E--LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195 (355)
Q Consensus 121 ~~q~~~E~iH~~sYs~il~~l~~~---~--~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f 195 (355)
.+|++.|..|+.--+++...+... . +.--..+.++|.-+- +.+.+++... ...+.+.+++.
T Consensus 136 ~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~dp~Wq~----~R~~~E~~~~----------~~Dw~E~~va~ 201 (304)
T cd01058 136 AFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQG----LRELVEKLLV----------TYDWGEAFVAQ 201 (304)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcCchhHH----HHHHHHHHHh----------hccHHHHHHHH
Confidence 999999999999988887666432 1 112234566776542 2223322210 01256777787
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHH
Q psy8867 196 ACIMEGLFFYVGFVQIL-ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274 (355)
Q Consensus 196 ~~~lEgi~f~sgF~~~~-~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~ 274 (355)
++++|+++----|.-+- ..+.+| =.-+..++..+..||++|...+..+++.+..+.|+ ..+-++.|+-.-+..+...
T Consensus 202 nlv~e~l~~~l~~~~~~~~Aa~nG-D~~t~~l~~s~q~d~~Rh~~~~~alvk~l~~~~~~-N~~~lq~w~~~w~~ra~~A 279 (304)
T cd01058 202 NLVFDPLVGELVRRELDRLAASNG-DTLTPLLTEFMLDDAQRHRRWTDALVKTAAEDSPH-NRALLQGWLEKWRPRALAA 279 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHccChh-HHHHHHHHHHHHHHHHHHH
Confidence 88899976433333322 222344 24577888999999999999999999988876332 2333566666666666655
Q ss_pred HHHHH
Q psy8867 275 EYYYA 279 (355)
Q Consensus 275 E~~~~ 279 (355)
=..+.
T Consensus 280 ~~~~~ 284 (304)
T cd01058 280 LAALA 284 (304)
T ss_pred HHHHH
Confidence 44443
No 22
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=97.54 E-value=0.035 Score=53.01 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q psy8867 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~ 155 (355)
.|++.-|..+.+.+..++-.+-+.+.-+. ......|..|.+..++..+.+|.=|+..+-.+..+|+.+.++....+...
T Consensus 34 ~mp~~yr~~L~~~l~~laDseLi~a~r~~-eWi~~AP~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~e~~~a~~r~ 112 (314)
T PRK13778 34 WMPDAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELIDDLLSG 112 (314)
T ss_pred ccCHHHHHHHHHHHHHHhhHHHHhcchhc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcc
Confidence 68888899999999999776655555444 35578899999999999999999999999999999988766544433332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccchHHHHHHHHhc
Q psy8867 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL--ALGRQNKMIGSSELYQYILRD 233 (355)
Q Consensus 156 p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~--~l~~~g~l~g~~~~i~~I~RD 233 (355)
+ .++.. .++ .| ..+|...++- + +|+.++++.. .|. +.-.+-++.+...|++.
T Consensus 113 ~-----~~f~n-~fe-----------~P-~~dwAdtvvr-~------~L~D~a~~~~~~~L~-~sSy~plA~~a~Ki~KE 166 (314)
T PRK13778 113 K-----AKYSS-IFN-----------YP-TLTWADVGVI-G------WLVDGAAIMNQVPLC-RCSYGPYARAMVRICKE 166 (314)
T ss_pred h-----HHhcc-ccc-----------CC-CCCHHHHHHH-H------HHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHH
Confidence 2 22211 111 11 1124433332 2 4555666554 343 45578899999999999
Q ss_pred hhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCCCCCCHHHHHHHH
Q psy8867 234 ESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMP--------------KGILGLNVKTFKSYL 299 (355)
Q Consensus 234 E~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~--------------~~i~Gl~~~~~~~yv 299 (355)
|+.|...+...+..|..-. ++-++++++||+.=--++-.+|. -+|...+.+++.+=-
T Consensus 167 e~yH~rhg~~wl~rL~~GT---------~esr~r~Q~Ald~~Wp~~~emFg~~d~~s~~~~~~~~~Gik~~~n~eLR~~w 237 (314)
T PRK13778 167 ESFHQRQGEEILLALARGT---------PAQKQMAQDALNRWWWPALMMFGPPDDDSPHSAQSMAWKIKRFSNDELRQKF 237 (314)
T ss_pred HHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHHHHHhCCCCCCHHHHHHHH
Confidence 9999999999999998532 22334555555544444444443 233346677776655
Q ss_pred HHHHHHHHHHCCCCCC
Q psy8867 300 RFIANCRMKQIGIKQI 315 (355)
Q Consensus 300 ~y~an~~L~~lG~~~~ 315 (355)
.-.+...|..+|++-+
T Consensus 238 ~~~v~~~l~~~gL~vP 253 (314)
T PRK13778 238 VDATVPQAEVLGLTLP 253 (314)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 5567778899998754
No 23
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=97.54 E-value=0.0035 Score=57.62 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHH--HHHH
Q psy8867 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL---DEL--EIFN 150 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~---~~~--e~f~ 150 (355)
.|++.-++.++..++.+...+-....+- ..+.+..+.++++.+..+|++.|..|..-=.+++..+.. +.+ . -.
T Consensus 66 ~l~~~w~~~l~~~~~~~~~~E~ga~~~~-a~~~r~~~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~-k~ 143 (233)
T PF02332_consen 66 ALDPRWVEFLKRHLGPLRHAEYGAQMAS-AYIARFAPGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAA-KE 143 (233)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT-HH
T ss_pred cCCHHHHHHHHHHcCCcchHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH-HH
Confidence 5699999999999999999985554433 357889999999999999999999999999988887732 211 1 34
Q ss_pred HHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCccchHHHHHH
Q psy8867 151 AYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG-RQNKMIGSSELYQY 229 (355)
Q Consensus 151 ~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~-~~g~l~g~~~~i~~ 229 (355)
.+.++|..+---..+ +++.. ...+.+..++.++++|+++----|.-+-..+ .+| =..+..++..
T Consensus 144 ~w~~~p~wq~~R~~v----E~~~~----------~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nG-D~~~~~l~~~ 208 (233)
T PF02332_consen 144 AWLNDPAWQPLRRLV----EDLLV----------TYDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANG-DFLTPTLTSS 208 (233)
T ss_dssp HHHHSHHHHHHHHHH----HHHTT----------SSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHH
T ss_pred HHhhCchhHHHHHHH----HHHHh----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHH
Confidence 567778765433322 32110 1126777888788889987654444443333 333 3567888899
Q ss_pred HHhchhhHHhHHHHHHHHHHhhCC
Q psy8867 230 ILRDESMHCNFGIDLINTIKMENP 253 (355)
Q Consensus 230 I~RDE~~H~~~~~~l~~~l~~e~~ 253 (355)
+..||++|...+..+++.+.++.|
T Consensus 209 ~q~d~~r~~~~~~al~~~~~~~~~ 232 (233)
T PF02332_consen 209 IQSDEARHMRWGDALFKMALEDDP 232 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999987653
No 24
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=97.52 E-value=0.052 Score=47.26 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHH
Q psy8867 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE-----IFNAY 152 (355)
Q Consensus 78 s~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e-----~f~~~ 152 (355)
|+.-|+++.|+=+--..++...-+|+. .+...+|..... +..-+-||+.|.+.|.-.=+.+...++- .|...
T Consensus 4 s~~YkdAYSRINaIVIEGEqeA~~Nyi-~la~llP~~~de--L~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 80 (219)
T PF11266_consen 4 SETYKDAYSRINAIVIEGEQEAHDNYI-SLAELLPDQKDE--LIRLAKMENRHKKGFQACGRNLGVTPDMPFAKEFFSPL 80 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-GGGHHH--HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhheeeeechHHHHHhHH-HHHHHCcccHHH--HHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 567789999999999999988888886 477777765444 6688899999999999999999876542 22222
Q ss_pred hhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHh
Q psy8867 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILR 232 (355)
Q Consensus 153 ~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~R 232 (355)
+.+ . +++ .. .-+...+++.=+.++|. +.-++|.+. +.- .=|=-.++-.-+.+
T Consensus 81 h~n--F-q~A------~~--------------~gk~~tCLlIQaliIE~-FAIaAYniY--IpV--AD~FARkITegVVk 132 (219)
T PF11266_consen 81 HGN--F-QRA------AA--------------EGKVVTCLLIQALIIEC-FAIAAYNIY--IPV--ADPFARKITEGVVK 132 (219)
T ss_dssp HHH--H-HHH------HH--------------TT-HHHHHHHHHTHHHH-HHHHHHHHH--GGG--S-HHHHHHHHHHHH
T ss_pred HHH--H-HHH------HH--------------cCCeeehHHHHHHHHHH-HHHHHhhhc--eec--ccHHHHHHHHHHHh
Confidence 111 0 000 00 01123333332445554 222333322 211 11334567788999
Q ss_pred chhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCHHHH-HHHHHHHHHHHHHHC
Q psy8867 233 DESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPK-GILGLNVKTF-KSYLRFIANCRMKQI 310 (355)
Q Consensus 233 DE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~-~i~Gl~~~~~-~~yv~y~an~~L~~l 310 (355)
||..|..||-.-++.-.. ..++++.+.-++...+-.+.++..-.+ .++||.++.+ .+|+- .-...|.++
T Consensus 133 DEy~HLNfGe~WLk~~f~--------~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lvedFmi-~Y~eAL~~I 203 (219)
T PF11266_consen 133 DEYTHLNFGEEWLKANFE--------QSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVEDFMI-AYGEALSNI 203 (219)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHhcchHHHHHHHHHH--------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHc
Confidence 999999999875544432 334555444445444444444443333 3789988665 55554 445678888
Q ss_pred CCCC
Q psy8867 311 GIKQ 314 (355)
Q Consensus 311 G~~~ 314 (355)
|+..
T Consensus 204 Gf~t 207 (219)
T PF11266_consen 204 GFTT 207 (219)
T ss_dssp T--H
T ss_pred CCcH
Confidence 8753
No 25
>PRK14983 aldehyde decarbonylase; Provisional
Probab=97.20 E-value=0.016 Score=50.88 Aligned_cols=197 Identities=17% Similarity=0.252 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHH
Q psy8867 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL-----EIFNAY 152 (355)
Q Consensus 78 s~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~-----e~f~~~ 152 (355)
|+.-|++|.|+=+--..++...-+|+. .+...+|..... +..-+-||..|.+.|.-.=+.++..++ +.|...
T Consensus 14 s~~YkdAYSRINaIVIEGEqeA~dNyi-~la~llP~~~dE--L~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 90 (231)
T PRK14983 14 SETYKDAYSRINAIVIEGEQEAHDNYI-SLATLLPEHAEE--LTRLAKMEMRHKKGFTACGRNLGVTPDMPFAKEFFSPL 90 (231)
T ss_pred cHHHHHHHHHhceeeEeccHHHHHhHH-HHHHHCcccHHH--HHHHHHHHHHHHhHHHHHcccCcCCCCcHHHHHHHHHH
Confidence 466788899988888888877778886 477777665444 678889999999999988888875543 223222
Q ss_pred hhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHh
Q psy8867 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILR 232 (355)
Q Consensus 153 ~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~R 232 (355)
+.+ . .++ .. ++ +...+++.=+.++|. +.-+.|.+..=.+ =|=-.++-.-+.+
T Consensus 91 h~n--F-q~A------~~------------eg--kv~TCLlIQaLiIE~-FAIaAYniYIpVA----D~FARkITegVVk 142 (231)
T PRK14983 91 HGN--F-QKA------AA------------EG--KVVTCLLIQALIIEA-FAIAAYNIYIPVA----DPFARKITEGVVK 142 (231)
T ss_pred HHH--H-HHH------Hh------------cC--CeeehHHHHHHHHHH-HHHHHHhhccccc----cHHHHHHHHhHHh
Confidence 211 0 010 00 00 112233332445564 2223333221111 1334567788999
Q ss_pred chhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCHHHH-HHHHHHHHHHHHHHC
Q psy8867 233 DESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPK-GILGLNVKTF-KSYLRFIANCRMKQI 310 (355)
Q Consensus 233 DE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~-~i~Gl~~~~~-~~yv~y~an~~L~~l 310 (355)
||..|..||-.-++.-.. ..++++.+.-++...+-.+.++..-.+ .++||.++.+ .+|+- .-...|.++
T Consensus 143 DEY~HLN~Ge~WLk~~f~--------~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi-~Y~eAL~~I 213 (231)
T PRK14983 143 DEYLHLNFGEEWLKANFE--------TSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVEDFMI-AYGEALSNI 213 (231)
T ss_pred hHHHhcchHHHHHHHHHH--------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHc
Confidence 999999999875443332 334444444444444444444444333 3789988665 55554 445678889
Q ss_pred CCCC
Q psy8867 311 GIKQ 314 (355)
Q Consensus 311 G~~~ 314 (355)
|+..
T Consensus 214 Gf~t 217 (231)
T PRK14983 214 GFST 217 (231)
T ss_pred CCcH
Confidence 9864
No 26
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=97.02 E-value=0.067 Score=51.44 Aligned_cols=174 Identities=16% Similarity=0.191 Sum_probs=91.2
Q ss_pred cCCCCCcccccccc-------hhhhcC-CCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCC--------hHHHH
Q psy8867 54 ANHWMPQEINMQRD-------IELWKN-PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT--------APECR 117 (355)
Q Consensus 54 ~~fW~p~Ei~l~~D-------~~dw~~-~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~--------~~E~~ 117 (355)
+.-|.|+++=.-.+ ..+|.. ..+||+.-+-++. +.+..=|.+-+ +-..+...++ ..+..
T Consensus 27 ~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv---~~llTEd~LPs--Y~~~l~~~~~~~~~~ga~~~~W~ 101 (330)
T PF03405_consen 27 EKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALV---GNLLTEDNLPS--YHRELATLFGVRDEDGASDSPWG 101 (330)
T ss_dssp GGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHH---HHHHHHHTHHH--HHHHHTTSTTT--SSSS--SHHH
T ss_pred hhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHH---HHHHhhhhhhH--HHHHHHhhcCccccCCCCCCcHH
Confidence 46899988754433 334530 1147776444333 22222232222 1112333333 34688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHH
Q psy8867 118 QYLLRQAFEEAIHTHAYQYIVESLG-LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196 (355)
Q Consensus 118 ~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~ 196 (355)
.+.+.+.++|+.|+.+-..++-.-+ .|+.++ +. .|...+.+-++ .+.. ......+ +|.
T Consensus 102 ~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~l-------E~--~r~~~i~~G~~--------~~~~---~~p~~~~-vYt 160 (330)
T PF03405_consen 102 RWVGRWTAEENRHGDALRDYLYVSGRVDPVAL-------ER--TRMYLITAGFD--------PGFE---SDPYLGF-VYT 160 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCC-------CH--CCHHHHHH------------S-T---THHHHHH-HHH
T ss_pred HHcccccccccccHHHHHHHHHHhCCCCHHHH-------HH--HHHHHHhcCCC--------ccCC---CChHHHH-HHH
Confidence 9999999999999999999885433 232210 10 11222222221 1111 1122223 345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8867 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254 (355)
Q Consensus 197 ~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~ 254 (355)
.+-|-.-+. ++.-+.-++++--=|-++++...|++||.+|..|...++..++...|+
T Consensus 161 sfQE~AT~v-sh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd 217 (330)
T PF03405_consen 161 SFQERATQV-SHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPD 217 (330)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHH-HHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcH
Confidence 555543322 222223333222358899999999999999999999999999988775
No 27
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=97.01 E-value=0.018 Score=45.65 Aligned_cols=111 Identities=20% Similarity=0.139 Sum_probs=70.1
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcch
Q psy8867 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~ 185 (355)
.+...+++++++.++..++.+|..|.+.+..++..++.++.... +. . ....... ...
T Consensus 19 ~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~------~~---~----~~~~~~~----------~~~ 75 (130)
T cd00657 19 QLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPP------AH---L----LAAYALP----------KTS 75 (130)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH------HH---H----HHhcccC----------CCc
Confidence 45566779999999999999999999999999999876542100 00 0 0011110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHH
Q psy8867 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244 (355)
Q Consensus 186 ~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l 244 (355)
.++...+.. ++..|.. ....|..+. +...-+.+.++++.+.+||..|..++...
T Consensus 76 ~~~~~~l~~-~~~~E~~-~~~~y~~~~---~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 76 DDPAEALRA-ALEVEAR-AIAAYRELI---EQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred cCHHHHHHH-HHHHHHH-HHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122233333 5667873 223333222 22226889999999999999999987654
No 28
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.29 Score=45.28 Aligned_cols=223 Identities=16% Similarity=0.150 Sum_probs=138.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHhh
Q psy8867 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-GLDELEIFNAYHE 154 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~ 154 (355)
.+|++-|+++.+.++.++-.+-+.+.-..+ -....|.-|.+..++....+|.-|..-+=++.++| |...++.+...++
T Consensus 11 ~~p~~~~~tLi~~i~~~ad~elv~~~r~~e-W~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~ 89 (265)
T COG3396 11 WMPEAYRRTLIRLISQLADSELVLALREGE-WLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRD 89 (265)
T ss_pred hCCHHHHHHHHHHHHHhcchHHHHhccCCc-ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhh
Confidence 689999999999999997766555544443 23577888999999999999999999999999999 7776555544433
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccchHHHHHHHHh
Q psy8867 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL--ALGRQNKMIGSSELYQYILR 232 (355)
Q Consensus 155 ~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~--~l~~~g~l~g~~~~i~~I~R 232 (355)
+.. |.+.+. ++ |. -++.-.+ ++. +|+-|++++. .|. +.-.+-++.+...|++
T Consensus 90 -g~~--k~n~~~----n~----------P~-~~Wadt~-~~~------fLvD~~~~~~l~~l~-~ssy~PlA~~a~k~~k 143 (265)
T COG3396 90 -GRH--KRNSLF----NL----------PT-GDWADTI-VRG------FLVDGAAIYQLEALA-DSSYGPLARAAQKICK 143 (265)
T ss_pred -hHH--HHHHHH----cC----------CC-ccHHHHH-HHH------HHHhHHHHHHHHHHH-hccchHHHHHHHHHHH
Confidence 211 111111 11 11 0222222 223 3444555553 333 4457889999999999
Q ss_pred chhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHH------HHHHHHhhcCCCCCCCC-HHHHHHHHHHHHHH
Q psy8867 233 DESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL------EYYYAEDTMPKGILGLN-VKTFKSYLRFIANC 305 (355)
Q Consensus 233 DE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~------E~~~~~~~~~~~i~Gl~-~~~~~~yv~y~an~ 305 (355)
-|..|..++...+..|.+..++. .+-+++.+.+....+++. +..-..+ .-+|--.+ .+.-.+|++ ..+.
T Consensus 144 Ee~fHl~~~~~~l~~l~~gT~~~-~~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~--~~gI~~~~n~~Lrq~~i~-~~~~ 219 (265)
T COG3396 144 EEEFHLRHGKTWLKRLANGTEES-RQMAQAALNRWWPRALEMFGPSASESELSAA--KWGIKVDPNDELRQAWIK-EVNE 219 (265)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHhCcccccchhHHH--HcCCCCCCHHHHHHHHHH-HHHH
Confidence 99999999999999998764321 112244444454444432 1111111 11233333 344456666 7788
Q ss_pred HHHHCCCCCC-----CCC-----CCCcchHHHhc
Q psy8867 306 RMKQIGIKQI-----FPY-----ERNPFPWMSEM 329 (355)
Q Consensus 306 ~L~~lG~~~~-----f~~-----~~nP~~w~~~~ 329 (355)
.|..+|+.-+ |.+ +..+-+|.+.+
T Consensus 220 ~l~~~gltvPd~~l~~n~~~g~h~~~~~~~l~~~ 253 (265)
T COG3396 220 ELRELGLTVPDPNLHYNGKRGHHTEHLGDWLAEM 253 (265)
T ss_pred HHHHhcCCCCccccccccccCCcccchhhHHHHH
Confidence 8999997643 111 34567887654
No 29
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=96.37 E-value=0.18 Score=46.82 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHH--HHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------HH
Q psy8867 77 LTEEERRLVKRNLG--FFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL------EI 148 (355)
Q Consensus 77 Ls~~Er~~~~~~l~--~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~------e~ 148 (355)
=|+.-|-.+.+.++ =+.+.|... . ....|.+..|.. -..=+...+.+|+.|-..+..-|+.+|.+-. -+
T Consensus 62 ~~~~~r~~llHaiAhIE~~AIdLa~-D-a~~RF~~~lP~~-f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gL 138 (253)
T PF04305_consen 62 GTPEGRAALLHAIAHIELNAIDLAL-D-AIYRFHPNLPRE-FYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGL 138 (253)
T ss_pred CChhhHHHHHHHhcchHHHHHHHHH-H-HHHHHhccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHH
Confidence 34455667777666 333333211 1 112332233333 2333448889999999999999999986521 12
Q ss_pred HHHHhhCH-HHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHH
Q psy8867 149 FNAYHEIK-SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELY 227 (355)
Q Consensus 149 f~~~~~~p-~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i 227 (355)
++...... .+..|+. .-..++|+--+=.+=.++--|.+.|-. .++.++
T Consensus 139 w~~~~~t~~dl~~R~A------------------------------~vp~~~EArGLD~~p~~~~k~~~~gD~-~sa~iL 187 (253)
T PF04305_consen 139 WEAAEQTAHDLLARMA------------------------------LVPRVLEARGLDVTPFIIEKFRSAGDE-ESAAIL 187 (253)
T ss_pred HHHHHHhccCHHHHHH------------------------------HHHHHHHhhCCCCCHHHHHHHHHCCCH-HHHHHH
Confidence 22222111 1222222 224456665554444455556555644 889999
Q ss_pred HHHHhchhhHHhHHHHHHHHHHhhC
Q psy8867 228 QYILRDESMHCNFGIDLINTIKMEN 252 (355)
Q Consensus 228 ~~I~RDE~~H~~~~~~l~~~l~~e~ 252 (355)
+.|.+||--|+.+|.+=|+.+++..
T Consensus 188 ~~I~~DEi~HV~~G~rWf~~~c~~~ 212 (253)
T PF04305_consen 188 EIILRDEIGHVAIGNRWFRYLCEQR 212 (253)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 9999999999999999999998753
No 30
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.59 E-value=0.47 Score=45.30 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=121.0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy8867 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT--APECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE 147 (355)
Q Consensus 70 dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~--~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e 147 (355)
+|. .|+++.|..+.--|-.=..++ .-|-.+-..+...+. +|++..+++..+-+|++|+-+-+..+..++..-+
T Consensus 72 ~~d---~l~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lD- 146 (355)
T PRK13654 72 DWD---HLDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLSLD- 146 (355)
T ss_pred chh---hCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccc-
Confidence 688 899999988776553322222 112223334556666 9999999999999999999999999988875422
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc--CCccchH
Q psy8867 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQ--NKMIGSS 224 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~--g~l~g~~ 224 (355)
...|.+.- -|.=+ .++ + .-+.. .+-|.|-. .=|..++ .|.++ ..+--+=
T Consensus 147 -------LgfLtk~k-----~YTfF-----------~Pk-f-IfYat--YLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF 198 (355)
T PRK13654 147 -------LGFLTKKK-----KYTFF-----------PPK-F-IFYAT--YLSEKIGY-WRYITIYRHLEKHPEHRFHPIF 198 (355)
T ss_pred -------chhhccCC-----ceeee-----------Ccc-e-eeehh--HhHhhhhH-HHHHHHHHHHHhCcccccCchH
Confidence 12222110 00000 000 0 00111 12344432 2333443 66664 3555566
Q ss_pred HHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH-HHHHHHHHHHHHHHHHHHHHHHhhc-C--CCCCCCCHHHHHHHHH
Q psy8867 225 ELYQYILRDESMHCNFGIDLINTIKMENPNLWTT-EFCKEIEQLFLKAIELEYYYAEDTM-P--KGILGLNVKTFKSYLR 300 (355)
Q Consensus 225 ~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~-~~~~~i~~l~~~ave~E~~~~~~~~-~--~~i~Gl~~~~~~~yv~ 300 (355)
+-.+-=+.||.+|+.+...++ +..|+++.. ..+=|++=.+..+... . |+.+.- + -+.+|+++.+....|-
T Consensus 199 ~~Fe~WCqDEnRHGd~F~~lm----raqP~ll~g~~~kLW~RFFLlsVfaT-m-yl~d~~R~~Fy~alGlD~~~yD~~Vi 272 (355)
T PRK13654 199 KFFENWCQDENRHGDFFALLM----RAQPKLLKGWVNRLWIRFFLLAVFAT-M-YLRDHERPDFYEALGLDAREYDQEVI 272 (355)
T ss_pred HHHHHHhcccchhHHHHHHHH----hcCchhhcchHHHHHHHHHHHHHHhh-e-eeecccchHHHHHhCCCHHHhhHHHH
Confidence 667778999999999987764 445665443 2334444433333211 0 000000 0 0358999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCc
Q psy8867 301 FIANCRMKQIGIKQIFPYERNP 322 (355)
Q Consensus 301 y~an~~L~~lG~~~~f~~~~nP 322 (355)
-..|..-.++ +|-+. +.+||
T Consensus 273 ~~Tne~s~rv-FP~~L-dvd~P 292 (355)
T PRK13654 273 RKTNETSARV-FPVVL-DVDDP 292 (355)
T ss_pred HHhhHHHHhh-CCeee-cCCCh
Confidence 8998877664 23333 45677
No 31
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.52 E-value=0.57 Score=44.59 Aligned_cols=212 Identities=16% Similarity=0.192 Sum_probs=119.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy8867 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHI--TAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE 147 (355)
Q Consensus 70 dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e 147 (355)
+|. .|+++.|..+..-|-.=..++ .-|--+-..+...+ .+|++..+++..+-+|++|+-+-+..+..++..-+
T Consensus 68 ~~d---~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lD- 142 (351)
T CHL00185 68 SWS---NLDEKTKSLFVEFLERSCTAE-FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSLD- 142 (351)
T ss_pred chh---hCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccc-
Confidence 688 899998888776553322222 11222333455667 45999999999999999999999999988875422
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc--CCccchH
Q psy8867 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQ--NKMIGSS 224 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~--g~l~g~~ 224 (355)
...|.+.- -|. --.++ + .-+.. .+-|.|-. .=+..++ .|.++ ..+--+=
T Consensus 143 -------LgfLtk~r-----kYT-----------fF~Pk-f-I~YAt--YLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF 194 (351)
T CHL00185 143 -------LGFLTKSR-----KYT-----------FFSPK-F-IFYAT--YLSEKIGY-WRYITIYRHLEKNPEYRIYPIF 194 (351)
T ss_pred -------chhhccCC-----cee-----------eeccc-c-eehhh--HHHhhhhh-hHHhHHHHHHHhCcccccchHH
Confidence 12222110 000 00000 0 00111 12354432 2333343 66664 3455555
Q ss_pred HHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH-HHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCHHHHHHHHH
Q psy8867 225 ELYQYILRDESMHCNFGIDLINTIKMENPNLWTT-EFCKEIEQLFLKAIELEYYYAEDTMPK---GILGLNVKTFKSYLR 300 (355)
Q Consensus 225 ~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~-~~~~~i~~l~~~ave~E~~~~~~~~~~---~i~Gl~~~~~~~yv~ 300 (355)
+-.+-=+.||.+|+.+...++ +..|+++.. ..+=|++=.+..+... =|+.+.-.. +.+|+++.+....|-
T Consensus 195 ~~FE~WCqDEnRHGdfF~alm----raqP~ll~g~~~kLW~RFFLlsVfaT--myl~d~~R~~Fy~alGld~~~yD~~Vi 268 (351)
T CHL00185 195 KFFESWCQDENRHGDFFAALL----KSQPHLLNGWKARLWCRFFLLSVFAT--MYLNDLQRSDFYAAIGLDARQFDMHVI 268 (351)
T ss_pred HHHHHHhcccchhHHHHHHHH----hcChhhhhhHHHHHHHHHHHHHHHHH--heehhcchHHHHHHhCCCHHHhhHHHH
Confidence 666777899999999987764 345655433 2233444333333211 011110000 358999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCc
Q psy8867 301 FIANCRMKQIGIKQIFPYERNP 322 (355)
Q Consensus 301 y~an~~L~~lG~~~~f~~~~nP 322 (355)
-..|..-.++ +|-+. +.+||
T Consensus 269 ~~Tn~~a~rv-FP~~L-dvd~P 288 (351)
T CHL00185 269 RKTNESAARL-FPVVL-DVDNP 288 (351)
T ss_pred HHhhHHHHhh-CCeee-cCCCH
Confidence 8998877654 22222 45777
No 32
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=95.39 E-value=0.92 Score=43.01 Aligned_cols=212 Identities=16% Similarity=0.168 Sum_probs=119.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy8867 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHI--TAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE 147 (355)
Q Consensus 70 dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e 147 (355)
+|. .|+++-|..+.--|-.=..++ .-|-.+-..+...+ ++|.+..++...+-+|++|+-+-+.-+..++..-+
T Consensus 62 ~~~---~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l~lD- 136 (337)
T TIGR02029 62 SWE---HIDGELRQAFIEFLERSCTSE-FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGLALD- 136 (337)
T ss_pred chh---hCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccc-
Confidence 477 799998887766553322222 11222333455666 77889999999999999999999999988875422
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc--CCccchH
Q psy8867 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQ--NKMIGSS 224 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~--g~l~g~~ 224 (355)
...|.+.- -|.=+ .++ + .-+.. .+-|.|-. .=+..++ .|.++ ..+--+=
T Consensus 137 -------LgfLtk~r-----~YTfF-----------~Pk-f-I~YAt--YLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF 188 (337)
T TIGR02029 137 -------LGFLTKTR-----KYTFF-----------RPK-F-IYYAT--YLSEKIGY-WRYITIYRHLEENPENQFYPIF 188 (337)
T ss_pred -------hhhhccCC-----ceeee-----------ccc-e-eehhh--HhHhhhhh-HHHHHHHHHHHhCcccccchHH
Confidence 12222110 00000 000 0 00111 12354432 2334443 66664 3555566
Q ss_pred HHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH-HHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCHHHHHHHHH
Q psy8867 225 ELYQYILRDESMHCNFGIDLINTIKMENPNLWTT-EFCKEIEQLFLKAIELEYYYAEDTMPK---GILGLNVKTFKSYLR 300 (355)
Q Consensus 225 ~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~-~~~~~i~~l~~~ave~E~~~~~~~~~~---~i~Gl~~~~~~~yv~ 300 (355)
+-.+-=+.||.+|+.+...++ +..|+++.. ..+=|++=.+..+... =|+.+.-.. +.+|+++.+....|-
T Consensus 189 ~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~g~~~kLW~RFFLLsVfaT--myl~d~~R~~Fy~alGld~~~yD~~Vi 262 (337)
T TIGR02029 189 KYFESWCQDENRHGDAFAALM----RSQPQLLNNWKAKLWSRFFLLSVYST--MYLRDHQRPGFYEALGLDATDFDLQVF 262 (337)
T ss_pred HHHHHHhcccchhHHHHHHHH----hcChhhhhhHHHHHHHHHHHHHHHHH--HhhhhcccHHHHHHhCCCHHHhhHHHH
Confidence 667777899999999987764 345665433 2333444333333321 111111100 368999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCc
Q psy8867 301 FIANCRMKQIGIKQIFPYERNP 322 (355)
Q Consensus 301 y~an~~L~~lG~~~~f~~~~nP 322 (355)
...|..-.++ +|-+. +.+||
T Consensus 263 ~~Tne~s~rv-FP~~L-dvd~P 282 (337)
T TIGR02029 263 RNTNETSGRI-FPMTL-NTEHP 282 (337)
T ss_pred HHhhHHHHhh-CCeee-cCCCH
Confidence 9998877664 22232 45777
No 33
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=95.19 E-value=0.72 Score=44.96 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHH
Q psy8867 116 CRQYLLRQAFEEAIHTHAYQYIVESLG-LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194 (355)
Q Consensus 116 ~~~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 194 (355)
...+...+.++|++|...-+.+|=.-+ .|+.+ +-+..+.+. ... |+.++. .+.+..+ +
T Consensus 157 W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~----------iE~t~q~li---~~G----~d~~~~---~~py~~~-v 215 (390)
T PLN00179 157 WARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQ----------IEKTIQYLI---GSG----MDPKTE---NNPYLGF-I 215 (390)
T ss_pred hhhhccccccccchHHHHHHHHHhhccCcCHHH----------HHHHHHHHH---hcC----CCCCCC---CCHHHHH-H
Confidence 556888999999999999888876444 23322 111122211 111 222222 1234444 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8867 195 FACIMEGLFFYVGFVQILALGR-QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254 (355)
Q Consensus 195 f~~~lEgi~f~sgF~~~~~l~~-~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~ 254 (355)
|..+-|..-+.| ..-.--+++ .| =|-++++...|+.||.+|..|..++...+..-.|+
T Consensus 216 YtSFQErAT~VS-H~NTarlA~~~g-Dp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd 274 (390)
T PLN00179 216 YTSFQERATFIS-HGNTARLAKEHG-DAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPD 274 (390)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHhcC-ChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCcc
Confidence 455556644321 111222333 23 47789999999999999999999999999988885
No 34
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.17 E-value=0.045 Score=52.04 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCC--ccchHHHHHHHHhchhhHHhHHHHHHH
Q psy8867 205 YVGFVQILALGRQNK--MIGSSELYQYILRDESMHCNFGIDLIN 246 (355)
Q Consensus 205 ~sgF~~~~~l~~~g~--l~g~~~~i~~I~RDE~~H~~~~~~l~~ 246 (355)
+|||...--++++.+ =|-++++..+++|||++|.+|.-.-++
T Consensus 96 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~ 139 (355)
T PRK13654 96 FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMK 139 (355)
T ss_pred hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 589998889998876 899999999999999999998554433
No 35
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=95.17 E-value=0.048 Score=51.45 Aligned_cols=42 Identities=31% Similarity=0.476 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcCCccc--hHHHHHHHHhchhhHHhHHHHHHH
Q psy8867 205 YVGFVQILALGRQNKMIG--SSELYQYILRDESMHCNFGIDLIN 246 (355)
Q Consensus 205 ~sgF~~~~~l~~~g~l~g--~~~~i~~I~RDE~~H~~~~~~l~~ 246 (355)
+|||...--++++.+=++ ++++..+++|||++|.+|.-.-++
T Consensus 86 FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~ 129 (337)
T TIGR02029 86 FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALG 129 (337)
T ss_pred hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 589998889998875555 999999999999999998554433
No 36
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=95.14 E-value=0.05 Score=50.99 Aligned_cols=42 Identities=29% Similarity=0.466 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcC--CccchHHHHHHHHhchhhHHhHHHHHHH
Q psy8867 205 YVGFVQILALGRQN--KMIGSSELYQYILRDESMHCNFGIDLIN 246 (355)
Q Consensus 205 ~sgF~~~~~l~~~g--~l~g~~~~i~~I~RDE~~H~~~~~~l~~ 246 (355)
+|||...--++++. .=|-++++..+++|||++|.+|.-.-++
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~ 119 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALS 119 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 58999888999886 4499999999999999999998554433
No 37
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=94.88 E-value=0.061 Score=51.01 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcC--CccchHHHHHHHHhchhhHHhHHHHHHH
Q psy8867 205 YVGFVQILALGRQN--KMIGSSELYQYILRDESMHCNFGIDLIN 246 (355)
Q Consensus 205 ~sgF~~~~~l~~~g--~l~g~~~~i~~I~RDE~~H~~~~~~l~~ 246 (355)
+|||...--++++. .=|-++++..+++|||++|.+|.-.-++
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (351)
T CHL00185 92 FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMS 135 (351)
T ss_pred hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 58999888998876 4599999999999999999998554433
No 38
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.84 E-value=0.89 Score=42.86 Aligned_cols=212 Identities=17% Similarity=0.186 Sum_probs=117.8
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy8867 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITA--PECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE 147 (355)
Q Consensus 70 dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~--~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e 147 (355)
+|. .++++.|..+.--|-.=..++ .-|-.+-..+...+.+ |++..++...+-+|++|+-+-+.-+..++..-+
T Consensus 52 ~~~---~~~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lD- 126 (323)
T cd01047 52 AAD---KIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLALD- 126 (323)
T ss_pred hhh---hCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccc-
Confidence 466 688888877766553222222 1122233345667754 999999999999999999999999988775422
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc--CCccchH
Q psy8867 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQ--NKMIGSS 224 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~--g~l~g~~ 224 (355)
...|.+.- -|.=+ .++ + .-+.. .+-|.|-. .=+..++ .|.++ ..+--+=
T Consensus 127 -------LgfLtk~r-----~YTfF-----------~Pk-f-I~Yat--YLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF 178 (323)
T cd01047 127 -------LGFLTKTR-----KYTFF-----------KPK-F-IFYAT--YLSEKIGY-WRYITIYRHLERNPENQFHPIF 178 (323)
T ss_pred -------hhhhccCC-----ceeee-----------Ccc-c-eeehh--Hhhhhhhh-HHHHHHHHHHHhCcccccchHH
Confidence 12222110 00000 000 0 00111 12344432 2333343 66664 3555566
Q ss_pred HHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH-HHHHHHHHHHHHHHHHHHHHHHhhc-CC--CCCCCCHHHHHHHHH
Q psy8867 225 ELYQYILRDESMHCNFGIDLINTIKMENPNLWTT-EFCKEIEQLFLKAIELEYYYAEDTM-PK--GILGLNVKTFKSYLR 300 (355)
Q Consensus 225 ~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~-~~~~~i~~l~~~ave~E~~~~~~~~-~~--~i~Gl~~~~~~~yv~ 300 (355)
+-.+-=+.||.+|+.+...++ +..|+++.. ..+=|+.=.+..+... . |+.+.- ++ +.+|+++.+....|-
T Consensus 179 ~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~~~~~kLW~RFFLlsVfaT-m-yl~d~~R~~Fy~alGld~~~yD~~Vi 252 (323)
T cd01047 179 KYFENWCQDENRHGDFFAALL----RAQPHLLNDGKNKLWIRFFLLSVYAT-M-YLNDHQRPDFYEALGLDTTEFDMHVI 252 (323)
T ss_pred HHHHHHhcccchhhHHHHHHH----hcChhhhhhHHHHHHHHHHHHHHHHh-h-eeeccchHHHHHHhCCCHHHhhHHHH
Confidence 666777899999999987764 345665432 2233444333333211 0 110000 00 368999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCc
Q psy8867 301 FIANCRMKQIGIKQIFPYERNP 322 (355)
Q Consensus 301 y~an~~L~~lG~~~~f~~~~nP 322 (355)
...|..-.++ +|-+. +.+||
T Consensus 253 ~~Tn~~s~rv-FP~~L-dvd~P 272 (323)
T cd01047 253 RETNETAARV-FPAVL-DVDNP 272 (323)
T ss_pred HHhhHHHHhh-CCeee-cCCCh
Confidence 9999887664 23232 45777
No 39
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=94.69 E-value=0.99 Score=43.06 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=118.7
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy8867 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT--APECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE 147 (355)
Q Consensus 70 dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~--~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e 147 (355)
+|. .|+++-|..+.--|-.=..++ .-|--+-..+...+. +|.+..+++..+-+|++|+-+-+..+..++..-+
T Consensus 68 ~~~---~l~~~~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lD- 142 (357)
T PLN02508 68 AAD---KIQGPLRQIFIEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALD- 142 (357)
T ss_pred chh---hCCHHHHHHHHHHHHhhhhhh-cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCcccc-
Confidence 466 799988887765553322222 112223334666674 5999999999999999999999999988875422
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc--CCccchH
Q psy8867 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQ--NKMIGSS 224 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~--g~l~g~~ 224 (355)
...|.+.- -|.=+ .++ + .-+.. .+-|.|- |.=+..++ .|.++ ..+--+=
T Consensus 143 -------LgfLtk~r-----kYTfF-----------~Pk-f-IfYAt--YLSEKIG-YwRYItIyRHLe~~Pe~r~~PIF 194 (357)
T PLN02508 143 -------LGFLTKNR-----KYTFF-----------KPK-F-IFYAT--YLSEKIG-YWRYITIYRHLQANPDYQLYPIF 194 (357)
T ss_pred -------chhhcccC-----ceeee-----------Ccc-e-eehhh--Hhhhhhh-hhhHhHHHHHHHhCcccccchHH
Confidence 12222110 00000 000 0 00111 1234443 22334443 66664 3455556
Q ss_pred HHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH-HHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCHHHHHHHHH
Q psy8867 225 ELYQYILRDESMHCNFGIDLINTIKMENPNLWTT-EFCKEIEQLFLKAIELEYYYAEDTMP---KGILGLNVKTFKSYLR 300 (355)
Q Consensus 225 ~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~-~~~~~i~~l~~~ave~E~~~~~~~~~---~~i~Gl~~~~~~~yv~ 300 (355)
+-.+.=+.||.+|+.+...++ +..|+++.. ..+=|++=.+..+... =|+.+.-. -+.+|+++.+....|-
T Consensus 195 k~Fe~WCqDEnRHGd~Fa~lm----raqP~ll~g~~~kLW~RFFLLsVfaT--Myl~d~~R~~Fy~alGld~~~yD~~Vi 268 (357)
T PLN02508 195 KYFENWCQDENRHGDFFSALL----KAQPQFLNDWKAKLWSRFFCLSVYVT--MYLNDHQRTAFYEGIGLNTKQFNMHVI 268 (357)
T ss_pred HHHHHHhcccchhHHHHHHHH----HcChhhhhhHHHHHHHHHHHHHHHHH--heeeccchHHHHHHhCCCHHHhhHHHH
Confidence 666777899999999987764 445665433 2334444433333321 01110000 0358999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCc
Q psy8867 301 FIANCRMKQIGIKQIFPYERNP 322 (355)
Q Consensus 301 y~an~~L~~lG~~~~f~~~~nP 322 (355)
-..|..-.++ +|-+. +.+||
T Consensus 269 ~~Tne~s~rv-FP~~L-dvd~P 288 (357)
T PLN02508 269 IETNRTTARI-FPAVL-DVENP 288 (357)
T ss_pred HHhhHHHHhh-CCeee-cCCCH
Confidence 8998877654 22222 45677
No 40
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=94.07 E-value=0.072 Score=50.55 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcC--CccchHHHHHHHHhchhhHHhHHHHHHH
Q psy8867 205 YVGFVQILALGRQN--KMIGSSELYQYILRDESMHCNFGIDLIN 246 (355)
Q Consensus 205 ~sgF~~~~~l~~~g--~l~g~~~~i~~I~RDE~~H~~~~~~l~~ 246 (355)
+|||...--++++. .=|-+++++.+++|||++|.+|.-.-++
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (357)
T PLN02508 92 FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALS 135 (357)
T ss_pred cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHH
Confidence 58999888999876 5599999999999999999998554443
No 41
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=93.02 E-value=4.3 Score=33.23 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=39.4
Q ss_pred HhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy8867 98 LAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE 145 (355)
Q Consensus 98 ~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~ 145 (355)
..+..+-..++..+++|+.+..+...+.+|.-|.+.+..++..++.++
T Consensus 11 ~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 11 ITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 334334446778889999999999999999999999999999887654
No 42
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=91.91 E-value=10 Score=34.95 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=106.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchH
Q psy8867 108 YRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL-DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186 (355)
Q Consensus 108 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~-~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (355)
....|..|.+..++..+-+|.=|++.+-.+...++. ++++ +. +..+|.- .|+-.+. ++ | ..
T Consensus 16 ~~~AP~LEediAlanialD~lGhAr~~y~~a~el~g~~ed~-La-~~R~~~~-frn~~l~----e~----------P-~g 77 (237)
T TIGR02158 16 CGHAPELEEDIALANIALDLLGHARMFLSLAGQLGGGDEDT-LA-FFRDEAE-FRNLRLT----EL----------P-NG 77 (237)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH-HH-HhcChHH-hhhhHHH----hC----------C-CC
Confidence 356788899999999999999999999999999954 4443 33 2222321 1222121 11 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHH
Q psy8867 187 KLLKSLIVFACIMEGLFFYVGFVQIL--ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264 (355)
Q Consensus 187 ~~~~~lv~f~~~lEgi~f~sgF~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i 264 (355)
+|...++- + +||.++.... .|. +.--+-++.+...|++.|..|...+...+..|..-- ++-
T Consensus 78 dwa~tv~r-~------~l~d~~~~~~l~~L~-~ss~~pla~ia~K~~kEe~yH~~h~~~w~~rL~~gt---------~es 140 (237)
T TIGR02158 78 DFALTIAR-Q------FLYDAYKVLLLEALT-QSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLGT---------EES 140 (237)
T ss_pred CHHHHHHH-H------HHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------HHH
Confidence 24433332 2 4556666554 333 456788999999999999999999999999887531 222
Q ss_pred HHHHHHHHHHHHHHHHhhcC----------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q psy8867 265 EQLFLKAIELEYYYAEDTMP----------KGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315 (355)
Q Consensus 265 ~~l~~~ave~E~~~~~~~~~----------~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~ 315 (355)
++.+++|++.=--++..+|. .|+ +.+.+++.+--.-.....|..+|++-+
T Consensus 141 ~~r~Q~Ald~~wp~~~elF~~~~~~~~l~~~Gi-~~~~~~Lr~~w~~~v~~~l~~agL~~P 200 (237)
T TIGR02158 141 HRRLQEALNELWPYTAELFEAGPIDEELAEAGI-AVDPATLQAAWEKEVNAVLNEATLTLP 200 (237)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33344444433333333443 122 235666665555566777889998765
No 43
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=90.97 E-value=10 Score=33.26 Aligned_cols=142 Identities=18% Similarity=0.133 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHh--hCHHHH
Q psy8867 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH--EIKSIR 159 (355)
Q Consensus 85 ~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~--~~p~l~ 159 (355)
+..+|+.=..++ ..+..+-..++..+++++++..+...+.+|..|...++.++..+..++.. ...+.. ..+..+
T Consensus 25 ~~e~L~~Ai~~E-~eA~~fY~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (176)
T COG1633 25 IEELLAIAIRGE-LEAIKFYEELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQ 103 (176)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccC
Confidence 344444443344 33333444678899999999999999999999999999999999765411 010000 001110
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHh
Q psy8867 160 DKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCN 239 (355)
Q Consensus 160 ~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~ 239 (355)
. + +. .....++.+.+-+ + +++-..-..|+.-.... ..=++...+++.+..||.-|..
T Consensus 104 ~----~-~~-------------~~~~~~~~~~I~~-a--~~~E~~t~~~Y~~~~~~--~~~~~~~~~~~~~a~~E~~H~~ 160 (176)
T COG1633 104 P----G-KE-------------MEKSVSYLEAIEA-A--MEAEKDTIEFYEELLDE--LVNEEAKKLFKTIADDEKGHAS 160 (176)
T ss_pred c----c-cc-------------cccchhHHHHHHH-H--HHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0111223333332 2 23333333333333222 2337888899999999999999
Q ss_pred HHHHHHHHHHh
Q psy8867 240 FGIDLINTIKM 250 (355)
Q Consensus 240 ~~~~l~~~l~~ 250 (355)
.....++.+.+
T Consensus 161 ~l~~~~~~~~~ 171 (176)
T COG1633 161 GLLSLYNRLTS 171 (176)
T ss_pred HHHHHHHHHhc
Confidence 88887776653
No 44
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=90.21 E-value=7 Score=31.59 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=33.4
Q ss_pred hHhhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy8867 106 GTYRHITA--PECRQYLLRQAFEEAIHTHAYQYIVESLGLDE 145 (355)
Q Consensus 106 ~l~~~~~~--~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~ 145 (355)
.++..+++ |+++.++...+.+|..|...+..++..++...
T Consensus 19 ~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~ 60 (137)
T PF02915_consen 19 ELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGE 60 (137)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45555555 89999999999999999999999999886553
No 45
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=86.95 E-value=13 Score=30.78 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=65.2
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchH
Q psy8867 107 TYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186 (355)
Q Consensus 107 l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (355)
....-.-+++..++..++..|..|+.-|...+..++..+. .|... .. +..
T Consensus 26 ~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~--------~~~~~--~~--------------------~~~ 75 (134)
T cd01041 26 KARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT--------GPPIG--IG--------------------DTL 75 (134)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------CCCCC--cc--------------------hHH
Confidence 4455667899999999999999999999988887765432 11000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHH
Q psy8867 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINT 247 (355)
Q Consensus 187 ~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~ 247 (355)
..++..+. .|-.-.-..+.-+.-.++...-..++..+..|..||..|......++..
T Consensus 76 ~~l~~~~~----~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 76 ENLKAAIA----GETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHHHHH----hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01111111 1111011223333345556668999999999999999999876665543
No 46
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=79.40 E-value=53 Score=30.48 Aligned_cols=134 Identities=16% Similarity=0.240 Sum_probs=83.0
Q ss_pred HHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHhhCHHHHHHHHHHH
Q psy8867 90 GFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYHEIKSIRDKDEFLI 166 (355)
Q Consensus 90 ~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l---~~~~~e~f~~~~~~p~l~~k~~~i~ 166 (355)
..|-.++....+..- ...+.+++|+++.=...++.+|+.|++.-..+++.+ +.+.+.. +........
T Consensus 34 ~~fP~GE~ffi~svr-~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~~G~~~~~~---------~~~~~~~~~ 103 (253)
T PF10118_consen 34 LLFPEGERFFIRSVR-RARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEAQGYDVRPF---------LEKMEKLFL 103 (253)
T ss_pred HhhhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH---------HHHHHHHHH
Confidence 344456666655443 467889999999999999999999999988888776 3332221 111111111
Q ss_pred HHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCccchHHHHHHHHhchhhHHhHH
Q psy8867 167 PFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR-----QNKMIGSSELYQYILRDESMHCNFG 241 (355)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~-----~g~l~g~~~~i~~I~RDE~~H~~~~ 241 (355)
+.++... .....| ++.+.+|-.-..-|= +.|.. .|.=|.+.++..|=.--|.=|...+
T Consensus 104 ~~l~~~~-------------~~~~~L-a~taalEH~TA~la~---~~L~~~~~~~~~adp~~~~Lw~WHa~EE~EHksVA 166 (253)
T PF10118_consen 104 KFLEKRL-------------SLKFQL-AYTAALEHFTAVLAE---WLLNNPELLFAGADPEMRDLWRWHAAEEVEHKSVA 166 (253)
T ss_pred HHHhhhc-------------CHHHHH-HHHHHHHHHHHHHHH---HHhcChhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2222100 012223 335567875543222 23332 3556889999999999999998887
Q ss_pred HHHHHHHHh
Q psy8867 242 IDLINTIKM 250 (355)
Q Consensus 242 ~~l~~~l~~ 250 (355)
--+++.+..
T Consensus 167 fDvy~~~~g 175 (253)
T PF10118_consen 167 FDVYQAVGG 175 (253)
T ss_pred HHHHHHHcC
Confidence 778777764
No 47
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=76.18 E-value=66 Score=31.76 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=86.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhc-hHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHH
Q psy8867 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANN-IVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV-ESLGLDEL 146 (355)
Q Consensus 69 ~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~-l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il-~~l~~~~~ 146 (355)
.-|. .++.+-|..+.+++..+ +|+..+-. --..+...+|+---...+.....+|.+|.-+-.++| +-++.+..
T Consensus 95 ~awq---evPgE~r~~L~riIv~Q--gDtEpASVEQqr~lg~taPSlyD~rnlfqvnvEEgRHlWaMvyLL~k~FG~dGr 169 (471)
T TIGR03225 95 PAWQ---EVPGEYRSMLRRLIVIQ--GDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHKYFGRDGR 169 (471)
T ss_pred chHh---hCCHHHHHHHHHHHhhc--cCCCchhHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccH
Confidence 5699 89999999999999877 55433210 001122344544334344345588999999999999 66776643
Q ss_pred HHHHHH-------hhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy8867 147 EIFNAY-------HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNK 219 (355)
Q Consensus 147 e~f~~~-------~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~ 219 (355)
|.-+.+ .++|.+. ..+. .+. .-..+.++|.+++-. .|-+-+.+++..|
T Consensus 170 eeAe~LL~rrsGd~d~PRiL-------~AFN-----------~~t--~dWlsffmFT~ftDR----dGk~QL~alaeS~- 224 (471)
T TIGR03225 170 EEAEALLRRRSGDADNPRIL-------GAFN-----------EKT--PDWLSFFMFTYFTDR----DGKMQLAALAESG- 224 (471)
T ss_pred HHHHHHHHhhcCCCCCcchh-------hhcc-----------CCC--ccHHHHhHhheeecc----cchhhHHHHHhcC-
Confidence 211111 1122111 0110 011 113344444444444 2333445666666
Q ss_pred ccchHHHHHHHHhchhhHHhHHHHHHHHHH
Q psy8867 220 MIGSSELYQYILRDESMHCNFGIDLINTIK 249 (355)
Q Consensus 220 l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~ 249 (355)
+--++...+.++..|..|.-+|-.=+..++
T Consensus 225 FdPLaRt~rfMltEEahHmfvGetGv~rvi 254 (471)
T TIGR03225 225 FDPLSRTCRFMLTEEAHHMFVGESGVGRVI 254 (471)
T ss_pred CchHhhhhHHHhhhhHhHhhhhhHHHHHHH
Confidence 445788899999999999999885555444
No 48
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=74.46 E-value=46 Score=28.00 Aligned_cols=117 Identities=17% Similarity=0.095 Sum_probs=66.0
Q ss_pred hHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q psy8867 103 IVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNT 182 (355)
Q Consensus 103 l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~ 182 (355)
+...++....+++++..+...+.+|-.|++....++..++.++.- ....... . ..|..... ...
T Consensus 36 ~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~-~~~~~~~--~---~~~~~~~~----------~~~ 99 (154)
T cd07908 36 IYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRY-RSSSSDK--F---TYWTGKYV----------NYG 99 (154)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-hhhcccc--C---CcCCcccc----------CCc
Confidence 333444455789999999999999999999999999999865531 0000000 0 00000000 001
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHH
Q psy8867 183 KNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243 (355)
Q Consensus 183 ~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~ 243 (355)
.+....++..+. .=-.++-+|...+- .-.=+.+.+++..|+.||..|......
T Consensus 100 ~~~~~~L~~~~~--~E~~ai~~Y~~~~~------~~~d~~~r~ll~~I~~eE~~H~~~L~~ 152 (154)
T cd07908 100 ESIKEMLKLDIA--SEKAAIAKYKRQAE------TIKDPYIRALLNRIILDEKLHIKILEE 152 (154)
T ss_pred cCHHHHHHHHHH--HHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222221111 11235555544332 223388999999999999999986443
No 49
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=69.11 E-value=14 Score=31.24 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=48.2
Q ss_pred HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH-------------HHHHHHHHHHHHHHHHHHHHH
Q psy8867 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT-------------EFCKEIEQLFLKAIELEYYYA 279 (355)
Q Consensus 213 ~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~-------------~~~~~i~~l~~~ave~E~~~~ 279 (355)
.+..++.-+.+.+++..+++||..|......++..+..+ |..... .....+.++++.++..|++-+
T Consensus 39 ~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai 117 (154)
T cd07908 39 HLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGD-PRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAI 117 (154)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchhhccccCCcCCccccCCccCHHHHHHHHHHHHHHHH
Confidence 334455679999999999999999999999988877542 221100 012346678889999998877
Q ss_pred Hh
Q psy8867 280 ED 281 (355)
Q Consensus 280 ~~ 281 (355)
+.
T Consensus 118 ~~ 119 (154)
T cd07908 118 AK 119 (154)
T ss_pred HH
Confidence 43
No 50
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=66.87 E-value=2.9 Score=25.54 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHH
Q psy8867 288 LGLNVKTFKSYLRFI 302 (355)
Q Consensus 288 ~Gl~~~~~~~yv~y~ 302 (355)
.|+++++++.|+++.
T Consensus 15 ~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 15 SGLSKEEIREFLEFN 29 (30)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 699999999999874
No 51
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=65.52 E-value=55 Score=27.46 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc--cc--HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8867 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL--WT--TEFCKEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~--~~--~~~~~~i~~l~~~ave~E~~~~~~ 281 (355)
.++.+. -+||++..++..+.+|..|..-....+..+-. .|.. .. ......+.++++.+++.|+.....
T Consensus 27 ~~~~~~-~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg-~~~~~~~~~~~~~~~~~~~~l~~al~~E~~~~~~ 98 (156)
T cd01055 27 AWFDSK-GLDGFANFFRVQAQEEREHAMKFFDYLNDRGG-RVELPAIEAPPSEFESLLEVFEAALEHEQKVTES 98 (156)
T ss_pred HHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CeeCCCCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 344444 49999999999999999999876655544321 1111 00 001234678999999999985543
No 52
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=65.51 E-value=22 Score=34.88 Aligned_cols=44 Identities=23% Similarity=0.125 Sum_probs=35.7
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHH
Q psy8867 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDELEIF 149 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e~f 149 (355)
.+.....+|-+....+..+.+|+.|..+|+++++.+. .+|++..
T Consensus 233 rlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~tm 277 (390)
T PLN00179 233 RLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAV 277 (390)
T ss_pred HHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccHHH
Confidence 4556667899999999999999999999999998875 4565433
No 53
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=64.98 E-value=10 Score=30.54 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh-hCCc------------cccHHHHHHHH
Q psy8867 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM-ENPN------------LWTTEFCKEIE 265 (355)
Q Consensus 199 lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~-e~~~------------~~~~~~~~~i~ 265 (355)
.+|..||..++- .....| |.+..++..+++||..|..+...+++.+.. ..|. ...........
T Consensus 11 ~~~~~~Y~~~a~--~~~~~~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (137)
T PF02915_consen 11 LEAAKFYRELAE--KAKDEG--PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEETDENLE 86 (137)
T ss_dssp HHHHHHHHHHHH--HHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSSHHHHHH
T ss_pred HHHHHHHHHHHH--Hhhhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhhhhHHHH
Confidence 455566655542 222334 889999999999999999998888887732 1121 01112334667
Q ss_pred HHHHHHHHHHHHH
Q psy8867 266 QLFLKAIELEYYY 278 (355)
Q Consensus 266 ~l~~~ave~E~~~ 278 (355)
.+++.++..|..-
T Consensus 87 ~~l~~a~~~E~~~ 99 (137)
T PF02915_consen 87 EALEMAIKEEKDA 99 (137)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777653
No 54
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=64.61 E-value=71 Score=25.44 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=34.4
Q ss_pred HhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy8867 105 LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142 (355)
Q Consensus 105 ~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~ 142 (355)
..++..+++++++.++...+.+|..|.+.+..++..++
T Consensus 18 ~~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 18 LELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677889999999999999999999999999999885
No 55
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=64.57 E-value=31 Score=32.90 Aligned_cols=42 Identities=38% Similarity=0.309 Sum_probs=34.5
Q ss_pred hHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Q psy8867 106 GTYRHI--TAPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDELE 147 (355)
Q Consensus 106 ~l~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e 147 (355)
++.... .+|-++..++..+.+|+.|..+|+.+++.+. .++++
T Consensus 168 nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~ 212 (297)
T cd01050 168 NTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDG 212 (297)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 455566 8999999999999999999999999998764 34443
No 56
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=64.41 E-value=99 Score=27.07 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=90.6
Q ss_pred HhhcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcch
Q psy8867 107 TYRHITAPECR-QYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185 (355)
Q Consensus 107 l~~~~~~~E~~-~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~ 185 (355)
+....++++.. .++.........+.+.+..+++.++.+.++ .......|..+.-.+++.+....
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~-~~~~~~~p~~~~y~~~l~~~a~~-------------- 115 (210)
T PF03070_consen 51 LASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISRED-LENIEPSPATRAYTDFLLSLAQT-------------- 115 (210)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH-HHHSTC-HHHHHHHHHHHHHHHH--------------
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHhhhhhhHHHHHHHHHHHHhcc--------------
Confidence 44566777665 555555555666788889999999988776 45556678887777777654321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccc--hHHHHHHHHhchh-hHHhHHHHHHHHHHhhCCccccHHHH
Q psy8867 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNK-MIG--SSELYQYILRDES-MHCNFGIDLINTIKMENPNLWTTEFC 261 (355)
Q Consensus 186 ~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~-l~g--~~~~i~~I~RDE~-~H~~~~~~l~~~l~~e~~~~~~~~~~ 261 (355)
..+...+++. .-+|.+....| -.+..... .++ ..+-|+.=.-+|- -++.-...+++.+..+.+ ++-.
T Consensus 116 ~~~~~~l~al-~pc~~~Y~~~~----~~~~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~----~~~~ 186 (210)
T PF03070_consen 116 GSLAEGLAAL-LPCEWIYAEIG----KRLAEKLRAPEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEAS----DEER 186 (210)
T ss_dssp SSHHHHHHHH-HHHHHHHHHHH----HHHHHHCSTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHH----HHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHH----HHHhccccCCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCC----HHHH
Confidence 1245555553 23344433322 12222211 122 3444555444443 345555666666654422 2336
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy8867 262 KEIEQLFLKAIELEYYYAEDTM 283 (355)
Q Consensus 262 ~~i~~l~~~ave~E~~~~~~~~ 283 (355)
+++.+++..+++.|..|-+..+
T Consensus 187 ~~~~~~f~~~~~~E~~Fwd~a~ 208 (210)
T PF03070_consen 187 ERLEEIFRRSCELEYDFWDAAY 208 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999987654
No 57
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=63.94 E-value=93 Score=26.61 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHH
Q psy8867 112 TAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191 (355)
Q Consensus 112 ~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (355)
.+++++..+...+.+|--|.+..+..+..|+.++.- ..| +-+.+... . +....++.
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g-~pw--~~~yv~~~--------------------~-d~~~~L~~ 106 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG-VPW--TAAYIQSS--------------------G-NLVADLRS 106 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcC--CCcccCCC--------------------C-CHHHHHHH
Confidence 679999999999999999999999999988854321 111 00000000 0 01111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHH
Q psy8867 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248 (355)
Q Consensus 192 lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l 248 (355)
++-.|--. -..+.-.+... + =|++..++.+|..||..|..-...++..+
T Consensus 107 ----ni~aE~~A-i~~Y~~l~~~~-~--Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 107 ----NIAAESRA-RLTYERLYEMT-D--DPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred ----HHHHHHHH-HHHHHHHHHHc-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222210 01111112222 2 39999999999999999998777766543
No 58
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=62.70 E-value=35 Score=33.09 Aligned_cols=41 Identities=34% Similarity=0.280 Sum_probs=34.2
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHH
Q psy8867 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEL 146 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~-~~~~ 146 (355)
.+.....+|-+...++..+.+|+.|..+|+.+++.+. .+++
T Consensus 176 ~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd 217 (330)
T PF03405_consen 176 RLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPD 217 (330)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcH
Confidence 3555569999999999999999999999999998764 3444
No 59
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=55.43 E-value=79 Score=25.15 Aligned_cols=61 Identities=20% Similarity=0.116 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHhchhhHHhHHHHHHHHHHh-hCCccccHH----------------HHHHHHHHHHHHHHHHHHHHH
Q psy8867 220 MIGSSELYQYILRDESMHCNFGIDLINTIKM-ENPNLWTTE----------------FCKEIEQLFLKAIELEYYYAE 280 (355)
Q Consensus 220 l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~-e~~~~~~~~----------------~~~~i~~l~~~ave~E~~~~~ 280 (355)
-+++..++..+++||..|......++..+.. ..|...... ......++++.++..|..-+.
T Consensus 26 ~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~ 103 (139)
T cd01045 26 DPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALESLMDPLEALRLAIEIEKDAIE 103 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999998888887741 233221111 113456778888888886654
No 60
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=55.13 E-value=1.1e+02 Score=24.75 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=58.4
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchH
Q psy8867 107 TYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186 (355)
Q Consensus 107 l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (355)
....-.-+++..++..|+..|..|++-|..++..+..+..+.+......
T Consensus 26 ~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i~~~~~~~le~a~~~------------------------------- 74 (123)
T cd01046 26 VAQREGYPEVAEELKRIAMEEAEHAARFAELLGKVSEDTKENLEMMLEG------------------------------- 74 (123)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh-------------------------------
Confidence 4456667889999999999999999999886643211111111111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHH
Q psy8867 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINT 247 (355)
Q Consensus 187 ~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~ 247 (355)
|.--- ..+.-+...++.-....+...++.|.++|..|......++..
T Consensus 75 -------------E~~~~-~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 75 -------------EAGAN-EGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLER 121 (123)
T ss_pred -------------HHHHH-HhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11000 011122233444557888999999999999999876666543
No 61
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=50.72 E-value=84 Score=26.89 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.0
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8867 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL 141 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l 141 (355)
.++..+.+|.++..+.+.+.+|..|.+.|...++.+
T Consensus 120 ~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 120 RLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677899999999999999999999999998865
No 62
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=47.04 E-value=66 Score=27.98 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=40.2
Q ss_pred HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhh--CCcc---ccHHH-HHHHHHHHHHHHHHHHHHHHhh
Q psy8867 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME--NPNL---WTTEF-CKEIEQLFLKAIELEYYYAEDT 282 (355)
Q Consensus 213 ~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e--~~~~---~~~~~-~~~i~~l~~~ave~E~~~~~~~ 282 (355)
|+...| |||++.-++-=+.+|..|..- +++-+... .|.. ..... -..+.++++.++++|..-...+
T Consensus 30 ~~~~~~-l~G~A~f~~~qa~EE~~H~~k---~~~yl~~~g~~~~l~~I~~P~~~~~s~~e~f~~tlehEq~vt~~I 101 (167)
T COG1528 30 WCSSES-LPGFAKFLRAQAQEELTHAMK---LFNYLNERGARPELKAIEAPPNKFSSLKELFEKTLEHEQKVTSSI 101 (167)
T ss_pred HHhhcC-ChhHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCceecCcCCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 444445 999999999999999999864 44444431 1111 01011 1346677777777777655443
No 63
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=46.77 E-value=1.8e+02 Score=28.86 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchH-HHHHHHHhchhhHHhHHHHHHHH--HHhhCCc-cccHHHHHHHHH--HHHHHH
Q psy8867 199 MEGLFFYVGFVQILALGRQNKMIGSS-ELYQYILRDESMHCNFGIDLINT--IKMENPN-LWTTEFCKEIEQ--LFLKAI 272 (355)
Q Consensus 199 lEgi~f~sgF~~~~~l~~~g~l~g~~-~~i~~I~RDE~~H~~~~~~l~~~--l~~e~~~-~~~~~~~~~i~~--l~~~av 272 (355)
.|.+.-|+||+-+--.-.--++||.. .+++.|.+.-.+-...-..++.. +- -+.+ .+.+.|.+.+.+ .+.+|+
T Consensus 125 ~E~~RrygGFYGpTcVvDFAliPGSTsNVVN~IL~~~DIp~~hkqaiLaaKSWG-MNTSYg~G~~Fa~~iE~g~t~~eA~ 203 (499)
T PF09959_consen 125 KESARRYGGFYGPTCVVDFALIPGSTSNVVNQILKKTDIPVDHKQAILAAKSWG-MNTSYGIGDVFAHAIEEGKTLAEAV 203 (499)
T ss_pred HHHHHHhcCccCCceeeeeeecCCchHHHHHHHHHhCCCcHHHHHHHHHhcccC-CccccccHHHHHHHHHcCCCHHHHH
Confidence 69999999999554333445788864 56677877655444433333211 00 0111 233344444333 566777
Q ss_pred HHHHHHHHhhcC
Q psy8867 273 ELEYYYAEDTMP 284 (355)
Q Consensus 273 e~E~~~~~~~~~ 284 (355)
+.|++-+..++.
T Consensus 204 ~~Ei~~~q~iy~ 215 (499)
T PF09959_consen 204 KKEIKMMQFIYD 215 (499)
T ss_pred HHHHHHHHHHHh
Confidence 777777777665
No 64
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=44.79 E-value=53 Score=31.12 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred hhcCCCCCcccccccchh-hhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHH
Q psy8867 52 SCANHWMPQEINMQRDIE-LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130 (355)
Q Consensus 52 ~~~~fW~p~Ei~l~~D~~-dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH 130 (355)
...+-|+..-|.-+.|.. |... ++ .++ ..++....+++....+|.++-++++-+..|.+|
T Consensus 123 s~G~PWt~~yv~~sGdl~aDL~~--Ni----------------aAE-~~AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH 183 (283)
T PF05067_consen 123 SNGVPWTAAYVQASGDLIADLRS--NI----------------AAE-QRARLQYERLYEMTDDPGVKDMLSFLLAREIVH 183 (283)
T ss_dssp TTS-B-BGGG----S-HHHHHHH--HH----------------HHH-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred CCCCcccchhhhhcCCHHHHHHH--HH----------------HHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 445678888887777654 3331 11 122 334445567888999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q psy8867 131 THAYQYIVESLGL 143 (355)
Q Consensus 131 ~~sYs~il~~l~~ 143 (355)
...|...|+++..
T Consensus 184 ~~~f~~ALe~l~~ 196 (283)
T PF05067_consen 184 QQQFGKALEELQE 196 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998853
No 65
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=44.72 E-value=56 Score=29.87 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8867 211 ILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 211 ~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
.|++ +.+.-.....+|+-|.++|.+|....+++++.+-.
T Consensus 19 ~ySi-~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg 57 (227)
T PF12902_consen 19 LYSI-KPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGG 57 (227)
T ss_dssp HHHB-S-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred Hccc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3555 44545558999999999999999999999998754
No 66
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=44.32 E-value=41 Score=27.94 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=39.6
Q ss_pred hHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc------cc--------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8867 223 SSELYQYILRDESMHCNFGIDLINTIKMENPNL------WT--------TEFCKEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 223 ~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~------~~--------~~~~~~i~~l~~~ave~E~~~~~~ 281 (355)
...++..|++.|+.|......+++.+.-..|.. +. .....-..+.++-++..|...+..
T Consensus 28 ~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~s~~~al~~g~~~E~~~i~~ 100 (135)
T cd01048 28 GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQGPKSLQDALEVGVLIEELDIAD 100 (135)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 678889999999999998888887665333321 10 011223566777888888876643
No 67
>PRK13456 DNA protection protein DPS; Provisional
Probab=42.60 E-value=2.4e+02 Score=24.97 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCc-cchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH----------HH---H
Q psy8867 196 ACIMEGLFFYVGFVQILALGRQNKM-IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT----------EF---C 261 (355)
Q Consensus 196 ~~~lEgi~f~sgF~~~~~l~~~g~l-~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~----------~~---~ 261 (355)
+...|-+.+| .+...++.-.|.+ ++++..+.-..-||..|....+.=+.+|--+.|....+ +. .
T Consensus 28 AlA~E~~a~~--~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~~~~~p~d~ 105 (186)
T PRK13456 28 NAAAEFTTYY--YYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACPDAYLPENP 105 (186)
T ss_pred HHHHHHHHHH--HHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCccccCCCCc
Confidence 3344555443 3333455557877 67777777777799999999887777776554322111 01 1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8867 262 KEIEQLFLKAIELEYYYA 279 (355)
Q Consensus 262 ~~i~~l~~~ave~E~~~~ 279 (355)
..+.+|+++.++.|..-|
T Consensus 106 tdv~~mL~~~L~AEr~AI 123 (186)
T PRK13456 106 TDPKEILKVLLEAERCAI 123 (186)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 268899999998887544
No 68
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=42.46 E-value=44 Score=31.39 Aligned_cols=55 Identities=7% Similarity=-0.033 Sum_probs=24.9
Q ss_pred HHHHHHHHH-HHHhhhH-hhhchHHhHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8867 83 RLVKRNLGF-FSTADSL-AANNIVLGTYRHITAP---ECRQYLLRQAFEEAIHTHAYQYIVE 139 (355)
Q Consensus 83 ~~~~~~l~~-~~~~Ds~-v~~~l~~~l~~~~~~~---E~~~~~~~q~~~E~iH~~sYs~il~ 139 (355)
+.++...+. ++.-+.+ .+++.. ... ..+.. ..+..+++++..|.+=+.-...++.
T Consensus 11 ~ly~~~~~~~~W~~~eid~s~D~~-~w~-~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~ 70 (280)
T cd07911 11 KLFEKGKRKGFWNPADIDFSQDRE-DWE-QLSEEERDLALRLCAGFIAGEEAVTLDLLPLMM 70 (280)
T ss_pred HHHHHHHccCCCCHHHcCccchHH-HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665 4443333 222221 121 23333 2344555666666555555544444
No 69
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.10 E-value=2.9e+02 Score=25.47 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------HHHHH
Q psy8867 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL------EIFNA 151 (355)
Q Consensus 78 s~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~------e~f~~ 151 (355)
|+.-+..+.+.++-.-+.-...+-+.+-.|. -++..=.+-++ .-+.+|+.|-..-+.-|.+++-+=. -+...
T Consensus 72 t~~g~aallHAiAHIEfNAInLaLDa~~RF~-~~p~~F~~dWm-~VA~EE~~HF~Ll~~~L~~LG~~YGDfpaHdgLw~~ 149 (268)
T COG2833 72 TTHGRAALLHAIAHIEFNAINLALDAVYRFA-PLPLQFYDDWM-RVADEEAKHFRLLRERLKSLGYDYGDFPAHDGLWQM 149 (268)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhc-CCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCcCCCcccccHHHH
Confidence 3444666666665433222112212222332 33333445555 6678999999999999999985411 01111
Q ss_pred ---HhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHH
Q psy8867 152 ---YHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQ 228 (355)
Q Consensus 152 ---~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~ 228 (355)
-.++ +-.|+..+-.. +|.--+=..=.+---++.+|-+.. +.+++
T Consensus 150 a~~T~~d--l~~RmalVprv------------------------------LEARGLDatP~l~aK~~~~gD~~~-~~iLd 196 (268)
T COG2833 150 AEATAND--LLARMALVPRV------------------------------LEARGLDATPSLRAKLAETGDSEA-AAILD 196 (268)
T ss_pred HHHhhcC--HHHHhhhhhhH------------------------------HhhccCCCCHHHHHHHHHcCchHH-HHHHH
Confidence 1112 22333333322 232111111111123334554443 88999
Q ss_pred HHHhchhhHHhHHHHHHHHHHhhC
Q psy8867 229 YILRDESMHCNFGIDLINTIKMEN 252 (355)
Q Consensus 229 ~I~RDE~~H~~~~~~l~~~l~~e~ 252 (355)
-|.|||--|+..|..=++-++++.
T Consensus 197 IIlrDEigHVaiGn~Wyrflc~r~ 220 (268)
T COG2833 197 IILRDEIGHVAIGNKWYRFLCARR 220 (268)
T ss_pred HHHhccccceeechHHHHHHHHhc
Confidence 999999999999999999998764
No 70
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=39.37 E-value=1.2e+02 Score=22.95 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=14.3
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy8867 109 RHITAPECRQYLLRQAFEEAIHTHAYQY 136 (355)
Q Consensus 109 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~ 136 (355)
..+.+++.+.++...+.+|..|...+..
T Consensus 101 ~~~~d~~~~~~~~~~~~~E~~H~~~~~~ 128 (130)
T cd00657 101 EQADDPELRRLLERILADEQRHAAWFRK 128 (130)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555554443
No 71
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=39.25 E-value=94 Score=24.12 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhCCCHH
Q psy8867 129 IHTHAYQYIVESLGLDEL 146 (355)
Q Consensus 129 iH~~sYs~il~~l~~~~~ 146 (355)
.|+..|.++++.++.+.+
T Consensus 17 ~H~~Lf~~~L~~~Gi~~~ 34 (106)
T PF14518_consen 17 SHPELFRRFLRALGIDDE 34 (106)
T ss_dssp -HHHHHHHHHHHTT----
T ss_pred cHHHHHHHHHHHcCCCCc
Confidence 699999999999998765
No 72
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=37.44 E-value=1.5e+02 Score=21.04 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCC
Q psy8867 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILG-LNVKTFKSYLRFIANCRMKQIGIKQ 314 (355)
Q Consensus 259 ~~~~~i~~l~~~ave~E~~~~~~~~~~~i~G-l~~~~~~~yv~y~an~~L~~lG~~~ 314 (355)
+=..++.++..+++++-+++++-....|.+. =-++.++..++-..+.+-++ ||-|
T Consensus 4 ~Qk~el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~qn-Gf~p 59 (59)
T PF10925_consen 4 QQKKELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQN-GFVP 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence 3357788899999999999999888775443 33466677777666665544 6543
No 73
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=37.37 E-value=2.1e+02 Score=22.75 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHH--------HHHHHHHH
Q psy8867 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC--------KEIEQLFL 269 (355)
Q Consensus 198 ~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~--------~~i~~l~~ 269 (355)
-++....|..++..+. ..-++|+++.++...-+|.-|..-.+..+..+-. .|.....++. ..+.+++.
T Consensus 11 e~~~~~~y~~~~~~~~---~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg-~p~~~~~~~~~~~~~~~~~~~~~~l~ 86 (142)
T PF00210_consen 11 ELQASQQYLNMHWNFD---GPNFPGLAKFFQDQAEEEREHADELAERILMLGG-KPSGSPVEIPEIPKPPEWTDPREALE 86 (142)
T ss_dssp HHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSTSHHHHHHHHSSSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCC-CCCCcHHHhhhhhccccCCcHHHHHH
Confidence 3455555555553333 4458999999999999999999877776655432 2322222111 26778888
Q ss_pred HHHHHHHHHHHhhc
Q psy8867 270 KAIELEYYYAEDTM 283 (355)
Q Consensus 270 ~ave~E~~~~~~~~ 283 (355)
.+++.|...+..+-
T Consensus 87 ~~l~~e~~~~~~~~ 100 (142)
T PF00210_consen 87 AALEDEKEIIEEYR 100 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888776543
No 74
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=37.28 E-value=71 Score=29.25 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=92.2
Q ss_pred HHHHHhhhHhhhchHHhHhhcCC--hHHHHHHHHHHH-HHHH---------HHHHHHHHHHHHhCCCHHHH---HHHHhh
Q psy8867 90 GFFSTADSLAANNIVLGTYRHIT--APECRQYLLRQA-FEEA---------IHTHAYQYIVESLGLDELEI---FNAYHE 154 (355)
Q Consensus 90 ~~~~~~Ds~v~~~l~~~l~~~~~--~~E~~~~~~~q~-~~E~---------iH~~sYs~il~~l~~~~~e~---f~~~~~ 154 (355)
-|-+++-++|. .+.+.=.|++| +|+.+.+.+... .+|+ -|-+.|-.-++.+|-+...+ ...+..
T Consensus 30 DFMSLlK~LQ~-~LTc~~~PW~P~~~p~~rrlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GAdt~~I~~fl~~~~~ 108 (232)
T PF11251_consen 30 DFMSLLKALQR-DLTCTSVPWVPPGDPETRRLINEIVLGEESDEDPDGGYISHFELYLDAMEEVGADTSPIDRFLSLLRE 108 (232)
T ss_pred HHHHHHHHHHH-hCcCCCCCCCCCCCchHHHHhhhhhhhhccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHc
Confidence 35556667775 35544446655 578888887665 3442 37788888888888775432 111111
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHH-------
Q psy8867 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELY------- 227 (355)
Q Consensus 155 ~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i------- 227 (355)
-..+. ..+.. .+-++..+.|++.- |.++.+|=- ..-+.-|.|+|..+.|++=..|
T Consensus 109 g~~v~-------~Al~~-------~~~p~~~~~Fv~~T--f~~i~~~~~--H~iAAaFtfGREdlIP~MF~~il~~~~~~ 170 (232)
T PF11251_consen 109 GTSVF-------EALQQ-------ADVPEPAKRFVRFT--FEIIAEGKP--HEIAAAFTFGREDLIPDMFRSILKDLNIP 170 (232)
T ss_pred CCCHH-------HHHHh-------cCCCHHHHHHHHHH--HHHHhcCCH--HHHHHHHHhccccchHHHHHHHHHHhcCC
Confidence 10110 11110 01111223344332 233333321 1123335566666666554433
Q ss_pred ------------HHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHH
Q psy8867 228 ------------QYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278 (355)
Q Consensus 228 ------------~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~ 278 (355)
+.|--|..-|+-.+..++..|+...|.. .+++....++|++.-+++
T Consensus 171 ~~~~~~f~yYL~RHIElDgdeHgPlA~~ml~~Lcg~D~~k-----w~ea~~aa~~AL~~Ri~L 228 (232)
T PF11251_consen 171 PGQLPTFRYYLERHIELDGDEHGPLAMQMLEELCGDDPQK-----WQEAEQAAKEALEARIAL 228 (232)
T ss_pred ccccHHHHHHHHhhhhcCCCcchHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHh
Confidence 6688899999999999999999876644 366777788888776654
No 75
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=36.45 E-value=2.9e+02 Score=24.04 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=31.2
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy8867 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~ 142 (355)
.++..-.-|++.-.+-.+++.|.+|+.....++.-+.
T Consensus 28 ~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 28 KVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4666777899999999999999999999988887543
No 76
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=35.39 E-value=1.6e+02 Score=25.71 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8867 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 198 ~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
=.|++.||...+ .+=.=+-+.+.+..|++||..|......++..+..
T Consensus 36 E~eA~~fY~~la------e~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~ 82 (176)
T COG1633 36 ELEAIKFYEELA------ERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTP 82 (176)
T ss_pred HHHHHHHHHHHH------HhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367888875444 22111358999999999999999998888776653
No 77
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=35.27 E-value=2.4e+02 Score=22.78 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=38.7
Q ss_pred hcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8867 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 216 ~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~ 281 (355)
+.--+|+++..++.+...|..|......++ ...| ..+.++++.+++.|..=...
T Consensus 28 ~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l----~~i~--------~~~~~~le~a~~~E~~~~~~ 81 (123)
T cd01046 28 QREGYPEVAEELKRIAMEEAEHAARFAELL----GKVS--------EDTKENLEMMLEGEAGANEG 81 (123)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hcCc--------ccHHHHHHHHHHhHHHHHHh
Confidence 333489999999999999999997655543 2122 45677888888888765543
No 78
>PF13668 Ferritin_2: Ferritin-like domain
Probab=33.54 E-value=2.6e+02 Score=22.69 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=59.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHH
Q psy8867 110 HITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE--LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK 187 (355)
Q Consensus 110 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~ 187 (355)
...+++++.++.....+|..|.+..+..+. +..+ .--|+. -.+ .-.++..
T Consensus 34 ~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~~----------------~~~----------~~~~~~~ 85 (137)
T PF13668_consen 34 AALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYDF----------------PFD----------PFTDDAS 85 (137)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCcccc----------------ccC----------CCCCHHH
Confidence 567889999999999999999999999886 3211 000211 000 0112333
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHH
Q psy8867 188 LLKSLIVFACIMEGLFF--YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245 (355)
Q Consensus 188 ~~~~lv~f~~~lEgi~f--~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~ 245 (355)
++.. +..+|.+.. |.|.+. .+ .=|.+..+..-|..+|..|......++
T Consensus 86 ~L~~----A~~~E~~~~~~Y~g~~~--~~----~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 86 FLRL----AYTLEDVGVSAYKGAAP--QI----EDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHH----HHHHHHHHHHHHHHHHH--Hc----CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322 345576442 222221 11 136788999999999999998766654
No 79
>PF13668 Ferritin_2: Ferritin-like domain
Probab=33.37 E-value=1.9e+02 Score=23.52 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=28.8
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8867 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il 138 (355)
...+.+++|+.+..++..+..|+.|...+..++
T Consensus 103 g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 103 GAAPQIEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466789999999999999999999998887765
No 80
>PRK10304 ferritin; Provisional
Probab=32.89 E-value=3.2e+02 Score=23.49 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=45.9
Q ss_pred HHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc----cHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8867 210 QILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW----TTEFCKEIEQLFLKAIELEYYYAEDT 282 (355)
Q Consensus 210 ~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~----~~~~~~~i~~l~~~ave~E~~~~~~~ 282 (355)
.-.+|...| +||+++-+..=+.+|.-|..-....+...-. .|..- ....-..+.++++.+.++|+.-...+
T Consensus 27 ma~~~~~~g-l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg-~~~~~~i~~p~~~~~s~~e~~~~~l~~E~~vt~~i 101 (165)
T PRK10304 27 MSAWCSYHT-FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGN-LPRINTVESPFAEYSSLDELFQETYKHEQLITQKI 101 (165)
T ss_pred HHHHHhhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CeeeCCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 334666677 7999999999999999998754444333211 22210 01122457788889999988766544
No 81
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=32.39 E-value=1.3e+02 Score=24.59 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=40.8
Q ss_pred HhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhh--CCccccHHHHHHHHHHHHHHHHHHHH
Q psy8867 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME--NPNLWTTEFCKEIEQLFLKAIELEYY 277 (355)
Q Consensus 214 l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e--~~~~~~~~~~~~i~~l~~~ave~E~~ 277 (355)
....| ++|++..++.++.+|..|.......+..+... .|.. ....+.+.++.+++.|..
T Consensus 27 a~~~g-~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~----~~~~~~~~l~~~~~~E~~ 87 (134)
T cd01041 27 ARKEG-YEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPI----GIGDTLENLKAAIAGETY 87 (134)
T ss_pred HHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCC----CcchHHHHHHHHHHhhHH
Confidence 33445 99999999999999999998766665554322 1111 114566888888888873
No 82
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=29.93 E-value=46 Score=22.78 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=18.7
Q ss_pred cchhhhcCCCCCCHHHHHHHHHHHHH
Q psy8867 66 RDIELWKNPIGLTEEERRLVKRNLGF 91 (355)
Q Consensus 66 ~D~~dw~~~~~Ls~~Er~~~~~~l~~ 91 (355)
+.+.+|. .|++++|..+...+..
T Consensus 25 dEI~~W~---~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 25 DEIRDWK---SMSDDERRAILARLRA 47 (51)
T ss_pred HHHHHHh---hCCHHHHHHHHHHHHH
Confidence 4578999 9999999988876653
No 83
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=28.78 E-value=2.9e+02 Score=22.26 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhh
Q psy8867 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME 251 (355)
Q Consensus 213 ~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e 251 (355)
.++..-.-|.+.+++..++.+|..|..+...++..+...
T Consensus 19 ~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~ 57 (125)
T cd01044 19 KLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 344444457799999999999999999988888776544
No 84
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=28.66 E-value=3.2e+02 Score=25.42 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHH
Q psy8867 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249 (355)
Q Consensus 185 ~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~ 249 (355)
.+..+..++++-..+|++.--..-..+. ..=--|.........+-.|++|....++++..+.
T Consensus 52 e~~~~~~~l~~~~~~D~~v~~~l~~~i~---~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~ 113 (281)
T PF00268_consen 52 EREAYKRILAFFAQLDSLVSENLLPNIM---PEITSPEIRAFLTFQAFMEAIHAESYSYILDSLG 113 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHH---HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666667788877543322222 2112377888889999999999999999999987
No 85
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=27.58 E-value=1.1e+02 Score=24.84 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=44.9
Q ss_pred cchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy8867 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPK 285 (355)
Q Consensus 221 ~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~ 285 (355)
|++.+++.|=.+|=+ .=....++.+.+++=..+.+.+++++.++=+-+-++| .|+|+++++
T Consensus 67 ~v~sqg~EyQt~eps---eEPik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE-~WLDalLge 127 (135)
T PF15466_consen 67 PVASQGFEYQTKEPS---EEPIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLE-EWLDALLGE 127 (135)
T ss_pred cccccccccccCCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCC
Confidence 677788887666644 3346788888888877788888888888665555554 699998876
No 86
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=27.46 E-value=3.7e+02 Score=22.50 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=44.7
Q ss_pred hcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcccc---HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8867 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT---TEFCKEIEQLFLKAIELEYYYAEDT 282 (355)
Q Consensus 216 ~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~---~~~~~~i~~l~~~ave~E~~~~~~~ 282 (355)
..--++|++......+.||.-|..-.+.-+..+-.. |.... .+....+.++++.+++.|...++.+
T Consensus 33 ~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~-p~~~~i~~~~~~~~~~e~l~~~l~~E~~~~~~~ 101 (157)
T TIGR00754 33 KNWGLKELADHEYHESIDEMKHADEIIERILFLEGL-PNLQDLGKLRIGETVREMLEADLALELDVLNRL 101 (157)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344599999999999999999988766655554332 22110 0112456688999999988877543
No 87
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.74 E-value=4.6e+02 Score=25.33 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchH-HHHHHHHhchhhHHh
Q psy8867 199 MEGLFFYVGFVQILALGRQNKMIGSS-ELYQYILRDESMHCN 239 (355)
Q Consensus 199 lEgi~f~sgF~~~~~l~~~g~l~g~~-~~i~~I~RDE~~H~~ 239 (355)
.|.|.-|+||+-+--.-.-.++||.. .+++.|.|--.+-..
T Consensus 126 ke~irryggfygptcvvdfal~pgstsnvvnrilk~~dip~e 167 (500)
T COG4883 126 KESIRRYGGFYGPTCVVDFALVPGSTSNVVNRILKKMDIPVE 167 (500)
T ss_pred HHHHHHhcCccCCceEEEEEecCCchHHHHHHHHHhcCCcHH
Confidence 59999999998553333446789864 566777776554443
No 88
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=25.40 E-value=72 Score=25.39 Aligned_cols=60 Identities=28% Similarity=0.558 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHH-------------HHHHHHCCCCCCCC--CCCCcc--hHHHhcccc-cccCCCccccccccc
Q psy8867 286 GILGLNVKTFKSYLRFIA-------------NCRMKQIGIKQIFP--YERNPF--PWMSEMIHI-KKESNFFETRVMEYQ 347 (355)
Q Consensus 286 ~i~Gl~~~~~~~yv~y~a-------------n~~L~~lG~~~~f~--~~~nP~--~w~~~~~~~-~~~~nFFe~~~t~Y~ 347 (355)
||+|+ +...+.|+.|.. .+||+.+|+.+.|- .-.|-+ || ..++.- --..+||.-+..+|.
T Consensus 4 giigl-kkmidSYnDy~~~ev~vkHknRVyThKRLedmgfsK~fmrFiLaNafiPpy-rkyihKiiLNEryFtFkf~ayL 81 (131)
T PF06556_consen 4 GIIGL-KKMIDSYNDYCLSEVGVKHKNRVYTHKRLEDMGFSKCFMRFILANAFIPPY-RKYIHKIILNERYFTFKFNAYL 81 (131)
T ss_pred ceeeH-HHHHHHHHHHHhhhhceeecceeeehhhHHHcCCCcceEEEEeecccCCcH-HHHHHHHhhccceEEEehhhhh
Confidence 46666 366666766654 37999999999761 223432 44 233321 124478887777774
No 89
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=23.70 E-value=1.9e+02 Score=21.88 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHH---hhhHhhhchHHhHhhcCChHHHHHH
Q psy8867 76 GLTEEERRLVKRNLGFFST---ADSLAANNIVLGTYRHITAPECRQY 119 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~---~Ds~v~~~l~~~l~~~~~~~E~~~~ 119 (355)
.||+.||..+.+.|.-+-. .|+++ ..+.+..-+|+-+..
T Consensus 15 lLt~~ER~~i~qaL~~y~~~Rnvd~Li-----~~v~pVLDtPaK~~i 56 (80)
T cd07355 15 LLTPPERYGIKKALEDYFQHRNIDTLI-----VDVYPVLDTPAKQVI 56 (80)
T ss_pred hCCHHHHHHHHHHHHHHHHhccHHHHH-----hhhhhhcCCHHHHHH
Confidence 5999999999998865532 23332 234445556655443
No 90
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=22.87 E-value=4.7e+02 Score=22.17 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHH
Q psy8867 82 RRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDK 161 (355)
Q Consensus 82 r~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k 161 (355)
++.|..-|.-...++.-..+ ..+.+...+++|+.+..+.....+---|.+--..+++.++.++... ..+.+..-
T Consensus 3 ~~~~~~~L~d~y~aE~q~~~-~l~~~~~~a~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~-----~c~~~~gl 76 (159)
T PF05974_consen 3 RDLFIDELRDLYSAEKQLLK-ALPKLAEAASSPELKAALEEHLEETEQQIERLEQIFEALGADPSAE-----KCDAMEGL 76 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CH-----H-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccC-----cchHHHHH
Confidence 45667777777777744434 4456888999999999998888888999999999999999776421 22333333
Q ss_pred HHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHH
Q psy8867 162 DEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241 (355)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~ 241 (355)
+.-....+.... .++...+ -.+++-+..+|-.- .++|-.+..++++-=.+..++..+.+..+|.-+-..-
T Consensus 77 ~~e~~~~~~~~~-------~d~~~~D--~~li~a~q~~ehye-IA~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L 146 (159)
T PF05974_consen 77 VAEAQELIEEFA-------EDPAVKD--AALIAAAQKVEHYE-IAAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKL 146 (159)
T ss_dssp HHHHHHHHHT-S--------SHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-------CCchHhh--HHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222210 0111111 12222244556633 3677777777766334566666666666665554443
Q ss_pred HH
Q psy8867 242 ID 243 (355)
Q Consensus 242 ~~ 243 (355)
..
T Consensus 147 ~~ 148 (159)
T PF05974_consen 147 TQ 148 (159)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 91
>PRK15022 ferritin-like protein; Provisional
Probab=22.62 E-value=5.1e+02 Score=22.44 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=44.3
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh--hCCccccH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8867 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM--ENPNLWTT-EFCKEIEQLFLKAIELEYYYAEDTM 283 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~--e~~~~~~~-~~~~~i~~l~~~ave~E~~~~~~~~ 283 (355)
.|+...| +||++.-+..=+..|.-|..-....++.--. ..+.+-.. .--.-+.+++..++++|+.....+.
T Consensus 29 ~~~~~~~-L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~~~~s~~e~fe~al~hEk~vt~~I~ 102 (167)
T PRK15022 29 EWCSEQS-LNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGEKLNSLEELFQKTLEEYEQRSSTLA 102 (167)
T ss_pred HHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 9999999999999999998754444332211 11111000 0113466888888888887766544
No 92
>KOG3316|consensus
Probab=21.84 E-value=99 Score=26.46 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCCccchHHHHHHHHhc
Q psy8867 197 CIMEGLFFYVGFVQIL-ALGRQNKMIGSSELYQYILRD 233 (355)
Q Consensus 197 ~~lEgi~f~sgF~~~~-~l~~~g~l~g~~~~i~~I~RD 233 (355)
.-+|+|-|-.|....= ....++++.-.-+++++|+||
T Consensus 39 ~~LE~IGFqVG~~L~Erl~~e~~rf~deLeimKFiCkD 76 (163)
T KOG3316|consen 39 ARLESIGFQVGRKLSERLTRERNRFKDELEIMKFICKD 76 (163)
T ss_pred HHHHHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3579999999999884 555678999999999999998
No 93
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=20.60 E-value=4.9e+02 Score=21.49 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=67.0
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHH
Q psy8867 109 RHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188 (355)
Q Consensus 109 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~ 188 (355)
..-..|.+..++..++.+|..|++.+...+..++..+. +..+...+. ++ .+....
T Consensus 30 ~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~--~~~~~~~~~-----~~------------------~~~~~~ 84 (156)
T cd01055 30 DSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVE--LPAIEAPPS-----EF------------------ESLLEV 84 (156)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCee--CCCCCCCCc-----cc------------------CCHHHH
Confidence 34467888999999999999999999988887764332 111111000 00 000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8867 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 189 ~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
++. +.-.|-- .-..+.-+...++...-+.+++.++++..||.-|......++..+..
T Consensus 85 l~~----al~~E~~-~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~~ 141 (156)
T cd01055 85 FEA----ALEHEQK-VTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLKL 141 (156)
T ss_pred HHH----HHHHHHH-HHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112322 22233333445555556999999999999999999887777776664
No 94
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=20.54 E-value=1.2e+02 Score=28.48 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=53.4
Q ss_pred hcCCCCCcccccccchh-hhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHH
Q psy8867 53 CANHWMPQEINMQRDIE-LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 131 (355)
Q Consensus 53 ~~~fW~p~Ei~l~~D~~-dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~ 131 (355)
..+=|+..-|.-+.|+- |+.. ++. ++ .+++.....++....+|.++-.+++-+..|.+|+
T Consensus 119 ~G~pWta~YI~~sGnliaDlr~--Nia----------------aE-~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~ 179 (277)
T COG3546 119 AGVPWTAAYIVASGNLIADLRS--NIA----------------AE-ARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQ 179 (277)
T ss_pred CCCccchhhhhccCccHHHHHH--HHH----------------HH-hccceeeeeeeecCCCccHHHHHHHHHHHHHHHH
Confidence 45778888888777653 5542 221 12 3344444567788899999999999999999999
Q ss_pred HHHHHHHHHhCC
Q psy8867 132 HAYQYIVESLGL 143 (355)
Q Consensus 132 ~sYs~il~~l~~ 143 (355)
.+|..-|+++..
T Consensus 180 ~~f~kAL~~l~~ 191 (277)
T COG3546 180 NAFRKALESLEN 191 (277)
T ss_pred HHHHHHHHHHHh
Confidence 999999998853
No 95
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=20.10 E-value=7e+02 Score=23.05 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8867 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 185 ~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
.+...+.++++-..+|++.--..-..+.... --|-........+-+|++|+...++++..+..
T Consensus 44 er~~~~~~la~~~~~d~~v~~~~~~~~~~~~---~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~ 106 (288)
T cd01049 44 ERHFIKRVLAFLAALDSIVGENLVELFSRHV---QIPEARAFYGFQAFMENIHSESYSYILDTLGK 106 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445666666666778875433322222211 24777888889999999999999999998875
Done!