BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8868
(355 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340789059|ref|YP_004754524.1| ribonucleotide reductase of class Ia (aerobic) subunit beta
[Collimonas fungivorans Ter331]
gi|340554326|gb|AEK63701.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Collimonas fungivorans Ter331]
Length = 389
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 280/342 (81%), Positives = 308/342 (90%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
++ R+N +K+IINGHTDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDIELWKN
Sbjct: 48 VDVTHRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKN 107
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA
Sbjct: 108 PNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 167
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVESLGLDE EIFNAYHE+KSIRDKDEFLIPFI+ LTD +FKTG T+NDQKLL+SLI
Sbjct: 168 YQYIVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPEFKTGTTENDQKLLRSLI 227
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFACIMEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINTIKMENP
Sbjct: 228 VFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKMENP 287
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+LWT EF EI+ LFL A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +QIG+
Sbjct: 288 HLWTPEFRDEIKALFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLD 347
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L+WE
Sbjct: 348 PMFPQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 389
>gi|300309722|ref|YP_003773814.1| ribonucleoside reductase small subunit [Herbaspirillum seropedicae
SmR1]
gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein
[Herbaspirillum seropedicae SmR1]
Length = 388
Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust.
Identities = 279/343 (81%), Positives = 309/343 (90%)
Query: 13 KINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWK 72
++++ R+N +K+IINGHTDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDIELWK
Sbjct: 46 QVDTTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK 105
Query: 73 NPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 132
NP GLTE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH
Sbjct: 106 NPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 165
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192
AYQYIVESLGLDE EIFNAYHE+ SIRDKDEFLIPFID LTD +FKTG +NDQKLLKSL
Sbjct: 166 AYQYIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSL 225
Query: 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN 252
IVFACIMEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINT+KMEN
Sbjct: 226 IVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMEN 285
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
P+LWT EF +EI+ LFL+A+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG+
Sbjct: 286 PHLWTPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGL 345
Query: 313 KQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 346 DPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388
>gi|399018404|ref|ZP_10720583.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. CF444]
gi|398101520|gb|EJL91736.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. CF444]
Length = 401
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 280/347 (80%), Positives = 308/347 (88%)
Query: 9 KKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDI 68
K ++ R+N +K+IINGHTDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDI
Sbjct: 55 KDEAPVDVTSRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDI 114
Query: 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 128
ELWKNP GLTE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA
Sbjct: 115 ELWKNPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 174
Query: 129 IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188
IHTHAYQYIVESLGLDE EIFNAYHE+KSIRDKDEFLIPFI+ LTD +FKTG T+NDQKL
Sbjct: 175 IHTHAYQYIVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPEFKTGTTENDQKL 234
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
LKSLIVFACIMEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINT+
Sbjct: 235 LKSLIVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTV 294
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
KMENP+LWT EF EI+ LFL A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +
Sbjct: 295 KMENPHLWTPEFRNEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQ 354
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
QIG+ +F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L+WE
Sbjct: 355 QIGLDPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 401
>gi|415955519|ref|ZP_11557457.1| Ribonucleoside-diphosphate reductase subunit beta [Herbaspirillum
frisingense GSF30]
gi|407757021|gb|EKF67092.1| Ribonucleoside-diphosphate reductase subunit beta [Herbaspirillum
frisingense GSF30]
Length = 368
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 279/346 (80%), Positives = 308/346 (89%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
K +++ R+N +K+IINGHTDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDIE
Sbjct: 23 KADAVDTTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIE 82
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
LWKNP GLTE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI
Sbjct: 83 LWKNPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 142
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HTHAYQYIVESLGLDE EIFNAYHE+ SIRDKDEFLIPFID LTD +FKTG +NDQKLL
Sbjct: 143 HTHAYQYIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLL 202
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249
KSLIVFACIMEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINT+K
Sbjct: 203 KSLIVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVK 262
Query: 250 MENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQ 309
MENP+LWT EF +EI+ LFL+A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +Q
Sbjct: 263 MENPHLWTPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNATMFKGYLRFIANRRAQQ 322
Query: 310 IGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IG+ +F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 323 IGLDPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 368
>gi|409408951|ref|ZP_11257386.1| transmembrane ribonucleoside reductase small subunit
[Herbaspirillum sp. GW103]
gi|386432273|gb|EIJ45101.1| transmembrane ribonucleoside reductase small subunit
[Herbaspirillum sp. GW103]
Length = 388
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 278/343 (81%), Positives = 307/343 (89%)
Query: 13 KINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWK 72
++++ R+N +K+IINGHTDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDIELWK
Sbjct: 46 QVDTTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK 105
Query: 73 NPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 132
NP GLTE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH
Sbjct: 106 NPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 165
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192
AYQYIVESLGLDE EIFNAYHE+ SIRDKDEFLIPFID LTD +FKTG +NDQKLLKSL
Sbjct: 166 AYQYIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSL 225
Query: 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN 252
IVFACIMEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINT+KMEN
Sbjct: 226 IVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMEN 285
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
P+LWT EF EI+ LFL+A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +QIG+
Sbjct: 286 PHLWTPEFRDEIKSLFLRAVELEYRYAEDTMPRGVLGLNATMFKGYLRFIANRRAQQIGL 345
Query: 313 KQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 346 DPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388
>gi|398835459|ref|ZP_10592821.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. YR522]
gi|398216245|gb|EJN02798.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. YR522]
Length = 379
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/342 (80%), Positives = 305/342 (89%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
+++ R+N +K+IINGHTDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDIELWK+
Sbjct: 38 VDTTMRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKS 97
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA
Sbjct: 98 PNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 157
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVESLGLDE EIFNAYHE+KSIRDKDEFLIPFI+ LTD F TG T+NDQKLLKSLI
Sbjct: 158 YQYIVESLGLDEGEIFNAYHEVKSIRDKDEFLIPFINTLTDPAFTTGTTENDQKLLKSLI 217
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFACIMEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINT+KMENP
Sbjct: 218 VFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENP 277
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+LWT EF EI+ LFL A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +QIG+
Sbjct: 278 HLWTPEFRDEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLD 337
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 338 PLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 379
>gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Oxalobacteraceae bacterium IMCC9480]
gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Oxalobacteraceae bacterium IMCC9480]
Length = 416
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/343 (79%), Positives = 303/343 (88%)
Query: 13 KINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWK 72
K + R+N +K+IING+TDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDIELWK
Sbjct: 74 KADPARRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK 133
Query: 73 NPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 132
+P GLT++ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH
Sbjct: 134 SPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 193
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192
AYQYI ESLGLDE EIFNAYHE+KSIRDKDEFLIPFID LTD F TG T NDQKLLKSL
Sbjct: 194 AYQYITESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLKSL 253
Query: 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN 252
IVF+C+MEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDL+NTIKMEN
Sbjct: 254 IVFSCLMEGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKMEN 313
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
P+LWT EF EI+ LFL A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +QIG+
Sbjct: 314 PHLWTPEFRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGL 373
Query: 313 KQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ +F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 374 EPMFENEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416
>gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas
arsenicoxydans]
gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Herminiimonas arsenicoxydans]
Length = 395
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 272/347 (78%), Positives = 307/347 (88%)
Query: 9 KKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDI 68
K ++ R++ +K+IING TDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDI
Sbjct: 49 KPAATVDPTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDI 108
Query: 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 128
ELWKNP GLT++ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA
Sbjct: 109 ELWKNPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 168
Query: 129 IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188
IHTHAYQYIVESLGLDE EIFNAY+EI+SIRDKD+FLIPFIDVLTD F TG T+NDQ L
Sbjct: 169 IHTHAYQYIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTL 228
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
L+SLIVFAC+MEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINTI
Sbjct: 229 LRSLIVFACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTI 288
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
K+ENP+LWT +F EI+ LFL+A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +
Sbjct: 289 KLENPHLWTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQ 348
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
QIG++ +F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L+WE
Sbjct: 349 QIGLEPMFEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395
>gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta
[Janthinobacterium sp. Marseille]
gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium
sp. Marseille]
Length = 392
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 270/347 (77%), Positives = 310/347 (89%)
Query: 9 KKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDI 68
K ++ R++ +K++ING TDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDI
Sbjct: 46 KDAAAVDPTRRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDI 105
Query: 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 128
ELWKNP GLT++ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA
Sbjct: 106 ELWKNPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 165
Query: 129 IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188
IHTHAYQYIVESLGLDE EIFNAY+E++SIRDKD+FLIPFI+ LTD +FKTG T+NDQKL
Sbjct: 166 IHTHAYQYIVESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKL 225
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
L+SLIVFAC+MEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINTI
Sbjct: 226 LRSLIVFACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTI 285
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
K+ENP+LWT +F +EI+ LFL+A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +
Sbjct: 286 KLENPHLWTPQFREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQ 345
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
QIG++ +F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L+WE
Sbjct: 346 QIGLEPMFEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392
>gi|395763948|ref|ZP_10444617.1| ribonucleotide-diphosphate reductase subunit beta
[Janthinobacterium lividum PAMC 25724]
Length = 383
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 272/337 (80%), Positives = 302/337 (89%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAWD+YL+ CANHWMPQE+NMQRDIELWKNP GLT
Sbjct: 47 RVNADDKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEVNMQRDIELWKNPNGLT 106
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 107 DDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 166
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E+KSIRDKDEFLIPFI+ LTD F TG +NDQKLLKSLIVFAC+
Sbjct: 167 ESLGLDESEIFNAYNEVKSIRDKDEFLIPFINTLTDPAFVTGTVENDQKLLKSLIVFACL 226
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINTIKMENP LWT
Sbjct: 227 MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKMENPLLWTA 286
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI+ LF++A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +QIG++Q+F
Sbjct: 287 AFREEIKALFMQAVELEYAYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEQLFAQ 346
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV EYQ+GG L+WE
Sbjct: 347 EENPFPWMSEMIDMKKERNFFETRVTEYQTGGALNWE 383
>gi|445499257|ref|ZP_21466112.1| ribonucleoside-diphosphate reductase subunit beta
[Janthinobacterium sp. HH01]
gi|444789252|gb|ELX10800.1| ribonucleoside-diphosphate reductase subunit beta
[Janthinobacterium sp. HH01]
Length = 375
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 271/337 (80%), Positives = 301/337 (89%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAWD+YL+ CANHWMPQE+NMQRDIELWKNP GLT
Sbjct: 39 RVNADDKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEVNMQRDIELWKNPNGLT 98
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 99 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 158
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E+KSIRDKDEFLIPFI+ LTD F TG +DQ+LLKSLIVFAC+
Sbjct: 159 ESLGLDEGEIFNAYNEVKSIRDKDEFLIPFINTLTDPAFTTGTVHSDQQLLKSLIVFACL 218
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINTIKMENP LWT
Sbjct: 219 MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKMENPLLWTP 278
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI+QLFLKA++LEY YAEDTMP+G+LGLN FK YLRFIAN R QIG++ +F
Sbjct: 279 AFKEEIKQLFLKAVDLEYAYAEDTMPRGVLGLNATMFKGYLRFIANRRATQIGLETLFDQ 338
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L+W+
Sbjct: 339 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWD 375
>gi|427400631|ref|ZP_18891869.1| hypothetical protein HMPREF9710_01465 [Massilia timonae CCUG 45783]
gi|425720144|gb|EKU83067.1| hypothetical protein HMPREF9710_01465 [Massilia timonae CCUG 45783]
Length = 367
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 271/338 (80%), Positives = 301/338 (89%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+N +K+IING TDVNQLVPFKY WAWD+YL+ CANHWMPQE+NMQRDIELWKNP GL
Sbjct: 30 KRVNADDKRIINGETDVNQLVPFKYKWAWDKYLAGCANHWMPQEVNMQRDIELWKNPNGL 89
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+E+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI
Sbjct: 90 SEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 149
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFNAY+EI+SI DKD+FLIPFIDVLT+ FKTG +NDQKLLKS+IVFAC
Sbjct: 150 VESLGLDEGEIFNAYNEIESIHDKDQFLIPFIDVLTNPDFKTGTVENDQKLLKSIIVFAC 209
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMH NFGIDLINTIKMENP LWT
Sbjct: 210 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHVNFGIDLINTIKMENPQLWT 269
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF EI+ LFL+A++LEY YAEDTMP+G+LGLN FK YLRFIAN R QIG++ +FP
Sbjct: 270 PEFRDEIKALFLQAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAVQIGLEPLFP 329
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV EYQ+GGTL W+
Sbjct: 330 NEENPFPWMSEMIDLKKERNFFETRVTEYQTGGTLSWD 367
>gi|430808367|ref|ZP_19435482.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus sp.
HMR-1]
gi|429499278|gb|EKZ97716.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus sp.
HMR-1]
Length = 395
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 301/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 45 LGNNPNAAAAQSTRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 104
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 105 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 164
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 165 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 224
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 225 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 284
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 285 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 344
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG++Q+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 345 RRCQQIGLEQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395
>gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
eutropha H16]
gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia
eutropha H16]
Length = 395
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 301/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L + S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 45 LGDNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 104
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 105 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 164
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 165 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 224
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 225 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 284
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 285 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 344
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ Q+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 345 RRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395
>gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
eutropha JMP134]
gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
Length = 394
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 300/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 44 LGNNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 103
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI WK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 104 SRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 163
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 164 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 223
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 224 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 283
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 284 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 343
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ Q+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 344 RRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394
>gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
metallidurans CH34]
gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus
metallidurans CH34]
Length = 395
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 300/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 45 LGNNPNAAAAQSTRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 104
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 105 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 164
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 165 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 224
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 225 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 284
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 285 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 344
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ Q+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 345 RRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395
>gi|393778162|ref|ZP_10366444.1| ribonucleoside diphosphate reductase subunit beta [Ralstonia sp.
PBA]
gi|392714897|gb|EIZ02489.1| ribonucleoside diphosphate reductase subunit beta [Ralstonia sp.
PBA]
Length = 410
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/351 (76%), Positives = 300/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L + S R+N +K++IN TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 60 LGTHANAIGAQSTRRVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 119
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQA
Sbjct: 120 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 179
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFIDVLTD FKTG +
Sbjct: 180 FEEAIHTHAYQYIVESLGLEEGEIFNAYHEVQSIRDKDEFLIPFIDVLTDPSFKTGTPET 239
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQ+LLKSLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDL
Sbjct: 240 DQQLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 299
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
INTIK ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 300 INTIKSENPHLWTPEFKDEIRELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 359
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 360 RRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 410
>gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
taiwanensis LMG 19424]
gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Cupriavidus taiwanensis LMG 19424]
Length = 396
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/351 (76%), Positives = 301/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 46 LGNNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 105
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 106 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 165
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 166 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 225
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 226 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 285
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 286 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 345
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ Q+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 346 RRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396
>gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase subunit beta [Ralstonia
solanacearum CFBP2957]
gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum CFBP2957]
Length = 402
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/351 (76%), Positives = 301/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 52 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 111
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 112 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 171
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGLDE EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 172 FEEAIHTHAYQYIVESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 231
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 232 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 291
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 292 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 351
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG++ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 352 RRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402
>gi|421890693|ref|ZP_16321544.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum K60-1]
gi|378963960|emb|CCF98292.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum K60-1]
Length = 406
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 301/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 56 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 115
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 116 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 175
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 176 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 235
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 236 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 295
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 296 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 355
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG++ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 356 RRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 406
>gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
solanacearum UW551]
gi|421895460|ref|ZP_16325861.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum MolK2]
gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
solanacearum UW551]
gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum MolK2]
Length = 402
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 301/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 52 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 111
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 112 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 171
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 172 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 231
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 232 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 291
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 292 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 351
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG++ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 352 RRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402
>gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum IPO1609]
gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum IPO1609]
Length = 410
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 301/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 60 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 119
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 120 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 179
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 180 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 239
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 240 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 299
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 300 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 359
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG++ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 360 RRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 410
>gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum PSI07]
gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum PSI07]
gi|344169191|emb|CCA81514.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[blood disease bacterium R229]
Length = 402
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 299/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 52 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 111
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 112 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 171
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 172 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 231
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 232 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 291
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 292 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 351
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 352 RRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402
>gi|334129417|ref|ZP_08503222.1| Ribonucleoside-diphosphate reductase beta subunit
[Methyloversatilis universalis FAM5]
gi|333445643|gb|EGK73584.1| Ribonucleoside-diphosphate reductase beta subunit
[Methyloversatilis universalis FAM5]
Length = 383
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/337 (78%), Positives = 299/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NMQRDIELWK+P GLT
Sbjct: 47 RIRAEDKRVINGGTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMQRDIELWKSPNGLT 106
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V+RNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 107 EDERRVVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 166
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAYHE+ SIRDKDEFLIPFIDVLTD FKTG + DQ+LLKSLIVFAC+
Sbjct: 167 ESLGLDEGEVFNAYHEVASIRDKDEFLIPFIDVLTDPAFKTGTPEADQQLLKSLIVFACL 226
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 227 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTP 286
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E++ LF KA+ELEY YAEDTMP+G+LGLN FK YLRFIAN R +QIG+ ++P
Sbjct: 287 EFREELKALFRKAVELEYRYAEDTMPRGVLGLNANMFKEYLRFIANRRAQQIGLDVLYPG 346
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 347 AENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 383
>gi|416979247|ref|ZP_11937832.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
TJI49]
gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
TJI49]
Length = 403
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/341 (78%), Positives = 296/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|386332373|ref|YP_006028542.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum Po82]
gi|334194821|gb|AEG68006.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum Po82]
Length = 402
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 300/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 52 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 111
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 112 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 171
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 172 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 231
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 232 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 291
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA+ LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 292 INQIKLENPHLWTAEFKAEITELFKKAVGLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 351
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG++ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 352 RRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402
>gi|344172465|emb|CCA85108.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia syzygii R24]
Length = 402
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/351 (75%), Positives = 299/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 52 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 111
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 112 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 171
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 172 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 231
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 232 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 291
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 292 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 351
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 352 RRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402
>gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
pickettii 12J]
gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J]
Length = 402
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/351 (75%), Positives = 298/351 (84%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 52 LGNNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 111
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI WK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 112 SRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 171
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 172 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 231
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 232 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 291
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 292 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 351
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 352 RRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402
>gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
solanacearum GMI1000]
gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain)
oxidoreductase protein [Ralstonia solanacearum GMI1000]
Length = 400
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/351 (75%), Positives = 299/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 50 LGNNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 109
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 110 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 169
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 170 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 229
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 230 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 289
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 290 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 349
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 350 RRCQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400
>gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum CMR15]
Length = 398
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/351 (75%), Positives = 299/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 48 LGNNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 107
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 108 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 167
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 168 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 227
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 228 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 287
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 288 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 347
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 348 RRCQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 398
>gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
multivorans ATCC 17616]
gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC
17616]
Length = 396
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/341 (78%), Positives = 295/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 56 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 115
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 116 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 175
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 176 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 235
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 236 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 295
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+
Sbjct: 296 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDP 355
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 356 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396
>gi|429462958|ref|YP_007184421.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811738|ref|YP_007448193.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338472|gb|AFZ82895.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776896|gb|AGF47895.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 357
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/351 (76%), Positives = 307/351 (87%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L + K T I R+N + K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM
Sbjct: 7 LIDDKTTSSIQQNGRVNVLEKRIINGKTDVNQLVPFKYKWAWEKYLNTCANHWMPQEVNM 66
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWKNP GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQA
Sbjct: 67 SRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 126
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTH+YQYIVESLGLDE EIFNAYHEI+SI+ KDEFLIPFID+++D FKTG ++
Sbjct: 127 FEEAIHTHSYQYIVESLGLDESEIFNAYHEIESIKAKDEFLIPFIDLISDSNFKTGTLES 186
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQ LLKSLIVFAC+MEGLFFYVGFVQIL+LGRQNKM G++E Y YILRDESMHCNFGIDL
Sbjct: 187 DQNLLKSLIVFACLMEGLFFYVGFVQILSLGRQNKMTGAAEQYMYILRDESMHCNFGIDL 246
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
INTIK+ENP+LWTTEF +EI LF KA+ELEY YAEDTMP+GILGLN FKSYLRFIAN
Sbjct: 247 INTIKLENPHLWTTEFRQEITSLFEKAVELEYAYAEDTMPRGILGLNSSMFKSYLRFIAN 306
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG++ +F +E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 307 RRCQQIGLETLFDHEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 357
>gi|339327267|ref|YP_004686960.1| ribonucleoside-diphosphate reductase subunit beta [Cupriavidus
necator N-1]
gi|338167424|gb|AEI78479.1| ribonucleoside-diphosphate reductase subunit beta [Cupriavidus
necator N-1]
Length = 394
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/351 (75%), Positives = 299/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L + S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 44 LGDNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 103
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 104 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 163
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 164 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPEN 223
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 224 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 283
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N
Sbjct: 284 INQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICN 343
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ Q+F E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 344 RRCQQIGLDQLFANEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394
>gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia J2315]
gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
cenocepacia PC184]
gi|444364599|ref|ZP_21164889.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
cenocepacia BC7]
gi|444365877|ref|ZP_21165981.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
cenocepacia K56-2Valvano]
gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
cenocepacia PC184]
gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
cenocepacia J2315]
gi|443592688|gb|ELT61474.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
cenocepacia BC7]
gi|443605448|gb|ELT73302.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
cenocepacia K56-2Valvano]
Length = 403
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/337 (79%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIVFACI
Sbjct: 187 ESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+ +FP
Sbjct: 307 EFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLFPN 366
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|388566434|ref|ZP_10152879.1| ribonucleotide-diphosphate reductase subunit beta [Hydrogenophaga
sp. PBC]
gi|388266448|gb|EIK91993.1| ribonucleotide-diphosphate reductase subunit beta [Hydrogenophaga
sp. PBC]
Length = 394
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 264/337 (78%), Positives = 298/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RIN +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 58 RINVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIALWKDPNGLT 117
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 118 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 177
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D F TG +NDQ LLKSLIVFAC+
Sbjct: 178 ESLGLDEAEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPENDQTLLKSLIVFACL 237
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEG+FFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IKMENP LWT+
Sbjct: 238 MEGMFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKMENPLLWTS 297
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI++LFLKA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++ +FP
Sbjct: 298 EFKAEIKELFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEPLFPN 357
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 394
>gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
gladioli BSR3]
gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
gladioli BSR3]
Length = 407
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/341 (78%), Positives = 296/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S ER+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 67 GSQERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 126
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 127 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 186
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE E+FNAYHEI SIRDKDEFLIPFI LTD F TG + DQKLLKSLIV
Sbjct: 187 QYIVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQKLLKSLIV 246
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 247 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 306
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF A+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG+
Sbjct: 307 LWTPEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLDA 366
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 367 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407
>gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
pickettii 12D]
gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
5_7_47FAA]
gi|404397126|ref|ZP_10988919.1| hypothetical protein HMPREF0989_00786 [Ralstonia sp. 5_2_56FAA]
gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
5_7_47FAA]
gi|348610687|gb|EGY60373.1| hypothetical protein HMPREF0989_00786 [Ralstonia sp. 5_2_56FAA]
Length = 402
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 264/337 (78%), Positives = 296/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 66 RVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 125
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 126 EDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYIV 185
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +NDQKLLKSLIVFACI
Sbjct: 186 ESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFACI 245
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDLIN IK+ENP+LWT
Sbjct: 246 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWTA 305
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N R +QIG+ +FP
Sbjct: 306 EFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFPN 365
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 366 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402
>gi|421749406|ref|ZP_16186849.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Cupriavidus necator HPC(L)]
gi|409771736|gb|EKN53945.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Cupriavidus necator HPC(L)]
Length = 358
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 299/351 (85%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L N S R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM
Sbjct: 8 LGNNPNAAAAQSTRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 67
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQA
Sbjct: 68 SRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQA 127
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGL+E EIFNAYHE+ SIRDKDEFLIPFID LTD FKTG +N
Sbjct: 128 FEEAIHTHAYQYIVESLGLNEAEIFNAYHEVPSIRDKDEFLIPFIDTLTDPSFKTGTPEN 187
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLLKSLIVFACIMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDL
Sbjct: 188 DQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDL 247
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT EF +EI LF KA++LEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 248 INQIKLENPHLWTAEFKEEIVGLFRKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICN 307
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 308 RRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 358
>gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
IOP40-10]
gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
IOP40-10]
Length = 403
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/341 (78%), Positives = 296/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
383]
gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
Length = 403
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/341 (78%), Positives = 296/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
glumae BGR1]
gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase subunit beta [Burkholderia
glumae BGR1]
Length = 407
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/338 (78%), Positives = 295/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ER+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GL
Sbjct: 70 ERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 129
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+V+RNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 130 TEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 189
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFNAYHE+ SIRDKDEFLIPFI LTD F TG DQKLLKSLIVFAC
Sbjct: 190 VESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFAC 249
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 250 IMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWT 309
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG+ ++P
Sbjct: 310 PEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLYP 369
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 370 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407
>gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
ambifaria AMMD]
gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
ambifaria MC40-6]
gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD]
gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
MC40-6]
Length = 403
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/341 (78%), Positives = 296/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
multivorans ATCC 17616]
gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD1]
gi|421476080|ref|ZP_15923996.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CF2]
gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
multivorans ATCC 17616]
gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD1]
gi|400229001|gb|EJO58880.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CF2]
Length = 403
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/341 (78%), Positives = 295/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|402567671|ref|YP_006617016.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cepacia GG4]
gi|402248868|gb|AFQ49322.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cepacia GG4]
Length = 403
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/341 (78%), Positives = 296/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
Length = 403
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/341 (78%), Positives = 296/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia MC0-3]
gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
MC0-3]
Length = 403
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/337 (78%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIVFACI
Sbjct: 187 ESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+ ++P
Sbjct: 307 EFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLYPN 366
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis E264]
gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
thailandensis E264]
Length = 377
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/345 (77%), Positives = 297/345 (86%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 33 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 92
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 93 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 152
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLK
Sbjct: 153 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 212
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 213 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 272
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 273 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 332
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 333 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377
>gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
dolosa AUO158]
gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
dolosa AUO158]
Length = 403
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/341 (78%), Positives = 295/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+
Sbjct: 303 LWTPEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|374370403|ref|ZP_09628407.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
basilensis OR16]
gi|373098055|gb|EHP39172.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
basilensis OR16]
Length = 400
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 264/337 (78%), Positives = 298/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 64 RVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 123
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF TADSLAANNIVLGTYR ITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 124 EDERRVIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYIV 183
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +NDQKLLKSLIVFACI
Sbjct: 184 ESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPAFKTGTPENDQKLLKSLIVFACI 243
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDLIN IK+ENP+LWT
Sbjct: 244 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWTN 303
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI LF KA++LEY YAEDTMP+G+LGLN FK YLRFI N R +QIG++Q+FP
Sbjct: 304 EFKEEITALFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLEQLFPN 363
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 364 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400
>gi|420255798|ref|ZP_14758674.1| ribonucleotide reductase, beta subunit [Burkholderia sp. BT03]
gi|398044511|gb|EJL37329.1| ribonucleotide reductase, beta subunit [Burkholderia sp. BT03]
Length = 411
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 266/342 (77%), Positives = 296/342 (86%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
+ S R+N +K+IING TDVNQLVPFKY WAW++YLS CANHWMPQEINM RDI LWK+
Sbjct: 70 VASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKD 129
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHA
Sbjct: 130 PNGLTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 189
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVESLGLDE EIFNAYHE++SIR KDEFLIPFI LTD FKTG + DQKLLKSLI
Sbjct: 190 YQYIVESLGLDEGEIFNAYHEVESIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLI 249
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFAC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP
Sbjct: 250 VFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENP 309
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+LWT EF EI ++F A++LEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+
Sbjct: 310 HLWTAEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLD 369
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 370 PLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411
>gi|421867550|ref|ZP_16299208.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Burkholderia cenocepacia H111]
gi|358072488|emb|CCE50086.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Burkholderia cenocepacia H111]
Length = 372
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/337 (79%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 36 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 95
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 96 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 155
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIVFACI
Sbjct: 156 ESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 215
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 216 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 275
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+ +FP
Sbjct: 276 EFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLFPN 335
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 336 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372
>gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
oklahomensis EO147]
Length = 369
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/345 (77%), Positives = 297/345 (86%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLK
Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 204
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369
>gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia AU 1054]
gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia HI2424]
gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU
1054]
gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
HI2424]
Length = 382
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/337 (78%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 46 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 105
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 106 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 165
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIVFACI
Sbjct: 166 ESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 225
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 226 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 285
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+ ++P
Sbjct: 286 EFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLYPN 345
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 346 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 382
>gi|390576356|ref|ZP_10256426.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
terrae BS001]
gi|389931695|gb|EIM93753.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
terrae BS001]
Length = 407
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/342 (77%), Positives = 296/342 (86%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
+ S R+N +K+IING TDVNQLVPFKY WAW++YLS CANHWMPQEINM RDI LWK+
Sbjct: 66 VASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKD 125
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHA
Sbjct: 126 PNGLTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 185
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVESLGLDE EIFNAYHE++SIR KDEFLIPFI LTD FKTG + DQKLLKSLI
Sbjct: 186 YQYIVESLGLDEGEIFNAYHEVESIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLI 245
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFAC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP
Sbjct: 246 VFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENP 305
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+LWT EF EI ++F A++LEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+
Sbjct: 306 HLWTAEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLD 365
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 366 PLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407
>gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
phymatum STM815]
gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815]
Length = 407
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/340 (78%), Positives = 296/340 (87%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+N +K+IING TDVNQLVPFKY WAW++YLS CANHWMPQEINM RDI LWK+P
Sbjct: 68 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPN 127
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 128 GLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 187
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAYHE++SIRDKDEFLIPFI LTD FKTG + DQKLLKSLIVF
Sbjct: 188 YIVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVF 247
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+L
Sbjct: 248 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHL 307
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI ++F A++LEY YAEDTMP+G+LGLN FKSYLRFI N R +QIGI +
Sbjct: 308 WTPEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGIDPL 367
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 368 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407
>gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
vietnamiensis G4]
gi|387901273|ref|YP_006331612.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Burkholderia sp. KJ006]
gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis
G4]
gi|387576165|gb|AFJ84881.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Burkholderia sp. KJ006]
Length = 403
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/341 (78%), Positives = 295/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 63 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 122
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 123 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 183 QYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 242
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 243 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 302
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF A+ELEY YAEDTMP+G+LGLN FKSYLRFI+N R +QIG+
Sbjct: 303 LWTAEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDP 362
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 363 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium
197N]
gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium
197N]
Length = 394
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/341 (77%), Positives = 299/341 (87%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
N+ +R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP
Sbjct: 54 NTAQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 113
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 114 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 173
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESL LDE EIFNAY+E+ SIR KDEFLIPFID + D FKTG + DQ LLKSLIV
Sbjct: 174 QYIVESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIV 233
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FAC+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINTIK+ENP+
Sbjct: 234 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPH 293
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+
Sbjct: 294 LWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEP 353
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++P E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 354 LYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 394
>gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
pertussis Tohama I]
gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
parapertussis 12822]
gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
bronchiseptica RB50]
gi|384205221|ref|YP_005590960.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
pertussis CS]
gi|408416637|ref|YP_006627344.1| ribonucleoside-diphosphate reductase subunit beta [Bordetella
pertussis 18323]
gi|410421827|ref|YP_006902276.1| ribonucleoside-diphosphate reductase subunit beta [Bordetella
bronchiseptica MO149]
gi|410474443|ref|YP_006897724.1| ribonucleoside-diphosphate reductase subunit beta [Bordetella
parapertussis Bpp5]
gi|412341326|ref|YP_006970081.1| ribonucleoside-diphosphate reductase subunit beta [Bordetella
bronchiseptica 253]
gi|427816361|ref|ZP_18983425.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica 1289]
gi|427825136|ref|ZP_18992198.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica Bbr77]
gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
pertussis Tohama I]
gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
parapertussis]
gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica RB50]
gi|332383335|gb|AEE68182.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
pertussis CS]
gi|401778807|emb|CCJ64262.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
pertussis 18323]
gi|408444553|emb|CCJ51311.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
parapertussis Bpp5]
gi|408449122|emb|CCJ60809.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica MO149]
gi|408771160|emb|CCJ55959.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica 253]
gi|410567361|emb|CCN24932.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica 1289]
gi|410590401|emb|CCN05488.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica Bbr77]
Length = 398
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/337 (78%), Positives = 296/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GLT
Sbjct: 62 RVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGLT 121
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 122 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 181
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL LDE EIFNAY+E+ SIR KDEFLIPFID + D F TG + DQKLLKSLIVFAC+
Sbjct: 182 ESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQKLLKSLIVFACL 241
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINTIK+ENP+LWT
Sbjct: 242 MEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWTP 301
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ +FP
Sbjct: 302 EFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLFPQ 361
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 362 EENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398
>gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2M]
gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2]
gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2]
gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2M]
Length = 372
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/341 (78%), Positives = 295/341 (86%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P
Sbjct: 32 GSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDP 91
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 92 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 151
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIV
Sbjct: 152 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIV 211
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+
Sbjct: 212 FACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPH 271
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+
Sbjct: 272 LWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDP 331
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 332 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372
>gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
oklahomensis C6786]
Length = 369
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/345 (77%), Positives = 296/345 (85%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG DQKLLK
Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLK 204
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369
>gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp.
JS666]
gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
Length = 406
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 261/337 (77%), Positives = 298/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 70 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SI+DKD+FLIPFI+V++D FKTG T+ DQ LLKSLIVFAC+
Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFACL 249
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 250 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 309
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LFLKA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++ +FP
Sbjct: 310 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFPN 369
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 370 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406
>gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei SAVP1]
gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei NCTC 10229]
gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 668]
gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei NCTC 10247]
gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1106a]
gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 305]
gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei PRL-20]
gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei DM98]
gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 14]
gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 91]
gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei B7210]
gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 7894]
gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei NCTC 13177]
gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 112]
gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 576]
gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237813879|ref|YP_002898330.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei MSHR346]
gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei GB8 horse 4]
gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1106b]
gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei ATCC 10399]
gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei S13]
gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei FMH]
gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1710a]
gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 406e]
gi|386860431|ref|YP_006273380.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1026b]
gi|403520183|ref|YP_006654317.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei BPC006]
gi|418377769|ref|ZP_12965806.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 354a]
gi|418538894|ref|ZP_13104495.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1026a]
gi|418539664|ref|ZP_13105247.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1258a]
gi|418545914|ref|ZP_13111152.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1258b]
gi|418552365|ref|ZP_13117230.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 354e]
gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei SAVP1]
gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei NCTC 10229]
gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 668]
gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1106a]
gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei NCTC 10247]
gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 305]
gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei FMH]
gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 406e]
gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei ATCC 10399]
gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei S13]
gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 576]
gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei MSHR346]
gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei GB8 horse 4]
gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1106b]
gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei PRL-20]
gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1710a]
gi|385346575|gb|EIF53250.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1026a]
gi|385364109|gb|EIF69852.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1258a]
gi|385365932|gb|EIF71585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1258b]
gi|385373199|gb|EIF78265.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 354e]
gi|385378031|gb|EIF82549.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 354a]
gi|385657559|gb|AFI64982.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1026b]
gi|403075826|gb|AFR17406.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei BPC006]
Length = 403
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/345 (77%), Positives = 296/345 (85%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 59 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 118
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 119 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 178
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD F TG + DQKLLK
Sbjct: 179 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 238
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 239 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 298
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 299 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 358
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 359 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|421468902|ref|ZP_15917406.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans ATCC BAA-247]
gi|400230970|gb|EJO60705.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans ATCC BAA-247]
Length = 372
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/337 (79%), Positives = 294/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 36 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 95
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 96 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 155
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIVFACI
Sbjct: 156 ESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 215
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 216 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 275
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +LF +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +FP
Sbjct: 276 EFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLFPN 335
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 336 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372
>gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax
ferrireducens T118]
gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
T118]
Length = 400
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 263/355 (74%), Positives = 304/355 (85%), Gaps = 1/355 (0%)
Query: 1 MSIKLNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQ 60
+++ N + + I S R+N +K+IING TDVNQLVPFKY WAW++YLSSCANHWMPQ
Sbjct: 47 LAVTANQRGAAVSI-SPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQ 105
Query: 61 EINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYL 120
E+NM RDI LWK+P GLTE+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+L
Sbjct: 106 EVNMTRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFL 165
Query: 121 LRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTG 180
LRQAFEEAIHTHAYQYIVESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D FKTG
Sbjct: 166 LRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTG 225
Query: 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNF 240
+ DQ LLKSLIVFAC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNF
Sbjct: 226 THEADQTLLKSLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNF 285
Query: 241 GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLR 300
GIDLIN +K+ENP LWT+EF EI+ LF +A+ELEY YAEDTMP+G+LG+N FK YLR
Sbjct: 286 GIDLINQLKLENPQLWTSEFKAEIKALFEQAVELEYRYAEDTMPRGVLGMNASMFKGYLR 345
Query: 301 FIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+IAN R QIG++ +FP E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 346 YIANRRATQIGLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400
>gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis TXDOH]
gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis Bt4]
gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis E264]
Length = 350
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/345 (77%), Positives = 297/345 (86%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 6 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 65
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 66 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 125
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLK
Sbjct: 126 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 185
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 186 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 245
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 246 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 305
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 306 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350
>gi|427819865|ref|ZP_18986928.1| ribonucleoside-diphosphate reductase beta chain, partial
[Bordetella bronchiseptica D445]
gi|410570865|emb|CCN19066.1| ribonucleoside-diphosphate reductase beta chain, partial
[Bordetella bronchiseptica D445]
Length = 374
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/337 (78%), Positives = 296/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GLT
Sbjct: 38 RVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGLT 97
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 98 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 157
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL LDE EIFNAY+E+ SIR KDEFLIPFID + D F TG + DQKLLKSLIVFAC+
Sbjct: 158 ESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQKLLKSLIVFACL 217
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINTIK+ENP+LWT
Sbjct: 218 MEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWTP 277
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ +FP
Sbjct: 278 EFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLFPQ 337
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 338 EENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 374
>gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1710b]
gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei JHU]
gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
pseudomallei 1710b]
gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei JHU]
Length = 376
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/345 (77%), Positives = 296/345 (85%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 32 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 91
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 92 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 151
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD F TG + DQKLLK
Sbjct: 152 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 211
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 212 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 271
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 272 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 331
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 332 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 376
>gi|407940659|ref|YP_006856300.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
KKS102]
gi|407898453|gb|AFU47662.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
KKS102]
Length = 398
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 297/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 62 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 121
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 122 DDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 181
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D FKTG + DQ LLKSLIVFAC+
Sbjct: 182 ESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPSFKTGTPETDQTLLKSLIVFACL 241
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 242 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 301
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LFLKA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 302 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLFPN 361
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 362 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398
>gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter
hongkongensis HLHK9]
gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter
hongkongensis HLHK9]
Length = 357
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/337 (78%), Positives = 299/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N ++K+IING TDVNQLVPFKY+WAWD+YL++CANHWMPQE+NMQRDIELWK P GLT
Sbjct: 21 RVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQRDIELWKRPNGLT 80
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFF+TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 81 DDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 140
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAYHEI SIR KDEFLIPFID L D FKTG ++DQ LLKSLIVFACI
Sbjct: 141 ESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQLLLKSLIVFACI 200
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDLIN+IK ENP+LWT
Sbjct: 201 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINSIKQENPHLWTV 260
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ LF KAI+LEY YAEDTMP+G+LGLN FK YL FIAN RM+QIG++ +F +
Sbjct: 261 EFQEELYGLFRKAIDLEYAYAEDTMPRGVLGLNAAMFKEYLDFIANRRMQQIGLEPLFTH 320
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV EYQSGG LDW+
Sbjct: 321 VDNPFPWMSEMIDLKKEKNFFETRVTEYQSGGALDWD 357
>gi|424902825|ref|ZP_18326338.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
thailandensis MSMB43]
gi|390930698|gb|EIP88099.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
thailandensis MSMB43]
Length = 377
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/345 (76%), Positives = 296/345 (85%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 33 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 92
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 93 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 152
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ +IR KDEFLIPFI LTD F TG + DQKLLK
Sbjct: 153 THAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 212
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 213 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 272
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 273 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 332
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 333 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377
>gi|385208005|ref|ZP_10034873.1| ribonucleotide reductase, beta subunit [Burkholderia sp. Ch1-1]
gi|385180343|gb|EIF29619.1| ribonucleotide reductase, beta subunit [Burkholderia sp. Ch1-1]
Length = 415
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 263/351 (74%), Positives = 296/351 (84%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
+ N S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM
Sbjct: 65 VTNAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNM 124
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
RDI LWK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQA
Sbjct: 125 SRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 184
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIP+I VLTD FKTG +
Sbjct: 185 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEA 244
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQ LL+SLIVFAC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDL
Sbjct: 245 DQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 304
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP LWT EF EI ++F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N
Sbjct: 305 INQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICN 364
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ ++P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 365 RRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415
>gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris
marina MBIC11017]
gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris
marina MBIC11017]
Length = 384
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 262/337 (77%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RIN +K+IING TDVNQLVPFKY WAWD+YL+ CANHWMPQEINM RDI LWK GLT
Sbjct: 48 RINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALWKTTDGLT 107
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 108 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 167
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY E+ IR+KDEFLIPF++ LTD F+TG +NDQKLLKSLI F+C+
Sbjct: 168 ESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKSLIAFSCL 227
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDL+N IK ENP+LWT
Sbjct: 228 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLVNAIKQENPHLWTP 287
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EFC+EI LF +A+ELEY YAEDTMP+G+LGLN FKSYLR+IAN R +QIG+ IF
Sbjct: 288 EFCEEIRDLFKRAVELEYRYAEDTMPRGVLGLNASMFKSYLRYIANRRSQQIGLDPIFAS 347
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEM+ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 348 EENPFPWMSEMVDLKKERNFFETRVLEYQTGGALSWD 384
>gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 9]
gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei BCC215]
gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1655]
gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1655]
Length = 372
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/345 (77%), Positives = 296/345 (85%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 28 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 87
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 88 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 147
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD F TG + DQKLLK
Sbjct: 148 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 207
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 208 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 267
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 268 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 327
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 328 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372
>gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
phytofirmans PsJN]
gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans
PsJN]
Length = 415
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 262/340 (77%), Positives = 294/340 (86%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P
Sbjct: 76 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPN 135
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 136 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 195
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAYHE+ SIR KDEFLIP+I VLTD FKTG + DQ LL+SLIVF
Sbjct: 196 YIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVF 255
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP L
Sbjct: 256 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 315
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI ++F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +
Sbjct: 316 WTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPL 375
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 376 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415
>gi|421485726|ref|ZP_15933281.1| ribonucleotide-diphosphate reductase subunit beta [Achromobacter
piechaudii HLE]
gi|400196038|gb|EJO29019.1| ribonucleotide-diphosphate reductase subunit beta [Achromobacter
piechaudii HLE]
Length = 399
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 263/338 (77%), Positives = 297/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GL
Sbjct: 62 QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+E+ SIR KDEFLIPFID + D FKTG + DQ LLKSLIVFAC
Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFKTGTPEADQTLLKSLIVFAC 241
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ ++P
Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399
>gi|422322457|ref|ZP_16403498.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
xylosoxidans C54]
gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
xylosoxidans C54]
Length = 399
Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 263/338 (77%), Positives = 297/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GL
Sbjct: 62 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+E+ SIR KDEFLIPFID + D FKTG + DQ LLKSLIVFAC
Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ ++P
Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399
>gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
JS42]
gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
ebreus TPSY]
gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42]
gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY]
Length = 396
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 299/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ ++K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 60 RVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 119
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 120 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 179
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D +F TG ++DQ LLKSLIVFAC+
Sbjct: 180 ESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPESDQTLLKSLIVFACL 239
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 240 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 299
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LF+KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 300 EFKDEIKALFIKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFPN 359
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 360 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 396
>gi|423015516|ref|ZP_17006237.1| ribonucleotide-diphosphate reductase subunit beta [Achromobacter
xylosoxidans AXX-A]
gi|338781415|gb|EGP45805.1| ribonucleotide-diphosphate reductase subunit beta [Achromobacter
xylosoxidans AXX-A]
Length = 365
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/338 (77%), Positives = 297/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GL
Sbjct: 28 QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 87
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 88 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 147
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+E+ SIR KDEFLIPFID + D FKTG + DQ LLKSLIVFAC
Sbjct: 148 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 207
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 208 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 267
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ ++P
Sbjct: 268 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 327
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 328 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 365
>gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
xenovorans LB400]
gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
LB400]
Length = 411
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 262/340 (77%), Positives = 294/340 (86%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P
Sbjct: 72 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPN 131
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 132 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 191
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAYHE+ SIR KDEFLIP+I VLTD FKTG + DQ LL+SLIVF
Sbjct: 192 YIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVF 251
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP L
Sbjct: 252 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 311
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI ++F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +
Sbjct: 312 WTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPL 371
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 372 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411
>gi|359795993|ref|ZP_09298604.1| ribonucleotide-diphosphate reductase subunit beta [Achromobacter
arsenitoxydans SY8]
gi|359366036|gb|EHK67722.1| ribonucleotide-diphosphate reductase subunit beta [Achromobacter
arsenitoxydans SY8]
Length = 399
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/338 (77%), Positives = 297/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GL
Sbjct: 62 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+E+ SIR KDEFLIPFID + D FKTG + DQ LLKSLIVFAC
Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ ++P
Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399
>gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
xylosoxidans A8]
gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
xylosoxidans A8]
Length = 399
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/338 (77%), Positives = 297/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GL
Sbjct: 62 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+E+ SIR KDEFLIPFID + D FKTG + DQ LLKSLIVFAC
Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ ++P
Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399
>gi|383760080|ref|YP_005439066.1| ribonucleoside-diphosphate reductase, beta subunit NrdB [Rubrivivax
gelatinosus IL144]
gi|381380750|dbj|BAL97567.1| ribonucleoside-diphosphate reductase, beta subunit NrdB [Rubrivivax
gelatinosus IL144]
Length = 385
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 292/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 49 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIALWKDPNGLT 108
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 109 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 168
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ +IRDKDEFLIPFID + D F TG +NDQ LLKSLIVFAC+
Sbjct: 169 ESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFATGTPENDQTLLKSLIVFACL 228
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT
Sbjct: 229 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTP 288
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI LF +A+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 289 AFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEPLFPN 348
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV++YQSGG L W+
Sbjct: 349 EENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385
>gi|377821692|ref|YP_004978063.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
YI23]
gi|357936527|gb|AET90086.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
YI23]
Length = 392
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/345 (76%), Positives = 296/345 (85%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI L
Sbjct: 48 AIAAQSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAL 107
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GL+++ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 108 WKDPNGLSDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 167
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+KSIRDKDEFLIPFI+ LTD F TG + DQKLLK
Sbjct: 168 THAYQYIVESLGLDESEIFNAYHEVKSIRDKDEFLIPFINTLTDPAFTTGTLEADQKLLK 227
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 228 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 287
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
E P LWT EF EI +LF +A++LEY YAEDTMP+G+LGLN FKSYLRFI N R +QI
Sbjct: 288 EEPQLWTAEFKAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQI 347
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 348 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 392
>gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix
cholodnii SP-6]
gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6]
Length = 402
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 260/337 (77%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI WK+P GLT
Sbjct: 66 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGLT 125
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERRL+KRNLGFF TADSLAANNI LGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 126 DDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 185
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR+KDEFLIP+ID + D FKTG +NDQ LLKSLIVFAC+
Sbjct: 186 ESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFACL 245
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 246 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKLENPHLWTP 305
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI+ LFLKA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++++FP
Sbjct: 306 AFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFPN 365
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 366 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 402
>gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
ubonensis Bu]
Length = 403
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/337 (78%), Positives = 294/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIVFACI
Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +LF +A++LEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ ++P
Sbjct: 307 EFRAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 366
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|307731037|ref|YP_003908261.1| ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
Length = 411
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 262/340 (77%), Positives = 295/340 (86%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P
Sbjct: 72 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPN 131
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 132 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 191
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAYHE+ SIR KDEFLIP+I+VLTD FKTG + DQ LL+SLIVF
Sbjct: 192 YIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVF 251
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP L
Sbjct: 252 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 311
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI ++F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +
Sbjct: 312 WTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPL 371
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 372 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411
>gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei K96243]
gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei ATCC 23344]
gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
pseudomallei K96243]
gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei ATCC 23344]
Length = 350
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 266/345 (77%), Positives = 296/345 (85%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ + S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI L
Sbjct: 6 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 65
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 66 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 125
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD F TG + DQKLLK
Sbjct: 126 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 185
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 186 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 245
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN FKSYLRFI+N R +QI
Sbjct: 246 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 305
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 306 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350
>gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
Length = 414
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 262/340 (77%), Positives = 295/340 (86%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P
Sbjct: 75 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPN 134
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 135 GLTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 194
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAYHE+ SIR KDEFLIP+I+VLTD FKTG + DQ LL+SLIVF
Sbjct: 195 YIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVF 254
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP L
Sbjct: 255 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 314
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI ++F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +
Sbjct: 315 WTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPL 374
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 375 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414
>gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
petrii DSM 12804]
gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii]
Length = 396
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/337 (78%), Positives = 296/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GLT
Sbjct: 60 RVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGLT 119
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 120 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 179
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL LDE EIFNAY+E+ SIR KDEFLIPFI+ + D F TG ++DQKLLKSLIVFAC+
Sbjct: 180 ESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLIVFACL 239
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINTIK+ENP+LWT
Sbjct: 240 MEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWTP 299
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ ++P
Sbjct: 300 EFREEIRGLFQKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYPQ 359
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 360 EENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 396
>gi|398809047|ref|ZP_10567902.1| ribonucleotide reductase, beta subunit [Variovorax sp. CF313]
gi|398086341|gb|EJL76960.1| ribonucleotide reductase, beta subunit [Variovorax sp. CF313]
Length = 400
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 257/338 (76%), Positives = 297/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GL
Sbjct: 63 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 122
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 123 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 182
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFNAY+E+ SIR+KD+FLIPFID ++D FKTG + DQ LLKSLIVFAC
Sbjct: 183 VESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFAC 242
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP LWT
Sbjct: 243 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 302
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF EI+ LF++A+ELEY YAEDTMP+G+LG+N FK YLR+IAN R +QIG++ +FP
Sbjct: 303 AEFKAEIKALFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 362
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 363 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400
>gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium
petroleiphilum PM1]
gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
PM1]
Length = 403
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI WK+P GL+
Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGLS 126
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 127 EDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIRDKDEFLIPFI + D F TG +ND+ LLKSLIVFAC+
Sbjct: 187 ESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSLIVFACL 246
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTA 306
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LF+KA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++++FP
Sbjct: 307 EFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFPN 366
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 403
>gi|365093268|ref|ZP_09330335.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
NO-1]
gi|363414651|gb|EHL21799.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
NO-1]
Length = 398
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 297/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 62 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 121
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 122 DDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 181
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D F TG +NDQ LLKSLIVFAC+
Sbjct: 182 ESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPENDQTLLKSLIVFACL 241
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 242 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 301
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LFLKA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 302 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLFPN 361
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 362 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398
>gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 387
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 297/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 51 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 110
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 111 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 170
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E+ SIR+KDEFLIPFI+ + D FKTG + DQ LLKSLIVFAC+
Sbjct: 171 ESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFACL 230
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 231 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 290
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI+ LF+KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 291 EFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFPN 350
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 351 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387
>gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
Length = 414
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 262/340 (77%), Positives = 294/340 (86%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P
Sbjct: 75 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPN 134
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 135 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 194
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAYHE+ SIR KDEFLIP+I VLTD FKTG + DQ LL+SLIVF
Sbjct: 195 YIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVF 254
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP L
Sbjct: 255 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 314
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI ++F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +
Sbjct: 315 WTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPL 374
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 375 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414
>gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
Length = 398
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 298/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 62 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 121
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 122 DDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 181
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D FKTG + DQ+LLKSLIVFAC+
Sbjct: 182 ESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFACL 241
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 242 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 301
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LF++A+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 302 EFKAEIKALFMRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLFPN 361
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 362 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398
>gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase subunit beta [Burkholderia
rhizoxinica HKI 454]
gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1)
[Burkholderia rhizoxinica HKI 454]
Length = 416
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/337 (78%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 80 RVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 140 DDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFI LTD FKTG + DQKLLKSLIVFAC+
Sbjct: 200 ESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEADQKLLKSLIVFACV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 260 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTP 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI LF A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG++ +FP
Sbjct: 320 AFREEICGLFKHAVELEYRYAEDTMPRGVLGLNAGMFKSYLRFICNRRCQQIGLEPLFPN 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 380 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416
>gi|413958905|ref|ZP_11398144.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
SJ98]
gi|413941485|gb|EKS73445.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
SJ98]
Length = 413
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 262/337 (77%), Positives = 294/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P GL+
Sbjct: 77 RVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNGLS 136
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 137 DDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 196
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+KSIRDKDEFLIPFI+ LTD F TG + DQKLLKSLIVFACI
Sbjct: 197 ESLGLDESEIFNAYHEVKSIRDKDEFLIPFINTLTDPAFTTGTLEADQKLLKSLIVFACI 256
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+E P LWT
Sbjct: 257 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLEEPQLWTA 316
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F EI +LF +A++LEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +FP
Sbjct: 317 DFKAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLFPN 376
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 377 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 413
>gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax
paradoxus S110]
gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110]
Length = 391
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 296/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 55 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E+ SIR+KD+FLIPFID ++D FKTG + DQ LLKSLIVFAC+
Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFACL 234
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP LWT
Sbjct: 235 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWTP 294
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LFLKA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R +QIG++ +FP
Sbjct: 295 EFKAEIKALFLKAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFPN 354
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 391
>gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
Length = 411
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/337 (77%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 75 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNGLT 134
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 135 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 194
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIP+I VLTD FKTG + DQ LL+SLIVFAC+
Sbjct: 195 ESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFACV 254
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 255 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 314
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ ++P
Sbjct: 315 EFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 374
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 375 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411
>gi|295677726|ref|YP_003606250.1| ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
Length = 411
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/337 (77%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 75 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNGLT 134
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 135 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 194
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIP+I VLTD FKTG + DQ LL+SLIVFAC+
Sbjct: 195 ESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFACV 254
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP+LWT
Sbjct: 255 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 314
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI +F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ ++P
Sbjct: 315 EFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 374
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 375 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411
>gi|332526550|ref|ZP_08402662.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
benzoatilyticus JA2]
gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
benzoatilyticus JA2]
Length = 385
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 291/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 49 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIALWKDPNGLT 108
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 109 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 168
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ +IRDKDEFLIPFID + D F TG + DQ LLKSLIVFAC+
Sbjct: 169 ESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGTPEADQTLLKSLIVFACL 228
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT
Sbjct: 229 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTP 288
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI LF +A+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 289 AFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFPN 348
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV++YQSGG L W+
Sbjct: 349 EENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385
>gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit
[Achromobacter piechaudii ATCC 43553]
gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit
[Achromobacter piechaudii ATCC 43553]
Length = 398
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/338 (77%), Positives = 296/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GL
Sbjct: 61 QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 120
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 121 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+E+ SIR KD+FLIPFID + D FKTG + DQ LLKSLIVFAC
Sbjct: 181 VESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 240
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 241 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 300
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
F +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIGI+ ++P
Sbjct: 301 PAFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 360
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 361 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398
>gi|398803254|ref|ZP_10562360.1| ribonucleotide reductase, beta subunit [Polaromonas sp. CF318]
gi|398097133|gb|EJL87445.1| ribonucleotide reductase, beta subunit [Polaromonas sp. CF318]
Length = 408
Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust.
Identities = 258/338 (76%), Positives = 298/338 (88%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GL
Sbjct: 71 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 130
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 131 TEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 190
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
ESLGLDE EIFNAY+E++SI+DKD+FLIPFI+V+++ FKTG + DQ LLKSLIVFAC
Sbjct: 191 TESLGLDESEIFNAYNEVQSIKDKDQFLIPFIEVISNPHFKTGTPEADQTLLKSLIVFAC 250
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 251 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 310
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF EI+ LF+KA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++ +FP
Sbjct: 311 AEFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFP 370
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 371 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 408
>gi|452127277|ref|ZP_21939860.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
holmesii F627]
gi|452130648|ref|ZP_21943220.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
holmesii H558]
gi|451920573|gb|EMD70719.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
holmesii H558]
gi|451922372|gb|EMD72517.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
holmesii F627]
Length = 398
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 263/344 (76%), Positives = 298/344 (86%)
Query: 12 LKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELW 71
L + R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LW
Sbjct: 55 LSGTTARRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALW 114
Query: 72 KNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 131
KNP GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHT
Sbjct: 115 KNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 174
Query: 132 HAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191
HAYQYIVESL LDE EIFNAY+E+ SIR KDEFLIPFI+ + D FKTG + DQ LLKS
Sbjct: 175 HAYQYIVESLDLDESEIFNAYNEVPSIRAKDEFLIPFIEAIADPNFKTGTPEADQTLLKS 234
Query: 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME 251
LIVFAC+MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINT+K+E
Sbjct: 235 LIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLE 294
Query: 252 NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIG 311
NP+LWT EF +EI +LF KA+ELEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG
Sbjct: 295 NPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIG 354
Query: 312 IKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
I+ ++P E NPFPWM+EMI +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 355 IEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398
>gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
Length = 411
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 256/338 (75%), Positives = 298/338 (88%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GL
Sbjct: 74 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFNAY+E++SIR+KD+FL+PFID ++D FKTG + DQ LLKSLIVFAC
Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP LWT
Sbjct: 254 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 313
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF EI+ LF++A+ELEY YAEDTMP+G+LG+N FK YLR+IAN R +QIG++ +FP
Sbjct: 314 PEFKAEIKDLFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 373
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 374 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 411
>gi|407714788|ref|YP_006835353.1| ribonucleoside-diphosphate reductase subunit beta [Burkholderia
phenoliruptrix BR3459a]
gi|407236972|gb|AFT87171.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
phenoliruptrix BR3459a]
Length = 390
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/340 (77%), Positives = 294/340 (86%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P
Sbjct: 51 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPN 110
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 111 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 170
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAYHE+ SIR KDEFLIP+I VLTD FKTG + DQ LL+SLIVF
Sbjct: 171 YIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVF 230
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP L
Sbjct: 231 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 290
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI ++F +A+ELEY YAEDTMP+G+LGLN FKSYLRFI N R +QIG+ +
Sbjct: 291 WTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPL 350
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 351 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 390
>gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
testosteroni S44]
gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
testosteroni S44]
Length = 363
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 257/341 (75%), Positives = 299/341 (87%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
++ +R+N +K+IIN TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P
Sbjct: 23 STHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 82
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 83 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 142
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D F TG + DQ LLKSLIV
Sbjct: 143 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIV 202
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FAC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+
Sbjct: 203 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPH 262
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF +EI +LF KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG+++
Sbjct: 263 LWTAEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEE 322
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 323 LFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363
>gi|350545923|ref|ZP_08915363.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Candidatus Burkholderia kirkii UZHbot1]
gi|350526299|emb|CCD40813.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Candidatus Burkholderia kirkii UZHbot1]
Length = 396
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/345 (75%), Positives = 293/345 (84%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+ S R+N +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI L
Sbjct: 52 AIAAQSEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAL 111
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+P GL+ +ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIH
Sbjct: 112 WKDPNGLSGDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 171
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
THAYQYIVESLGL+E EIFNAYHE+KSIRDKDEFLIPFI LTD F TG + DQKLLK
Sbjct: 172 THAYQYIVESLGLNESEIFNAYHEVKSIRDKDEFLIPFIQTLTDPAFTTGTLEADQKLLK 231
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
SLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+
Sbjct: 232 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 291
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
E P LWT EF EI +LF +A++LEY YAEDTMP+G+ GLN FKSYLRFI N R +QI
Sbjct: 292 EEPQLWTAEFKAEIRELFKQAVDLEYRYAEDTMPRGVFGLNASMFKSYLRFICNRRCQQI 351
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 352 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 396
>gi|418529836|ref|ZP_13095763.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
testosteroni ATCC 11996]
gi|371452892|gb|EHN65917.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
testosteroni ATCC 11996]
Length = 363
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 257/341 (75%), Positives = 299/341 (87%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
++ +R+N +K+IIN TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P
Sbjct: 23 STHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 82
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 83 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 142
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D F TG + DQ LLKSLIV
Sbjct: 143 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFNTGTPETDQTLLKSLIV 202
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FAC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+
Sbjct: 203 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPH 262
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF +EI +LF KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG+++
Sbjct: 263 LWTAEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEE 322
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 323 LFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363
>gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta
[Verminephrobacter eiseniae EF01-2]
gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae
EF01-2]
Length = 399
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVP KY WAW++YL+SCANHWMPQE+NM RDI LWK P GL+
Sbjct: 63 RVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANHWMPQEVNMTRDIALWKTPGGLS 122
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 123 DDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 182
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIRDKD+FLIPFI+ + D F TG+ NDQ LLKSLIVFAC+
Sbjct: 183 ESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPHFHTGSAANDQTLLKSLIVFACL 242
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWTT
Sbjct: 243 MEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPLLWTT 302
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EIE LFL+A+ELEY YAEDTMP G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 303 AFKAEIEALFLQAVELEYRYAEDTMPHGVLGMNASMFKGYLRYIANRRATQIGLETLFPQ 362
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 363 ETNPFPWMSEMIDLKKERNFFETRVIEYQSGGALCWD 399
>gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
citrulli AAC00-1]
gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1]
Length = 387
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 296/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 51 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 110
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 111 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 170
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E+ SIR KDEFLIPFI+ + D FKTG + DQ LLKSLIVFAC+
Sbjct: 171 ESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFACL 230
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 231 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 290
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI+ LF+KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 291 EFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFPN 350
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 351 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387
>gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
Length = 363
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 256/341 (75%), Positives = 299/341 (87%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
++ +R+N +K+IIN TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P
Sbjct: 23 STHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 82
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAY
Sbjct: 83 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 142
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYIVESLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D F TG + DQ LLKSLIV
Sbjct: 143 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIV 202
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
FAC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+
Sbjct: 203 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPH 262
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT EF +EI +LF +A+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG+++
Sbjct: 263 LWTAEFKQEITELFQRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEE 322
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 323 LFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363
>gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus
denitrificans ATCC 25259]
gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus
denitrificans ATCC 25259]
Length = 376
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 260/337 (77%), Positives = 294/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI WK+P LT
Sbjct: 40 RVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTALT 99
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 100 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 159
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHEI+SIRDKD+FLIPFID LT+ +FKTG +NDQKLLKSLIVFACI
Sbjct: 160 ESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFACI 219
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEG+FFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDLINTIK ENP+LWT+
Sbjct: 220 MEGIFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKQENPHLWTS 279
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI L K +ELE+ YAEDTMP+G+LGLN FK YLRFI+N R +QIG+ ++FP
Sbjct: 280 EFKAEIRTLIQKGVELEFRYAEDTMPRGVLGLNSAQFKEYLRFISNRRCQQIGLDEMFPG 339
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWM+EMI +KKE NFFETRV EYQ+GG L W+
Sbjct: 340 VSNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 376
>gi|337281114|ref|YP_004620586.1| ribonucleoside reductase subunit beta [Ramlibacter tataouinensis
TTB310]
gi|334732191|gb|AEG94567.1| Candidate ribonucleoside reductase, beta chain [Ramlibacter
tataouinensis TTB310]
Length = 406
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 257/332 (77%), Positives = 292/332 (87%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GL+E+ERR
Sbjct: 75 DKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLSEDERR 134
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIVESLGL
Sbjct: 135 VIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVESLGL 194
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
DE EIFNAYHE+ SIRDKD+FLIPFID + D F TG +NDQ LLKSLIVFAC+MEGLF
Sbjct: 195 DESEIFNAYHEVPSIRDKDQFLIPFIDAIMDPNFHTGTPENDQTLLKSLIVFACLMEGLF 254
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT +F E
Sbjct: 255 FYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTADFKAE 314
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
I+ LF KA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++ +FP E NPF
Sbjct: 315 IKSLFQKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEALFPNEENPF 374
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 375 PWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406
>gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
Length = 381
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 297/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ ++K++ING TDVNQLVPFKY+WAWD+YL+ CANHWMPQEI+M RDI WK+ LT
Sbjct: 45 RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 104
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 105 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 164
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY E+ SIRDKD+FLIPFI+ LTD +FKTG T+ DQ+LL+SLIVFACI
Sbjct: 165 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFACI 224
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 225 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLWTP 284
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI++L +A+ELEY YAEDTMP+G+LGLN FK YLRFIAN RM+QIGI ++P
Sbjct: 285 EFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALYPG 344
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 345 ASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381
>gi|253998799|ref|YP_003050862.1| ribonucleoside-diphosphate reductase [Methylovorus glucosetrophus
SIP3-4]
gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus glucosetrophus
SIP3-4]
Length = 383
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 297/337 (88%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ ++K++ING TDVNQLVPFKY+WAWD+YL+ CANHWMPQEI+M RDI WK+ LT
Sbjct: 47 RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 106
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 107 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 166
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY E+ SIRDKD+FLIPFI+ LTD +FKTG T+ DQ+LL+SLIVFACI
Sbjct: 167 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFACI 226
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDLINT+K+ENP+LWT
Sbjct: 227 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLWTP 286
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI++L +A+ELEY YAEDTMP+G+LGLN FK YLRFIAN RM+QIGI ++P
Sbjct: 287 EFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALYPG 346
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 347 ASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 383
>gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
BC]
gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
K601]
gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
BC]
gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
K601]
Length = 396
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ ++K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWK+P GLT
Sbjct: 60 RVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNGLT 119
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 120 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 179
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+E++SIR KDEFLIPFI+ + D FKTG +NDQ LLKSLIVFAC+
Sbjct: 180 ESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFACL 239
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP LWT
Sbjct: 240 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLWTP 299
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI+ LFLKA++LEY YAEDTMP+G+LG+N FK YLR+IAN R QIG+ +FP
Sbjct: 300 AFKDEIKGLFLKAVDLEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLDALFPN 359
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 360 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396
>gi|347821495|ref|ZP_08874929.1| ribonucleotide-diphosphate reductase subunit beta
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 386
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 256/337 (75%), Positives = 295/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING TDVNQLVPFKY WAW++YL+SCANHWMPQE+NM RDI LWK+P GLT
Sbjct: 50 RVRAADKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNMTRDIALWKDPQGLT 109
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++KRNLGFF TADSLAANNIVLG+YRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 110 DDERRIIKRNLGFFVTADSLAANNIVLGSYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 169
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY+EI SIRDKD FLIPFI+ + D F+TG +NDQ LLKSLIVFAC+
Sbjct: 170 ESLGLDESEIFNAYNEIPSIRDKDAFLIPFIEAIMDPGFRTGTAQNDQTLLKSLIVFACL 229
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILA+GRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT
Sbjct: 230 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTA 289
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F EI+ LFL+A+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP+
Sbjct: 290 QFKAEIKVLFLEAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEVLFPH 349
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 350 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 386
>gi|351729071|ref|ZP_08946762.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
radicis N35]
Length = 398
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 257/337 (76%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 62 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 121
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 122 EDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 181
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY E+ SIRDKD+FLIPFI+ + D F TG + DQ LLKSLIVFAC+
Sbjct: 182 ESLGLDEGEIFNAYLEVPSIRDKDQFLIPFIEAIMDPNFHTGTFETDQTLLKSLIVFACL 241
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 242 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 301
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI LF+KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 302 EFKAEINALFMKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLFPN 361
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 362 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398
>gi|456062542|ref|YP_007501512.1| ribonucleotide-diphosphate reductase subunit beta [beta
proteobacterium CB]
gi|455439839|gb|AGG32777.1| ribonucleotide-diphosphate reductase subunit beta [beta
proteobacterium CB]
Length = 391
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++IN TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 55 RVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 114
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 115 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 174
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLD+ EIFNAY+EI+SIR KD+FLIPFIDVLTD FKTG + DQ LL+SLIVFAC+
Sbjct: 175 ESLGLDQSEIFNAYNEIESIRAKDQFLIPFIDVLTDPNFKTGTLETDQMLLRSLIVFACV 234
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILA+GRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT+
Sbjct: 235 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTS 294
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI+ +F KA+ELEY YAEDTMP+G+LGLN FK YLR+I N R QIG+ +FP
Sbjct: 295 AFKDEIKAIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYLRYICNRRCLQIGLDAMFPN 354
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 391
>gi|332286774|ref|YP_004418685.1| ribonucleoside-diphosphate reductase subunit beta [Pusillimonas sp.
T7-7]
gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
T7-7]
Length = 387
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 294/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWKNP GLT
Sbjct: 51 RVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDISLWKNPNGLT 110
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 111 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 170
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL LDE EIFNAY+E+ SIR KDEFLIPFID + D F+TG + DQ LLKSLIVFAC+
Sbjct: 171 ESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQTGTPEADQTLLKSLIVFACL 230
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E Y YILRDESMHCNFGIDLINTIK+ENP+LWT
Sbjct: 231 MEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWTA 290
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ +LF KA++LEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG++ +F
Sbjct: 291 EFREELRELFKKAVDLEYAYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLEPLFGQ 350
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWM+EMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 351 EENPFPWMAEMIDLKKERNFFETRVIEYQTGGALSWE 387
>gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas
naphthalenivorans CJ2]
gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans
CJ2]
Length = 387
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 256/338 (75%), Positives = 295/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K+IING TDVNQLVPFKY WAW++YL+SCANHWMPQE+NM RDI LWK+P GL
Sbjct: 50 KRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNMTRDIALWKDPNGL 109
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+++ERRLV RNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 110 SDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 169
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
ESLGLDE EIFNAY+E++SI+DKD+FLIPFI+ ++D FKTG ++DQ LLKSLIVFAC
Sbjct: 170 TESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLESDQTLLKSLIVFAC 229
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP LWT
Sbjct: 230 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLWT 289
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF EI LF+KA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++ +FP
Sbjct: 290 AEFKAEINALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFP 349
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 350 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387
>gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia
acidovorans SPH-1]
gi|333916625|ref|YP_004490357.1| ribonucleoside-diphosphate reductase [Delftia sp. Cs1-4]
gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1]
gi|333746825|gb|AEF92002.1| Ribonucleoside-diphosphate reductase [Delftia sp. Cs1-4]
Length = 363
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 257/340 (75%), Positives = 295/340 (86%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
+ +R+N +K+IIN TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P
Sbjct: 24 THKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPN 83
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 84 GLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 143
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE EIFNAY E+ SIRDKDEFLIPFI+ + D FKTG + DQ LLKSLIVF
Sbjct: 144 YIVESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLIVF 203
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
AC+MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP L
Sbjct: 204 ACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQL 263
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF +EI LF+KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +
Sbjct: 264 WTPEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEAL 323
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 324 FPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363
>gi|395009427|ref|ZP_10392962.1| ribonucleotide reductase, beta subunit [Acidovorax sp. CF316]
gi|394312542|gb|EJE49685.1| ribonucleotide reductase, beta subunit [Acidovorax sp. CF316]
Length = 399
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 256/337 (75%), Positives = 294/337 (87%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 63 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 122
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 123 DDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 182
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAY E+ SIRDKD+FLIPFI+ + D F TG + DQ LLKSLIVFAC+
Sbjct: 183 ESLGLDEGEIFNAYLEVPSIRDKDQFLIPFIEAIMDPNFHTGTFETDQTLLKSLIVFACL 242
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT
Sbjct: 243 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 302
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ LF+KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 303 EFKAEIKALFMKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLFPN 362
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 363 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399
>gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 394
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 257/337 (76%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++IN TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 58 RVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLD+ EIFNAY+EI+SIR KDEFLIP+IDVLT+ FKTG + DQ LL+SLIVFAC+
Sbjct: 178 ESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKTGTLETDQTLLRSLIVFACV 237
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILA+GRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT+
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTS 297
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI+ +F KA+ELEY YAEDTMP+G+LGLN FK YLR+I N R QIG+ +FP
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYLRYICNRRCLQIGLDAMFPN 357
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394
>gi|451812463|ref|YP_007448917.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778365|gb|AGF49313.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 347
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 262/338 (77%), Positives = 295/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ K+IING TDVNQLVPFKY WAW++YLSSCANHWMPQE+NM RDI LWKNP GL
Sbjct: 10 KRVIASEKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNMSRDIALWKNPNGL 69
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
T++ER +VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 70 TDDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 129
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+EI+SIR KDEFLIPFID ++D KF+TG + DQ LLKS+IVFAC
Sbjct: 130 VESLDLDESEIFNAYNEIESIRAKDEFLIPFIDAISDKKFQTGTLETDQTLLKSIIVFAC 189
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGFVQIL+LGRQNKM G++E Y YILRDESMHCNFGIDLINTIKMENP LWT
Sbjct: 190 LMEGLFFYVGFVQILSLGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKMENPQLWT 249
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI LF KA++LEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG+ +F
Sbjct: 250 QEFREEIVSLFYKAVDLEYAYAEDTMPRGVLGLNAAMFKSYLRFIANRRAQQIGLDMLFE 309
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 310 QEINPFPWMSEMVDLKKERNFFETRVIEYQTGGTLTWE 347
>gi|375107584|ref|ZP_09753845.1| ribonucleotide reductase, beta subunit [Burkholderiales bacterium
JOSHI_001]
gi|374668315|gb|EHR73100.1| ribonucleotide reductase, beta subunit [Burkholderiales bacterium
JOSHI_001]
Length = 414
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 256/337 (75%), Positives = 289/337 (85%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N K+IING TDVNQLVPFKY WAW++YL++CANHWMPQEINM RDI +WK+P GL+
Sbjct: 78 RVNVAEKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIAMWKDPNGLS 137
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF TADSLAANNI LGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 138 EDERRIIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 197
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIR KDEFLIPFID + D F TG + DQ LLKS+IVFAC+
Sbjct: 198 ESLGLDEGEIFNAYHEVSSIRQKDEFLIPFIDAIMDPHFHTGTPEADQTLLKSIIVFACL 257
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK ENP LWT
Sbjct: 258 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKAENPQLWTP 317
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F EI+ LF +A+ELEY YAEDTMP+G+LGLN FK YLR+IAN R QIG++ +FP
Sbjct: 318 QFKAEIKALFEQAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEALFPN 377
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 378 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 414
>gi|332530699|ref|ZP_08406630.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
gracilis ATCC 19624]
gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
gracilis ATCC 19624]
Length = 399
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 256/337 (75%), Positives = 291/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GL+
Sbjct: 63 RIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGLS 122
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 123 EDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 182
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIF+AY E++SIRDKDEFL+PFI+ + D F TG + DQ LLKSLIVFAC+
Sbjct: 183 ESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFHTGTLETDQTLLKSLIVFACL 242
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT
Sbjct: 243 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTP 302
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI LF KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++ +FP
Sbjct: 303 EFKAEIRGLFEKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFPN 362
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQSGG L W+
Sbjct: 363 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399
>gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira
multiformis ATCC 25196]
gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
25196]
Length = 408
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 293/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K+IIN DVNQLVPFKY WAW++YL++CANHWMPQEINM RDI LWK+P GLT
Sbjct: 72 RVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNGLT 131
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRH+T PECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 132 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQYIV 191
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE++SIR+KDEFLIPFID LTD F+TG + DQKLLKSLIVFACI
Sbjct: 192 ESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFACI 251
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF+QILALGRQNKM GS+E YQYILRDESMHCNFGID++N IKMENP+LWT
Sbjct: 252 MEGLFFYVGFIQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVVNQIKMENPHLWTK 311
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI L KA+ELEY YAEDTMP+G+LGLN FK YLR+IAN R +QIG+ ++P
Sbjct: 312 EFRSEISALMQKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRYIANRRCQQIGLDILYPG 371
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV EYQ+GG L+W+
Sbjct: 372 ASNPFPWMSEMIDLKKEKNFFETRVTEYQTGGVLNWD 408
>gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
Length = 336
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 256/336 (76%), Positives = 295/336 (87%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+IIN TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLTE
Sbjct: 1 MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYIVE
Sbjct: 61 DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
SLGLDE EIFNAY+E++SIRDKDEFLIPFI+ + D F TG + DQ LLKSLIVFAC+M
Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFACLM 180
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGIDLIN +K+ENP+LWT E
Sbjct: 181 EGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTAE 240
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
F +EI +LF KA+ELEY YAEDTMP+G+LG+N FK YLR+IAN R QIG++++FP E
Sbjct: 241 FKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFPGE 300
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 301 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 336
>gi|437999565|ref|YP_007183298.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813186|ref|YP_007449639.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429338799|gb|AFZ83221.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779155|gb|AGF50035.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 347
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/338 (77%), Positives = 296/338 (87%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+RI K+IING TDVNQLVPFKY WAW++YLSSCANHWMPQE++M RDI LWKNP GL
Sbjct: 10 KRIIASEKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVSMSRDIALWKNPNGL 69
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
T++ER +VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 70 TDDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 129
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+EI+SIR KDEFLIPFIDV++D KF+TG + DQ LLKS+IVFAC
Sbjct: 130 VESLDLDESEIFNAYNEIESIRAKDEFLIPFIDVISDKKFQTGTLEADQTLLKSIIVFAC 189
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGFVQIL+LGRQNKM GS+E Y YILRDESMHCNFGIDLINTIK+ENP LWT
Sbjct: 190 LMEGLFFYVGFVQILSLGRQNKMTGSAEQYMYILRDESMHCNFGIDLINTIKLENPQLWT 249
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI LF KA++LEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG+ +F
Sbjct: 250 REFREEITSLFYKAVDLEYAYAEDTMPRGVLGLNSTMFKSYLRFIANRRAQQIGLDILFE 309
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 310 QEINPFPWMSEMVDLKKERNFFETRVIEYQTGGTLTWE 347
>gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Pseudogulbenkiania
ferrooxidans 2002]
gi|347539722|ref|YP_004847147.1| ribonucleoside-diphosphate reductase subunit beta
[Pseudogulbenkiania sp. NH8B]
gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Pseudogulbenkiania
ferrooxidans 2002]
gi|345642900|dbj|BAK76733.1| ribonucleoside-diphosphate reductase, beta subunit
[Pseudogulbenkiania sp. NH8B]
Length = 360
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/337 (77%), Positives = 292/337 (86%), Gaps = 1/337 (0%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++ING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NMQRDIE WK L+
Sbjct: 25 RVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTG-QLS 83
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+E RLVKRNLGFF TADSLAANNIVLGTYR ITAPECRQ+LLRQAF+EAIHTHAYQYIV
Sbjct: 84 EDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQYIV 143
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAYHEIKSIRDKDEFLIPFID L + +FKTG T+ DQ+LLKSLIVFACI
Sbjct: 144 ESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVFACI 203
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDLINT+K ENP LWT
Sbjct: 204 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTVKQENPQLWTE 263
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI LF A+ELEY YAEDTMP+G+LGLN FK YLRFIAN RM+QIG++ +FP
Sbjct: 264 EFKAEITGLFKHAVELEYAYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGLEPMFPG 323
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV EYQ+GG L W+
Sbjct: 324 VTNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360
>gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
europaea ATCC 19718]
gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718]
Length = 382
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/337 (77%), Positives = 291/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K+IIN DVNQLVPFKY WAW++YLS+CANHWMPQEINM RDI LWK+P GLT
Sbjct: 46 RVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGLT 105
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHIT PECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 106 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYIV 165
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ES+GLDE EIFNAYHEI SIRDKDEFLIPFID LTD F+TG + DQ+LLKSLIVFACI
Sbjct: 166 ESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVFACI 225
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGID+IN IK+ENP+LWT
Sbjct: 226 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLWTR 285
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI L KA+ELEY YAEDTMP+G+LGLN FK YLRFI N R QIG+ +FP
Sbjct: 286 EFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLFPE 345
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 346 AGNPFPWMSEMIDLKKEKNFFETRVIEYQTGGVLSWD 382
>gi|451823322|ref|YP_007459596.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776122|gb|AGF47163.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 355
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 264/348 (75%), Positives = 301/348 (86%), Gaps = 1/348 (0%)
Query: 8 KKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRD 67
K++ +N+ +R+ +K+IING TDVNQLVPFKY WAW++YL SCAN+WMPQE+NM RD
Sbjct: 9 KQEKYNLNT-QRVQLSDKRIINGKTDVNQLVPFKYKWAWEKYLGSCANNWMPQEVNMSRD 67
Query: 68 IELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEE 127
I LWKNP GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEE
Sbjct: 68 IALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEE 127
Query: 128 AIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK 187
AIHTHAYQYIVESL LDE EIFNAY EI SIR KDEFLIPFI++++D FKTG+ ++DQ
Sbjct: 128 AIHTHAYQYIVESLDLDEGEIFNAYSEIDSIRAKDEFLIPFINIISDSNFKTGSLESDQN 187
Query: 188 LLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINT 247
LLKSLIVFAC+MEGLFFYVGFVQIL+LGRQNKM G++E Y YILRDESMHCNFGID+INT
Sbjct: 188 LLKSLIVFACLMEGLFFYVGFVQILSLGRQNKMTGAAEQYMYILRDESMHCNFGIDMINT 247
Query: 248 IKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRM 307
IK+ENP+LWT F +EI LF KA+ELEY YAEDTMP+GILGLN FKSYLRFIAN R
Sbjct: 248 IKLENPHLWTDSFQEEILDLFKKAVELEYAYAEDTMPRGILGLNASMFKSYLRFIANRRC 307
Query: 308 KQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+QIG+ IF E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 308 QQIGLNTIFAQENNPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 355
>gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium
violaceum ATCC 12472]
gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium
violaceum ATCC 12472]
Length = 360
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/337 (77%), Positives = 294/337 (87%), Gaps = 1/337 (0%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N ++K++ING TDVNQLVPFK+ WAW++YL+ CANHWMPQE+NMQRDIE WK LT
Sbjct: 25 RVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTG-QLT 83
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+E R+VKRNLGFF TADSLAANNIVLGTYR IT+PECRQ+LLRQAF+EAIHTHAYQYIV
Sbjct: 84 EDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQAFDEAIHTHAYQYIV 143
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAYHE+KSIRDKDEFLIPFIDVL + +FKTG +NDQKLLKSLIVFACI
Sbjct: 144 ESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVENDQKLLKSLIVFACI 203
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGIDLINTIK+ENP LWT
Sbjct: 204 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKLENPLLWTD 263
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI LF +A+ELEY YAEDTMP+G+LGLN FK YLRFIAN RM+QIG+ +FP
Sbjct: 264 SFKAEIVDLFKQAVELEYAYAEDTMPRGVLGLNASMFKEYLRFIANRRMQQIGLDPLFPG 323
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV EYQ+GG L W+
Sbjct: 324 VNNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360
>gi|394987969|ref|ZP_10380807.1| ribonucleoside-diphosphate reductase [Sulfuricella denitrificans
skB26]
gi|393792427|dbj|GAB70446.1| ribonucleoside-diphosphate reductase [Sulfuricella denitrificans
skB26]
Length = 375
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 259/342 (75%), Positives = 292/342 (85%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
I+ RI +K+IING DVNQLVPFKYNWAW +YL +CANHWMPQE+NM RDI LWK+
Sbjct: 34 IHDTRRIKAEDKRIINGDADVNQLVPFKYNWAWQKYLDACANHWMPQEVNMNRDIALWKD 93
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLT++ERR+V RNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA
Sbjct: 94 PNGLTDDERRIVLRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 153
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVESLGLDE EIFN YHE+ SIRDKDEFLIPFID L + FKTG ++DQKLL+S+I
Sbjct: 154 YQYIVESLGLDEGEIFNMYHEVPSIRDKDEFLIPFIDTLCNPNFKTGTPEDDQKLLRSII 213
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFACIMEG+FFYVGFVQILALGR NKM+G++E YQYILRDESMH NFG+DLIN IKMENP
Sbjct: 214 VFACIMEGIFFYVGFVQILALGRMNKMVGAAEQYQYILRDESMHLNFGVDLINQIKMENP 273
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+LWT EF EI L KA+ELEY YAEDTMP+G+LG+N FK YLRFIAN R +QIGI
Sbjct: 274 HLWTPEFRVEIAGLIKKAVELEYAYAEDTMPRGVLGMNASMFKEYLRFIANRRCQQIGID 333
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Q++P NPFPWMSEM+ +KKE NFFETRV EYQSGG L W+
Sbjct: 334 QLYPGAENPFPWMSEMMDLKKEKNFFETRVTEYQSGGALSWD 375
>gi|339483521|ref|YP_004695307.1| ribonucleotide reductase [Nitrosomonas sp. Is79A3]
gi|338805666|gb|AEJ01908.1| ribonucleotide reductase [Nitrosomonas sp. Is79A3]
Length = 398
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 289/337 (85%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +KQIIN + DVNQLVPFKY WAWD+YL +CANHWMPQEI+M RDI LWK+P GLT
Sbjct: 62 RVSVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDISLWKDPNGLT 121
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERRL+KRNLGFF TADSLAANNIVLGTYRHIT PECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 122 EDERRLIKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYIV 181
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIRDKDEFLIPFID LTD FKTG + DQ+LLKSLIVFACI
Sbjct: 182 ESLGLDEGEIFNAYHEVASIRDKDEFLIPFIDTLTDPHFKTGTQETDQQLLKSLIVFACI 241
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDESMHCNFGID+IN IKMENP+LWT
Sbjct: 242 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKMENPHLWTK 301
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI +L KA+ LEY YAEDTMP+G+LG+N FK YLR+IAN R +QIG+ ++P
Sbjct: 302 AFRDEINELMHKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIANRRCQQIGLDILYPN 361
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV EYQ+GG L W+
Sbjct: 362 ANNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 398
>gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
eutropha C91]
gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91]
Length = 377
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 260/337 (77%), Positives = 292/337 (86%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K+IIN DVNQLVPFKY WAW++YLS+CANHWMPQEINM RDI LWK+P GLT
Sbjct: 41 RVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGLT 100
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHIT PECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 101 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYIV 160
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ES+GLDE EIFNAYHEIKSIRDKDEFLIPFID LT+ F+TG + DQ+LLKSLIVFACI
Sbjct: 161 ESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFACI 220
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQIL+LGRQNKM G++E YQYILRDESMHCNFGID+IN IK+ENP+LWT
Sbjct: 221 MEGLFFYVGFVQILSLGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLWTR 280
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI L KA+ELEY YAEDTMP+G+LGLN FK YLRFI N R QIG+ +FP
Sbjct: 281 EFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLFPE 340
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 341 AGNPFPWMSEMVDLKKEKNFFETRVIEYQTGGVLSWD 377
>gi|171463021|ref|YP_001797134.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 394
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 255/337 (75%), Positives = 289/337 (85%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWK+P GLT
Sbjct: 58 RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLD+ EIFNAYHEI SIR KDEFLIP+IDVLT+ FKTG + DQ LL+SLIVFAC+
Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFACV 237
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILA+GRQNKM G++E YQYILRDESMHCNFGIDLIN IK+ENP LW +
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWIS 297
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI+ +F KA+ELEY YAEDTMP+G+LGLN FK LR+I N R QIG+ +FP
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGCLRYICNRRCLQIGLDAMFPN 357
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L WE
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394
>gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
Length = 381
Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust.
Identities = 258/337 (76%), Positives = 287/337 (85%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +KQIIN + DVNQLVPFKY WAWD+YL +CANHWMPQEI+M RDI LW++P GLT
Sbjct: 45 RIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDIALWRDPNGLT 104
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERRLVKRNLGFF TADSLAANNIVLGTYRHIT PECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 105 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYIV 164
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFNAYHE+ SIRDKDEFLIPFID LT+ FKTG + DQ+LL+SLIVFACI
Sbjct: 165 ESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLETDQQLLRSLIVFACI 224
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM GS+E YQYILRDESMHCNFGID+IN IKMENP LWT
Sbjct: 225 MEGLFFYVGFTQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVINQIKMENPQLWTK 284
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI L KA+ LEY YAEDTMP+G+LG+N FK YLR+IAN R +QIG+ ++P
Sbjct: 285 AFREEIAALMQKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIANRRCQQIGLDTLYPN 344
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 345 ANNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381
>gi|348617976|ref|ZP_08884509.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816681|emb|CCD29167.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 373
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/338 (77%), Positives = 289/338 (85%), Gaps = 1/338 (0%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RIN +K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQEINM RDI LWKNP GLT
Sbjct: 36 RINVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKNPYGLT 95
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI
Sbjct: 96 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIA 155
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E FNAYHEI+SIRDKD FLIPFI LTD FKTG DQ LL+SLIVFAC+
Sbjct: 156 ESLGLDEGETFNAYHEIESIRDKDAFLIPFIHTLTDPMFKTGAPDADQALLRSLIVFACM 215
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILALGRQNKM G++E YQYILRDES+HCNFGIDLIN IK+ENP+LWT
Sbjct: 216 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWTP 275
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F EI +LF +A++LEY YAEDTMP+G+LGLN FK YLRFI N R +QIGI +F
Sbjct: 276 HFRAEIRELFSQAVDLEYRYAEDTMPRGVLGLNALMFKKYLRFICNRRCRQIGISLLFAE 335
Query: 319 -ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L+W+
Sbjct: 336 DEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWD 373
>gi|296135014|ref|YP_003642256.1| ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
Length = 402
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 256/347 (73%), Positives = 296/347 (85%), Gaps = 4/347 (1%)
Query: 13 KINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWK 72
+ S R+ +K+IIN DVNQLVPFKY WAWD+YL+SCANHWMPQEINM RDI +WK
Sbjct: 56 RAASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWK 115
Query: 73 NPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 132
+P GLT++ER ++KRNLGFF+TADSLAANNIVLGTYRHIT PECRQYLLRQAFEEAIHTH
Sbjct: 116 DPNGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTH 175
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKT----GNTKNDQKL 188
AYQYIVES+GLDE EIFN+YHEI SIRDKDEFLIPFID LT+ +F+T G+ +NDQ+L
Sbjct: 176 AYQYIVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQEL 235
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
L+S+IVFAC+MEGLFFYVGF QIL++GRQNKM G++E YQYILRDESMH NFGIDL+N I
Sbjct: 236 LRSIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQI 295
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
K+ENP+LWT EF +E+ LF +A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R
Sbjct: 296 KLENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAV 355
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
QIG+ IFP E NPFPWMSEMI +KKE NFFETRV+EYQSGG L WE
Sbjct: 356 QIGLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 402
>gi|451936695|ref|YP_007460549.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777618|gb|AGF48593.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 347
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 259/338 (76%), Positives = 294/338 (86%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ K+IING TDVNQLVPFKY WAW++YLSSCANHWMPQE+NM RDI LWK+P GL
Sbjct: 10 KRVIASEKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNMSRDISLWKDPNGL 69
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
T +ER +VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQYI
Sbjct: 70 TNDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 129
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESL LDE EIFNAY+EI+SIR KDEFLIPFID ++D KF+TG + DQ LLKS+IVFAC
Sbjct: 130 VESLDLDESEIFNAYNEIESIRAKDEFLIPFIDAISDKKFQTGTLEADQTLLKSIIVFAC 189
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+MEGLFFYVGFVQIL+LGRQNKM G++E Y YILRDESMHCNFGIDLINTIK+ENP LWT
Sbjct: 190 LMEGLFFYVGFVQILSLGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPQLWT 249
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
+F +EI LF KA++LEY YAEDTMP+G+LGLN FKSYLRFIAN R +QIG+ +F
Sbjct: 250 QKFREEIISLFYKAVDLEYAYAEDTMPRGVLGLNSSMFKSYLRFIANRRAQQIGLDILFE 309
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
E NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 310 QEINPFPWMSEMVDLKKERNFFETRVIEYQTGGTLTWE 347
>gi|410692607|ref|YP_003623228.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
diphosphate reductase, beta subunit) [Thiomonas sp. 3As]
gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
diphosphate reductase, beta subunit) [Thiomonas sp. 3As]
Length = 410
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 254/347 (73%), Positives = 296/347 (85%), Gaps = 4/347 (1%)
Query: 13 KINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWK 72
+ S R+ +K+IIN DVNQLVPFKY WAWD+YL+SCANHWMPQE+NM RDI +WK
Sbjct: 64 RAASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWK 123
Query: 73 NPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 132
+P GLT++ER ++KRNLGFF+TADSLAANNIVLGTYRHIT PECRQYLLRQAFEEAIHTH
Sbjct: 124 DPNGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTH 183
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKT----GNTKNDQKL 188
AYQYIVES+GLDE EIFN+YHEI SIR+KDEFLIPFID LT+ +F+T G+ +NDQ+L
Sbjct: 184 AYQYIVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQEL 243
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
L+S+IVFAC+MEGLFFYVGF QIL++GRQNKM G++E YQYILRDESMH NFGIDL+N I
Sbjct: 244 LRSIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQI 303
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
K+ENP+LWT EF +E+ LF +A+ELEY YAEDTMP+G+LGLN FK YLRFIAN R
Sbjct: 304 KLENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAV 363
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
QIG+ IFP E NPFPWMSEMI +KKE NFFETRV+EYQSGG L WE
Sbjct: 364 QIGLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 410
>gi|218665361|ref|YP_002427016.1| ribonucleotide-diphosphate reductase subunit beta
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 380
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/342 (72%), Positives = 290/342 (84%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
+ SFER+ +K+IINGH DVNQLVPFKY WAWD+YL++CANHWMPQEI M RDI LWK+
Sbjct: 39 MTSFERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKD 98
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQY+LRQAFEEAIHTHA
Sbjct: 99 PKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHA 158
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVES+GLDE EIFN YHE+ S+RDKD+FL+PFIDVL D FKTG +NDQKLL+SLI
Sbjct: 159 YQYIVESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLI 218
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGID+ N IK+ENP
Sbjct: 219 VFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENP 278
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
LWT F +EI L + +ELE YA+DTMP+G+LGLN F+ Y+++I N R+ Q+G+
Sbjct: 279 QLWTEAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLP 338
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Q +P +NPFPWMSEM+ +KKE NFFETRV EYQ+GG L WE
Sbjct: 339 QQYPGVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 380
>gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
ES-1]
gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
ES-1]
Length = 382
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 254/351 (72%), Positives = 293/351 (83%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L++ T+ S RI +K+IIN DVNQLVPFKY WAW++YL+ CANHWMPQE+NM
Sbjct: 32 LSDCSYTIASTSTGRIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNM 91
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
DI LWKNP GLT++ERRLVKRNLGFF+TADSLAANNI LGTYRHIT PECRQ+LLRQA
Sbjct: 92 SADIALWKNPNGLTDDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQA 151
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
FEEAIHTHAYQYIVESLGLDE E+FN YHE++SIRDKDEFL+PFIDVLT+ FKTG +N
Sbjct: 152 FEEAIHTHAYQYIVESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPEN 211
Query: 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
DQKLL+SLIVFACIMEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMH NFG+D+
Sbjct: 212 DQKLLRSLIVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDV 271
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN IK+ENP+LWT F +E+ L K +ELEY YAEDTMP+G+LGLN FK YLRFIAN
Sbjct: 272 INQIKLENPHLWTPAFREEVRGLIQKGVELEYRYAEDTMPRGVLGLNAGMFKEYLRFIAN 331
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
R +QIG+ ++ NPFPWM+EMI +KKE NFFETRV EYQ+GG L W+
Sbjct: 332 RRCQQIGVDMLYQGATNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 382
>gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 374
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/342 (72%), Positives = 290/342 (84%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
+ SFER+ +K+IINGH DVNQLVPFKY WAWD+YL++CANHWMPQEI M RDI LWK+
Sbjct: 33 MTSFERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKD 92
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQY+LRQAFEEAIHTHA
Sbjct: 93 PKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHA 152
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVES+GLDE EIFN YHE+ S+RDKD+FL+PFIDVL D FKTG +NDQKLL+SLI
Sbjct: 153 YQYIVESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLI 212
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGID+ N IK+ENP
Sbjct: 213 VFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENP 272
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
LWT F +EI L + +ELE YA+DTMP+G+LGLN F+ Y+++I N R+ Q+G+
Sbjct: 273 QLWTEAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLP 332
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Q +P +NPFPWMSEM+ +KKE NFFETRV EYQ+GG L WE
Sbjct: 333 QQYPGVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374
>gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera versatilis 301]
gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera versatilis 301]
Length = 376
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/337 (73%), Positives = 288/337 (85%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++ING TDVNQLVPFKY+WAWD+YL+ CANHWMPQE++M RDI WK+ L+
Sbjct: 40 RVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTALS 99
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER +VKRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQ FEEAIHTHAYQYIV
Sbjct: 100 DDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQGFEEAIHTHAYQYIV 159
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAY EI SI+ KD+FLIPFI+ LTD FKTG + DQ+LL+SLIVFACI
Sbjct: 160 ESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAEADQELLRSLIVFACI 219
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGID+INTIK+ENP+LWT
Sbjct: 220 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLENPHLWTA 279
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI+ L K +ELEY YAE TMP+G+LGLN FK YLRFIAN R QIG+ ++P
Sbjct: 280 EFREEIKTLMQKGVELEYQYAEATMPRGVLGLNATMFKEYLRFIANRRCTQIGLDVLYPG 339
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 340 ATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 376
>gi|344200650|ref|YP_004784976.1| ribonucleotide reductase [Acidithiobacillus ferrivorans SS3]
gi|343776094|gb|AEM48650.1| ribonucleotide reductase [Acidithiobacillus ferrivorans SS3]
Length = 374
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 246/342 (71%), Positives = 289/342 (84%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
+ SFER+ +K+IING DVNQLVPFKY WAWD+YL++CANHWMPQEI M RDI LWK+
Sbjct: 33 MTSFERVRAEDKRIINGCADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKD 92
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQY+LRQAFEEAIHTHA
Sbjct: 93 PKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHA 152
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVES+GLDE EIFN YHE+ S+RDKD+FL+PFID+L D FKTG +NDQKLL+SLI
Sbjct: 153 YQYIVESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDILADPHFKTGTLENDQKLLRSLI 212
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGID+ N IK+ENP
Sbjct: 213 VFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENP 272
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
LWT F +EI L + +ELE YA+DTMP+G+LGLN F+ Y+++I N R+ Q+G+
Sbjct: 273 QLWTEAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVQYIGNRRLVQLGLP 332
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Q +P +NPFPWMSEM+ +KKE NFFETRV EYQ+GG L WE
Sbjct: 333 QQYPGVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374
>gi|384086262|ref|ZP_09997437.1| ribonucleotide-diphosphate reductase subunit beta
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 370
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 246/339 (72%), Positives = 286/339 (84%)
Query: 17 FERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
F R+ +K+IING DVNQLVPFKY WAWD+YL++CANHWMPQEI M RDI LWK+P G
Sbjct: 32 FARVRAEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKG 91
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQY+LRQAFEEAIHTHAYQY
Sbjct: 92 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQY 151
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
IVES+GLDE EIFN YHE+ S+RDKD+FL+PFID+L D FKTG +NDQKLL+SLIVFA
Sbjct: 152 IVESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDILADPNFKTGTLENDQKLLRSLIVFA 211
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGIDL N IK+ENP LW
Sbjct: 212 AIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLANQIKVENPQLW 271
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T F +EI L + +ELE YA+DTMP+G+LGLN FK Y++FI N R+ Q+G+ Q +
Sbjct: 272 TESFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPIFKDYVKFIGNRRLVQLGLPQQY 331
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
P +NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 332 PGVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 370
>gi|253997287|ref|YP_003049351.1| ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
Length = 377
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 247/337 (73%), Positives = 287/337 (85%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++ING TDVNQLVPFKY+WAWD+YL+ CANHWMPQE++M RDI WK+ LT
Sbjct: 41 RVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTALT 100
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER +VKRNLGFF+TADSLAANNIVLGTYRHITAPE RQYLLRQ FEEAIHTHAYQYIV
Sbjct: 101 DDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFEEAIHTHAYQYIV 160
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAY E+ SI+DKD+FLIPFI+ LT+ +FKTG + DQ+LL+SLIVFACI
Sbjct: 161 ESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQQLLRSLIVFACI 220
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMHCNFGID+INTIK+ENP+LWT
Sbjct: 221 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLENPHLWTA 280
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI+ L +ELEY YAE TMP+G+LGLN FK YLRFIAN R +QIG+ ++
Sbjct: 281 EFRDEIKGLIQHGVELEYRYAEATMPRGVLGLNATMFKEYLRFIANRRCQQIGLDVLYQG 340
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFETRV EYQ+GG L W+
Sbjct: 341 ATNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 377
>gi|340783271|ref|YP_004749878.1| ribonucleotide reductase of class Ia (aerobic) subunit beta
[Acidithiobacillus caldus SM-1]
gi|340557422|gb|AEK59176.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus SM-1]
Length = 374
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 292/349 (83%)
Query: 7 NKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+ +++ SFER+ +K+IING DVNQLVPFKY+WAWD+YL++CANHWMPQE+ M R
Sbjct: 26 GRDGSIEAQSFERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMAR 85
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
DI LWK+P GLTE+ERR+VKRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFE
Sbjct: 86 DIALWKDPKGLTEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 145
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EAIHTHAYQYIVES+GLDE EIFN YHE+ SIR KDEFL+PFI LTD F TG +NDQ
Sbjct: 146 EAIHTHAYQYIVESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQ 205
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
KLL+SLIVFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGIDLIN
Sbjct: 206 KLLRSLIVFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLIN 265
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
IK+ENP+LWT F +EI L K +ELE YA+DTMP+GILGLN FK Y+++I N R
Sbjct: 266 QIKVENPDLWTEPFQEEIVSLIRKGVELECAYADDTMPRGILGLNAPIFKDYVKYIGNRR 325
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++Q+G+ + +NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 326 LQQLGLPVQWAGIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374
>gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
Length = 374
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 247/349 (70%), Positives = 292/349 (83%)
Query: 7 NKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+ +++ SFER+ +K+IING DVNQLVPFKY+WAWD+YL++CANHWMPQE+ M R
Sbjct: 26 GRDGSIEAQSFERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMAR 85
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
DI LWK+P GLTE+ERR+VKRNLGFF+TADSLAANNIVLGTYRHITAPECRQYLLRQAFE
Sbjct: 86 DIALWKDPKGLTEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 145
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EAIHTHAYQYIVES+GLDE EIFN YHE+ SIR KDEFL+PFI LTD F TG +NDQ
Sbjct: 146 EAIHTHAYQYIVESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQ 205
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
KLL+SLIVFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGIDLIN
Sbjct: 206 KLLRSLIVFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLIN 265
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
IK+ENP+LWT F +EI L K +ELE YA+DTMP+G+LGLN FK Y+++I N R
Sbjct: 266 QIKVENPDLWTEPFQEEIVSLIRKGVELECAYADDTMPRGVLGLNAPIFKDYVKYIGNRR 325
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++Q+G+ + +NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 326 LQQLGLPVQWAGIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374
>gi|340782863|ref|YP_004749470.1| ribonucleoside-diphosphate reductase subunit beta
[Acidithiobacillus caldus SM-1]
gi|340557014|gb|AEK58768.1| ribonucleoside-diphosphate reductase, beta subunit
[Acidithiobacillus caldus SM-1]
Length = 342
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 246/342 (71%), Positives = 291/342 (85%)
Query: 14 INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
++ F R+ +K+IING DVNQLVPF+Y WAWD+YL++CANHWMPQEI M RDI LWK+
Sbjct: 1 MSDFTRVRAEDKRIINGTADVNQLVPFRYQWAWDKYLAACANHWMPQEIQMSRDITLWKD 60
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA
Sbjct: 61 PKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 120
Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
YQYIVESLGLDE EIFN YHE+ S+RDKD+FL+PFID+L D FKTGN +NDQKLL+SLI
Sbjct: 121 YQYIVESLGLDEGEIFNMYHEVPSVRDKDQFLMPFIDILADPNFKTGNLENDQKLLRSLI 180
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGID+ N IK+ENP
Sbjct: 181 VFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMSNQIKLENP 240
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+LWT EF +EI L + +ELE YA+DTMP+G+LGLN FK Y++FI N R++Q+G+
Sbjct: 241 HLWTEEFQEEIVSLIRRGVELECAYADDTMPRGVLGLNAPMFKDYVKFIGNRRLQQLGLP 300
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ NPFPWMSEM+ +KKE NFFETRV EYQ+GG+L+W+
Sbjct: 301 AQWSGIPNPFPWMSEMLDLKKEKNFFETRVTEYQTGGSLNWD 342
>gi|340783867|ref|YP_004750473.1| ribonucleotide reductase of class Ia (aerobic) subunit beta
[Acidithiobacillus caldus SM-1]
gi|340558020|gb|AEK59773.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus SM-1]
Length = 375
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/353 (70%), Positives = 293/353 (83%), Gaps = 2/353 (0%)
Query: 5 LNNKKKTLKINSFE--RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEI 62
L+N++K ++ + R+ +K+IING DVNQLVPFKY WAWD+YL++CANHWMPQE+
Sbjct: 22 LSNERKEFRMENLATARVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEV 81
Query: 63 NMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLR 122
M RDI LWK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLR
Sbjct: 82 QMARDIALWKDPKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLR 141
Query: 123 QAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNT 182
QAFEEAIHTHAYQYIVESLGLDE EIFN YHE+ S+R KDEFLIPFI+ L D F+TG
Sbjct: 142 QAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTR 201
Query: 183 KNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGI 242
+NDQKLL+SLIVFA IMEGLFFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGI
Sbjct: 202 ENDQKLLRSLIVFATIMEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGI 261
Query: 243 DLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFI 302
DLIN IK+ENP LWT F +EI +L K +ELE YA+DTMP+GILGLN FK Y+ +I
Sbjct: 262 DLINQIKLENPQLWTEAFQQEIIELIRKGVELECAYADDTMPRGILGLNAPMFKEYVHYI 321
Query: 303 ANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
N R+ QIG+K + +NPFPWMSEM+ +KKE NFFE+RV +YQ+GG L W+
Sbjct: 322 GNRRLSQIGLKPQWENVQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 374
>gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
MED105]
gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
MED105]
Length = 399
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 244/337 (72%), Positives = 285/337 (84%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K++ING TDVNQLVPFKY WAW++YLS CANHWMPQEINM RDI LWK+P GLT
Sbjct: 63 RVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIALWKDPNGLT 122
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAF+EAIHTHAYQYIV
Sbjct: 123 EDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAIHTHAYQYIV 182
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+ E E FNAY+EI I+ KD+FL+PFIDVLTD FKTG + DQ LLKSLI FACI
Sbjct: 183 ESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLLKSLIAFACI 242
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEG+FFYVGFVQILALGRQNKMIG++E +QYILRDES HC FGIDLINT+K+ENP+LWT
Sbjct: 243 MEGMFFYVGFVQILALGRQNKMIGAAEQFQYILRDESAHCTFGIDLINTVKLENPHLWTP 302
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI+ +F KA+ELE+ YA DTMP+G+LGLN F Y++FI N R QIG+ ++
Sbjct: 303 EFKEEIKAMFRKAVELEHAYAVDTMPRGVLGLNSAQFMEYMKFICNRRSNQIGLGTLYEG 362
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE+NFFE RV EYQ+GG L W+
Sbjct: 363 ATNPFPWMSEMMDLKKETNFFERRVTEYQTGGALSWD 399
>gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
Length = 345
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 246/337 (72%), Positives = 284/337 (84%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IING DVNQLVPFKY WAWD+YL++CANHWMPQE+ M RDI LWK+P GLT
Sbjct: 8 RVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPKGLT 67
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV
Sbjct: 68 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 127
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN YHE+ S+R KDEFLIPFI+ L D F+TG +NDQKLL+SLIVFA I
Sbjct: 128 ESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVFATI 187
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGIDLIN IK+ENP LWT
Sbjct: 188 MEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTE 247
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI L + +ELE YA+DTMP+GILGLN FK Y+R+I N R+ QIG+K +
Sbjct: 248 GFQQEIVGLIRQGVELECAYADDTMPRGILGLNAPMFKEYVRYIGNRRLSQIGLKPQWEN 307
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSEM+ +KKE NFFE+RV +YQ+GG L W+
Sbjct: 308 VQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 344
>gi|302877617|ref|YP_003846181.1| ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
ES-2]
gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
ES-2]
Length = 365
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/337 (73%), Positives = 286/337 (84%), Gaps = 1/337 (0%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN DVNQLVPFKY WAW++YL++CANHWMPQE+NM DI LWK+ L+
Sbjct: 30 RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKSD-KLS 88
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERRL+KRNLGFF+TADSLAANNIVLG+YRHIT PECRQ+LLRQAFEEAIHTHAYQYIV
Sbjct: 89 DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN YHE+ SIR+KDEFL+P+IDVLT+ +FKTG + DQ LL+SLIVFACI
Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFACI 208
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
MEGLFFYVGFVQILALGRQNKM G++E YQYILRDESMH NFG+DLIN IKMENP+LWT
Sbjct: 209 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDLINQIKMENPHLWTA 268
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI L K +ELEY YAEDTMP+GILGLN FK YLRFIAN R +QIG+ ++
Sbjct: 269 AFREEIRGLMQKGVELEYAYAEDTMPRGILGLNATMFKEYLRFIANRRCQQIGVDILYQG 328
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEMI +KKE NFFE+RV EYQ+GGTL W+
Sbjct: 329 ATNPFPWMSEMIDLKKEKNFFESRVTEYQTGGTLSWD 365
>gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis MSMB43]
Length = 303
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/303 (79%), Positives = 264/303 (87%)
Query: 53 CANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT 112
CANHWMPQEINM RDI LWK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHIT
Sbjct: 1 CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60
Query: 113 APECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVL 172
APECRQ+LLRQAFEEAIHTHAYQYIVESLGLDE EIFNAYHE+ +IR KDEFLIPFI L
Sbjct: 61 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120
Query: 173 TDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILR 232
TD F TG + DQKLLKSLIVFACIMEGLFFYVGF QILALGRQNKM G++E YQYILR
Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILR 180
Query: 233 DESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
DESMHCNFGIDLIN IK+ENP+LWT EF EI +LF A++LEY YAEDTMP+G+LGLN
Sbjct: 181 DESMHCNFGIDLINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNA 240
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
FKSYLRFI+N R +QIG+ +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L
Sbjct: 241 SMFKSYLRFISNRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL 300
Query: 353 DWE 355
WE
Sbjct: 301 SWE 303
>gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
Length = 328
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/291 (78%), Positives = 258/291 (88%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+N K+IING TDVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P GL
Sbjct: 20 KRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMARDIALWKDPNGL 79
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI
Sbjct: 80 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 139
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGL+E EIFNAYHE++SIRDKDEFLIPFID LTD FKTG +ND+KLLKSLIVFAC
Sbjct: 140 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDRKLLKSLIVFAC 199
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEGLFFYVGF QILA+GRQNKM G++E YQYILRDES+HCNFGIDLIN IK+ENP+LWT
Sbjct: 200 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 259
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
EF EI +LF +A++LEY YAEDTMP+G+LGLN FK YLRFI N R +
Sbjct: 260 AEFKVEITELFKQAVDLEYRYAEDTMPRGVLGLNASMFKGYLRFICNRRCR 310
>gi|388456664|ref|ZP_10138959.1| ribonucleotide-diphosphate reductase subunit beta [Fluoribacter
dumoffii Tex-KL]
Length = 364
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 222/337 (65%), Positives = 271/337 (80%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ +K+IIN D+NQLVPFKY WAWD+YL++CANHWMP EINM D+ LWK+P GLT
Sbjct: 27 RIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEINMSADVALWKDPNGLT 86
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY++
Sbjct: 87 EAERMIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVI 146
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y EI S+ K + +PF L D F TG +NDQ+LL+ LI F I
Sbjct: 147 ESLGLDEAEVFNMYREIPSVATKAAWALPFTQSLGDETFHTGTLENDQRLLRDLIAFYVI 206
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 207 FEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIKIENPHLWTP 266
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ QL + +ELEY YA+DTMP+GILG+N + F+ YL FIAN R+ QIG+ +P
Sbjct: 267 EFKEEMIQLIRQGVELEYQYAKDTMPQGILGMNAEMFEEYLHFIANRRLNQIGLPDQYPG 326
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 327 ATNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 363
>gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
pneumophila str. Paris]
gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris]
Length = 367
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/346 (65%), Positives = 275/346 (79%), Gaps = 1/346 (0%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
+TL++ + RI+ +KQIIN D+NQLVPFKY WAWD+YL++CANHWMP EI+M D+
Sbjct: 21 ETLEMGA-ARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVA 79
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
LWK+P GLTE+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+
Sbjct: 80 LWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAL 139
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HTHAYQYI+ESLGLDE E+FN Y EI S+ K + +PF L D F TG +NDQ+LL
Sbjct: 140 HTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQRLL 199
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249
+ LI F + EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK
Sbjct: 200 RDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIK 259
Query: 250 MENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQ 309
+ENP+LWT EF EI QL + +ELEY YA DTMP GILG+N + F+ YL FIAN R+ Q
Sbjct: 260 IENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRLNQ 319
Query: 310 IGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IG+ +P NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 320 IGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|397664229|ref|YP_006505767.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Legionella pneumophila subsp.
pneumophila]
gi|395127640|emb|CCD05839.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Legionella pneumophila subsp.
pneumophila]
Length = 367
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/346 (65%), Positives = 275/346 (79%), Gaps = 1/346 (0%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
+TL++ + RI+ +KQIIN D+NQLVPFKY WAWD+YL++CANHWMP EI+M D+
Sbjct: 21 ETLEMGA-ARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVA 79
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
LWK+P GLTE+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+
Sbjct: 80 LWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAL 139
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HTHAYQYI+ESLGLDE E+FN Y EI S+ K + +PF L D F TG +NDQ+LL
Sbjct: 140 HTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQRLL 199
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249
+ LI F + EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK
Sbjct: 200 RDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIK 259
Query: 250 MENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQ 309
+ENP+LWT EF EI QL + +ELEY YA DTMP GILG+N + F+ YL FIAN R+ Q
Sbjct: 260 IENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRLNQ 319
Query: 310 IGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IG+ +P NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 320 IGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
pneumophila str. Lens]
gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens]
Length = 367
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 223/337 (66%), Positives = 269/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ +KQIIN D+NQLVPFKY WAWD+YL++CANHWMP EI+M D+ LWK+P GLT
Sbjct: 29 RIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVALWKDPYGLT 88
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQYI+
Sbjct: 89 EDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYII 148
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y EI S+ K + +PF L D F TG +NDQ+LL+ LI F +
Sbjct: 149 ESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQRLLRDLIAFYVV 208
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 209 FEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIKIENPHLWTP 268
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI QL + +ELEY YA DTMP GILG+N + F+ YL FIAN R+ QIG+ +P
Sbjct: 269 EFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRLNQIGLPDQYPG 328
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 329 AENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
longbeachae D-4968]
gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
longbeachae NSW150]
gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
longbeachae D-4968]
gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit
[Legionella longbeachae NSW150]
Length = 366
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 219/337 (64%), Positives = 273/337 (81%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ +K+IIN D+NQLVPFKY WAWD+YL++CANHWMP EI+M D+ LWK+P GLT
Sbjct: 28 RIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVALWKDPNGLT 87
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY++
Sbjct: 88 EAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVI 147
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y EI S+ K + +P+ L D F TG +NDQ+LL+ LI F +
Sbjct: 148 ESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVENDQRLLRDLIAFYVV 207
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK+ENP+LWT+
Sbjct: 208 FEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIKIENPHLWTS 267
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI QL + ++LEY YA+DTMP+GILG+N + F+ YL FIAN R+ QIG+ + +P
Sbjct: 268 EFKEEIIQLIRQGVDLEYQYAKDTMPQGILGMNAEMFEEYLHFIANRRLTQIGLAEQYPG 327
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 328 AVNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364
>gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|378777636|ref|YP_005186074.1| ribonucleoside-diphosphate reductase subunit beta [Legionella
pneumophila subsp. pneumophila ATCC 43290]
gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|364508451|gb|AEW51975.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
pneumophila subsp. pneumophila ATCC 43290]
Length = 381
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/346 (64%), Positives = 275/346 (79%), Gaps = 1/346 (0%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
+TL++ + RI+ +KQIIN D+NQLVPFKY WAWD+YL++CANHWMP EI+M D+
Sbjct: 35 ETLEMGA-ARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVA 93
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
LWK+P GLTE+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+
Sbjct: 94 LWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAL 153
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HTHAYQYI+ESLGLDE E+FN Y EI S+ K + +PF L D F TG +NDQ+LL
Sbjct: 154 HTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQRLL 213
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249
+ LI F + EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK
Sbjct: 214 RDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIK 273
Query: 250 MENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQ 309
+ENP+LWT EF E+ QL + +ELEY YA DTMP GILG+N + F+ YL FIAN R+ Q
Sbjct: 274 IENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRLNQ 333
Query: 310 IGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IG+ +P NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 334 IGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 379
>gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella
pneumophila str. Corby]
gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase subunit beta [Legionella
pneumophila 2300/99 Alcoy]
gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
pneumophila str. Corby]
gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella
pneumophila 2300/99 Alcoy]
gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b]
Length = 367
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/346 (64%), Positives = 275/346 (79%), Gaps = 1/346 (0%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
+TL++ + RI+ +KQIIN D+NQLVPFKY WAWD+YL++CANHWMP EI+M D+
Sbjct: 21 ETLEMGA-ARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVA 79
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
LWK+P GLTE+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+
Sbjct: 80 LWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAL 139
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HTHAYQYI+ESLGLDE E+FN Y EI S+ K + +PF L D F TG +NDQ+LL
Sbjct: 140 HTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQRLL 199
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249
+ LI F + EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK
Sbjct: 200 RDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIK 259
Query: 250 MENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQ 309
+ENP+LWT EF E+ QL + +ELEY YA DTMP GILG+N + F+ YL FIAN R+ Q
Sbjct: 260 IENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRLNQ 319
Query: 310 IGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IG+ +P NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 320 IGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|397667502|ref|YP_006509039.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Legionella pneumophila subsp.
pneumophila]
gi|395130913|emb|CCD09162.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Legionella pneumophila subsp.
pneumophila]
Length = 367
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/346 (64%), Positives = 275/346 (79%), Gaps = 1/346 (0%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
+TL++ + RI+ +KQIIN D+NQLVPFKY WAWD+YL++CANHWMP EI+M D+
Sbjct: 21 ETLEMGA-ARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSADVA 79
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
LWK+P GLTE+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+
Sbjct: 80 LWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAL 139
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HTHAYQYI+ESLGLDE E+FN Y EI S+ K + +PF L D F TG +NDQ+LL
Sbjct: 140 HTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQRLL 199
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249
+ LI F + EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK
Sbjct: 200 RDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIK 259
Query: 250 MENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQ 309
+ENP+LWT EF E+ QL + +ELEY YA DTMP GILG+N + F+ YL FIAN R+ Q
Sbjct: 260 IENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRLNQ 319
Query: 310 IGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IG+ +P NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 320 IGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|344343974|ref|ZP_08774840.1| ribonucleotide reductase [Marichromatium purpuratum 984]
gi|343804585|gb|EGV22485.1| ribonucleotide reductase [Marichromatium purpuratum 984]
Length = 434
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 221/337 (65%), Positives = 268/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN H D+NQLVPFKY+WAW +YL +CANHWMPQEINM DI LWK+P GLT
Sbjct: 97 RIRVDDKRIINCHADLNQLVPFKYDWAWQKYLDACANHWMPQEINMNADIALWKDPKGLT 156
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY+V
Sbjct: 157 EDERTIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVV 216
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ ++ K E+ +P+ L D F TG T NDQ+LL+ LI F I
Sbjct: 217 ESLGLDEGEIFNMYRELPAVARKAEWALPYTRHLADPHFVTGTTTNDQQLLRELIAFYVI 276
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQ+L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 277 FEGIFFYVGFVQVLSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKLENPHLWTP 336
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ + +A+ELE YA DTMP+G+LGLN F+ YLRFIAN R QIG+ + +P
Sbjct: 337 EFRDELVAMIREAVELESQYARDTMPRGVLGLNAPMFEEYLRFIANRRCAQIGLPEQYPG 396
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 397 VTNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 433
>gi|381156537|ref|ZP_09865776.1| ribonucleotide reductase, beta subunit [Thiorhodovibrio sp. 970]
gi|380881874|gb|EIC23959.1| ribonucleotide reductase, beta subunit [Thiorhodovibrio sp. 970]
Length = 476
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 216/337 (64%), Positives = 266/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN H D+NQLVPFKY+WAW +YL +CANHWMPQEINM DI LWK+P GLT
Sbjct: 140 RIRVDDKRIINCHADLNQLVPFKYDWAWQKYLDACANHWMPQEINMNADIALWKDPNGLT 199
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY+V
Sbjct: 200 DDERTIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVV 259
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ S+ K E+ +PF L D FKTG ND++LL+ ++ F I
Sbjct: 260 ESLGLDEGEIFNMYREVPSVARKAEWALPFTQYLADPHFKTGTPANDRRLLREMVAFYVI 319
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQ+L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW+
Sbjct: 320 FEGIFFYVGFVQVLSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKVENPHLWSD 379
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E+ + +A+ELE YA DTMP+G+LGLN F YL FIAN R QIG+ + +P
Sbjct: 380 AFKQELSDMITEAVELEAQYAHDTMPRGVLGLNAPMFAEYLHFIANRRCAQIGLAEPYPG 439
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 440 ATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 476
>gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
Length = 412
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 223/338 (65%), Positives = 265/338 (78%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ERI +K+IIN H D+NQLVPFKY WAW +YL CANHWMPQEINM DI LWK+P GL
Sbjct: 75 ERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNADIALWKDPNGL 134
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +VKRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY
Sbjct: 135 TEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYC 194
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFN Y E+ S+ K E+ +PF L D F+TG + DQKLL+ LI F
Sbjct: 195 VESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEADQKLLRELIAFYV 254
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+ EG+FFYVGFVQIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 255 VFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQIKVENPHLWT 314
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF E+ L A+ELE YA DTMP+G+LG+N + F+ YL FIAN R QIG+ +++P
Sbjct: 315 EEFKNEMRTLISDAVELEAQYARDTMPRGVLGMNAQMFEEYLHFIANRRCAQIGLAEMYP 374
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 375 GADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412
>gi|374260754|ref|ZP_09619348.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
drancourtii LLAP12]
gi|363538920|gb|EHL32320.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
drancourtii LLAP12]
Length = 369
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 219/337 (64%), Positives = 270/337 (80%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ +K+IIN D+NQLVPFKY WAWD+YLS+CANHWMP EI+M D+ LWK+P GLT
Sbjct: 28 RIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEISMSADVALWKDPNGLT 87
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY++
Sbjct: 88 DDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVI 147
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y EI S+ K + +P+ L D F TG +NDQ+LL+ LI F I
Sbjct: 148 ESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIENDQRLLRDLIAFYVI 207
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF QIL++GR+NKM+G+SE +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 208 FEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQIKIENPHLWTP 267
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI QL + +EY YA+DTMP GILG+N + F+ YL FIAN R+ QIG+ + +P
Sbjct: 268 EFKEEIIQLIKDGVAMEYQYAKDTMPHGILGMNAEMFEEYLHFIANRRLNQIGLPEQYPG 327
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 328 AENPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364
>gi|350562594|ref|ZP_08931427.1| ribonucleotide reductase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349778933|gb|EGZ33282.1| ribonucleotide reductase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 413
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/338 (65%), Positives = 265/338 (78%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ERI +K+IIN D+NQLVPFKY WAW +YL CANHWMPQEINM DI LWK+P GL
Sbjct: 76 ERIRVDDKKIINCRADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNADIALWKDPNGL 135
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER++VKRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY
Sbjct: 136 TEDERQIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYC 195
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFN Y E+ S+ K E+ +PF L D F TG +NDQKLL+ LI F
Sbjct: 196 VESLGLDEGEIFNMYREVPSVARKAEWALPFTRHLADPHFHTGTPENDQKLLRELIAFYV 255
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
I EG+FFYVGFVQIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LWT
Sbjct: 256 IFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQIKIENPQLWT 315
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ + +A+ELE YA DTMP+G+LG+N F+ YL FIAN R QIG+ +++P
Sbjct: 316 PEFKQEMADMIREAVELEAQYARDTMPRGVLGMNAGMFEEYLHFIANRRCAQIGLPELYP 375
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 376 GADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 413
>gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
180]
gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
180]
Length = 458
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 270/337 (80%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IIN D+NQLVPFKY+WAW +YL +CANHWMPQEI+M D+ LWK+P GLT
Sbjct: 122 RVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLT 181
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY+V
Sbjct: 182 EDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVV 241
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ ++ K E+ +PF L D F+TG +NDQKLL+ L+ F I
Sbjct: 242 ESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLRELVAFYVI 301
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 302 FEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTP 361
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + +A+ELE YA DTMP+G+LGLN + F+ YL FIAN R QIG+ + +P
Sbjct: 362 EFRQELVGMIREAVELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIGLPEQYPG 421
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L+W+
Sbjct: 422 ASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 458
>gi|220935777|ref|YP_002514676.1| ribonucleotide-diphosphate reductase subunit beta [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 408
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/338 (65%), Positives = 263/338 (77%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ERI +K+IIN D+NQLVPFKY WAW +YL CANHWMPQEINM DI LWK+P GL
Sbjct: 71 ERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMNADIALWKDPNGL 130
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +VKRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY
Sbjct: 131 TEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYC 190
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFN Y E+ ++ K E+ +PF L D F TG +NDQKLL+ LI F
Sbjct: 191 VESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPENDQKLLRELIAFYV 250
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
I EG+FFYVGFVQIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 251 IFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQIKVENPHLWT 310
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
F +E+ + A+ELE YA DTMP+G+LG+N F+ YL FIAN R QIG+ +I+P
Sbjct: 311 AAFKEEMRTMIRDAVELEAQYARDTMPRGVLGMNAAMFEEYLHFIANRRCAQIGLAEIYP 370
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 371 GAENPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 408
>gi|345873584|ref|ZP_08825489.1| ribonucleotide reductase [Thiorhodococcus drewsii AZ1]
gi|343917066|gb|EGV27879.1| ribonucleotide reductase [Thiorhodococcus drewsii AZ1]
Length = 461
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 268/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IIN H D+NQLVPFKY+WAW +YL +CANHWMPQEINM DI LWK+P GLT
Sbjct: 125 RVRVDDKRIINCHADLNQLVPFKYDWAWQKYLDACANHWMPQEINMNADIALWKDPNGLT 184
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY+V
Sbjct: 185 EDERTIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVV 244
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ ++ K E+ +PF L D F TG ++DQ+LL+ L+ F +
Sbjct: 245 ESLGLDEGEIFNMYRELPAVARKAEWALPFTRHLADPHFHTGTPESDQRLLRELVAFYVV 304
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 305 FEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTP 364
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F +++ + +A+ELE YA DTMP+G+LGLN FK YL FIAN R QIG+ + +
Sbjct: 365 DFKQDLVHMIREAVELEAQYAHDTMPRGVLGLNASMFKEYLHFIANRRCAQIGLPEQYAG 424
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L+W+
Sbjct: 425 ATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 461
>gi|406942475|gb|EKD74700.1| hypothetical protein ACD_44C00359G0003 [uncultured bacterium]
Length = 345
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/337 (65%), Positives = 267/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI KQIIN D+NQLVPFKY+WAW++YL++CANHWMPQEINM D+ +WK+P GL+
Sbjct: 5 RIRVDEKQIINCRADLNQLVPFKYHWAWEKYLAACANHWMPQEINMAADVAVWKDPRGLS 64
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRN+GFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQYI+
Sbjct: 65 DDERLIIKRNMGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYII 124
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN YHEI S+ K E+ +PF L D FKTG + DQ+LL+ LI F I
Sbjct: 125 ESLGLDEAEIFNMYHEIPSVAKKAEWALPFTLSLGDPFFKTGTLQTDQRLLRDLIAFYVI 184
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF QIL++GR+N M G+SE QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 185 FEGIFFYVGFTQILSMGRRNIMTGTSEQLQYILRDESMHLNFGIDVINQIKIENPHLWTK 244
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF KEI + + +ELEY YA DTMP GILG+N + FK YL +IAN R QIG+ + +
Sbjct: 245 EFQKEIINMIKEGVELEYQYAIDTMPNGILGMNAEMFKEYLHYIANRRYTQIGLAEQYAN 304
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+GGTL WE
Sbjct: 305 ASNPFPWMSEMVDLKKEKNFFETRVIEYQTGGTLSWE 341
>gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii Q321]
gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii CbuK_Q154]
gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii Q321]
gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
CbuK_Q154]
Length = 401
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/337 (64%), Positives = 267/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN H D+NQLVPFKY WAW +YLS CANHWMP EINM DI LWK+P GLT
Sbjct: 64 RIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTADIALWKDPNGLT 123
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER +VKR+LGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQYI+
Sbjct: 124 ADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEEALHTHAYQYII 183
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ ++ K + +P+ L D FKTG ++D++LL+ LI F +
Sbjct: 184 ESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRRLLRDLIAFYVV 243
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EGLFFYVGF QILA+GR+ KM G+SE +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 244 FEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQIKIENPHLWNK 303
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F KE+ ++ L+ +ELEY YA+DTMP+GILGLN FK YL++IAN R QIG+ + FP
Sbjct: 304 NFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRCAQIGLPEQFPG 363
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+N FPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 364 AKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400
>gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii RSA 493]
gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii Dugway 5J108-111]
gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii RSA 331]
gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
RSA 493]
gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
Dugway 5J108-111]
gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii RSA 331]
Length = 401
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/337 (64%), Positives = 267/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN H D+NQLVPFKY WAW +YLS CANHWMP EINM DI LWK+P GLT
Sbjct: 64 RIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTADIALWKDPNGLT 123
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER +VKR+LGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQYI+
Sbjct: 124 ADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEEALHTHAYQYII 183
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ ++ K + +P+ L D FKTG ++D++LL+ LI F +
Sbjct: 184 ESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRRLLRDLIAFYVV 243
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EGLFFYVGF QILA+GR+ KM G+SE +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 244 FEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQIKIENPHLWNK 303
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F KE+ ++ L+ +ELEY YA+DTMP+GILGLN FK YL++IAN R QIG+ + FP
Sbjct: 304 NFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRCAQIGLPEQFPG 363
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+N FPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 364 AKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400
>gi|430761600|ref|YP_007217457.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430011224|gb|AGA33976.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 412
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/338 (65%), Positives = 264/338 (78%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ERI +K+IIN D+NQLVPFKY WAW +YL CANHWMPQEINM DI LWK+P GL
Sbjct: 75 ERIRVDDKKIINCRADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNADIALWKDPNGL 134
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +VKRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY
Sbjct: 135 TEDERIIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYC 194
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE EIFN Y E+ S+ K E+ +PF L D F TG ++DQKLL+ LI F
Sbjct: 195 VESLGLDEGEIFNMYREVPSVARKAEWALPFTRHLADPHFHTGTPEDDQKLLRELIAFYV 254
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
I EG+FFYVGFVQIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LWT
Sbjct: 255 IFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQIKIENPQLWT 314
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ + +A+ELE YA DTMP+G+LG+N F+ YL FIAN R QIG+ +++P
Sbjct: 315 PEFKQEMADMIREAVELEAQYARDTMPRGVLGMNAGMFEEYLHFIANRRCAQIGLPELYP 374
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 375 GADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412
>gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii CbuG_Q212]
gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
CbuG_Q212]
Length = 401
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/337 (64%), Positives = 267/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN H D+NQLVPFKY WAW +YLS CANHWMP EINM DI LWK+P GLT
Sbjct: 64 RIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTADIALWKDPNGLT 123
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER +VKR+LGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQYI+
Sbjct: 124 ADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEEALHTHAYQYII 183
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ ++ K + +P+ L D FKTG ++D++LL+ LI F +
Sbjct: 184 ESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRRLLRDLIAFYVV 243
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EGLFFYVGF QILA+GR+ KM G+SE +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 244 FEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQIKIENPHLWNK 303
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F KE+ ++ L+ +ELEY YA+DTMP+GILGLN FK YL++IAN R QIG+ + FP
Sbjct: 304 NFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRCAQIGLPEQFPG 363
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+N FPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct: 364 AKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400
>gi|344337445|ref|ZP_08768379.1| Ribonucleoside-diphosphate reductase [Thiocapsa marina 5811]
gi|343802398|gb|EGV20338.1| Ribonucleoside-diphosphate reductase [Thiocapsa marina 5811]
Length = 467
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 213/337 (63%), Positives = 268/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IIN H D+NQLVPFKY WAW +YL +CANHWMPQEINM DI LWK+P GLT
Sbjct: 131 RVRVDDKKIINCHADLNQLVPFKYEWAWQKYLDACANHWMPQEINMNADIALWKDPNGLT 190
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLGFFSTADSL ANN+VL YRHI+ PECRQYLLRQ+FEEA+HTHAYQY+V
Sbjct: 191 DDERTIIKRNLGFFSTADSLVANNLVLAVYRHISNPECRQYLLRQSFEEALHTHAYQYVV 250
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ S+ K E+ +P+ L D FKTG +ND+KLL+ L+ F I
Sbjct: 251 ESLGLDEGEIFNMYREVPSVARKAEWALPYTQHLADPHFKTGTPENDRKLLRELVAFYVI 310
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQ+L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW+
Sbjct: 311 FEGIFFYVGFVQVLSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWSP 370
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + A+ +E YA DTMP+G+LGLN F+ YL+FIAN R QIG+ + +P
Sbjct: 371 EFKQELITMIRDAVTMESRYAHDTMPRGVLGLNAPMFEEYLQFIANRRCAQIGLPEQYPG 430
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L+W+
Sbjct: 431 ASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 467
>gi|390950589|ref|YP_006414348.1| ribonucleotide reductase subunit beta [Thiocystis violascens DSM
198]
gi|390427158|gb|AFL74223.1| ribonucleotide reductase, beta subunit [Thiocystis violascens DSM
198]
Length = 462
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 213/337 (63%), Positives = 266/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IIN D+NQLVPFKY+WAW +YL +CANHWMPQEINM DI LW++P GLT
Sbjct: 126 RVRVDDKKIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEINMNADIALWRDPNGLT 185
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER +VKRNLGFFSTADSL ANN+VL YRHI+ PECRQYLLRQAFEEA+HTHAYQY+V
Sbjct: 186 DDERTIVKRNLGFFSTADSLVANNLVLAVYRHISNPECRQYLLRQAFEEALHTHAYQYVV 245
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ S+ K E+ +P+ L D F TG +NDQ LL+ L+ F I
Sbjct: 246 ESLGLDEGEIFNMYREVPSVARKAEWALPYTQHLADPHFNTGTRENDQTLLRELVAFYVI 305
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQ+L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 306 FEGIFFYVGFVQVLSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTP 365
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + A+ +E YA DTMP+G+LGLN F+ YL+FIAN R QIG+ + +P
Sbjct: 366 EFREELVTMIRDAVAMESRYAHDTMPRGVLGLNAPMFEEYLQFIANRRCAQIGLPEQYPG 425
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L+W+
Sbjct: 426 ASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 462
>gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
Length = 412
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/354 (62%), Positives = 270/354 (76%), Gaps = 4/354 (1%)
Query: 6 NNKKKTLKINSFE----RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQE 61
NN L + E RI +K+IIN D+NQLVPFKY+WAW++YLS CANHWMPQE
Sbjct: 59 NNGTGVLGVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQE 118
Query: 62 INMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLL 121
INM DI LWK+ GLTE+ER ++KRNLGFF TADSL ANN+VL YRHIT PECRQYLL
Sbjct: 119 INMNADIALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLL 178
Query: 122 RQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181
RQAFEEA+HTHAYQY VESLGLDE EIFN Y E+ ++ K E+ +PF L D +F TG
Sbjct: 179 RQAFEEAVHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGT 238
Query: 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
+NDQKLL+ LI F I EG+FFYVGFVQIL++GR+NKM G++E +QYI+RDESMH NFG
Sbjct: 239 AENDQKLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFG 298
Query: 242 IDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRF 301
ID+IN IK+ENP+LW+ F +E ++ +A+ LE YA DTMP+G+LGLN F+ YL+F
Sbjct: 299 IDVINQIKLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKF 358
Query: 302 IANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IAN R QIG+ + +P NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 359 IANRRCAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412
>gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus
oceani ATCC 19707]
gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
oceani AFC27]
gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
19707]
gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
oceani AFC27]
Length = 412
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/354 (62%), Positives = 270/354 (76%), Gaps = 4/354 (1%)
Query: 6 NNKKKTLKINSFE----RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQE 61
NN L + E RI +K+IIN D+NQLVPFKY+WAW++YLS CANHWMPQE
Sbjct: 59 NNGTGVLGVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQE 118
Query: 62 INMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLL 121
INM DI LWK+ GLTE+ER ++KRNLGFF TADSL ANN+VL YRHIT PECRQYLL
Sbjct: 119 INMNADIALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLL 178
Query: 122 RQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181
RQAFEEA+HTHAYQY VESLGLDE EIFN Y E+ ++ K E+ +PF L D +F TG
Sbjct: 179 RQAFEEAVHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGT 238
Query: 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
+NDQKLL+ LI F I EG+FFYVGFVQIL++GR+NKM G++E +QYI+RDESMH NFG
Sbjct: 239 AENDQKLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFG 298
Query: 242 IDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRF 301
ID+IN IK+ENP+LW+ F +E ++ +A+ LE YA DTMP+G+LGLN F+ YL+F
Sbjct: 299 IDVINQIKLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKF 358
Query: 302 IANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IAN R QIG+ + +P NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 359 IANRRCAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412
>gi|392954207|ref|ZP_10319759.1| ribonucleotide-diphosphate reductase subunit beta
[Hydrocarboniphaga effusa AP103]
gi|391858106|gb|EIT68636.1| ribonucleotide-diphosphate reductase subunit beta
[Hydrocarboniphaga effusa AP103]
Length = 360
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 211/337 (62%), Positives = 267/337 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ +K+IIN D+NQLVPFKY WAW++YL++C NHWMPQE+ M DI LW +P GLT
Sbjct: 24 RIHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACNNHWMPQEVGMSADIALWNDPKGLT 83
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KR+LGFFSTADSL ANN+VL Y+HIT PECRQY+LRQAFEEAIHTHAYQYI+
Sbjct: 84 EDERMIIKRSLGFFSTADSLVANNLVLAVYKHITNPECRQYILRQAFEEAIHTHAYQYII 143
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + +P+ L D F TG +NDQ+LL+ +I F +
Sbjct: 144 ESLGLDEAEVFNMYREVPSIHDKAAWSLPYTQSLADENFHTGTPENDQRLLRDMIAFYVV 203
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQ+L+ GR+NKM+G+SE QYI+RDE+MH NFGID+IN IK+ENP+LWT
Sbjct: 204 FEGIFFYVGFVQLLSFGRRNKMVGASEQIQYIMRDEAMHMNFGIDVINQIKIENPHLWTA 263
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E ++ ++A ELE YA DTMP+G+LGLN F Y+++IAN R QIG+K+I+P
Sbjct: 264 EFQEEARKMIVEATELEIRYAHDTMPRGVLGLNASMFNEYMQYIANRRCNQIGLKEIYPG 323
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE+I +KKE NFFETRV EYQ+GG L W+
Sbjct: 324 AENPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 360
>gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus
capsulatus str. Bath]
gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus
capsulatus str. Bath]
Length = 403
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 265/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN D+NQLVPFKY WAW +YL +CANHWMPQEINM DI LWK+ GLT
Sbjct: 67 RIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNADIALWKSADGLT 126
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY+V
Sbjct: 127 PDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVV 186
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ ++ K E+ +PF L D FKTG +NDQKLL+ LI F I
Sbjct: 187 ESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQKLLRELIAFYVI 246
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF QIL++GR+NKM G++E +QYI+RDESMH NFGID+IN IK+ENP+LWT
Sbjct: 247 FEGIFFYVGFTQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQIKVENPHLWTD 306
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F E+ Q+ +A+++E YA DTMP+GILGLN FK YL+FIAN R QIG+ + +P
Sbjct: 307 GFKVEMVQMIREAVDIETQYAYDTMPRGILGLNAPMFKEYLQFIANRRCAQIGLPEQYPG 366
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GGTL W+
Sbjct: 367 ASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLSWD 403
>gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
Length = 415
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 264/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN D+NQLVPFKY+WAW++YL+ CANHWMPQEINM DI LWK+ GLT
Sbjct: 79 RIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADIALWKSADGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFF TADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY V
Sbjct: 139 EDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAVHTHAYQYCV 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ ++ K E+ +PF L D +F TG +NDQKLL+ LI F I
Sbjct: 199 ESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKLLRELIAFYVI 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQIL++GR+NKM G++E +QYI+RDESMH NFGID+IN IK+ENP+LWT
Sbjct: 259 FEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQIKIENPHLWTD 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E Q+ +A+ LE YA DTMP+G+LGLN F YL+FIAN R QIG+ + +P
Sbjct: 319 SFKQETIQMIREAVSLETQYAYDTMPRGVLGLNAPMFDEYLKFIANRRCAQIGLPEQYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GG L W+
Sbjct: 379 ASNPFPWMSEILDLKKEKNFFETRVTEYQTGGALKWD 415
>gi|406936748|gb|EKD70395.1| hypothetical protein ACD_46C00544G0007 [uncultured bacterium]
Length = 359
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 213/337 (63%), Positives = 265/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ +K+IIN D+NQLVPFKY WAW +YL +CANHWMP EINM D+ LWK+P GLT
Sbjct: 22 RIHVDDKKIINCRADLNQLVPFKYQWAWKKYLDACANHWMPNEINMSADVSLWKDPHGLT 81
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY++
Sbjct: 82 EDERMIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVI 141
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + + L D F TG +NDQ+LL+ LI F I
Sbjct: 142 ESLGMDEAEVFNMYREVPSVSRKAVWSLKYTQSLGDPMFSTGTPENDQRLLRDLIAFYVI 201
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF Q+L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 202 FEGIFFYVGFTQVLSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWTE 261
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +EI + + ++LEY YA DTMP+GILGLN + FK YL+FIAN R QIG+ I+
Sbjct: 262 EFKQEIINMIREGVDLEYLYANDTMPRGILGLNAEMFKDYLQFIANRRCAQIGLPPIYSG 321
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 322 AENPFPWMSEIMDLKKEKNFFETRVIEYQTGGALTWD 358
>gi|333899975|ref|YP_004473848.1| ribonucleoside-diphosphate reductase [Pseudomonas fulva 12-X]
gi|333115240|gb|AEF21754.1| Ribonucleoside-diphosphate reductase [Pseudomonas fulva 12-X]
Length = 418
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 208/341 (60%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 78 GSSARVEVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSA 137
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 138 DGLTEDERRIVKRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 197
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D KF+TG + D++ LK+LI
Sbjct: 198 QYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPKFETGTPETDRQFLKNLIA 257
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 258 YYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPH 317
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 318 LWDATMKDEATQMILQGAQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 377
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 378 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 418
>gi|359781509|ref|ZP_09284733.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
psychrotolerans L19]
gi|359370573|gb|EHK71140.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
psychrotolerans L19]
Length = 416
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 207/341 (60%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R++ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI WK+
Sbjct: 76 GSSARVHVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIATWKSA 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 DGLTEDERRIVKRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +FKTG + D++ LK+LI
Sbjct: 196 QYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPEFKTGTPETDRQFLKNLIA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPQ 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW + E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGATNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|431931059|ref|YP_007244105.1| ribonucleotide reductase subunit beta [Thioflavicoccus mobilis
8321]
gi|431829362|gb|AGA90475.1| ribonucleotide reductase, beta subunit [Thioflavicoccus mobilis
8321]
Length = 415
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 208/337 (61%), Positives = 265/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN D+NQLVPFKY WAW +YL +CANHWMPQEINM DI LWK+P L
Sbjct: 79 RVRVDDKRLINCRADLNQLVPFKYEWAWRKYLDACANHWMPQEINMNADIALWKDPHELG 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLGFF+TADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY+V
Sbjct: 139 DDERTIIKRNLGFFATADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVV 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE EIFN Y E+ S+ K E+ +P+ L D F+TG +NDQ+LL+ L+ F +
Sbjct: 199 ESLGLDEGEIFNMYREVPSVARKAEWALPYTQHLADPHFQTGTPENDQRLLRELVAFYVV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGFVQ+L++GR+NKM G++E +QYILRDESMH NFGID+IN I++ENP+LWT
Sbjct: 259 FEGIFFYVGFVQVLSMGRRNKMTGTAEEFQYILRDESMHMNFGIDVINQIRIENPHLWTA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +++ + +A+ LE YA DTMP+G+LGLN F+ YL FIAN R QIG+ + +P
Sbjct: 319 AFKEDLVAMIREAVALEAQYARDTMPRGVLGLNAPMFEEYLGFIANRRCAQIGLPEQYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV EYQ+GGTL+W+
Sbjct: 379 ATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLNWD 415
>gi|406940864|gb|EKD73511.1| hypothetical protein ACD_45C00296G0011 [uncultured bacterium]
Length = 361
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 209/337 (62%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN D+NQLVPFKY WAW +YL +CANHWMP EINM D+ LWK+P GLT
Sbjct: 24 RIQVDDKRIINCRADLNQLVPFKYKWAWQKYLDACANHWMPNEINMSADVALWKDPHGLT 83
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +++RNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQ+++
Sbjct: 84 EDERIMIERNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQHVI 143
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE ++FN Y E+ ++ K + +P+ L D F TG ++DQ+LL+ LI F +
Sbjct: 144 ESLGMDEGKVFNMYRELPAVARKAAWSLPYTQSLGDPHFHTGTPESDQRLLRDLIAFYVV 203
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF Q+L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 204 FEGIFFYVGFTQVLSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWTE 263
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI + +ELEY YA DTMP+GILG+N + FK YL FIAN R QIG+ Q F
Sbjct: 264 HFKQEILDMIHSGVELEYTYAVDTMPRGILGMNAEMFKEYLHFIANRRCAQIGLTQQFSG 323
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV EYQ+GG L+W+
Sbjct: 324 ATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALNWD 360
>gi|339493624|ref|YP_004713917.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|338800996|gb|AEJ04828.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 415
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ LK+LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLKNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|443471932|ref|ZP_21061969.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Pseudomonas pseudoalcaligenes KF707]
gi|442902157|gb|ELS27798.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Pseudomonas pseudoalcaligenes KF707]
Length = 415
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/341 (60%), Positives = 265/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 75 GSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSK 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GL+E+ERR+VKR+LGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 DGLSEDERRIVKRSLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D KF+TG + D++ L++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPKFETGTPETDRQFLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW + E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGASNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
protegens Pf-5]
gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
protegens Pf-5]
Length = 415
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 207/341 (60%), Positives = 263/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP
Sbjct: 75 GSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNP 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI
Sbjct: 195 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|386020286|ref|YP_005938310.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri DSM 4166]
gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri DSM 4166]
Length = 415
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHE+ S+ K + + + ++D F+TG + D++ LK+LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLKNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWNA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fluorescens Pf0-1]
gi|398973632|ref|ZP_10684474.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM25]
gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
fluorescens Pf0-1]
gi|398142584|gb|EJM31477.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM25]
Length = 416
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 263/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 196 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|404399295|ref|ZP_10990879.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fuscovaginae UPB0736]
Length = 415
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFNTGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri A1501]
gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501]
Length = 415
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ LK+LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLKNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNASMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|409431276|ref|ZP_11262650.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
HYS]
Length = 415
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 263/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP
Sbjct: 75 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNP 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 EGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLSYTRAISDPEFNTGTVETDKELLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|409397757|ref|ZP_11248620.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
Chol1]
gi|409117891|gb|EKM94317.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
Chol1]
Length = 415
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ L++LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|419954853|ref|ZP_14470987.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri TS44]
gi|387968240|gb|EIK52531.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri TS44]
Length = 415
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ L++LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|398916195|ref|ZP_10657642.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM49]
gi|398934028|ref|ZP_10666105.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM48]
gi|398159438|gb|EJM47739.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM48]
gi|398175266|gb|EJM63029.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM49]
Length = 415
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|431927835|ref|YP_007240869.1| ribonucleotide reductase subunit beta [Pseudomonas stutzeri RCH2]
gi|431826122|gb|AGA87239.1| ribonucleotide reductase, beta subunit [Pseudomonas stutzeri RCH2]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ L++LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|429332141|ref|ZP_19212873.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida CSV86]
gi|428763191|gb|EKX85374.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida CSV86]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P
Sbjct: 75 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSP 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 EGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +FKTG + D++LL++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLRYTRSISDPEFKTGTVETDKELLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|388467770|ref|ZP_10141980.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
synxantha BG33R]
gi|388011350|gb|EIK72537.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
synxantha BG33R]
Length = 416
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++L+
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLVA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|418292661|ref|ZP_12904592.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379064075|gb|EHY76818.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 420
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 84 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 143
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 144 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 203
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG D++ L++LI + C+
Sbjct: 204 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPDTDKQFLRNLIAYYCV 263
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 264 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 323
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 324 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 383
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 384 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 420
>gi|330811278|ref|YP_004355740.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|378952395|ref|YP_005209883.1| protein NrdB [Pseudomonas fluorescens F113]
gi|423698834|ref|ZP_17673324.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens Q8r1-96]
gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|359762409|gb|AEV64488.1| NrdB [Pseudomonas fluorescens F113]
gi|387996527|gb|EIK57857.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens Q8r1-96]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fluorescens SBW25]
gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
fluorescens SBW25]
Length = 416
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++L+
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLVA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|402699277|ref|ZP_10847256.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fragi A22]
Length = 416
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|410093865|ref|ZP_11290330.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
viridiflava UASWS0038]
gi|409758713|gb|EKN43986.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
viridiflava UASWS0038]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|395496570|ref|ZP_10428149.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
PAMC 25886]
gi|395795292|ref|ZP_10474600.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
Ag1]
gi|395340515|gb|EJF72348.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
Ag1]
Length = 416
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++L+
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLVA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fluorescens SBW25]
gi|388467956|ref|ZP_10142166.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
synxantha BG33R]
gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain
[Pseudomonas fluorescens SBW25]
gi|388011536|gb|EIK72723.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
synxantha BG33R]
Length = 416
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/341 (60%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++L+
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLVA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|399006899|ref|ZP_10709419.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM17]
gi|425900984|ref|ZP_18877575.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397883127|gb|EJK99613.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398121557|gb|EJM11185.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM17]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aesculi str. 2250]
gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. syringae 642]
gi|422581173|ref|ZP_16656316.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|422596443|ref|ZP_16670725.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|422616741|ref|ZP_16685446.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. japonica str. M301072]
gi|422680996|ref|ZP_16739267.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|424073291|ref|ZP_17810709.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|440722533|ref|ZP_20902911.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae BRIP34876]
gi|440729377|ref|ZP_20909557.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae BRIP34881]
gi|440745081|ref|ZP_20924379.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae BRIP39023]
gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. japonica str. M301072]
gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|407996272|gb|EKG36751.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|440358700|gb|ELP96040.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae BRIP34881]
gi|440361121|gb|ELP98363.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae BRIP34876]
gi|440373161|gb|ELQ09929.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae BRIP39023]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|397687574|ref|YP_006524893.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri DSM 10701]
gi|395809130|gb|AFN78535.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri DSM 10701]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GL+
Sbjct: 79 RVHVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSPDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F TG + D++ L++LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTVETDKEFLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 AMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|452750357|ref|ZP_21950107.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri NF13]
gi|452005730|gb|EMD98012.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri NF13]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F TG + D++ L++LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDKQFLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 ATNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|398896559|ref|ZP_10647637.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM55]
gi|398178323|gb|EJM65975.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM55]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|398999698|ref|ZP_10702433.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM18]
gi|398131320|gb|EJM20639.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM18]
Length = 416
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. syringae B728a]
gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|422667870|ref|ZP_16727730.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|424068858|ref|ZP_17806307.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|443642839|ref|ZP_21126689.1| Ribonucleotide-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. syringae B64]
gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
syringae B728a]
gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|407996204|gb|EKG36688.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|443282856|gb|ELS41861.1| Ribonucleotide-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. syringae B64]
Length = 415
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|398865077|ref|ZP_10620601.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM78]
gi|398871825|ref|ZP_10627134.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM74]
gi|398956993|ref|ZP_10677053.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM33]
gi|426411084|ref|YP_007031183.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
UW4]
gi|398149088|gb|EJM37747.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM33]
gi|398205008|gb|EJM91799.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM74]
gi|398244039|gb|EJN29613.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM78]
gi|426269301|gb|AFY21378.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
UW4]
Length = 415
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|406902419|gb|EKD44825.1| Ribonucleoside-diphosphate reductase beta chain [uncultured
bacterium]
Length = 360
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 265/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN D+NQLVPFKY WAWD+YL++CANHWMP EINM D+ LWK+P GLT
Sbjct: 22 RIQVDDKKIINCRADLNQLVPFKYKWAWDKYLNACANHWMPNEINMAADVALWKDPNGLT 81
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KR+LGFF+TADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTH+YQ+I+
Sbjct: 82 EDERTIIKRSLGFFATADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHSYQHII 141
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ S+ K + +P+ L+D F TG +N+Q+L++ LI F +
Sbjct: 142 ESLGLDEAEVFNMYREVPSVAKKASWALPYTQSLSDPDFHTGTLENNQRLVRDLIAFYVV 201
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
E +FFYVGF QILA+GR+ KM G+SE +QYILRDESMH NFGID+IN IK+ENP++W+
Sbjct: 202 FESIFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHANFGIDVINQIKIENPDIWSK 261
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F K+ + + ++LE YA DTMP+GILGLN + FK YL++IAN R Q+G+ + +P
Sbjct: 262 DFQKQAIHMIREGVDLELQYARDTMPRGILGLNAELFKDYLQYIANRRCAQLGLTEQYPG 321
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 322 VENPFPWMSEMMDLKKEKNFFETRVIEYQTGGALSWD 358
>gi|389682201|ref|ZP_10173544.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
chlororaphis O6]
gi|388554075|gb|EIM17325.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
chlororaphis O6]
Length = 415
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|398964052|ref|ZP_10680033.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM30]
gi|424924439|ref|ZP_18347800.1| Ribonucleotide reductase, beta subunit [Pseudomonas fluorescens
R124]
gi|398148887|gb|EJM37551.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM30]
gi|404305599|gb|EJZ59561.1| Ribonucleotide reductase, beta subunit [Pseudomonas fluorescens
R124]
Length = 416
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|399521497|ref|ZP_10762237.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110735|emb|CCH38797.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 416
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 80 RVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSTDGLS 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 EDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D KF TG + D++ L++LI + C+
Sbjct: 200 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPKFNTGTPETDRQFLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 QMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|392420823|ref|YP_006457427.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri CCUG 29243]
gi|390983011|gb|AFM33004.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri CCUG 29243]
Length = 415
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 79 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ L++LI + C+
Sbjct: 199 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 DMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
grylli]
gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
grylli]
Length = 362
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 210/346 (60%), Positives = 269/346 (77%), Gaps = 1/346 (0%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
+TL++ + R++ +K+IIN D+NQLVPFKY WAW++YL++CANHWMPQEINM DI
Sbjct: 17 ETLEVGA-ARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSADIA 75
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
LW++ GL E+ER +V+R+LGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+
Sbjct: 76 LWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAL 135
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HTHAYQY++ESLG+DE IFN Y E+ ++ K E+ +PF L D F+TG + DQ+LL
Sbjct: 136 HTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQRLL 195
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249
+ LI F + EG+FFYVGF QIL++GRQNKM G++E +QYILRDESMH NFGID+IN IK
Sbjct: 196 RDLIAFYVVFEGIFFYVGFSQILSMGRQNKMTGTAEQFQYILRDESMHLNFGIDVINQIK 255
Query: 250 MENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQ 309
+ENP+LWT EF + + L + ++LEY YA DT+P+GILGLN YLRFI N R Q
Sbjct: 256 LENPHLWTPEFKRYVINLIKEGVDLEYQYALDTLPRGILGLNANLMWDYLRFIGNRRFTQ 315
Query: 310 IGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
IG+ + +P NP PWMSE+I +KKE NFFETRV EYQ+GG+L+W+
Sbjct: 316 IGLAEQYPGVSNPLPWMSEIIDLKKEKNFFETRVTEYQTGGSLNWD 361
>gi|372268741|ref|ZP_09504789.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas sp.
S89]
Length = 429
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 204/336 (60%), Positives = 264/336 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI K+IIN D+NQLVPFKY+WAW +YL CANHWMPQE+NM +D+ +WK+P GLT
Sbjct: 94 RIQVDEKRIINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNKDVSMWKDPNGLT 153
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V+ +LG+FSTADSL ANN+VL YRHIT PECRQY+LRQ+FEEAIHTHAYQY V
Sbjct: 154 EDERRIVEYSLGYFSTADSLVANNLVLAIYRHITNPECRQYILRQSFEEAIHTHAYQYCV 213
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + ++D FKTG + DQ+LL++LI F +
Sbjct: 214 ESLGMDEGEVFNMYREVPSVAKKAAWSLAHTGSISDPNFKTGTVETDQELLRNLIAFYAV 273
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 274 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWTE 333
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F +E+ Q+ L+ +ELE YA DTMP+G+LG+N + YL FIAN R+ Q+G+K+ FP
Sbjct: 334 KFQQEVTQMILEGMELEVAYARDTMPRGVLGMNAAMMEEYLHFIANRRLSQLGLKEQFPG 393
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W
Sbjct: 394 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALQW 429
>gi|398991359|ref|ZP_10694502.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM24]
gi|399013179|ref|ZP_10715491.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM16]
gi|398114394|gb|EJM04217.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM16]
gi|398140706|gb|EJM29667.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM24]
Length = 416
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|429215135|ref|ZP_19206297.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
M1]
gi|428154362|gb|EKX00913.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
M1]
Length = 415
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 264/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 75 GSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSK 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GL+E+ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 DGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F+TG + D++ L++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDRQFLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW + E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|416006306|ref|ZP_11561085.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Acidithiobacillus sp. GGI-221]
gi|339836390|gb|EGQ63986.1| ribonucleotide-diphosphate reductase subunit beta
[Acidithiobacillus sp. GGI-221]
Length = 293
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 212/292 (72%), Positives = 247/292 (84%)
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M RDI LWK+P GLTE+ERR+VKRNLGFF TADSLAANNIVLGTYRHITAPECRQY+LRQ
Sbjct: 2 MSRDIALWKDPKGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQ 61
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
AFEEAIHTHAYQYIVES+GLDE EIFN YHE+ S+RDKD+FL+PFIDVL D FKTG +
Sbjct: 62 AFEEAIHTHAYQYIVESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLE 121
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
NDQKLL+SLIVFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFGID
Sbjct: 122 NDQKLLRSLIVFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGID 181
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
+ N IK+ENP LWT F +EI L + +ELE YA+DTMP+G+LGLN F+ Y+++I
Sbjct: 182 MANQIKVENPQLWTEAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIG 241
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
N R+ Q+G+ Q +P +NPFPWMSEM+ +KKE NFFETRV EYQ+GG L WE
Sbjct: 242 NRRLVQLGLPQQYPGVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 293
>gi|398842327|ref|ZP_10599514.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM102]
gi|398859227|ref|ZP_10614907.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM79]
gi|398902607|ref|ZP_10651146.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM50]
gi|398106001|gb|EJL96063.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM102]
gi|398178239|gb|EJM65892.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM50]
gi|398237368|gb|EJN23121.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM79]
Length = 416
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
Length = 416
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++L+ + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLVAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|416017950|ref|ZP_11564987.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. B076]
gi|416028631|ref|ZP_11571576.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422404186|ref|ZP_16481240.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. race 4]
gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. B076]
gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 415
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL C+NHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|387895209|ref|YP_006325506.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
fluorescens A506]
gi|387162541|gb|AFJ57740.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens A506]
Length = 416
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++L+ + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLVAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|398993832|ref|ZP_10696767.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM21]
gi|398133740|gb|EJM22925.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM21]
Length = 416
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|423093976|ref|ZP_17081772.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens Q2-87]
gi|397885854|gb|EJL02337.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens Q2-87]
Length = 415
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 79 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|421502701|ref|ZP_15949654.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina DLHK]
gi|400346685|gb|EJO95042.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina DLHK]
Length = 416
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 80 RVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSTDGLS 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 EDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F TG + D++ LK+LI + C+
Sbjct: 200 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDRQFLKNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 QMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|398876923|ref|ZP_10632073.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM67]
gi|398886940|ref|ZP_10641775.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM60]
gi|398935869|ref|ZP_10666715.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM41(2012)]
gi|398168966|gb|EJM56963.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM41(2012)]
gi|398186686|gb|EJM74053.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM60]
gi|398203381|gb|EJM90203.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM67]
Length = 416
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|28868867|ref|NP_791486.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. tomato T1]
gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato Max13]
gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato K40]
gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422647081|ref|ZP_16710212.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|422658132|ref|ZP_16720568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. tomato T1]
gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 415
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|407363291|ref|ZP_11109823.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mandelii JR-1]
Length = 416
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|423691505|ref|ZP_17666025.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens SS101]
gi|387999263|gb|EIK60592.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens SS101]
Length = 416
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++L+ + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLVAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|447916474|ref|YP_007397042.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas poae
RE*1-1-14]
gi|445200337|gb|AGE25546.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas poae
RE*1-1-14]
Length = 416
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/341 (60%), Positives = 263/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK P
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKTP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++L+
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLVA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|421615754|ref|ZP_16056774.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri KOS6]
gi|409782290|gb|EKN61855.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri KOS6]
Length = 370
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 34 RVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSKDGLS 93
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL TYR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 94 EDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEAIHTHAYQYCI 153
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ L++LI + C+
Sbjct: 154 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQFLRNLIAYYCV 213
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 214 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 273
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 274 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 333
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 334 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 370
>gi|423693162|ref|ZP_17667682.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens SS101]
gi|387997487|gb|EIK58816.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens SS101]
Length = 416
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++L+ + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLVAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|422297661|ref|ZP_16385293.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
avellanae BPIC 631]
gi|422592219|ref|ZP_16666841.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422653512|ref|ZP_16716276.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|407990861|gb|EKG32852.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
avellanae BPIC 631]
Length = 415
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus
degradans 2-40]
gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
[Saccharophagus degradans 2-40]
Length = 423
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 206/338 (60%), Positives = 261/338 (77%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ERI +K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM D+ WK+P GL
Sbjct: 86 ERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADVATWKSPDGL 145
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+E+ERR++ R+LG+FSTADSL ANN+VL YRHIT PE RQYLLRQAFEEAIHTHAYQY
Sbjct: 146 SEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEAIHTHAYQYC 205
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + I ++D FKTG + DQ+LL++LI F
Sbjct: 206 IESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPEADQELLRNLIGFYV 265
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
I EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 266 ITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWT 325
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF E +Q+ L+ ELE YA DTMP+G+LG+N + YL FIAN RM Q+G+ + +P
Sbjct: 326 EEFQAETKQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLHFIANRRMAQLGLAEAYP 385
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L WE
Sbjct: 386 GAKNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 423
>gi|447917969|ref|YP_007398537.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas poae
RE*1-1-14]
gi|445201832|gb|AGE27041.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas poae
RE*1-1-14]
Length = 416
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 205/341 (60%), Positives = 262/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK P
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKTP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++L+
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLVA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|398853621|ref|ZP_10610218.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM80]
gi|398239074|gb|EJN24791.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM80]
Length = 416
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 262/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+P GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKDPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++LI + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKELLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina NK-01]
gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina NK-01]
Length = 416
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 263/337 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 80 RVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSTDGLS 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 EDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D +F+TG + D++ L++LI + C+
Sbjct: 200 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDRQFLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 QMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PAO1]
gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2]
gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa UCBPP-PA14]
gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PA7]
gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa LESB58]
gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PAb1]
gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa 39016]
gi|386059939|ref|YP_005976461.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa M18]
gi|386064968|ref|YP_005980272.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa NCGM2.S1]
gi|392985360|ref|YP_006483947.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa DK2]
gi|416858082|ref|ZP_11913140.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa 138244]
gi|416873135|ref|ZP_11917259.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa 152504]
gi|418583376|ref|ZP_13147445.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa MPAO1/P1]
gi|418594613|ref|ZP_13158396.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa MPAO1/P2]
gi|419752308|ref|ZP_14278716.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PADK2_CF510]
gi|420140844|ref|ZP_14648573.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa CIG1]
gi|421155347|ref|ZP_15614825.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa ATCC 14886]
gi|421162136|ref|ZP_15621023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa ATCC 25324]
gi|421169361|ref|ZP_15627381.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa ATCC 700888]
gi|421175791|ref|ZP_15633463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa CI27]
gi|421181858|ref|ZP_15639345.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa E2]
gi|421515783|ref|ZP_15962469.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PAO579]
gi|424940363|ref|ZP_18356126.1| tyrosyl radical-harboring component of class Ia ribonucleotide
reductase [Pseudomonas aeruginosa NCMG1179]
gi|451987191|ref|ZP_21935349.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Pseudomonas aeruginosa 18A]
gi|452877694|ref|ZP_21954956.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa VRFPA01]
gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa PAO1]
gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7]
gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa]
gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa 39016]
gi|334839849|gb|EGM18520.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa 138244]
gi|334845271|gb|EGM23835.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa 152504]
gi|346056809|dbj|GAA16692.1| tyrosyl radical-harboring component of class Ia ribonucleotide
reductase [Pseudomonas aeruginosa NCMG1179]
gi|347306245|gb|AEO76359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa M18]
gi|348033527|dbj|BAK88887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa NCGM2.S1]
gi|375043006|gb|EHS35641.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa MPAO1/P2]
gi|375046984|gb|EHS39533.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa MPAO1/P1]
gi|384401318|gb|EIE47673.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PADK2_CF510]
gi|392320865|gb|AFM66245.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa DK2]
gi|403246409|gb|EJY60136.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa CIG1]
gi|404349511|gb|EJZ75848.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PAO579]
gi|404520731|gb|EKA31392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa ATCC 14886]
gi|404526567|gb|EKA36773.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa ATCC 700888]
gi|404531569|gb|EKA41509.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa CI27]
gi|404536974|gb|EKA46596.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa ATCC 25324]
gi|404543122|gb|EKA52423.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa E2]
gi|451754809|emb|CCQ87872.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Pseudomonas aeruginosa 18A]
gi|452185585|gb|EME12603.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa VRFPA01]
gi|453048304|gb|EME96017.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PA21_ST175]
Length = 415
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 263/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 75 GSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSK 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GL+E+ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 DGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ L++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDRQFLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW + E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|388543422|ref|ZP_10146713.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
M47T1]
gi|388278734|gb|EIK98305.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
M47T1]
Length = 415
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 262/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI W+NP
Sbjct: 75 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIATWRNP 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 EGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTPETDKELLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAELKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|355647945|ref|ZP_09055338.1| hypothetical protein HMPREF1030_04424 [Pseudomonas sp. 2_1_26]
gi|354827616|gb|EHF11761.1| hypothetical protein HMPREF1030_04424 [Pseudomonas sp. 2_1_26]
Length = 415
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 263/341 (77%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 75 GSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSK 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GL+E+ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 DGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D F+TG + D++ L++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDRQFLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW + E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina ymp]
gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp]
Length = 416
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +KQ+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GL+
Sbjct: 80 RVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSTDGLS 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 EDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F TG + D++ LK+LI + C+
Sbjct: 200 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDRQFLKNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 QMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
mobilis Nb-231]
gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
mobilis Nb-231]
Length = 370
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 207/337 (61%), Positives = 257/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN D+NQLVPFKY+WAW++YL ANHWMPQEI M RDIELWK GLT
Sbjct: 34 RIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRDIELWKRRDGLT 93
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKR+LGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY++
Sbjct: 94 EDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVI 153
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE E+FN Y E+ S+ K E+ +PF + L D F+TG DQ+LL+ LI F
Sbjct: 154 ESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQRLLRDLIAFYVC 213
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF Q+LA+GR+NKM G++E +QYILRDES+H NFGID+IN IK ENP+LWT
Sbjct: 214 FEGIFFYTGFAQVLAMGRRNKMTGTAEQFQYILRDESIHLNFGIDVINQIKQENPHLWTA 273
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF ++ L+++ LE YA DT+P+G+LGLN + YLRFI N R+ QIG+ + FP
Sbjct: 274 EFQATAQRTILESMALEVDYARDTLPRGVLGLNAAMIEEYLRFITNRRLAQIGLTEAFPG 333
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NP PWMSE++ +KKE NFFETRV EY++GG L WE
Sbjct: 334 AENPLPWMSELVDLKKEKNFFETRVTEYRTGGALSWE 370
>gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC1989]
gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC1989]
Length = 444
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/355 (58%), Positives = 267/355 (75%), Gaps = 4/355 (1%)
Query: 5 LNNKKKTLKINSFE----RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQ 60
+NN T I E R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQ
Sbjct: 90 INNIDPTPGIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQ 149
Query: 61 EINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYL 120
E+NM DI LWK+P GL+++ERR++ R+LG+FSTADSL ANN+VL YR IT PECRQYL
Sbjct: 150 EVNMTADISLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYL 209
Query: 121 LRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTG 180
LRQAFEEAIHTHAYQY +ESLG+DE EIFN Y E+ S+ +K + I ++D F TG
Sbjct: 210 LRQAFEEAIHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTG 269
Query: 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNF 240
T+ DQ+LL++LI F + EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NF
Sbjct: 270 TTETDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNF 329
Query: 241 GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLR 300
GID+IN IK+ENP+LWT EF E+ Q+ L+ ELE YA DTMP+G+LG+N + YL+
Sbjct: 330 GIDIINQIKLENPHLWTEEFKAEVTQMVLEGTELEIAYARDTMPRGVLGMNAAMMEEYLQ 389
Query: 301 FIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
FI+N R+ Q+G+ + +P +NPFPWMSE++ ++KE NFFETRV+EYQ+GG L WE
Sbjct: 390 FISNRRLAQLGLTEQYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWE 444
>gi|386288750|ref|ZP_10065890.1| ribonucleotide-diphosphate reductase subunit beta [gamma
proteobacterium BDW918]
gi|385278305|gb|EIF42277.1| ribonucleotide-diphosphate reductase subunit beta [gamma
proteobacterium BDW918]
Length = 412
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/336 (60%), Positives = 264/336 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K+IIN H D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI +WKNP GLT
Sbjct: 77 RLRVEDKRIINCHLDLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIAMWKNPEGLT 136
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++ R+LG+FSTADSL ANN+VL YRHIT PECRQYLLRQAFEEAIHTHAYQY V
Sbjct: 137 DDERRIIMRSLGYFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEAIHTHAYQYCV 196
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ SI K + + L D F TG + DQ+LL++LI F +
Sbjct: 197 ESLGMDEAEVFNMYRELPSIAKKAAWSLQHTQALGDPNFHTGTPETDQELLRNLIGFYAV 256
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW+
Sbjct: 257 TEGIFFYCGFTQILSMGRRNKMTGIAEQFQYILRDESMHLNFGIDMINQIKLENPHLWSE 316
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F E+ Q+ ++ ++LE YA+D+MP+G+LG+N + YL+FIAN R+ Q+G+K+ FP
Sbjct: 317 KFQGEVTQMIVEGMQLEIEYAKDSMPRGVLGMNSGMMEEYLQFIANRRLSQLGLKEQFPG 376
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W
Sbjct: 377 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTW 412
>gi|387894088|ref|YP_006324385.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
fluorescens A506]
gi|387162031|gb|AFJ57230.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens A506]
Length = 416
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 80 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++L+ + C+
Sbjct: 200 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLVAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+E +FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LERIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 320 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|422608794|ref|ZP_16680757.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. mori str. 301020]
gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. mori str. 301020]
Length = 415
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+N DI LWKNP GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNKTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL A+N+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 319 EMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 379 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida F1]
gi|395447642|ref|YP_006387895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida ND6]
gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1]
gi|388561639|gb|AFK70780.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida ND6]
Length = 415
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 75 GSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSQ 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|410664109|ref|YP_006916480.1| ribonucleotide-diphosphate reductase subunit beta [Simiduia
agarivorans SA1 = DSM 21679]
gi|410664125|ref|YP_006916496.1| ribonucleotide-diphosphate reductase subunit beta [Simiduia
agarivorans SA1 = DSM 21679]
gi|409026466|gb|AFU98750.1| ribonucleotide-diphosphate reductase subunit beta [Simiduia
agarivorans SA1 = DSM 21679]
gi|409026482|gb|AFU98766.1| ribonucleotide-diphosphate reductase subunit beta [Simiduia
agarivorans SA1 = DSM 21679]
Length = 413
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN D+NQLVPFKY WAW +YL CANHWMPQEINM D+ LWK+ GLT
Sbjct: 77 RVQVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEINMTADVALWKSNDGLT 136
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V R+LG+FSTADSL ANN+VL YR IT PECRQY+LRQ FEEAIHTHAYQY +
Sbjct: 137 EDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQGFEEAIHTHAYQYCI 196
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ +K + + L+D FKTG + DQ+LL++LI F +
Sbjct: 197 ESLGMDEGEVFNMYRELPSVANKAAWSLKHTQSLSDPTFKTGTPETDQELLRNLIAFYVV 256
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QILA+GR+NKM G SE +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 257 TEGIFFYCGFTQILAMGRRNKMTGVSEQFQYILRDESMHLNFGIDVINQIKLENPHLWTA 316
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ Q+ L+ ELE YA D+MP+G+LG+N T + YL FIAN R+ Q+G+ + FP
Sbjct: 317 EFKQEVVQMVLEGTELEIAYARDSMPRGVLGMNAATMEEYLHFIANRRLAQLGLGEQFPG 376
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L WE
Sbjct: 377 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 413
>gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
TJI-51]
gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
TJI-51]
Length = 416
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 76 GSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSQ 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 196 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter
vinelandii DJ]
gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter
vinelandii DJ]
Length = 416
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 260/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQEINM DI LWK+ GLT
Sbjct: 80 RVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNADIALWKSADGLT 139
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 140 EDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQAFEEAIHTHAYQYCI 199
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + ++D F TG + D++LL++LI + C+
Sbjct: 200 ESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPETDRQLLRNLIAYYCV 259
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 260 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKIENPHLWDA 319
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + +P
Sbjct: 320 EMKDEATQMILQGTQLEIEYARDTMPRGVLGMNATMMEDYLKFIANRRLSQLGLPEQYPG 379
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 380 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida W619]
gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619]
Length = 416
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 76 GSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSQ 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 196 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
entomophila L48]
gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
entomophila L48]
Length = 415
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 75 GSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSM 134
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 135 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 194
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 195 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 254
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 255 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 314
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 315 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 374
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 375 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|398847008|ref|ZP_10603950.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM84]
gi|398252007|gb|EJN37222.1| ribonucleotide reductase, beta subunit [Pseudomonas sp. GM84]
Length = 416
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 76 GSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSM 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 196 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida KT2440]
gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida GB-1]
gi|386010828|ref|YP_005929105.1| protein NrdB [Pseudomonas putida BIRD-1]
gi|397696778|ref|YP_006534661.1| ribonucleotide-diphosphate reductase subunit bet [Pseudomonas
putida DOT-T1E]
gi|421524168|ref|ZP_15970793.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida LS46]
gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440]
gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1]
gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1]
gi|397333508|gb|AFO49867.1| ribonucleotide-diphosphate reductase subunit bet [Pseudomonas
putida DOT-T1E]
gi|402751979|gb|EJX12488.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida LS46]
Length = 416
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 76 GSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSQ 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 196 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|431804029|ref|YP_007230932.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida HB3267]
gi|430794794|gb|AGA74989.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida HB3267]
Length = 416
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 76 GSSARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSM 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 196 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 316 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 375
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 376 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|339488929|ref|YP_004703457.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida S16]
gi|338839772|gb|AEJ14577.1| ribonucleotide-diphosphate reductase, beta subunit [Pseudomonas
putida S16]
Length = 425
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 204/341 (59%), Positives = 261/341 (76%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+
Sbjct: 85 GSGARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSM 144
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLTE+ERR+V RNLGFFSTADSL ANN+ L YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 145 DGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAY 204
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESLG+DE EIFN YHEI S+ K + + + ++D +F TG + D++LL++LI
Sbjct: 205 QYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIA 264
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 265 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 324
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LW +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+
Sbjct: 325 LWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKE 384
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 385 EYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 425
>gi|422593622|ref|ZP_16667914.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 388
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 258/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ KQ+IN DVNQLVPFKY WAW +YL C+NHWMPQE+NM DI LWK+P GLT
Sbjct: 52 RVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQEVNMSADIALWKDPNGLT 111
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLG+FSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY V
Sbjct: 112 DDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCV 171
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLD+ EIFN Y E+ S+ K + I +D +TD F+TG + D LK+LI + C+
Sbjct: 172 ESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTGTVEADTTFLKNLIAYYCV 231
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF Q L++GR+NK++G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 232 TEGIFFYCGFTQTLSMGRRNKLVGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWTD 291
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E +E + ++ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+ +++
Sbjct: 292 ELKREATVMIIQGTQLEIAYARDTMPRGVLGMNAAMMEEYLQFIANRRLTQIGLPEVYAG 351
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 352 AKNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 388
>gi|406040983|ref|ZP_11048338.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
ursingii DSM 16037 = CIP 107286]
Length = 427
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/357 (59%), Positives = 266/357 (74%), Gaps = 4/357 (1%)
Query: 2 SIKLNNKKKTLKINSFE----RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHW 57
S L N T+ + E R+ +K +IN D+NQLVPFKY WAW +YL CANHW
Sbjct: 71 SESLKNLDITVGLEELETGANRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHW 130
Query: 58 MPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECR 117
MPQE+NM DI LWK+ GLTE+ER ++KRNLGFFSTADSL ANN+VL YR IT PECR
Sbjct: 131 MPQEVNMNHDIALWKSENGLTEDERIIIKRNLGFFSTADSLVANNLVLAIYRLITNPECR 190
Query: 118 QYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKF 177
QY+LRQAFEEAIHTHAYQY +ESLG+DE EIFN YHEI S+ K + + + L+D KF
Sbjct: 191 QYILRQAFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKF 250
Query: 178 KTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMH 237
+TG + DQ+LL++LI F C++EG+FFY GF QIL++GR+NKM G SE +QYILRDESMH
Sbjct: 251 ETGTPETDQQLLRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVSEQFQYILRDESMH 310
Query: 238 CNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKS 297
NFGID+IN IK+ENP+LWT EF +E+ Q+ L+ LE YA DTMP+G+LG+N +
Sbjct: 311 VNFGIDMINQIKIENPHLWTAEFQQEVIQMILEGTLLEIEYARDTMPRGVLGMNAAMMEE 370
Query: 298 YLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
YL+FI N R+ Q+G+ + +P NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 371 YLKFICNRRLAQLGLPEQYPGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
lwoffii SH145]
gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
lwoffii SH145]
Length = 427
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 258/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D FKTG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LWT
Sbjct: 271 VLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPGLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
TEF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 331 TEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIANRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|407007446|gb|EKE23098.1| hypothetical protein ACD_6C00601G0001 [uncultured bacterium]
Length = 427
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 258/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D FKTG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LWT
Sbjct: 271 VLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPGLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
TEF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 331 TEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIANRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|389721365|ref|ZP_10188117.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. HA]
gi|388608661|gb|EIM37857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. HA]
Length = 427
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 258/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D FKTG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQQLSDPTFKTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LWT
Sbjct: 271 VLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPGLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
TEF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 331 TEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIANRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
litoralis KT71]
gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
litoralis KT71]
Length = 469
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 259/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K +IN D+NQLVPFKY+WAW +Y+ CANHWMPQE+NM D+ WKNP GLT
Sbjct: 133 RVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADVATWKNPEGLT 192
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V R+LG+FSTADSL ANN+VL YR IT PECRQYLLRQAFEEAIHTHAYQY +
Sbjct: 193 DDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEAIHTHAYQYCI 252
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + I L+D F+TG ++DQ LL++LI F +
Sbjct: 253 ESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLESDQTLLRNLIGFYAV 312
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LWT
Sbjct: 313 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPQLWTE 372
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+ + FP
Sbjct: 373 EFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRLSQIGLPEQFPG 432
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 433 VQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 469
>gi|407803489|ref|ZP_11150324.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax sp.
W11-5]
gi|407022581|gb|EKE34333.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax sp.
W11-5]
Length = 427
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 199/336 (59%), Positives = 263/336 (78%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN D+NQLVPFKY+WAW +YL C+NHWMPQE+NM D+ LWKNP GLT
Sbjct: 92 RVQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMSADVALWKNPEGLT 151
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKR+LGFFSTADSL ANN+VL YR IT PECRQY+LRQ+FEEAIHTHAYQY +
Sbjct: 152 DDERRIVKRSLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQSFEEAIHTHAYQYCI 211
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y E+ ++ K ++ I + ++D +FKTG + D+ LL++LI F C+
Sbjct: 212 ESLGMDEGEIFNMYRELPAVAKKAQWGIQYTREMSDPEFKTGTVETDKALLENLIAFYCV 271
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK+ENP+LW
Sbjct: 272 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGVDVINQIKIENPHLWDA 331
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ + Q+ L+ ELE YA DTMP+G+LG+N K + YL+FIAN R+ Q+G+ + F
Sbjct: 332 QMRDKATQMILEGTELEIQYARDTMPRGVLGMNAKMMEEYLQFIANRRLAQLGLPEQFKG 391
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPFPWMSE++ ++KE NFFETRV+EYQ+GG+L W
Sbjct: 392 VENPFPWMSEIMDLRKEKNFFETRVIEYQTGGSLSW 427
>gi|374705838|ref|ZP_09712708.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
S9]
Length = 417
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 260/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++ N D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GLT
Sbjct: 81 RVAVDKKRMTNCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADIALWKSTDGLT 140
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 141 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 200
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 201 ESLAMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 260
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 261 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 320
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P
Sbjct: 321 SMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPG 380
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 381 TTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 417
>gi|406035945|ref|ZP_11043309.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
parvus DSM 16617 = CIP 108168]
Length = 427
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + LTD F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLTDPNFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 NEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
junii SH205]
gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
junii SH205]
Length = 427
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|384082547|ref|ZP_09993722.1| ribonucleotide-diphosphate reductase subunit beta [gamma
proteobacterium HIMB30]
Length = 416
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/338 (60%), Positives = 261/338 (77%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ER+ K++IN D+NQLVPFKY WAW +YL CANHWMPQEINM +DI LW++ GL
Sbjct: 79 ERVQVDQKRMINCRADLNQLVPFKYEWAWTKYLDGCANHWMPQEINMTQDIALWRSNDGL 138
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+ +ER++V RNLGFFSTADSL ANN+VL YR +T PECRQYLLRQAFEEAIHTHAYQY
Sbjct: 139 SADERKIVMRNLGFFSTADSLVANNLVLSIYRLVTNPECRQYLLRQAFEEAIHTHAYQYC 198
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE EIFN Y EI ++ K + + + + + +F+TG T+NDQ+LL++LI F C
Sbjct: 199 IESLGMDEGEIFNMYREIPAVAKKAAWALKYTQAIGNPQFQTGTTENDQELLQNLIAFYC 258
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EGLFFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK ENP+LWT
Sbjct: 259 VLEGLFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHVNFGVDVINQIKNENPHLWT 318
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF ++ Q+ L+ + LE YA DTMP+G+LG+N + + YL+FI N R+ QIG+ + FP
Sbjct: 319 PEFQAKMTQMILEGLALEIEYARDTMPRGVLGMNAQMMEEYLKFITNRRLTQIGLSEQFP 378
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV EYQ GG L W+
Sbjct: 379 GVDNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWD 416
>gi|424056804|ref|ZP_17794321.1| hypothetical protein W9I_00130 [Acinetobacter nosocomialis Ab22222]
gi|407440337|gb|EKF46854.1| hypothetical protein W9I_00130 [Acinetobacter nosocomialis Ab22222]
Length = 427
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
Length = 427
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + LTD F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ ++ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|403673289|ref|ZP_10935590.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. NCTC 10304]
gi|417548253|ref|ZP_12199334.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-18]
gi|417560644|ref|ZP_12211523.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC137]
gi|417563665|ref|ZP_12214539.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC143]
gi|421200919|ref|ZP_15658078.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC109]
gi|421456390|ref|ZP_15905732.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-123]
gi|421632675|ref|ZP_16073322.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-13]
gi|421663742|ref|ZP_16103886.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC110]
gi|421696487|ref|ZP_16136073.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-692]
gi|421809590|ref|ZP_16245423.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC035]
gi|424061004|ref|ZP_17798495.1| hypothetical protein W9K_02118 [Acinetobacter baumannii Ab33333]
gi|445404953|ref|ZP_21431090.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-57]
gi|445449235|ref|ZP_21444230.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-A-92]
gi|445487569|ref|ZP_21457840.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii AA-014]
gi|395523226|gb|EJG11315.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC137]
gi|395555421|gb|EJG21422.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC143]
gi|395562951|gb|EJG24604.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC109]
gi|400210818|gb|EJO41782.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-123]
gi|400388552|gb|EJP51624.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-18]
gi|404561667|gb|EKA66893.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-692]
gi|404668956|gb|EKB36865.1| hypothetical protein W9K_02118 [Acinetobacter baumannii Ab33333]
gi|408708383|gb|EKL53657.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-13]
gi|408713081|gb|EKL58256.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC110]
gi|410413950|gb|EKP65757.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC035]
gi|444756978|gb|ELW81514.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-A-92]
gi|444768459|gb|ELW92674.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii AA-014]
gi|444782271|gb|ELX06180.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-57]
Length = 427
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AYE]
gi|213156529|ref|YP_002318190.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB0057]
gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
baumannii AB307-0294]
gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB900]
gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB056]
gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB058]
gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB059]
gi|417547086|ref|ZP_12198172.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC032]
gi|417573467|ref|ZP_12224321.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Canada BC-5]
gi|421621997|ref|ZP_16062908.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC074]
gi|421625105|ref|ZP_16065961.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC098]
gi|421642448|ref|ZP_16082964.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-235]
gi|421649088|ref|ZP_16089484.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-251]
gi|421650782|ref|ZP_16091155.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC0162]
gi|421655896|ref|ZP_16096210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-72]
gi|421659021|ref|ZP_16099247.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-83]
gi|421667616|ref|ZP_16107682.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC087]
gi|421670430|ref|ZP_16110428.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC099]
gi|421675199|ref|ZP_16115124.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC065]
gi|421677181|ref|ZP_16117074.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC111]
gi|421692905|ref|ZP_16132555.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-116]
gi|421699258|ref|ZP_16138793.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-58]
gi|421788180|ref|ZP_16224490.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-82]
gi|421795246|ref|ZP_16231330.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-21]
gi|421798968|ref|ZP_16234976.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Canada BC1]
gi|425747564|ref|ZP_18865567.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-348]
gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii AYE]
gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
baumannii ATCC 17978]
gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii AB0057]
gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
baumannii AB307-0294]
gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|400209035|gb|EJO40005.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Canada BC-5]
gi|400384974|gb|EJP43652.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC032]
gi|404559550|gb|EKA64807.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-116]
gi|404571885|gb|EKA76934.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-58]
gi|408506919|gb|EKK08623.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-72]
gi|408509547|gb|EKK11218.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC0162]
gi|408513175|gb|EKK14809.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-235]
gi|408514337|gb|EKK15944.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-251]
gi|408696760|gb|EKL42289.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC074]
gi|408699530|gb|EKL45006.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC098]
gi|408708960|gb|EKL54222.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-83]
gi|410382746|gb|EKP35285.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC065]
gi|410383796|gb|EKP36316.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC087]
gi|410385109|gb|EKP37604.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC099]
gi|410393459|gb|EKP45812.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC111]
gi|410402133|gb|EKP54262.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-21]
gi|410403751|gb|EKP55829.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-82]
gi|410411179|gb|EKP63059.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Canada BC1]
gi|425493482|gb|EKU59714.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-348]
gi|452948349|gb|EME53828.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii MSP4-16]
Length = 427
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
sp. RUH2624]
gi|425740296|ref|ZP_18858470.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-487]
gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
sp. RUH2624]
gi|425495063|gb|EKU61253.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-487]
Length = 427
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ACICU]
gi|387125063|ref|YP_006290945.1| ribonucleotide reductase subunit beta [Acinetobacter baumannii
MDR-TJ]
gi|407931628|ref|YP_006847271.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii TYTH-1]
gi|417570647|ref|ZP_12221504.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC189]
gi|417577417|ref|ZP_12228262.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-17]
gi|417870673|ref|ZP_12515628.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH1]
gi|417872419|ref|ZP_12517321.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH2]
gi|417876816|ref|ZP_12521566.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH3]
gi|417881619|ref|ZP_12525932.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH4]
gi|421204643|ref|ZP_15661761.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AC12]
gi|421534672|ref|ZP_15980943.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AC30]
gi|421686776|ref|ZP_16126520.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-143]
gi|421702435|ref|ZP_16141917.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ZWS1122]
gi|421706173|ref|ZP_16145591.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ZWS1219]
gi|421793037|ref|ZP_16229175.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-2]
gi|424053544|ref|ZP_17791076.1| hypothetical protein W9G_02233 [Acinetobacter baumannii Ab11111]
gi|424062799|ref|ZP_17800284.1| hypothetical protein W9M_00082 [Acinetobacter baumannii Ab44444]
gi|425752443|ref|ZP_18870350.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-113]
gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii
ACICU]
gi|342227415|gb|EGT92349.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH1]
gi|342233589|gb|EGT98305.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH2]
gi|342236991|gb|EGU01486.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH3]
gi|342238678|gb|EGU03106.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH4]
gi|385879555|gb|AFI96650.1| ribonucleotide reductase, beta subunit [Acinetobacter baumannii
MDR-TJ]
gi|395551095|gb|EJG17104.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC189]
gi|395570638|gb|EJG31300.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-17]
gi|398325796|gb|EJN41956.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AC12]
gi|404567239|gb|EKA72365.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-143]
gi|404667682|gb|EKB35595.1| hypothetical protein W9G_02233 [Acinetobacter baumannii Ab11111]
gi|404675169|gb|EKB42885.1| hypothetical protein W9M_00082 [Acinetobacter baumannii Ab44444]
gi|407194177|gb|EKE65321.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ZWS1122]
gi|407194605|gb|EKE65744.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ZWS1219]
gi|407900209|gb|AFU37040.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii TYTH-1]
gi|409987338|gb|EKO43520.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AC30]
gi|410398297|gb|EKP50519.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-2]
gi|425498674|gb|EKU64740.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-113]
Length = 427
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii SDF]
gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii]
Length = 427
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR51-B]
gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR51-B]
Length = 421
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 199/338 (58%), Positives = 261/338 (77%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R++ K +IN D+NQLVPFKY+WAW +Y+ CANHWMPQE+NM D+ WK+ GL
Sbjct: 84 QRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADVATWKSSDGL 143
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+V R+LG+FSTADSL ANN+VLG YR IT PECRQYLLRQAFEEAIHTHAYQY
Sbjct: 144 TEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEAIHTHAYQYC 203
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE +FN Y E+ S+ K + + L+D FKTG + DQ+LL++L+ F C
Sbjct: 204 IESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVETDQQLLRNLVGFYC 263
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+ EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 264 VTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWT 323
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ +LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + +P
Sbjct: 324 AEFQEEVVQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLNQLGLSEQYP 383
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 384 GVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 421
>gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
salexigens DSM 3043]
gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
DSM 3043]
Length = 420
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +KQ+IN D+NQLVPFKY WAW +YL ANHWMPQE+NM DI LWK+ GLT
Sbjct: 84 RIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNADIALWKSNDGLT 143
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V+R+LG+FSTADSL ANN+VL YR IT PECRQYLLRQAFEEAIHTHAYQY V
Sbjct: 144 EDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEEAIHTHAYQYCV 203
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + L F TG + DQ+LL++LI F C+
Sbjct: 204 ESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPETDQELLRNLIAFYCV 263
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK+ENP+LWT
Sbjct: 264 TEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMINQIKIENPHLWTP 323
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ Q+ ++ ELE YA D+MP+G+LG+N + YL FI N R+ QIG+K+ +P
Sbjct: 324 EFQDEVTQMIIEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRRLAQIGLKEQYPG 383
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE+I ++KE NFFETRV EYQ GG L W+
Sbjct: 384 AENPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 420
>gi|332852155|ref|ZP_08433982.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013150]
gi|332867554|ref|ZP_08437707.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013113]
gi|332729527|gb|EGJ60866.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013150]
gi|332733971|gb|EGJ65116.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013113]
Length = 440
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 104 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 163
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 164 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 223
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 224 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 283
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 284 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 343
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 344 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 403
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 404 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440
>gi|332872596|ref|ZP_08440564.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6014059]
gi|384141988|ref|YP_005524698.1| ribonucleotide reductase subunit beta [Acinetobacter baumannii
MDR-ZJ06]
gi|332739125|gb|EGJ69984.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6014059]
gi|347592481|gb|AEP05202.1| ribonucleotide reductase, beta subunit [Acinetobacter baumannii
MDR-ZJ06]
Length = 440
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 104 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 163
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 164 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 223
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 224 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 283
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 284 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 343
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 344 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 403
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 404 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440
>gi|399908674|ref|ZP_10777226.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas sp.
KM-1]
Length = 413
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +KQ+IN D+NQLVPFKY WAW +YL ANHWMPQE+NM DI LWK+ GLT
Sbjct: 77 RIQVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNADIALWKSQDGLT 136
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ERR+V+R+LG+FSTADSL ANN+VL YR IT PECRQYLLRQAFEEAIHTHAYQY V
Sbjct: 137 PDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEEAIHTHAYQYCV 196
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + L F TG + DQ+LL++L+ F C+
Sbjct: 197 ESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARSDFNTGTPETDQELLRNLVAFYCV 256
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK+ENP+LWT
Sbjct: 257 TEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMINQIKIENPHLWTP 316
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ Q+ L+ ELE YA DTMP+G+LG+N + YL FI N R+ QIG+K+ +P
Sbjct: 317 EFQDEVTQMILEGTELEIAYARDTMPRGVLGMNAAIMEEYLHFICNRRLAQIGLKEQYPG 376
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE+I ++KE NFFETRV EYQ GG L W+
Sbjct: 377 AQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 413
>gi|402757453|ref|ZP_10859709.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. NCTC 7422]
Length = 427
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER ++ R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQEEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. ADP1]
gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
sp. ADP1]
Length = 427
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/336 (61%), Positives = 258/336 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GLT
Sbjct: 92 RVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGLT 151
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 152 EDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEAIHTHAYQYCI 211
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN YHEI S+ K + + + L+D KF+TG + DQ+LL++LI F C+
Sbjct: 212 ESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPETDQQLLRNLIAFYCV 271
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G SE +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 272 LEGIFFYCGFTQILSMGRRNKMNGVSEQFQYILRDESMHVNFGIDMINQIKIENPHLWTA 331
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ Q+ ++ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + +
Sbjct: 332 EFQQEVIQMIVEGTLLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLAQLGLPEQYRG 391
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 392 VNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|425745351|ref|ZP_18863396.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-323]
gi|425488778|gb|EKU55106.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-323]
Length = 427
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER ++ R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQEEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFGWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|381198324|ref|ZP_09905663.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
lwoffii WJ10621]
Length = 427
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D F+TG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPSLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQEEIVQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVSNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
calcoaceticus RUH2202]
gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
calcoaceticus RUH2202]
Length = 427
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + LTD F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW+
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWS 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ ++ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|424745874|ref|ZP_18174133.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-141]
gi|422941693|gb|EKU36758.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-141]
Length = 427
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + LTD F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW+
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWS 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ ++ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SK82]
gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SH164]
gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SK82]
gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SH164]
Length = 427
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D FKTG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLNQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|358012117|ref|ZP_09143927.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. P8-3-8]
Length = 427
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 256/337 (75%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L D FKTG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLCDPTFKTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPSLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|375133629|ref|YP_004994279.1| ribonucleoside-diphosphate reductase subunit beta [Acinetobacter
calcoaceticus PHEA-2]
gi|427425481|ref|ZP_18915569.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-136]
gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
calcoaceticus PHEA-2]
gi|425697683|gb|EKU67351.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-136]
Length = 370
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 34 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 93
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 94 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 153
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + LTD F TG +NDQ+LL++LI F C
Sbjct: 154 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRLLRNLIAFYC 213
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 214 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 273
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ ++ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 274 AEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 333
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 334 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370
>gi|421465831|ref|ZP_15914518.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens WC-A-157]
gi|421856756|ref|ZP_16289116.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|400204098|gb|EJO35083.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens WC-A-157]
gi|403187824|dbj|GAB75317.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 427
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D FKTG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLNQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|417553980|ref|ZP_12205049.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-81]
gi|421628008|ref|ZP_16068794.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC180]
gi|421803399|ref|ZP_16239317.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-A-694]
gi|400390397|gb|EJP57444.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-81]
gi|408708529|gb|EKL53802.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC180]
gi|410412990|gb|EKP64834.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii WC-A-694]
Length = 370
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 34 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 93
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 94 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 153
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 154 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 213
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 214 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 273
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 274 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 333
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 334 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370
>gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR5-3]
gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR5-3]
Length = 441
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 259/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K +IN D+NQLVPFKY+WAW +Y+ CANHWMPQE+NM D+ WKNP GLT
Sbjct: 105 RVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADVATWKNPEGLT 164
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++ R+LG+FSTADSL ANN+VL YR IT PECRQYLLRQAFEEAIHTHAYQY +
Sbjct: 165 DDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEAIHTHAYQYCI 224
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + L+D F TG ++DQ LL++LI F +
Sbjct: 225 ESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTMESDQTLLRNLIGFYAV 284
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 285 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWTE 344
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E Q+ L+ +LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+ + FP
Sbjct: 345 EFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRLSQIGLPEQFPG 404
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 405 VQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 441
>gi|388257590|ref|ZP_10134769.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio sp.
BR]
gi|387938757|gb|EIK45309.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio sp.
BR]
Length = 436
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 200/337 (59%), Positives = 258/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI K++IN D+NQLVPFKY+WAW +YL C+NHWMPQE+NM DI WK+ GLT
Sbjct: 100 RIQVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTADIATWKSKDGLT 159
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V R+LG+FSTADSL ANN+VL YR IT PECRQY+LRQ+FEEAIHTHAYQY +
Sbjct: 160 DDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEAIHTHAYQYCI 219
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y E+ S+ +K + + L D F TG + DQ+LL++L+ F +
Sbjct: 220 ESLGMDEGEIFNMYRELPSVANKAAWSLKHTQTLGDPTFTTGTPETDQELLRNLVAFYVV 279
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 280 TEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWTA 339
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ Q+ L+ ELE YA D+MP+G+LG+N + YL FIAN R Q+G+K+ FP
Sbjct: 340 EFQQEVIQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIANRRCAQVGLKEQFPG 399
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 400 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 436
>gi|407697100|ref|YP_006821888.1| ribonucleoside reductase subunit beta [Alcanivorax dieselolei B5]
gi|407254438|gb|AFT71545.1| Ribonucleoside reductase, beta subunit [Alcanivorax dieselolei B5]
Length = 437
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 256/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN D+NQLVPFKY+WAW +YL CANHWMPQEINM D+ LWK GLT
Sbjct: 101 RVQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNADLALWKRTDGLT 160
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQ+FEEAIHTHAYQY +
Sbjct: 161 EDERRIVKRNLGFFSTADSLVANNLVLALYRLITNPECRQYILRQSFEEAIHTHAYQYCI 220
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y EI S+ K ++ I + L+D KF TG + D+ LL++LI F C+
Sbjct: 221 ESLGMDEGEIFNMYREIPSVAKKAQWGIEYTRELSDPKFTTGTEETDKALLQNLIAFYCV 280
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK+ENP+LW
Sbjct: 281 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGVDVINQIKLENPHLWDQ 340
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ Q+ L+ ELE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 341 AMRDQATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLTQLGLPEQFKG 400
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV EYQ GG L W+
Sbjct: 401 VSNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWD 437
>gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ATCC 17978]
gi|384130701|ref|YP_005513313.1| nrdB [Acinetobacter baumannii 1656-2]
gi|385236291|ref|YP_005797630.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii TCDC-AB0715]
gi|416145352|ref|ZP_11600391.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB210]
gi|445432716|ref|ZP_21439389.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC021]
gi|445457595|ref|ZP_21446583.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC047]
gi|445468682|ref|ZP_21450895.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC338]
gi|445480490|ref|ZP_21455565.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-78]
gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2]
gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii TCDC-AB0715]
gi|333366898|gb|EGK48912.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB210]
gi|444758054|gb|ELW82556.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC021]
gi|444771506|gb|ELW95635.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-78]
gi|444774917|gb|ELW98988.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC338]
gi|444776212|gb|ELX00258.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC047]
Length = 361
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 25 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 84
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 85 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 144
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y EI S+ K + + + L+D F TG +NDQ+LL++LI F C
Sbjct: 145 IESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYC 204
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 205 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 264
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 265 AEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 324
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 325 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 361
>gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
johnsonii SH046]
gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
johnsonii SH046]
Length = 427
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D F+TG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPSLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|410447376|ref|ZP_11301472.1| ribonucleoside-diphosphate reductase, beta subunit [SAR86 cluster
bacterium SAR86E]
gi|409979651|gb|EKO36409.1| ribonucleoside-diphosphate reductase, beta subunit [SAR86 cluster
bacterium SAR86E]
Length = 415
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 260/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K +IN D+NQLVPFKY+WAW +YL ANHWMPQE+NM DI LWK+ GLT
Sbjct: 79 RVQVDDKAMINCKADLNQLVPFKYDWAWQKYLDGSANHWMPQEVNMTADIALWKSDDGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFFSTADSL ANN+VL YR +T PECRQY+LRQ+ EEAIHTHAYQY +
Sbjct: 139 EDERTIVKRNLGFFSTADSLVANNLVLALYRLVTNPECRQYILRQSLEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y EI S+ K + + + ++D F+TG T+ D++LL++LI F C+
Sbjct: 199 ESLGMDEGEIFNMYREIPSVAKKAAWGLKYTQQISDPTFQTGTTETDKQLLRNLIAFYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHVNFGIDVINQIKIENPHLWDE 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
E E Q+ L+ ELE YA DTMP+G+LG+N + YL+FIAN R+ QIG+++ F
Sbjct: 319 EMKNEAAQMILEGTELEIQYARDTMPRGVLGMNASMMEEYLQFIANRRLTQIGLEEEFKG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV+EYQ+GG L+WE
Sbjct: 379 ATNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 415
>gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
elongata DSM 2581]
gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
elongata DSM 2581]
Length = 415
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 253/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +KQ+IN D+NQLVPFKY WAW +YL ANHWMPQE+NM DI LWK+ GLT
Sbjct: 79 RIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNADIALWKSADGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V+R+LG+FSTADSL ANN+VL YR IT PECRQYLLRQAFEEAIHTHAYQY V
Sbjct: 139 DDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEEAIHTHAYQYCV 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE E+FN Y EI S+ K + + L F TG + DQ+LL++L+ F C+
Sbjct: 199 ESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPETDQELLRNLVAFYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK+ENP+LWT
Sbjct: 259 TEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMINQIKIENPHLWTP 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E Q+ L+ ELE YA D+MP+G+LG+N + YL FI N R+ QIG+K+ FP
Sbjct: 319 EFQDECTQMILEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRRLAQIGLKEQFPG 378
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE+I ++KE NFFETRV EYQ GG L W+
Sbjct: 379 AQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 415
>gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio
japonicus Ueda107]
gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus
Ueda107]
Length = 429
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 260/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK+ GLT
Sbjct: 93 RIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSKDGLT 152
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+V R+LG+FSTADSL ANN+VL YR IT PECRQY+LRQ+FEEAIHTHAYQY +
Sbjct: 153 EDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEAIHTHAYQYCI 212
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ +K + + L + F TG + DQ+LL++L+ F +
Sbjct: 213 ESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPETDQELLRNLVAFYVV 272
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 273 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWTA 332
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ Q+ L+ ELE YA D+MP+G+LG+N + YL FIAN R Q+G+K+ FP
Sbjct: 333 EFQQEVLQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIANRRCAQLGLKEQFPG 392
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 393 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 429
>gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
oleivorans DR1]
gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
oleivorans DR1]
Length = 427
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 257/337 (76%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + LTD F TG +NDQ+LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRLLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW+
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWS 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E+ Q+ ++ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter
turnerae T7901]
gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae
T7901]
Length = 453
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 200/336 (59%), Positives = 259/336 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K++IN D+NQLVPFKY WAW +YL CANHWMPQE+NM D+ +WK+ GL+
Sbjct: 118 RIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMTADVAIWKSEEGLS 177
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER++V R+LG+FSTADSL ANN+VL YRHIT PE RQYLLRQAFEEAIHTHAYQY +
Sbjct: 178 ADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEAIHTHAYQYCI 237
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + I ++D +F TG + DQ+LL++LI F I
Sbjct: 238 ESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPEADQELLRNLIGFYVI 297
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 298 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWTE 357
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E++Q+ L+ ELE YA DTMP+G+LG+N + YL FIAN R+ Q+G+K+ +P
Sbjct: 358 SFQQEVKQMVLEGTELEIGYARDTMPRGVLGMNAAIMEEYLHFIANRRLAQLGLKEAYPG 417
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W
Sbjct: 418 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSW 453
>gi|385674980|ref|ZP_10048908.1| ribonucleotide-diphosphate reductase subunit beta [Amycolatopsis
sp. ATCC 39116]
Length = 356
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 200/338 (59%), Positives = 256/338 (75%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R++ +K +IN DVNQL+P KY+WAW++YL+ C+NHWMP E+ MQ DI LWK+P GL
Sbjct: 19 DRVSVDDKAMINARADVNQLLPLKYHWAWEKYLAGCSNHWMPTEVAMQADIALWKSPDGL 78
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ERR+VKRNLGFF+TA+SL ANN+VL YR IT PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 79 TEDERRMVKRNLGFFATAESLVANNLVLAVYRQITNPECRQYLLRQAFEEAVHTHTFQYI 138
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
ESLGLDE E+FNAY E+ SI DKD + + + L + F TG DQ L+ L+ F
Sbjct: 139 CESLGLDEGELFNAYREVPSITDKDAWALKYTRNLENPDFATGTAAADQDFLRDLVAFYV 198
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+ EG++FY GF QIL+LGR+NKM+G +E +QYILRDES+H NFGID IN IK+ENP LW+
Sbjct: 199 VFEGMWFYTGFAQILSLGRRNKMVGIAEQFQYILRDESIHLNFGIDCINQIKIENPQLWS 258
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF E+ Q+ +A ELE YA DTMP+G+LGL+ + YLRFI + R +Q+G+ IF
Sbjct: 259 PEFQAEVRQMLTEACELEVAYARDTMPRGMLGLSAALCEQYLRFITDRRAQQLGLAPIFG 318
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + ++KE NFFETRV EYQ+GG+L W+
Sbjct: 319 ENENPFPWMSEAMDLRKEKNFFETRVTEYQTGGSLAWD 356
>gi|374620692|ref|ZP_09693226.1| ribonucleotide reductase, beta subunit [gamma proteobacterium
HIMB55]
gi|374303919|gb|EHQ58103.1| ribonucleotide reductase, beta subunit [gamma proteobacterium
HIMB55]
Length = 412
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 259/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQEINM D+ WK+ GLT
Sbjct: 76 RISVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMTADVATWKSEDGLT 135
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V R+LG+FSTADSL ANN+VLG YR IT PECRQYLLRQAFEEAIHTHAYQY +
Sbjct: 136 DDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEAIHTHAYQYCI 195
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + L+D F TG ++DQ++L++LI F +
Sbjct: 196 ESLGMDEGEVFNMYREVPSVAKKASWSLNKTQALSDPNFTTGTVEDDQQVLRNLIGFYGV 255
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 256 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWTE 315
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E Q+ L+ LE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + FP
Sbjct: 316 EFQQEAIQMILEGTALEIEYARDTMPRGVLGMNASMMEEYLQFIANRRLTQLGLPEQFPG 375
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 376 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 412
>gi|348171941|ref|ZP_08878835.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharopolyspora spinosa NRRL 18395]
Length = 358
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 253/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K +IN DVNQL+P KY WAW++YL+ C NHWMP EI+MQ DI +WK+ GL+
Sbjct: 22 RVDVGDKAMINARADVNQLLPLKYGWAWEKYLAGCNNHWMPTEISMQADIAMWKSTDGLS 81
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER L+KRNLGFF+TA+SL ANNIVL YRHIT PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 82 DDERLLLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFEEAVHTHTFQYIC 141
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y EI SI DKD + + + L D F TG+T+ DQ L+ L+ F I
Sbjct: 142 ESLGLDEGELFNMYREIPSIADKDAWALQYTRSLEDPDFTTGSTEADQAFLRDLVAFYVI 201
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QILALGR+NKM+G +E YQYILRDES+H NFGID IN IK+ENP+LWT
Sbjct: 202 FEGMWFYTGFAQILALGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKLENPHLWTE 261
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI Q+ A ELE Y DTMP+GILG+N Y+ FI N R Q+G++ +F
Sbjct: 262 EFQAEIRQMLTDACELEIAYGRDTMPRGILGINADLCAQYMHFITNRRCAQLGLEPVFQE 321
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQSGG+L W+
Sbjct: 322 ADNPFPWMSEAMDLKKEKNFFETRVIEYQSGGSLQWD 358
>gi|256822964|ref|YP_003146927.1| ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
16069]
gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
16069]
Length = 421
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K++IN D+NQLVPFKY+WAW +YL C+NHWMPQEINM +D+ WK+P GLT
Sbjct: 85 RIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEINMTKDVATWKDPNGLT 144
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER++V R+LG+FSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY V
Sbjct: 145 DDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEAIHTHAYQYCV 204
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ SI K + I +++ FKTG + DQ+LL++LI F C+
Sbjct: 205 ESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDEADQELLRNLIGFYCV 264
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK+ENP+LWT
Sbjct: 265 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDIINQIKLENPHLWTA 324
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ Q+ L+ +LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 325 EFKQEVLQMILEGTQLEIEYARDTMPRGVLGMNAGMMEEYLQFICNRRLAQLGLPEQFKN 384
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 385 VSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 421
>gi|403049951|ref|ZP_10904435.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
bereziniae LMG 1003]
gi|445419838|ref|ZP_21435402.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
sp. WC-743]
gi|444759291|gb|ELW83763.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
sp. WC-743]
Length = 427
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 256/337 (75%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER +V R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D F TG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +EI Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 AEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2143]
gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2143]
Length = 422
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 199/337 (59%), Positives = 261/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM D+ LWK+P GL+
Sbjct: 86 RLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADVALWKDPNGLS 145
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V R+LG+FSTADSL ANN++L YRHIT PECRQYLLRQAFEEAIHTHAYQY V
Sbjct: 146 DDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQAFEEAIHTHAYQYCV 205
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE E+FN Y E+ SI K + + L+D FKTG + DQ+LL++LI F +
Sbjct: 206 ESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPETDQELLRNLIGFYAV 265
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LW+
Sbjct: 266 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPQLWSE 325
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F +EI Q+ L+ +LE YA D+MP+G+LG+N + YL+FI+N R+ Q+G+ + +
Sbjct: 326 KFQQEIIQMILEGTQLEIEYARDSMPRGVLGMNAAMMEEYLQFISNRRLNQLGLPEQYQG 385
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L+WE
Sbjct: 386 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 422
>gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC3088]
gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC3088]
Length = 432
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 260/337 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K +IN D+NQLVPFKY+WAW +Y+ CANHWMPQEINM D+ WK+ L+
Sbjct: 96 RVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEINMTADVATWKSADVLS 155
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V R+LG+FSTADSL ANN+VLG YR IT PECRQYLLRQAFEEAIHTHAYQY +
Sbjct: 156 DDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEAIHTHAYQYCI 215
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y EI S+ K + + L+D FKTG T+NDQ LL++LI F +
Sbjct: 216 ESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTENDQTLLRNLIGFYAV 275
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 276 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPHLWTE 335
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F KE+ Q+ L+ ++E YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + FP
Sbjct: 336 DFQKEVIQMLLEGTQIEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLAQLGLPEQFPG 395
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 396 VQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 432
>gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2080]
gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2080]
Length = 419
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 199/337 (59%), Positives = 259/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K +IN D+NQLVPFKY+WAW +Y+ CANHWMPQE+NM D+ WK+P GL+
Sbjct: 83 RVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADVATWKDPDGLS 142
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++ R+LG+FSTADSL ANN+VL YR IT PECRQYLLRQAFEEAIHTHAYQY +
Sbjct: 143 DDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQAFEEAIHTHAYQYCI 202
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + L+D F+TG + DQ+LL++LI F C+
Sbjct: 203 ESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLETDQELLRNLIGFYCV 262
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP LWT
Sbjct: 263 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPLLWTP 322
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E Q+ L+ ELE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + FP
Sbjct: 323 EFQQEAIQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFICNRRLNQVGLPEQFPG 382
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 383 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 419
>gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax
borkumensis SK2]
gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis
SK2]
Length = 430
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 257/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM D+ LWK GLT
Sbjct: 94 RVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADLALWKKADGLT 153
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFF+TADSL ANN+VL YR IT PECRQY+LRQ+FEEAIHTHAYQY +
Sbjct: 154 DDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQSFEEAIHTHAYQYCI 213
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y EI S+ K ++ I + L+D +F TG + D+ LL++LI F C+
Sbjct: 214 ESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPETDKALLENLIAFYCV 273
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 274 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQIKLENPHLWDA 333
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ + Q+ L+ ELE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 334 QMRDKATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLAQLGLPEQFKG 393
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV EYQ GG L WE
Sbjct: 394 VNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 430
>gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharopolyspora erythraea NRRL 2338]
gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharopolyspora erythraea NRRL 2338]
gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit
[Saccharopolyspora erythraea NRRL 2338]
Length = 360
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K +IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+ GLT
Sbjct: 24 RVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQADIALWKSRDGLT 83
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLGFF+TA+SL ANNIVL YRHIT PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 84 DDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFEEAVHTHTFQYIC 143
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y EI SI DKD + + + L + F+ G + DQ L+ L+ F I
Sbjct: 144 ESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQAFLRDLVAFYVI 203
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID IN IK+ENP+LWT
Sbjct: 204 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKIENPHLWTP 263
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + +A ELE Y DTMP+GILGLN + Y+RFI N R Q+G++ +FP
Sbjct: 264 EFQEEVRTMLTEACELEVAYGRDTMPRGILGLNAGLCEEYMRFITNRRCAQLGLEPVFPE 323
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQSGG LDW+
Sbjct: 324 TANPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 360
>gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
DG881]
gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
DG881]
Length = 355
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 257/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM D+ LWK GLT
Sbjct: 19 RVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADLALWKKADGLT 78
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQ+FEEAIHTHAYQY +
Sbjct: 79 DDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEAIHTHAYQYCI 138
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y EI S+ K ++ I + L+D +F TG + D+ LL++LI F C+
Sbjct: 139 ESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVETDKALLENLIAFYCV 198
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 199 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQIKLENPHLWDA 258
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ + Q+ L+ ELE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 259 QMRDKATQMILEGAELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLAQLGLPEQFKG 318
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV EYQ GG L WE
Sbjct: 319 VNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 355
>gi|408374789|ref|ZP_11172471.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax
hongdengensis A-11-3]
gi|407765317|gb|EKF73772.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax
hongdengensis A-11-3]
Length = 366
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 257/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM D+ LWK GLT
Sbjct: 30 RVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADLALWKKADGLT 89
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQ+FEEAIHTHAYQY +
Sbjct: 90 DDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEAIHTHAYQYCI 149
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y EI S+ K ++ I + L+D +F TG + D+ LL++LI F C+
Sbjct: 150 ESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRELSDPEFTTGTVETDKALLENLIAFYCV 209
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFG+D+IN IK+ENP+LW
Sbjct: 210 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGVDVINQIKLENPHLWDQ 269
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ + Q+ L+ ELE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 270 QMRDKATQMILEGTELEIQYARDTMPRGVLGMNAPMMEEYLQFIANRRLAQLGLPEQFKG 329
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV EYQ GG L WE
Sbjct: 330 VNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 366
>gi|359428886|ref|ZP_09219914.1| ribonucleoside-diphosphate reductase subunit beta [Acinetobacter
sp. NBRC 100985]
gi|358235467|dbj|GAB01453.1| ribonucleoside-diphosphate reductase subunit beta [Acinetobacter
sp. NBRC 100985]
Length = 427
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 200/337 (59%), Positives = 255/337 (75%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER ++ R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D F TG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
F +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 ATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLSQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Chelativorans
sp. BNC1]
gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1]
Length = 369
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K++IN DVNQL+P KY WAW++YLS C NHWMP E++MQ DI LWK+ GLT
Sbjct: 33 RVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQADIALWKSRDGLT 92
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR+VKRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 93 EDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 152
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + + L D F+TG + DQ L+ L+ F I
Sbjct: 153 ESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEADQAFLRDLVAFYVI 212
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK ENP+LWT
Sbjct: 213 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKHENPHLWTP 272
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ ++ A ELE Y DTMP+G LGLN + Y+ FIAN R Q+G+ +FP
Sbjct: 273 EFQEELRRMLKDAAELEAAYGRDTMPRGFLGLNAGQCEQYMHFIANRRCAQLGLPPVFPE 332
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 333 TENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 369
>gi|335424307|ref|ZP_08553318.1| ribonucleotide-diphosphate reductase subunit beta [Salinisphaera
shabanensis E1L3A]
gi|334889958|gb|EGM28242.1| ribonucleotide-diphosphate reductase subunit beta [Salinisphaera
shabanensis E1L3A]
Length = 399
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 200/337 (59%), Positives = 257/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K+IIN DVNQLVPFKY WAW++YL++CANHWMPQE++M DI +W++P LT
Sbjct: 63 RVSVDEKRIINCRADVNQLVPFKYTWAWEKYLNACANHWMPQEVSMSADIAMWQDPDALT 122
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KR GFF++++SL ANNIVLG Y+H+T PECRQYLLRQAFEEA+H H +QYIV
Sbjct: 123 EDERLILKRGFGFFASSESLVANNIVLGVYKHLTNPECRQYLLRQAFEEAVHGHTFQYIV 182
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL LDE EIFN Y E+ S+ +K + + + L D F+TG +NDQ L+ LI F I
Sbjct: 183 ESLNLDEGEIFNMYRELPSVHNKAAWAMQYTQSLNDPNFQTGTHENDQIFLRDLIAFYVI 242
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GFVQ L+ GR+NKM G++E QYI+RDESMH NFGID+IN IK+ENPNLWT
Sbjct: 243 FEGIWFYAGFVQYLSFGRRNKMTGTAEQMQYIMRDESMHLNFGIDVINQIKIENPNLWTQ 302
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E ++ +A+ LE YA DTMP+G+LGLN F Y++FIAN R QIG+ +++P
Sbjct: 303 EFQDEARRMIDEAMHLEIEYAHDTMPRGVLGLNASMFDEYMKFIANRRCSQIGLAELYPG 362
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQSGG L W+
Sbjct: 363 AENPFPWMSEMMDLKKEKNFFETRVIEYQSGGALSWD 399
>gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
27244]
gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
haemolyticus ATCC 19194]
gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
27244]
gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
haemolyticus ATCC 19194]
Length = 427
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 200/337 (59%), Positives = 255/337 (75%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+ +K +IN D+NQLVPFKY WAW +YL CANHWMPQE+NM DI LWK+ GL
Sbjct: 91 QRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSENGL 150
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER ++ R+LGFFSTADSL ANN+VL YRHIT PECRQY+LRQAFEEAIHTHAYQY
Sbjct: 151 TEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYC 210
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ESLG+DE E+FN Y E+ S+ K + + + L+D F TG +NDQ LL++LI F C
Sbjct: 211 IESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQILLRNLIAFYC 270
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LWT
Sbjct: 271 VLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWT 330
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
F +E+ Q+ L+ LE YA DTMP+G+LG+N + YL+FI N R+ Q+G+ + F
Sbjct: 331 ATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLAQLGLPEQFA 390
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPF WMSEM+ ++KE NFFETRV +YQ+GG L W
Sbjct: 391 GVTNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|452956700|gb|EME62086.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
decaplanina DSM 44594]
Length = 358
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RIN +K++IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+P GLT
Sbjct: 22 RINVDDKRMINARADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVAMQADIALWKSPDGLT 81
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFF+TA+SL ANNIVL YR IT PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 82 EDERTMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEEAVHTHTFQYIC 141
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGL E E+FN Y E+ SI DKD + + + L + F+TG + DQ L+ L+ F I
Sbjct: 142 ESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEADQNFLRDLVAFYVI 201
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKMIG +E YQYILRDES+H NFGID IN IK+ENP+LWT
Sbjct: 202 FEGMWFYTGFAQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDCINQIKIENPHLWTE 261
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI + +A ELE YA DTMP+G+LGL+ + + Y+ FI + R +QIG+ IF
Sbjct: 262 EFQAEIRTMLTEACELEVAYARDTMPRGMLGLSAELIEQYMHFITDRRAQQIGLAPIFGE 321
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQSGG LDW+
Sbjct: 322 TENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 358
>gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp.
P1]
Length = 358
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 198/355 (55%), Positives = 264/355 (74%), Gaps = 4/355 (1%)
Query: 5 LNNKKKTLKINSFER----INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQ 60
+ N T + +R I+ +K++IN DVNQL+P KY+WAWD+YL+ C+NHWMP
Sbjct: 4 VENDPDTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPT 63
Query: 61 EINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYL 120
E+ MQ DI LW++ GLT++ER ++ RNLGFF+TA+SL ANN+VL YRH+T PECRQYL
Sbjct: 64 EVAMQADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYL 123
Query: 121 LRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTG 180
LRQ+FEEA+HTH +QY+ ESLGLDE E+FNAY ++ SI DKD + + + L+D F TG
Sbjct: 124 LRQSFEEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTG 183
Query: 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNF 240
+ND+ L+ L+ F + EG++FY GF QILALGR+NKM+G +E YQYILRDES+H NF
Sbjct: 184 TPENDRAFLRDLVAFYVVFEGMWFYTGFAQILALGRRNKMVGVAEQYQYILRDESIHLNF 243
Query: 241 GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLR 300
GID IN IK+ENP+LWT EF EI + +A ELE YA DTMP+G+LGL ++ + YLR
Sbjct: 244 GIDCINQIKIENPHLWTEEFAAEIRAMLHEACELEVAYARDTMPRGMLGLTAESCEQYLR 303
Query: 301 FIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
FI + R +QIG+ +F NPFPWMSE + ++KE NFFETRV EY++GG+L+W+
Sbjct: 304 FITDRRAEQIGLAPLFGQADNPFPWMSEAMDLRKEKNFFETRVTEYRTGGSLEWD 358
>gi|424864077|ref|ZP_18287984.1| ribonucleoside-diphosphate reductase, beta subunit [SAR86 cluster
bacterium SAR86B]
gi|400759937|gb|EJP74115.1| ribonucleoside-diphosphate reductase, beta subunit [SAR86 cluster
bacterium SAR86B]
Length = 413
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/336 (60%), Positives = 256/336 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL ANHWMPQEINM DI LWK+ GLT
Sbjct: 78 RVQVDQKAMINCKADLNQLVPFKYDWAWQKYLDGSANHWMPQEINMTSDIALWKSEDGLT 137
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKR+LGFFSTADSL ANN+VL YR IT PECRQYLLRQ+ EEAIHTHAYQY +
Sbjct: 138 EDERTIVKRSLGFFSTADSLVANNLVLAVYRLITNPECRQYLLRQSLEEAIHTHAYQYCI 197
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y EI + K + + + ++D F+TG + D++LLK+LI F C+
Sbjct: 198 ESLGMDEGEIFNMYREIPCVAKKASWGLKYTKEISDPTFETGTEETDKQLLKNLIAFYCV 257
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G+SE +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 258 LEGIFFYCGFTQILSMGRRNKMTGTSEQFQYILRDESMHVNFGIDVINQIKIENPHLWDD 317
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ E Q+ L+ ELE YA DTMP+G+LG+N + YL+FIAN R+ QIG+++ F
Sbjct: 318 KMQAEAAQMILEGTELEIQYARDTMPRGVLGMNASMMEEYLKFIANRRLTQIGLEEEFQG 377
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPFPWMSE++ ++KE NFFETRV+EYQ+GG L+W
Sbjct: 378 VTNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNW 413
>gi|451333816|ref|ZP_21904399.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Amycolatopsis azurea DSM 43854]
gi|449423585|gb|EMD28907.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Amycolatopsis azurea DSM 43854]
Length = 358
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/337 (60%), Positives = 255/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RIN +K++IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+P GLT
Sbjct: 22 RINVDDKRMINARADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVAMQADIALWKSPDGLT 81
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFF+TA+SL ANNIVL YR IT PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 82 EDERTMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEEAVHTHTFQYIC 141
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGL E E+FN Y E+ SI +KD + + + L + F+TG + DQ L+ L+ F I
Sbjct: 142 ESLGLVEGELFNMYREVPSISEKDAWALKYTQNLENPDFETGTPEADQNFLRDLVAFYVI 201
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKMIG +E YQYILRDES+H NFGID IN IK+ENP+LWT
Sbjct: 202 FEGMWFYTGFAQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDCINQIKIENPHLWTE 261
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF EI + +A ELE YA DTMP+G+LGL+ + + Y+ FI + R +QIG++ IF
Sbjct: 262 EFQAEIRGMLTEACELEVAYARDTMPRGMLGLSAELIEQYMHFITDRRAQQIGLQPIFGE 321
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQSGG LDW+
Sbjct: 322 TENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 358
>gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. AA4]
gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. AA4]
Length = 357
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/337 (60%), Positives = 255/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RIN +K++IN DVNQL+P KY WAWD+YL++C NHWMP E+ MQ DI LWK+P GLT
Sbjct: 21 RINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAMQADIALWKSPDGLT 80
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER+++KRNLGFF+TA+SL ANNIVL YR IT PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 81 EDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEEAVHTHTFQYIC 140
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGL E E+FN Y E+ SI DKD + + + L + F+TG + DQ L+ L+ F I
Sbjct: 141 ESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEADQAFLRDLVAFYVI 200
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID IN IK+ENP+LWT
Sbjct: 201 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKIENPHLWTE 260
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ + +A ELE YA DTMP+G+LGL+ + Y+ FI + R +QIG+ I+
Sbjct: 261 EFQAEVRGMLQEACELEVKYARDTMPRGMLGLSADLCEQYMHFITDRRAQQIGLPPIYGE 320
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQSGG LDW+
Sbjct: 321 NENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357
>gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase subunit beta [Amycolatopsis
mediterranei U32]
gi|384148055|ref|YP_005530871.1| ribonucleotide-diphosphate reductase subunit beta [Amycolatopsis
mediterranei S699]
gi|399536668|ref|YP_006549330.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei S699]
gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei U32]
gi|340526209|gb|AEK41414.1| ribonucleotide-diphosphate reductase subunit beta [Amycolatopsis
mediterranei S699]
gi|398317438|gb|AFO76385.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei S699]
Length = 357
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/337 (59%), Positives = 255/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RIN +K++IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+P GLT
Sbjct: 21 RINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAMQADIALWKSPDGLT 80
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER+++KRNLGFF+TA+SL ANNIVL YR IT PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 81 EDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEEAVHTHTFQYIC 140
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGL E E+FN Y E+ SI DKD + + + L + F+TG + DQ L+ L+ F I
Sbjct: 141 ESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEADQAFLRDLVAFYVI 200
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID IN IK+ENP+LWT
Sbjct: 201 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKIENPHLWTE 260
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ + +A ELE YA DTMP+G+LGL+ + + Y+ F+ + R +QIG+ IF
Sbjct: 261 EFQAEVRGMLKEACELEVKYARDTMPRGMLGLSAQLCEQYMHFVTDRRAQQIGLAPIFGE 320
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQSGG LDW+
Sbjct: 321 TENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357
>gi|424862958|ref|ZP_18286871.1| ribonucleoside-diphosphate reductase, beta subunit [SAR86 cluster
bacterium SAR86A]
gi|400757579|gb|EJP71790.1| ribonucleoside-diphosphate reductase, beta subunit [SAR86 cluster
bacterium SAR86A]
Length = 425
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 255/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL ANHWMPQEINM DI LWK+ GLT
Sbjct: 89 RVQVDQKMMINCKADLNQLVPFKYDWAWQKYLDGSANHWMPQEINMTNDIVLWKSEDGLT 148
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFFSTADSL ANN+VL YR IT PECRQY+LRQ+ EEAIHTHAYQY +
Sbjct: 149 EDERVIVKRNLGFFSTADSLVANNLVLALYRLITNPECRQYILRQSLEEAIHTHAYQYCI 208
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE EIFN Y E+ + K + + + ++D FKTG ++D++LLK+LI F C+
Sbjct: 209 ESLGMDEGEIFNMYREVPCVARKASWGLKYTQEISDPDFKTGTVESDKQLLKNLIAFYCV 268
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 269 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHVNFGIDVINQIKIENPHLWDD 328
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ + Q+ L+ ELE YA DTMP+G+LG+N + YL+FIAN R+ Q+G+ + F
Sbjct: 329 QMKSDAAQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLKFIANRRLTQLGLDEEFTG 388
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE+I ++KE NFFETRV EYQ GG L+WE
Sbjct: 389 VTNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALNWE 425
>gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
proteobacterium HTCC2148]
gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
proteobacterium HTCC2148]
Length = 425
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 198/337 (58%), Positives = 255/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K +IN D+NQLVP KY+WAW +YL CANHWMPQEINM D+ WK+ GL+
Sbjct: 89 RVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEINMTADVATWKSADGLS 148
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V R+LG+FSTADSL ANN+VL YR IT PECRQYLLRQAFEEAIHTHAYQY +
Sbjct: 149 DDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEEAIHTHAYQYCI 208
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE E+FN Y E+ S+ K + + L+D F TG + DQ+LL++LI F +
Sbjct: 209 ESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQETDQELLRNLIGFYAV 268
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENPNLWT
Sbjct: 269 TEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKLENPNLWTE 328
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E+ Q+ L+ E+E YA DTMP+G+LG+N + YL FIAN R+ Q+G+ + F
Sbjct: 329 TFQQEVIQMILEGTEIEIQYARDTMPRGVLGMNAAIMEEYLHFIANRRLSQLGLPEQFAG 388
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 389 AQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 425
>gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 360
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/338 (58%), Positives = 256/338 (75%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
ER+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+ GL
Sbjct: 23 ERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAMQADIALWKSRDGL 82
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
TE+ER ++KRNLGFF+TA+SL ANNIVL YR +T PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 83 TEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQAFEEAVHTHTFQYI 142
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
ESLGLDE E+FN Y E+ SI KD + + + L + +F+TG + DQ L+ L+ F
Sbjct: 143 CESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEADQAFLRDLVAFYV 202
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
I EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LW+
Sbjct: 203 IFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPHLWS 262
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF E+ Q+ +A ELE Y +TMP+G+LGLN + + Y+ FI + R +QIG+ IF
Sbjct: 263 EEFQAEVRQMLTEACELEVAYGRETMPRGVLGLNAELCEKYMHFITDRRAEQIGLAPIFG 322
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ ++KE NFFETRV+EYQ+GG LDW+
Sbjct: 323 ETENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 360
>gi|406916515|gb|EKD55524.1| hypothetical protein ACD_60C00001G0001, partial [uncultured
bacterium]
Length = 344
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/322 (61%), Positives = 248/322 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI +K+IIN D+NQLVPFKY WAW +YL +CANHWMP EINM D+ LWK+P GLT
Sbjct: 23 RIQVDDKRIINCRADLNQLVPFKYKWAWQKYLDACANHWMPNEINMSADVALWKDPHGLT 82
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +++RNLGFFSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQ+++
Sbjct: 83 EDERMIIERNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQHVI 142
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE +FN Y E+ ++ K + +P+ L D F TG +NDQ+LL+ LI F +
Sbjct: 143 ESLGMDESRVFNMYRELPAVAKKATWSLPYTQSLGDPHFNTGTPENDQRLLRDLIAFYVV 202
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG+FFYVGF Q+L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 203 FEGIFFYVGFTQVLSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQIKIENPHLWNE 262
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI + ++LEY YA DTMP+GILG+N + FK YL FIAN R QIG+ Q FP
Sbjct: 263 PFKQEIIDMIHTGVQLEYTYAIDTMPRGILGMNAEMFKEYLHFIANRRCAQIGLPQQFPG 322
Query: 319 ERNPFPWMSEMIHIKKESNFFE 340
NPFPWMSEM+ +KKE NFFE
Sbjct: 323 ATNPFPWMSEMMDLKKEKNFFE 344
>gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida
fusca YX]
gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
Length = 354
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/337 (59%), Positives = 257/337 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K++IN DVNQL+P KY WAW++YL++C NHWMP E++MQ DI LWK+ GLT
Sbjct: 18 RVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSMQADIALWKSKDGLT 77
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFF+TA+SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 78 EDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQYIC 137
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI KD + + + L + F TG + DQ L+ L+ F +
Sbjct: 138 ESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEADQAFLRDLVAFYVV 197
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LWT
Sbjct: 198 LEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPHLWTE 257
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ + ++A ELE Y +TMP+GILGLN K + Y+RFI + R +Q+G+ IF
Sbjct: 258 EFQDEVRTMLIEACELEAAYGRETMPRGILGLNAKLCEQYMRFITDRRAEQLGLAPIFGE 317
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ +KKE NFFETRV+EYQ+G L W+
Sbjct: 318 TENPFPWMSEMMDLKKEKNFFETRVIEYQTGSGLSWD 354
>gi|403509722|ref|YP_006641360.1| ribonucleotide reductase, small chain family protein [Nocardiopsis
alba ATCC BAA-2165]
gi|402798955|gb|AFR06365.1| ribonucleotide reductase, small chain family protein [Nocardiopsis
alba ATCC BAA-2165]
Length = 358
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/337 (59%), Positives = 253/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+ GLT
Sbjct: 22 RVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAMQADIALWKSKDGLT 81
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER ++KRNLGFF+TA+SL ANNIVL YR +T PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 82 EDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQAFEEAVHTHTFQYIC 141
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI KD + + + L D F TG + DQ L+ L+ F I
Sbjct: 142 ESLGLDEGELFNMYREVPSITAKDAWALKYTQNLEDPDFSTGTPEADQAFLRDLVAFYVI 201
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LW+
Sbjct: 202 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPHLWSE 261
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ ++ +A ELE Y +TMP+G+LGLN + Y+RFI + R +QIG+ IF
Sbjct: 262 EFQAEVRRMLTEACELEVAYGRETMPRGVLGLNADLCEQYMRFITDRRAEQIGLAPIFGE 321
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSEM+ ++KE NFFETRV+EYQ+GG LDW+
Sbjct: 322 TENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 358
>gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
Length = 389
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 251/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN DVNQL+PFKY WAW++YLS C NHWMP E++MQ DI LWK+ GLT
Sbjct: 53 RVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSMQADIALWKSRDGLT 112
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 113 DDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 172
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + L D FKTG + DQ L+ L+ F +
Sbjct: 173 ESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEADQAFLRDLVAFYVV 232
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GFVQIL+LGR+NKMIG +E YQYILRDES+H NFGID+IN IK+ENP+LWT
Sbjct: 233 FEGMWFYTGFVQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDVINQIKIENPHLWTK 292
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F E+ + A ELE Y DTMP+G LGLN ++Y+ IAN R Q+G+ +F
Sbjct: 293 TFQDEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCETYMHVIANRRCAQLGLAPVFAE 352
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 353 TDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 389
>gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
winogradskyi Nb-255]
gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255]
Length = 391
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 198/337 (58%), Positives = 252/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN DVNQL+P KY WAW++YLS C NHWMP E++MQ DI LWK+ GLT
Sbjct: 55 RVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQADIALWKSKDGLT 114
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+VKRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 115 DDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 174
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + L D FKTG + DQ L+ L+ F +
Sbjct: 175 ESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEADQAFLRDLVAFYVV 234
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GFVQIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LW+
Sbjct: 235 FEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDIINQIKIENPHLWSK 294
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E+ + A +LE Y DTMP+G LGLN ++Y+ IAN R Q+G+ +FP
Sbjct: 295 PFQEEVRAMLKNAADLEAAYGRDTMPRGFLGLNATLCETYMHVIANRRCAQLGLAPVFPD 354
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 355 ADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 391
>gi|390450341|ref|ZP_10235934.1| ribonucleotide-diphosphate reductase subunit beta [Nitratireductor
aquibiodomus RA22]
gi|389662689|gb|EIM74246.1| ribonucleotide-diphosphate reductase subunit beta [Nitratireductor
aquibiodomus RA22]
Length = 371
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/337 (59%), Positives = 252/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K++IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+ GLT
Sbjct: 35 RVSVDDKRMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQADIALWKSRDGLT 94
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEAIHTH +QYIV
Sbjct: 95 EDERRMIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAIHTHTFQYIV 154
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL LDE E+FN Y E+ SI DK + + + L D +FKTG + DQ L+ L+ F I
Sbjct: 155 ESLSLDEGELFNMYREVPSITDKAAWALDYTKHLDDPEFKTGTPEADQAFLRDLVAFYVI 214
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LWT
Sbjct: 215 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPHLWTK 274
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF E+ + A ELE Y DTMP+G LGLN + Y+ FIAN R Q+G+ ++
Sbjct: 275 EFQDEVRGMIADAAELEASYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQLGLAPVYAE 334
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 335 TDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 371
>gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured
marine bacterium EB0_39H12]
Length = 412
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K +IN D+NQLVPFKY+WAW +YL ANHWMPQE+NM DI LWK+ GLT
Sbjct: 76 RVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVNMTADIALWKSNDGLT 135
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQ FEEAIHTHAYQY +
Sbjct: 136 EDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQGFEEAIHTHAYQYCI 195
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLG+DE IFN Y EI S+ K + + + ++D F TG + D+ LLK+LI F C+
Sbjct: 196 ESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDETDKLLLKNLIAFYCV 255
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 256 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKLENPHLWDE 315
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ E Q+ L+ ELE YA DTMP+GILG+N + YL+FIAN R+ QIG+++ F
Sbjct: 316 QMRHEAAQMILEGTELEIQYARDTMPRGILGMNAGMMEEYLQFIANRRLVQIGLEEEFEG 375
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV+EYQ+GG L W+
Sbjct: 376 ASNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 412
>gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
hamburgensis X14]
gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
Length = 416
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/340 (58%), Positives = 251/340 (73%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R+ +K++IN DVNQL+P KY WAW++YLS C NHWMP E++MQ DI LWK+
Sbjct: 77 SGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSMQADIALWKSKD 136
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLT++ERR+VKRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +Q
Sbjct: 137 GLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQ 196
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE E+FN Y E+ SI DK + + L D FKTG + DQ L+ L+ F
Sbjct: 197 YIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEADQAFLRDLVAF 256
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
+ EG++FY GFVQIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+L
Sbjct: 257 YVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPHL 316
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
W+ F +E+ + A ELE Y DTMP+G LGLN + Y+ IAN R Q+G+ +
Sbjct: 317 WSKPFQEEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCEQYMHVIANRRCAQLGLAPV 376
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
F NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 377 FAEADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 416
>gi|414163224|ref|ZP_11419471.1| hypothetical protein HMPREF9697_01372 [Afipia felis ATCC 53690]
gi|410881004|gb|EKS28844.1| hypothetical protein HMPREF9697_01372 [Afipia felis ATCC 53690]
Length = 373
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/337 (59%), Positives = 250/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K++IN DVNQL+P KY WAW++YLS C NHWMP E++MQ DI LWK+ GLT
Sbjct: 37 RVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSMQADIALWKSRDGLT 96
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR +KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 97 EDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 156
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + L + FKTG + DQ L+ L+ F +
Sbjct: 157 ESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFKTGTVEADQSFLRDLVAFYVV 216
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LWT
Sbjct: 217 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKLENPHLWTK 276
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E+ + +A ELE Y DTMP+G LGLN + Y+ FIAN R QIG+ +F
Sbjct: 277 AFQEEVRGMIREAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQIGLAPVFAE 336
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L WE
Sbjct: 337 TENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373
>gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
43827]
gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
43827]
Length = 358
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 251/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K +IN DVNQL+P KY+WAW++YL+ CANHWMP E++MQ DI LW++P GLT
Sbjct: 22 RVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADIALWRSPNGLT 81
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER +KRNLGFF+T++SL ANN+VL YR+IT PECRQYLLRQAFEEA+HTH ++YI
Sbjct: 82 ADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEAVHTHTFEYIC 141
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
SLGLDE E+FN Y E+ SI DK + + + L D +F+TG + DQ L+ L+ F +
Sbjct: 142 SSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAFLRDLVAFYVV 201
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID IN IK+ENP+LW
Sbjct: 202 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDAINQIKIENPHLWGE 261
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F E+ + +A ELE Y DTMP G+LGLN + + Y+RFI N R Q+G++ +F
Sbjct: 262 AFQAEVRTMLAEACELEIAYGRDTMPNGLLGLNAELCEQYMRFITNRRCAQLGLEPVFAA 321
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV EY SGGTLDW+
Sbjct: 322 TENPFPWMSEAVDLKKEKNFFETRVTEYASGGTLDWD 358
>gi|414172327|ref|ZP_11427238.1| hypothetical protein HMPREF9695_00884 [Afipia broomeae ATCC 49717]
gi|410894002|gb|EKS41792.1| hypothetical protein HMPREF9695_00884 [Afipia broomeae ATCC 49717]
Length = 380
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 252/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K +IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+ GLT
Sbjct: 44 RVSVDDKAMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQADIALWKSRDGLT 103
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR +KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEAIHTH +QYIV
Sbjct: 104 DDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAIHTHTFQYIV 163
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + L D FKTG + D+ LL+ LI F
Sbjct: 164 ESLGLDEGELFNMYREVPSITDKAAWALKHTQNLEDPDFKTGTPEADRALLRDLITFYVC 223
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LWT
Sbjct: 224 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPHLWTG 283
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + +A ELE Y DTMP+G LGLN + Y+ FIAN R Q+G+ ++F
Sbjct: 284 EFQEEVRGMIREAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQLGLTRVFDE 343
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L WE
Sbjct: 344 TDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 380
>gi|414168813|ref|ZP_11424776.1| hypothetical protein HMPREF9696_02631 [Afipia clevelandensis ATCC
49720]
gi|410887549|gb|EKS35359.1| hypothetical protein HMPREF9696_02631 [Afipia clevelandensis ATCC
49720]
Length = 375
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/340 (57%), Positives = 253/340 (74%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R++ K++IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+
Sbjct: 36 SGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQADIALWKSRD 95
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR +KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +Q
Sbjct: 96 GLTEDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQ 155
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
Y+VESLGLDE E+FN Y E+ SI DK + + L + F TG ++DQ L+ L+ F
Sbjct: 156 YVVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFTTGTLESDQAFLRDLVAF 215
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
+ EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+L
Sbjct: 216 YVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKLENPHL 275
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF +++ + +A ELE Y DTMP+G LGLN + Y+ FIAN R QIG+ +
Sbjct: 276 WTKEFQEDVRGMLKEAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQIGLAPV 335
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
F NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 336 FAETDNPFPWMSEVMDLKKEKNFFETRVIEYQNGGALSWD 375
>gi|365857692|ref|ZP_09397680.1| ribonucleoside-diphosphate reductase, beta subunit
[Acetobacteraceae bacterium AT-5844]
gi|363715879|gb|EHL99301.1| ribonucleoside-diphosphate reductase, beta subunit
[Acetobacteraceae bacterium AT-5844]
Length = 377
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 196/337 (58%), Positives = 252/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K +IN DVNQL+P KY+WAW++YL+ C NHWMP EI+MQ DI LWK+ GLT
Sbjct: 41 RVSVDDKAMINCRADVNQLLPLKYHWAWEKYLAGCNNHWMPTEISMQADIALWKSRDGLT 100
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR +KRNLGFF+T++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 101 EDERRSIKRNLGFFATSESLVANNIVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 160
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI K + + + L+D F TG + D+ L+ LI F +
Sbjct: 161 ESLGLDEGELFNMYREVPSITAKAAWALKYTQNLSDPSFGTGTPEKDRGFLRDLIAFYVV 220
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+ +M+G +E YQYILRDES+H NFGID+IN I+ ENP LWT
Sbjct: 221 FEGMWFYTGFAQILSLGRRGRMVGIAEQYQYILRDESIHLNFGIDVINQIRAENPGLWTK 280
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + +A ELE Y DTMP+G LGLN + + Y+ FI N R Q+G+ +FP
Sbjct: 281 EFAEEVRGMLREACELEVAYGRDTMPRGFLGLNAELCEQYMHFITNRRCAQLGLAPLFPE 340
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 341 TENPFPWMSEVMDLKKEKNFFETRVIEYQNGGALSWD 377
>gi|407975879|ref|ZP_11156782.1| ribonucleotide-diphosphate reductase subunit beta [Nitratireductor
indicus C115]
gi|407428740|gb|EKF41421.1| ribonucleotide-diphosphate reductase subunit beta [Nitratireductor
indicus C115]
Length = 371
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 196/337 (58%), Positives = 247/337 (73%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+ GLT
Sbjct: 35 RVTVDEKRMINARADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQADIALWKSKDGLT 94
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ERR++KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 95 EDERRMLKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 154
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + L D F TG + DQ L+ L+ F +
Sbjct: 155 ESLGLDEGELFNMYREVPSITDKAAWALNHTQSLDDPAFATGTPEADQAFLRDLVAFYVV 214
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LW+
Sbjct: 215 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPHLWSP 274
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F E+ + A ELE Y DTMP+G LGLN + Y+ FIAN R Q+G+ +F
Sbjct: 275 AFQDEVRGMLRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQLGLAPVFAE 334
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 335 TENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 371
>gi|209885874|ref|YP_002289731.1| ribonucleotide-diphosphate reductase subunit beta [Oligotropha
carboxidovorans OM5]
gi|337740548|ref|YP_004632276.1| ribonucleoside-diphosphate reductase subunit beta NrdB [Oligotropha
carboxidovorans OM5]
gi|386029565|ref|YP_005950340.1| ribonucleoside-diphosphate reductase beta subunit NrdB [Oligotropha
carboxidovorans OM4]
gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
carboxidovorans OM5]
gi|336094633|gb|AEI02459.1| ribonucleoside-diphosphate reductase beta subunit NrdB [Oligotropha
carboxidovorans OM4]
gi|336098212|gb|AEI06035.1| ribonucleoside-diphosphate reductase beta subunit NrdB [Oligotropha
carboxidovorans OM5]
Length = 377
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 198/337 (58%), Positives = 248/337 (73%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K++IN DVNQL+P KY WAW++YLS C NHWMP E++MQ DI LWK+ GLT
Sbjct: 41 RVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSMQADIALWKSRDGLT 100
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR +KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 101 DDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 160
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + L D FKTG + DQ L+ L+ F +
Sbjct: 161 ESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEADQAFLRDLVAFYVV 220
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LWT
Sbjct: 221 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKLENPHLWTK 280
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F E+ + +A LE Y DTMP+G LGLN + Y+ FIAN R QIG+ +F
Sbjct: 281 AFQDEVRGMISEAAGLEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQIGLAPVFAE 340
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 341 TENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 377
>gi|338972085|ref|ZP_08627464.1| ribonucleotide reductase of class 1a (aerobic), beta subunit
[Bradyrhizobiaceae bacterium SG-6C]
gi|338234979|gb|EGP10090.1| ribonucleotide reductase of class 1a (aerobic), beta subunit
[Bradyrhizobiaceae bacterium SG-6C]
Length = 375
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/340 (57%), Positives = 253/340 (74%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R++ K++IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+
Sbjct: 36 SGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQADIALWKSRD 95
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR +KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +Q
Sbjct: 96 GLTEDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQ 155
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
Y+VESLGLDE E+FN Y E+ SI DK + + L + F TG ++DQ L+ L+ F
Sbjct: 156 YVVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFTTGTLESDQAFLRDLVAF 215
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
+ EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+L
Sbjct: 216 YVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKLENPHL 275
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF +++ + +A ELE Y DTMP+G LGLN + Y+ FIAN R QIG+ +
Sbjct: 276 WTKEFQEDVRGMLKEAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQIGLAPV 335
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
F NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 336 FAETDNPFPWMSEVMDLKKEKNFFETRVIEYQNGGALSWD 375
>gi|433606698|ref|YP_007039067.1| Ribonucleoside-diphosphate reductase [Saccharothrix espanaensis DSM
44229]
gi|407884551|emb|CCH32194.1| Ribonucleoside-diphosphate reductase [Saccharothrix espanaensis DSM
44229]
Length = 356
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 247/337 (73%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K +IN DVNQL+P KY+WAW++YL+ CANHWMP E++MQ DI LW++P GLT
Sbjct: 20 RVQVDDKSMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADIALWRSPTGLT 79
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER +KRNLGFF+T++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QY+
Sbjct: 80 DDERHTIKRNLGFFATSESLVANNIVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQYVC 139
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + + L D F+TG + DQ L+ L+ F +
Sbjct: 140 ESLGLDEGELFNMYREVPSITDKAAWALNYTQHLEDPGFRTGTPETDQAFLRDLVAFYVV 199
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+ GR+NKMIG +E YQYILRDES+H NFGID IN IK+ENP+LW+
Sbjct: 200 FEGMWFYTGFAQILSFGRRNKMIGIAEQYQYILRDESIHLNFGIDSINQIKIENPHLWSD 259
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F E+ + +A ELE Y DTMP G+LGLN + Y+ FI N R Q+G+ +F
Sbjct: 260 AFQAEVRTMLGEACELEIAYGRDTMPNGLLGLNADQCEQYMHFITNRRCAQLGLAPVFGP 319
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE I +KKE NFFETRV EY SG +LDW+
Sbjct: 320 ADNPFPWMSEAIDLKKEKNFFETRVTEYASGASLDWD 356
>gi|384565723|ref|ZP_10012827.1| ribonucleotide reductase, beta subunit [Saccharomonospora glauca
K62]
gi|384521577|gb|EIE98772.1| ribonucleotide reductase, beta subunit [Saccharomonospora glauca
K62]
Length = 349
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+P GLT
Sbjct: 13 RVNVDDKAMINARADVNQLLPLKYGWAWEKYLAGCDNHWMPTEVAMQADIALWKSPNGLT 72
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLGFF+TA+SL ANN+VL YRH+T PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 73 DDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQYIC 132
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAY E+ SI DKD + + + L + F+TG + D+ L+ L+ F +
Sbjct: 133 ESLGLDEGELFNAYREVPSIADKDSWALQYTRNLENPNFRTGTVEADRDFLRDLVAFYVV 192
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF Q+L+LGR+NKM+G +E YQYILRDES+H NFGID IN IK ENP LWT
Sbjct: 193 FEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKAENPRLWTP 252
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + ++A ELE YA DTMP+ +LGL+ + + Y+ FI + R Q+G++ +F
Sbjct: 253 EFQREVRDMLVEACELEVAYARDTMPRPMLGLSAELCEQYMHFITDRRAAQLGLEPVFGE 312
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + ++KE NFFETRV++Y+SG L+W+
Sbjct: 313 RENPFPWMSEAMDLRKEKNFFETRVIDYRSGAALEWD 349
>gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
aurantiaca T-27]
gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
aurantiaca T-27]
Length = 371
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 249/337 (73%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K +IN DVNQL+P KY WAW++YLS C NHWMP E++MQ D+ +W++ GLT
Sbjct: 35 RVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQADLAIWRSRDGLT 94
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR +KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEAIHTH +QYI
Sbjct: 95 DDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAIHTHTFQYIC 154
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI K + + + L D F TG + DQ L+ L+ F +
Sbjct: 155 ESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQAFLRDLVAFYVV 214
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP+LW+
Sbjct: 215 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKVENPHLWSA 274
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E+ Q+ +A ELE Y DTMP+G LGLN ++Y+ FI N R Q+G+ +FP
Sbjct: 275 AFQEEVRQMLAEACELEVAYGRDTMPRGFLGLNAALCETYMHFITNRRCAQLGLAPVFPE 334
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE I +KKE NFFETRV+EYQ+GG L W+
Sbjct: 335 TDNPFPWMSEAIDLKKEKNFFETRVIEYQNGGALKWD 371
>gi|375100291|ref|ZP_09746554.1| ribonucleotide reductase, beta subunit [Saccharomonospora cyanea
NA-134]
gi|374661023|gb|EHR60901.1| ribonucleotide reductase, beta subunit [Saccharomonospora cyanea
NA-134]
Length = 349
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 190/337 (56%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+P GLT
Sbjct: 13 RVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVAMQADIALWKSPDGLT 72
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++KRNLGFF+TA+SL ANN+VL YRH+T PECRQYLLRQAFEEA+HTH +QY+
Sbjct: 73 DDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQYVC 132
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAY E+ SI DKD + + + L + F+TG + DQ+ L+ L+ F +
Sbjct: 133 ESLGLDEGELFNAYREVPSIADKDSWALRYTRNLENPDFRTGTVEADQEFLRDLVAFYVV 192
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF Q+L+LGR+NKM+G +E YQYILRDES+H NFGID IN IK ENP+LWT
Sbjct: 193 FEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKAENPHLWTP 252
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + ++A LE YA DTMP+ +LGL+ + + Y+ FI + R Q+G++ +F
Sbjct: 253 EFQREVRDMLVEACALEVAYARDTMPRPMLGLSAELCEQYMHFITDRRAAQLGLEPVFGE 312
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + ++KE NFFETRV +Y+SG L+W+
Sbjct: 313 PENPFPWMSEAMDLRKEKNFFETRVTDYRSGAALEWD 349
>gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
ATCC 51888]
gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
ATCC 51888]
Length = 374
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/337 (58%), Positives = 247/337 (73%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K +IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+ GLT
Sbjct: 38 RVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQADIALWKSKDGLT 97
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
EEERR++KRNLGFF+ ++SL ANNIVL YR++T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 98 EEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQAFEEAVHTHTFQYIV 157
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + + L D FKTG + DQ L+ LI F +
Sbjct: 158 ESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKETDQAFLRDLIAFYVV 217
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK EN +LW+
Sbjct: 218 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKAENAHLWSK 277
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F E+ + A +LE Y DTMP G+LGLN + Y+ FIAN R Q+G+ +F
Sbjct: 278 AFQDEVRGMLRDAAQLEAAYGRDTMPTGLLGLNPGLTEQYMEFIANRRCAQLGLTPVFKD 337
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L WE
Sbjct: 338 RENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 374
>gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
c2]
gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
c2]
Length = 398
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/337 (59%), Positives = 249/337 (73%), Gaps = 1/337 (0%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN-PIGL 77
R++ K+IIN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK GL
Sbjct: 62 RVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQADIALWKGRDGGL 121
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
T +ER ++ RNLGFF+TA+SL ANNIVL Y+ +T PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 122 TADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAFEEAVHTHTFQYI 181
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGL E E+FN Y EI SI KDE+ + + L D F T TK Q L+ L+ F
Sbjct: 182 VESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGAQDFLRDLVAFYV 241
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+ EG++FY GF QIL+LGR+NKM G +E YQYI+RDES+H NFGID+IN IK+ENP+LWT
Sbjct: 242 VFEGMWFYTGFAQILSLGRRNKMTGIAEQYQYIMRDESIHMNFGIDVINQIKIENPHLWT 301
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
+F E+ ++ +A ELE YA DTMP G+LGLN + YL FIAN R QIG+ ++FP
Sbjct: 302 EDFKAEVTRMLKEAAELEIAYARDTMPHGLLGLNAEMCAEYLHFIANRRCNQIGLAELFP 361
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
NPFPWMSE+I +KKE NFFETRV +YQ+GG L+W
Sbjct: 362 GATNPFPWMSEVIDLKKEKNFFETRVTDYQTGGALNW 398
>gi|375095904|ref|ZP_09742169.1| ribonucleotide reductase, beta subunit [Saccharomonospora marina
XMU15]
gi|374656637|gb|EHR51470.1| ribonucleotide reductase, beta subunit [Saccharomonospora marina
XMU15]
Length = 346
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 192/337 (56%), Positives = 251/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ +K +IN DVNQL+P KY WAW +YL C NHWMP E++MQ DI LWK+P GLT
Sbjct: 10 RVSVDDKAMINSRADVNQLLPMKYGWAWQKYLVGCDNHWMPTEVSMQADIALWKSPDGLT 69
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER L+KRNLGFF+TA+SL ANN+VL YR +T PECRQYLLRQAFEEA+HTH +QYI
Sbjct: 70 EDERLLLKRNLGFFATAESLVANNLVLAVYRQLTNPECRQYLLRQAFEEAVHTHTFQYIC 129
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAY E+ SI DKD + + + L + F TG + DQ L+ L+ F +
Sbjct: 130 ESLGLDEGELFNAYREVPSIADKDAWALRYTRNLENPDFATGTFEADQDFLRDLVAFYVV 189
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF Q+L+LGR+NKM+G +E YQYILRDES+H NFGID IN I++ENP+LWT
Sbjct: 190 FEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIRLENPHLWTP 249
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +E+ + ++A ELE YA DTMP+G+LGL + Y+ FI + R Q+G++ +F
Sbjct: 250 RFAEEVRGMLVEACELEVAYARDTMPRGVLGLTAALCEQYMHFITDRRAAQLGLEPVFGE 309
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPW+SE I ++KE NFFETRV +Y+SGG L+W+
Sbjct: 310 RENPFPWLSEAIDLRKEKNFFETRVTDYRSGGALEWD 346
>gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
palustris TIE-1]
gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
TIE-1]
Length = 373
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/337 (58%), Positives = 248/337 (73%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ +K++IN DVNQL+P KY+WAW++YL++C NHWMP E++MQ DI LWK+ GLT
Sbjct: 37 RVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQADIALWKSRDGLT 96
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E+ER +VKRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 97 EDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQYIV 156
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y E+ SI DK + + + L D F+TG DQ L LI F +
Sbjct: 157 ESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPATDQAFLLDLIAFYVV 216
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+ KM G +E YQYILRDES+H NFGID+IN IK+EN +WT
Sbjct: 217 FEGMWFYTGFAQILSLGRRQKMTGIAEQYQYILRDESIHLNFGIDVINQIKLENAAVWTA 276
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +I + A ELE Y DTMP G+LGLN +SY+ FIAN R Q+G++ +F
Sbjct: 277 SFQDDIRGMIHDAAELEAAYGRDTMPHGLLGLNAALCESYMHFIANRRCVQLGLRPVFAE 336
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG LDW+
Sbjct: 337 TDNPFPWMSETMDLKKEKNFFETRVIEYQNGGALDWD 373
>gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
DSM 43017]
gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
DSM 43017]
Length = 349
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 193/349 (55%), Positives = 258/349 (73%), Gaps = 1/349 (0%)
Query: 7 NKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
N+ TL + R+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ
Sbjct: 2 NRNLTLDFGA-ARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQA 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
DI LWK+P GLT++ER ++KRNLGFF+TA+SL ANN+VL YRH+T PECRQYLLRQAFE
Sbjct: 61 DIALWKSPDGLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFE 120
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+HTH +QYI SLGLDE E+FNAY E+ SI +KD + + + L D F TG + DQ
Sbjct: 121 EAVHTHTFQYICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQ 180
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
+ L+ L+ F + EG++FY GF Q+L+LGR+NKM+G +E YQYILRDES+H NFG+D IN
Sbjct: 181 EFLRDLVAFYVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGVDCIN 240
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
IK ENP+LWT EF +++ + ++A ELE YA DTMP+ +LGL+ + + Y+ FI + R
Sbjct: 241 QIKAENPHLWTPEFQQQVRDMLVEACELEVAYAHDTMPRPMLGLSAELCEQYMHFITDRR 300
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Q+G+ +F NPFPWMSE+I ++KE NFFETRV +Y+SG L W+
Sbjct: 301 AAQLGLDPVFGERENPFPWMSEVIDLRKEKNFFETRVTDYRSGAALAWD 349
>gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
Length = 373
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/340 (57%), Positives = 249/340 (73%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R++ K++IN DVNQL+P KY WAW++YL+ C NHWMP E++MQ DI LWK+
Sbjct: 34 SGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQADIALWKSRD 93
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLT++ERR +KRNLGFF+ ++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +Q
Sbjct: 94 GLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQ 153
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE E+FN Y E+ SI DK + + L + F TG + DQ L+ L+ F
Sbjct: 154 YIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEADQSFLRDLVAF 213
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
+ EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+EN +L
Sbjct: 214 YVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKLENQHL 273
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT F +++ + A ELE Y DTMP+G LGLN + Y+ FIAN R QIG+ +
Sbjct: 274 WTKAFQEDVRGMIRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRCAQIGLTPV 333
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
FP NPFPWMSE + +KKE NFFETRV+EYQ+GG L WE
Sbjct: 334 FPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373
>gi|383827739|ref|ZP_09982828.1| ribonucleotide reductase, beta subunit [Saccharomonospora
xinjiangensis XJ-54]
gi|383460392|gb|EID52482.1| ribonucleotide reductase, beta subunit [Saccharomonospora
xinjiangensis XJ-54]
Length = 349
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 194/349 (55%), Positives = 257/349 (73%), Gaps = 1/349 (0%)
Query: 7 NKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K TL + R+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ
Sbjct: 2 SKNLTLDFGA-ARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVAMQA 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
DI LWK+ GL+++ER ++KRNLGFF+TA+SL ANN+VL YRH+T PECRQYLLRQAFE
Sbjct: 61 DIALWKSRDGLSDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFE 120
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+HTH +QYI ESLGLDE E+FNAY E+ SI DKD + + + L D F+TG + DQ
Sbjct: 121 EAVHTHTFQYICESLGLDEGELFNAYREVPSIADKDSWALRYTRDLDDPGFRTGTPEADQ 180
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
L+ L+ F + EG++FY GF Q+L+LGR+NKM+G +E YQYILRDES+H NFGID IN
Sbjct: 181 NFLRDLVAFYVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCIN 240
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
IK+ENP+LWT EF +E+ + ++A LE YA DTMP+ ILGL+ + + Y+ FI + R
Sbjct: 241 QIKVENPHLWTPEFQQEVRDMLVEACALEVAYARDTMPRPILGLSAELCEQYMHFITDRR 300
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Q+G+ +F NPFPWMSE + ++KE NFFETRV +Y+SG L+W+
Sbjct: 301 AAQLGLDPVFGERENPFPWMSEAMDLRKEKNFFETRVTDYRSGAALEWD 349
>gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
palustris BisB18]
gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
BisB18]
Length = 386
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/340 (57%), Positives = 250/340 (73%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S R++ +K +IN DVNQL+P K+ WAW++YL++C NHWMP E++MQ DI LW +
Sbjct: 47 SGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQADIALWTSRD 106
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR +KRNLGFF+T++SL ANNIVL YRH+T PECRQYLLRQAFEEA+HTH +Q
Sbjct: 107 GLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAFEEAVHTHTFQ 166
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
YIVESLGLDE E+FN Y E+ SI DK + + L D F TG + D+ L+ L+ F
Sbjct: 167 YIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEADRAFLRDLVAF 226
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
+ EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+ENP L
Sbjct: 227 YVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIENPKL 286
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT F +E+ + +A ELE Y+ DTMP+G LGLN + Y+ FI N R Q+G+ I
Sbjct: 287 WTAGFQEELRGMLQEAAELEAAYSRDTMPRGFLGLNAALCEQYMHFITNRRCAQLGLAPI 346
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
F NPFPWMSE + +KKE NFFETRV+EYQ+GG L W+
Sbjct: 347 FAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGALTWD 386
>gi|381161285|ref|ZP_09870515.1| ribonucleotide reductase, beta subunit [Saccharomonospora azurea
NA-128]
gi|379253190|gb|EHY87116.1| ribonucleotide reductase, beta subunit [Saccharomonospora azurea
NA-128]
Length = 361
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 188/337 (55%), Positives = 253/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+ GLT
Sbjct: 25 RVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVAMQADIALWKSKDGLT 84
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++ RNLGFF+TA+SL ANN+VL YRH+T PECRQYLLRQAFEEA+HTH +QY+
Sbjct: 85 DDERLMLTRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQYVC 144
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAY E+ SI DKD + + + L + +F+TG + DQ+ L+ L+ F +
Sbjct: 145 ESLGLDEGELFNAYREVPSIADKDSWALRYTRSLENPEFRTGTVEADQEFLRDLVAFYVV 204
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF Q+L+LGR+NKM+G +E YQYILRDES+H NFGID IN IK ENP+LWT
Sbjct: 205 FEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKAENPHLWTP 264
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + ++A LE YA DTMP+ +LGL+ + + Y+ FI + R Q+G++ +F
Sbjct: 265 EFQQEVRDMLVEACALEVAYARDTMPRPMLGLSAELCEQYMHFITDRRAAQLGLEPVFGV 324
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + ++KE NFFETRV +Y+SG L+W+
Sbjct: 325 ADNPFPWMSEAMDLRKEKNFFETRVTDYRSGAALEWD 361
>gi|418463213|ref|ZP_13034234.1| ribonucleotide reductase, beta subunit [Saccharomonospora azurea
SZMC 14600]
gi|359734101|gb|EHK83083.1| ribonucleotide reductase, beta subunit [Saccharomonospora azurea
SZMC 14600]
Length = 361
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 188/337 (55%), Positives = 253/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K +IN DVNQL+P KY WAW++YL+ C NHWMP E+ MQ DI LWK+ GLT
Sbjct: 25 RVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVAMQADIALWKSKDGLT 84
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ER ++ RNLGFF+TA+SL ANN+VL YRH+T PECRQYLLRQAFEEA+HTH +QY+
Sbjct: 85 DDERLMLTRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQYVC 144
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FNAY E+ SI DKD + + + L + +F+TG + DQ+ L+ L+ F +
Sbjct: 145 ESLGLDEGELFNAYREVPSIADKDSWALRYTRSLENPEFRTGTVEADQEFLRDLVAFYVV 204
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF Q+L+LGR+NKM+G +E YQYILRDES+H NFGID IN IK ENP+LWT
Sbjct: 205 FEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQIKAENPHLWTP 264
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ + ++A LE YA DTMP+ +LGL+ + + Y+ FI + R Q+G++ +F
Sbjct: 265 EFQQEVRDMLVEACALEVAYARDTMPRPMLGLSAELCEQYMHFITDRRAAQLGLEPVFGV 324
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + ++KE NFFETRV +Y+SG L+W+
Sbjct: 325 ADNPFPWMSEAMDLRKEKNFFETRVTDYRSGAALEWD 361
>gi|416006883|ref|ZP_11561124.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Acidithiobacillus sp. GGI-221]
gi|339836431|gb|EGQ64025.1| ribonucleotide-diphosphate reductase subunit beta
[Acidithiobacillus sp. GGI-221]
Length = 274
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/274 (71%), Positives = 234/274 (85%)
Query: 62 INMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLL 121
+ M RDI LWK+P GLTE+ERR++KRNLGFF+TADSLAANNIVLGTYRHITAPECRQY+L
Sbjct: 1 VQMARDIALWKDPKGLTEDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYML 60
Query: 122 RQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181
RQAFEEAIHTHAYQYIVES+GLDE EIFN YHE+ S+RDKDEFL+PFID+L D FKTG
Sbjct: 61 RQAFEEAIHTHAYQYIVESIGLDEGEIFNMYHEVPSVRDKDEFLMPFIDILADPLFKTGT 120
Query: 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
+NDQKLL+SLIVFA IMEG FFYVGF QILA+GRQNKM+G++E YQYILRDESMHCNFG
Sbjct: 121 QENDQKLLRSLIVFAAIMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFG 180
Query: 242 IDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRF 301
ID+ N IK+ENP+LWT F +EI L + +ELE YA+DTMP+G+LGLN FK+Y+++
Sbjct: 181 IDMANQIKIENPDLWTAAFQQEIVDLIRRGVELECAYADDTMPRGVLGLNAPIFKNYVKY 240
Query: 302 IANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
I N R+ Q+G+ Q + +NPFPWMSEM+ +KKE
Sbjct: 241 IGNRRLVQLGLPQQYSGVQNPFPWMSEMMDLKKE 274
>gi|431805704|ref|YP_007232605.1| ribonucleotide reductase subunit beta [Liberibacter crescens BT-1]
gi|430799679|gb|AGA64350.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Liberibacter crescens BT-1]
Length = 371
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/337 (58%), Positives = 254/337 (75%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI K+I+N +DVNQL+P KY WAW++YL +C NHWMP E++MQ DI LWK+ GLT
Sbjct: 35 RIKVDEKRILNARSDVNQLLPLKYKWAWEKYLCACNNHWMPTEVSMQADIALWKSKNGLT 94
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR++KRNLGFF++++SL ANNIVL Y+H++ ECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 95 DDERRMIKRNLGFFASSESLVANNIVLAIYKHLSNAECRQYLLRQAFEEAVHTHTFQYIV 154
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESLGLDE E+FN Y EI SI +K + + + L D F TG K DQ L+ LI F I
Sbjct: 155 ESLGLDEGELFNMYREIPSITNKAVWALKYTQSLNDKNFITGTPKADQDFLRDLIAFYVI 214
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR+NKM+G +E YQYILRDES+H NFGID+IN IK+E P LWT
Sbjct: 215 FEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQIKIECPYLWTP 274
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
F +EI+ + +A LE Y++DTMP G+LG+N ++ + Y+ FIAN R Q+G+ +F
Sbjct: 275 SFQEEIQTMLKEAAVLEAAYSKDTMPSGLLGINTESCQQYMYFIANRRCSQLGLAHVFED 334
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + +KKE NFFETRV+EYQ+GG L+WE
Sbjct: 335 TDNPFPWMSESMDLKKEKNFFETRVIEYQNGGALEWE 371
>gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 354
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 250/337 (74%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R++ K++IN DVNQL+P KY WAW++YL+ C NHWMP E+ M DI LW++P GLT
Sbjct: 18 RVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMGADIALWRHPDGLT 77
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER ++KRNLGFF+T++SL ANNIVL YRHIT PECRQYLLRQAFEEAIHTH +QYIV
Sbjct: 78 ADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHTFQYIV 137
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL LDE E+FN Y E+ SI DK + + + L F T + + Q L+ L+ F +
Sbjct: 138 ESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGAQSFLRDLVAFYVV 197
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGRQNKM G +E+YQYILRDES+H NFGID+IN I+ ENP LWT
Sbjct: 198 FEGMWFYTGFAQILSLGRQNKMTGIAEMYQYILRDESIHLNFGIDVINQIRHENPELWTN 257
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F +E+ + +A+ELE YA DTMP+G+LGLN + Y+ FI N R Q+G+K+++P
Sbjct: 258 DFEQEVLTMLREAVELEVAYARDTMPRGMLGLNADMCEEYMHFITNRRCAQLGLKELYPG 317
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE++ ++KE NFFETRV +Y++GG L W+
Sbjct: 318 ATNPFPWMSEVMDLQKEKNFFETRVTDYRTGGALQWD 354
>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/338 (56%), Positives = 253/338 (74%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
+R+N +K+++N +DVNQL+P KY WAW++YLS+C NHWMP E+ MQ D+ LWK+ GL
Sbjct: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
T++ER ++KRNLGFF++++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ SLGLDE E+FN Y E+ SI K + + + L+ F TG DQ+ L+ L VF
Sbjct: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
+ EG++FY GF QIL+LGR NKM+G +E YQYI+RDES+H NFGID+IN IK+ENP+LWT
Sbjct: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF ++ + +A LE YA +TMPKG +GLN + + Y++FIAN R QIG++ +F
Sbjct: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Y NPFPWMSE+I +KKE NFFETRV EYQ G L W+
Sbjct: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
>gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
Length = 354
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/341 (56%), Positives = 247/341 (72%), Gaps = 4/341 (1%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG-- 76
R+ +K +IN DVNQL+P KY WAWD+YL++C NHWMP E++MQ DI LW+ P G
Sbjct: 14 RVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQADIALWRRPAGAK 73
Query: 77 --LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
LTE+ER ++KRNLGFF+TA+SL ANNIVL YR ++ PECRQYLLRQAFEEA+HTH +
Sbjct: 74 DGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLRQAFEEAVHTHTF 133
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QYI SLGLDE E+FN Y E+ SI KD + + + LTD F+TG + D L+ LI
Sbjct: 134 QYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTPEADTDFLRDLIA 193
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
F + EG++FY GF QIL LGR+NKM+G +E YQYILRDES+H NFGID IN IK+ENP+
Sbjct: 194 FYVVFEGMWFYTGFAQILVLGRRNKMVGIAEQYQYILRDESLHLNFGIDCINQIKLENPH 253
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
LWT F E+ ++ +A ELE Y T+P G+LGL + + Y+ FI + R +Q+G+
Sbjct: 254 LWTPAFQAEVRRMLTEACELEVAYGRATLPNGMLGLTAELCEQYMHFITDRRAEQLGLAP 313
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+F RNPF WMSE++ +KKE NFFETRV+EYQSGG L W+
Sbjct: 314 LFGETRNPFGWMSEVMDLKKEKNFFETRVIEYQSGGGLSWD 354
>gi|403739759|ref|ZP_10952095.1| ribonucleoside-diphosphate reductase beta subunit [Austwickia
chelonae NBRC 105200]
gi|403190502|dbj|GAB78865.1| ribonucleoside-diphosphate reductase beta subunit [Austwickia
chelonae NBRC 105200]
Length = 359
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 248/345 (71%)
Query: 11 TLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+L R++ +K +IN +DVNQL+P KY WAW++Y++ C+NHWMP E+ MQ DI
Sbjct: 15 SLHTQDVGRVHVDDKAMINARSDVNQLLPMKYGWAWEKYIAGCSNHWMPTEVAMQADIAQ 74
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
W++ LT++ER ++KRNLGFF+TA+SL ANNIVL YRHIT PECRQYLLRQAFEEA+H
Sbjct: 75 WRSADALTDDERLMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFEEAVH 134
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
TH +QYI SLGLDE E+FN Y E+ SI DKD + + + L F TG + DQ L+
Sbjct: 135 THTFQYICTSLGLDEGELFNMYREVPSITDKDAWALKYTQNLESDTFATGTVEADQAFLR 194
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
L+ F + EG++FY GF QIL+LGR+ KM+G +E YQYILRDES+H NFGID IN IK+
Sbjct: 195 DLVAFYVVFEGMWFYTGFAQILSLGRRGKMVGIAEQYQYILRDESIHLNFGIDCINQIKL 254
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP+LWT +F E+ + +A +LE YA D MP+G+LG+ V + Y+ FI + R Q+
Sbjct: 255 ENPHLWTADFQDEVRTMLREACDLEIAYARDIMPRGMLGMTVAHVEQYMHFITDRRCGQL 314
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
G+ ++ + NPFPWMSE + + KE NFFETRV EYQ+GG+L W+
Sbjct: 315 GLTALYGEDENPFPWMSESMDLVKEKNFFETRVTEYQTGGSLSWD 359
>gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 372
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 246/337 (72%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
RI+ K++IN +DVNQL+P KY WAW++YL C NHWMP E++MQ DI LW++ GLT
Sbjct: 36 RIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVSMQADIALWQSKNGLT 95
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+ER ++KRNLGFF+T++SL ANNIVL YRHI+ PECRQYLLRQAFEEA+HTH +QYIV
Sbjct: 96 NDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQAFEEAVHTHTFQYIV 155
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL L+E E+FN Y EI SI +K + + + L F TG DQ L+ LI F +
Sbjct: 156 ESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDDRDQDFLRDLIAFYVV 215
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
EG++FY GF QIL+LGR NKM+G +E YQYI+RDES+H NFGID+IN IK+ENP+LWT
Sbjct: 216 FEGMWFYTGFAQILSLGRYNKMVGIAEQYQYIMRDESVHLNFGIDMINQIKIENPHLWTE 275
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+F +E+ ++ +A LE Y +DTMPK LG+N + Y+ FI N R QIG+ +F
Sbjct: 276 DFQQEVRKMLQEAALLEVAYGKDTMPKPFLGINANLCEKYMYFITNRRCTQIGLDPVFEK 335
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE+I ++KE NFFETRV EYQ G +LDW+
Sbjct: 336 TENPFPWMSEVIDLQKEKNFFETRVTEYQKGTSLDWD 372
>gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium
vinosum DSM 180]
Length = 280
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/280 (66%), Positives = 226/280 (80%)
Query: 32 TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGF 91
D+NQLVPFKY+WAW +YL +CANHWMPQEI+M D+ LWK+P GLTE+ER +VKRNLGF
Sbjct: 1 ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60
Query: 92 FSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNA 151
FSTADSL ANN+VL YRHIT PECRQYLLRQAFEEA+HTHAYQY+VESLGLDE EIFN
Sbjct: 61 FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120
Query: 152 YHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQI 211
Y E+ ++ K E+ +PF L D F+TG +NDQKLL L+ F I EG+FFYVGFVQI
Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFYVIFEGIFFYVGFVQI 180
Query: 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKA 271
L++GR+NKM G++E +QYILRDESMH NFGID+IN IK+ENP+LWT +F +E+ + +A
Sbjct: 181 LSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTPDFRQELVGMIREA 240
Query: 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIG 311
+ELE YA DTMP+G+LGLN + F+ YL FIAN R QIG
Sbjct: 241 VELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIG 280
>gi|406939576|gb|EKD72566.1| hypothetical protein ACD_45C00639G0001 [uncultured bacterium]
Length = 301
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/298 (61%), Positives = 228/298 (76%)
Query: 58 MPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECR 117
MP EINM D+ LWK+P GLTE+ER ++KRNLGFFSTADSL ANN+VL YRHIT PECR
Sbjct: 1 MPNEINMAADVALWKDPNGLTEDERTIIKRNLGFFSTADSLVANNLVLAVYRHITNPECR 60
Query: 118 QYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKF 177
QYLLRQAFEEA+HTHAYQ+++ESL +DE E+FN Y EI ++ K + I + L D F
Sbjct: 61 QYLLRQAFEEALHTHAYQHVIESLSMDEAEVFNMYREIPAVARKAAWSIKYTKSLGDPTF 120
Query: 178 KTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMH 237
TG +NDQ+LL+ LI F I EG+FFYVGF QIL++GR+NKM G++E +QYILRDESMH
Sbjct: 121 STGTVENDQRLLRDLIAFYVIFEGIFFYVGFTQILSMGRRNKMSGTAEQFQYILRDESMH 180
Query: 238 CNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKS 297
NFGID+IN IK+ENP+LWT +E + + ++LEY YA DTMP+GILGLN FK
Sbjct: 181 LNFGIDVINQIKIENPHLWTEALQQEAIDMVREGVDLEYTYAVDTMPRGILGLNATMFKE 240
Query: 298 YLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
YL++IAN R+ QIG+ + NPFPWMSEM+ +KKE NFFETRV EYQ+GG L W+
Sbjct: 241 YLQYIANRRLAQIGLPAQYANVSNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALQWD 298
>gi|268316001|ref|YP_003289720.1| ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
4252]
gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
4252]
Length = 347
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/338 (57%), Positives = 244/338 (72%), Gaps = 3/338 (0%)
Query: 19 RINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
RI +K++IN H DVNQL+P KY WAW+ YL+ C NHWMP EI M RDIELW++ L
Sbjct: 11 RIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRSD-KL 69
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
T++ER ++ RNLGFF+TA+SL NNIVL +RH+T PECRQYLLRQAFEEAIHTHA+ YI
Sbjct: 70 TDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAFLYI 129
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE E+FN Y EI ++ KDEF + + F T + Q LK+LI +
Sbjct: 130 VESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIGYYV 189
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEG+FFY GF IL+ RQNKM G E +QYILRDE++H NFGIDLIN IK ENP LWT
Sbjct: 190 IMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPELWT 249
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E++QL +A+ELE YA D +P+G+LGL F+ Y+++IA+ R+++IG+K +
Sbjct: 250 PEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQYIADRRLERIGLKARYG 309
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE I + KE NFFETRV EYQ L W+
Sbjct: 310 -SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346
>gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
44963]
gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
44963]
Length = 361
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/332 (57%), Positives = 244/332 (73%), Gaps = 3/332 (0%)
Query: 25 KQIING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++ING H DVNQL+P KY WAW+ YL+ CANHWMP E+ M +DIE W++ LT ER
Sbjct: 32 KRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMTKDIETWRSN-KLTAGERL 90
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
++ RNLGFF+TA+SL NN+VL ++HIT ECRQYLLRQAFEEAIHTH + YIVESLGL
Sbjct: 91 VIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAFEEAIHTHTFLYIVESLGL 150
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E E+FN YHEI SI++KDEF + + D F T + QK L++LI + IMEG+F
Sbjct: 151 SEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGMQKFLQNLIGYYIIMEGIF 210
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GFV +L+ R+N M G E +QYILRDE++H NFGIDLIN IK ENP LWTTEF
Sbjct: 211 FYSGFVMMLSFHRRNLMTGVGEQFQYILRDETIHLNFGIDLINGIKAENPELWTTEFQAH 270
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
I L +A+ELE YA D +P GILGLN ++F+SY++ +A+ R+++IG+ IF + +PF
Sbjct: 271 IYDLIKRAVELEIAYAYDCLPNGILGLNAESFRSYVQHVADRRLERIGLAPIF-HSSHPF 329
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PWMSE + + KE NFFETRV EYQ+ TL+WE
Sbjct: 330 PWMSETMDLSKEKNFFETRVTEYQAASTLEWE 361
>gi|345302304|ref|YP_004824206.1| ribonucleotide reductase [Rhodothermus marinus SG0.5JP17-172]
gi|345111537|gb|AEN72369.1| ribonucleotide reductase [Rhodothermus marinus SG0.5JP17-172]
Length = 347
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/338 (57%), Positives = 243/338 (71%), Gaps = 3/338 (0%)
Query: 19 RINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
RI +K++IN H DVNQL+P KY WAW+ YL+ C NHWMP EI M RDIELW++ L
Sbjct: 11 RIRVEDKRLINCHEVDVNQLMPVKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRSD-KL 69
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
T++ER ++ RNLGFF+TA+SL NNIVL +RH+T PECRQYLLRQAFEEAIHTHA+ YI
Sbjct: 70 TDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAFLYI 129
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGLDE E+FN Y EI ++ KDEF + + F T + Q LK+LI +
Sbjct: 130 VESLGLDEGEVFNMYREIPAVARKDEFEMELTRKVLRPDFTTATVEGAQAFLKNLIGYYV 189
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEG+FFY GF IL+ RQNKM G E +QYILRDE++H NFGIDLIN IK ENP LWT
Sbjct: 190 IMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPELWT 249
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF +E++QL +A+ELE YA D +P+G+LGL F+ Y++ IA+ R+++IG+K +
Sbjct: 250 PEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQNIADRRLERIGLKARYG 309
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+NPFPWMSE I + KE NFFETRV EYQ L W+
Sbjct: 310 -SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346
>gi|384915488|ref|ZP_10015707.1| Ribonucleoside-diphosphate reductase subunit beta
[Methylacidiphilum fumariolicum SolV]
gi|384527132|emb|CCG91576.1| Ribonucleoside-diphosphate reductase subunit beta
[Methylacidiphilum fumariolicum SolV]
Length = 351
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/338 (56%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+RIN K++IN DVNQL+P KY WAW+ YL+ CAN+W+P E+ MQRD+ELWK+
Sbjct: 16 KRINVQEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKSN-R 74
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L++EER ++ RNLGFF+T +SL NNIVL ++ +T E RQYLLRQA+EEA+HTHA+ Y
Sbjct: 75 LSDEERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFLY 134
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
IVESLGLDE E+FN YHE+ SI +KD+F + + + F T + +N QK +K+L+ F
Sbjct: 135 IVESLGLDEREVFNMYHEVNSISNKDQFEMALTEDILRSDFNTESVENIQKFVKNLVGFY 194
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKM G E +QYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 195 VIMEGIFFYSGFVMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKEENPEIW 254
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T +F KEIE + +A+ LEY YA+D +P+GILGLN FK Y+ +IA+ R+++IG K +
Sbjct: 255 TVDFQKEIEAMIDQAVLLEYAYAKDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAKY 314
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+NPFPWMSE++ + KE NFFETRV EYQSG L+W
Sbjct: 315 G-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 351
>gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum Nigg]
gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum Nigg]
gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum Weiss]
gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum MopnTet14]
gi|14195147|sp|Q9PL92.1|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia
muridarum Nigg]
Length = 346
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/338 (55%), Positives = 252/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI+M +DIELWK+ +
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELWKSNV- 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E SI+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKM+G E YQYILRDE++H NFG+DLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
TTE +EI ++ +A++LE YA D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346
>gi|406593722|ref|YP_006740901.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci NJ1]
gi|405789594|gb|AFS28336.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci NJ1]
Length = 346
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/351 (55%), Positives = 249/351 (70%), Gaps = 11/351 (3%)
Query: 5 LNNKKKTLKINSFERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
L K K +++NS K+++N DVNQLVP KY WAW+ YL+ CAN+W+P E+
Sbjct: 6 LEGKSKRVQLNS--------KRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVP 57
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M RDIELWK+ L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQ
Sbjct: 58 MARDIELWKSD-NLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQ 116
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
AFEEA+HTH + YI ESLGLDE E+FNAY+E +IR KD+F + + D F T + +
Sbjct: 117 AFEEAVHTHTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLE 176
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
+ +K+L+ + IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGID
Sbjct: 177 GLSQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGID 236
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
LIN IK ENP +WT E EI L KA++LE YA D +P+GILGL F Y+R IA
Sbjct: 237 LINGIKEENPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIA 296
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ R+++IG+K I+ + +NPFPWMSE I + KE NFFETRVMEYQ+ +L W
Sbjct: 297 DRRLERIGLKPIY-HSKNPFPWMSETIDLNKEKNFFETRVMEYQTSASLSW 346
>gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae TW-183]
gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae
TW-183]
Length = 365
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/340 (57%), Positives = 248/340 (72%), Gaps = 5/340 (1%)
Query: 17 FERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
+R+ K ++N DVNQLVP KY WAW+ YL+ CAN+W+P E+ M RDIELWK+
Sbjct: 29 LKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKSD- 87
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQAFEEA+HTH +
Sbjct: 88 ELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFL 147
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIV 194
YI ESLGLDE E+FNAY+E SIR KD+F + +DVL D F +++ + +K+L+
Sbjct: 148 YICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVL-DPNFSVQSSEGLGQFIKNLVG 206
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGIDLIN IK ENP
Sbjct: 207 YYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPE 266
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
+WTTE +EI L KA+ELE YA+D +P+GILGL F Y+R IA+ R+++IG+K
Sbjct: 267 VWTTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKP 326
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
I+ + RNPFPWMSE + + KE NFFETRV EYQ+ G L W
Sbjct: 327 IY-HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 365
>gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/338 (56%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH Y Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTYLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae CWL029]
gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae J138]
gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae AR39]
gi|384449830|ref|YP_005662432.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila
pneumoniae LPCoLN]
gi|14195165|sp|Q9Z6S4.1|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae
CWL029]
gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
pneumoniae AR39]
gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae
J138]
gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
pneumoniae LPCoLN]
Length = 346
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/340 (57%), Positives = 248/340 (72%), Gaps = 5/340 (1%)
Query: 17 FERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
+R+ K ++N DVNQLVP KY WAW+ YL+ CAN+W+P E+ M RDIELWK+
Sbjct: 10 LKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKSD- 68
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQAFEEA+HTH +
Sbjct: 69 ELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFL 128
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIV 194
YI ESLGLDE E+FNAY+E SIR KD+F + +DVL D F +++ + +K+L+
Sbjct: 129 YICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVL-DPNFSVQSSEGLGQFIKNLVG 187
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGIDLIN IK ENP
Sbjct: 188 YYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPE 247
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
+WTTE +EI L KA+ELE YA+D +P+GILGL F Y+R IA+ R+++IG+K
Sbjct: 248 VWTTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKP 307
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
I+ + RNPFPWMSE + + KE NFFETRV EYQ+ G L W
Sbjct: 308 IY-HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346
>gi|375332746|pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
gi|375332747|pdb|4D8F|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
gi|375332748|pdb|4D8F|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
gi|375332749|pdb|4D8F|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
gi|375332750|pdb|4D8G|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
gi|375332751|pdb|4D8G|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
gi|375332752|pdb|4D8G|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
gi|375332753|pdb|4D8G|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
Length = 366
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 31 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 89
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 90 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 149
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 150 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 209
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 210 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 269
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 270 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 329
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 330 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 366
>gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis A/HAR-13]
gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis B/Jali20/OT]
gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis B/TZ1A828/OT]
gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 70]
gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 70s]
gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis D(s)2923]
gi|376282840|ref|YP_005156666.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis A2497]
gi|385242233|ref|YP_005810073.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/11023]
gi|385245843|ref|YP_005814666.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/150]
gi|385270572|ref|YP_005813732.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis A2497]
gi|386263186|ref|YP_005816465.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis Sweden2]
gi|389858525|ref|YP_006360767.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis F/SW4]
gi|389859401|ref|YP_006361642.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis E/SW3]
gi|389860277|ref|YP_006362517.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis F/SW5]
gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis A/HAR-13]
gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis B/Jali20/OT]
gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis Sweden2]
gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/150]
gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/11023]
gi|347975712|gb|AEP35733.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis A2497]
gi|371908870|emb|CAX09503.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis A2497]
gi|380249597|emb|CCE14894.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis F/SW5]
gi|380250472|emb|CCE14005.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis F/SW4]
gi|380251350|emb|CCE13116.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis E/SW3]
gi|438690768|emb|CCP50025.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis A/7249]
gi|438691853|emb|CCP49127.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis A/5291]
gi|438693226|emb|CCP48228.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis A/363]
gi|440527543|emb|CCP53027.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis D/SotonD1]
gi|440530216|emb|CCP55700.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/SotonE4]
gi|440531113|emb|CCP56597.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/SotonE8]
gi|440532007|emb|CCP57517.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis F/SotonF3]
gi|440535583|emb|CCP61093.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/Bour]
Length = 346
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPGIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>gi|338733552|ref|YP_004672025.1| ribonucleoside-diphosphate reductase subunit beta [Simkania
negevensis Z]
gi|336482935|emb|CCB89534.1| ribonucleoside-diphosphate reductase subunit beta [Simkania
negevensis Z]
Length = 353
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/344 (56%), Positives = 243/344 (70%), Gaps = 3/344 (0%)
Query: 12 LKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIEL 70
+K +R K++IN T DVNQL+P KY WAW+ YL+ CANHWMP E+ M +DIEL
Sbjct: 12 IKDGEAKRAKANEKRLINCTTVDVNQLMPLKYKWAWEHYLNGCANHWMPTEVPMAKDIEL 71
Query: 71 WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 130
WK+ L+E ER ++ RNLGFFSTA+SL ANNIVL Y+ +T PECRQYLLRQAFEEAIH
Sbjct: 72 WKSK-NLSEAERLVIMRNLGFFSTAESLVANNIVLSIYKFVTNPECRQYLLRQAFEEAIH 130
Query: 131 THAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190
TH + YIVESL LDE +FN Y+EI SI KD F + + L D + T QK L+
Sbjct: 131 THTFHYIVESLNLDEGRVFNMYNEINSIHAKDAFEMKLTEDLLDESYTTSTQAGAQKFLE 190
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
+LI + IMEG+FFY GF IL+L RQNKM+G E +QYILRDE++H NFGIDLIN IK
Sbjct: 191 NLIGYYIIMEGIFFYSGFAMILSLHRQNKMVGIGEQFQYILRDETVHLNFGIDLINGIKE 250
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
ENP LW+ +F K I +A+ELE YA+D +P+GILGL F+ Y ++IA+ R+++I
Sbjct: 251 ENPGLWSPQFQKYITDKIKEAVELEVQYAQDCLPQGILGLTAPMFREYAQYIADRRLERI 310
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
G++ + RNPFPWMSE I + KE NFFETRV EYQS +L W
Sbjct: 311 GLQPQYK-SRNPFPWMSETIDLGKEKNFFETRVTEYQSSASLSW 353
>gi|392376932|ref|YP_004064710.1| putative ibonucleoside reductase small subunit [Chlamydophila
psittaci RD1]
gi|407459592|ref|YP_006737695.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci M56]
gi|410858715|ref|YP_006974655.1| putative ibonucleoside reductase small subunit [Chlamydia psittaci
01DC12]
gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila
psittaci RD1]
gi|405785910|gb|AFS24655.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci M56]
gi|410811610|emb|CCO02263.1| putative ibonucleoside reductase small subunit [Chlamydia psittaci
01DC12]
Length = 349
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/351 (54%), Positives = 248/351 (70%), Gaps = 11/351 (3%)
Query: 5 LNNKKKTLKINSFERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
L K K +++NS K+++N DVNQLVP KY WAW+ YL+ CAN+W+P E+
Sbjct: 9 LEGKSKRVQLNS--------KRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVP 60
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M RDIELWK+ L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQ
Sbjct: 61 MARDIELWKSN-NLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQ 119
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
AFEEA+HTH + YI ESLGLDE E+FNAY+E +IR KD+F + + D F T + +
Sbjct: 120 AFEEAVHTHTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLE 179
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
+ +K+L+ + IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGID
Sbjct: 180 GLSQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGID 239
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
LIN IK ENP +WT E EI L KA++LE YA D +P+GILGL F Y+R IA
Sbjct: 240 LINGIKEENPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIA 299
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ R+++IG+K I+ + +NPFPWMSE I + KE NFFETRV+EYQ+ L W
Sbjct: 300 DRRLERIGLKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349
>gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis D/UW-3/CX]
gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 6276]
gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 6276s]
gi|385240378|ref|YP_005808220.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/9768]
gi|385241306|ref|YP_005809147.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/11222]
gi|385243155|ref|YP_005810994.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/9301]
gi|385244034|ref|YP_005811880.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis D-EC]
gi|385244914|ref|YP_005812758.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydia
trachomatis D-LC]
gi|385246763|ref|YP_005815585.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/11074]
gi|14195107|sp|O84835.1|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis
D/UW-3/CX]
gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/9768]
gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/11222]
gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/11074]
gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/9301]
gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis D-EC]
gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis D-LC]
gi|440525758|emb|CCP51009.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis K/SotonK1]
gi|440528434|emb|CCP53918.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis D/SotonD5]
gi|440529325|emb|CCP54809.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis D/SotonD6]
gi|440532899|emb|CCP58409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/SotonG1]
gi|440533793|emb|CCP59303.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis Ia/SotonIa1]
gi|440534687|emb|CCP60197.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis Ia/SotonIa3]
Length = 346
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila
psittaci Cal10]
gi|332287701|ref|YP_004422602.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
gi|384450859|ref|YP_005663459.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila
psittaci 6BC]
gi|384451854|ref|YP_005664452.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
01DC11]
gi|384452828|ref|YP_005665425.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
08DC60]
gi|384453807|ref|YP_005666403.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
C19/98]
gi|384454786|ref|YP_005667381.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
02DC15]
gi|406592663|ref|YP_006739843.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci CP3]
gi|406594325|ref|YP_006741939.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci MN]
gi|407454334|ref|YP_006733442.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci 84/55]
gi|407455606|ref|YP_006734497.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci GR9]
gi|407457023|ref|YP_006735596.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci VS225]
gi|407458344|ref|YP_006736649.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci WS/RT/E30]
gi|407460963|ref|YP_006738738.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci WC]
gi|449071420|ref|YP_007438500.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
psittaci Mat116]
gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila
psittaci Cal10]
gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
psittaci 6BC]
gi|334692588|gb|AEG85807.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
C19/98]
gi|334693564|gb|AEG86782.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
01DC11]
gi|334694543|gb|AEG87760.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
02DC15]
gi|334695517|gb|AEG88733.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci
08DC60]
gi|405781093|gb|AFS19843.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci 84/55]
gi|405782149|gb|AFS20898.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci GR9]
gi|405782757|gb|AFS21505.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci MN]
gi|405784284|gb|AFS23031.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci VS225]
gi|405784592|gb|AFS23338.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci WS/RT/E30]
gi|405787484|gb|AFS26228.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci WC]
gi|405788535|gb|AFS27278.1| ribonucleotide reductase, small chain family protein [Chlamydia
psittaci CP3]
gi|449039928|gb|AGE75352.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
psittaci Mat116]
Length = 346
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/351 (54%), Positives = 248/351 (70%), Gaps = 11/351 (3%)
Query: 5 LNNKKKTLKINSFERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
L K K +++NS K+++N DVNQLVP KY WAW+ YL+ CAN+W+P E+
Sbjct: 6 LEGKSKRVQLNS--------KRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVP 57
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M RDIELWK+ L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQ
Sbjct: 58 MARDIELWKSN-NLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQ 116
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
AFEEA+HTH + YI ESLGLDE E+FNAY+E +IR KD+F + + D F T + +
Sbjct: 117 AFEEAVHTHTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLE 176
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
+ +K+L+ + IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGID
Sbjct: 177 GLSQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGID 236
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
LIN IK ENP +WT E EI L KA++LE YA D +P+GILGL F Y+R IA
Sbjct: 237 LINGIKEENPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIA 296
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ R+++IG+K I+ + +NPFPWMSE I + KE NFFETRV+EYQ+ L W
Sbjct: 297 DRRLERIGLKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 346
>gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta
[Methylacidiphilum infernorum V4]
gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum
infernorum V4]
Length = 361
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/338 (55%), Positives = 248/338 (73%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+RIN K++IN DVNQL+P KY WAW+ YL+ CAN+W+P E+ MQRD+ELWK+
Sbjct: 26 KRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKSN-R 84
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+ +ER ++ RNLGFF+T +SL NNIVL ++ +T E RQYLLRQA+EEA+HTHA+ Y
Sbjct: 85 LSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFLY 144
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
IVESLGLDE E+FN YHE+ SI +KD+F + + + F T + +N QK +K+L+ F
Sbjct: 145 IVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGFY 204
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GF IL+ RQNKM G E +QYILRDE++H NFGIDLIN I+ ENP +W
Sbjct: 205 VIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIREENPEIW 264
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T F KEIE++ +++ LEY YA D +P+GILGLN FK Y+ +IA+ R+++IG K +
Sbjct: 265 TAGFQKEIEEMIDESVRLEYAYARDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAKY 324
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+NPFPWMSE++ + KE NFFETRV EYQSG L+W
Sbjct: 325 G-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 361
>gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 434/Bu]
gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2tet1]
gi|339625586|ref|YP_004717065.1| ribonucleotide-diphosphate reductase small chain [Chlamydia
trachomatis L2c]
gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis 434/Bu]
gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|339460654|gb|AEJ77157.1| ribonucleotide-diphosphate reductase small chain [Chlamydia
trachomatis L2c]
gi|440526647|emb|CCP52131.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/8200/07]
gi|440536471|emb|CCP61984.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/795]
gi|440537364|emb|CCP62878.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L1/440/LN]
gi|440538253|emb|CCP63767.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L1/1322/p2]
gi|440539143|emb|CCP64657.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L1/115]
gi|440540033|emb|CCP65547.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L1/224]
gi|440540923|emb|CCP66437.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2/25667R]
gi|440541811|emb|CCP67325.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L3/404/LN]
gi|440542700|emb|CCP68214.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/UCH-2]
gi|440543591|emb|CCP69105.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/Canada2]
gi|440544482|emb|CCP69996.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/LST]
gi|440545372|emb|CCP70886.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/Ams1]
gi|440546262|emb|CCP71776.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/CV204]
gi|440914524|emb|CCP90941.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/Ams2]
gi|440915414|emb|CCP91831.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/Ams3]
gi|440916306|emb|CCP92723.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/Canada1]
gi|440917199|emb|CCP93616.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/Ams4]
gi|440918090|emb|CCP94507.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/Ams5]
Length = 346
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 250/338 (73%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346
>gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
abortus S26/3]
gi|424825397|ref|ZP_18250384.1| putative ribonucleotide-diphosphate reductase, beta subunit
[Chlamydophila abortus LLG]
gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila
abortus S26/3]
gi|333410496|gb|EGK69483.1| putative ribonucleotide-diphosphate reductase, beta subunit
[Chlamydophila abortus LLG]
Length = 349
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 247/351 (70%), Gaps = 11/351 (3%)
Query: 5 LNNKKKTLKINSFERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
L K K +++NS K+++N DVNQLVP KY WAW+ Y++ CAN W+P E+
Sbjct: 9 LEGKSKRVQLNS--------KRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVP 60
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M RDIELWK+ L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQ
Sbjct: 61 MARDIELWKSN-NLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQ 119
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
AFEEA+HTH + YI ESLGLDE E+FNAY+E +IR KD+F + + D F T + +
Sbjct: 120 AFEEAVHTHTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLE 179
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
+ +K+L+ + IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGID
Sbjct: 180 GLSQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGID 239
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
LIN IK ENP +WT E EI L KA++LE YA D +P+GILGL F Y+R IA
Sbjct: 240 LINGIKEENPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIA 299
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ R+++IG+K I+ + +NPFPWMSE I + KE NFFETRV+EYQ+ L W
Sbjct: 300 DRRLERIGLKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349
>gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
caviae GPIC]
gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
caviae GPIC]
Length = 346
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/352 (55%), Positives = 252/352 (71%), Gaps = 13/352 (3%)
Query: 5 LNNKKKTLKINSFERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
L K K +++NS K+++N DVNQLVP KY WAW+ YL+ CAN+W+P E+
Sbjct: 6 LGGKSKRVQLNS--------KRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVP 57
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M RDIELWK+ L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQ
Sbjct: 58 MARDIELWKSN-DLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQ 116
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPF-IDVLTDLKFKTGNT 182
AFEEA+HTH + YI ESLGLDE E+FNAY+E +I+ KD+F + +DVL F T +
Sbjct: 117 AFEEAVHTHTFLYICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNP-NFSTDSV 175
Query: 183 KNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGI 242
+ ++ +K+L+ + IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGI
Sbjct: 176 EGLRQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGI 235
Query: 243 DLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFI 302
DLIN IK ENP +W+ E EI L KA++LE YA+D +P+GILGL F Y+R I
Sbjct: 236 DLINGIKEENPEVWSQELQDEIIALIQKAVDLEIEYAKDCLPRGILGLKSSMFIDYVRHI 295
Query: 303 ANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
A+ R+++IG+K I+ Y +NPFPWMSE I + KE NFFETRV EYQ+ G L W
Sbjct: 296 ADRRLERIGLKPIY-YSKNPFPWMSETIDLNKEKNFFETRVTEYQTSGNLSW 346
>gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila
pecorum E58]
gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
pecorum E58]
Length = 346
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 249/340 (73%), Gaps = 5/340 (1%)
Query: 17 FERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
+R++ NK+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI+M RDIELWK+
Sbjct: 10 LKRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKSN- 68
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GL+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQAFEEA+HT +
Sbjct: 69 GLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFL 128
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIV 194
YI ESL LDE E+FNAY+E +SI+ KD+F + +DVL D F T + + +K +K+L+
Sbjct: 129 YICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVL-DPNFSTDSIEGLRKFIKNLVG 187
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGIDLIN IK ENP
Sbjct: 188 YYLIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPE 247
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
+W+ E +EI L A+ LE YA+D +PKGILGL F Y+R IA+ R+++IG+K
Sbjct: 248 VWSKELQEEIIALIETAVGLEIDYAKDCLPKGILGLKSSMFIDYVRHIADRRLERIGLKP 307
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
I+ +NPFPWMSE + + KE NFFETRV EYQ+ +L W
Sbjct: 308 IYN-SKNPFPWMSETMDLNKEKNFFETRVTEYQTAASLSW 346
>gi|406834441|ref|ZP_11094035.1| ribonucleotide-diphosphate reductase subunit beta [Schlesneria
paludicola DSM 18645]
Length = 356
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/338 (54%), Positives = 241/338 (71%), Gaps = 3/338 (0%)
Query: 19 RINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
R++ K++IN H DVNQL+P KY WAW+ YL+ CAN WMP E+ M +DIE WK+ L
Sbjct: 21 RVSAREKRLINCHQVDVNQLMPLKYQWAWEHYLNGCANQWMPTEVPMHKDIETWKSS-KL 79
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+++ERR++ RNLGFF+TA+SL NN+VL +RH+T ECRQYLLRQAFEEA+H+H + YI
Sbjct: 80 SDDERRVILRNLGFFATAESLVGNNLVLAIFRHVTNAECRQYLLRQAFEEAVHSHTFLYI 139
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGL+E E+FN YHE+ +I KD + + D F T + Q LK+LI +
Sbjct: 140 VESLGLNEGEVFNMYHEVPAIARKDALEMELTAEILDEGFSTDTFEGAQTFLKNLIGYFL 199
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEG+FFY GFV +L+ R+N M G E +QYILRDE++H NFGIDLIN I+ ENP LWT
Sbjct: 200 IMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETIHLNFGIDLINGIRSENPELWT 259
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF + + + A+ELE YA D +P+GILGLN + F+ Y++FIA+ R+++IG+ +
Sbjct: 260 DEFQQAMIERVKHAVELEIEYARDVLPRGILGLNAELFRDYVQFIADRRLERIGLPTQYG 319
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE I + KE NFFETRV EYQS TL+WE
Sbjct: 320 -SSNPFPWMSETIDLSKEKNFFETRVTEYQSASTLNWE 356
>gi|390562552|ref|ZP_10244748.1| Ribonucleoside-diphosphate reductase subunit beta [Nitrolancetus
hollandicus Lb]
gi|390172868|emb|CCF84058.1| Ribonucleoside-diphosphate reductase subunit beta [Nitrolancetus
hollandicus Lb]
Length = 347
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/336 (54%), Positives = 240/336 (71%), Gaps = 3/336 (0%)
Query: 21 NKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
N K++IN T DVNQL+P KY+WAW+ YL+ C+NHWMP E+ M RDIE WK L+
Sbjct: 14 NPAEKRLINCETVDVNQLMPLKYHWAWEHYLNGCSNHWMPNEVPMARDIEAWKGN-RLSP 72
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
+ER+++ RNLGFF+TA+SL ANNI L +R++T ECRQYLLRQAFEEA+HTHA+ YIVE
Sbjct: 73 DERQVIMRNLGFFATAESLVANNITLAIFRNVTNAECRQYLLRQAFEEALHTHAFHYIVE 132
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
SLGLDE E+FN Y E+ +I KD F + L F T + Q+ L++LI + IM
Sbjct: 133 SLGLDEQEVFNMYREVDAIAAKDAFEMQLTADLLRPDFTTKTFEGSQRFLENLIGYYVIM 192
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG+FFY GF IL+ RQN+M G EL+QYILRDE++H NFGIDLIN IK ENP +WT +
Sbjct: 193 EGIFFYAGFAMILSFHRQNRMTGIGELFQYILRDETVHLNFGIDLINGIKAENPGIWTAD 252
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
F + A+ELE YA D +P G+LGLN F+ Y+++IA+ R+++IG+ + + +
Sbjct: 253 FRDTLVGRIRHAVELEIAYARDCLPSGVLGLNANLFRDYVQYIADRRLERIGLPRQY-HS 311
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
RNPFPWMSE I + KE NFFE+RV EY+SG TL WE
Sbjct: 312 RNPFPWMSETIDLGKEKNFFESRVTEYRSGATLIWE 347
>gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon
aurantiacus DSM 785]
gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus DSM
785]
Length = 342
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/340 (53%), Positives = 243/340 (71%), Gaps = 3/340 (0%)
Query: 17 FERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
F R N +K++IN DVNQL+P +Y WAW+ YL+ CANHWMP E++M DI +W++
Sbjct: 5 FGRFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRST- 63
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
L+ +ER +V RNLGFF+TA+SL NNIVL +RHIT ECRQYLLRQAFEEAIHTHA+
Sbjct: 64 SLSADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFL 123
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
+IVESLGL+E EIFN YHEI I KD+F + + D +F T Q +K+LI +
Sbjct: 124 HIVESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGY 183
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
IMEG+FFY GF +L+L R+N + G E QYILRDE++H NFG+DLIN IK ENP +
Sbjct: 184 YVIMEGIFFYSGFAMLLSLHRRNVLTGIGEQIQYILRDETIHLNFGVDLINGIKAENPAI 243
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
WT EF EI QL +++ELE YA + +P+G++GL+ F+ Y+++IA+ R+++IG+
Sbjct: 244 WTNEFQAEIVQLIRQSVELEAQYAAECLPRGVMGLHAAMFRDYVQYIADRRLQRIGLAIQ 303
Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ +NPFPWMSE I + KE NFFETRV EYQS +L+W+
Sbjct: 304 YG-SQNPFPWMSETIDLTKEKNFFETRVTEYQSAASLEWD 342
>gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
felis Fe/C-56]
gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila
felis Fe/C-56]
Length = 349
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 248/351 (70%), Gaps = 11/351 (3%)
Query: 5 LNNKKKTLKINSFERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
L K K +++NS K+++N DVNQLVP KY WAW+ YL+ CAN+W+P E+
Sbjct: 9 LEGKSKRVQLNS--------KRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVP 60
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M RDI+LWK+ L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQ
Sbjct: 61 MARDIDLWKSN-ELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQ 119
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
AFEEA+HTH + YI ESLGLDE E+FNAY+E +I+ KD+F + + D F T +
Sbjct: 120 AFEEAVHTHTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIE 179
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
N ++ +K+L+ + IMEG+FFY GFV IL+ RQNKM G E YQYILRDE++H NFGID
Sbjct: 180 NLRQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGID 239
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
LIN IK ENP +W+ + EI L KA++LE YA D +P+GILGL F Y+R IA
Sbjct: 240 LINGIKEENPEVWSQQLQDEIVDLIQKAVDLEIEYARDCLPRGILGLRSSMFIDYVRHIA 299
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ R+++IG+K I+ +NPFPWMSE I + KE NFFETRV EYQ+ L+W
Sbjct: 300 DRRLERIGLKPIYN-SKNPFPWMSETIDLNKEKNFFETRVTEYQTAANLNW 349
>gi|422637424|ref|ZP_16700856.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas syringae Cit 7]
gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae Cit 7]
Length = 359
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 172/281 (61%), Positives = 216/281 (76%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDA 318
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYL 299
E KE Q+ L+ +LE YA DTMP+G+LG+N + YL
Sbjct: 319 EMKKEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYL 359
>gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
BAA-798]
gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
BAA-798]
Length = 353
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/339 (54%), Positives = 242/339 (71%), Gaps = 3/339 (0%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+RI +K++IN DVNQL P KY WAW+ YL+ CANHWMP E+ M +DIELW++
Sbjct: 17 QRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELWRSN-A 75
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT +ER ++ RNLGFFST +SL NNIVL ++HIT PE RQYLLRQAFEEAIHTHA+ Y
Sbjct: 76 LTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHTHAFHY 135
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
IVESLGLD E+FN Y E+ SI+ KDEF++ + + D F T + Q +++L+ F
Sbjct: 136 IVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRNLVGFY 195
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQN+M G E +QYILRDE++H NFGIDLINTIK ENP W
Sbjct: 196 VIMEGIFFYSGFVMILSFHRQNRMTGIGEQFQYILRDETVHLNFGIDLINTIKEENPEAW 255
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +++ + +A+E E YA + +P G+LGLN F+ Y+++IA+ R+++I + +
Sbjct: 256 TEELRRDLVGMIRQAVEYEIAYARECLPNGVLGLNADLFREYVQYIADRRLERIELPVQY 315
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
RNPFPWMSE + + KE NFFETRV EYQ+ GTL W+
Sbjct: 316 -RSRNPFPWMSETMDLPKEKNFFETRVTEYQNAGTLVWD 353
>gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
Length = 357
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/332 (54%), Positives = 240/332 (72%), Gaps = 3/332 (0%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++IN T DVNQL+P KY+WAW+ Y + CANHWMP E+ M +DIE W+ LT++E+
Sbjct: 28 KRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRTG-SLTDDEKL 86
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
++ RNLGFFSTA+SL NN+VL +RH+T PECRQYLLRQAFEEAIHTH + YIVESLGL
Sbjct: 87 VILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVESLGL 146
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
D+ E+FN Y EI SI KD F + L D F T + QK L++LI + IMEG+F
Sbjct: 147 DDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYYLIMEGIF 206
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GFV IL+ RQN+M G E +QYILRDE++H NFGIDLIN ++ ENP +WT +F +
Sbjct: 207 FYTGFVMILSFHRQNRMTGIGEQFQYILRDETIHLNFGIDLINGVRAENPGIWTADFQER 266
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
+ +L +A+ELE YA D +P+GI+GLN + F+ Y++ IA+ R+++IG+ + NPF
Sbjct: 267 VIKLVREAVELEVAYAWDCLPRGIVGLNGELFRDYVQHIADRRLERIGLPTQYG-SANPF 325
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PWMSE + + KE NFFETRV EYQS +L W+
Sbjct: 326 PWMSETMDLGKEKNFFETRVTEYQSAASLAWD 357
>gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
Length = 353
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/338 (53%), Positives = 241/338 (71%), Gaps = 3/338 (0%)
Query: 19 RINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
R K++IN DVNQL+P KY WAW+ YL+ CANHWMP E+ M +DIE+WK+ L
Sbjct: 18 RFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVWKSN-KL 76
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+++ER ++ RNLGFFSTA+SL NN+VL ++H+T ECRQYLLRQAFEEA+HTH + Y+
Sbjct: 77 SDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHTHTFLYV 136
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
V+SLGL E E+FN YHE+ +I KDEF + + F T + Q L++LI +
Sbjct: 137 VDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRNLIGYYL 196
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEG+FFY GFV IL+ R+N + G E +QYILRDE+ H NFGIDLIN IK ENP++WT
Sbjct: 197 IMEGIFFYTGFVMILSFHRRNLLTGIGEQFQYILRDETTHLNFGIDLINGIKHENPDIWT 256
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
+F +EI L +A+ELE YA D +P+G+LGLN F+ Y++ IA+ R+++IG+ ++
Sbjct: 257 EKFQQEIIDLVKEAVELEIDYARDCLPRGVLGLNGNLFRDYVQHIADRRLERIGLPTLYN 316
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + + KE NFFETRV EYQ+GGTL W+
Sbjct: 317 -SSNPFPWMSETMDLAKEKNFFETRVTEYQTGGTLSWD 353
>gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
chondrophila WSU 86-1044]
gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
chondrophila WSU 86-1044]
gi|337294072|emb|CCB92057.1| Ribonucleoside-diphosphate reductase subunit beta [Waddlia
chondrophila 2032/99]
Length = 344
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/338 (53%), Positives = 241/338 (71%), Gaps = 5/338 (1%)
Query: 19 RINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
R K++IN DVNQL+P KY WAW+ YL+ CANHWMP E+ M +DIE WK+ +
Sbjct: 11 RFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKSD-SI 69
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+E+ER L+KRNLGFF+TA+SL ANN+VL ++H+T ECRQYLLRQAFEEA+H+HA+ YI
Sbjct: 70 SEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFLYI 129
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
V+SLGL+E EIFN Y EI +I +KDEF + L D + KT K Q+ LK+L+ +
Sbjct: 130 VDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDGETKTLAGK--QQFLKNLVGYYI 187
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEG+FFY GF +L+L R+N M G E +QYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 188 IMEGIFFYSGFAMVLSLHRRNIMPGIGEQFQYILRDETIHLNFGIDLINGIKAENPEIWN 247
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
+ EI L +A+ELE YA++ +P G+LGLN F Y++++A+ R+++IG+ I+
Sbjct: 248 EDLTDEINGLVQQAVELEIAYAKECLPHGVLGLNAGLFVEYVQYVADRRLERIGLSAIYK 307
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + + KE NFFETRV EYQS L W+
Sbjct: 308 -SSNPFPWMSETMDLTKEKNFFETRVTEYQSAAVLSWD 344
>gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
maris DSM 8797]
gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
maris DSM 8797]
Length = 359
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/338 (54%), Positives = 239/338 (70%), Gaps = 3/338 (0%)
Query: 19 RINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
R K++IN DVNQL+P KY+WAW+ YL+ CANHWMP E+ M +DIE W++ L
Sbjct: 24 RFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMPTEVGMTKDIETWRSS-KL 82
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+E ER ++ RNLGFF+TA+SL ANNIVL ++H+T ECRQYLLRQAFEEA+H+H + YI
Sbjct: 83 SEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQYLLRQAFEEAVHSHTFLYI 142
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
VESLGL+E E+FN YHE+ +I KD+ + + D F T + Q LK+LI +
Sbjct: 143 VESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTTDTFEGAQAFLKNLIGYYL 202
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEGLFFY GFV +L+ R+N M G E +QYILRDE++H NFGIDLIN IK ENP+LWT
Sbjct: 203 IMEGLFFYTGFVMVLSFHRRNMMTGIGEQFQYILRDETIHLNFGIDLINGIKQENPDLWT 262
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
EF + I A ELE YA+D +P GILGLN + F+ Y++ IA+ R+++IG+ +
Sbjct: 263 PEFQQLIIDRMKYAAELEIEYAKDCLPTGILGLNGELFREYVQHIADRRLERIGLPAQYG 322
Query: 318 YERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NPFPWMSE + + KE NFFETRV EYQS G+L+W+
Sbjct: 323 -SANPFPWMSETMDLSKEKNFFETRVTEYQSSGSLNWD 359
>gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 350
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/331 (54%), Positives = 235/331 (70%), Gaps = 3/331 (0%)
Query: 25 KQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K+I+N DVNQL+P KY+WAW+ YL+ C N+WMP E+ MQ+DIELWK+ L+ +ER
Sbjct: 22 KRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKSN-RLSNDERL 80
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
++ RNLGFFSTA+SL NNIVL ++H+T E RQYLLRQAFEEA+HTH + YIVESL L
Sbjct: 81 VIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTFHYIVESLSL 140
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
D+ E+F+ Y+ + SI KD F + + + F T + Q LK+LI F IMEG+F
Sbjct: 141 DQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTPEGVQTFLKNLIGFYIIMEGIF 200
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GFV IL+ R+N M G E +QYILRDES+H NFGIDLINTIK ENP +WT EF +
Sbjct: 201 FYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGIDLINTIKEENPEVWTPEFKDQ 260
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
I + +A+ELE YA D +P GILGLN F+ Y+ +IA+ R+++IG+K + NPF
Sbjct: 261 IIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYIADRRLERIGLKPQYN-TANPF 319
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
PWMSE++ + KE NFFETRV +YQSG L W
Sbjct: 320 PWMSEVMDLDKEKNFFETRVTQYQSGAALVW 350
>gi|338174005|ref|YP_004650815.1| ribonucleoside-diphosphate reductase subunit beta [Parachlamydia
acanthamoebae UV-7]
gi|336478363|emb|CCB84961.1| ribonucleoside-diphosphate reductase subunit beta [Parachlamydia
acanthamoebae UV-7]
Length = 345
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/331 (54%), Positives = 235/331 (70%), Gaps = 3/331 (0%)
Query: 25 KQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K+I+N DVNQL+P KY+WAW+ YL+ C N+WMP E+ MQ+DIELWK+ L+ +ER
Sbjct: 17 KRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKSN-RLSNDERL 75
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
++ RNLGFFSTA+SL NNIVL ++H+T E RQYLLRQAFEEA+HTH + YIVESL L
Sbjct: 76 VIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTFHYIVESLSL 135
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
D+ E+F+ Y+ + SI KD F + + + F T + Q LK+LI F IMEG+F
Sbjct: 136 DQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTPEGVQTFLKNLIGFYIIMEGIF 195
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GFV IL+ R+N M G E +QYILRDES+H NFGIDLINTIK ENP +WT EF +
Sbjct: 196 FYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGIDLINTIKEENPEVWTPEFKDQ 255
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
I + +A+ELE YA D +P GILGLN F+ Y+ +IA+ R+++IG+K + NPF
Sbjct: 256 IIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYIADRRLERIGLKPQYN-TANPF 314
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
PWMSE++ + KE NFFETRV +YQSG L W
Sbjct: 315 PWMSEVMDLDKEKNFFETRVTQYQSGAALVW 345
>gi|406908160|gb|EKD48753.1| hypothetical protein ACD_64C00150G0007 [uncultured bacterium]
Length = 334
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 230/329 (69%), Gaps = 1/329 (0%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
I N D N+++P +Y WA Y AN+W P+EI+MQ+D+E WK+ L+ ERR++
Sbjct: 7 INNSMVDPNKILPMRYMWARHHYKDGVANNWTPEEISMQKDVEQWKSATALSATERRMIL 66
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
NLGFFSTA+SL ANN+VL Y+H+T PECRQY+LRQA+EEA+HT + Y +SLGLD
Sbjct: 67 WNLGFFSTAESLTANNLVLSVYQHVTNPECRQYILRQAYEEAVHTDTFIYCCDSLGLDPS 126
Query: 147 EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYV 206
EI++ Y I SI++KD+F++ + D FKT T+N QK L LI F IMEG+FFY
Sbjct: 127 EIYSMYETIPSIKEKDDFVVNLTKSILDPSFKTDTTENIQKFLHDLIGFYVIMEGIFFYA 186
Query: 207 GFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ 266
GF +LAL RQNKMIG E ++YI+RDES+H FG DLINTIK ENP +WT +F + +
Sbjct: 187 GFAMMLALKRQNKMIGIGEQFEYIMRDESLHLAFGCDLINTIKAENPEVWTEQFQANMVE 246
Query: 267 LFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWM 326
L +++ELE YA D P+G+LG+N + F Y+ +IA+ R+++I + + + NPFPWM
Sbjct: 247 LIKQSVELEKKYAFDACPEGVLGINPQQFSDYVEYIADRRLERIDLPKQYG-RANPFPWM 305
Query: 327 SEMIHIKKESNFFETRVMEYQSGGTLDWE 355
S+ + KE NFFETRV EYQ+ G+LDWE
Sbjct: 306 SQSTDLAKEKNFFETRVTEYQTAGSLDWE 334
>gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
jeotgali B3]
gi|448297696|ref|ZP_21487739.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
jeotgali B3]
gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
jeotgali B3]
gi|445578566|gb|ELY32969.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
jeotgali B3]
Length = 330
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 157/324 (48%), Positives = 223/324 (68%), Gaps = 2/324 (0%)
Query: 31 HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLG 90
H D N+++P Y+WA + Y + AN+W P+E+ M D+ W+N L+ EER+LV+ NLG
Sbjct: 9 HHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWEND-ELSSEERQLVEWNLG 67
Query: 91 FFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFN 150
FFSTA+SL ANNIVL Y H+TAPECRQYLLRQA+EEAIHT + Y +SLG D ++
Sbjct: 68 FFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYLYG 127
Query: 151 AYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQ 210
Y I +I KDEF++ V+ D F+ + ++ ++ L+ L+ F IMEG+FFY GF
Sbjct: 128 MYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFYVIMEGIFFYAGFAM 187
Query: 211 ILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270
+L L RQ KM+G E ++YI+RDES+H NFG+DLINT++ EN +WT F EIE L +
Sbjct: 188 MLGLKRQGKMVGVGEQFEYIMRDESLHLNFGVDLINTVREENSGIWTDVFEAEIEGLLRE 247
Query: 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMI 330
A+ELE YA + P+ +LG+ F Y+ ++A+ R+ Q+G++ ++ + NPFPWM+E +
Sbjct: 248 AVELERTYAREACPEEVLGMGPAQFAEYVEYVADRRLDQLGMEPVYDTD-NPFPWMAEQV 306
Query: 331 HIKKESNFFETRVMEYQSGGTLDW 354
+ KE NFFET V EYQSGG+L+W
Sbjct: 307 DLNKEKNFFETNVAEYQSGGSLEW 330
>gi|448457855|ref|ZP_21595860.1| ribonucleotide-diphosphate reductase subunit beta [Halorubrum
lipolyticum DSM 21995]
gi|445810156|gb|EMA60187.1| ribonucleotide-diphosphate reductase subunit beta [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 229/326 (70%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P +Y+WA + Y + N+W+P+E+ M D+ W+N LTE ER+LV+ N
Sbjct: 7 DSQHDPNKILPIQYDWAREYYRNGVNNNWVPEEVPMADDVHQWEND-ELTEAERQLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANN+VL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG + +
Sbjct: 66 LGFFSTAESLTANNLVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYL 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I +I+ KDEF++ + D F ++ ++LL+ L+ F IMEG+FFY GF
Sbjct: 126 YGMYDRIPAIQRKDEFVVDLTRSIDDPSFTVETDEDVRELLRDLVGFYVIMEGIFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+LAL R+ KM+G E ++YI+RDES+H NFG+DLINTI+ ENP +WT EF EI++L
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINTIREENPGVWTAEFEAEIDELI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A+ELE YAE+ P ++G++ + F Y+ ++A+ R+ Q+G+ + F E NPFPWMSE
Sbjct: 246 REAVELESTYAEEACPPDLMGMSAEGFVEYVEYVADRRLTQLGMDERFGTE-NPFPWMSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + +E+NFFE +V EYQSGG+LDW
Sbjct: 305 AVDLNREANFFERQVTEYQSGGSLDW 330
>gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
DSM 11551]
gi|448286417|ref|ZP_21477647.1| ribonucleotide-diphosphate reductase subunit beta [Halogeometricum
borinquense DSM 11551]
gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
DSM 11551]
gi|445574689|gb|ELY29183.1| ribonucleotide-diphosphate reductase subunit beta [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/330 (48%), Positives = 223/330 (67%), Gaps = 4/330 (1%)
Query: 27 IINGHT--DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
I+N T D N+++P Y+WA Y AN+W+P+EI MQ DI W N L++ E++L
Sbjct: 3 ILNNDTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQW-NGDALSDSEKQL 61
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
V+ NLGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D
Sbjct: 62 VEWNLGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
++ Y + SI++KDEF++ L D F +T + + LL+ L+ F +MEG+FF
Sbjct: 122 PEYMYGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFYVVMEGVFF 181
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y GF +LAL RQNKM+G + ++YI+RDES+H FG+DLIN I+ ENP+ WT EF E+
Sbjct: 182 YAGFAMMLALKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRAENPDAWTDEFGAEV 241
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFP 324
L KA++LE YA + P +LG++ F Y+ +A+ R+ Q+ + + + NPFP
Sbjct: 242 RDLIEKAVDLEQIYAREACPDDVLGMSPDQFAEYVEHVADRRLGQLDLDASYGTD-NPFP 300
Query: 325 WMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
WMSE + + KE NFFET+V EYQSGG+LDW
Sbjct: 301 WMSEAVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|422631562|ref|ZP_16696746.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas syringae pv. pisi str. 1704B]
gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. pisi str. 1704B]
Length = 317
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 152/238 (63%), Positives = 189/238 (79%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K +IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM D LWKNP GLT
Sbjct: 79 RVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADTALWKNPEGLT 138
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 139 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 198
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++LI + C+
Sbjct: 199 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCV 258
Query: 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
+EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW
Sbjct: 259 LEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLW 316
>gi|399576280|ref|ZP_10770037.1| ribonucleotide-diphosphate reductase subunit beta [Halogranum
salarium B-1]
gi|399238991|gb|EJN59918.1| ribonucleotide-diphosphate reductase subunit beta [Halogranum
salarium B-1]
Length = 330
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 160/330 (48%), Positives = 226/330 (68%), Gaps = 4/330 (1%)
Query: 27 IINGHT--DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
IIN + D N+++P Y WA + Y AN+W+P+E+ MQ D+ W+N LT EER+L
Sbjct: 3 IINTDSQHDPNKILPIDYPWAREYYRDGVANNWVPEEVPMQDDVSQWQND-ELTPEERQL 61
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
V+ NLGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D
Sbjct: 62 VEWNLGFFSTAESLTANNIVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
++ Y + +I++KDEF++ + +F ++ + L+ L+ F +MEG+FF
Sbjct: 122 PDYLYGMYDRVPAIQEKDEFVVDLTRAIDCEEFTIETDEDVRAFLRDLVGFYVVMEGVFF 181
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y GF +LAL R+ KM+G E + YI+RDES+H NFGIDLINTI+ ENP +WT EF E+
Sbjct: 182 YAGFAMMLALKRRGKMVGVGEQFAYIMRDESLHLNFGIDLINTIREENPGVWTDEFEAEV 241
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFP 324
E L +A++LE YA P+GILG++ F Y+ ++A+ R+ Q+ + +++ + NPFP
Sbjct: 242 ESLIREAVDLEAAYARGACPEGILGMSADQFVEYVEYVADRRLHQLEMDEVYGTD-NPFP 300
Query: 325 WMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
W+SE + + KESNFFE V EYQSGG+LDW
Sbjct: 301 WLSEQVDLNKESNFFERTVTEYQSGGSLDW 330
>gi|448441672|ref|ZP_21589279.1| ribonucleotide-diphosphate reductase subunit beta [Halorubrum
saccharovorum DSM 1137]
gi|445688708|gb|ELZ40959.1| ribonucleotide-diphosphate reductase subunit beta [Halorubrum
saccharovorum DSM 1137]
Length = 330
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 158/326 (48%), Positives = 226/326 (69%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P +Y+WA + Y N+W+P+EI M D+ W++ LT+ ERRLV+ N
Sbjct: 7 DSQHDPNKILPIQYDWAREYYRDGVNNNWVPEEIPMADDVHQWESD-ELTDAERRLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANN+VL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG + +
Sbjct: 66 LGFFSTAESLTANNLVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYM 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I +I+ KDEF++ + D F + + LL+ L+ F IMEG+FFY GF
Sbjct: 126 YGMYDRIPAIQKKDEFVVDLTRSIDDPSFTVETDDDVRALLRDLVGFYVIMEGVFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+LAL R+ KM+G E ++YI+RDES+H NFGIDLINTI+ E+P +WT EF EI++L
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGIDLINTIREEHPGVWTDEFEAEIDELI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A+ELE YAE+ P ++G++ + F Y+ +IA+ R+ Q+G+ + F E NPFPWMSE
Sbjct: 246 REAVELESTYAEEACPPDLMGMSAEGFVEYVEYIADRRLTQLGMDERFGTE-NPFPWMSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + +E+NFFE +V EYQSGG+LDW
Sbjct: 305 AVDLNREANFFERQVTEYQSGGSLDW 330
>gi|448611338|ref|ZP_21661972.1| ribonucleotide-diphosphate reductase subunit beta [Haloferax
mucosum ATCC BAA-1512]
gi|445743770|gb|ELZ95251.1| ribonucleotide-diphosphate reductase subunit beta [Haloferax
mucosum ATCC BAA-1512]
Length = 330
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 156/322 (48%), Positives = 218/322 (67%), Gaps = 2/322 (0%)
Query: 33 DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFF 92
D N+++P Y+WA + Y AN+W+P+E+ M D++ WK LTE ERRLV+ NLGFF
Sbjct: 11 DPNKILPIDYDWAREYYKQGVANNWVPEEVPMGDDVQQWKTG-DLTESERRLVEWNLGFF 69
Query: 93 STADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY 152
STA+SL ANNIVL Y H+TAPECRQYLLRQA+EEAIHT + Y +SLG D ++ Y
Sbjct: 70 STAESLTANNIVLAIYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYMYGMY 129
Query: 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I +I KD++++ + + F + + L+ L+ F IMEG+FFY GF +L
Sbjct: 130 DRIPTIEAKDDYVVSLTQAIDNDDFTIETDDDLRAFLRDLVGFYVIMEGVFFYAGFAMML 189
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
AL R+ KM+G E ++YI+RDES+H NFGIDLINT++ ENP +WT EF E+ +L ++A+
Sbjct: 190 ALKRRGKMVGVGEQFEYIMRDESLHLNFGIDLINTVRDENPGVWTDEFEAEVRELIVEAV 249
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
ELE YA + P +LG++ F Y+ ++A+ R+ Q+ + F + NPFPWM+E + +
Sbjct: 250 ELERTYAREACPPDVLGMSADQFAEYVEYVADRRLGQLRMNAEFGTD-NPFPWMTEQVDL 308
Query: 333 KKESNFFETRVMEYQSGGTLDW 354
KE NFFET+V EYQSGG LDW
Sbjct: 309 NKEKNFFETQVTEYQSGGQLDW 330
>gi|448339840|ref|ZP_21528849.1| ribonucleotide-diphosphate reductase subunit beta [Natrinema
pallidum DSM 3751]
gi|445618766|gb|ELY72320.1| ribonucleotide-diphosphate reductase subunit beta [Natrinema
pallidum DSM 3751]
Length = 330
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 221/326 (67%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P Y WA + Y + N+W+P+EI MQ DI W N L++ ER+L++ N
Sbjct: 7 DAEHDPNKILPIDYGWAREYYEAGVNNNWVPEEIPMQDDITQW-NGDALSDAERQLIEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y H+TAPECRQYLLRQA+EEAIHT + Y +SLG D +
Sbjct: 66 LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYL 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y + SI++KDEF++ VL F ++ + L+ L+ F IMEGLFFY GF
Sbjct: 126 YGMYDRVPSIQEKDEFVVDLTRVLDTDGFTIETDEDRRDFLRDLVGFYVIMEGLFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L RQNKM+G + ++YI+RDES+H FGIDLIN I+ E+P+ WT EF E+ L
Sbjct: 186 AMMLGLKRQNKMVGVGQQFEYIMRDESLHLGFGIDLINQIRAEHPSAWTDEFGDEVIDLI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A+ELE YA + P G+LG++ + F Y+ IA+ R++Q+ + + + E NPFPWMSE
Sbjct: 246 TEAVELEQIYAYEACPDGLLGMSAEQFAEYVEHIADRRLEQLDLPEQYGTE-NPFPWMSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + KE NFFET+V EYQSGG+L+W
Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLEW 330
>gi|440740306|ref|ZP_20919795.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BRIP34879]
gi|440377126|gb|ELQ13779.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BRIP34879]
Length = 315
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 150/240 (62%), Positives = 189/240 (78%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK P
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKTP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
QY +ESL +DE EIFN YHEI S+ K + + + ++D KF+TG + D++LL++L+
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLVA 255
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+ C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+
Sbjct: 256 YYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPH 315
>gi|397773706|ref|YP_006541252.1| ribonucleoside-diphosphate reductase [Natrinema sp. J7-2]
gi|397682799|gb|AFO57176.1| ribonucleoside-diphosphate reductase [Natrinema sp. J7-2]
Length = 330
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 222/330 (67%), Gaps = 4/330 (1%)
Query: 27 IINGHT--DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
IIN T D N+++P Y+WA + Y + N+W+P+EI MQ DI W N L++ ER+L
Sbjct: 3 IINNDTEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDITQW-NGDALSDAERQL 61
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
V+ NLGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D
Sbjct: 62 VEWNLGFFSTAESLTANNIVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
++ Y I SI+ KDEF++ V+ F ++ + L+ L+ F IMEG+FF
Sbjct: 122 PEYLYGMYDRIPSIKQKDEFVVDLTRVINKDGFMIETDEDLRNFLRDLVGFYVIMEGIFF 181
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y GF +L L RQNKM+G + ++YI+RDES+H FG+DLIN I+ ENP +WT EF E+
Sbjct: 182 YAGFAMMLGLKRQNKMVGIGQQFEYIMRDESLHLGFGVDLINQIRTENPGVWTDEFGTEV 241
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFP 324
L +A+ELE YA + P ILG++ K F Y+ IA+ R+ Q+ + + + + NPFP
Sbjct: 242 VDLITEAVELEKIYAYEACPDDILGMSAKQFAEYVEHIADRRLGQLDLPEQYGTD-NPFP 300
Query: 325 WMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
WMSE + + KE NFFET+V EYQSGG+LDW
Sbjct: 301 WMSEQVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|448341270|ref|ZP_21530232.1| ribonucleotide-diphosphate reductase subunit beta [Natrinema gari
JCM 14663]
gi|445628317|gb|ELY81625.1| ribonucleotide-diphosphate reductase subunit beta [Natrinema gari
JCM 14663]
Length = 330
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 222/330 (67%), Gaps = 4/330 (1%)
Query: 27 IINGHT--DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
IIN T D N+++P Y+WA + Y + N+W+P+EI MQ DI W N L++ ER+L
Sbjct: 3 IINNDTEHDPNKILPIDYDWAREYYEAGVNNNWIPEEIPMQDDITQW-NGDALSDAERQL 61
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
V+ NLGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D
Sbjct: 62 VEWNLGFFSTAESLTANNIVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
++ Y I SI+ KDEF++ V+ F ++ + L+ L+ F IMEG+FF
Sbjct: 122 PEYLYGMYDRIPSIKQKDEFVVDLTRVINKDGFMIETDEDLRNFLRDLVGFYVIMEGIFF 181
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y GF +L L RQNKM+G + ++YI+RDES+H FG+DLIN I+ ENP +WT EF E+
Sbjct: 182 YAGFAMMLGLKRQNKMVGIGQQFEYIMRDESLHLGFGVDLINQIRTENPGVWTDEFGTEV 241
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFP 324
L +A+ELE YA + P ILG++ K F Y+ IA+ R+ Q+ + + + + NPFP
Sbjct: 242 VDLITEAVELEKIYAYEACPDDILGMSAKQFAEYVEHIADRRLGQLDLPEQYGTD-NPFP 300
Query: 325 WMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
WMSE + + KE NFFET+V EYQSGG+LDW
Sbjct: 301 WMSEQVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit, partial
[Blastopirellula marina DSM 3645]
gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
marina DSM 3645]
Length = 313
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 158/313 (50%), Positives = 221/313 (70%), Gaps = 2/313 (0%)
Query: 3 IKLNNKKKTLKINSFERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQE 61
+ + N + L+ +R+ +K+++N DVNQL+P KYNWAW+ Y++ CANHWMP E
Sbjct: 1 MSIPNVENQLETGDGQRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTE 60
Query: 62 INMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLL 121
+ M +DIE W++ LT++ER ++ RNLGFFSTA+SL NN+VL ++H+T ECRQYLL
Sbjct: 61 VPMTKDIETWRSD-KLTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLL 119
Query: 122 RQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181
RQAFEEA+H+H + Y+VESLGL+E EIFN Y+E+ +I KD+F + + F T +
Sbjct: 120 RQAFEEAVHSHTFLYVVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDS 179
Query: 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
+ Q LK+LI + IMEG+FFY GFV +L+ R+N M G E +QYILRDE++H NFG
Sbjct: 180 YEGLQAFLKNLIGYYIIMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETVHLNFG 239
Query: 242 IDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRF 301
IDLIN IK ENP+LWT EF EI L +A+ELE YA D +P GILGLN F+ Y+ +
Sbjct: 240 IDLINGIKAENPDLWTAEFQAEIIDLIKQAVELEIEYAGDCLPNGILGLNRDLFRDYVHY 299
Query: 302 IANCRMKQIGIKQ 314
+A+ R+++IG+ +
Sbjct: 300 VADRRVERIGLPK 312
>gi|389845523|ref|YP_006347762.1| ribonucleoside-diphosphate reductase subunit beta [Haloferax
mediterranei ATCC 33500]
gi|448616861|ref|ZP_21665571.1| ribonucleotide-diphosphate reductase subunit beta [Haloferax
mediterranei ATCC 33500]
gi|388242829|gb|AFK17775.1| ribonucleoside-diphosphate reductase beta chain [Haloferax
mediterranei ATCC 33500]
gi|445751516|gb|EMA02953.1| ribonucleotide-diphosphate reductase subunit beta [Haloferax
mediterranei ATCC 33500]
Length = 330
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 159/330 (48%), Positives = 221/330 (66%), Gaps = 4/330 (1%)
Query: 27 IINGHT--DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
I+N T D N+++P Y+WA + Y AN+W+P+E+ M D++ WK LTE ERRL
Sbjct: 3 IVNNDTQHDPNKILPIDYDWAREYYKQGVANNWVPEEVPMGDDVQQWKTG-ELTESERRL 61
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
V+ NLGFFSTA+SL ANNIVL Y H+TAPECRQYLLRQA+EEAIHT + Y +SLG D
Sbjct: 62 VEWNLGFFSTAESLTANNIVLAIYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
++ Y I +I KDE+++ + F + + L+ L+ F IMEG+FF
Sbjct: 122 PEYMYGMYDRIPTIEAKDEYVVSLTQAIDKDDFTIETDDDLRAFLRDLVGFYVIMEGIFF 181
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y GF +LAL R+ KM+G E ++YI+RDES+H NFGIDLINTI+ ENP +WT EF E+
Sbjct: 182 YAGFAMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGIDLINTIRDENPGVWTDEFEAEV 241
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFP 324
+L ++A++LE YA + P +LG++ F Y+ ++A+ R+ Q+ + F + NPFP
Sbjct: 242 RELIVEAVDLERTYAHEACPPNVLGMSADQFAEYVEYVADRRLGQLRMGAEFGTD-NPFP 300
Query: 325 WMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
WM+E + + KE NFFET+V EYQSGG L+W
Sbjct: 301 WMTEQVDLNKEKNFFETQVTEYQSGGQLNW 330
>gi|448475863|ref|ZP_21603218.1| ribonucleotide-diphosphate reductase subunit beta [Halorubrum
aidingense JCM 13560]
gi|445816081|gb|EMA65990.1| ribonucleotide-diphosphate reductase subunit beta [Halorubrum
aidingense JCM 13560]
Length = 330
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 223/326 (68%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ H D N+++P Y+WA + Y + N+W+P+E+ M D+ W+N LTE ER+LV+ N
Sbjct: 7 DSHHDPNKILPIDYDWAREYYRNGVNNNWVPEEVPMADDVHQWEND-ELTEAERQLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANN+VL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D +
Sbjct: 66 LGFFSTAESLTANNLVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYL 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I +I+ KDEF++ + F + + LL+ L+ F IMEG+FFY GF
Sbjct: 126 YGMYDRIPAIQAKDEFVVDLTRAIDRPDFTIETEDDVRALLRDLVGFYVIMEGVFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+LAL R+ KM+G E ++YI+RDES+H NFGIDLINT++ E+P WT +F EI +L
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGIDLINTLREEHPGAWTDDFEAEIAELI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A+ LE YAE+ P G+LG++ + F Y+ +IA+ R+ Q+G+ + F E NPF WMSE
Sbjct: 246 AEAVRLESTYAEEACPPGLLGMSAEGFIEYVEYIADRRLTQLGMDEQFGTE-NPFLWMSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + +E+NFFE +V EYQSGG+LDW
Sbjct: 305 AVDLNREANFFERQVTEYQSGGSLDW 330
>gi|433639681|ref|YP_007285441.1| ribonucleotide reductase, beta subunit [Halovivax ruber XH-70]
gi|433291485|gb|AGB17308.1| ribonucleotide reductase, beta subunit [Halovivax ruber XH-70]
Length = 330
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 152/326 (46%), Positives = 220/326 (67%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P Y+WA + Y++ N+W+P+EI MQ D+ W N L++ ER+LV+ N
Sbjct: 7 DDQHDPNKILPIDYDWAREYYVAGVNNNWVPEEIPMQDDVSQW-NDDTLSDAERQLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D +
Sbjct: 66 LGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYL 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y + SI +KD F++ + D F + + L+ LI F IMEG+FFY GF
Sbjct: 126 YGMYERVPSIAEKDAFVVDLTQSIDDADFTIETADDVRAFLRDLIGFYVIMEGIFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L R+N+M+G + ++YILRDES+H FG+DLIN I++ENP++WT EF E+ L
Sbjct: 186 AMMLGLKRRNRMVGIGQQFEYILRDESLHVGFGVDLINQIRVENPDVWTPEFEAEVADLI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A++LE YA + P +LG++ F Y+ ++A+ R+ Q+ + + + E NPFPW+SE
Sbjct: 246 AEAVDLEQIYATEACPADVLGMSAPQFAEYVEYVADRRLTQLDMDEQYGTE-NPFPWLSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + KE NFFET+V EYQSGG+LDW
Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
paucihalophilus DX253]
gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
paucihalophilus DX253]
Length = 330
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 158/322 (49%), Positives = 214/322 (66%), Gaps = 2/322 (0%)
Query: 33 DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFF 92
D N+++P Y+WA D Y + N+W+P+EI MQ DI W N L++ ER+L++ NLGFF
Sbjct: 11 DPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQW-NGDALSDAERQLIEWNLGFF 69
Query: 93 STADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY 152
STA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D ++ Y
Sbjct: 70 STAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDYLYGMY 129
Query: 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
+ SI +KDEF++ + F + ++ L+ L+ F IMEG+FFY GF +L
Sbjct: 130 DRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFYVIMEGVFFYAGFAMML 189
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L RQNKM+G + ++YILRDES+H FG+DLIN I+ ENPN WT F E+ L A+
Sbjct: 190 GLKRQNKMVGIGQQFEYILRDESLHVGFGVDLINEIRAENPNAWTDAFGDEVTDLITNAV 249
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
ELE YA + P ILG++ F Y+ IA+ R+ Q+ + + + E NPFPWMSE + +
Sbjct: 250 ELEKIYAYEACPDEILGMSAAQFAEYVEHIADRRLAQLDLDEQYGTE-NPFPWMSEQVDL 308
Query: 333 KKESNFFETRVMEYQSGGTLDW 354
KE NFFET+V EYQSGG+LDW
Sbjct: 309 NKEKNFFETQVTEYQSGGSLDW 330
>gi|448313913|ref|ZP_21503623.1| ribonucleotide-diphosphate reductase subunit beta [Natronolimnobius
innermongolicus JCM 12255]
gi|445596890|gb|ELY50973.1| ribonucleotide-diphosphate reductase subunit beta [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 221/326 (67%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P Y+WA + Y + N+W+P+EI MQ D+ W N L++ ER+LV+ N
Sbjct: 7 DAEHDPNKVLPIDYDWAREYYEAGVNNNWVPEEIPMQDDVTQW-NGDALSDAERQLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG + +
Sbjct: 66 LGFFSTAESLTANNIVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYL 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y+ + SI++KDEF++ V+ F ++ + L+ L+ F IMEG+FFY GF
Sbjct: 126 YGMYNRVPSIQEKDEFVVDLTRVINRTGFTIETDEDLRSFLRDLVGFYVIMEGIFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L RQNKM+G + ++YI+RDES+H FG+DLIN I+MENP +WT EF E+ L
Sbjct: 186 AMMLGLKRQNKMVGVGQQFEYIMRDESLHVGFGVDLINQIRMENPGVWTDEFGAEVINLI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A+ELE YA + P ILG++ + F Y+ IA+ R+ Q+ + + + NPFPWMSE
Sbjct: 246 TEAVELEKVYAYEACPGEILGMSPEQFAEYVEHIADRRLGQLDVPEQYG-TANPFPWMSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + KE NFFET+V EYQSGG+LDW
Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus
utahensis DSM 12940]
gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM
12940]
Length = 330
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 220/322 (68%), Gaps = 2/322 (0%)
Query: 33 DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFF 92
D N+++P Y+WA + Y + N+W+P+EI MQ D+ W N LT+ ER+LV+ NLGFF
Sbjct: 11 DPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQW-NGDELTDAERQLVEWNLGFF 69
Query: 93 STADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY 152
STA+SL ANN+VL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG + ++ Y
Sbjct: 70 STAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYLYGMY 129
Query: 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
+ SI +KD+F++ + D +F + + LL+ L+ F IMEG+FFY GF +L
Sbjct: 130 DRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFYVIMEGIFFYAGFAMML 189
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L RQNKM+G + ++YI+RDES+H FG+DLI+ I+ ENP +WT EF E+ L +A+
Sbjct: 190 GLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDEFDSEVIDLIKEAV 249
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
ELE YA + P+ ILG++ F Y+ +IA+ R+ Q+ + + + E NPFPWMSE + +
Sbjct: 250 ELEQIYAREACPEEILGMSGSQFADYVEYIADRRLDQLDLPEQYGTE-NPFPWMSEQVDL 308
Query: 333 KKESNFFETRVMEYQSGGTLDW 354
KE NFFET+V EYQSGG+L+W
Sbjct: 309 NKEKNFFETQVTEYQSGGSLEW 330
>gi|409730727|ref|ZP_11272288.1| ribonucleotide-diphosphate reductase subunit beta [Halococcus
hamelinensis 100A6]
gi|448723742|ref|ZP_21706258.1| ribonucleotide-diphosphate reductase subunit beta [Halococcus
hamelinensis 100A6]
gi|445787281|gb|EMA38029.1| ribonucleotide-diphosphate reductase subunit beta [Halococcus
hamelinensis 100A6]
Length = 330
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 152/326 (46%), Positives = 219/326 (67%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D NQ++P Y+WA + Y + N+W+P+E+ MQ D+ W N L++ ER+L++ N
Sbjct: 7 DAEHDPNQILPIDYDWAREYYEAGVNNNWVPEEVPMQDDVTQW-NGDELSDAERQLIEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEAIHT + Y +SLG D +
Sbjct: 66 LGFFSTAESLTANNIVLAVYDYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYL 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y + SI++KD+F++ V+ F ++ + L+ L+ F +MEG+FFY GF
Sbjct: 126 YGMYDRVPSIKEKDDFVVDLTQVIDRDDFTIETDEDLRNFLRDLVGFYVVMEGVFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L RQNKM+G + ++YI+RDES+H FG+DLIN I+ ENP +WT F +E+ L
Sbjct: 186 AMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRTENPGVWTDAFGEEVADLI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
A++LE YA + P ILG++ F Y+ IA+ R++Q+ + + + E NPFPWMSE
Sbjct: 246 ADAVDLEKIYAYEACPDEILGMSPDQFAEYVEHIADRRLEQLNLPERYGTE-NPFPWMSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + KE NFFET+V EYQSGG+LDW
Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
gi|448282269|ref|ZP_21473557.1| ribonucleotide-diphosphate reductase subunit beta [Natrialba
magadii ATCC 43099]
gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
gi|445576620|gb|ELY31071.1| ribonucleotide-diphosphate reductase subunit beta [Natrialba
magadii ATCC 43099]
Length = 330
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/326 (47%), Positives = 219/326 (67%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P Y+WA + Y + N+W+P+EI MQ D+ W N L++ ER+LV+ N
Sbjct: 7 DAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQW-NGDALSDAERQLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y H+TAPECRQYLLRQA+EEAIHT + Y +SLG + +
Sbjct: 66 LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDYM 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I SI +KDEF+I V+ F ++ + ++ L+ F IMEG+FFY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFYVIMEGIFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L RQNKM+G + ++YI+RDES+H FG+DLI+ I+MENP++WT F E+ +L
Sbjct: 186 AMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRMENPDVWTDAFGDEVVELI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A+ELE YA + P ILG++ F Y+ IA+ R+ Q+ + + + NPFPW+SE
Sbjct: 246 TEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLDLPTQYGTD-NPFPWLSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + KE NFFET+V EYQSGG+LDW
Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|448360048|ref|ZP_21548691.1| ribonucleotide-diphosphate reductase subunit beta [Natrialba
chahannaoensis JCM 10990]
gi|445640425|gb|ELY93513.1| ribonucleotide-diphosphate reductase subunit beta [Natrialba
chahannaoensis JCM 10990]
Length = 330
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 216/326 (66%), Gaps = 2/326 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P Y+WA + Y + N+W+P+EI MQ D+ W N LT+ ER+LV+ N
Sbjct: 7 DAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQW-NGDALTDAERQLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y H+TAPECRQYLLRQA+EEAIHT + Y +SLG + +
Sbjct: 66 LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDYM 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I SI +KDEF+I V+ F ++ + L+ L+ F IMEG+FFY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFLRDLVGFYVIMEGIFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L RQNKM+G + ++YI+RDES+H FG+DLI+ I+ ENP +WT F E+ L
Sbjct: 186 AMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDAFGDEVVDLI 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A+ELE YA + P ILG++ F Y+ IA+ R+ Q+ + + + NPFPW+SE
Sbjct: 246 TEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLNLPTQYGTD-NPFPWLSE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ + KE NFFET+V EYQSGG+LDW
Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
sp. NRC-1]
gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
salinarum R1]
gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1]
gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium
salinarum R1]
Length = 331
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/327 (45%), Positives = 217/327 (66%), Gaps = 2/327 (0%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+ D N+++P Y+WA + Y AN+W P+E+ MQ DI W+ LT+ ER+LV+ N
Sbjct: 7 DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQGN-ELTDAERQLVEWN 65
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y ++TAPECRQYLLRQA+EEA+HT + Y +SLG D +
Sbjct: 66 LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I SI +KDEF++ + D F + + L+ L+ F IMEG+FFY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFYVIMEGIFFYAGF 185
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+LAL R+ KM+G E ++YI+RDES+H NFG+DLIN I+ E+P++WT +F E+ L
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINQIRDEHPDVWTADFEAEVNSLM 245
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
A++LE YA D P +LG++ + F Y+ ++A+ R +Q+ + ++ + NPFPWM+E
Sbjct: 246 RDAVDLEQLYARDACPDDLLGMSSEQFADYVEYVADRRFQQLRMDPVYGTD-NPFPWMTE 304
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDWE 355
+ + E+NFFE V EYQ GG+LDW+
Sbjct: 305 QVDLNTETNFFERNVSEYQQGGSLDWD 331
>gi|345006420|ref|YP_004809273.1| ribonucleotide reductase [halophilic archaeon DL31]
gi|344322046|gb|AEN06900.1| ribonucleotide reductase [halophilic archaeon DL31]
Length = 331
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 217/322 (67%), Gaps = 3/322 (0%)
Query: 33 DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFF 92
D N+++PF Y WA + Y + N+W+P+EI M DI+ W N L+E ER+LV+ NLGFF
Sbjct: 13 DPNKILPFDYEWAREYYEAGVDNNWVPEEIPMGNDIDQW-NGDDLSEAERQLVEWNLGFF 71
Query: 93 STADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY 152
STA+SL ANN+VL Y H+TAPECRQYLLRQA+EEAIHT + Y +SLG D ++ Y
Sbjct: 72 STAESLTANNLVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDYLYGMY 131
Query: 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I +I KDEF++ V+ D F + ++ + L+ L+ F IMEG+FFY GF +L
Sbjct: 132 DRIPAIAAKDEFVVDLTRVVDDPAFTIDDEEDVRAFLRDLVGFYVIMEGVFFYAGFAMML 191
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L RQ K+ G E ++YI+RDES+H FG++LI+ I+ E + WT EF EI +L L+A+
Sbjct: 192 GLKRQGKLTGIGEQFEYIMRDESLHLGFGVELIDAIRAET-DAWTPEFEAEIRELMLEAV 250
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
ELE YA + P+ +LG+ + F Y+ ++A+ R+ Q+ ++ + E NPFPW+SE +
Sbjct: 251 ELEQRYAREACPEEVLGMGPEQFAEYVEYVADRRLGQLDMEPAYGTE-NPFPWLSEAADL 309
Query: 333 KKESNFFETRVMEYQSGGTLDW 354
+E NFFET+V EY+SGG+L+W
Sbjct: 310 NREKNFFETQVTEYRSGGSLEW 331
>gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas syringae pv. syringae FF5]
Length = 243
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 141/242 (58%), Positives = 186/242 (76%)
Query: 114 PECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLT 173
PE RQY+LRQAFEEAIHTHAYQY +ESL +DE EIFN YHEI S+ K + + + ++
Sbjct: 2 PEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSIS 61
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D KF+TG D++LL++LI + C++EG+FFY GF QIL++GR+NKM G +E +QYILRD
Sbjct: 62 DPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRD 121
Query: 234 ESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVK 293
ESMH NFGID+IN IK+ENP+LW E +E Q+ L+ +LE YA DTMP+G+LG+N
Sbjct: 122 ESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAA 181
Query: 294 TFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLD 353
+ YL+FIAN R+ QIG+K+ +P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L
Sbjct: 182 MMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALS 241
Query: 354 WE 355
W+
Sbjct: 242 WD 243
>gi|448726715|ref|ZP_21709107.1| ribonucleotide-diphosphate reductase subunit beta [Halococcus
morrhuae DSM 1307]
gi|445793761|gb|EMA44332.1| ribonucleotide-diphosphate reductase subunit beta [Halococcus
morrhuae DSM 1307]
Length = 331
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 212/326 (65%), Gaps = 4/326 (1%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+GH D N+++P Y WA + Y AN+W P+EI M D+ W L++ ER+LV+ N
Sbjct: 10 DGH-DPNKILPIDYEWAREYYRDGVANNWTPEEIPMGEDVRQWSEG-ELSDAERQLVEWN 67
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y H+TAPECRQYLLRQA+EEA+HT + Y +SLG D +
Sbjct: 68 LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPDYL 127
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I +I DKDEF++ V+ F+ + ++ + ++ LI F IMEG+FFY GF
Sbjct: 128 YGMYDRIPAIEDKDEFVVDLTRVIDRDDFEIQSQEDVRAFMRDLIGFYVIMEGIFFYAGF 187
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L RQ KM G + ++YI+RDES+H FG+DLI+ I+ E WT +F +E+ +L
Sbjct: 188 AMMLGLKRQGKMTGVGQQFEYIMRDESLHLGFGVDLIDAIRTET-GAWTADFGREVRELV 246
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A++LE YA P ILG+ F Y+ ++A+ R+ Q+ + + + NPFPW+SE
Sbjct: 247 TEAVDLERRYARKACPNEILGMGPDQFADYVEYVADRRLGQLDLDPEYGTD-NPFPWLSE 305
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ KE NFFET+V EY++GG+L+W
Sbjct: 306 AADLNKEKNFFETQVTEYRTGGSLEW 331
>gi|448737944|ref|ZP_21719975.1| ribonucleotide-diphosphate reductase subunit beta [Halococcus
thailandensis JCM 13552]
gi|445802528|gb|EMA52832.1| ribonucleotide-diphosphate reductase subunit beta [Halococcus
thailandensis JCM 13552]
Length = 331
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 212/326 (65%), Gaps = 4/326 (1%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+GH D N+++P Y WA + Y AN+W P+EI M D+ W N L++ ER+LV+ N
Sbjct: 10 DGH-DPNKILPIDYEWAREYYRDGVANNWTPEEIPMGEDVRQW-NEGELSDAERQLVEWN 67
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
LGFFSTA+SL ANNIVL Y H+TAPECRQYLLRQA+EEA+HT + Y +SLG D +
Sbjct: 68 LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPDYL 127
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ Y I +I +KDEF++ V+ F+ + ++ + ++ LI F IMEG+FFY GF
Sbjct: 128 YGMYDRIPAIEEKDEFVVDLTRVIDRDDFEIRSQEDVRAFMRDLIGFYVIMEGIFFYAGF 187
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+L L RQ KM G + ++YI+RDES+H FG+DLI+ I+ E WT +F +E+ L
Sbjct: 188 AMMLGLKRQGKMTGVGQQFEYIMRDESLHLGFGVDLIDAIRTET-GAWTADFGREVRDLV 246
Query: 269 LKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+A++LE YA + P ILG+ F Y+ ++A+ R+ Q+ + + + NPFPW+S
Sbjct: 247 TEAVDLERRYAREACPDEILGMGPDQFADYVEYVADRRLGQLDLDPEYGTD-NPFPWLSA 305
Query: 329 MIHIKKESNFFETRVMEYQSGGTLDW 354
+ KE NFFET+V EY++GG+L+W
Sbjct: 306 AADLNKEKNFFETQVTEYRTGGSLEW 331
>gi|448407940|ref|ZP_21574135.1| ribonucleotide-diphosphate reductase subunit beta [Halosimplex
carlsbadense 2-9-1]
gi|445675190|gb|ELZ27725.1| ribonucleotide-diphosphate reductase subunit beta [Halosimplex
carlsbadense 2-9-1]
Length = 331
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/320 (45%), Positives = 211/320 (65%), Gaps = 3/320 (0%)
Query: 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94
N+++P Y WA + Y S AN+W P+EI M D++ +++ LTE ER LV+ NLGFFST
Sbjct: 15 NKILPMDYEWAREYYQSGVANNWTPEEIPMGEDVKQYEDGT-LTEAERDLVEWNLGFFST 73
Query: 95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
A+SL ANNIVL Y ++TAPECRQYLLRQA+EEA+HT + Y +SLG D ++ Y
Sbjct: 74 AESLTANNIVLAVYDYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEYLYGMYDR 133
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
I +I KD+F++ V+ D +F + + + L+ LI F IMEG+FFY GF +L L
Sbjct: 134 IPAIEAKDDFVVDLTRVVDDPEFTIDDEADVRAFLRDLIGFYVIMEGIFFYAGFAMMLGL 193
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
RQNK+ G + ++YI+RDES+H FG+DLI+ ++ E + WT +F E+ +L +A++L
Sbjct: 194 KRQNKLTGIGQQFEYIMRDESLHLGFGVDLIDQVRTET-DAWTDDFEAEVVELIREAVDL 252
Query: 275 EYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
E YA + P+ ILG+ + F Y+ ++A+ R Q+ + + + NPF WMSE + K
Sbjct: 253 ERRYAREACPEEILGMGPEQFAEYVEYVADRRCSQLDLPEQYG-TANPFDWMSEAADLNK 311
Query: 335 ESNFFETRVMEYQSGGTLDW 354
E NFFET+V EYQSGG L+W
Sbjct: 312 EKNFFETQVTEYQSGGQLEW 331
>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 1306
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 132/184 (71%), Positives = 154/184 (83%)
Query: 172 LTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYIL 231
+ D F TG +++DQ LLKSLIVFAC+MEGLFFYVGF QILALGRQNKM G++E YQYIL
Sbjct: 1123 IMDPNFHTGTSESDQVLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYIL 1182
Query: 232 RDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLN 291
RDESMHCNFGIDLIN +K+ENP+LWT EF EI+ LF KA+ELEY YAEDTMP+G+LG+N
Sbjct: 1183 RDESMHCNFGIDLINQLKLENPHLWTPEFKAEIKALFEKAVELEYRYAEDTMPRGVLGMN 1242
Query: 292 VKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGT 351
FK YLR+IAN R QIG++ +FP E NPFPWMSEMI +KKE NFFETRV+EYQSGG
Sbjct: 1243 ASMFKGYLRYIANRRATQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGA 1302
Query: 352 LDWE 355
L W+
Sbjct: 1303 LSWD 1306
>gi|395652935|ref|ZP_10440785.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 226
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 118/191 (61%), Positives = 148/191 (77%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT
Sbjct: 36 RVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLT 95
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +
Sbjct: 96 DDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCI 155
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
ESL +DE EIFN YHEI S+ K + + + ++D KF+TG D++LL++L+ + C+
Sbjct: 156 ESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKELLRNLVAYYCV 215
Query: 199 MEGLFFYVGFV 209
+EG+FFY GF
Sbjct: 216 LEGIFFYCGFT 226
>gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40]
gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
[Saccharophagus degradans 2-40]
Length = 368
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 205/334 (61%), Gaps = 10/334 (2%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+K++INGHTD+NQL PFKY WAWD ++++ NHW P +INM +D+ +K+ LTE ER
Sbjct: 43 DKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQDVYDYKH--NLTEAERH 100
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ + L + +T+D LA NI L +TAPE + Y RQ +EEA+HT YQ+ +E+LGL
Sbjct: 101 MYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIETLGL 160
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ--KLLKSLIVFACIMEG 201
D+ EI+N Y + I K + ++ + L+ T DQ + + I FA + EG
Sbjct: 161 DQGEIYNRYRVVPEINAKIQMANRRLESI--LRSDIDLTDPDQLNNFILAYIFFAAVFEG 218
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
+FY GF I AL R+ M G++E QYI+RDE+MHC FGI ++ I +EN T
Sbjct: 219 CWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDETMHCAFGIQTVSQIIIEN---CTNIDV 275
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERN 321
I+ ++ +A E E YA + + ILG + RFIAN R +Q+G+++ FP +
Sbjct: 276 DAIKTMWEEADEAEANYARYILREPILGYSANDHIEQFRFIANRRARQLGLEEPFPQAKC 335
Query: 322 PFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PW+ E +I+KE NFFETRV+EYQ+GG L+W+
Sbjct: 336 ALPWLDEQANIRKEKNFFETRVIEYQAGG-LEWD 368
>gi|442555749|ref|YP_007365574.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis
N343]
gi|441493196|gb|AGC49890.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis
N343]
Length = 381
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 198/337 (58%), Gaps = 7/337 (2%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+I+NG TD+NQL+PF+Y WAWD +L + NHW P EI+M +D+ + + LT
Sbjct: 51 VNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDVYDYNHT--LTT 108
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
ER + L + +T+D LA NI L +TAPE + Y RQ +EEA+HT YQ+ +E
Sbjct: 109 NERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIE 168
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
SLGL++ EI+N Y + I K ++ + + N + + S I FA I
Sbjct: 169 SLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAIF 228
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI-NTIKMENPNLWTT 258
EG +FY GF I +L R+ M G++E +QYILRDE +HC FGI +I I+ EN L T
Sbjct: 229 EGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDPT 288
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ QL+ + E YA + + I+G N RFIAN R +Q+G+K+ FP
Sbjct: 289 A----VRQLWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 344
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+N PW+ E +++KE NFFETRV EYQ+GG L W+
Sbjct: 345 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 381
>gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis
PHE/MN1-00]
gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis
PHE/MN1-00]
Length = 333
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 198/337 (58%), Gaps = 7/337 (2%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+I+NG TD+NQL+PF+Y WAWD +L + NHW P EI+M +D+ + + LT
Sbjct: 3 VNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDVYDYNHT--LTT 60
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
ER + L + +T+D LA NI L +TAPE + Y RQ +EEA+HT YQ+ +E
Sbjct: 61 NERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIE 120
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
SLGL++ EI+N Y + I K ++ + + N + + S I FA I
Sbjct: 121 SLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAIF 180
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI-NTIKMENPNLWTT 258
EG +FY GF I +L R+ M G++E +QYILRDE +HC FGI +I I+ EN L T
Sbjct: 181 EGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDPT 240
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
+ QL+ + E YA + + I+G N RFIAN R +Q+G+K+ FP
Sbjct: 241 A----VRQLWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 296
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+N PW+ E +++KE NFFETRV EYQ+GG L W+
Sbjct: 297 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 333
>gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
thiooxidans DMS010]
gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
thiooxydans DMS010]
Length = 383
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 202/344 (58%), Gaps = 5/344 (1%)
Query: 12 LKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELW 71
+ +N+ + IN +K++ING D+NQL PFKY WAW+ +L++ NHW P +INM +D+ +
Sbjct: 45 MPLNNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDY 104
Query: 72 KNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 131
++ LT EER + + L + +T+D LA NI L +TAPE + Y RQ +EEA+HT
Sbjct: 105 RH--KLTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHT 162
Query: 132 HAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191
YQ+ +E++GLD+ EI+N Y + I K + +D + + + + S
Sbjct: 163 WTYQHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSDIDLRDRDELENFVMS 222
Query: 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME 251
FA I EG +FY GF I AL R+ M G++E QYI+RDE MH +FGI + I M+
Sbjct: 223 YAFFAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGIRVCKQI-MK 281
Query: 252 NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIG 311
N+ T K+++Q+F +A E YA + ILG + + R+ AN R KQ+G
Sbjct: 282 EENI--TLDPKKVQQMFEEADAAEETYAGYILRDPILGYSKEVHHGQFRYTANRRAKQLG 339
Query: 312 IKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++ FP PW+ E +++KE NFFET+V EYQ+GG L W+
Sbjct: 340 FEEPFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 383
>gi|358449492|ref|ZP_09159976.1| ribonucleotide reductase, beta subunit [Marinobacter manganoxydans
MnI7-9]
gi|357226247|gb|EHJ04728.1| ribonucleotide reductase, beta subunit [Marinobacter manganoxydans
MnI7-9]
Length = 352
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 202/335 (60%), Gaps = 5/335 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K++ING TD+NQL PFKY WAW+ ++++ NHW P ++NM +D+ + + LT
Sbjct: 23 VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHH--RLTA 80
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
E+ + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT AYQ+ +E
Sbjct: 81 PEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQHCIE 140
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
+L LD+ EI+N Y + +I K + +D N + Q+ + S + FA +
Sbjct: 141 TLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDLQEFIMSYLFFAAVF 200
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG +FY GF I AL R+ M G+ E QYILRDE+MH +FG+ ++N I +E N+ T
Sbjct: 201 EGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQI-VEEENI--TF 257
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
K + +++ ++ E YA+ + ILG + + RF+AN R + +G+++ FP
Sbjct: 258 DPKAVREMWDESEAAERAYADYILRDPILGYSAEYHSEQFRFVANRRARTVGLEEPFPGA 317
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+N PW+ E ++KE NFFETRV+EYQ+G L+W
Sbjct: 318 KNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352
>gi|385333389|ref|YP_005887340.1| ribonucleotide-diphosphate reductase subunit beta [Marinobacter
adhaerens HP15]
gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [Marinobacter
adhaerens HP15]
Length = 352
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 202/335 (60%), Gaps = 5/335 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K++ING TD+NQL PFKY WAW+ ++++ NHW P ++NM +D+ + + LT
Sbjct: 23 VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHH--RLTA 80
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
E+ + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT AYQ+ +E
Sbjct: 81 PEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQHCIE 140
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
+L LD+ EI+N Y + +I K + +D N + Q+ + S + FA +
Sbjct: 141 TLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDLQEFIMSYLFFAAVF 200
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG +FY GF I AL R+ M G+ E QYILRDE+MH +FG+ ++N I +E N+ T
Sbjct: 201 EGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQI-VEEENI--TF 257
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
K + +++ ++ E YA+ + ILG + + RF+AN R + +G+++ FP
Sbjct: 258 DPKAVREMWDESEAAEKAYADYILRDPILGYSAEYHSEQFRFVANRRARTVGLEEPFPGA 317
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+N PW+ E ++KE NFFETRV+EYQ+G L+W
Sbjct: 318 KNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352
>gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
DG893]
gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
DG893]
Length = 352
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 200/335 (59%), Gaps = 5/335 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K++ING TD+NQL PFKY WAW+ ++++ NHW P ++NM +D+ + + L+
Sbjct: 23 VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHH--RLSA 80
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
E+ + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT AYQ+ +E
Sbjct: 81 PEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQHCIE 140
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
+L LD+ EI+N Y + +I K + +D + + Q+ + S + FA +
Sbjct: 141 TLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDDLQEFIMSYLFFAAVF 200
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG +FY GF I AL R+ M G+ E QYILRDE+MH +FG+ ++N I +E N+ T
Sbjct: 201 EGAWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQI-LEEENI--TL 257
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
K + ++ ++ E YA + ILG + + RF+AN R + +G+++ FP
Sbjct: 258 DPKAVRDMWDESEAAETAYANYILRDPILGYSAQYHSEQFRFVANRRARTVGLEEPFPGA 317
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+N PW+ E ++KE NFFETRV+EYQ+G L+W
Sbjct: 318 KNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352
>gi|335042802|ref|ZP_08535829.1| ribonucleotide reductase, beta subunit [Methylophaga
aminisulfidivorans MP]
gi|333789416|gb|EGL55298.1| ribonucleotide reductase, beta subunit [Methylophaga
aminisulfidivorans MP]
Length = 388
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 7/347 (2%)
Query: 10 KTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIE 69
K + + + + +N +K++ING D+NQL PFKY WAW+ +L++ NHW P +INM +D+
Sbjct: 48 KKMPLMNAKPVNADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVH 107
Query: 70 LWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAI 129
+++ LT EER + + L + +T+D LA NI L +TAPE + Y RQ +EEA+
Sbjct: 108 DYRH--KLTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEAL 165
Query: 130 HTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189
HT YQ+ +E++GLD+ EI+N Y + I K + ++ + + + +
Sbjct: 166 HTWTYQHCIETIGLDQSEIYNRYRVVPEIYQKIKLANDRLNTVMRSDIDLHDRDELENFV 225
Query: 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI- 248
S FA I EG +FY GF I AL R+ M G++E QYI+RDE MH +FGI + I
Sbjct: 226 MSYAFFAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGIRVCKQIM 285
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
K EN L K+++Q+F +A E YA + ILG + + R+ AN R K
Sbjct: 286 KEENVTL----DPKKVQQMFEEADAAEETYAGYILRDPILGYSKEVHHGQFRYTANRRAK 341
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
Q+G ++ FP PW+ E +++KE NFFET+V EYQ+GG L W+
Sbjct: 342 QLGFEEPFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 388
>gi|387816187|ref|YP_005431682.1| ribonucleoside-diphosphate reductase subunit beta [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381341212|emb|CCG97259.1| Ribonucleoside-diphosphate reductase, beta subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 357
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 195/335 (58%), Gaps = 5/335 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K++ING TD+NQL PFKY WAW+ ++++ NHW P ++NM +D+ + + LT
Sbjct: 28 VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHH--RLTP 85
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
E+ + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT YQ+ +E
Sbjct: 86 AEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHCIE 145
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
+L LD+ EI+N Y + I K + +D N + Q + S + FA +
Sbjct: 146 TLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPEELQDFVMSYLFFAAVF 205
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG +FY GF I AL R+ M G+ E QYILRDE+MH +FG+ ++N I E T
Sbjct: 206 EGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEEK---ITL 262
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
K + +++ ++ E YA + ILG + + RF+AN R + +G+++ FP
Sbjct: 263 DPKAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTVGLEEPFPGA 322
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+N PW+ E ++KE NFFETRV+EYQ+G L+W
Sbjct: 323 KNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 357
>gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
Length = 352
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 194/335 (57%), Gaps = 5/335 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K++ING TD+NQL PFKY WAW+ ++++ NHW P ++NM +D+ + + LT
Sbjct: 23 VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHH--RLTP 80
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
E+ + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT YQ+ +E
Sbjct: 81 AEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHCIE 140
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
+L LD+ EI+N Y + I K + +D N Q + S + FA +
Sbjct: 141 TLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVMSYLFFAAVF 200
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG +FY GF I AL R+ M G+ E QYILRDE+MH +FG+ ++N I E T
Sbjct: 201 EGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEEK---ITL 257
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
K + +++ ++ E YA + ILG + + RF+AN R + +G+++ FP
Sbjct: 258 DPKAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTVGLEEPFPGA 317
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+N PW+ E ++KE NFFETRV+EYQ+G L+W
Sbjct: 318 KNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352
>gi|387127721|ref|YP_006296326.1| ribonucleotide reductase subunit beta [Methylophaga sp. JAM1]
gi|386274783|gb|AFI84681.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Methylophaga sp. JAM1]
Length = 382
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 194/337 (57%), Gaps = 7/337 (2%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+++NG D+NQL PFKY WAW+ +L++ NHW P +INM +D+ +++ LT
Sbjct: 52 VNADDKRVVNGLADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDYRH--KLTL 109
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
EER + + L + +T+D LA NI L +TAPE + Y RQ +EEA+HT YQ+ +E
Sbjct: 110 EERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIE 169
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
++GLD+ EI+N Y + I K + +D + + + + S FA I
Sbjct: 170 TIGLDQSEIYNRYRVVPEIYQKIQLANKRLDTVMRSDIDLRDKDELENFVMSYAFFAGIF 229
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI-NTIKMENPNLWTT 258
EG +FY GF I AL R+ M G+ E QYI+RDE MH +FGI + IK EN L
Sbjct: 230 EGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHASFGIRVCRQIIKEENVKL--- 286
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
K+I+++F +A E Y + ILG + + RF AN R KQ+G ++ FP
Sbjct: 287 -DPKKIQEMFEEADAAEATYGGYILRDPILGYSKEAHHGQFRFTANRRAKQLGFEEPFPG 345
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PW+ E +++KE NFFET+V EYQ+GG L W+
Sbjct: 346 AEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 382
>gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC
2396]
gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC
2396]
Length = 405
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 193/338 (57%), Gaps = 5/338 (1%)
Query: 17 FERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+ +N +K+++NG TD+NQL PFKY WAW+ +L++ NHW P +INM +D+ + +
Sbjct: 73 LDPVNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVYDYHH--K 130
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT EE+ + + L + +T+D LA NI L ++APE + Y RQ +EE++HT YQ+
Sbjct: 131 LTLEEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESLHTWTYQH 190
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
+E++GLD+ EI+N Y +I K + I L N + + + + I FA
Sbjct: 191 CIETIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFVMAYIFFA 250
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
I EG +FY GF I AL R+ M G+ E QYI+RDE MHC FGI ++ I E
Sbjct: 251 GIFEGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHCAFGIRVVKQIIKEE---G 307
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T K I+ L+ +A E YA + + ILG + RFIAN R KQ+ + + F
Sbjct: 308 VTLDPKAIKTLWEEAEAAETGYAHFLLKEPILGYTAEDHIEQFRFIANRRAKQLKLDEPF 367
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
P N PW+ E ++KE NFFETRV EYQ+G +L W
Sbjct: 368 PGAGNALPWLDEQASMRKEKNFFETRVTEYQTGASLQW 405
>gi|407716179|ref|YP_006837459.1| ribonucleoside-diphosphate reductase subunit beta [Cycloclasticus
sp. P1]
gi|407256515|gb|AFT66956.1| Ribonucleoside-diphosphate reductase, beta subunit [Cycloclasticus
sp. P1]
Length = 369
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 195/343 (56%), Gaps = 21/343 (6%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
IN +K++ING D+NQL PFKY+WAW+ ++++ NHW P ++NM +DI +++ LT
Sbjct: 40 INPEDKRVINGMADINQLAPFKYHWAWNYFINANKNHWTPLDVNMTQDIHDYQH--KLTP 97
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
EER + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT YQ+ +E
Sbjct: 98 EERHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWTYQHCIE 157
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
++GLD+ EI+N Y + I K + + + N Q + + FA I
Sbjct: 158 TIGLDQSEIYNRYRVVPQIHHKIQLCNQRLGSIMRPDIDLTNKDELQNFVMAYFFFAAIF 217
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG +FY GF I AL R+ M G++E QYI+RDE MHC+FG+ +I I +E
Sbjct: 218 EGTWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHCSFGLRVIKQILIE-------- 269
Query: 260 FCKEIEQLFLKAIELEYY--------YAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIG 311
E QL +A++ + YA + K ILG N RFIAN R + +
Sbjct: 270 ---ENIQLDPQAVQALWEEAEAAELDYANYLLEKPILGYNKADHIEQFRFIANRRSRTLA 326
Query: 312 IKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+K+ FP +N W+ E +++KE NFFETRV EYQ+GG L+W
Sbjct: 327 LKEPFPGAKNTLAWLDEQANLRKEKNFFETRVTEYQTGGALNW 369
>gi|372488573|ref|YP_005028138.1| ribonucleotide reductase subunit beta [Dechlorosoma suillum PS]
gi|359355126|gb|AEV26297.1| ribonucleotide reductase, beta subunit [Dechlorosoma suillum PS]
Length = 394
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/341 (38%), Positives = 192/341 (56%), Gaps = 7/341 (2%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
S IN +K+++NG D+NQL PFKY WAW+ +L++ NHW P EI+M +D+ + +
Sbjct: 60 SLAPINPEDKRVVNGKADINQLAPFKYPWAWEFFLNANRNHWTPLEISMAQDVHDYNH-- 117
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
LT ER + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT YQ
Sbjct: 118 KLTPAERHVFENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQ 177
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
+ +ESLGLD+ EI+N Y + I K ++ + F + N + S + F
Sbjct: 178 HCIESLGLDQKEIYNRYRVVPEIHGKIALANRRLERVMRSDFDLTDRDNLHEFALSYLFF 237
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI-KMENPN 254
A I EG +FY GF I AL R+ M G++E QYI+RDE +HC FGI ++ + + EN
Sbjct: 238 AGIFEGCWFYNGFTPIFALQRRGLMKGTAEQLQYIMRDEVLHCAFGIRVVRQLLQEENLT 297
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
L + E+ Y + + ILG N + RFIAN R +Q+G+ +
Sbjct: 298 LDPVQVKALWEEAEAAESAYAGY----ILREPILGYNADLHRDQFRFIANRRARQLGLAE 353
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
FP N PW+ E +++KE NFFETRV EYQ+GG L W+
Sbjct: 354 PFPGAENVLPWLDEQANMRKEKNFFETRVTEYQTGGALAWD 394
>gi|399546852|ref|YP_006560160.1| ribonucleoside-diphosphate reductase subunit beta [Marinobacter sp.
BSs20148]
gi|399162184|gb|AFP32747.1| Ribonucleoside-diphosphate reductase subunit beta [Marinobacter sp.
BSs20148]
Length = 352
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 204/352 (57%), Gaps = 10/352 (2%)
Query: 7 NKKKTLKI---NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
+KK KI +S +N +K++ING+TDVNQL PFKY WAW+ ++++ NHW P ++N
Sbjct: 7 DKKPESKIVLNSSVAPVNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVN 66
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M +D+ + + L E+ + + L + +T+D LA NI L +TAPE + Y RQ
Sbjct: 67 MSQDVHDYHH--RLNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQ 124
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
+EEA+HT YQ+ +E+L LD+ EI+N Y + I K + ++ N
Sbjct: 125 VYEEAVHTWTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKD 184
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
+ Q+ + S + FA + EG +FY GF I AL R+ M G+ E +QYILRDE+MH +FG+
Sbjct: 185 DLQEFIMSYLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLK 244
Query: 244 LINTI-KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFI 302
++N I + EN N K + +++ ++ E YA + ILG + + RF+
Sbjct: 245 VVNQILEEENINF----DPKAVREMWDESEAAERAYANYILRDPILGYSAEYHIEQFRFV 300
Query: 303 ANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
AN R + + + + FP +N PW+ E ++KE NFFETRV+EYQ+G L+W
Sbjct: 301 ANRRARTVNLPEPFPGAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352
>gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
Length = 352
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 204/351 (58%), Gaps = 8/351 (2%)
Query: 7 NKKKTLKI---NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
+KK KI +S +N +K++ING+TDVNQL PFKY WAW+ ++++ NHW P ++N
Sbjct: 7 DKKPESKIALNSSVAPVNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVN 66
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M +D+ + + L E+ + + L + +T+D LA NI L +TAPE + Y RQ
Sbjct: 67 MSQDVHDYHH--RLNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQ 124
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
+EEA+HT YQ+ +E+L LD+ EI+N Y + I K + ++ N
Sbjct: 125 VYEEAVHTWTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKD 184
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
+ Q+ + S + FA + EG +FY GF I AL R+ M G+ E +QYILRDE+MH +FG+
Sbjct: 185 DLQEFIMSYLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLK 244
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
++N I +E N+ + K + ++ ++ E YA + ILG + + RF+A
Sbjct: 245 VVNQI-LEEENI--SFDPKAVRDMWDESEAAESDYANYILRDPILGYSAEYHIEQFRFVA 301
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
N R + + + + FP +N PW+ E ++KE NFFETRV+EYQ+G L+W
Sbjct: 302 NRRARTVNLPEPFPGAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352
>gi|387131539|ref|YP_006294429.1| ribonucleotide reductase subunit beta [Methylophaga sp. JAM7]
gi|386272828|gb|AFJ03742.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Methylophaga sp. JAM7]
Length = 390
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 193/337 (57%), Gaps = 7/337 (2%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+++NG TD+NQL PFKY WAW +L++ NHW P +INM +D+ +++ LT
Sbjct: 60 VNVDDKRVVNGETDINQLAPFKYPWAWQFFLNANKNHWTPLDINMAQDVHDYRH--KLTM 117
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
EER + + L + +T+D LA NI L + APE + Y RQ +EE++HT YQ+ +E
Sbjct: 118 EERHVYENVLSYLTTSDILAMRNIGLAVMEKMAAPELQIYQARQVYEESLHTWTYQHCIE 177
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
++GLD+ EI+N Y + I K +F ++ + + + + S FA I
Sbjct: 178 TIGLDQAEIYNRYRVVPEIYQKIKFANDRLNTVLRSDIDLRDRDELETFVMSYAFFAGIF 237
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINT-IKMENPNLWTT 258
EG +FY GF I AL R+ M G++E QYI+RDE MH FGI + IK EN L
Sbjct: 238 EGAWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHAAFGIRVCKQIIKEENVKL--- 294
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
K+I+Q+F +A E Y+ + ILG + + R++ N R KQ+G + FP
Sbjct: 295 -DPKKIQQMFEEADAAEEIYSSYILRDPILGYSKEMHHGQFRYVVNRRAKQLGFAEPFPG 353
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PW+ E +++KE NFFET+V EYQ+G L W+
Sbjct: 354 ADATLPWLEEQANMRKEKNFFETKVTEYQTGAGLKWD 390
>gi|386816897|ref|ZP_10104115.1| ribonucleotide reductase [Thiothrix nivea DSM 5205]
gi|386421473|gb|EIJ35308.1| ribonucleotide reductase [Thiothrix nivea DSM 5205]
Length = 428
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 189/332 (56%), Gaps = 5/332 (1%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+K++ING D+NQL PFKY WAW+ ++++ NHW P +INM +D+ + + L EE
Sbjct: 102 DKRVINGSGDINQLAPFKYPWAWEFFINANKNHWTPLDINMAQDVHDYHH--NLKPEEVH 159
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ + L + +T+D LA NI L +TAPE + Y RQ +EEA+HT YQ+ +E++GL
Sbjct: 160 VYENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIETIGL 219
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
D+ EI+N Y + I K + ++ N + + S FA I EG +
Sbjct: 220 DQSEIYNRYRVVPEINGKIQLANRRLNDALRADIDLKNRDDLHDFVLSYTFFAGIFEGCW 279
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF I AL R+ M G++E QYI+RDE +HC+FGI ++ I E + ++
Sbjct: 280 FYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVLHCSFGIRVVRQIMQEENVKLDPQAVRD 339
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
+ A + + +P ILG N + RFIAN R +Q+G+++ FP +N
Sbjct: 340 MWDEAEAAEQAYAKF---LLPNPILGYNAEDHSQQFRFIANRRARQLGMEEPFPGAQNAL 396
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PW+ E +++KE NFFETRV EYQ+GG L W+
Sbjct: 397 PWLDEQSNMRKEKNFFETRVTEYQTGGALKWD 428
>gi|345865590|ref|ZP_08817770.1| ribonucleoside-diphosphate reductase subunit beta [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345123328|gb|EGW53228.1| ribonucleoside-diphosphate reductase subunit beta [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 396
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 194/336 (57%), Gaps = 5/336 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+++NG TDVNQL PFKY WAW+ +L++ NHW P +INM +D+ + + LT
Sbjct: 66 VNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHH--KLTL 123
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
EER + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT YQ+ +E
Sbjct: 124 EERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHCIE 183
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
++GLD+ EI+N Y + I K + + + N + L + + FA I
Sbjct: 184 TIGLDQGEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFLMAYLFFAGIF 243
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG++FY GF I AL R+ M G++E QYI+RDE +H +FGI + I +E N+
Sbjct: 244 EGVWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVLHASFGIRVAKQIMLEE-NI--AP 300
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
+ I +++ + E YA + ILG + R++AN R +QIG+ + +P
Sbjct: 301 DPQAIREMWDECEAAEDAYAGYILRDPILGYSKDDHMGQFRYVANRRARQIGLSEPYPGA 360
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PW+ E +++KE NFFET V EYQ+GG L+W+
Sbjct: 361 EATLPWLDEQANLRKEKNFFETTVTEYQTGGALNWD 396
>gi|345878372|ref|ZP_08830089.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224628|gb|EGV51014.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 464
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 194/336 (57%), Gaps = 5/336 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+++NG TDVNQL PFKY WAW+ +L++ NHW P +INM +D+ + + LT
Sbjct: 134 VNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHH--KLTL 191
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
EER + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT YQ+ +E
Sbjct: 192 EERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHCIE 251
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
++GLD+ EI+N Y + I K + + + N + L + + FA I
Sbjct: 252 TIGLDQGEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFLMAYLFFAGIF 311
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG++FY GF I AL R+ M G++E QYI+RDE +H +FGI + I +E N+
Sbjct: 312 EGVWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVLHASFGIRVAKQIMLEE-NI--AP 368
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
+ I +++ + E YA + ILG + R++AN R +QIG+ + +P
Sbjct: 369 DPQAIREMWDECEAAEDAYAGYILRDPILGYSKDDHMGQFRYVANRRARQIGLSEPYPGA 428
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
PW+ E +++KE NFFET V EYQ+GG L+W+
Sbjct: 429 EATLPWLDEQANLRKEKNFFETTVTEYQTGGALNWD 464
>gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Diplosphaera colitermitum
TAV2]
gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Diplosphaera colitermitum
TAV2]
Length = 362
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 196/331 (59%), Gaps = 5/331 (1%)
Query: 25 KQIINGHTDVN-QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++ING + L+P KY WA+D Y + ANHW P++I M +DIE W++P +T++ER
Sbjct: 26 KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+++ +G+FS A+ + +NI T +TAPE + L R A EE IH + Y++ SLG+
Sbjct: 86 IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVL-TDLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
+ E + +I +I K+EF++ L DL +N Q L +++ +F MEG
Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRRDLDLT--QPENKQLLARNMFLFGQCMEGT 203
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
FY F IL+L RQNK G ++++Y LRDES H +L+ + ENP +WT F +
Sbjct: 204 QFYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTPGFKE 263
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE-RN 321
E+ + +A+ LE + D +P +GL V F +Y+ +IA+ R++ +G+ I +N
Sbjct: 264 ELRETMREAVTLEKEFIRDCLPVNAVGLAVDEFLTYIDYIADRRLEGVGLAPISATPIKN 323
Query: 322 PFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
P PW++EM+ IKKE NFFE RV EYQ +L
Sbjct: 324 PLPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354
>gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit
[Verrucomicrobiae bacterium DG1235]
gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit
[Verrucomicrobiae bacterium DG1235]
Length = 361
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 193/335 (57%), Gaps = 8/335 (2%)
Query: 25 KQIINGHTDVN-QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K+IING + L+P KYNWA++ Y + ANHW P++I M +DIE WK+ ++E ER
Sbjct: 26 KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
++ +G+FS A+ + +NI+ +TAPE + L R A EE +H + Y++ SLG+
Sbjct: 86 IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVL---TDLKFKTGNTKNDQKLLKSLIVFACIME 200
+ E + +I +I K+EF+ L DL T+N QK K++ +F ME
Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLTI----TENKQKFAKNVFLFGQCME 201
Query: 201 GLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEF 260
G FY F IL+L RQNK G E+++Y LRDES H +L + ENP++WT EF
Sbjct: 202 GTQFYGMFGMILSLYRQNKFRGIGEMFRYTLRDESNHIELLRNLFMDLIEENPDVWTPEF 261
Query: 261 CKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER 320
E+ +AI LE + D +P +GL + F Y+ +IA+ R++ G+ + P
Sbjct: 262 KAELRDAMSEAIALEKEFIADCLPVDSIGLRKEDFVQYIDYIADRRLEGCGLDPLTPGVT 321
Query: 321 NPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
NP PW++EM+ IKKE NFFE RV EYQ +L+ E
Sbjct: 322 NPLPWLAEMMDIKKEQNFFEGRVTEYQKASSLENE 356
>gi|333984785|ref|YP_004513995.1| ribonucleoside-diphosphate reductase [Methylomonas methanica MC09]
gi|333808826|gb|AEG01496.1| Ribonucleoside-diphosphate reductase [Methylomonas methanica MC09]
Length = 387
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 201/355 (56%), Gaps = 14/355 (3%)
Query: 6 NNKKKTLKINS-FERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
+N T+ NS ++ K+++NG TD+NQL PFKY WAW +L++ NHW P EI+M
Sbjct: 42 DNAINTVGTNSSLPPVDAEQKRVVNGQTDINQLAPFKYPWAWSFFLNANRNHWTPLEISM 101
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
+D+ +++ LT ER + + L + +T+D LA NI L ++APE + Y RQ
Sbjct: 102 AQDVHDYQH--KLTPAERHVFENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQV 159
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
+EEA+HT YQ+ +E+LG+D+ EI+N Y + I K I + ++
Sbjct: 160 YEEALHTWTYQHCIETLGIDQREIYNRYRVVPEIHGK----IALANRRLHGVLQSARPLT 215
Query: 185 DQKLLK----SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNF 240
D+ L + + FA + EG +FY GF + AL R+ M G++E QYI+RDE +HC F
Sbjct: 216 DRDALHEFAMAYLFFAAVFEGSWFYNGFSPVFALQRRGLMKGTAEQLQYIMRDEVLHCAF 275
Query: 241 GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLR 300
GI ++ + ++ NL T + + Q++ +A E YA + ILG N R
Sbjct: 276 GIRVVRQL-LDEENL--TLDPQALRQMWDEAEAAETAYAGYILRDPILGYNAGLHIEQFR 332
Query: 301 FIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
F+AN R +Q+G+ + F N PW+ E +++KE NFFETRV EYQ+GG L WE
Sbjct: 333 FVANRRARQLGLSEPFSGAENVLPWLDEQANLRKEKNFFETRVTEYQTGGALVWE 387
>gi|381153009|ref|ZP_09864878.1| ribonucleotide reductase, beta subunit [Methylomicrobium album BG8]
gi|380884981|gb|EIC30858.1| ribonucleotide reductase, beta subunit [Methylomicrobium album BG8]
Length = 387
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 197/345 (57%), Gaps = 13/345 (3%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
+S I+ K+I+NG D+NQL PFKY WAW +L++ NHW P EI+M +D+ +++
Sbjct: 52 SSLPPIDAEQKRIVNGQADINQLAPFKYPWAWSFFLNANRNHWTPLEISMAQDVHDYQHK 111
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
LT ER + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT Y
Sbjct: 112 --LTPAERHVFENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTY 169
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK---- 190
Q+ +E+LG+D+ EI+N Y + I K I + ++G D+ L
Sbjct: 170 QHCIETLGIDQREIYNRYRVVPEIHGK----IALANRRLHGVLQSGRPLTDRDTLHEFAL 225
Query: 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250
+ + FA + EG +FY GF + AL R+ M G++E QYI+RDE +HC FGI ++ + +
Sbjct: 226 AYLFFAAVFEGCWFYNGFSPVFALQRRGLMKGAAEQLQYIMRDEVLHCAFGIRVVRQL-L 284
Query: 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
E NL + + +++ +A E YA + + ILG N R+IAN R +Q+
Sbjct: 285 EEENLQMDP--EALRRMWDEAEAAEAAYAGYILREPILGYNAGLHIEQFRYIANRRARQL 342
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
GI + F N PW+ E +++KE NFFETRV EYQ+GG L WE
Sbjct: 343 GIAEPFSGAANVLPWLDEQANLRKEKNFFETRVTEYQTGGALVWE 387
>gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium HTCC5015]
gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium HTCC5015]
Length = 404
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 5/331 (1%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+K+++NG D+NQL PFKY WAW+ +L++ NHW P +INM +D+ + + LT EER
Sbjct: 79 DKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDFHH--KLTLEERH 136
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L + +T+D +A NI L ++APE + Y RQ +EE++HT YQ+ +E+LGL
Sbjct: 137 VYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQVYEESLHTWTYQHCIETLGL 196
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
D+ E++N Y + I K + ++ + + L S I FA I EG +
Sbjct: 197 DQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRDELHNFLMSYIFFAGIFEGCW 256
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF I AL R+ M G++E QYI+RDE MH +FG+ + I M N+ K
Sbjct: 257 FYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGLRVARQI-MREENIQPD--PKA 313
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
+ +++ + E YA + ILG + + + RFIAN R ++ +++ FP N
Sbjct: 314 MREMWDECEAAEEGYARYLLRDPILGYSAEDHVNQFRFIANRRANKLSLEEPFPGAENAL 373
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
PW+ E +++KE NFFETRV EYQ GG L W
Sbjct: 374 PWLDEQANMRKEKNFFETRVTEYQVGGGLTW 404
>gi|421142752|ref|ZP_15602719.1| ribonucleotide-diphosphate reductase beta subunit, partial
[Pseudomonas fluorescens BBc6R8]
gi|404506069|gb|EKA20072.1| ribonucleotide-diphosphate reductase beta subunit, partial
[Pseudomonas fluorescens BBc6R8]
Length = 154
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 123/154 (79%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
+IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWKNP GLT++ERR+V
Sbjct: 1 MINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVM 60
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAYQY +ESL +DE
Sbjct: 61 RNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLAMDEG 120
Query: 147 EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTG 180
EIFN YHEI S+ K + + + ++D KF+TG
Sbjct: 121 EIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETG 154
>gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1]
gi|237878644|gb|ACR30976.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1]
Length = 337
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 190/331 (57%), Gaps = 5/331 (1%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+K+++NG D+NQL PF+Y WAW+ +LS+ NHW P EI+M D+ + + L+ E+
Sbjct: 11 DKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHH--RLSPAEKH 68
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ + L + +T+D LA NI L +TAPE + Y RQ +EEA+HT YQ+ +ESLGL
Sbjct: 69 VFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIESLGL 128
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
D+ EI+N Y + I K ++ + + + + + + FA + EG +
Sbjct: 129 DQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAAVFEGTW 188
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF + AL R+ M +++ +QYI+RDE +HC FGI +I + +E +L
Sbjct: 189 FYNGFSPVFALQRRGLMKATAQQFQYIMRDEVLHCGFGIRVIRQL-LEEEHLRLDPHA-- 245
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
++Q++ +A E YA+ + ILG + + RFIAN R Q+ + FP N
Sbjct: 246 VQQIWEEAEAAERAYAQYILRDPILGYSAELHCEQFRFIANRRATQLSMPAPFPGATNAL 305
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
PW+ E +++KE NFFETRV +YQSGG LDW
Sbjct: 306 PWLDEQANLRKEKNFFETRVTDYQSGGALDW 336
>gi|294055010|ref|YP_003548668.1| ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
DSM 45221]
gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
DSM 45221]
Length = 360
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 191/328 (58%), Gaps = 5/328 (1%)
Query: 27 IING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
IING T ++P KY WA+D Y + NHW P++I MQ+D+ELW++ L++ ER ++
Sbjct: 28 IINGKDTMFFNILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSA-DLSDAERWII 86
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE 145
K +G+FS A+ + +NI T +TAPE + L R A EE IH + Y++ SLG++
Sbjct: 87 KMAIGYFSAAEGIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINP 146
Query: 146 LEIFNAYHEIKSIRDKDEFLIPFIDVLT-DLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
E + +I +I K F++ L D+ T T + Q K++ +F MEG F
Sbjct: 147 HECEAMFEDIDTIERKTAFVVNNSRGLRRDMDLTT--TADKQAFTKNMFLFGQCMEGTQF 204
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y F +L+L RQNK G ++++Y LRDES H +LI + EN ++WT EF +E+
Sbjct: 205 YGLFGMVLSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLIMDLIEENEDVWTPEFREEL 264
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFP 324
L +A+ LE + D +P +GL+ F Y+ +IA+ R++ +G+ + P NPFP
Sbjct: 265 RDLMREAVTLEKDFIRDCLPVNSVGLSADEFCQYIDYIADRRLEGVGLAPLSPGVDNPFP 324
Query: 325 WMSEMIHIKKESNFFETRVMEYQSGGTL 352
W++EM+ IKKE NFFE RV EYQ L
Sbjct: 325 WLAEMMDIKKEQNFFEGRVTEYQKASAL 352
>gi|421138248|ref|ZP_15598317.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BBc6R8]
gi|421139872|ref|ZP_15599898.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BBc6R8]
gi|404508997|gb|EKA22941.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BBc6R8]
gi|404510579|gb|EKA24480.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BBc6R8]
Length = 175
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 136/175 (77%)
Query: 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNF 240
+ D++LL++L+ + C++EG+FFY GF QIL++GR+NKM G +E +QYILRDESMH NF
Sbjct: 1 TVETDKELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNF 60
Query: 241 GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLR 300
GID+IN IK+ENP+LW E +E Q+ L+ +LE YA DTMP+G+LG+N + YL+
Sbjct: 61 GIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLK 120
Query: 301 FIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
FIAN R+ QIG+K+ +P NPFPWMSE++ +KKE NFFETRV+EYQ+GG L W+
Sbjct: 121 FIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 175
>gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
14684]
gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
14684]
Length = 364
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 190/329 (57%), Gaps = 4/329 (1%)
Query: 26 QIINGHTDVN-QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
+++ G + L+P +Y WA++ Y + ANHW P+++ M +DIE W++ L+E +R +
Sbjct: 30 RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
V+ +G+FS A+ + +NI+ +TA E + L R A EE IH + Y++ SLG+D
Sbjct: 90 VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLT-DLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E + +I +IR K+ F+ L DL + + ++ L K++ +F MEG
Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALRRDLDMQ--DPRSVALLAKNIFLFGQCMEGTQ 207
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY F +L+L RQ K+ G +++Y LRDES H L+ + ENP +WT EF E
Sbjct: 208 FYGLFGMVLSLYRQGKLPGIGTMFRYTLRDESNHIELFRRLLRELVAENPEIWTAEFRDE 267
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
+ +L +A+ LE + +D +P +GLN F Y+ +IA+ R++ +G++ + P NP
Sbjct: 268 LRELMREAVALEQRFIDDCLPVEGVGLNADEFAQYIDYIADRRLEGVGLEPLKPGVENPL 327
Query: 324 PWMSEMIHIKKESNFFETRVMEYQSGGTL 352
PW++E++ ++KE NFFE RV EYQ L
Sbjct: 328 PWLAELMDVRKEQNFFEGRVTEYQKASAL 356
>gi|373852169|ref|ZP_09594969.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV5]
gi|391231104|ref|ZP_10267310.1| ribonucleotide reductase, beta subunit [Opitutaceae bacterium TAV1]
gi|372474398|gb|EHP34408.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV5]
gi|391220765|gb|EIP99185.1| ribonucleotide reductase, beta subunit [Opitutaceae bacterium TAV1]
Length = 362
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 195/330 (59%), Gaps = 5/330 (1%)
Query: 26 QIINGHTDVN-QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
++ING + L+P KY WA+D Y + ANHW P++I M +DIE W++ ++++ER +
Sbjct: 27 RVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDERAVSDQERWI 86
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
++ +G+FS A+ + +NI T +TAPE + L R A EE IH + Y++ SLG++
Sbjct: 87 IRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGIN 146
Query: 145 ELEIFNAYHEIKSIRDKDEFLIP-FIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E + +I +I K+EF+ ++ D+ +N Q L +++ +F MEG
Sbjct: 147 PHECEAMFEDIPTIVRKNEFVTKNSRELRRDIDLT--QPENKQLLARNMFLFGQCMEGTQ 204
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY F IL+L RQNK G ++++Y LRDES H +L+ + ENP +WT+ F +E
Sbjct: 205 FYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTSGFKEE 264
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE-RNP 322
+ + +A+ LE + D +P +GL V F +Y+ +IA+ R++ +G+ + +NP
Sbjct: 265 LRETMREAVALEKEFIRDCLPVNAVGLAVDEFLNYIDYIADRRLEGVGLAPLSGGTIKNP 324
Query: 323 FPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
PW++EM+ IKKE NFFE RV EYQ +L
Sbjct: 325 LPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354
>gi|440738465|ref|ZP_20917997.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BRIP34879]
gi|440381055|gb|ELQ17600.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas fluorescens BRIP34879]
Length = 234
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/147 (68%), Positives = 116/147 (78%)
Query: 15 NSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
S R+ K++IN D+NQLVPFKY+WAW +YL CANHWMPQE+NM DI LWK P
Sbjct: 76 GSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKTP 135
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
GLT++ERR+V RNLGFFSTADSL ANN+VL YR IT PECRQY+LRQAFEEAIHTHAY
Sbjct: 136 EGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAY 195
Query: 135 QYIVESLGLDELEIFNAYHEIKSIRDK 161
QY +ESL +DE EIFN YHEI S+ K
Sbjct: 196 QYCIESLAMDEGEIFNMYHEIPSVAKK 222
>gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium
spinosum DSM 4136]
Length = 361
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 188/334 (56%), Gaps = 12/334 (3%)
Query: 25 KQIINGHTDVN-QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++ING + L+P KY WA+D Y ANHW P++I MQ+D+E W++ + E ER
Sbjct: 26 KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
++ +G+FS A+ + +NI +TAPE + L R A EE IH + Y++ SLG+
Sbjct: 86 IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLT-DLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
+ E + +I +I K+ F+ + L DL +N + L K++ VF MEG
Sbjct: 146 NPHECEAMFEDIPTIVKKNAFVTRSSNALRRDLDLT--QIENKRLLAKNIFVFGQCMEGT 203
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHC----NFGIDLINTIKMENPNLWTT 258
FY F IL+L RQ K G +++Y LRDES H N +DLI+ ENP +WT
Sbjct: 204 QFYGLFGMILSLYRQGKFPGIGTMFRYTLRDESNHIKVFRNLFMDLID----ENPEIWTP 259
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
EF +E+ +L +A+ LE + D +P +GL F+ Y+ FIA+ R+ +G+ + P
Sbjct: 260 EFREELVELMKEAVALEKEFIRDCLPVAAVGLTAGEFELYIDFIADRRLASVGLPALTPG 319
Query: 319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
NP PW++EM I+KE NFFE V +YQ +L
Sbjct: 320 IVNPLPWLAEMQDIRKEQNFFEGTVTDYQKASSL 353
>gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
PS]
gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
PS]
Length = 374
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 198/343 (57%), Gaps = 8/343 (2%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R + + +II G DV Q +P KY +R+L++ N W+P EI M D W +
Sbjct: 35 KRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMGEDKLQWNTGL- 93
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LTE E L K N+ + + +D+L +N+ +HITA E RQY Q EE+ H +Y +
Sbjct: 94 LTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIMEESNHIESYLF 153
Query: 137 IVESLGLDEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
I+ES GLDE +IFN Y E+ ++ +K + + F + + + + G + ++ LL+ LI
Sbjct: 154 ILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTLEANRALLEDLI 213
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
+ I E LFF +GF QI AL R+ K+ +++ Y YI RDE++H + G+ LI I EN
Sbjct: 214 SY-YIFEYLFFPLGFSQIFALARKGKLRNTAQQYSYIWRDENLHSSNGLWLIKQIIQENH 272
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPK-GILGLNVKTFKSYLRFIANCRMKQIGI 312
LW + + + +A++LE YA +MP+ GI+GL VKT+ + F+A+ K +GI
Sbjct: 273 ELWDSTMQERSRAIVSEAVKLETDYAHASMPEGGIVGLPVKTYIKFSHFVADNICKNLGI 332
Query: 313 KQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
K +F +P PW+SE + E NFFE RV EYQ+G L W+
Sbjct: 333 KPLFRVREHPMPWISEY-ELNHEVNFFEGRVREYQTGSQLTWD 374
>gi|115525181|ref|YP_782092.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
gi|115519128|gb|ABJ07112.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
Length = 223
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/184 (54%), Positives = 128/184 (69%)
Query: 172 LTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYIL 231
L D F TG + D+ L+ L+ F + EG++FY GF QIL+LGR+NKM+G +E YQYIL
Sbjct: 40 LDDPTFVTGTVEADRAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYIL 99
Query: 232 RDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLN 291
RDES+H NFGID+IN IK+ENP LWT F +E+ + +A ELE Y DTMP+G GLN
Sbjct: 100 RDESIHLNFGIDIINQIKIENPELWTAGFQEELRGMLREAAELEAAYCRDTMPRGFFGLN 159
Query: 292 VKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGT 351
+ Y+ FI N R Q+G+ IF NPFPWMSE + +KKE NFFETRV+EYQ+GG
Sbjct: 160 AALCEQYMHFITNRRCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGA 219
Query: 352 LDWE 355
L W+
Sbjct: 220 LTWD 223
>gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa]
Length = 146
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/120 (79%), Positives = 110/120 (91%)
Query: 16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
+ +R+N +K+IIN TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P
Sbjct: 24 THKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPN 83
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLTE+ERR++KRNLGFF TADSLAANNIVLGTYRHITAPECRQ+LLRQAFEEAIHTHAYQ
Sbjct: 84 GLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 143
>gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
Ellin428]
gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
Ellin428]
Length = 390
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 191/338 (56%), Gaps = 9/338 (2%)
Query: 19 RINKINKQIINGHTDVN-QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
R K++ING ++P KY+ A+ Y ANHW P I+M RD + W N L
Sbjct: 49 RARLAGKRVINGLRSAELNVLPLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQW-NTGAL 107
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+ +ER +++ +G+FS A+ + ++++ ++TA E + LR EE+IH + +I
Sbjct: 108 SPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIHMDSLLHI 167
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFL---IPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
+ SL +D E+ + +I S++ K+ F+ +P + + DL T N QK K++
Sbjct: 168 IGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELKMGIDLT----QTANKQKFAKAIFG 223
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
+MEG FY F IL+L RQNKM G +++QY LRDES H G ++ + ENP+
Sbjct: 224 ITQVMEGTQFYALFAMILSLHRQNKMTGIGQMFQYTLRDESNHIELGRYILTQLIAENPD 283
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
+WT EF E+ + + +ELE + D +P+ +G+ F +Y+ + A+ R+ + +
Sbjct: 284 IWTPEFRAELVEFMREGVELEKEFVRDCLPEDGVGMTQADFLTYVEYNADRRLAGLDLPA 343
Query: 315 IFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
+ + NPF W+ E+I ++KE NFFETRV EYQ+ G+L
Sbjct: 344 LSGVKTNPFAWLDEVIFLRKEKNFFETRVTEYQTSGSL 381
>gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
DSM 12885]
gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
DSM 12885]
Length = 336
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/315 (34%), Positives = 184/315 (58%), Gaps = 4/315 (1%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
QL P +Y WA+ N W P+EI + D+ W+ + LT++ERR V+ LGFF+
Sbjct: 22 QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERRAVELLLGFFNPM 79
Query: 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155
+SL +N+V+ Y +T PE R YL RQ +EEA HT A++Y++++L +D +F A+ ++
Sbjct: 80 ESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRDV 139
Query: 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
+IR K+ F L ++ + Q L++LI + ++EG+FFY GF+
Sbjct: 140 PAIRAKEAFQQELTRQLL-VRPDVSTLEGRQAFLRNLIGYYIVLEGVFFYGGFLFAYTFR 198
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R+N + G + L ++L+DES+H +FGI LI T+ E+P L T EF +E++ L L+A+ELE
Sbjct: 199 RRNLLKGLATLVDWVLKDESLHLSFGIHLITTLLEEHPELMTPEFAREVKGLILRAVELE 258
Query: 276 YYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
Y +P+ ILG++ +Y+ ++ + R+ ++G+ F NP WM+ + + +
Sbjct: 259 RDYNRALLPRPILGVSADYLNAYIEYVTDRRLDELGLGPHFGTP-NPAQWMATEVDVPEI 317
Query: 336 SNFFETRVMEYQSGG 350
NFFE R + Y+
Sbjct: 318 VNFFEARNIHYEVAA 332
>gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
michiganensis subsp. sepedonicus]
gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter
michiganensis subsp. sepedonicus]
Length = 331
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 181/315 (57%), Gaps = 4/315 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y WA D Y + AN W P EI + DI +K +T+EER + + +F+ +
Sbjct: 15 LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAITFLMSYFNPNE 71
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y +I APEC YL +Q +EEA H +++Y++E+ +D +N++ +I
Sbjct: 72 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+EF + FI +T+ T+ + +++L+ + I+EG++FY GF+ L+ +
Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAYNVILEGIWFYSGFMVSLSFRQ 191
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +I+RDES+H FGI+LI T+ ENP+L T EF EI+Q+ L A+E+E
Sbjct: 192 RNLLRNFGSLMDWIVRDESLHLKFGINLILTVLEENPDLQTEEFAAEIKQMILDAVEMEE 251
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P GILGLN Y++++A+ R++++G + + NP WM+ +
Sbjct: 252 QYNRDLLPNGILGLNANYINQYVKYLADRRLEELGFEAEYKV-SNPAKWMATANDTLQLV 310
Query: 337 NFFETRVMEYQSGGT 351
NFFE+ Y+S +
Sbjct: 311 NFFESTNTSYESNAS 325
>gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium
roseum DSM 5159]
gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium
roseum DSM 5159]
Length = 328
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 187/317 (58%), Gaps = 10/317 (3%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
+L P + WA+ + N W P+E+ + D+ W L++EERR V+ LGFF+
Sbjct: 15 ELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHE--RLSDEERRAVEMFLGFFNPM 72
Query: 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155
+SL N++L YR +TAPE R YL RQA+EEA H A++Y++++L LD +F + E
Sbjct: 73 ESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPLDRERVFGLHVEH 132
Query: 156 KSIRDKDEFLIPFID---VLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
++ K+ F + V D++ + + Q+L+++L+ + I+EG+FFY GF L
Sbjct: 133 PAVAAKELFQRQLAEQWLVTPDVE----SVEGLQRLVRNLVGYFVILEGIFFYSGFALAL 188
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
A ++N + G + ++L+DES+H +FGI LI TI E+P + + F +++ +L L+A+
Sbjct: 189 AFRQRNLLRGLCTIVDWVLKDESLHLSFGIHLITTILEEHPEIMSAAFGRQLRELILRAV 248
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
ELE Y +P+ ++GL+ Y+R+IA+ R++++G+ F E NP WM + +
Sbjct: 249 ELEEAYNRAVLPEPLIGLDADVLNRYVRYIADRRLEELGLPIAFG-EPNPLRWMVAQVDM 307
Query: 333 KKESNFFETRVMEYQSG 349
+ NFFE R + Y+ G
Sbjct: 308 PEIVNFFEARNIHYEVG 324
>gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 329
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 180/314 (57%), Gaps = 4/314 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY WA D Y + AN W P EI + DI +K +T+EER V + +F+ +
Sbjct: 14 LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y +I A E YL +Q +EEA H +++Y++E+ +D + +N++ ++
Sbjct: 71 LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+EF + FI +T+ T+ Q +++LI + I+EG++FY GF+ L+ +
Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAYNVILEGIWFYSGFMVALSFRQ 190
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FGI+LI T+ ENP+L T EF EI+Q+ L A+E+E
Sbjct: 191 RNLLRNFGSLIDWVVRDESLHLKFGINLILTVLEENPDLQTPEFAAEIKQMILDAVEMEE 250
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P GILGLN Y++++A+ R++++G + + NP WM+ +
Sbjct: 251 QYNRDLLPGGILGLNANYINQYVKYLADRRLEELGFEAEYKV-SNPAKWMATANDTLELV 309
Query: 337 NFFETRVMEYQSGG 350
NFFE+ Y+S
Sbjct: 310 NFFESTNTSYESNA 323
>gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
39149]
gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
39149]
Length = 344
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 189/319 (59%), Gaps = 11/319 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DR+ + N W +E+++ D+ + L+ ER LV R + FF+T D
Sbjct: 24 LRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDL---ADLARLSPAERHLVSRLVAFFATGD 80
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ DE E F A+ I+
Sbjct: 81 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDERERFAAFAAIE 140
Query: 157 ---SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
SIR K EF +ID + +L+ T+ D++ L +LI FA +EGLFFY F +
Sbjct: 141 NIPSIRRKAEFCFRWIDSIFELR--ELKTREDRRAFLLNLICFAACIEGLFFYGAFAYVY 198
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F D+++T++ E P+L+ E +++ ++ +A+
Sbjct: 199 FLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRHEEPDLFDDELARQVREMLAEAV 258
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +AED + +G+ GL++ + YL+ +A+ R+ Q+GI ++ NPF +M E+ +
Sbjct: 259 ECEAQFAEDLLEQGVSGLSLDDMRQYLQHVADRRLAQLGIAPLYG-SANPFAFM-ELQDV 316
Query: 333 KKESNFFETRVMEYQSGGT 351
++ SNFFE RV YQ G T
Sbjct: 317 QELSNFFERRVSAYQVGVT 335
>gi|410582856|ref|ZP_11319962.1| ribonucleotide reductase, beta subunit [Thermaerobacter
subterraneus DSM 13965]
gi|410505676|gb|EKP95185.1| ribonucleotide reductase, beta subunit [Thermaerobacter
subterraneus DSM 13965]
Length = 336
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 181/315 (57%), Gaps = 4/315 (1%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
QL P +Y WA+ N W P+EI + D+ W+ + LT++ERR V+ LGFF+
Sbjct: 22 QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERRAVELLLGFFNPM 79
Query: 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155
+SL +N+V+ Y +T PE R YL RQ +EEA HT A++Y++++L +D +F A+ +
Sbjct: 80 ESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRNV 139
Query: 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
+IR K+ F L ++ + Q L++LI + ++EG+FFY GF+
Sbjct: 140 PAIRAKEAFQQELTRQLL-VRPDVSTLEGRQAFLRNLIGYYIVLEGVFFYGGFLFAYTFR 198
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R+N + G + L ++L+DES+H +FGI LI + E+P L T F +E++ L L+A+ELE
Sbjct: 199 RRNLLKGLATLVDWVLKDESLHLSFGIHLITALLEEHPELMTPAFAREVKGLILRAVELE 258
Query: 276 YYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
Y +P+ ILG++ +Y+ ++ + R+ ++G+ F NP WM+ + + +
Sbjct: 259 RDYNRALLPRPILGVSADYLNAYVEYVTDRRLDELGLGPHFGTP-NPAKWMATEVDVPEI 317
Query: 336 SNFFETRVMEYQSGG 350
NFFE R + Y+
Sbjct: 318 VNFFEARNIHYEVAA 332
>gi|443290856|ref|ZP_21029950.1| Ribonucleoside-diphosphate reductase [Micromonospora lupini str.
Lupac 08]
gi|385886411|emb|CCH18024.1| Ribonucleoside-diphosphate reductase [Micromonospora lupini str.
Lupac 08]
Length = 345
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 185/318 (58%), Gaps = 9/318 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DR+ ++ N W +E+++ D+ L+ ER LV R + FF+T D
Sbjct: 25 LRPMRYPHFFDRFRAAIRNTWTVEEVDLHADLADLDK---LSPAERHLVSRLVAFFATGD 81
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ DE E F A+ I+
Sbjct: 82 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDETERFAAFAAIE 141
Query: 157 ---SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
SIR K EF +ID L +L+ + + + + L +LI FA +EGLFFY F +
Sbjct: 142 NIPSIRRKAEFCFRWIDSLGELR-ELRTSDDRRAFLLNLICFAACIEGLFFYGAFAYVYF 200
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDESMH F D+++T++ E P+L+ + ++ Q+ +A+E
Sbjct: 201 LRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDDDLADQVRQMLTEAVE 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + +G+ GL + + YL+ +A+ R+ Q+GI + NPF +M E+ ++
Sbjct: 261 CEVQFAEDLVGQGVPGLTLADMREYLQHVADRRLVQLGIAPHYG-SANPFAFM-ELQDVQ 318
Query: 334 KESNFFETRVMEYQSGGT 351
+ SNFFE RV YQ G T
Sbjct: 319 ELSNFFERRVSAYQVGVT 336
>gi|400976879|ref|ZP_10804110.1| ribonucleotide-diphosphate reductase subunit beta [Salinibacterium
sp. PAMC 21357]
Length = 332
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 180/322 (55%), Gaps = 4/322 (1%)
Query: 30 GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNL 89
G D L P KY WA D Y + AN W P EI + DI +K +T+EER V +
Sbjct: 7 GLQDGLLLKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAVTFLM 63
Query: 90 GFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIF 149
+F+ + L + G Y +++A EC YL +Q +EEA H +++Y++E+ +D +
Sbjct: 64 SYFNPNELLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAY 123
Query: 150 NAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFV 209
N++ ++ S+ K+EF + +I +T+ + Q +++L+ + ++EG++FY GF+
Sbjct: 124 NSHVDVPSMARKEEFEMKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFM 183
Query: 210 QILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFL 269
L+ ++N + L +++RDES+H FGI+LI T+ ENP + T EF EI Q+ L
Sbjct: 184 VALSFRQRNLLRNFGSLMDWVVRDESLHLKFGINLILTVMEENPEILTEEFADEIRQMIL 243
Query: 270 KAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
A+E+E Y D +P GILGLN Y++++A+ R++++G + NP WM+
Sbjct: 244 DAVEMEEAYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFDAHYKV-SNPAKWMATA 302
Query: 330 IHIKKESNFFETRVMEYQSGGT 351
+ NFFE+ Y++ +
Sbjct: 303 NDTLELVNFFESTNTSYEANAS 324
>gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine
actinobacterium PHSC20C1]
gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine
actinobacterium PHSC20C1]
Length = 332
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 181/322 (56%), Gaps = 4/322 (1%)
Query: 30 GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNL 89
G D L P KY WA D Y + AN W P EI + DI +K +T+EER V +
Sbjct: 7 GLQDGLLLKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAVTFLM 63
Query: 90 GFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIF 149
+F+ + L + G Y +++A EC YL +Q +EEA H +++Y++E+ +D +
Sbjct: 64 SYFNPNELLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAY 123
Query: 150 NAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFV 209
N++ +I S+ K+EF + +I +T+ + Q +++L+ + ++EG++FY GF+
Sbjct: 124 NSHIDIPSMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFM 183
Query: 210 QILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFL 269
L+ ++N + L +++RDES+H FGI+LI T+ ENP + T EF EI Q+ L
Sbjct: 184 VALSFRQRNLLRNFGSLMDWVVRDESLHLKFGINLILTVLEENPEIQTEEFADEIRQMIL 243
Query: 270 KAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
A+E+E Y D +P GILGLN Y++++A+ R++++G + + NP WM+
Sbjct: 244 DAVEMEEAYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFEPHYKV-TNPAKWMATA 302
Query: 330 IHIKKESNFFETRVMEYQSGGT 351
+ NFFE+ Y++ +
Sbjct: 303 NDTLELVNFFESTNTSYEANAS 324
>gi|328950373|ref|YP_004367708.1| ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
DSM 14884]
gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
DSM 14884]
Length = 332
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 181/319 (56%), Gaps = 12/319 (3%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
+L P + WA+ N W P+E+ + D+ W LTEEER LGFF+
Sbjct: 17 ELFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHE--KLTEEERHAASLLLGFFNPM 74
Query: 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155
+SL N+VL + ++ APE R YL RQ +EEA HT A++Y++++L +D ++F A+ E+
Sbjct: 75 ESLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLPVDREKVFAAHREV 134
Query: 156 KSIRDKDEFLIPFIDVLT-----DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQ 210
++R K+ F L DL+ ++G + LLK+L+ + ++EG+FFY GF+
Sbjct: 135 PAVRAKEAFQTALTQALLQQHPLDLETRSGQ----EALLKNLVGYFVVLEGIFFYAGFLL 190
Query: 211 ILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270
L+ R+N + G + + L+DES+H +FG+ LI E + T +E+ L L+
Sbjct: 191 ALSWRRRNLLKGLGAIIDWTLKDESLHLSFGLHLITGFLEEYSEVMTPRLAREVRGLILE 250
Query: 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMI 330
A++LE Y + +P+ ILGL+ +T +Y+ ++A+ R++++G++ F NP WM+ +
Sbjct: 251 AVQLERAYNQALLPRPILGLSAETLNAYVEYVADRRLEELGLEAAFGTP-NPAKWMATEV 309
Query: 331 HIKKESNFFETRVMEYQSG 349
+ + NFFE Y+ G
Sbjct: 310 DVPEIVNFFEAVNTSYEVG 328
>gi|374849440|dbj|BAL52456.1| amino acid adenylation [uncultured gamma proteobacterium]
Length = 357
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 190/360 (52%), Gaps = 17/360 (4%)
Query: 1 MSIKLNNKKKTLKINSFERINKIN----KQIINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+ IK + + + + +R ++ K+++ G + + P KY WAWD YL S N
Sbjct: 10 IDIKTSRRSLAMPAVAADRAAELKVLAEKRLVGGSRLTSNIAPIKYRWAWDAYLKSQRNF 69
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W+P EI M D+ + L++ ER +TAD+L N+ L Y ITAPE
Sbjct: 70 WLPTEIGMGEDLMALRK---LSDSERHTFFTTFATLTTADALHQRNLALAVYERITAPEV 126
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ Q +E IH+ +YQ+I+ESL DE EI+ Y ++ IR K E+ + L+
Sbjct: 127 GMAVIAQMHQETIHSMSYQHIIESLNFDEDEIYLLYQKVPEIRAKFEYSNAKTE---GLQ 183
Query: 177 FKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESM 236
+ G+ K+ + L + I EG++F GF I ++ R+ M+ + E QYI RDES
Sbjct: 184 GQNGDLKD---YARGLFFYYMIFEGVWFMAGFCPIFSMQRRRLMVRTGEQLQYIARDESG 240
Query: 237 HCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFK 296
H FG LI + ENP E E L +A+ELE YA T+ K +LG ++K
Sbjct: 241 HVAFGRALIWALWQENPESRLEE--SEAHALMREALELEEAYAAYTV-KPMLGYDLKLHL 297
Query: 297 SYLRFIANCRMKQIGIKQIFPY-ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
++R++AN R+ +G ++P E PW E I +KE NFFETRV EYQSGG L WE
Sbjct: 298 RHVRYLANRRLLDLGFSPLYPASEAESLPWWEEQIGFRKEKNFFETRVTEYQSGGALSWE 357
>gi|386826668|ref|ZP_10113775.1| ribonucleotide reductase, beta subunit [Beggiatoa alba B18LD]
gi|386427552|gb|EIJ41380.1| ribonucleotide reductase, beta subunit [Beggiatoa alba B18LD]
Length = 430
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 187/335 (55%), Gaps = 8/335 (2%)
Query: 26 QIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
+II G DV Q +P KY +L++ N W P +I M D W N LTEEE +
Sbjct: 99 KIIGGQGYDVRQPIPLKYPNIRQHFLNARNNFWTPNDIAMGDDKMQW-NTGKLTEEEAWM 157
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
K N+ + + +D+L +N+ ITA E RQYL Q EEA H +Y +I+ES GLD
Sbjct: 158 FKCNISYLTASDNLVPDNLDNAILAQITANEMRQYLRWQMAEEANHIESYFFILESFGLD 217
Query: 145 ---ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +IFN Y ++ + K + + F + + + G+ + ++ LL+ LI + I E
Sbjct: 218 VEGQGQIFNLYQQVPELTAKLNWNLTFTNNVVNCDAPLGSREANRALLEDLISY-YIFEY 276
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
LFF +GF Q+ AL RQ K+ +++ YQYI RDE++H G LI I ENP LW
Sbjct: 277 LFFPLGFSQVFALARQGKLRNTAQQYQYIWRDENLHAINGRWLIRQIIKENPELWDKAMR 336
Query: 262 KEIEQLFLKAIELEYYYAEDTMPK-GILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER 320
+ + +A+ LE + + TMP GI GL++ ++ SY R +AN + +G+ +F +
Sbjct: 337 ERARAIINEAVALETNFGKATMPNGGIPGLSINSYTSYARLMANNICQALGLDLLFDIKE 396
Query: 321 NPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P PW+SE +K+E NFFE RV +Y+ G L WE
Sbjct: 397 HPMPWLSEY-EMKQEVNFFEGRVRDYRVGSDLKWE 430
>gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
11B]
gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
11B]
Length = 348
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 183/316 (57%), Gaps = 9/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++R+ ++ N W +E+++ D+ + L+ E LVKR + FF+T D
Sbjct: 28 LRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLADLRK---LSPAEHHLVKRLVAFFATGD 84
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE---LEIFNAYH 153
++ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ DE E F A
Sbjct: 85 TIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYITDERERAEAFAAIE 144
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + DL+ + + + L +LI FA +EGLFFY F +
Sbjct: 145 NIPSIKRKADFCFRWIDSIFDLR-ELRTAADRRSFLLNLICFAACIEGLFFYGAFAYVYF 203
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDESMH F D+I+T++ E P L+ E ++ ++ +A++
Sbjct: 204 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVIDTVRREEPELFDDELARQAREMLAEAVD 263
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + +G+ G+++ +SYL +A+ R Q+G++ I+ NPF +M E+ ++
Sbjct: 264 CETQFAEDLLGQGVPGMSLADMRSYLEHVADRRCVQLGLEPIYG-SPNPFTFM-ELQDVQ 321
Query: 334 KESNFFETRVMEYQSG 349
+ SNFFE RV YQ G
Sbjct: 322 ELSNFFERRVAAYQIG 337
>gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM
20547]
gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM
20547]
Length = 365
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 180/316 (56%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ + + N W +EI++ D+ N L+ ER LV R + FF+T D
Sbjct: 44 LRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLADLHNK--LSPAERHLVSRLVAFFATGD 101
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY---H 153
++ ANN+VL Y HI +PE R YL RQ FEEA+H Y ++++ DE E F A+
Sbjct: 102 TIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAVE 161
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K EF +ID + +L + + ++ L +LI F +EGLFFY F +
Sbjct: 162 NIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICFGTCIEGLFFYGAFAYVYF 220
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDESMH F +++ T++ E P+L+ E ++ Q+ ++A++
Sbjct: 221 LRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRSEEPDLFDAEMAGQVRQMLMEAVD 280
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ GL+V ++YL +A+ R Q+G+ +I+ +NP +M E+ ++
Sbjct: 281 AEAQFAEDLLGMGVAGLSVADMRAYLENVADRRAVQLGMPEIYG-TKNPLAFM-ELQDVQ 338
Query: 334 KESNFFETRVMEYQSG 349
+ SNFFE RV YQ G
Sbjct: 339 ELSNFFERRVSAYQVG 354
>gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
44928]
gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
44928]
Length = 331
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 188/324 (58%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DRY + N W +E+++ D+ L+ ER LV R + FF+T D
Sbjct: 11 LRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLTDLDR---LSAAERHLVSRLVAFFATGD 67
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE---LEIFNAYH 153
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ DE E F A
Sbjct: 68 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERTEAFAAVE 127
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K EF +ID L +L+ + + ++ + L +LI FA +EGLFFY F +
Sbjct: 128 NIPSIRRKAEFCFRWIDSLGNLQ-RLESREDRRAFLLNLICFAACIEGLFFYGAFAYVYF 186
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDESMH F D+++T++ E P+L+ + +++ ++ +A+E
Sbjct: 187 LRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDEKMAQQVREMLAEAVE 246
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D + G+ GL V ++YL +A+ R++Q+G++ ++ NP +M E+ ++
Sbjct: 247 CETQFAGDLLGGGVSGLPVADMRAYLEHVADRRLEQLGLEPMYG-TANPLGFM-ELQDVQ 304
Query: 334 KESNFFETRVMEYQ--SGGTLDWE 355
+ SNFFE RV YQ GG++ ++
Sbjct: 305 ELSNFFERRVSAYQVAVGGSVSFD 328
>gi|386845602|ref|YP_006263615.1| ribonucleoside-diphosphate reductase subunit beta [Actinoplanes sp.
SE50/110]
gi|359833106|gb|AEV81547.1| ribonucleoside-diphosphate reductase beta chain [Actinoplanes sp.
SE50/110]
Length = 331
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 186/318 (58%), Gaps = 9/318 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY +DR+ + N W +E+++ D+ + L++ E+ LV R + FF+T D
Sbjct: 11 LRPMKYPHFFDRFKDAIKNTWTVEEVDLHSDL---ADLAVLSDAEKHLVSRLVAFFATGD 67
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ DE E F A+ I+
Sbjct: 68 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEAERFEAFAAIE 127
Query: 157 ---SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
SI K EF +ID + DL+ + ++ + L ++I FA +EGLFFY F +
Sbjct: 128 NIPSIARKAEFCFKWIDSVFDLR-RLETREHRRAFLLNVICFAACIEGLFFYGAFAYVYF 186
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDESMH F D+++ ++ E P+L+ E +++ + +A+E
Sbjct: 187 LRSRGVLQGLASGTNWVFRDESMHMAFAFDVVDQVRREEPDLFDAEMQQQVRDMLAEAVE 246
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D + +G+ G+++ + YL+ +A+ R++ +GI ++ +NPF +M E+ ++
Sbjct: 247 CEVQFAADLLEQGVSGMSLADMREYLQHVADRRLQVLGIAPVYG-SKNPFAFM-ELQDVQ 304
Query: 334 KESNFFETRVMEYQSGGT 351
+ SNFFE RV YQ G T
Sbjct: 305 ELSNFFERRVSAYQVGVT 322
>gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola
CNS-205]
gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola
CNS-205]
Length = 350
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 186/317 (58%), Gaps = 11/317 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DR+ + N W +E+++ D+ + L+ ER LV R + FF+T D
Sbjct: 30 LRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDL---ADLAKLSPAERHLVSRLVAFFATGD 86
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY---H 153
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ DE E F A+
Sbjct: 87 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKERFAAFAAVE 146
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SI K EF +ID + +L+ T+ D++ L +LI FA +EGLFFY F +
Sbjct: 147 NIPSIARKAEFCFRWIDSIFELR--ELRTRADRRAFLLNLICFAACIEGLFFYGAFAYVY 204
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F D+++TI+ E P+L+ + ++I+ + +A+
Sbjct: 205 FLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTIRAEEPDLFDADLERQIKDMVTEAV 264
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+ E +AED + +G+ GL++ + YL+ +A+ R+ +GI I+ +NPF +M E+ +
Sbjct: 265 DCEAQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPIYG-SQNPFAFM-ELQDV 322
Query: 333 KKESNFFETRVMEYQSG 349
++ SNFFE RV YQ G
Sbjct: 323 QELSNFFERRVSAYQVG 339
>gi|358457765|ref|ZP_09167981.1| Ribonucleoside-diphosphate reductase [Frankia sp. CN3]
gi|357079045|gb|EHI88488.1| Ribonucleoside-diphosphate reductase [Frankia sp. CN3]
Length = 331
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/314 (35%), Positives = 173/314 (55%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y +DRY ++ N W +E+++ D+ L+ ER LV R + FF+T D
Sbjct: 11 LRPMSYPAFYDRYRAAIRNTWTVEEVDLHSDLADLHR---LSPAERHLVNRLVAFFATGD 67
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
++ ANN+VL YRHI APE R YL RQ FEEA+H Y ++++ D E F A
Sbjct: 68 TIVANNLVLNLYRHINAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDADERAQAFAAVE 127
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ SIR K +F +ID L L + + + L +LI FA +EGLFFY F +
Sbjct: 128 NVPSIRAKAQFCFRWIDTLGGLD-QLSTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 186
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDESMH F +D++ TI+ + P+L EF + Q+ +A++
Sbjct: 187 LRSRGLLHGLASGTNWVFRDESMHMEFALDVVRTIRAQEPDLVDGEFEASVRQMLAEAVD 246
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D + G+ G+ V ++YL +A+ R+ Q+G +F NPF ++ E+ ++
Sbjct: 247 AETEFARDLLAGGVAGMTVVDMRAYLEHVADRRLVQLGFAPMFG-SANPFSFL-ELQDVQ 304
Query: 334 KESNFFETRVMEYQ 347
+ SNFFE RV YQ
Sbjct: 305 ELSNFFERRVSAYQ 318
>gi|379057286|ref|ZP_09847812.1| ribonucleotide-diphosphate reductase subunit beta [Serinicoccus
profundi MCCC 1A05965]
Length = 335
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 180/317 (56%), Gaps = 4/317 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y WA + Y + AN W P E+ + D+ ++ ++E+ER + + +F+ +
Sbjct: 22 LKPVTYPWAMELYDQAVANTWFPHEVQLGEDLGDFER---MSEDERHALTFLMSYFNPNE 78
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D +N++ E+
Sbjct: 79 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRESAYNSHVEVP 138
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+EF + FI +T+ G T+ Q +++L+ + I+EG++FY GF+ L+ +
Sbjct: 139 SMAAKEEFEVRFIRRMTEQTLDIGTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 198
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +I+RDES+H FGI+LI T+ ENP++ T EF +EI + L A+ELE
Sbjct: 199 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLDENPDVATPEFAEEIRGMVLHAVELEE 258
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y + +P GILGLN +Y++++A+ R++++G + + NP WM+ +
Sbjct: 259 AYNREMLPTGILGLNADYINTYVKYLADRRLEELGFEPEYGV-ANPAKWMATANDTLQLV 317
Query: 337 NFFETRVMEYQSGGTLD 353
NFFE+ Y+ D
Sbjct: 318 NFFESINTSYEVNARAD 334
>gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5]
gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5]
Length = 342
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 186/319 (58%), Gaps = 11/319 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DR+ + N W +E+++ D+ + L+ ER LV R + FF+T D
Sbjct: 22 LRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDL---ADLAKLSPAERHLVSRLVAFFATGD 78
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ DE E F+A
Sbjct: 79 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKERFAAFDAVE 138
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SI K EF +ID + +L+ T+ D++ L +LI FA +EGLFFY F +
Sbjct: 139 NIPSIARKAEFCFRWIDSIFELR--ELRTRADRRAFLLNLICFAACIEGLFFYGAFAYVY 196
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F D++ T++ E P+L+ E ++++++ +A+
Sbjct: 197 FLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVETVRAEEPDLFDDEMERQVKEMLAEAV 256
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +AED + +G+ G+++ + YL+ +A+ R+ +GI ++ NPF +M E+ +
Sbjct: 257 ECEVSFAEDLLGQGVPGMSLADMREYLQHVADRRLAVLGIAPMYG-SGNPFAFM-ELQDV 314
Query: 333 KKESNFFETRVMEYQSGGT 351
++ SNFFE RV YQ G T
Sbjct: 315 QELSNFFERRVSAYQVGVT 333
>gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
whipplei str. Twist]
gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
whipplei TW08/27]
gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma
whipplei TW08/27]
gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str.
Twist]
Length = 327
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 178/321 (55%), Gaps = 4/321 (1%)
Query: 30 GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNL 89
G D L P +Y WA D Y + AN W P EI + DI +K +T EE+ V +
Sbjct: 7 GIQDGLLLKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFKK---MTHEEKHAVTFLM 63
Query: 90 GFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIF 149
+F+ + L + G Y +I APEC YL +Q +EEA H +++Y++E+ +D E +
Sbjct: 64 SYFNPNELLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAY 123
Query: 150 NAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFV 209
+++ E+ S+ K+EF + +I +T+ T+ + +++L+ + ++EG++FY GF+
Sbjct: 124 SSHIEVPSMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAYNVVLEGIWFYSGFM 183
Query: 210 QILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFL 269
L ++N + L +I+RDES+H FGI+LI T+ ENP+L T++F EI + +
Sbjct: 184 AALYFRQRNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDLQTSDFADEIRGMII 243
Query: 270 KAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
+E+E Y D +P GILGLN Y++++A+ R++++G + NP WM+
Sbjct: 244 AGVEMEEEYNHDLLPNGILGLNSGYINQYVKYLADRRLEELGFDPEYNV-TNPAKWMATA 302
Query: 330 IHIKKESNFFETRVMEYQSGG 350
+ NFFE Y+S
Sbjct: 303 NDTFELVNFFEAINTSYESNA 323
>gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
marinum DSM 15272]
gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
marinum DSM 15272]
Length = 357
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 174/316 (55%), Gaps = 4/316 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y WA + Y + AN W P EI + D+ ++ +++EER + + +F+ +
Sbjct: 45 LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFER---MSDEERHALTFLMSYFNPNE 101
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H +++Y++E+ +D + ++ +
Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+EF I FI +T+ T+ Q +++L+ + I+EG++FY GF+ L+ +
Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 221
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +I+RDES+H FGI+LI T+ ENP + T EF EI+Q+ L A+E+E
Sbjct: 222 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPEVATAEFAAEIQQMVLDAVEMEE 281
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P GILGLN Y+R++A+ R++++G + NP WM+ +
Sbjct: 282 AYNRDLLPGGILGLNADYINQYVRYLADRRLEELGFGPHYG-ATNPAKWMATANDTLQLV 340
Query: 337 NFFETRVMEYQSGGTL 352
NFFE Y+ L
Sbjct: 341 NFFEATNTSYEVNAKL 356
>gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
Length = 350
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 184/316 (58%), Gaps = 9/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DR+ + N W +E+++ D+ + L+ ER LV R + FF+T D
Sbjct: 30 LRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDL---GDLAKLSSAERHLVSRLVAFFATGD 86
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY---H 153
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ +E E F A+
Sbjct: 87 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEKERFAAFAAVE 146
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI K EF +ID + +L+ + + + L +LI FA +EGLFFY F +
Sbjct: 147 NIPSIARKAEFCFRWIDSIFELR-ELRTQADRRAFLLNLICFAACIEGLFFYGAFAYVYF 205
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDESMH F D+++T++ E P+L+ + ++++++ +A++
Sbjct: 206 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDADLERQVKEMVAEAVD 265
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + +G+ GL++ + YL+ +A+ R+ +GI ++ NPF +M E+ ++
Sbjct: 266 CEVQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPMYG-SANPFAFM-ELQDVQ 323
Query: 334 KESNFFETRVMEYQSG 349
+ SNFFE RV YQ G
Sbjct: 324 ELSNFFERRVSAYQMG 339
>gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris
AB-18-032]
gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris
AB-18-032]
Length = 342
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 182/319 (57%), Gaps = 11/319 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DR+ + N W +E+++ D+ + L+ E+ LV R + FF+T D
Sbjct: 22 LRPMRYPQFFDRFKDAIRNTWTVEEVDLHADL---ADLAKLSPAEQHLVSRLVAFFATGD 78
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE---LEIFNAYH 153
++ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ DE E F A
Sbjct: 79 TIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKQRYEAFAAVE 138
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SI K EF +ID + +L+ T+ D++ L +LI FA +EGLFFY F +
Sbjct: 139 NIPSIARKAEFCFKWIDSIFELR--ELKTRADRRAFLLNLICFAACIEGLFFYGAFAYVY 196
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F D+++T++ E P+L+ E +++ + +A+
Sbjct: 197 FLRSRGVLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDAEMEQQVRDMLAEAV 256
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+ E +A D + +G+ G+ + + YL+ +A+ R+ +GI ++ NPF +M E+ +
Sbjct: 257 DCEVQFAADLLEQGVSGMPLADMRQYLQHVADRRLAMLGIAPMYG-STNPFAFM-ELQDV 314
Query: 333 KKESNFFETRVMEYQSGGT 351
++ SNFFE RV YQ G T
Sbjct: 315 QELSNFFERRVSAYQVGVT 333
>gi|395651770|ref|ZP_10439620.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas extremaustralis 14-3 substr. 14-3b]
gi|395652755|ref|ZP_10440605.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 145
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 114/145 (78%)
Query: 211 ILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270
IL++GR+NKM G +E +QYILRDESMH NFGID+IN IK+ENP+LW TE +E Q+ L+
Sbjct: 1 ILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDTEMKEEATQMILQ 60
Query: 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMI 330
+LE YA DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P NPFPWMSE++
Sbjct: 61 GTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIM 120
Query: 331 HIKKESNFFETRVMEYQSGGTLDWE 355
+KKE NFFETRV+EYQ+GG L W+
Sbjct: 121 DLKKEKNFFETRVIEYQTGGALSWD 145
>gi|383777025|ref|YP_005461591.1| putative ribonucleoside-diphosphate reductase small subunit
[Actinoplanes missouriensis 431]
gi|381370257|dbj|BAL87075.1| putative ribonucleoside-diphosphate reductase small subunit
[Actinoplanes missouriensis 431]
Length = 331
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 181/319 (56%), Gaps = 11/319 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY +DR+ + N W +E+++ D+ + LT E+ LV R + FF+T D
Sbjct: 11 LRPMKYPHFFDRFKDAIKNTWTVEEVDLHSDL---ADLAKLTPAEQHLVSRLVAFFATGD 67
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
++ ANN+VL Y+H+ +PE R YL RQ FEEA+H Y ++++ D E F A
Sbjct: 68 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDPDERAAAFAAVD 127
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SI K EF +ID + +L+ TK D++ L ++I FA +EGLFFY F +
Sbjct: 128 NIPSIARKAEFCFKWIDSVFELR--ELRTKADRRAFLLNVICFAACIEGLFFYGAFAYVY 185
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F D+++ ++ E P+L+ E +++ + +A+
Sbjct: 186 FLRSRGLLQGLASGTNWVFRDESMHMAFAFDVVDQVRAEEPDLFDAEMEQQVRDMLAEAV 245
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D + +G+ G+++ + YL+ +A+ R+ +GI I+ NPF +M E+ +
Sbjct: 246 ECEVQFAADLLEQGVSGMSLGDMREYLQHVADRRLAALGIAPIYG-STNPFAFM-ELQDV 303
Query: 333 KKESNFFETRVMEYQSGGT 351
++ SNFFE RV YQ G T
Sbjct: 304 QELSNFFERRVSAYQVGVT 322
>gi|347756560|ref|YP_004864123.1| ribonucleotide reductase subunit beta [Candidatus
Chloracidobacterium thermophilum B]
gi|347589077|gb|AEP13606.1| Ribonucleotide reductase, beta subunit [Candidatus
Chloracidobacterium thermophilum B]
Length = 332
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 178/318 (55%), Gaps = 8/318 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY ++ Y ++ N W +E++ D+ + LT ER L+ R + FF+T D
Sbjct: 11 LRPMKYPLFYEMYRNAVKNTWTVEEVDFSTDVADLHS--RLTPAERHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ NN+VL Y+HI APE R YL RQ FEEA+H Y ++++ D E F A H
Sbjct: 69 SIVGNNLVLNLYKHINAPEARMYLSRQLFEEALHVQFYLTLLDTYIPDLAERERAFAAVH 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI K +F +ID + L + ++ +K L +L+ FA +EGLFF+ F +
Sbjct: 129 NIPSIARKAQFCQRWIDSIFLLD-ELHTREDRRKFLLNLLCFASCVEGLFFFAAFAYVYF 187
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES+H NF + + ++ E P L+ + Q+ +A++
Sbjct: 188 LRSKGLLHGLASGTNWVFRDESLHMNFAFAVADQVRQEEPELFDDAMEAALVQMIEEAVD 247
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ GL++ + YL F+A+ R+ ++G ++ F Y RNPFP+M ++ ++
Sbjct: 248 CEMQFAEDLLSGGVAGLSLADMRQYLEFVADQRLARLGCERRF-YVRNPFPFM-DLQDVQ 305
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE RV YQ G T
Sbjct: 306 EVTNFFERRVAAYQVGVT 323
>gi|336119009|ref|YP_004573781.1| ribonucleoside-diphosphate reductase subunit beta [Microlunatus
phosphovorus NM-1]
gi|334686793|dbj|BAK36378.1| ribonucleoside-diphosphate reductase beta subunit [Microlunatus
phosphovorus NM-1]
Length = 333
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 172/311 (55%), Gaps = 4/311 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y WA+D Y + AN W P E+ + D+ + ++ +ER + + +F+ +
Sbjct: 22 LKPVTYPWAYDLYNQAVANTWFPHEVQLGEDLSDFAR---MSPDERHALTHLMSYFNPNE 78
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D + ++ +
Sbjct: 79 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRAAAYESHVTVP 138
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+EF + +I +T+ Q +++L+ + I+EG++FY GF+ L+ +
Sbjct: 139 SMAAKEEFEVRYIKRMTEQTLDISTVAGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 198
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +I+RDES+H FGI+LI T+ ENP++ T EF EI+ + + A+ +E
Sbjct: 199 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDIATEEFAAEIQDMIIDAVAMEE 258
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P GILGLN +Y++++A+ R +++G + ++ NP WM+ +
Sbjct: 259 AYNRDLLPNGILGLNADYINTYVKYLADRRFEELGFEPVYGVA-NPAKWMAAANDTLELV 317
Query: 337 NFFETRVMEYQ 347
NFFE+ Y+
Sbjct: 318 NFFESINTSYE 328
>gi|453055152|gb|EMF02599.1| ribonucleoside-diphosphate reductase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 340
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 186/324 (57%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DRY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 20 LRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D E F A
Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEERAAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIRDK +F ++D + + K + + ++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIRDKAQFCFKWMDSVEKID-KLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P+L+ E +++ + +A+E
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRQEEPDLFDDELQQQVTDMLKEAVE 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D +G+ G+N ++ + YL+ +A+ R++++G ++ E NPF +M E+ +++
Sbjct: 256 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLQRLGFAPVYGSE-NPFSFM-ELQNVQ 313
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+ ++
Sbjct: 314 ELTNFFERRASAYQVAVEGTVAFD 337
>gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
Length = 331
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 179/317 (56%), Gaps = 15/317 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY ++ N W +E+++ D+ + +T EER L+ R + FF+T D
Sbjct: 11 LRPMRYPEFYERYRAAIRNTWTVEEVDLNSDL---ADLARMTPEERHLINRLVAFFATGD 67
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD---ELEIFNAYH 153
S+ ANN+VL Y+H+ APE R YL RQ FEEA+H Y ++++ D ++ F A
Sbjct: 68 SIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERVKAFAAVE 127
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF +ID L L + + ++ + L +LI FA +EGLFFY F +
Sbjct: 128 HIPSIRNKAEFCFRWIDSLGGLD-RLESREDRRAFLLNLICFAACIEGLFFYGAFAYVYW 186
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDESMH F +++T++ E P+L+ + ++ Q+ +A+E
Sbjct: 187 FRSRGLLSGLATGTNWVFRDESMHMEFAFSVVDTVRAEEPDLFDDKLGAQVTQMIEEAVE 246
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE---RNPFPWMSEMI 330
E +A D G+ G+NV+ + YL ++A+ R+ ++ FP NPF +M E+
Sbjct: 247 AELAFAADLCGDGMSGMNVEQMRQYLEYVADQRL----VRLRFPVRYGTANPFAFM-ELQ 301
Query: 331 HIKKESNFFETRVMEYQ 347
+++ +NFFE RV YQ
Sbjct: 302 DVQELANFFERRVSAYQ 318
>gi|395771544|ref|ZP_10452059.1| ribonucleoside-diphosphate reductase [Streptomyces acidiscabies
84-104]
Length = 338
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 185/325 (56%), Gaps = 13/325 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ EE+ L+ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---SDLAKLSPEEQHLIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRTAAFAAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K EF +I+ + K + TK D++ L +LI FA +EGLFFY F +
Sbjct: 135 NIPSIREKAEFCFKWINEVE--KLDSLQTKADRRRFLLNLICFAACIEGLFFYGAFAYVY 192
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH +F ++++T++ E P+L+ KE+ + +A+
Sbjct: 193 WFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPDLFDETLQKEVTDMLAEAV 252
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D +G+ G+N ++ ++YL +A+ R+ ++G ++ E NPF +M E+ +
Sbjct: 253 EAELQFARDLCGEGLPGMNTESMRAYLECVADQRLVRLGFAPVYGSE-NPFSFM-ELQGV 310
Query: 333 KKESNFFETRVMEYQSG--GTLDWE 355
++ +NFFE R YQ GT+D +
Sbjct: 311 QELTNFFERRPSAYQVAVEGTVDLD 335
>gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK187]
gi|365963738|ref|YP_004945304.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes TypeIA2 P.acn31]
gi|365965978|ref|YP_004947543.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes TypeIA2 P.acn17]
gi|365974919|ref|YP_004956478.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes TypeIA2 P.acn33]
gi|422426379|ref|ZP_16503301.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA1]
gi|422431582|ref|ZP_16508455.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL059PA2]
gi|422434075|ref|ZP_16510937.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL083PA2]
gi|422442189|ref|ZP_16518993.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA1]
gi|422444998|ref|ZP_16521754.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL027PA1]
gi|422450691|ref|ZP_16527405.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL030PA2]
gi|422452518|ref|ZP_16529216.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA3]
gi|422492622|ref|ZP_16568927.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL086PA1]
gi|422499152|ref|ZP_16575420.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL063PA2]
gi|422509649|ref|ZP_16585804.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL059PA1]
gi|422515056|ref|ZP_16591173.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA2]
gi|422522963|ref|ZP_16598979.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL053PA2]
gi|422540096|ref|ZP_16615968.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL013PA1]
gi|422541971|ref|ZP_16617827.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA1]
gi|422543461|ref|ZP_16619306.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL082PA1]
gi|422557410|ref|ZP_16633154.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL025PA2]
gi|422561871|ref|ZP_16637550.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL046PA1]
gi|422569384|ref|ZP_16644995.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL067PA1]
gi|422577539|ref|ZP_16653069.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA4]
gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK187]
gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL013PA1]
gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA2]
gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL059PA1]
gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL063PA2]
gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL086PA1]
gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA4]
gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL067PA1]
gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL027PA1]
gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA1]
gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL082PA1]
gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA1]
gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL053PA2]
gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL059PA2]
gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL046PA1]
gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL030PA2]
gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA3]
gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL083PA2]
gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA1]
gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL025PA2]
gi|365740419|gb|AEW84621.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes TypeIA2 P.acn31]
gi|365742659|gb|AEW82353.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes TypeIA2 P.acn17]
gi|365744918|gb|AEW80115.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes TypeIA2 P.acn33]
Length = 328
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 171/311 (54%), Gaps = 4/311 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y+WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++LI + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ +E+E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P+GILG+N Y++++A+ R++++G + + NP WM+ +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRV-ANPAKWMATANDTLQVV 308
Query: 337 NFFETRVMEYQ 347
NFFE Y+
Sbjct: 309 NFFEATNTSYE 319
>gi|455647607|gb|EMF26549.1| ribonucleoside-diphosphate reductase [Streptomyces gancidicus BKS
13-15]
Length = 338
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 181/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT EE+ L+ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDV---ADLAKLTPEEQHLIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 135 NIPSIREKAEFCFRWMDSVETID-RLESRSDRRRFLLNLICFAACIEGLFFYGAFAYVYW 193
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ E +++ + +A+E
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEELGRQVTDMLREAVE 253
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 254 AELQFARDLCGDGLPGMNTASMRQYLECVADQRLVRLGFAPVYGSE-NPFSFM-ELQGVQ 311
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 312 ELTNFFERRPSAYQVAVEGTVDLD 335
>gi|422389144|ref|ZP_16469241.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL103PA1]
gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL103PA1]
Length = 328
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 172/313 (54%), Gaps = 8/313 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y+WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++LI + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ +E+E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER--NPFPWMSEMIHIKK 334
Y D +P+GILG+N Y++++A+ R++++G + P R NP WM+ +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFE---PEYRIVNPAKWMATANDTLQ 306
Query: 335 ESNFFETRVMEYQ 347
NFFE Y+
Sbjct: 307 VVNFFEATNTSYE 319
>gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes KPA171202]
gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J139]
gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J165]
gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK137]
gi|335055403|ref|ZP_08548186.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. 434-HC2]
gi|342212612|ref|ZP_08705337.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. CC003-HC2]
gi|354605658|ref|ZP_09023633.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. 5_U_42AFAA]
gi|386025043|ref|YP_005943349.1| ribonucleoside-diphosphate reductase subunit beta
[Propionibacterium acnes 266]
gi|386070294|ref|YP_005985190.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes ATCC 11828]
gi|387504474|ref|YP_005945703.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes 6609]
gi|407936485|ref|YP_006852127.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes C1]
gi|417930713|ref|ZP_12574087.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK182]
gi|419419994|ref|ZP_13960223.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes PRP-38]
gi|422386032|ref|ZP_16466155.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL096PA3]
gi|422386531|ref|ZP_16466648.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL096PA2]
gi|422391810|ref|ZP_16471885.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL099PA1]
gi|422394387|ref|ZP_16474428.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL097PA1]
gi|422423706|ref|ZP_16500657.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL043PA1]
gi|422429879|ref|ZP_16506772.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL072PA2]
gi|422447320|ref|ZP_16524054.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA3]
gi|422455170|ref|ZP_16531846.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL030PA1]
gi|422458258|ref|ZP_16534914.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA2]
gi|422462371|ref|ZP_16538994.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL038PA1]
gi|422463239|ref|ZP_16539855.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL060PA1]
gi|422465672|ref|ZP_16542264.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA4]
gi|422469599|ref|ZP_16546121.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA3]
gi|422473737|ref|ZP_16550210.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL056PA1]
gi|422477009|ref|ZP_16553447.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL007PA1]
gi|422478877|ref|ZP_16555291.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL063PA1]
gi|422482559|ref|ZP_16558952.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA1]
gi|422484720|ref|ZP_16561095.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL043PA2]
gi|422486637|ref|ZP_16562981.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL013PA2]
gi|422489895|ref|ZP_16566221.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL020PA1]
gi|422494875|ref|ZP_16571169.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL025PA1]
gi|422496768|ref|ZP_16573048.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA3]
gi|422502983|ref|ZP_16579225.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL027PA2]
gi|422505093|ref|ZP_16581326.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA2]
gi|422508563|ref|ZP_16584727.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL046PA2]
gi|422512470|ref|ZP_16588599.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA2]
gi|422519146|ref|ZP_16595208.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL074PA1]
gi|422519947|ref|ZP_16595991.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL045PA1]
gi|422526741|ref|ZP_16602735.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL083PA1]
gi|422528162|ref|ZP_16604147.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL053PA1]
gi|422533168|ref|ZP_16609108.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL072PA1]
gi|422535610|ref|ZP_16611527.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL078PA1]
gi|422551771|ref|ZP_16627563.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA3]
gi|422553825|ref|ZP_16629600.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA2]
gi|422560125|ref|ZP_16635823.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA1]
gi|422565624|ref|ZP_16641271.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL082PA2]
gi|422567085|ref|ZP_16642712.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA2]
gi|422574825|ref|ZP_16650373.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL001PA1]
gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium
acnes KPA171202]
gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J139]
gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J165]
gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK137]
gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL074PA1]
gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA2]
gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL083PA1]
gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL025PA1]
gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL046PA2]
gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA1]
gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA2]
gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL063PA1]
gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL007PA1]
gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL056PA1]
gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL001PA1]
gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA3]
gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA2]
gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL082PA2]
gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL053PA1]
gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL045PA1]
gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL072PA2]
gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA3]
gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA1]
gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA2]
gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA3]
gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL078PA1]
gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL027PA2]
gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA3]
gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL072PA1]
gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA4]
gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL060PA1]
gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL038PA1]
gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA2]
gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL030PA1]
gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL096PA3]
gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL096PA2]
gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL097PA1]
gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL043PA2]
gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL043PA1]
gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL013PA2]
gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL020PA1]
gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL099PA1]
gi|332676502|gb|AEE73318.1| ribonucleoside-diphosphate reductase subunit beta
[Propionibacterium acnes 266]
gi|333762051|gb|EGL39566.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. 434-HC2]
gi|335278519|gb|AEH30424.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes 6609]
gi|340768156|gb|EGR90681.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. CC003-HC2]
gi|340769618|gb|EGR92140.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK182]
gi|353454661|gb|AER05180.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes ATCC 11828]
gi|353558314|gb|EHC27678.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. 5_U_42AFAA]
gi|379978368|gb|EIA11692.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes PRP-38]
gi|407905066|gb|AFU41896.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes C1]
gi|456739188|gb|EMF63755.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes FZ1/2/0]
Length = 328
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 172/313 (54%), Gaps = 8/313 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y+WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++LI + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ +E+E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER--NPFPWMSEMIHIKK 334
Y D +P+GILG+N Y++++A+ R++++G + P R NP WM+ +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFE---PEYRVVNPAKWMATANDTLQ 306
Query: 335 ESNFFETRVMEYQ 347
NFFE Y+
Sbjct: 307 VVNFFEATNTSYE 319
>gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
griseoaurantiacus M045]
gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
griseoaurantiacus M045]
Length = 347
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 176/314 (56%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT ER L+ R + FF+T D
Sbjct: 27 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDV---ADLAKLTPAERHLIGRLVAFFATGD 83
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 84 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 143
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 144 NIPSIREKAEFCFRWMDSVERLD-RLETRSDRRRFLLNLICFAACIEGLFFYGAFAYVYW 202
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ E +++ + +A+E
Sbjct: 203 FRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPGLFDEELGRQVTDMLREAVE 262
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL+ +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 263 AELQFARDLCGDGLPGMNTESMRQYLQCVADQRLVRLGFAPVYGSE-NPFSFM-ELQGVQ 320
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 321 ELTNFFERRASAYQ 334
>gi|335052761|ref|ZP_08545632.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. 409-HC1]
gi|333762464|gb|EGL39960.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium sp. 409-HC1]
Length = 339
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 172/313 (54%), Gaps = 8/313 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y+WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 24 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 80
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 81 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 140
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++LI + I+EG++FY GF+ L+ +
Sbjct: 141 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 200
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ +E+E
Sbjct: 201 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 260
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER--NPFPWMSEMIHIKK 334
Y D +P+GILG+N Y++++A+ R++++G + P R NP WM+ +
Sbjct: 261 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFE---PEYRVVNPAKWMATANDTLQ 317
Query: 335 ESNFFETRVMEYQ 347
NFFE Y+
Sbjct: 318 VVNFFEATNTSYE 330
>gi|345009208|ref|YP_004811562.1| ribonucleotide reductase [Streptomyces violaceusniger Tu 4113]
gi|344035557|gb|AEM81282.1| ribonucleotide reductase [Streptomyces violaceusniger Tu 4113]
Length = 340
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 177/315 (56%), Gaps = 11/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DRY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 20 LRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDV---TDLAKLSPGEQHLIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 77 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K EF ++D + K TK D++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIREKAEFCFRWMDSVE--KIDRLETKQDRRRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F +++T++ E P+L+ E +++ + +A+
Sbjct: 195 WLRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDELRQQVTDMLKEAV 254
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D G+ G+N + + YL+ +A+ R+ ++G +F E NPF +M E+ ++
Sbjct: 255 EAELQFARDLCGDGLPGMNTASMQEYLQCVADQRLMRLGFPAVFGSE-NPFSFM-ELQNV 312
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE R YQ
Sbjct: 313 QELTNFFERRASAYQ 327
>gi|374986759|ref|YP_004962254.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
BCW-1]
gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
BCW-1]
Length = 340
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 178/315 (56%), Gaps = 11/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DRY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 20 LRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHLIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K EF +ID + K TK++++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIREKAEFCFRWIDSVD--KIDRLETKDERRRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH NF +++T++ E P L+ E +++ + +A+
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMNFAFQVVDTVREEEPELFDDELQQQVTDMLREAV 254
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D +G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 255 EAELQFARDLCGEGLPGMNTESMRQYLECVADQRLARLGFAPVYGSE-NPFSFM-ELQNV 312
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE R YQ
Sbjct: 313 QELTNFFERRASAYQ 327
>gi|345848582|ref|ZP_08801602.1| Ribonucleoside-diphosphate reductase [Streptomyces zinciresistens
K42]
gi|345639927|gb|EGX61414.1| Ribonucleoside-diphosphate reductase [Streptomyces zinciresistens
K42]
Length = 337
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 180/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT EE L+ R + FF+T D
Sbjct: 17 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPEEHHLIGRLVAFFATGD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 74 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPRDRAAAFDAVE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K F +I+ + L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 134 NIPSIREKAGFCFKWINEVEKLD-RLESRSDRRRFLLNLICFAACIEGLFFYGAFAYVYW 192
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P+L+ +E+ + +A+E
Sbjct: 193 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDRLREEVTDMLREAVE 252
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 253 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 310
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 311 ELTNFFERRPSAYQVAVEGTVDLD 334
>gi|443624323|ref|ZP_21108797.1| putative Ribonucleoside-diphosphate reductase, beta subunit
[Streptomyces viridochromogenes Tue57]
gi|443342237|gb|ELS56405.1| putative Ribonucleoside-diphosphate reductase, beta subunit
[Streptomyces viridochromogenes Tue57]
Length = 337
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 180/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 17 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPAEQHLIGRLVAFFATGD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 74 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 134 NIPSIREKAEFCFKWMDSVEKLD-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 192
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + +++ + +A+E
Sbjct: 193 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLQQQVTDMLREAVE 252
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 253 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 310
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 311 ELTNFFERRPSAYQVAVEGTVDLD 334
>gi|422546967|ref|ZP_16622790.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA3]
gi|422549089|ref|ZP_16624893.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA1]
gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA1]
gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA3]
Length = 328
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 171/311 (54%), Gaps = 4/311 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y+WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + + +++LI + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ +E+E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P+GILG+N Y++++A+ R++++G + + NP WM+ +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308
Query: 337 NFFETRVMEYQ 347
NFFE Y+
Sbjct: 309 NFFEATNTSYE 319
>gi|386842422|ref|YP_006247480.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374102723|gb|AEY91607.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451795715|gb|AGF65764.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 337
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 183/325 (56%), Gaps = 13/325 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT EE+ L+ R + FF+T D
Sbjct: 17 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPEEQHLIGRLVAFFATGD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 74 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K EF +I+ + K +TK D++ L +LI FA +EGLFFY F +
Sbjct: 134 NIPSIREKAEFCFKWINEVE--KIDRLDTKADRRRFLLNLICFAACIEGLFFYGAFAYVY 191
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH +F D+++T++ E P+L+ + +++ + +A+
Sbjct: 192 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLQQQVTDMLHEAV 251
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D G+ G+N + + YL+ +A+ R+ ++G + E NPF +M E+ +
Sbjct: 252 EAELQFAHDLCGDGLPGMNTDSMRQYLQCVADQRLTRLGFAPRYGSE-NPFSFM-ELQGV 309
Query: 333 KKESNFFETRVMEYQSG--GTLDWE 355
++ +NFFE R YQ GT+D +
Sbjct: 310 QELTNFFERRPSAYQVAVEGTVDLD 334
>gi|422437422|ref|ZP_16514269.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL092PA1]
gi|422530701|ref|ZP_16606659.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA1]
gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA1]
gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL092PA1]
Length = 328
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 170/311 (54%), Gaps = 4/311 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y+WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++LI + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ +E+E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P+GI G+N Y++++A+ R++++G + + NP WM+ +
Sbjct: 250 QYNRDMLPRGIRGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308
Query: 337 NFFETRVMEYQ 347
NFFE Y+
Sbjct: 309 NFFEATNTSYE 319
>gi|390957923|ref|YP_006421680.1| ribonucleotide reductase subunit beta [Terriglobus roseus DSM
18391]
gi|390958265|ref|YP_006422022.1| ribonucleotide reductase subunit beta [Terriglobus roseus DSM
18391]
gi|390412841|gb|AFL88345.1| ribonucleotide reductase, beta subunit [Terriglobus roseus DSM
18391]
gi|390413183|gb|AFL88687.1| ribonucleotide reductase, beta subunit [Terriglobus roseus DSM
18391]
Length = 350
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 184/317 (58%), Gaps = 10/317 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY +D + N W +E++ D+ ++ ++ E +KR + FF+T D
Sbjct: 29 LRPMKYPVYYDMFRDGIKNTWTVEEVDFSTDLVDLRSK--MSPAEIHTIKRLVAFFATGD 86
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ +EEA+H Y ++++ D+ E F+A
Sbjct: 87 SIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDQKEREEAFSAVE 146
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SI+ K EF + ++D + L T T++ ++ L +LI FA +EGLFF+ F +
Sbjct: 147 NIPSIQKKAEFCMKWMDSIQALD--TLETRDHRRQFLLNLICFASSIEGLFFFAAFAYVY 204
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDES H F +++NT++ + P+LW + ++I ++ +A+
Sbjct: 205 FFRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNTVRQQEPDLWDADLERQIIEMLEEAV 264
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+ E +A+D + G+ GL+V+ ++YL ++A+ R++++GI F +NPF +M E+ +
Sbjct: 265 DCEAQFADDLLSGGVAGLSVRDMRAYLGYVADSRLQRLGIAPHFK-TKNPFSFM-ELQDV 322
Query: 333 KKESNFFETRVMEYQSG 349
++ +NFFE RV YQ+
Sbjct: 323 QELTNFFERRVSAYQTA 339
>gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. e14]
gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. e14]
Length = 339
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 180/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 19 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDV---ADLAKLTPGEQHLIGRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 136 NIPSIREKAEFCFTWMDSVEKLD-RLETRADRRRFLLNLICFAACIEGLFFYGAFAYVYW 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P+L+ + +++ + +A+E
Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLEQQVTDMLREAVE 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 255 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 312
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 313 ELTNFFERRPSAYQVAVEGTVDLD 336
>gi|417933288|ref|ZP_12576614.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK182B-JCVI]
gi|340772192|gb|EGR94702.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK182B-JCVI]
Length = 328
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 171/311 (54%), Gaps = 4/311 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVTYPWAYDLYNQAVANTWFPNEIQLDEDLADFSR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHVHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++L+ + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLVAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ +++E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATEEFAAEIHDMIVEGVKMEE 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P+GILG+N Y++++A+ R++++G + + + NP WM+ +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEY-HVANPAKWMATANDTLQLV 308
Query: 337 NFFETRVMEYQ 347
NFFE Y+
Sbjct: 309 NFFEATNTSYE 319
>gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
griseoflavus Tu4000]
gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
griseoflavus Tu4000]
Length = 341
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 181/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ EE+ L+ R + FF+T D
Sbjct: 21 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDV---ADLAKLSPEEQHLIGRLVAFFATGD 77
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 137
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 138 NIPSIREKAEFCFRWMDSVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + +++ + +A+E
Sbjct: 197 FRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEQLGQQVTAMLREAVE 256
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 257 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLVRLGFAPVYGSE-NPFSFM-ELQGVQ 314
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 315 ELTNFFERRPSAYQVAVEGTVDLD 338
>gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
albus J1074]
gi|359149120|ref|ZP_09182184.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. S4]
gi|421744323|ref|ZP_16182311.1| ribonucleotide reductase, beta subunit [Streptomyces sp. SM8]
gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
albus J1074]
gi|406687275|gb|EKC91308.1| ribonucleotide reductase, beta subunit [Streptomyces sp. SM8]
Length = 350
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 183/324 (56%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 30 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHLIGRLVAFFATGD 86
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D + F A
Sbjct: 87 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRADAFAAVE 146
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + + +K L +LI FA +EGLFFY F +
Sbjct: 147 NIPSIREKAEFCFRWMDSVDKLD-QLESQADRRKFLLNLICFAACIEGLFFYGAFAYVYW 205
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + +++ + +A+E
Sbjct: 206 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLQEQVVAMLKEAVE 265
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL +A+ R+ ++G ++ +NPF +M E+ ++
Sbjct: 266 AELQFARDLCGDGLPGMNTESMREYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 323
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE RV YQ GT+ ++
Sbjct: 324 ELTNFFERRVSAYQVAVEGTVSFD 347
>gi|395205872|ref|ZP_10396503.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium humerusii P08]
gi|422440759|ref|ZP_16517572.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA3]
gi|422472121|ref|ZP_16548609.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA2]
gi|422572884|ref|ZP_16648451.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL044PA1]
gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA2]
gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL044PA1]
gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA3]
gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium humerusii P08]
Length = 324
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 173/311 (55%), Gaps = 8/311 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y WA+D Y + AN W P E+ + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++LI + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP++ T EF EI + LK +E+E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPDIATDEFAVEIHDMILKGVEMEA 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P+GI G+N Y++++A+ R++++G++ + + NP WM+ +
Sbjct: 250 QYNRDMLPRGIPGMNA----DYVKYLADRRLEELGLEPEY-HVANPAKWMATANDTLQLV 304
Query: 337 NFFETRVMEYQ 347
NFFET Y+
Sbjct: 305 NFFETTNTSYE 315
>gi|386839868|ref|YP_006244926.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374100169|gb|AEY89053.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451793162|gb|AGF63211.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 337
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 182/324 (56%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT EE+ L+ R + FF+T D
Sbjct: 17 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPEEQHLIGRLVAFFATGD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 74 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF +I+ + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 134 NIPSIREKAEFCFKWINEVEKID-RLDSKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 192
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P+L+ + +++ + +A+E
Sbjct: 193 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLQQQVTDMLHEAVE 252
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL+ +A+ R+ ++G + E NPF +M E+ ++
Sbjct: 253 AELQFAHDLCGDGLPGMNTDSMRQYLQCVADQRLTRLGFAPRYGSE-NPFSFM-ELQGVQ 310
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 311 ELTNFFERRPSAYQVAVEGTVDLD 334
>gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
avermitilis MA-4680]
gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces avermitilis MA-4680]
Length = 338
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 181/325 (55%), Gaps = 13/325 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPAEQHLIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K EF +I+ + K TK D++ L +LI FA +EGLFFY F +
Sbjct: 135 NIPSIREKAEFCFKWINEVE--KLDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVY 192
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH +F ++++T++ E P L+ E +++ + +A+
Sbjct: 193 WFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDELQQQVTDMLREAV 252
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E + D G+ G+N ++ + YL +A+ R++++G ++ E NPF +M E+ +
Sbjct: 253 EAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLQRLGFAPVYGSE-NPFSFM-ELQGV 310
Query: 333 KKESNFFETRVMEYQSG--GTLDWE 355
++ +NFFE R YQ GT+D +
Sbjct: 311 QELTNFFERRASAYQVAVEGTVDLD 335
>gi|408826315|ref|ZP_11211205.1| ribonucleoside-diphosphate reductase [Streptomyces somaliensis DSM
40738]
Length = 339
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 182/325 (56%), Gaps = 13/325 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPGEQHLIGRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K F ++D + K TK D++ L +LI FA +EGLFFY F +
Sbjct: 136 NIPSIREKAAFCFRWMDSVE--KLDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVY 193
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH F ++++T++ E P+L+ E +++ + +A+
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMGFAFEVVDTVRKEEPDLFDDELGRQVADMLKEAV 253
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D G+ G+N ++ ++YL +A+ R+ ++G+ ++ E NPF +M E+ +
Sbjct: 254 EAELQFARDLCGDGLPGMNTESMRAYLECVADQRLTRLGLTPVYGSE-NPFAFM-ELQGV 311
Query: 333 KKESNFFETRVMEYQSG--GTLDWE 355
++ +NFFE R YQ G++D +
Sbjct: 312 QELTNFFERRPSAYQVAVEGSVDLD 336
>gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sviceus ATCC 29083]
gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sviceus ATCC 29083]
Length = 340
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 181/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---TDLAKLSPAEQHLIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPQDRAAAFDAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF +I+ + L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIREKAEFCFRWINEVEKLD-RLESQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ +++ + +A+E
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLAEAVE 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 256 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 313
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 314 ELTNFFERRPSAYQVAVEGTVDLD 337
>gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 341
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 179/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 21 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPAEQHLIGRLVAFFATGD 77
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 137
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K F ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 138 NIPSIREKASFCFKWMDSVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + +E+ + +A+E
Sbjct: 197 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQEVTDMLREAVE 256
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 257 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 314
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 315 ELTNFFERRPSAYQVAVEGTVDLD 338
>gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 343
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 176/314 (56%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DRY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 23 LRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMISRLVAFFATGD 79
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 80 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAASFAAVE 139
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 140 NIPSIREKAEFCFRWMDSVEKID-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 198
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDESMH F +++T++ E P+L+ + +++ + +A+E
Sbjct: 199 FRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDDLERQVTDMLKEAVE 258
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ ++YL +A+ R+ ++G +F E NPF +M E+ ++
Sbjct: 259 AELQFAHDLCGDGLPGMNTESMRAYLECVADQRLARLGFPAVFGSE-NPFSFM-ELQDVQ 316
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 317 ELTNFFERRASAYQ 330
>gi|429196106|ref|ZP_19188092.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
ipomoeae 91-03]
gi|428668184|gb|EKX67221.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
ipomoeae 91-03]
Length = 340
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 180/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPAEQHLIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K +F ++D + L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIREKAQFCFTWMDSVEKLD-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P+L+ +++ + +A+E
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDRLQQQVTDMLREAVE 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 256 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 313
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 314 ELTNFFERRPSAYQVAVEGTVDLD 337
>gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
ghanaensis ATCC 14672]
gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
ghanaensis ATCC 14672]
Length = 340
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 179/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPAEQHLIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIREKAEFCFTWMDSVEKLD-RLQTQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ +++ + +A+E
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAVE 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL +A+ R+ ++G ++ +NPF +M E+ ++
Sbjct: 256 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 313
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 314 ELTNFFERRPSAYQVAVEGTVDLD 337
>gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB74]
gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB74]
Length = 345
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 178/314 (56%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY ++ N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 25 LRPMRYPDFYERYRNAIKNTWTVEEVDLHSDV---ADLAKLTPGEQHLIGRLVAFFATGD 81
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D + F A
Sbjct: 82 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRADAFAAVE 141
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF +ID + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 142 NIPSIREKAEFCFKWIDEVEKID-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 200
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ E +E++ + A+
Sbjct: 201 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDAELEQEVKDMLDGAVN 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL+ +A+ R++++G ++ NPF +M E+ ++
Sbjct: 261 AELQFARDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYG-SSNPFSFM-ELQGVQ 318
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 319 ELTNFFERRPSAYQ 332
>gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces roseosporus NRRL 11379]
gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
roseosporus NRRL 15998]
gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
roseosporus NRRL 15998]
Length = 338
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 180/315 (57%), Gaps = 11/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
EI SIR+K +F ++D + K + TK D++ L +LI FA +EGLFFY F +
Sbjct: 135 EIPSIREKAQFCFKWMDSVE--KIERLETKADRRRFLLNLICFAACIEGLFFYGAFAYVY 192
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH NF ++++T++ E P+L+ E +++ + +A+
Sbjct: 193 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDELQQQVTDMLKEAV 252
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E + D +G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ +
Sbjct: 253 EAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYGSE-NPFSFM-ELQGV 310
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE R YQ
Sbjct: 311 QELTNFFERRPSAYQ 325
>gi|441155687|ref|ZP_20966846.1| ribonucleoside-diphosphate reductase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440617882|gb|ELQ80969.1| ribonucleoside-diphosphate reductase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 354
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 178/314 (56%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 34 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 90
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 91 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 150
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 151 NIPSIREKAEFCFKWMDSVETID-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 209
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF +++T++ E P+L+ E +++ + +A+E
Sbjct: 210 FRSRGLLHGLATGTNWVFRDETMHMNFAFSVVDTVREEEPDLFDEELERQVTDMLKEAVE 269
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D G+ G+N ++ + YL+ +A+ R++++G ++ E NPF +M E+ +++
Sbjct: 270 AELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYGSE-NPFSFM-ELQNVQ 327
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 328 ELTNFFERRASAYQ 341
>gi|440698868|ref|ZP_20881190.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
turgidiscabies Car8]
gi|440278680|gb|ELP66674.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
turgidiscabies Car8]
Length = 341
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 182/324 (56%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+E ER ++ R + FF+T D
Sbjct: 21 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---SDLAKLSEGERHMIGRLVAFFATGD 77
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 78 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRAAAFDAVE 137
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF +I+ + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 138 NIPSIREKAEFCFRWINEVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F ++++T++ E P L+ + +++ + +A+E
Sbjct: 197 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDQLQQQVTDMMREAVE 256
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D +G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 257 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLGRLGFAPVYGSE-NPFSFM-ELQGVQ 314
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 315 ELTNFFERRPSAYQVAVEGTVDLD 338
>gi|456388970|gb|EMF54410.1| nrdM protein [Streptomyces bottropensis ATCC 25435]
Length = 337
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 182/324 (56%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+E E+ ++ R + FF+T D
Sbjct: 17 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSEGEQHMIGRLVAFFATGD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D + F A
Sbjct: 74 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRVAAFAAVE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 134 NIPSIREKAEFCFKWMDSVEKLD-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 192
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F ++++T++ E P+L+ +++ + +A+E
Sbjct: 193 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPDLFDDLLQQQVTDMLKEAVE 252
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 253 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 310
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 311 ELTNFFERRPSAYQVAVEGTVDLD 334
>gi|383315471|ref|YP_005376313.1| ribonucleotide reductase subunit beta [Frateuria aurantia DSM 6220]
gi|379042575|gb|AFC84631.1| ribonucleotide reductase, beta subunit [Frateuria aurantia DSM
6220]
Length = 340
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 176/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY ++ + + N W +EIN Q DI + + + ER L+ R + FF+T D
Sbjct: 19 LRPMKYPQYFEMFKNGIKNTWTVEEINFQIDISDLHS--KMNDAERHLIYRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD---ELEIFNAYH 153
++ ANN+VL Y+HI APE R YL RQ +EEA+H Y ++++ D + F A
Sbjct: 77 TIVANNLVLNLYQHINAPEARMYLSRQLYEEALHIQFYLTLLDNYIPDINERQKAFAAIE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + +L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIKKKGDFCFKWIDSVQNLH-RLESKADRKQFLLNLICFAACIEGLFFYGAFSYVYY 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F D++ T++ + P+L+ E ++ ++ +AI+
Sbjct: 196 LRDKGLLPGLASGTNWVFRDESCHMEFAFDVVKTVREQEPDLFDAELEAQVYEMLEEAIQ 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A+D + G++G K + YL + A+ R +++G+ + NP PWM E+ ++
Sbjct: 256 CETAFADDVLGLGVMGFTPKMMRQYLEYCADDRFRRLGMAPKYNVS-NPLPWM-ELQDVQ 313
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 314 ELTNFFERRVTAYQVG 329
>gi|383650825|ref|ZP_09961231.1| Ribonucleoside-diphosphate reductase [Streptomyces chartreusis NRRL
12338]
Length = 335
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 179/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 15 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPAEQHLIGRLVAFFATGD 71
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 72 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 131
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K F ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 132 NIPSIREKAGFCFKWMDSVEQLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 190
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + +++ + +A+E
Sbjct: 191 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQQVTDMLREAVE 250
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 251 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLSRLGFAPVYGSE-NPFSFM-ELQGVQ 308
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 309 ELTNFFERRPSAYQVAVEGTVDLD 332
>gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit
[Stenotrophomonas sp. SKA14]
gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit
[Stenotrophomonas sp. SKA14]
Length = 339
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 174/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D Y ++ N W +EIN Q DI + ++ ER L+ R + FF+T D
Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD---ELEIFNAYH 153
S+ +NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D ++ F A
Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERVKAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + DLK + Q LL + ACI EGLFF+ F +
Sbjct: 136 NIDSIKKKADFCFKWIDSIQDLKRIETRAERRQFLLNQICFAACI-EGLFFFAAFAYVYY 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H F + + ++ E P+L+ E +++ + +AIE
Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEMKQQVYDMLAEAIE 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++ + + YL+ A+ ++G+++ + RNP P+M E+ ++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDVQ 312
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 313 ELTNFFERRVSAYQVG 328
>gi|408529356|emb|CCK27530.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
davawensis JCM 4913]
Length = 337
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 179/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 17 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPAEQHLIGRLVAFFATGD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 74 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K F +I+ + L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 134 NIPSIREKAGFCFKWINEVEKLD-RLESQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 192
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ +++ + +A+E
Sbjct: 193 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLREAVE 252
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 253 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLSRLGFAPVYGSE-NPFSFM-ELQGVQ 310
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 311 ELTNFFERRPSAYQVAVEGTVDLD 334
>gi|350568234|ref|ZP_08936638.1| ribonucleotide-diphosphate reductase beta subunit
[Propionibacterium avidum ATCC 25577]
gi|348661876|gb|EGY78553.1| ribonucleotide-diphosphate reductase beta subunit
[Propionibacterium avidum ATCC 25577]
Length = 328
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 169/311 (54%), Gaps = 4/311 (1%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y WA+D Y + AN W P EI + D+ + +T +E + + +F+ +
Sbjct: 13 LKPVIYPWAYDLYNQAVANTWFPNEIQLDEDLADFGR---MTPDEHHALTHLMSYFNPNE 69
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
L + G Y ++ A EC YL +Q +EEA H A++Y++E+ +D E + ++ +
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDREEAYRSHVHVP 129
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
S+ K+ F + FI +T+ + Q +++L+ + I+EG++FY GF+ L+ +
Sbjct: 130 SMARKESFEVAFIKRMTEQTLDITTIEGKQDFVRNLVAYNIILEGIWFYSGFMVALSFRQ 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+N + L +++RDES+H FG++LI T+ ENP + T EF EI + ++ + +E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEVATEEFATEIHDMIVEGVSMEE 249
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
Y D +P+GILG+N Y++++A+ R++++G + + NP WM+ +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRV-ANPAKWMATANDTLQLV 308
Query: 337 NFFETRVMEYQ 347
NFFE Y+
Sbjct: 309 NFFEATNTSYE 319
>gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum So ce56]
gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum So ce56]
Length = 339
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 172/316 (54%), Gaps = 9/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y ++ Y S+ N W +E++ D+ + +T+ ER LV+R + FF+T D
Sbjct: 19 LRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLRK---MTDAERHLVQRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL YRHI APE R YL RQ +EEA+H Y ++++ D F A
Sbjct: 76 SIVANNLVLNLYRHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPEDRHRAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K +F + ++D + L + ++ L +LI FA +EGLFF+ F +
Sbjct: 136 NIPSIRQKADFCMRWLDSVESLG-RLDTRAERRRFLLNLICFAACVEGLFFFGAFAYVYF 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F ++++T + E P L+ + I + +AI
Sbjct: 195 LRSRGLLHGLAAGTSWVFRDESAHMRFAFEVVSTARREEPELFDAGLARSILDMMDEAIA 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++ + + YL F A+ R+ +G+ + + +NPF +M ++ ++
Sbjct: 255 CEARFAEDLLGAGVAGMSARDVRRYLEFCADQRLATLGMPKRYG-AKNPFSFM-DLQDVQ 312
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 313 EVTNFFERRVSAYQVG 328
>gi|357411278|ref|YP_004923014.1| ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
ATCC 33331]
gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
ATCC 33331]
Length = 338
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 186/328 (56%), Gaps = 12/328 (3%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
NK +++ ++ L P +Y ++RY + N W +E+++ D+ + L+ E+
Sbjct: 6 NKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQH 61
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-- 141
++ R + FF+T DS+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++
Sbjct: 62 MIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLP 121
Query: 142 -GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIM 199
D F+A EI SIR+K +F ++D + K + TK D++ L +LI FA +
Sbjct: 122 DPEDRAAAFDAVEEIPSIREKAQFCFRWMDSVE--KIERLETKADRRRFLLNLICFAACI 179
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EGLFFY F + + + G + ++ RDE+MH NF ++++T++ E P+L+ E
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDE 239
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
+++ + +A+E E + D G+ G+N ++ + YL +A+ R+ ++G ++ E
Sbjct: 240 LRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFPALYGSE 299
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQ 347
NPF +M E+ +++ +NFFE R YQ
Sbjct: 300 -NPFSFM-ELQGVQELTNFFERRPSAYQ 325
>gi|442322490|ref|YP_007362511.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus
stipitatus DSM 14675]
gi|441490132|gb|AGC46827.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus
stipitatus DSM 14675]
Length = 336
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 178/315 (56%), Gaps = 10/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y ++ Y ++ N W +E++ D+ ++ +T+ ER L+ R + FF+T D
Sbjct: 11 LRPMAYPAFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ NN+VL Y+HI APE R YL RQ FEEA+H Y ++++ D E F A
Sbjct: 69 SIVGNNLVLNLYKHINAPEARMYLSRQLFEEALHVQFYLTLLDTYVPDPAERAKAFAAID 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDL-KFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SI+ K F + ++D + D+ KT + + ++ L +LI FA +EGLFF+ F +
Sbjct: 129 NIPSIQRKARFCMKWMDSIHDVDALKTKDER--RRFLLNLICFAGCIEGLFFFAAFAYVY 186
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDES H F + I + E P+L+ + +++E + +A+
Sbjct: 187 FLRSKGLLNGLAAGTNWVFRDESAHMGFAFECIQVARKEEPDLFDAKMERDVEAMMREAV 246
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A+D + G+ GL+V+ + YL ++A+ R++ +GI +F +NP +M ++ +
Sbjct: 247 ECETQFAQDLLSGGVAGLSVQEMRGYLEYVADQRLQMLGIPAVFK-TKNPLSFM-DLQDV 304
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE RV YQ
Sbjct: 305 QELTNFFERRVSAYQ 319
>gi|383454419|ref|YP_005368408.1| ribonucleoside-diphosphate reductase subunit beta [Corallococcus
coralloides DSM 2259]
gi|380733637|gb|AFE09639.1| ribonucleoside-diphosphate reductase subunit beta [Corallococcus
coralloides DSM 2259]
Length = 336
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 178/316 (56%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y ++ Y ++ N W +E++ D+ ++ +T+ ER L+ R + FF+T D
Sbjct: 11 LRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 69 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPAERAKAFAAVD 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K F + ++D + L + + + ++ L +LI FA +EGLFF+ F +
Sbjct: 129 NIPSIQRKARFCMKWMDSIQALD-QVRSKSDRRQFLLNLICFAGCIEGLFFFAAFAYVYF 187
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F + I T + E P+L+ K++ Q+ A+E
Sbjct: 188 LRSKGLLNGLAAGTNWVFRDESAHMAFAFEAIKTARKEEPDLFDAGLEKDVVQMMRDAVE 247
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A+D + G++GL+V+ + YL ++A+ R++ +G+ IF + +NP +M ++ ++
Sbjct: 248 CETQFAQDLLSGGVMGLSVQEMRGYLEYVADQRLQMLGMAPIF-HTKNPLHFM-DLQDVQ 305
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 306 ELTNFFERRVSSYQVG 321
>gi|398782657|ref|ZP_10546371.1| ribonucleoside-diphosphate reductase [Streptomyces auratus AGR0001]
gi|396996721|gb|EJJ07707.1| ribonucleoside-diphosphate reductase [Streptomyces auratus AGR0001]
Length = 381
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 179/315 (56%), Gaps = 11/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDI-ELWKNPIGLTEEERRLVKRNLGFFSTA 95
L P +Y +DRY + N W +E+++ D+ +L K L+ E+ ++ R + FF+T
Sbjct: 61 LRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVADLAK----LSPGEQHMIGRLVAFFATG 116
Query: 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAY 152
DS+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 117 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 176
Query: 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K EF ++D + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 177 ENIPSIREKAEFCFKWMDSVESID-RLESRADRRRFLLNLICFAACIEGLFFYGAFAYVY 235
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDESMH F +++T++ E P+L+ + +++ ++ +A+
Sbjct: 236 WFRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVRQEEPDLFDDKLEQQVTEMLREAV 295
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E + D G+ G+N + + YL+ +A+ R++++G ++ +NPF +M E+ ++
Sbjct: 296 EAELQFGRDLCGDGLPGMNTASMREYLQCVADQRLQRLGFAPVYG-SQNPFSFM-ELQNV 353
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE R YQ
Sbjct: 354 QELTNFFERRASAYQ 368
>gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi CCUG 18818]
gi|402783511|ref|YP_006638840.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi PAGU611]
gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi CCUG 18818]
gi|386780093|dbj|BAM14951.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi PAGU611]
gi|396078206|dbj|BAM31582.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi ATCC BAA-847]
Length = 348
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 183/329 (55%), Gaps = 13/329 (3%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++I G+ T + L KY WA++ + + AN W P+E+N+ D + + GLT +E+
Sbjct: 25 DRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNLNGDKRDYAD--GLTAQEK 82
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
R L DSL NN++ +IT+PE L+RQAFEEA+H+ +Y +VES+
Sbjct: 83 AGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVESIS 142
Query: 143 LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
+ EI+ + +R K+ D + ++ + G +Q LLK+L I+EG+
Sbjct: 143 ANTDEIYEMWRVDMQLRSKN-------DHIANVYIELGKQPTEQNLLKALFA-NQILEGI 194
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
+FY GF L R KM+GS+++ ++I RDE H +IN ++ E P+L+T +
Sbjct: 195 YFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLVFQQMINALRKEQPHLFTPSLEE 254
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNP 322
E+ +F KA+E+E + E ILGL + + Y++++A+ R++ +G+++I+ + +NP
Sbjct: 255 EVIAMFQKAVEIESVWGEYITQGQILGLTAEIIREYIQYLADMRLRAVGLREIY-HSKNP 313
Query: 323 FPWMSEMIHIK-KESNFFETRVMEYQSGG 350
W+ + +++NFFE +V Y G
Sbjct: 314 IKWVEQFASFNDQKTNFFEAKVTNYSKGS 342
>gi|386357723|ref|YP_006055969.1| ribonucleoside-diphosphate reductase small subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365808231|gb|AEW96447.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 340
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 187/325 (57%), Gaps = 13/325 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY ++ N+W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 20 LRPMRYPDFYERYRNAIKNNWTVEEVDLHSDV---ADLAKLSPGEQHLIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDL-KFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K +F ++D + ++ + +T + ++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIREKAQFCFRWMDSVEEIDRLRTKAER--RRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDESMH +F +++T++ E P+L+ E K++ + +A+
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDESMHMDFAFQVVDTVRAEEPDLFDEEMGKQVTAMLEEAV 254
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D G+ G+N ++ ++YL +A+ R+ ++G+ + +NPF +M E+ ++
Sbjct: 255 EAELQFARDLCGDGLPGMNTESMRAYLECVADQRLVRLGLPVRYG-SQNPFSFM-ELQNV 312
Query: 333 KKESNFFETRVMEYQSG--GTLDWE 355
++ +NFFE R YQ GT+ ++
Sbjct: 313 QELTNFFERRASAYQVAVEGTVSFD 337
>gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicolor A3(2)]
gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces coelicolor A3(2)]
gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicolor A3(2)]
Length = 343
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 178/322 (55%), Gaps = 11/322 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDV---ADLAKLSPMEQHLIGRLVAFFATGD 79
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 139
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 140 NIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 198
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + +++ + +A+E
Sbjct: 199 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLREAVE 258
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 259 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 316
Query: 334 KESNFFETRVMEYQSG--GTLD 353
+ +NFFE R YQ GT+D
Sbjct: 317 ELTNFFERRPSAYQVAVEGTVD 338
>gi|357401660|ref|YP_004913585.1| ribonucleoside-diphosphate reductase small subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337768069|emb|CCB76782.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 342
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 187/325 (57%), Gaps = 13/325 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY ++ N+W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 22 LRPMRYPDFYERYRNAIKNNWTVEEVDLHSDV---ADLAKLSPGEQHLIGRLVAFFATGD 78
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 79 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 138
Query: 154 EIKSIRDKDEFLIPFIDVLTDL-KFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K +F ++D + ++ + +T + ++ L +LI FA +EGLFFY F +
Sbjct: 139 NIPSIREKAQFCFRWMDSVEEIDRLRTKAER--RRFLLNLICFAACIEGLFFYGAFAYVY 196
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDESMH +F +++T++ E P+L+ E K++ + +A+
Sbjct: 197 WFRSRGLLHGLATGTNWVFRDESMHMDFAFQVVDTVRAEEPDLFDEEMGKQVTAMLEEAV 256
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D G+ G+N ++ ++YL +A+ R+ ++G+ + +NPF +M E+ ++
Sbjct: 257 EAELQFARDLCGDGLPGMNTESMRAYLECVADQRLVRLGLPVRYG-SQNPFSFM-ELQNV 314
Query: 333 KKESNFFETRVMEYQSG--GTLDWE 355
++ +NFFE R YQ GT+ ++
Sbjct: 315 QELTNFFERRASAYQVAVEGTVSFD 339
>gi|357391820|ref|YP_004906661.1| putative ribonucleoside-diphosphate reductase subunit beta
[Kitasatospora setae KM-6054]
gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta
[Kitasatospora setae KM-6054]
Length = 339
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 181/315 (57%), Gaps = 11/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +DRY + N W +E+++ D+ + L+E ER ++ R + FF+T D
Sbjct: 19 LRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDV---ADLAKLSEGERHMIGRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D + F A
Sbjct: 76 SIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SI K +F +++ + + + +K D++ L +LI FA +EGLFFY F +
Sbjct: 136 NIPSIAQKAQFCFKYMNAVDHID--SLRSKEDRRAFLLNLICFAACVEGLFFYGAFAYVY 193
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDESMH +F +++T++ E P+L+ + +++ ++ +A+
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDESMHMDFAFSVVDTVREEEPDLFDDKMARQVTEMLEEAV 253
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D +G+ G+N ++ + YL+ +A+ R+ ++G+ I NPF +M E+ ++
Sbjct: 254 EAELQFARDLCGEGLPGMNTESMREYLQAVADQRLARLGLP-IRYGSTNPFGFM-ELQNV 311
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE RV YQ
Sbjct: 312 QELTNFFERRVSAYQ 326
>gi|418471848|ref|ZP_13041638.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicoflavus ZG0656]
gi|371547525|gb|EHN75895.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicoflavus ZG0656]
Length = 343
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 178/322 (55%), Gaps = 11/322 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDV---ADLAKLSPMEQHLIGRLVAFFATGD 79
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 139
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 140 NIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 198
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ +++ + +A+E
Sbjct: 199 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLREQVTDMLREAVE 258
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 259 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 316
Query: 334 KESNFFETRVMEYQSG--GTLD 353
+ +NFFE R YQ GT+D
Sbjct: 317 ELTNFFERRPSAYQVAVEGTVD 338
>gi|344205623|ref|YP_004790764.1| ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
JV3]
gi|343776985|gb|AEM49538.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
JV3]
Length = 339
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 173/316 (54%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D Y ++ N W +EIN Q DI + ++ ER L+ R + FF+T D
Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F+A
Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + DL + Q LL + ACI EGLFF+ F +
Sbjct: 136 NIDSIKKKADFCFKWIDSIQDLTRIETRAQRRQFLLNQICFAACI-EGLFFFAAFAYVYY 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H F + + ++ E P+L+ E +++ + +AIE
Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEMKQQVYDMLAEAIE 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++ + + YL+ A+ ++G+++ + RNP P+M E+ ++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDVQ 312
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 313 ELTNFFERRVSAYQVG 328
>gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
lividans TK24]
gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
lividans TK24]
Length = 343
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 178/322 (55%), Gaps = 11/322 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDV---ADLAKLSPMEQHLIGRLVAFFATGD 79
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 139
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 140 NIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 198
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + +++ + +A+E
Sbjct: 199 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLREAVE 258
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N + + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 259 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYGSE-NPFSFM-ELQGVQ 316
Query: 334 KESNFFETRVMEYQSG--GTLD 353
+ +NFFE R YQ GT+D
Sbjct: 317 ELTNFFERRPSAYQVAVEGTVD 338
>gi|320107274|ref|YP_004182864.1| ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
Length = 346
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 177/316 (56%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D + N W +E++ Q D+ K LT E ++R + FF+T D
Sbjct: 25 LRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQ--RLTPAEIHTIQRLVAFFATGD 82
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ + E F A
Sbjct: 83 SIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDNYIPEPEERNAAFAAVE 142
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI K +F + ++D + L + ++ ++ L +LI FA +EGLFF+ F +
Sbjct: 143 NIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAACIEGLFFFAAFAYVYF 201
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H F +++ ++ + P+LW TE +++ + +AI+
Sbjct: 202 FRSKGLLHGLASGTNWVFRDESAHLEFAFEVVQVVRAQEPDLWDTELERQVVVMMEEAID 261
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ GL+V+ + YL ++A+ R++++GI F +NPF +M E+ ++
Sbjct: 262 AEAQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLERLGIGAHFN-AKNPFSFM-ELQDVQ 319
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ+
Sbjct: 320 ELTNFFERRVSAYQTA 335
>gi|291303011|ref|YP_003514289.1| ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
DSM 44728]
gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
DSM 44728]
Length = 338
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 182/324 (56%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++++ ++ N W +E+++ D+ + T+ ER L+ R + FF+T D
Sbjct: 18 LRPMRYPDFYEQFRAAIRNTWTVEEVDLASDL---PDLATFTDSERHLINRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
++ ANN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D ++ F A
Sbjct: 75 TIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVHVQFYLTLLDTYLPDPEDRVKAFAAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI++K EF +ID + L + ++ + L +LI FA +EGLFFY F +
Sbjct: 135 HIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAACIEGLFFYGAFAYVYW 193
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H NF +++ ++ E P L+ E + + ++ +A+
Sbjct: 194 LRSRGLLDGLATGTNWVFRDESCHMNFAFSVVDVVRNEEPELFDDELTEAVTRMIEEAVA 253
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D +G+ G+ V KSYL ++A+ R+ ++G+ + +NPF +M+ + ++
Sbjct: 254 AELQFARDLCGEGMPGMTVNDMKSYLEYVADQRLTRLGMPVRYG-SKNPFGFMA-LQDVQ 311
Query: 334 KESNFFETRVMEYQ--SGGTLDWE 355
+ +NFFE R YQ GGT+D +
Sbjct: 312 ELTNFFERRPTAYQVAVGGTVDLD 335
>gi|389794223|ref|ZP_10197381.1| ribonucleoside-diphosphate reductase [Rhodanobacter fulvus Jip2]
gi|388432748|gb|EIL89737.1| ribonucleoside-diphosphate reductase [Rhodanobacter fulvus Jip2]
Length = 341
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 175/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ Y ++ N W +E++ D ++ +R L++R + FF+T D
Sbjct: 20 LRPMRYPGFYEMYRNAIKNTWTVEEVDFSMDTRDLDTK--MSAADRHLIRRLVAFFATGD 77
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
++ +NN+VL Y+HI APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 78 TIVSNNLVLNLYQHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPAERNAAFAAIE 137
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K F +ID + L+ + + ++ L +LI FA +EGLFFY F +
Sbjct: 138 TIPSIQQKGAFCFKWIDSIQGLR-RLETRAHRRQFLLNLICFAACIEGLFFYAAFAYVYY 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F D++ T++ + P+L+ + ++EQ+ +AI
Sbjct: 197 LRSRGLLHGLAAGTNWVFRDESCHMAFAFDVVRTVREQEPDLFDADMRAQVEQMMEEAIA 256
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++VK + YL + A+ R Q+ + + + +NPF +M ++ ++
Sbjct: 257 CETQFAEDVLSGGVAGMSVKDMRQYLEYCADQRFAQLDMPKKYG-AKNPFDFM-DLQDVQ 314
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 315 ELANFFERRVSAYQVG 330
>gi|386716674|ref|YP_006183000.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
[Stenotrophomonas maltophilia D457]
gi|384076236|emb|CCH10817.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Stenotrophomonas maltophilia D457]
Length = 339
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 173/316 (54%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D Y ++ N W +EIN Q DI + ++ ER L+ R + FF+T D
Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F+A
Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + DL + Q LL + ACI EGLFF+ F +
Sbjct: 136 NIDSIKKKADFCFKWIDSIQDLTRIETREQRRQFLLNQICFAACI-EGLFFFAAFAYVYY 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H F + + ++ E P+L+ E +++ + +AIE
Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEMKQQVYDMLAEAIE 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++ + + YL+ A+ ++G+++ + RNP P+M E+ ++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDVQ 312
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 313 ELTNFFERRVSAYQVG 328
>gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
C]
gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
C]
Length = 356
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 180/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ ++ R + FF+T D
Sbjct: 36 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPAEQHMIGRLVAFFATGD 92
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 93 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 152
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
EI SIR+K +F ++D + ++ + + ++ L +LI FA +EGLFFY F +
Sbjct: 153 EIPSIREKAQFCFKWMDSVEKIE-RLETAADRRRFLLNLICFAACIEGLFFYGAFAYVYW 211
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A+E
Sbjct: 212 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVE 271
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D G+ G+N + + YL +A+ R+ ++G ++ +NPF +M E+ ++
Sbjct: 272 AELQFGRDLCGDGLPGMNTDSMREYLECVADQRLVRLGFPPVYG-SQNPFSFM-ELQGVQ 329
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 330 ELTNFFERRPSAYQVAVEGTVDLD 353
>gi|411004498|ref|ZP_11380827.1| ribonucleoside-diphosphate reductase [Streptomyces globisporus
C-1027]
Length = 339
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 178/315 (56%), Gaps = 11/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 76 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
EI SIR+K +F ++D + K + TK D++ L +LI FA +EGLFFY F +
Sbjct: 136 EIPSIREKAQFCFKWMDSVE--KIERLETKADRRRFLLNLICFAACIEGLFFYGAFAYVY 193
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A+
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAV 253
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E + D +G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ +
Sbjct: 254 EAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYGSE-NPFSFM-ELQGV 311
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE R YQ
Sbjct: 312 QELTNFFERRPSAYQ 326
>gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
scabiei 87.22]
gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
scabiei 87.22]
Length = 355
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 181/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+E E+ ++ R + FF+T D
Sbjct: 35 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSEGEQHMIGRLVAFFATGD 91
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D + F A
Sbjct: 92 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRVAAFAAVE 151
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K EF ++D + L + + + ++ L +LI FA +EGLFFY F +
Sbjct: 152 NIPSIREKAEFCFKWMDSVEKLD-RLESQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 210
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F ++++T++ E P L+ +++ + +A+E
Sbjct: 211 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDELLRQQVTDMLKEAVE 270
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D G+ G+N ++ + YL +A+ R+ ++G ++ +NPF +M E+ ++
Sbjct: 271 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 328
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 329 ELTNFFERRPSAYQVAVEGTVDLD 352
>gi|182436093|ref|YP_001823812.1| ribonucleoside-diphosphate reductase small subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces griseus
XylebKG-1]
gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces griseus subsp. griseus NBRC 13350]
gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces griseus
XylebKG-1]
Length = 338
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 178/315 (56%), Gaps = 11/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
EI SIR+K +F ++D + K TK D++ L +LI FA +EGLFFY F +
Sbjct: 135 EIPSIREKAQFCFRWMDSVE--KIDRLETKADRRRFLLNLICFAACIEGLFFYGAFAYVY 192
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH NF ++++T++ E P+L+ +++ + +A+
Sbjct: 193 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDALQQQVTDMLKEAV 252
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E + D +G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ +
Sbjct: 253 EAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYGSE-NPFSFM-ELQGV 310
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE R YQ
Sbjct: 311 QELTNFFERRPSAYQ 325
>gi|386383363|ref|ZP_10068865.1| Ribonucleoside-diphosphate reductase [Streptomyces tsukubaensis
NRRL18488]
gi|385669178|gb|EIF92419.1| Ribonucleoside-diphosphate reductase [Streptomyces tsukubaensis
NRRL18488]
Length = 342
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 175/314 (55%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 22 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPGEQHLIGRLVAFFATGD 78
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 79 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 138
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K +F ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 139 NIPSIREKAQFCFRWMDQVEKLD-QLDTQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 197
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P L+ E +++ + +A+E
Sbjct: 198 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKEAVE 257
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D G+ G+N ++ + YL+ +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 258 AELQFGRDLCGDGLPGMNTESMREYLQCVADQRLVRLGFAPVYGSE-NPFSFM-ELQGVQ 315
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 316 ELTNFFERRPSAYQ 329
>gi|365866748|ref|ZP_09406352.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces sp. W007]
gi|364003827|gb|EHM24963.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces sp. W007]
Length = 338
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 184/328 (56%), Gaps = 12/328 (3%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
NK +++ ++ L P +Y ++RY + N W +E+++ D+ + L+ E+
Sbjct: 6 NKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---SDLAKLSPGEQH 61
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-- 141
++ R + FF+T DS+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++
Sbjct: 62 MIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLP 121
Query: 142 -GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIM 199
D F+A EI SIR+K +F ++D + K TK D++ L +LI FA +
Sbjct: 122 DPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVE--KIDRLETKADRRRFLLNLICFAACI 179
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EGLFFY F + + + G + ++ RDE+MH NF ++++T++ E P L+
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDA 239
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
+++ + +A+E E + D +G+ G+N ++ + YL +A+ R+ ++G ++ E
Sbjct: 240 LEQQVTDMLREAVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYGSE 299
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQ 347
NPF +M E+ +++ +NFFE R YQ
Sbjct: 300 -NPFSFM-ELQGVQELTNFFERRPSAYQ 325
>gi|389730179|ref|ZP_10189354.1| ribonucleoside-diphosphate reductase [Rhodanobacter sp. 115]
gi|388440951|gb|EIL97271.1| ribonucleoside-diphosphate reductase [Rhodanobacter sp. 115]
Length = 341
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 175/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ Y ++ N W E++ D + ++ +R L+ R + FF+T D
Sbjct: 20 LRPMRYPEFYEMYRNAIKNTWTVDEVDFSLDTTDLNSK--MSAADRHLIHRLIAFFATGD 77
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
++ +NN+VL Y+HI APE R YL RQ +EEA+H Y ++++ D+ E F+A
Sbjct: 78 TIVSNNLVLNLYQHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDQNERAKAFSAIE 137
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K EF +ID + D+ + Q LL +LI FA +EG+FF+ F +
Sbjct: 138 NIPSIRAKGEFCFKWIDSIQDISRLETRAQRRQFLL-NLICFAACIEGMFFFAAFAYVYY 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H F +++ T++ E P+L+ E ++E++ AI
Sbjct: 197 FRSRGLLHGLASGTNWVFRDESCHMAFAFEVVRTVRAEEPDLFDEEMRAQVEEMLEDAIA 256
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G++GL+ K + YL + A+ R+ Q+ + + + +NPF +M ++ ++
Sbjct: 257 CETQFAEDVLSGGVVGLSSKEMRQYLEYCADQRLAQLDLPKKYG-AKNPFDFM-DLQDVQ 314
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 315 EVTNFFERRVSAYQVG 330
>gi|345001978|ref|YP_004804832.1| ribonucleoside-diphosphate reductase [Streptomyces sp. SirexAA-E]
gi|344317604|gb|AEN12292.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SirexAA-E]
Length = 340
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 177/314 (56%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 77 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
EI SIR+K +F ++D + ++ + + ++ L +LI FA +EGLFFY F +
Sbjct: 137 EIPSIREKAQFCFKWMDSVEEID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A+E
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLREAVE 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D +G+ G+N ++ + YL +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 256 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLTRLGFPALYGSE-NPFSFM-ELQGVQ 313
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 314 ELTNFFERRPSAYQ 327
>gi|408680594|ref|YP_006880421.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Streptomyces venezuelae ATCC 10712]
gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Streptomyces venezuelae ATCC 10712]
Length = 338
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 180/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ ++ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPGEQHMIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K +F ++D + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 135 NIPSIREKAQFCFRWMDSVEKID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A+E
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALRQQVTDMLKEAVE 253
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D G+ G+N ++ + YL+ +A+ R++++G ++ E NPF +M E+ ++
Sbjct: 254 AELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYGSE-NPFSFM-ELQGVQ 311
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ G++D +
Sbjct: 312 ELTNFFERRPSAYQVAVEGSVDLD 335
>gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB78]
gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB78]
Length = 345
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 175/314 (55%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---SDLAKLTPGEQHLIGRLVAFFATGD 81
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 141
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K EF +ID + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 142 NIPSIRAKAEFCFKWIDEVEKID-RLESQSDRRRFLLNLICFAACIEGLFFYGAFAYVYW 200
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + E++++ A++
Sbjct: 201 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAVD 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL+ +A+ R+ ++G ++ NPF +M E+ ++
Sbjct: 261 AELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGVQ 318
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 319 ELTNFFERRPSAYQ 332
>gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG]
gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF]
gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces sp. Tu6071]
gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces sp. Tu6071]
Length = 345
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 175/314 (55%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---SDLAKLTPGEQHLIGRLVAFFATGD 81
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 141
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K EF +ID + + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 142 NIPSIRAKAEFCFKWIDEVEKID-RLESRSDRRRFLLNLICFAACIEGLFFYGAFAYVYW 200
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH +F D+++T++ E P L+ + E++++ A++
Sbjct: 201 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAVD 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D G+ G+N ++ + YL+ +A+ R+ ++G ++ NPF +M E+ ++
Sbjct: 261 AELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGVQ 318
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 319 ELTNFFERRPSAYQ 332
>gi|389774176|ref|ZP_10192323.1| ribonucleoside-diphosphate reductase [Rhodanobacter spathiphylli
B39]
gi|388438591|gb|EIL95336.1| ribonucleoside-diphosphate reductase [Rhodanobacter spathiphylli
B39]
Length = 341
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 176/319 (55%), Gaps = 14/319 (4%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQ---RDIELWKNPIGLTEEERRLVKRNLGFFS 93
L P +Y ++ Y ++ N W +E++ RD++ +P +R L++R + FF+
Sbjct: 20 LRPMRYPGFYEMYRNAIRNTWTVEEVDFSMDTRDLDTKMSP-----ADRHLIQRLVAFFA 74
Query: 94 TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFN 150
T D++ +NN+VL Y+HI APE R YL RQ +EEA+H Y ++++ D E F
Sbjct: 75 TGDTIVSNNLVLNLYQHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPTERNAAFA 134
Query: 151 AYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQ 210
A I SIR K F +ID + L+ + ++ ++ L +LI FA +EGLFFY F
Sbjct: 135 AIETIPSIRQKGAFCFKWIDSIQGLQ-RLETREHRRQFLLNLICFAACIEGLFFYAAFAY 193
Query: 211 ILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270
+ L + + G + ++ RDES H F D++ T++ + P L+ +IE++
Sbjct: 194 VYYLRSRGLLHGLAAGTNWVFRDESCHMAFAFDVVRTVRAQEPELFDDAMRAQIEEMMED 253
Query: 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMI 330
AI E +AED + G+ G++VK + YL + A+ R Q+ + + + +NPF +M ++
Sbjct: 254 AIACETQFAEDVLSGGVAGMSVKDMRQYLEYCADQRFVQLDLPKKYG-AKNPFDFM-DLQ 311
Query: 331 HIKKESNFFETRVMEYQSG 349
+++ +NFFE RV YQ G
Sbjct: 312 DVQELANFFERRVSAYQVG 330
>gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase subunit beta [Acidobacterium
capsulatum ATCC 51196]
gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
capsulatum ATCC 51196]
Length = 340
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 178/316 (56%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D + N W +E++ Q D+ K L+ E L++R + FF+T D
Sbjct: 19 LRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQ--RLSPAEVHLIQRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE---LEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ +EEA+H Y ++++ D F A
Sbjct: 77 SIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI K +F + ++D + L + ++ ++ L +LI FA +EGLFF+ F +
Sbjct: 137 NIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAACIEGLFFFAAFAYVYF 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F +++N ++ + P+LW + +I ++ +A++
Sbjct: 196 LRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNVVRSQEPDLWDAQLEADIVEMLHEAVD 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ GL+V+ + YL ++A+ R++++GI F +NPF +M E+ ++
Sbjct: 256 AETQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLQRLGIAPAFGV-KNPFSFM-ELQDVQ 313
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ+
Sbjct: 314 ELTNFFERRVSAYQTA 329
>gi|389799150|ref|ZP_10202153.1| ribonucleoside-diphosphate reductase [Rhodanobacter sp. 116-2]
gi|388443609|gb|EIL99751.1| ribonucleoside-diphosphate reductase [Rhodanobacter sp. 116-2]
Length = 341
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 174/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ Y ++ N W +E++ D ++ +R L++R + FF+T D
Sbjct: 20 LRPMRYPGFYEMYRNAIKNTWTVEEVDFSMDTRDLDTK--MSAADRHLIQRLVAFFATGD 77
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
++ +NN+VL Y+HI APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 78 TIVSNNLVLNLYQHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPAERNGAFAAIE 137
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K F +ID + DL+ + ++ ++ L +LI FA +EGLFFY F +
Sbjct: 138 TIPSIRQKGAFCFKWIDSIQDLR-QLETREHRRQFLLNLICFAACIEGLFFYAAFAYVYY 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F +++ T++ + P L+ ++E++ AI
Sbjct: 197 LRSRGLLHGLAAGTNWVFRDESGHMAFAFEVVRTVRAQEPELFDDAMRAQVEEMMGDAIA 256
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++VK + YL + A+ R Q+ + + + +NPF +M ++ ++
Sbjct: 257 CETQFAEDVLSGGVAGMSVKDMRQYLEYCADQRFVQLDLPKKYG-AKNPFDFM-DLQDVQ 314
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 315 ELANFFERRVSAYQVG 330
>gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
Mg1]
gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
Mg1]
Length = 338
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 180/324 (55%), Gaps = 11/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ ++ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLTPAEQHMIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ +NN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F+A
Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
EI SIR+K +F +I+ + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 135 EIPSIREKAQFCFKWINEVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A++
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVD 253
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D G+ G+N ++ + YL +A+ R+ ++G ++ +NPF +M E+ ++
Sbjct: 254 AELQFGRDLCGDGLPGMNTESMREYLECVADQRLVRLGFAPVYG-SQNPFSFM-ELQGVQ 311
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE R YQ GT+D +
Sbjct: 312 ELTNFFERRPSAYQVAVEGTVDLD 335
>gi|384449845|ref|YP_005662447.1| ribonucleoside-diphosphate reductase beta subunit, truncated
[Chlamydophila pneumoniae LPCoLN]
gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated
[Chlamydophila pneumoniae LPCoLN]
Length = 159
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Query: 17 FERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
+R+ K ++N DVNQLVP KY WAW+ YL+ CAN+W+P E+ M RDIELWK+
Sbjct: 10 LKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKSD- 68
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
L+E+ERR++ NLGFFSTA+SL NNIVL ++HIT PE RQYLLRQAFEEA+HTH +
Sbjct: 69 ELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFL 128
Query: 136 YIVESLGLDELEIFNAYHEIKSI 158
YI ESLGLDE E+FNAY+E SI
Sbjct: 129 YICESLGLDEGEVFNAYNERASI 151
>gi|190572323|ref|YP_001970168.1| ribonucleotide diphosphate reductase small subunit
[Stenotrophomonas maltophilia K279a]
gi|408825288|ref|ZP_11210178.1| ribonucleoside-diphosphate reductase [Pseudomonas geniculata N1]
gi|424666640|ref|ZP_18103666.1| hypothetical protein A1OC_00193 [Stenotrophomonas maltophilia
Ab55555]
gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain
[Stenotrophomonas maltophilia K279a]
gi|401070086|gb|EJP78604.1| hypothetical protein A1OC_00193 [Stenotrophomonas maltophilia
Ab55555]
gi|456737526|gb|EMF62221.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Stenotrophomonas maltophilia EPM1]
Length = 339
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 172/316 (54%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D Y ++ N W +EIN Q DI + ++ ER L+ R + FF+T D
Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F+A
Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + L + Q LL + ACI EGLFF+ F +
Sbjct: 136 NIDSIKKKADFCFKWIDSIQSLTRIETREQRRQFLLNQICFAACI-EGLFFFAAFAYVYY 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H F + + ++ E P+L+ E +++ + +AIE
Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDEEMKQQVYDMLAEAIE 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++ + + YL+ A+ ++G+++ + RNP P+M E+ ++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDVQ 312
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 313 ELTNFFERRVSAYQVG 328
>gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus HD100]
gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus HD100]
Length = 336
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 10/317 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRD-IELWKNPIGLTEEERRLVKRNLGFFSTA 95
L P KY ++ Y + N W E++ D ++L +TE E+ L++R + FF+T
Sbjct: 15 LRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSK---MTESEKHLIRRLVAFFATG 71
Query: 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GLDE-LEIFNAY 152
DS+ NN+VL Y+H+ +PE R YL RQ +EEA+H Y ++++ DE E F A
Sbjct: 72 DSIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAV 131
Query: 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SI+ K +F +ID + +L + ++ ++ L +LI FA +EGLFFY F +
Sbjct: 132 ENIPSIKKKADFCYKWIDSINELT-ELNTIEDRRRFLMNLICFATCVEGLFFYAAFAYVY 190
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F I+++ T + E P L+ + + Q+ AI
Sbjct: 191 FLRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARKEEPELFNQQMEDMVVQMLEDAI 250
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D + G+ GL+ K + YL + A+ R++ + I + +NPF +M E+ +
Sbjct: 251 ECEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYNV-KNPFIFM-ELQDM 308
Query: 333 KKESNFFETRVMEYQSG 349
++ +NFFE RV YQ+G
Sbjct: 309 QELANFFERRVSAYQTG 325
>gi|430741872|ref|YP_007201001.1| ribonucleotide reductase subunit beta [Singulisphaera acidiphila
DSM 18658]
gi|430013592|gb|AGA25306.1| ribonucleotide reductase, beta subunit [Singulisphaera acidiphila
DSM 18658]
Length = 332
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 176/320 (55%), Gaps = 8/320 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ Y ++ N W +E++ D+ I T E+ L++R + FF+T D
Sbjct: 11 LRPMRYPAFFEMYKAAIKNTWTVEEVDFSTDLADLDRRI--TPAEKHLIQRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ NN+VL Y+HI +PE R YL RQ +EE++H H Y ++++ D E F A
Sbjct: 69 SIVGNNLVLNLYQHINSPEARMYLSRQLYEESLHVHFYLTLLDNYLPDMAEREQAFAAIE 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + L + + ++ L +LI FA +EGLFF+ F +
Sbjct: 129 NIPSIKGKADFCFRWIDSIEGLD-RLETRAHRRQFLLNLICFAACIEGLFFFAAFAYVYF 187
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F ++I + E P+L+ ++ + +A+E
Sbjct: 188 LRSKGLLHGLATGTNWVFRDESAHIAFAFNVIAIARREEPDLFDAALEADVVAMMREAVE 247
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D + G++G++++ + YL ++A+ R++ +GI I+ RNP +M E+ ++
Sbjct: 248 CETAFARDVLSFGVVGMSLQDLRKYLEYVADRRLESLGIAPIYG-SRNPLAFM-ELQDVQ 305
Query: 334 KESNFFETRVMEYQSGGTLD 353
+ +NFFE RV YQ G T D
Sbjct: 306 ELANFFERRVSAYQVGVTGD 325
>gi|426403937|ref|YP_007022908.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860605|gb|AFY01641.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 332
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 10/317 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRD-IELWKNPIGLTEEERRLVKRNLGFFSTA 95
L P KY ++ Y + N W E++ D ++L +TE E+ L++R + FF+T
Sbjct: 11 LRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSK---MTESEKHLIRRLVAFFATG 67
Query: 96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GLDE-LEIFNAY 152
DS+ NN+VL Y+H+ +PE R YL RQ +EEA+H Y ++++ DE E F A
Sbjct: 68 DSIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAV 127
Query: 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SI+ K +F +ID + +L + ++ ++ L +LI FA +EGLFFY F +
Sbjct: 128 ENIPSIKKKADFCYKWIDSINELN-ELKTIEDRRRFLMNLICFATCVEGLFFYAAFAYVY 186
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDESMH F I+++ T + E P L+ + + Q+ AI
Sbjct: 187 FLRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARREEPELFNQQMEDMVVQMLEDAI 246
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A D + G+ GL+ K + YL + A+ R++ + I + +NPF +M E+ +
Sbjct: 247 ECEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYNV-KNPFIFM-ELQDM 304
Query: 333 KKESNFFETRVMEYQSG 349
++ +NFFE RV YQ+G
Sbjct: 305 QELANFFERRVSAYQTG 321
>gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
clavuligerus ATCC 27064]
gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein
[Streptomyces clavuligerus ATCC 27064]
gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
ATCC 27064]
gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
clavuligerus ATCC 27064]
gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces clavuligerus ATCC 27064]
gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein
[Streptomyces clavuligerus ATCC 27064]
Length = 339
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 180/322 (55%), Gaps = 11/322 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ L+ R + FF+T D
Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---PDLAKLSPGEQHLIGRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D + F A
Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K +F ++D + L + + ++ L +LI FA +EGLFFY F +
Sbjct: 136 NIPSIREKAQFCFRWMDSVEKLD-QLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A+E
Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVE 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E ++ D G+ G+N ++ + YL+ +A+ R+ ++G ++ E NPF +M E+ ++
Sbjct: 255 AELQFSRDLCGDGLPGMNTESMREYLQCVADQRLARLGFAPVYGSE-NPFSFM-ELQGVQ 312
Query: 334 KESNFFETRVMEYQSG--GTLD 353
+ +NFFE R YQ G++D
Sbjct: 313 ELTNFFERRPSAYQVAVEGSVD 334
>gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein
[Streptomyces pristinaespiralis ATCC 25486]
gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein
[Streptomyces pristinaespiralis ATCC 25486]
Length = 340
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 175/314 (55%), Gaps = 9/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K F ++D + + + + ++ L +LI FA +EGLFFY F +
Sbjct: 137 NIPSIREKASFCFKWMDSVESID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVYW 195
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDE+MH NF ++++T++ E P L+ E +++ + +A+E
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKEAVE 255
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + D +G+ G+N ++ + YL+ +A+ R+ ++G ++ +NPF +M E+ ++
Sbjct: 256 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 313
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE R YQ
Sbjct: 314 ELTNFFERRPSAYQ 327
>gi|352086179|ref|ZP_08953758.1| Ribonucleoside-diphosphate reductase [Rhodanobacter sp. 2APBS1]
gi|351679813|gb|EHA62947.1| Ribonucleoside-diphosphate reductase [Rhodanobacter sp. 2APBS1]
Length = 341
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 173/316 (54%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ Y ++ N W +E++ D ++ +R L++R + FF+T D
Sbjct: 20 LRPMRYPGFYEMYRNAIKNTWTVEEVDFSMDTRDLDTK--MSAADRHLIQRLVAFFATGD 77
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
++ +NN+VL Y+HI APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 78 TIVSNNLVLNLYQHINAPEARMYLSRQLYEEALHVQFYLTLLDAYIPDPAERNGAFAAIE 137
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K F +ID + DL + ++ ++ L +LI FA +EGLFFY F +
Sbjct: 138 TIPSIRQKGAFCFKWIDSIQDLP-QLETREHRRQFLLNLICFAACIEGLFFYAAFAYVYY 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F +++ T++ + P L+ ++E++ AI
Sbjct: 197 LRSRGLLHGLAAGTNWVFRDESGHMAFAFEVVRTVRAQEPELFDDAMRAQVEEMMEDAIA 256
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++VK + YL + A+ R Q+ + + + +NPF +M ++ ++
Sbjct: 257 CETRFAEDVLSGGVAGMSVKDMRQYLEYCADQRFVQLDLPKKYG-AKNPFDFM-DLQDVQ 314
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 315 ELANFFERRVSAYQVG 330
>gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
hepaticus ATCC 51449]
gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
51449]
Length = 349
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 182/329 (55%), Gaps = 13/329 (3%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++I G+ T + L KY WA++ + AN W P+E+NM D + GLT +E+
Sbjct: 26 DRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPDKRDYNG--GLTAQEK 83
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
R L DSL NN++ +IT+PE L+RQA+EEA+H+ +Y +VES+
Sbjct: 84 LGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEALHSQSYAVMVESIS 143
Query: 143 LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
+ EI+N + +R K+ D + ++ + N+Q LLK++ I+EG+
Sbjct: 144 ANTDEIYNMWRVDMQLRSKN-------DNIANVYIELAKNPNEQNLLKAMFA-NQILEGI 195
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
+FY GF L R KM+GS+++ ++I RDE H ++I++++ E +L+T +
Sbjct: 196 YFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMISSLRKEQGHLFTPSLEE 255
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNP 322
E+ ++F KA+E+E + E ILGL + + Y++++A+ R+K +G+ Q++ +NP
Sbjct: 256 EVVEMFKKAVEIESQWGEYITQGQILGLTSEIIREYIQYLADARLKAVGLPQLYG-SKNP 314
Query: 323 FPWMSEMIHIK-KESNFFETRVMEYQSGG 350
W+ + +++NFFE +V Y G
Sbjct: 315 IKWVDQFASFNDQKTNFFEAKVTNYSKGS 343
>gi|357415820|ref|YP_004928840.1| ribonucleoside-diphosphate reductase [Pseudoxanthomonas spadix
BD-a59]
gi|355333398|gb|AER54799.1| Ribonucleoside-diphosphate reductase [Pseudoxanthomonas spadix
BD-a59]
Length = 332
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 174/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D Y + N W +EIN Q DI + +T +R L+ R + FF+T D
Sbjct: 11 LRPMRYPQFYDMYRDAIRNSWTVEEINFQIDIADLHDK--MTPADRHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ + E F A
Sbjct: 69 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPEPGERSKAFAAVD 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR+K F ++D L DL + + ++ L + I FA +EGLFF+ F +
Sbjct: 129 NIASIRNKAGFCFKWMDSLQDLG-RLETRAHRRQFLLNQICFATCIEGLFFFAAFAYVYY 187
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H F + + ++ E P+L+ + ++++ + +AIE
Sbjct: 188 FRSRGLLPGLASGTNWVFRDESCHMAFAFESVRVVREEEPDLFDEQMQQQVQAMLEEAIE 247
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++ + + YL+ A+ ++G+++ + RNP P+M E+ ++
Sbjct: 248 CELQFAEDVLSGGVAGISSRDMRQYLQHCADNHFARLGMERKYNV-RNPLPFM-ELQDVQ 305
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 306 ELTNFFERRVSSYQVG 321
>gi|312962626|ref|ZP_07777115.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
gi|311283001|gb|EFQ61593.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
Length = 136
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 104/136 (76%)
Query: 220 MIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYA 279
M G +E +QYILRDESMH NFGID+IN IK+ENP+LW E +E Q+ L+ +LE YA
Sbjct: 1 MTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYA 60
Query: 280 EDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFF 339
DTMP+G+LG+N + YL+FIAN R+ QIG+K+ +P NPFPWMSE++ +KKE NFF
Sbjct: 61 RDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF 120
Query: 340 ETRVMEYQSGGTLDWE 355
ETRV+EYQ+GG L W+
Sbjct: 121 ETRVIEYQTGGALSWD 136
>gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata
obscuriglobus UQM 2246]
Length = 332
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 174/318 (54%), Gaps = 8/318 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ Y + N W E++ D+ + + T ER L+ R + FF+T D
Sbjct: 11 LRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLRGRV--TPAERHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD---ELEIFNAYH 153
S+ NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D F A
Sbjct: 69 SIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAVD 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + L + + + L +L+ FA +EGLFF+ F +
Sbjct: 129 NIPSIKLKADFCFKWIDSIEGLD-RLETRAHRRAFLLNLVCFAACIEGLFFFAAFAYVYF 187
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F +I+T++ E P+L+ E +I + +A+E
Sbjct: 188 LRSKGLLHGLATGTNWVFRDESAHMAFAFRVIDTVRREEPDLFDAELEAQIVAMLREAVE 247
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A D + +G+ GL++ +SYL ++A+ R++ +GI +F +NPF +M ++ ++
Sbjct: 248 CETAFARDVLGQGVAGLSLADLRSYLEYVADRRLESLGIAPVFG-AKNPFGFM-DLQDVQ 305
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE RV YQ G T
Sbjct: 306 ELTNFFERRVSAYQLGVT 323
>gi|354593391|ref|ZP_09011434.1| ribonucleoside-diphosphate reductase subunit beta [Commensalibacter
intestini A911]
gi|353672502|gb|EHD14198.1| ribonucleoside-diphosphate reductase subunit beta [Commensalibacter
intestini A911]
Length = 322
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 168/316 (53%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D + + HW+P+E+ + D++ W L E ER L+ + FF+ +D +
Sbjct: 9 PFHYPWAYDAWSTQQRLHWIPEEVPLAEDVKDWHK--KLNESERHLITQIFRFFTQSD-V 65
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN+ + Y + P ++ AF E +H AY Y+++++G+ E+E ++A+ K
Sbjct: 66 EVNNVYMKYYSQVFKP-IEVLMMLSAFSNIETVHIAAYSYLLDTIGMPEVE-YSAFLNYK 123
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
+++DK +++ F N ++ K++ VF EGL + F ++ R
Sbjct: 124 AMKDKYDYMQNF------------TVDNPYEIAKTMAVFGAFTEGLQLFATFAILMNFPR 171
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L T ENP LWT EF E+ + +E E
Sbjct: 172 FNKLKGMGQIVSWSVRDETLHCLSIIKLFRTFIQENPYLWTPEFQHELRDICGTIVEHED 231
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G I GL+ T K Y+RFIAN R+ Q+G+ ++ ++NP PWM EM++ +
Sbjct: 232 AFIDLAFEMGDIEGLDAATVKQYIRFIANRRLTQLGVDTLYDIDKNPLPWMDEMLNAVEH 291
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 292 TNFFENRSTEYSRAAT 307
>gi|336453792|ref|YP_004608258.1| ribonucleotide reductase of class Ia (aerobic),subunit beta
[Helicobacter bizzozeronii CIII-1]
gi|335333819|emb|CCB80546.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
[Helicobacter bizzozeronii CIII-1]
Length = 344
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 198/354 (55%), Gaps = 25/354 (7%)
Query: 8 KKKTLKINSFERINKINKQIINGHT----DVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
+KK +S ER ++QI G+ D+NQ+ KY WA + + N W P+E++
Sbjct: 8 RKKIYNPHSTERAQ--DRQIFGGNPTSMFDLNQI---KYPWATKLWKTMLTNTWFPEEVS 62
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
M D + + LT++E+ R L DSL NN++ IT+PE L+RQ
Sbjct: 63 MHGDKNHY---LKLTQQEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQ 119
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
AFEEA+H+H+Y +VES+ + EI+ + +++++K+ D + + +
Sbjct: 120 AFEEALHSHSYAVMVESISANSDEIYEMWRTDEALKNKN-------DCVAQVYMDLAHAH 172
Query: 184 NDQKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGI 242
++ LLK ++FA I+EG++FY GF AL R KM+GS+++ ++I RDE H +
Sbjct: 173 TERNLLK--VLFANQILEGIYFYSGFSFFYALARGGKMLGSAQMIRFIQRDEVTHLSLFQ 230
Query: 243 DLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFI 302
++IN+++ E P+L++ + +E+ +F +A++LE + IL LN K ++Y+ ++
Sbjct: 231 NMINSLRKERPDLFSPDLIEEVIAMFKEAVDLESAWGAYITQGEILDLNPKALRAYIEYL 290
Query: 303 ANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLDWE 355
A+ R+ +G+ +++ + +NP W+ + + SNFFE RV Y S G+L +E
Sbjct: 291 ADTRLAVVGLPKLY-HTKNPLKWVDQFANFNSHRSNFFEARVSNY-SKGSLSFE 342
>gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain
[Plesiocystis pacifica SIR-1]
gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain
[Plesiocystis pacifica SIR-1]
Length = 356
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 171/324 (52%), Gaps = 10/324 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y + +Y + N W +E++ D+ +G ER L++R + FF+T D
Sbjct: 35 LRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMG--PAERHLIQRLVAFFATGD 92
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ ANN+VL YRH+ APE R YL RQ +EEA+H Y ++++ D + F A
Sbjct: 93 SIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPDQRHAAFAAVE 152
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SIR K EF + + D + + G Q LL +LI FA EGLFFY F +
Sbjct: 153 TIPSIRRKAEFCLRWQDTVAAIPRLDGPAHRRQFLL-NLICFAACTEGLFFYGAFAYVYF 211
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F +I+ ++ + P L+ E + ++ +A+
Sbjct: 212 LRSRGLLHGLAAGTNWVFRDESAHMAFAFSVIDVVRDQEPELFDAELEAAVVEMIEEAVA 271
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ GL V ++YL + A+ R++++G+ + NP +M E+ I
Sbjct: 272 CEVAFAEDLLGLGVAGLTVADLRAYLEYCADQRLQRLGMATRYG-STNPLSFM-ELQDIP 329
Query: 334 KESNFFETRVMEYQSG--GTLDWE 355
+ +NFFE RV YQ G GT+D +
Sbjct: 330 ELANFFERRVSAYQHGVSGTIDLD 353
>gi|194363985|ref|YP_002026595.1| ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
R551-3]
gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
R551-3]
Length = 339
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 174/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y +D Y ++ N W +EIN Q DI + ++ ER L+ R + FF+T D
Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHSK--MSPGERHLIHRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD---ELEIFNAYH 153
S+ +NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D ++ F A
Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPDERVKAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K +F +ID + +LK + Q LL + ACI EGLFF+ F +
Sbjct: 136 NIDSIKKKADFCFKWIDSIQNLKRIETREERRQFLLNQICFAACI-EGLFFFAAFAYVYY 194
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
+ + G + ++ RDES H +F + ++ I+ E P+L+ + +++ + +AIE
Sbjct: 195 FRSRGLLNGLASGTNWVFRDESAHMDFAFECVDVIREEEPDLFDDKMKQDVYDMLAEAIE 254
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ G++ + + YL+ A+ ++G+++ + RNP +M E+ ++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADNHFHRLGMERKYNV-RNPLSFM-ELQDVQ 312
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE R YQ G
Sbjct: 313 ELTNFFERRASAYQVG 328
>gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces jumonjinensis]
Length = 322
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 173/310 (55%), Gaps = 11/310 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + LT E+ L+ R + FF+T D
Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---TDLAKLTPGEQHLIGRLVAFFATGD 75
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D F A
Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 135
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIR+K +F ++D + K T+ D++ L +LI FA +EGLFFY F +
Sbjct: 136 NIPSIREKAQFCFKWMDSVE--KIDQLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 193
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A+
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLQEAV 253
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E + D G+ G+N ++ + YL+ +A+ R+ ++G ++ E NPF +M E+ +
Sbjct: 254 EAELQFGSDLCGDGLPGMNTESMREYLQCVADQRLTRLGFAPVYGSE-NPFSFM-ELQGV 311
Query: 333 KKESNFFETR 342
++ +NFFE R
Sbjct: 312 QELTNFFERR 321
>gi|405354037|ref|ZP_11023446.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Chondromyces apiculatus DSM 436]
gi|397092728|gb|EJJ23477.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Myxococcus sp. (contaminant ex DSM 436)]
Length = 336
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 179/315 (56%), Gaps = 10/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y ++ Y ++ N W +E++ D+ ++ +T+ ER L+ R + FF+T D
Sbjct: 11 LRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 69 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPAERAKAFAAVD 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTK-NDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SI+ K +F + ++D + + T TK + ++ L +LI FA +EGLFF+ F +
Sbjct: 129 NIPSIQRKAQFCMKWMDSIQGMD--TLQTKAHRRQFLLNLICFAGCIEGLFFFAAFAYVY 186
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDES H F + I + E P+L+ + +++ + +A+
Sbjct: 187 FLRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVARKEEPDLFDAQMERDVVAMLREAV 246
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+ E +A+D + G++GL+V+ + YL ++A+ R++Q+G+ +F +NP +M ++ +
Sbjct: 247 DCETQFAQDLLSGGVVGLSVQDMRGYLEYVADQRLQQLGMSPVFG-TKNPLHFM-DLQDV 304
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE RV YQ
Sbjct: 305 QELTNFFERRVSSYQ 319
>gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus
xanthus DK 1622]
gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus
xanthus DK 1622]
Length = 349
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 178/315 (56%), Gaps = 10/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y ++ Y ++ N W +E++ D+ ++ +T+ ER L+ R + FF+T D
Sbjct: 24 LRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 81
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 82 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPAERAMAFAAVD 141
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTK-NDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SI+ K +F + ++D + L T TK + ++ L +LI FA +EGLFF+ F +
Sbjct: 142 NIPSIQRKAQFCMKWMDSIQGLD--TLQTKAHRRQFLLNLICFAGCIEGLFFFAAFAYVY 199
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDES H F + I + E P+L+ + +++ + +A+
Sbjct: 200 FLRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVARKEEPDLFDAQMERDVVAMLREAV 259
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E +A+D + G++GL+V+ + YL ++A+ R++ +G+ +F +NP +M ++ +
Sbjct: 260 ECETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQMLGMTPVFG-TKNPLHFM-DLQDV 317
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE RV YQ
Sbjct: 318 QELTNFFERRVSSYQ 332
>gi|410943722|ref|ZP_11375463.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
frateurii NBRC 101659]
Length = 340
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 171/316 (54%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE ER LV + FF+ +D +
Sbjct: 28 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTEAERHLVTQIFRFFTQSD-V 84
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
N+ + Y + P ++ +F E +H AY ++++++G+ E E ++A+ + K
Sbjct: 85 EVNSAYMKYYSQVFKP-TEVLMMLSSFSNIETVHIAAYSHLLDTIGMPETE-YSAFLKYK 142
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +F+ F N N +++ K++ F MEGL + F +L R
Sbjct: 143 EMKDKYDFMQSF------------NIANKREIAKTMAAFGAFMEGLQLFASFAILLNFPR 190
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L T ENP LWT +F +E+ Q+ +E E
Sbjct: 191 FNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFIRENPELWTEDFREELTQICKTTVEHED 250
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + G+ K+Y+RFIA+ R+ Q+G+ ++ E NP PW+ +M++ +
Sbjct: 251 AFIDLCFEMGPVEGMTPADVKTYIRFIADRRLTQLGLDPVYGVEENPLPWIDDMLNAVEH 310
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 311 ANFFENRSTEYSRAST 326
>gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella
aurantiaca DW4/3-1]
gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
aurantiaca DW4/3-1]
Length = 336
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 173/314 (55%), Gaps = 8/314 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y ++ Y ++ N W +E++ D+ ++ +T+ ER L+ R + FF+T D
Sbjct: 11 LRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL---GLDELEIFNAYH 153
S+ NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D + F A
Sbjct: 69 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPADRAKAFAAID 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI+ K F + ++D + DL + ++ ++ L +LI FA +EGLFF+ F +
Sbjct: 129 NIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFAGCIEGLFFFAAFAYVYF 187
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F + I + E P+L+ ++ + +A+E
Sbjct: 188 LRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEPDLFDARMQADVVAMMREAVE 247
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +A+D + G+ GL+V+ + YL ++A+ R+ +G+ +F +N P+M ++ ++
Sbjct: 248 CETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLAPVFRV-KNSLPFM-DLQDVQ 305
Query: 334 KESNFFETRVMEYQ 347
+ +NFFE RV YQ
Sbjct: 306 ELTNFFERRVSAYQ 319
>gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pullorum MIT 98-5489]
gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pullorum MIT 98-5489]
Length = 341
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 191/346 (55%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+KK NS E +N+ ++I G+ T + +L KY WA++ + AN W P+E+NM
Sbjct: 3 NRKKIYNPNSNESVNE--RKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMT 60
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
+D + + GLT EE+ R L DSL NN++ +IT+PE L+RQAF
Sbjct: 61 QDKRDYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAF 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+ +Y +VES+ + EI+ + +R K++++ + L +
Sbjct: 119 EEALHSQSYAVMVESISANTDEIYEMWRTDMQLRSKNDYIAEVYEQL-------ATNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ ++K++ I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 RNIIKAMFA-NQILEGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+ K E+P +T + +E+ ++F +A+++E + E ILGL + + Y++++A+
Sbjct: 231 NSTKKESPEFFTKDLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADD 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R++++G+ ++ ++P W+ ++++NFFE V Y G
Sbjct: 291 RLRRVGLPVLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335
>gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
oxydans 621H]
gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter
oxydans 621H]
Length = 339
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 171/316 (54%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE ER LV + FF+ +D +
Sbjct: 27 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTEAERHLVTQIFRFFTQSD-V 83
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
N+ + Y + P ++ AF E IH AY ++++++G+ E E ++A+ + K
Sbjct: 84 EVNSAYMKYYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 141
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +F+ F N N +++ K++ F MEGL + F +L R
Sbjct: 142 EMKDKYDFMQSF------------NIDNKREIAKTMAAFGAFMEGLQLFASFAILLNFPR 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L T EN +WT EF +E+ Q+ +E E
Sbjct: 190 FNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFVRENSEIWTPEFREELTQICRTTVEHED 249
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + G++ + K Y+RFIA+ R+ Q+G+ ++ E NP PW+ +M++ +
Sbjct: 250 AFIDLCFEMGPVEGMSSEDVKRYIRFIADRRLTQLGLDPVYGQESNPLPWIDDMLNAVEH 309
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 310 ANFFENRSTEYSRAST 325
>gi|357031056|ref|ZP_09093000.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
morbifer G707]
gi|356415750|gb|EHH69393.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
morbifer G707]
Length = 375
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 170/316 (53%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE ER LV + FF+ +D +
Sbjct: 63 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWHR--TLTEAERHLVTQIFRFFTQSD-V 119
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
N+ + Y + P ++ F E IH AY ++++++G+ E E ++A+ + K
Sbjct: 120 EVNSAYMKYYSQVFKP-TEVLMMLSCFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 177
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +F+ F N + +++ K++ F MEGL + F +L R
Sbjct: 178 EMKDKYDFMQSF------------NINDKREIAKTMAAFGAFMEGLQLFASFAILLNFPR 225
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L T ENP LWT EF +E+ Q+ +E E
Sbjct: 226 FNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFIRENPELWTPEFREELTQICRTTVEHED 285
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL + K+Y+RFIA+ R+ Q+G+ ++ E NP PW+ M++ +
Sbjct: 286 AFIDLCFEMGPVEGLTAQDVKNYIRFIADRRLTQLGLDPVYGEEDNPLPWIDHMLNAVEH 345
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 346 ANFFENRSTEYSRAST 361
>gi|414344479|ref|YP_006986000.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
oxydans H24]
gi|411029814|gb|AFW03069.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
oxydans H24]
gi|453330766|dbj|GAC87093.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
thailandicus NBRC 3255]
Length = 340
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 172/316 (54%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE E+ LV + FF+ AD +
Sbjct: 28 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTEAEQHLVTQIFRFFTQAD-V 84
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
N+ + Y + P ++ +F E IH AY ++++++G+ E E ++A+ + K
Sbjct: 85 EVNSAYMKYYSQVFKP-TEVLMMLSSFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 142
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +F+ F N N +++ K++ F MEGL + F +L R
Sbjct: 143 EMKDKYDFMQSF------------NIDNKREIAKTMAAFGAFMEGLQLFASFAILLNFPR 190
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L T ENP LWT +F +E++++ +E E
Sbjct: 191 FNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFIRENPELWTEDFREELKEICRTTVEHED 250
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + G++ K Y+RFIA+ R+ Q+G+ ++ E NP PW+ +M++ +
Sbjct: 251 AFIDLAFEMGPVEGMSSNDVKRYIRFIADRRLTQLGLDPVYGEEENPLPWIDDMLNAVEH 310
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 311 ANFFENRSTEYSRAST 326
>gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
mustelae 12198]
gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
mustelae 12198]
Length = 344
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 191/349 (54%), Gaps = 15/349 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK S E +N +++I G+ T + L KY WA+D + + AN W P+E++M
Sbjct: 7 DRKKIYNPESIESVN--DRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVSMN 64
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D + N LT +E+ R L DSL NN++ +IT+PE L+RQA+
Sbjct: 65 EDKRDYNNL--LTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAY 122
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+ +Y +VES+ + EI++ + ++ K+ D + ++ K +
Sbjct: 123 EEALHSQSYAVMVESISANTDEIYDMWRVDMQLKSKN-------DYIANVYMKLAQNPTE 175
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ ++K++ I+EG++FY GF AL KM+GSS++ ++I RDE H ++I
Sbjct: 176 RNIVKAMFA-NQILEGIYFYSGFAFFYALASTGKMLGSSQMIRFIQRDEVTHLILFQNMI 234
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
T+K E P+L+ + +EI ++F +A+E+E + E ILGL + Y++++A+
Sbjct: 235 RTLKKERPDLFDKDLEEEIVEMFRRAVEIEAAWGEYITQGQILGLTGEVIHQYIQYLADQ 294
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLD 353
R+ ++G+ +++ E +P W+ + ++ +NFFE +V Y G +D
Sbjct: 295 RLSKVGMPKLYNVE-HPIKWVEQYASFNEQRTNFFEAKVTNYAKGSLID 342
>gi|338536259|ref|YP_004669593.1| ribonucleoside-diphosphate reductase [Myxococcus fulvus HW-1]
gi|337262355|gb|AEI68515.1| Ribonucleoside-diphosphate reductase [Myxococcus fulvus HW-1]
Length = 336
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 178/315 (56%), Gaps = 10/315 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P Y ++ Y ++ N W +E++ D+ ++ +T+ ER L+ R + FF+T D
Sbjct: 11 LRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 68
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 69 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPGERAKAFAAID 128
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTK-NDQKLLKSLIVFACIMEGLFFYVGFVQIL 212
I SI+ K +F + ++D + L T TK + ++ L +LI FA +EGLFF+ F +
Sbjct: 129 NIPSIQRKAQFCMKWMDSIQGLD--TLQTKAHRRQFLLNLICFAGCIEGLFFFAAFAYVY 186
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
L + + G + ++ RDES H F + I + E P+L+ + +++ + +A+
Sbjct: 187 FLRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVARKEEPDLFDAQMERDVVAMLREAV 246
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+ E +A+D + G++GL+V+ + YL ++A+ R++ +G+ +F +NP +M ++ +
Sbjct: 247 DCETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQMLGMSPVFG-TKNPLHFM-DLQDV 304
Query: 333 KKESNFFETRVMEYQ 347
++ +NFFE RV YQ
Sbjct: 305 QELTNFFERRVSSYQ 319
>gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
felis ATCC 49179]
gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
ATCC 49179]
Length = 347
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 185/327 (56%), Gaps = 17/327 (5%)
Query: 30 GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNL 89
G D+NQ+ KY WA + + N W P+E++M D + + L+ +E+ R L
Sbjct: 35 GMFDLNQI---KYQWAHKIWKTMLHNTWFPEEVSMHGDKTHY---LKLSTQEKIGYDRAL 88
Query: 90 GFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIF 149
DSL NN++ IT+PE L+RQA+EEA+H+H+Y +VES+ + EI+
Sbjct: 89 AQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHSYAVMVESISANSDEIY 148
Query: 150 NAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFV 209
+ +++++K+ D + + +T+ ++ LLK+L+ I+EG++FY GF
Sbjct: 149 EMWRTDEALKNKN-------DCVAQVYMDLAHTQTERNLLKALVA-NQILEGIYFYSGFS 200
Query: 210 QILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFL 269
AL R KM+GS+++ ++I RDE H +I+T+K E P+L++ + +EI ++F
Sbjct: 201 FFYALARSGKMLGSAQMIRFIQRDEVTHLALFQSMIHTLKKERPDLFSKDLVEEILEMFK 260
Query: 270 KAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
+A++LE + IL LN T ++Y+ ++A+ R+ IG+ +I+ + ++P W+ +
Sbjct: 261 EAVDLESTWGRVITQGEILDLNPVTLRAYIEYLADTRLHAIGLPKIY-HTKHPMRWVDQF 319
Query: 330 IHIKKE-SNFFETRVMEYQSGGTLDWE 355
+ SNFFE RV Y S G+L +E
Sbjct: 320 SSFNSQRSNFFEARVSNY-SKGSLSFE 345
>gi|347759911|ref|YP_004867472.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter xylinus NBRC 3288]
gi|347578881|dbj|BAK83102.1| ribonucleotide-diphosphate reductase beta subunit
[Gluconacetobacter xylinus NBRC 3288]
Length = 333
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 167/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE ER LV + FF+ +D +
Sbjct: 25 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTESERHLVTQIFRFFTQSD-V 81
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E E ++A+ + K
Sbjct: 82 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 139
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + ++ ++ ++L F EGL + F +L R
Sbjct: 140 EMKDKYDYMQQF------------SVSDNYQIARTLAAFGAFTEGLQLFASFAILLNFPR 187
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDES+HC+ L ENP +WT +I Q+ +E E
Sbjct: 188 HNKLKGMGQIVSWSVRDESLHCDSMARLFRVFVQENPEIWTDTLRDDIRQICRDIVEHED 247
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + + G + GL+ + K Y+RF+AN R+ Q+G+ I+ NP PW+ EM++ +
Sbjct: 248 AFIDLSFEMGAVEGLDAEQVKRYIRFVANRRLGQLGLDGIYDIATNPLPWVDEMVNAVEH 307
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 308 ANFFENRATEYSRAST 323
>gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit
[Gluconacetobacter sp. SXCC-1]
gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit
[Gluconacetobacter sp. SXCC-1]
Length = 365
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 166/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE ER LV + FF+ +D +
Sbjct: 57 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTESERHLVTQIFRFFTQSD-V 113
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E E ++A+ + K
Sbjct: 114 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 171
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + ++ ++ ++L F EGL + F +L R
Sbjct: 172 EMKDKYDYMQQF------------SVSDNYQIARTLAAFGAFTEGLQLFASFAILLNFPR 219
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDES+HC+ L ENP +WT +I Q+ +E E
Sbjct: 220 HNKLKGMGQIVSWSVRDESLHCDSMARLFRVFVQENPEIWTDTLRDDIRQICRDIVEHED 279
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + + G + GL+ K Y+RF+AN R+ Q+G+ I+ NP PW+ EM++ +
Sbjct: 280 AFIDLSFEMGAVEGLDAGQVKRYIRFVANRRLGQLGLDGIYDIATNPLPWVDEMVNAVEH 339
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 340 ANFFENRATEYSRAST 355
>gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
winghamensis ATCC BAA-430]
gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
winghamensis ATCC BAA-430]
Length = 343
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 191/346 (55%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + +L KY WA++ + AN W P+E+NM
Sbjct: 5 HRKKIYNPNSKESVNE--RRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMT 62
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
+D + + GLT EE+ R L DSL NN++ +IT+PE L+RQAF
Sbjct: 63 QDKRDYSD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAF 120
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+ +Y +VES+ + EI+ + ++ K++++ +V +L +
Sbjct: 121 EEALHSQSYAVMVESISANTDEIYEMWRTDIQLKSKNDYIA---NVYEELSVN----PTE 173
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
LLK++ I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 174 SILLKAMFA-NQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMI 232
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T + +E+ ++F +A+ +E + E ILGL + Y+R++A+
Sbjct: 233 NSLRKEMPHLFTKDLIEEVLEMFREAVRVESTWGEYITQGQILGLTSEIIHEYIRYLADN 292
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ ++G+ ++ R+P W+ ++++NFFE V Y G
Sbjct: 293 RLTRVGLPALYN-ARHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 337
>gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor
sp. SB155-2]
gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor
sp. SB155-2]
Length = 341
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 197/351 (56%), Gaps = 17/351 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK S E +N+ +++ G T + +L KY WA++ + AN W P+E++M
Sbjct: 4 HRKKIYNPESHESVNE--RKVFGGDPTGIFELNKIKYQWAYNLWEMMLANTWFPKEVDMT 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
+D +K LT+ E+ + L DSL NN++ +ITAPE L+RQAF
Sbjct: 62 QDARDYK---LLTDAEKLAYDKVLAQLIFMDSLQTNNLIDNVNPYITAPEINLILVRQAF 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+ +Y +V+S+ + EI+ + E ++ K++++ + L +D
Sbjct: 119 EEALHSQSYAVMVDSISQNTDEIYELWREDLQLKQKNDYIAHVYEEL-------AANPSD 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ ++K++ I+EG++FY GF + L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENIVKAMFA-NQILEGIYFYSGFTYMYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
NT+K E P L+T E ++ ++F A++LE + + ILGL + + Y++++A+
Sbjct: 231 NTVKKERPELFTKELIDDVYKMFEGAVDLETSWGKYITQGQILGLTDEIIEQYIKYLADD 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGGTLDWE 355
R+K++G++ ++ E +P W+ + +++NFFE V Y S G+LD++
Sbjct: 291 RLKRVGLEPMYNVE-HPIKWVDDFSKFNDQKTNFFEGNVTNY-SKGSLDFD 339
>gi|420441859|ref|ZP_14940803.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-36]
gi|393059473|gb|EJB60352.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-36]
Length = 341
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 187/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T++ E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTSQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
canadensis MIT 98-5491]
gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
canadensis MIT 98-5491]
gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
canadensis MIT 98-5491]
gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
canadensis MIT 98-5491]
Length = 341
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 194/346 (56%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + +L KY WA++ + AN W P+E+NM
Sbjct: 3 HRKKIYNPSSNESVNE--RRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMT 60
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
+D + + GLT EE+ R L DSL NN++ +IT+PE L+RQAF
Sbjct: 61 QDKRDYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAF 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+ +Y +VES+ + EI++ + ++ K++++ + L +
Sbjct: 119 EEALHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQL-------ATNPIE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ ++K++ I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 RNIIKAMFA-NQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N++K E+P L+T + +E+ ++F +A+++E + E ILGL + + Y++++A+
Sbjct: 231 NSVKKESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADE 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+++IG+ ++ ++P W+ ++++NFFE V Y G
Sbjct: 291 RLRRIGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335
>gi|349700270|ref|ZP_08901899.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter europaeus LMG 18494]
Length = 336
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 165/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE ER LV + FF+ +D +
Sbjct: 29 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTESERHLVTQIFRFFTQSD-V 85
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E E ++A+ + K
Sbjct: 86 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 143
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + ++ ++ ++L F EGL + F +L R
Sbjct: 144 EMKDKYDYMQQF------------SVGDNYQIARTLAAFGAFTEGLQLFASFAILLNFPR 191
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDES+HC+ L ENP +WT +I Q+ +E E
Sbjct: 192 HNKLKGMGQIVSWSVRDESLHCDSMARLFRVFVHENPEIWTDTLRDDIRQICRDIVEHED 251
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL+ K Y+RF+AN R+ Q+G+ I+ NP PW+ EM++ +
Sbjct: 252 AFIDLAFEMGAVEGLDAGQVKQYIRFVANRRLGQLGLDGIYDIATNPLPWVDEMVNAVEH 311
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 312 TNFFENRATEYSRAST 327
>gi|420440160|ref|ZP_14939119.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-30]
gi|393057150|gb|EJB58054.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-30]
Length = 341
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|385219315|ref|YP_005780790.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Gambia94/24]
gi|420429127|ref|ZP_14928160.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-17]
gi|420432202|ref|ZP_14931220.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-16]
gi|420451701|ref|ZP_14950552.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-6]
gi|420461743|ref|ZP_14960532.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-3]
gi|420473909|ref|ZP_14972586.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-19]
gi|420479005|ref|ZP_14977656.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-34]
gi|420483763|ref|ZP_14982392.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-3]
gi|420490535|ref|ZP_14989120.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-13]
gi|420498130|ref|ZP_14996689.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-25]
gi|420499199|ref|ZP_14997755.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-26]
gi|420514350|ref|ZP_15012822.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-3b]
gi|420524396|ref|ZP_15022805.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-13b]
gi|420527867|ref|ZP_15026260.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-25c]
gi|420529635|ref|ZP_15028021.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-25d]
gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Gambia94/24]
gi|393044457|gb|EJB45449.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-17]
gi|393047857|gb|EJB48826.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-16]
gi|393070059|gb|EJB70850.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-6]
gi|393081101|gb|EJB81825.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-3]
gi|393089773|gb|EJB90409.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-19]
gi|393095934|gb|EJB96534.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-34]
gi|393101799|gb|EJC02366.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-3]
gi|393108099|gb|EJC08635.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-13]
gi|393111369|gb|EJC11891.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-25]
gi|393132493|gb|EJC32913.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-13b]
gi|393134413|gb|EJC34824.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-25c]
gi|393136841|gb|EJC37230.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-25d]
gi|393151401|gb|EJC51704.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-26]
gi|393156899|gb|EJC57161.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-3b]
Length = 341
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|386750234|ref|YP_006223441.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cetorum MIT 00-7128]
gi|384556477|gb|AFI04811.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cetorum MIT 00-7128]
Length = 341
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA D + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADDLWKMMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + ++ + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRTDMQLKSKN-------DYIAEVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ ++K+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENIIKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLISEVIEMFKKAVEIESAWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIPKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420504055|ref|ZP_15002584.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-62]
gi|393154887|gb|EJC55165.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-62]
Length = 341
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain
[Streptomyces microflavus]
Length = 321
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 175/310 (56%), Gaps = 11/310 (3%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++RY + N W +E+++ D+ + L+ E+ ++ R + FF+T D
Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---ADLAKLSPGEQHMIGRLVAFFATGD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAY---H 153
S+ ANN+VL Y+HI +PE R YL RQ FEEA+H Y ++++ D E A+
Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPAERAAAFAAVE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQIL 212
I SIRDK +F ++D + K T+ D++ L +LI FA +EGLFFY F +
Sbjct: 135 NIPSIRDKAQFCFKWMDSVE--KIDQLETRADRRRFLLNLICFAACIEGLFFYGAFAYVY 192
Query: 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI 272
+ + G + ++ RDE+MH NF ++++T++ E P L+ +++ + +A+
Sbjct: 193 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQEQVTAMLKEAV 252
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E E + D +G+ G+N ++ + YL+ +A+ R+ ++G ++ E NPF +M E+ +
Sbjct: 253 EAELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYGSE-NPFAFM-ELQGV 310
Query: 333 KKESNFFETR 342
++ +NFFE R
Sbjct: 311 QELTNFFERR 320
>gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase subunit beta [Acidiphilium
multivorum AIU301]
gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
multivorum AIU301]
Length = 338
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 168/316 (53%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ +L+ HW+P+E+ + D++ W LT ER L+ + FF+ AD +
Sbjct: 31 PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWHR--NLTPGERNLLTQIFRFFTQAD-V 87
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E+E ++A+ + K
Sbjct: 88 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKYK 145
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + ++ K+L F EGL + F +L R
Sbjct: 146 EMKDKYDYMQEF------------SVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 193
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDES+HCN I L T ENP +WT E +EI ++ E
Sbjct: 194 FNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYLCCATIVDHED 253
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL + K Y+R+IA+ R+ Q+G+ +F ++NP PW+ EM++ +
Sbjct: 254 AFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPWLDEMLNAVEH 313
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 314 TNFFENRATEYSKAST 329
>gi|338989340|ref|ZP_08634195.1| NrdF [Acidiphilium sp. PM]
gi|338205730|gb|EGO94011.1| NrdF [Acidiphilium sp. PM]
Length = 338
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 168/316 (53%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ +L+ HW+P+E+ + D++ W LT ER L+ + FF+ AD +
Sbjct: 31 PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWHR--NLTPGERNLLTQIFRFFTQAD-V 87
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E+E ++A+ + K
Sbjct: 88 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKYK 145
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + ++ K+L F EGL + F +L R
Sbjct: 146 EMKDKYDYMQEF------------SVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 193
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDES+HCN I L T ENP +WT E +EI ++ E
Sbjct: 194 FNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYLCCATIVDHED 253
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL + K Y+R+IA+ R+ Q+G+ +F ++NP PW+ EM++ +
Sbjct: 254 AFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPWLDEMLNAVEH 313
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 314 TNFFENRATEYSKAST 329
>gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium
cryptum JF-5]
gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5]
Length = 338
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 168/316 (53%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ +L+ HW+P+E+ + D++ W LT ER L+ + FF+ AD +
Sbjct: 31 PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWHR--NLTPGERNLLTQIFRFFTQAD-V 87
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E+E ++A+ + K
Sbjct: 88 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKYK 145
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + ++ K+L F EGL + F +L R
Sbjct: 146 EMKDKYDYMQEF------------SVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 193
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDES+HCN I L T ENP +WT E +EI ++ E
Sbjct: 194 FNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYLCCATIVDHED 253
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL + K Y+R+IA+ R+ Q+G+ +F ++NP PW+ EM++ +
Sbjct: 254 AFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPWLDEMLNAVEH 313
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 314 TNFFENRATEYSKAST 329
>gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori J99]
gi|384891446|ref|YP_005765579.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter
pylori 908]
gi|385224122|ref|YP_005784048.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter
pylori 2017]
gi|385231979|ref|YP_005791898.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter
pylori 2018]
gi|420425093|ref|ZP_14924156.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-5]
gi|420433707|ref|ZP_14932714.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-24]
gi|420438926|ref|ZP_14937899.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-29]
gi|420445369|ref|ZP_14944282.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-42]
gi|420463489|ref|ZP_14962267.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-4]
gi|420468561|ref|ZP_14967302.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-10]
gi|420477039|ref|ZP_14975700.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-23]
gi|420481140|ref|ZP_14979780.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-1]
gi|420482634|ref|ZP_14981270.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-2]
gi|420485910|ref|ZP_14984527.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-4]
gi|420487132|ref|ZP_14985739.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-8]
gi|420488754|ref|ZP_14987353.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-11]
gi|420503099|ref|ZP_15001634.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-41]
gi|420507437|ref|ZP_15005949.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-24b]
gi|420509464|ref|ZP_15007965.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-24c]
gi|420511587|ref|ZP_15010072.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-1b]
gi|420513085|ref|ZP_15011567.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-2b]
gi|420516386|ref|ZP_15014848.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-4c]
gi|420518269|ref|ZP_15016721.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-4d]
gi|420519500|ref|ZP_15017943.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-5b]
gi|420521595|ref|ZP_15020024.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-8b]
gi|420522849|ref|ZP_15021272.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-11b]
gi|420531226|ref|ZP_15029600.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-28b]
gi|420532989|ref|ZP_15031351.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M1]
gi|420534436|ref|ZP_15032786.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M2]
gi|420538172|ref|ZP_15036501.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M4]
gi|420539669|ref|ZP_15037987.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M5]
gi|420540639|ref|ZP_15038949.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M6]
gi|420542615|ref|ZP_15040911.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M9]
gi|421711765|ref|ZP_16151107.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R030b]
gi|11387046|sp|Q9ZKC3.1|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
pylori J99]
gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter
pylori 908]
gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter
pylori 2018]
gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter
pylori 2017]
gi|393042339|gb|EJB43349.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-5]
gi|393050695|gb|EJB51650.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-24]
gi|393055580|gb|EJB56496.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-29]
gi|393062467|gb|EJB63320.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-42]
gi|393081017|gb|EJB81742.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-4]
gi|393087671|gb|EJB88328.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-10]
gi|393094202|gb|EJB94813.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-23]
gi|393094723|gb|EJB95329.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-1]
gi|393098476|gb|EJB99065.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-2]
gi|393101722|gb|EJC02290.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-4]
gi|393104019|gb|EJC04579.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-8]
gi|393108230|gb|EJC08765.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-11]
gi|393118258|gb|EJC18755.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-1b]
gi|393118605|gb|EJC19101.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-24b]
gi|393118860|gb|EJC19352.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-24c]
gi|393122453|gb|EJC22927.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-4d]
gi|393122827|gb|EJC23297.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-4c]
gi|393126165|gb|EJC26616.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-8b]
gi|393126943|gb|EJC27389.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-5b]
gi|393129266|gb|EJC29701.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-11b]
gi|393137449|gb|EJC37833.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-28b]
gi|393139254|gb|EJC39633.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M1]
gi|393141661|gb|EJC42019.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M2]
gi|393144364|gb|EJC44704.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M4]
gi|393146565|gb|EJC46891.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M5]
gi|393148615|gb|EJC48936.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M6]
gi|393150536|gb|EJC50843.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-41]
gi|393156500|gb|EJC56764.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-2b]
gi|393160185|gb|EJC60433.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M9]
gi|407211715|gb|EKE81581.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R030b]
Length = 341
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420423398|ref|ZP_14922470.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-4]
gi|420456748|ref|ZP_14955568.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-16]
gi|420472112|ref|ZP_14970807.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-18]
gi|420475616|ref|ZP_14974286.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-21]
gi|420492173|ref|ZP_14990748.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-15]
gi|420536660|ref|ZP_15035001.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M3]
gi|425432701|ref|ZP_18813251.1| ribonucleoside-diphosphate reductase, beta subunit [Helicobacter
pylori GAM100Ai]
gi|393041868|gb|EJB42881.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-4]
gi|393074780|gb|EJB75538.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-16]
gi|393089855|gb|EJB90490.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-18]
gi|393092119|gb|EJB92743.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-21]
gi|393107974|gb|EJC08513.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-15]
gi|393142659|gb|EJC43012.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp M3]
gi|410714756|gb|EKQ72207.1| ribonucleoside-diphosphate reductase, beta subunit [Helicobacter
pylori GAM100Ai]
Length = 341
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420525938|ref|ZP_15024340.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-15b]
gi|393132683|gb|EJC33102.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-15b]
Length = 341
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|208434985|ref|YP_002266651.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori G27]
gi|420446750|ref|ZP_14945646.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-43]
gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
pylori G27]
gi|393064736|gb|EJB65568.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-43]
Length = 341
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|383749295|ref|YP_005424398.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori ELS37]
gi|380874041|gb|AFF19822.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori ELS37]
Length = 341
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|425789631|ref|YP_007017551.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Aklavik117]
gi|425627946|gb|AFX91414.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Aklavik117]
Length = 341
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|385227273|ref|YP_005787197.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SNT49]
gi|344332186|gb|AEN17216.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SNT49]
Length = 341
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRHERADLFTPQLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420470266|ref|ZP_14968976.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-11]
gi|393086391|gb|EJB87068.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-11]
Length = 341
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 26695]
gi|410023600|ref|YP_006892853.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Rif1]
gi|410501367|ref|YP_006935894.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Rif2]
gi|410681886|ref|YP_006934288.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 26695]
gi|419417065|ref|ZP_13957557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori P79]
gi|420430195|ref|ZP_14929225.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-20]
gi|420465855|ref|ZP_14964619.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-6]
gi|421709901|ref|ZP_16149259.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R018c]
gi|421723214|ref|ZP_16162470.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R056a]
gi|2500210|sp|P55983.1|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB)
[Helicobacter pylori 26695]
gi|384373966|gb|EIE29408.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori P79]
gi|393048814|gb|EJB49781.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-20]
gi|393080185|gb|EJB80913.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-6]
gi|407210802|gb|EKE80676.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R018c]
gi|407225184|gb|EKE94956.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R056a]
gi|409893527|gb|AFV41585.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 26695]
gi|409895257|gb|AFV43179.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Rif1]
gi|409896918|gb|AFV44772.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Rif2]
Length = 341
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420452950|ref|ZP_14951789.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-8]
gi|393070558|gb|EJB71347.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-8]
Length = 341
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420416730|ref|ZP_14915838.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NQ4044]
gi|393035921|gb|EJB36963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NQ4044]
Length = 341
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|408907499|emb|CCM11414.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Helicobacter heilmannii ASB1.4]
Length = 342
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 179/331 (54%), Gaps = 20/331 (6%)
Query: 25 KQIINGHT----DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEE 80
+QI G+ D+NQ+ KY WA + + N W P+E+ M D + + L+ +
Sbjct: 21 RQIFGGNPTSMFDLNQI---KYPWASKLWKTMLTNTWFPEEVGMHGDKNHY---LKLSPQ 74
Query: 81 ERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVES 140
E+ R L DSL NN++ IT+PE L+RQAFEEA+H+H+Y +VES
Sbjct: 75 EKVGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAFEEALHSHSYAVMVES 134
Query: 141 LGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIME 200
+ + EI+ + +++DK+ D + + ++ LLK+L I+E
Sbjct: 135 ISANSDEIYEMWRTDSALKDKN-------DCIAQIYMDLSQEPTERNLLKALFA-NQILE 186
Query: 201 GLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEF 260
G++FY GF AL R +M+G++++ ++I RDE H N ++IN+++ E +L+T +
Sbjct: 187 GIYFYSGFSFFYALARSGRMLGTAQMIRFIQRDEVTHLNLFQNMINSLRKERADLFTPDL 246
Query: 261 CKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER 320
+E+ ++F +A++LE + + IL L+ K ++Y ++A+ R+ +G+ +++ + +
Sbjct: 247 LEEVLEMFKQAVDLESAWGAYITQEQILDLSPKILRAYTEYLADTRLSVVGLSKLY-HTK 305
Query: 321 NPFPWMSEMIHIKKE-SNFFETRVMEYQSGG 350
NP W+ + + SNFFE RV Y G
Sbjct: 306 NPIRWVEQFANFNSHRSNFFEARVSNYSKGS 336
>gi|420397321|ref|ZP_14896538.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori CPY1313]
gi|393011740|gb|EJB12925.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori CPY1313]
Length = 341
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T++ E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTSQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|386756086|ref|YP_006229303.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori PeCan18]
gi|384562344|gb|AFI02810.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori PeCan18]
Length = 341
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
cervicalis ATCC 49957]
gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
cervicalis ATCC 49957]
Length = 343
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 171/321 (53%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +++ HW+P+E+ M D++ W+ LTE ER L+ + FF+ AD +
Sbjct: 21 PFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQK--NLTESERNLLTQIFRFFTQAD-V 77
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E E + A+ + K
Sbjct: 78 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YQAFLKYK 135
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + +N ++ K+L F EGL + F ++ R
Sbjct: 136 EMKDKYDYMQSF------------SVENKTEIAKTLAAFGAFTEGLQLFASFAILMNFPR 183
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++HC I L T ENP +WT + ++ ++ +E E
Sbjct: 184 FNKMKGMGQIVSWSVRDETLHCLSVIRLFRTFIQENPEIWTEQLKADLVEICTTIVEHED 243
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G+ G+ + K Y+RFIA+ R++Q+G++ + E+NP PW+ E+++ +
Sbjct: 244 AFIDLAFELGGVQGMEPEDVKQYIRFIADRRLQQLGLEPHYGTEKNPLPWLDEILNAVEH 303
Query: 336 SNFFETRVMEYQSGGTLD-WE 355
NFFE R EY T WE
Sbjct: 304 MNFFEGRATEYSKASTAGTWE 324
>gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori P12]
gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
pylori P12]
Length = 341
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420444107|ref|ZP_14943031.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-41]
gi|393058986|gb|EJB59869.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-41]
Length = 341
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQIIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|385228767|ref|YP_005788700.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Puno120]
gi|344335205|gb|AEN15649.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Puno120]
Length = 341
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|421719344|ref|ZP_16158630.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R046Wa]
gi|407222515|gb|EKE92314.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R046Wa]
Length = 341
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|365857040|ref|ZP_09397041.1| ribonucleoside-diphosphate reductase, beta subunit
[Acetobacteraceae bacterium AT-5844]
gi|363716917|gb|EHM00308.1| ribonucleoside-diphosphate reductase, beta subunit
[Acetobacteraceae bacterium AT-5844]
Length = 344
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 170/316 (53%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +++ HW+P+E+ M D++ W+ LTE ER LV + FF+ +D +
Sbjct: 22 PFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQK--NLTEVERNLVTQIFRFFTQSD-V 78
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E + A+ + K
Sbjct: 79 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETVHIAAYAHLLDTIGMPEVE-YTAFLKYK 136
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F T ++K++ + K+L F EGL + F +L R
Sbjct: 137 EMKDKYDYMQSF----------TMDSKHE--IAKTLAAFGAFTEGLQLFASFAILLNFPR 184
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++HC I L T ENP +WT + ++ ++ + E
Sbjct: 185 FNKMKGMGQIVTWSVRDETLHCLSVIRLFRTFVQENPEIWTQQLRDDLREICETIVHHED 244
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL K Y+RFIA+ R++Q+G+ ++ E+NP PW+ E+++ +
Sbjct: 245 AFIDLAFEMGDVQGLTAAEVKQYIRFIADRRLQQLGLDTVYNIEKNPLPWLDEILNAVEH 304
Query: 336 SNFFETRVMEYQSGGT 351
NFFE R EY T
Sbjct: 305 MNFFEGRATEYSKAST 320
>gi|421714644|ref|ZP_16153964.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R036d]
gi|407217319|gb|EKE87153.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R036d]
Length = 341
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGITKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|419417786|ref|ZP_13958182.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NCTC 11637 = CCUG 17874]
gi|384375434|gb|EIE30724.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NCTC 11637 = CCUG 17874]
Length = 341
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 187/348 (53%), Gaps = 18/348 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
+ +LK ++FA I+EG++FY GF L R KM+GS+++ ++I RDE H ++
Sbjct: 172 ENILK--VLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNM 229
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 230 INALRNERADLFTPKLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLAD 289
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 290 SRLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|384896363|ref|YP_005770352.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 35A]
gi|420405360|ref|ZP_14904539.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6271]
gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori 35A]
gi|393022802|gb|EJB23918.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6271]
Length = 341
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 187/348 (53%), Gaps = 18/348 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
+ +LK ++FA I+EG++FY GF L R KM+GS+++ ++I RDE H ++
Sbjct: 172 ENILK--VLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNM 229
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 230 INALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLAD 289
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 290 SRLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter hansenii ATCC 23769]
gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter hansenii ATCC 23769]
Length = 334
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 165/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE ER LV + FF+ +D +
Sbjct: 27 PFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWHR--SLTESERHLVTQIFRFFTQSD-V 83
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E E ++A+ + K
Sbjct: 84 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPESE-YSAFLKYK 141
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + N ++ ++L F EGL + F +L R
Sbjct: 142 EMKDKYDYMQEF------------SVSNKYEIARTLAAFGAFTEGLQLFASFAILLNFPR 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC L ENP +WT + +I Q+ +E E
Sbjct: 190 FNKLKGMGQIVSWSVRDETLHCVSMARLFRVFVQENPEIWTQKLQDDIRQICRDIVEHED 249
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + + G + GL+ K Y+RF+AN R+ Q+G+ ++ NP PW+ EM++ +
Sbjct: 250 AFIDLSFEMGPVEGLDAAQVKRYIRFVANRRLGQLGLDGLYDVATNPLPWVDEMVNAVEH 309
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 310 ANFFENRSTEYSRAAT 325
>gi|407769954|ref|ZP_11117327.1| ribonucleotide-diphosphate reductase subunit beta [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407287098|gb|EKF12581.1| ribonucleotide-diphosphate reductase subunit beta [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 342
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 179/339 (52%), Gaps = 19/339 (5%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ ++I+ T+ PF+Y WA++ +L+ HW+P+E+ + D++ W + I ++ ER
Sbjct: 3 DDKVIDLLTENPVYKPFRYPWAYEAWLTQQQIHWLPEEVPLADDVKDWNHTI--SDAERN 60
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESL 141
L+ + FF+ +D + NN + Y + P Q +L AF E IH AY ++++++
Sbjct: 61 LLTQIFRFFTQSD-IEVNNCYMRHYTRVFKPTEVQMML-AAFSNMETIHVAAYSHLLDTI 118
Query: 142 GLDELEIFNAYHEIKSIRDKDEFL--------IPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
G+ E E + A+ + K ++DK +++ + D DL+ T +N + K+L
Sbjct: 119 GMPEAE-YEAFFQYKEMKDKYDYMQIWGIGPEDEYTDEHGDLRLTTQGKRN---IAKTLA 174
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
VF EGL + F ++ R NKM G ++ + +RDES+HC I L T ENP
Sbjct: 175 VFGAFTEGLQLFASFAMLMNFPRFNKMKGMGQIVTWSVRDESLHCESIIRLFRTFCKENP 234
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGI 312
+W E ++ + + E + + + G + GL + K Y+R+IA+ R+ Q+G+
Sbjct: 235 EIWDDEMRSDLIEACKTIVSHEDAFIDLSFEAGAVQGLTAEDIKKYIRYIADRRLSQLGL 294
Query: 313 KQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGT 351
++ + E+NP PWM M++ + +NFFE R EY T
Sbjct: 295 EEQYGIEQNPLPWMDAMLNAVEHTNFFENRATEYSKAAT 333
>gi|444917549|ref|ZP_21237644.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Cystobacter fuscus DSM 2262]
gi|444710890|gb|ELW51851.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Cystobacter fuscus DSM 2262]
Length = 353
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 174/316 (55%), Gaps = 8/316 (2%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +Y ++ Y ++ N W +E++ D+ ++ ++ +R L++R + FF+T D
Sbjct: 32 LRPMQYPAFFEMYRNAIKNTWTVEEVDFSTDVGDLRSK--MSAADRHLIQRLVAFFATGD 89
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
S+ +NN+VL Y+H+ APE R YL RQ +EEA+H Y ++++ D E F A
Sbjct: 90 SIVSNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPAERAKAFAAID 149
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I SI++K F ++D + L + + + L +LI FA +EGLFF+ F +
Sbjct: 150 NIPSIQEKAAFCFKWMDSVHQLD-RLETREQRRAFLLNLICFAACIEGLFFFAAFAYVYF 208
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L + + G + ++ RDES H F +++ ++ E P L+ + +++ + +A+
Sbjct: 209 LRSRGLLHGLAGGTNWVFRDESAHMAFAFEVVKCVRREEPGLFDAQMERDVVTMMEEAVA 268
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E +AED + G+ GL+V + YL ++A+ R+ + + + + +NPF +M ++ ++
Sbjct: 269 CELRFAEDLLGGGVAGLSVNEMRQYLEYVADQRLGMLELPKRYG-AKNPFGFM-DLQDVQ 326
Query: 334 KESNFFETRVMEYQSG 349
+ +NFFE RV YQ G
Sbjct: 327 ELANFFERRVSAYQVG 342
>gi|385230380|ref|YP_005790296.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Puno135]
gi|344336818|gb|AEN18779.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Puno135]
Length = 341
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|385249547|ref|YP_005777766.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F57]
gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F57]
Length = 341
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + +++K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKNKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|425791295|ref|YP_007019212.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Aklavik86]
gi|425629610|gb|AFX90150.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Aklavik86]
Length = 341
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|386747530|ref|YP_006220738.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cetorum MIT 99-5656]
gi|384553772|gb|AFI05528.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cetorum MIT 99-5656]
Length = 341
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA D + AN W +E++M
Sbjct: 4 SRKKIYNPNSTENVNE--RKIFGGNPTSMFDLNKIKYQWADDLWKMMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + ++ + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRTDMQLKSKN-------DYIAEVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ ++K++ I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENIVKAMFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERKDLFTPKLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIPKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420450049|ref|ZP_14948914.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-45]
gi|393068245|gb|EJB69048.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-45]
Length = 341
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|385220890|ref|YP_005782362.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori India7]
gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori India7]
Length = 341
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSVEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi470]
gi|384894619|ref|YP_005768668.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Sat464]
gi|386751435|ref|YP_006224655.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi417]
gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi470]
gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Sat464]
gi|384557693|gb|AFH98161.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi417]
Length = 341
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ESILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|387908342|ref|YP_006338676.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori XZ274]
gi|387573277|gb|AFJ81985.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori XZ274]
Length = 341
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|384889700|ref|YP_005764002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori v225d]
gi|384893068|ref|YP_005767161.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Cuz20]
gi|385216294|ref|YP_005776251.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F32]
gi|385225744|ref|YP_005785669.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 83]
gi|386753017|ref|YP_006226236.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi169]
gi|386754547|ref|YP_006227765.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi112]
gi|420395057|ref|ZP_14894287.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY1124]
gi|420399998|ref|ZP_14899201.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY3281]
gi|420401413|ref|ZP_14900608.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6081]
gi|420403891|ref|ZP_14903076.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6261]
gi|420407185|ref|ZP_14906354.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6311]
gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori v225d]
gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Cuz20]
gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F32]
gi|332673890|gb|AEE70707.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori 83]
gi|384559275|gb|AFH99742.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi169]
gi|384560805|gb|AFI01272.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi112]
gi|393015329|gb|EJB16496.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY1124]
gi|393018619|gb|EJB19766.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY3281]
gi|393018763|gb|EJB19909.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6261]
gi|393019524|gb|EJB20666.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6081]
gi|393022519|gb|EJB23640.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori CPY6311]
Length = 341
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|349686670|ref|ZP_08897812.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter oboediens 174Bp2]
Length = 337
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 163/316 (51%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LT+ ER LV + FF+ +D +
Sbjct: 29 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTDGERHLVTQIFRFFTQSD-V 85
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E E ++A+ + K
Sbjct: 86 EVNNCYMKHYSQVFRP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 143
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + ++ ++L F EGL + F +L R
Sbjct: 144 EMKDKYDYMQQF------------TVSDTYQIARTLAAFGAFTEGLQLFASFAILLNFPR 191
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDES+HC+ L ENP +WT +I Q+ +E E
Sbjct: 192 HNKLKGMGQIVSWSVRDESLHCDSMARLFRVFIQENPEIWTDTLRDDIRQICRDIVEHED 251
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL+ + Y+RF+AN R+ Q+G+ ++ NP PW+ EM++ +
Sbjct: 252 AFIDLAFEMGAVEGLDAAQVRQYIRFVANRRLGQLGLDGLYDIAANPLPWVDEMVNAVEH 311
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 312 TNFFENRATEYSRAAT 327
>gi|420448755|ref|ZP_14947634.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-44]
gi|393064814|gb|EJB65645.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-44]
Length = 341
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|385222506|ref|YP_005771639.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SouthAfrica7]
gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SouthAfrica7]
Length = 341
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 KNILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|384898664|ref|YP_005774043.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F30]
gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F30]
Length = 341
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
gi|385217792|ref|YP_005779268.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F16]
gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F16]
Length = 341
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIESLWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|421718066|ref|ZP_16157366.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R038b]
gi|407222322|gb|EKE92123.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R038b]
Length = 341
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERSDLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420455612|ref|ZP_14954439.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-14]
gi|421713656|ref|ZP_16152986.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R32b]
gi|393071566|gb|EJB72349.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-14]
gi|407214788|gb|EKE84630.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R32b]
Length = 341
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLIDEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp.
NBC37-1]
gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
NBC37-1]
Length = 339
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 189/348 (54%), Gaps = 17/348 (4%)
Query: 8 KKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+KK S ER + +++I G T + +L KY WA++ + N W P+E++M R
Sbjct: 3 RKKIYNPESEERTS--DRKIFGGDPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTR 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D+ +K LT+ E++ + L DSL NNI+ ITAPE L+RQAFE
Sbjct: 61 DVNDYKR---LTDAEKQAYDKVLAQLIFMDSLQTNNIIDNLNPFITAPEVNLILVRQAFE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+ +Y +V+S+ + EI+ + ++ K++ + + L++ D+
Sbjct: 118 EALHSQSYAVMVDSISTNSEEIYELWRRDMKLKSKNDAIAKVYEELSE-------NPTDE 170
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
++K++ I+EG++FY GF + L R +KM+G++++ ++I RDE H ++IN
Sbjct: 171 NIVKAMFA-NQILEGIYFYSGFTYLYTLARSDKMLGTAQMIRFIQRDEVTHLLLFQNMIN 229
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
K E P L+T E ++ Q+F A++LE + ILGL + + Y++++A+ R
Sbjct: 230 ATKRERPELFTKELIDDVYQMFRDAVKLECEWGTYITQGQILGLTNEIIEQYIQYLADKR 289
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGGTLD 353
+ +G+++I+ E +P W+ +++NFFE V Y S G+LD
Sbjct: 290 LHAVGLEKIYNVE-HPIKWVDNFSQFNDQKTNFFEGNVTNY-SKGSLD 335
>gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori HPKX_438_AG0C1]
gi|420437634|ref|ZP_14936616.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-28]
gi|393052225|gb|EJB53174.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp H-28]
Length = 341
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420414021|ref|ZP_14913142.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4099]
gi|420418023|ref|ZP_14917116.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4076]
gi|393026972|gb|EJB28065.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4099]
gi|393034221|gb|EJB35280.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4076]
Length = 341
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
bilis ATCC 43879]
gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
bilis ATCC 43879]
Length = 351
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 185/345 (53%), Gaps = 16/345 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + +L KY WA++ + AN W P+E+NM
Sbjct: 13 SRKKIYNPHSTESVNE--RRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVNMN 70
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
+D ++ + LT +E++ R L DSL NN+ +IT PE L+RQAF
Sbjct: 71 QDK---RDYMELTLQEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQAF 127
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EE++H +Y +V+S+ + EI+ + + +R K++++ DV TDL +
Sbjct: 128 EESLHAQSYAVMVDSISANTDEIYQMWRKDDKLRSKNDYIA---DVYTDL----AKNPTE 180
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
L+K++ I+EG++FY GF L R KM S+E+ ++I RDE H +I
Sbjct: 181 TNLIKAMFA-NQILEGIYFYSGFAFFYTLARSGKMQNSAEMIRFIQRDEITHLTIFQQMI 239
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
+ + E P+L+T E+ ++F +A++LE + E ILGL K + Y+ ++A+
Sbjct: 240 ISTRKERPDLFTQALQDEVMEMFRQAVDLESSWGEYITQGQILGLTAKIIRQYIEYLADK 299
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSG 349
R+K + ++ + NP W+ E ++ + +NFFE +V Y G
Sbjct: 300 RLKAVDYPILYNTQ-NPIQWVDEQVNFNNQRTNFFEAKVRNYTRG 343
>gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori B38]
gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Helicobacter pylori B38]
Length = 341
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|307719930|ref|YP_003891070.1| ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
16294]
gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
16294]
Length = 340
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 188/347 (54%), Gaps = 18/347 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ +S E +N ++++ G+ T + +L KY WA++ + N W P+E++M
Sbjct: 2 NRKQIYNPDSTENVN--DRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
RD+ +K LT+ E+ + L DSL NN++ ++TAPE L+RQ+F
Sbjct: 60 RDVNDYKQ---LTDAEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSF 116
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+ +Y +V+S+ + EI++ + ++ K+ D + + + D
Sbjct: 117 EEALHSQSYAVMVDSISTNSEEIYDLWRRDMMLKHKN-------DTIAAVYQELAKNPTD 169
Query: 186 QKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
+K+ FA I+EG++FY GF I L R KM+GS+++ ++I RDE H +L
Sbjct: 170 SNFVKA--CFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNL 227
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
INT++ E P+L+T E ++ ++F +A++LE + + ILGL + + Y++++A+
Sbjct: 228 INTLRKERPDLFTDELRADVIEMFKEAVKLETEWGKYITQGQILGLTDEIVEQYIQYLAD 287
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ +G +++ NP W+ + +++NFFE V Y G
Sbjct: 288 DRLNSVGFDKLYNVS-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS 333
>gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SJM180]
gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SJM180]
Length = 341
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEVSWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420460565|ref|ZP_14959363.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-27]
gi|393076522|gb|EJB77274.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-27]
Length = 341
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL ANN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|384887992|ref|YP_005762503.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 52]
gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 52]
Length = 341
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 186/348 (53%), Gaps = 18/348 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
+ +LK ++FA I+EG++FY GF L R KM+GS+++ ++I RDE H ++
Sbjct: 172 ENILK--VLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNM 229
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 230 INALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLAD 289
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 290 SRLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420408474|ref|ZP_14907632.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4216]
gi|420467041|ref|ZP_14965797.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-9]
gi|393025234|gb|EJB26342.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4216]
gi|393084201|gb|EJB84895.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-9]
Length = 341
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|386746506|ref|YP_006219723.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori HUP-B14]
gi|420409876|ref|ZP_14909021.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NQ4200]
gi|384552755|gb|AFI07703.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori HUP-B14]
gi|393029009|gb|EJB30091.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NQ4200]
Length = 341
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|387782663|ref|YP_005793376.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
pylori 51]
gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
pylori 51]
Length = 341
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 186/348 (53%), Gaps = 18/348 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
+ +LK ++FA I+EG++FY GF L R KM+GS+++ ++I RDE H ++
Sbjct: 172 ENILK--VLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNM 229
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 230 INALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLAD 289
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 290 SRLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420500638|ref|ZP_14999183.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-30]
gi|421721968|ref|ZP_16161239.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R055a]
gi|393151020|gb|EJC51324.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-30]
gi|407223742|gb|EKE93526.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R055a]
Length = 341
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori B8]
gi|420415578|ref|ZP_14914691.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4053]
gi|420422729|ref|ZP_14921806.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4110]
gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori B8]
gi|393031483|gb|EJB32554.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4053]
gi|393036663|gb|EJB37702.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4110]
Length = 341
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|384897757|ref|YP_005773185.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Lithuania75]
gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Lithuania75]
Length = 341
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 185/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ ++F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|421717159|ref|ZP_16156466.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R037c]
gi|407219004|gb|EKE88822.1| ribonucleotide reductase, small chain family protein [Helicobacter
pylori R037c]
Length = 341
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLISEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420426542|ref|ZP_14925595.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori Hp A-9]
gi|393043970|gb|EJB44967.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori Hp A-9]
Length = 341
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPNSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEITHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420458805|ref|ZP_14957614.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-26]
gi|393074148|gb|EJB74909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp A-26]
Length = 341
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori PeCan4]
gi|420411846|ref|ZP_14910976.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NQ4228]
gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori PeCan4]
gi|393028806|gb|EJB29891.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori NQ4228]
Length = 341
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella
succinogenes DSM 1740]
Length = 341
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 183/345 (53%), Gaps = 15/345 (4%)
Query: 8 KKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+KK S E +N+ ++I G+ T + +L KY WA++ + AN W P+E+NM
Sbjct: 4 RKKIYNPQSTETVNE--RKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTP 61
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D + GLT E+ R L DSL NN++ +IT+PE L+RQAFE
Sbjct: 62 DKRDYNG--GLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFE 119
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+ +Y +VES+ + EI+ + ++ K++ + + L D
Sbjct: 120 EALHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEEL-------AKNPTDS 172
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
+LK++ I+EG++FY GF L R KM+GS+++ ++I RDE H ++IN
Sbjct: 173 AMLKAMFA-NQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMIN 231
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
+K E P+L+T +E+ ++F KA+ +E + + ILGL + Y++++A+ R
Sbjct: 232 ALKKERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDR 291
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
+K++G+ ++ ++P W+ + ++++NFFE V Y G
Sbjct: 292 LKRVGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 335
>gi|384170895|ref|YP_005552272.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter sp.
L]
gi|345470505|dbj|BAK71955.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter sp.
L]
Length = 339
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 194/351 (55%), Gaps = 19/351 (5%)
Query: 8 KKKTLKINSFERINKINKQIINGHTD-VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K +S E +N ++++ G++D + KY WA + + + AN W P+E+ M
Sbjct: 3 RKTNYNPDSKESLN--DRRVFGGNSDGMINFTKMKYQWALNLWDTMEANTWFPREVQMTG 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D + +K LT E+R+ L DSL NN++ +ITAPE L RQ++E
Sbjct: 61 DAKDYK---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA H+ +Y +VES+ + I++ + +R+K++++ DV +L + D+
Sbjct: 118 EANHSKSYAVMVESISDNTDLIYDMWKNDAKLREKNKYIA---DVYKNLSGEI----TDE 170
Query: 187 KLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
K++ L +FA I+EGL+FY GF I ALG+ KM+GSS++ ++I RDE H ++I
Sbjct: 171 KIV--LALFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMI 228
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T E + + +F KA+ELE + ILG K Y++++A+
Sbjct: 229 NSVRKERPDLFTQELEETVRAMFRKAVELEASWGAYITQGQILGFTDGIIKQYIQYLADR 288
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLDWE 355
R++ +G K + ++P PW+ + +NFFE V+ Y S G++D++
Sbjct: 289 RLEAVGYKPEYNV-KHPIPWVDGYASFNDQRTNFFEGNVVNY-SKGSIDFD 337
>gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
Length = 339
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 187/349 (53%), Gaps = 24/349 (6%)
Query: 8 KKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K+ S E +N ++QI G+ T + +L KY WA++ + N W P+E++M R
Sbjct: 3 RKQIYNPTSTEHVN--DRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTR 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D +K LTE E+ + L DSL NN++ ++TAPE L+RQ+FE
Sbjct: 61 DAVDYKY---LTEMEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+ +Y +V+S+ + EI++ + + ++ K++ + D L ND
Sbjct: 118 EALHSQSYAVMVDSISQNSEEIYDLWRKDMMLKTKNDSIAARYDELA----------NDP 167
Query: 187 KLLKSLIVFAC----IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGI 242
+S V AC I+EG++FY GF I L R KM+GS+++ ++I RDE H
Sbjct: 168 S--ESAFVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQ 225
Query: 243 DLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFI 302
++INT++ E +L+T E +E+ +F KA+ELE + + ILGL + + Y++++
Sbjct: 226 NIINTLRRERSDLFTEELIEEVYDMFRKAVELETAWGKYITQGQILGLTNEIVEQYIQYL 285
Query: 303 ANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
A+ R+ +G+K ++ +P W+ + +++NFFE V Y G
Sbjct: 286 ADQRLTAVGLKPLYNVS-HPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS 333
>gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
acinonychis str. Sheeba]
gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
acinonychis str. Sheeba]
Length = 341
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 184/346 (53%), Gaps = 16/346 (4%)
Query: 8 KKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 5 RKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMND 62
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+E
Sbjct: 63 DK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYE 119
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+HAY +VES+ + EI++ + ++ K+ D + + + ++
Sbjct: 120 EALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTEE 172
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
+LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++IN
Sbjct: 173 NILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMIN 231
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
++ E +L+T + E+ ++F KA+++E + + ILGL + Y++F+A+ R
Sbjct: 232 ALRNERADLFTPQLIDEVIEMFKKAVKIEASWGDYITQGKILGLTSSLIEQYIQFLADSR 291
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
+ ++GI +I+ + +P W+ ++ SNFFE RV Y G
Sbjct: 292 LSKVGIAKIYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|190570498|ref|YP_001974856.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 329
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 169/315 (53%), Gaps = 15/315 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+ E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSNVEKNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y +I P E L + E IH AY Y+++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K E++ L+F+ ++ + + K+L VF EGL + F +L R
Sbjct: 128 MRKKYEYM---------LEFEESKKQDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
KM G ++ + RDE++H N I+L NT EN +W EF +E+ +ELE
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELEDE 238
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ G + GL+ + ++Y+R+IAN R+ Q+G+K I+ + NP PW+ E+++ + +
Sbjct: 239 FISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEHT 298
Query: 337 NFFETRVMEYQSGGT 351
NFFE RV EY T
Sbjct: 299 NFFENRVTEYSRAAT 313
>gi|420493832|ref|ZP_14992402.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-16]
gi|393111231|gb|EJC11754.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Hp P-16]
Length = 341
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|420419586|ref|ZP_14918674.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4161]
gi|420435137|ref|ZP_14934137.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-27]
gi|420495333|ref|ZP_14993898.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-23]
gi|420505888|ref|ZP_15004403.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-74]
gi|393038952|gb|EJB39984.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori NQ4161]
gi|393052905|gb|EJB53851.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp H-27]
gi|393113466|gb|EJC13985.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-23]
gi|393115393|gb|EJC15903.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori Hp P-74]
Length = 341
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori HPAG1]
gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
pylori HPAG1]
Length = 341
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 186/348 (53%), Gaps = 18/348 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244
+ +LK ++FA I+EG++FY GF L R KM+GS+++ ++I RDE H ++
Sbjct: 172 ENILK--VLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNM 229
Query: 245 INTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIAN 304
IN ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 230 INALRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLAD 289
Query: 305 CRMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 290 SRLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|444375497|ref|ZP_21174785.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori A45]
gi|443619972|gb|ELT80430.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori A45]
Length = 341
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERADLFTPKLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|353327815|ref|ZP_08970142.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont wVitB of Nasonia vitripennis]
gi|373450437|ref|ZP_09542433.1| putative ribonucleoside-diphosphate reductase small subunit 376L
[Wolbachia pipientis wAlbB]
gi|371932358|emb|CCE77442.1| putative ribonucleoside-diphosphate reductase small subunit 376L
[Wolbachia pipientis wAlbB]
Length = 329
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 168/315 (53%), Gaps = 15/315 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+ E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSNVEKNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y +I P E L + E IH AY Y+++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K E++ L+F+ + + + K+L VF EGL + F +L R
Sbjct: 128 MRKKYEYM---------LEFEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
KM G ++ + RDE++H N I+L NT EN +W EF +E+ +ELE
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELEDE 238
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ G + GL+ + ++Y+R+IAN R+ Q+G+K I+ + NP PW+ E+++ + +
Sbjct: 239 FISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEHT 298
Query: 337 NFFETRVMEYQSGGT 351
NFFE RV EY T
Sbjct: 299 NFFENRVTEYSRAAT 313
>gi|420398620|ref|ZP_14897832.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori CPY1962]
gi|393013609|gb|EJB14784.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori CPY1962]
Length = 341
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N+ ++I G+ T + L KY WA + + AN W +E++M
Sbjct: 4 SRKKIYNPDSTESVNE--RKIFGGNPTSMFDLNKIKYQWADYLWKTMLANTWFAEEVSMN 61
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D ++ + L+ EE+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 62 DDK---RDYLKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAY 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+HAY +VES+ + EI++ + ++ K+ D + + + +
Sbjct: 119 EEALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKN-------DYIAQVYMELAKNPTE 171
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+ +LK+L I+EG++FY GF L R KM+GS+++ ++I RDE H ++I
Sbjct: 172 ENILKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMI 230
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N ++ E +L+T + E+ +F KA+E+E + + ILGL + Y++F+A+
Sbjct: 231 NALRNERTDLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADS 290
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGT 351
R+ ++GI +++ + +P W+ ++ SNFFE RV Y G
Sbjct: 291 RLSKVGIAKVYGVQ-HPIKWVESFSSFNEQRSNFFEARVSNYAKGSV 336
>gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
aurantiaca DW4/3-1]
gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
aurantiaca DW4/3-1]
Length = 288
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 155/274 (56%), Gaps = 6/274 (2%)
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
+T+ ER L+ R + FF+T DS+ NN+VL Y+H+ APE R YL RQ +EEA+H Y
Sbjct: 1 MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLT 60
Query: 137 IVESL---GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
++++ D + F A I SI+ K F + ++D + DL + ++ ++ L +LI
Sbjct: 61 LLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLI 119
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
FA +EGLFF+ F + L + + G + ++ RDES H F + I + E P
Sbjct: 120 CFAGCIEGLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEP 179
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+L+ ++ + +A+E E +A+D + G+ GL+V+ + YL ++A+ R+ +G+
Sbjct: 180 DLFDARMQADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLA 239
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQ 347
+F +N P+M ++ +++ +NFFE RV YQ
Sbjct: 240 PVFRV-KNSLPFM-DLQDVQELTNFFERRVSAYQ 271
>gi|339021624|ref|ZP_08645632.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
tropicalis NBRC 101654]
gi|338751345|dbj|GAA08936.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
tropicalis NBRC 101654]
Length = 338
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 167/321 (52%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W L E ER LV + FF+ +D +
Sbjct: 26 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWHR--VLNESERHLVTQIFRFFTQSD-V 82
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY Y++++LG+ E E ++A+ + K
Sbjct: 83 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPEAE-YSAFLKYK 140
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + ++ K+L F EGL + F +L R
Sbjct: 141 EMKDKYDYMQAF------------SVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 188
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L ENP +WT E +E+ + +E E
Sbjct: 189 FNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFVHENPEIWTDELQQELRDICATIVEHEE 248
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL+ K+Y+ FIA+ R+ Q+G++ ++ NP PW+ +M++ +
Sbjct: 249 AFIDLAFEMGPVEGLDAAQVKTYIHFIADRRLIQLGLEPLYNTTANPLPWLDDMLNAVEH 308
Query: 336 SNFFETRVMEYQSGGTLD-WE 355
+NFFE R EY T WE
Sbjct: 309 TNFFENRATEYSRASTTGTWE 329
>gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
7299]
gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
7299]
Length = 339
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 181/335 (54%), Gaps = 17/335 (5%)
Query: 24 NKQIINGHTD-VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++I G+ D + KY WA + + + AN W P+E+ M D + +K LT E+
Sbjct: 17 DRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREVQMTGDAKDYKY---LTPAEK 73
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
R+ L DSL NN++ +IT PE L RQ++EEA H+ +Y +VES+
Sbjct: 74 RMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSRQSYEEANHSKSYAVMVESIS 133
Query: 143 LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC-IMEG 201
+ EI++ + +R+K+ ++ D L+D D+K++ L +FA I+EG
Sbjct: 134 DNTDEIYDMWKNDTQLREKNNYIAAVYDNLSD-------NITDEKMV--LAMFANQILEG 184
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
L+FY GF I ALG+ KM+GSS++ ++I RDE H ++IN+ + E P+L+T E
Sbjct: 185 LYFYAGFAAIYALGKSGKMLGSSQMIKFIQRDEVTHLLLFQNMINSTRKERPDLFTPELE 244
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERN 321
++ +F KA+ELE + ILG Y++++A+ R+ +G K + ++
Sbjct: 245 VKVRAMFRKAVELEAAWGAYITQGQILGFTDGIITQYIQYLADKRLDAVGYKPEYNV-KH 303
Query: 322 PFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLDWE 355
P PW+ + +NFFE V+ Y S G++D++
Sbjct: 304 PIPWVDGYSSFNDQRTNFFEGNVVNY-SKGSIDFD 337
>gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurimonas
gotlandica GD1]
gi|373867478|ref|ZP_09603876.1| ribonucleoside-diphosphate reductase, subunit beta [Sulfurimonas
gotlandica GD1]
gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurimonas
gotlandica GD1]
gi|372469579|gb|EHP29783.1| ribonucleoside-diphosphate reductase, subunit beta [Sulfurimonas
gotlandica GD1]
Length = 340
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 186/346 (53%), Gaps = 18/346 (5%)
Query: 8 KKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K +S E +N ++++ G T + +L KY WA++ + N W P+E++M R
Sbjct: 3 RKNIYNPDSKENVN--DRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTR 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D+ +KN LTE E+ + L DSL NN++ ++T+PE L+RQ+FE
Sbjct: 61 DVNDYKN---LTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+ +Y +V+S+ + EI++ + ++ K+ D + + + +
Sbjct: 118 EALHSQSYAVMVDSISTNSAEIYDLWRRDMMLKGKN-------DAIARVYQELAANPTEH 170
Query: 187 KLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+K+ FA I+EG++FY GF I L R KM+GS+++ ++I RDE H +LI
Sbjct: 171 NFVKA--CFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLI 228
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
NT++ E P+L+T + +E+ +F +A++LE + + ILGL + Y++F+A+
Sbjct: 229 NTLRKERPDLFTDKLKEEVIAMFKEAVQLESEWGKYITQGQILGLTNDIVEQYIKFLADE 288
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIK-KESNFFETRVMEYQSGG 350
R+ +G ++++ NP W+ + +++NFFE V Y G
Sbjct: 289 RLTAVGFEKLYNV-TNPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS 333
>gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-01]
gi|384042078|ref|YP_005480822.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-12]
gi|384050595|ref|YP_005477658.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-03]
gi|384053703|ref|YP_005486797.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-07]
gi|384056937|ref|YP_005489604.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-22]
gi|384059578|ref|YP_005498706.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-26]
gi|384062870|ref|YP_005483512.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-32]
gi|384118946|ref|YP_005501570.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 339
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 165/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W L E E+ LV + FF+ +D +
Sbjct: 27 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWHR--VLNEGEQHLVTQIFRFFTQSD-V 83
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY Y++++LG+ E E ++A+ + K
Sbjct: 84 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETE-YSAFLKYK 141
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ +T + ++ K+L F EGL + F +L R
Sbjct: 142 EMKDKYDYM------------QTFTVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L ENP LWT + E+ + +E E
Sbjct: 190 FNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEHEE 249
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GLN + K+Y+ FIA+ R+ Q+G++ I+ NP PW+ +M++ +
Sbjct: 250 AFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDMLNAVEH 309
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 310 TNFFENRATEYSRAST 325
>gi|421848751|ref|ZP_16281738.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus NBRC 101655]
gi|371460631|dbj|GAB26941.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus NBRC 101655]
Length = 339
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W L E E+ LV + FF+ +D +
Sbjct: 27 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWHR--VLNEGEQHLVTQIFRFFTQSD-V 83
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY Y++++LG+ E E ++A+ + K
Sbjct: 84 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETE-YSAFLKYK 141
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ +T + ++ K+L F EGL + F +L R
Sbjct: 142 EMKDKYDYM------------QTFTVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L ENP LWT + E+ + +E E
Sbjct: 190 FNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEHEE 249
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GLN K+Y+ FIA+ R+ Q+G++ I+ NP PW+ +M++ +
Sbjct: 250 AFIDLAFEMGAVEGLNADQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDMLNAVEH 309
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 310 TNFFENRATEYSRAST 325
>gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
pomorum DM001]
gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
pomorum DM001]
Length = 339
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 167/321 (52%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W L E E+ LV + FF+ +D +
Sbjct: 27 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWHR--VLNEGEQHLVTQIFRFFTQSD-V 83
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY Y++++LG+ E E ++A+ + K
Sbjct: 84 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETE-YSAFLKYK 141
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ +T + ++ K+L F EGL + F +L R
Sbjct: 142 EMKDKYDYM------------QTFTVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L ENP LWT + E+ + +E E
Sbjct: 190 FNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEHEE 249
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GLN + K+Y+ FIA+ R+ Q+G++ I+ NP PW+ +M++ +
Sbjct: 250 AFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDMLNAVEH 309
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 310 TNFFENRSTEYSRASTAGTWE 330
>gi|417872277|ref|ZP_12517185.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH1]
gi|417876219|ref|ZP_12521002.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH2]
gi|417876648|ref|ZP_12521405.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH3]
gi|417884106|ref|ZP_12528314.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH4]
gi|421793537|ref|ZP_16229662.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-2]
gi|445484256|ref|ZP_21456607.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-78]
gi|342223571|gb|EGT88661.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH1]
gi|342223766|gb|EGT88850.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH2]
gi|342234806|gb|EGT99442.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH4]
gi|342237265|gb|EGU01746.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH3]
gi|410396895|gb|EKP49155.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-2]
gi|444767880|gb|ELW92114.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-78]
Length = 330
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 185/343 (53%), Gaps = 26/343 (7%)
Query: 21 NKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
N+IN + I+ D+ + P K+ WA D + N+W P+ +++ + +++ LT
Sbjct: 5 NRINDRRLILGPKDDLMAISPMKHTWARDIHQRMKDNNWFPEVVDLSNEGICYRDK--LT 62
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
E ERRL ++L F S D + +NI +H+T+PE L RQA+EEA H +Y ++
Sbjct: 63 EAERRLYDKSLAFLSNLDGIQFHNINQNIAKHVTSPEVAICLSRQAWEEANHVESYAKLI 122
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
E++ D + ++ + + K+EF++ +L D G ACI
Sbjct: 123 ETVSADPMSVYMTFERDGILAKKNEFILRQSRILGDQFSARG------------FALACI 170
Query: 199 ----MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD-ESMHCNFGIDLINTIKMENP 253
+EG +F+ GF+ L + KM+GS+++ +YI RD E H + +++I T+++ENP
Sbjct: 171 SNVMLEGEYFFSGFLGFYLLAFKGKMLGSADMIRYIQRDEEGTHLDLFLNMIETLRIENP 230
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
++T+ F ++ ++ ++ ++E + + + +G+ N + + Y++++AN R QI
Sbjct: 231 EVFTSSFWEDAAKIIDESTKMEISWGQ-YIHQGV--TNPEAIELYIKYLANKRAAQIRAP 287
Query: 314 QI-FPYERNPFPWMSEMIHIK-KESNFFETRVMEYQSGGTLDW 354
+ +P NPFPW+ E E NFFETRV +Y++GG L W
Sbjct: 288 FVPYPGVVNPFPWVEEFSKPNTAEKNFFETRVTDYKTGGALAW 330
>gi|421852001|ref|ZP_16284692.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371479692|dbj|GAB29895.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 335
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W L E E+ LV + FF+ +D +
Sbjct: 23 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWHR--VLNEGEQHLVTQIFRFFTQSD-V 79
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY Y++++LG+ E E ++A+ + K
Sbjct: 80 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETE-YSAFLKYK 137
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ +T + ++ K+L F EGL + F +L R
Sbjct: 138 EMKDKYDYM------------QTFTVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNFPR 185
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC I L ENP LWT + E+ + +E E
Sbjct: 186 FNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEHEE 245
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GLN K+Y+ FIA+ R+ Q+G++ I+ NP PW+ +M++ +
Sbjct: 246 AFIDLAFEMGAVEGLNADQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDMLNAVEH 305
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 306 TNFFENRATEYSRAST 321
>gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate
division TM7 single-cell isolate TM7c]
Length = 277
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 148/264 (56%), Gaps = 3/264 (1%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+G D QL P +Y WA+ Y + AN W P E+ + +D+ +K LTE+E+ +K
Sbjct: 12 SGVRDGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKK---LTEDEKNALKTV 68
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEI 148
+ + + + L ++ G Y + A EC YL +Q +EEA H ++YI+E+ + EI
Sbjct: 69 ISYLNPNELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEI 128
Query: 149 FNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGF 208
+ A KS+ DK F ++ + + + T+ + +++L+ + ++EG++FY GF
Sbjct: 129 YAAGWGKKSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAYNIVLEGIWFYSGF 188
Query: 209 VQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLF 268
+ ++ R+N + L ++ RDE++H FGI+L+ TI ENP+L EF EI L
Sbjct: 189 MVGMSFRRRNLLRNVGTLLDWVTRDENLHLEFGINLLLTILHENPDLQDPEFADEIRNLI 248
Query: 269 LKAIELEYYYAEDTMPKGILGLNV 292
L+A+ELE Y D +P GILGLN
Sbjct: 249 LQAVELEEAYNRDMLPNGILGLNA 272
>gi|386285236|ref|ZP_10062452.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp.
AR]
gi|385343755|gb|EIF50475.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp.
AR]
Length = 339
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 178/331 (53%), Gaps = 15/331 (4%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++I G T + +L KY WA++ + N W P+E++M RD+ +KN LT+ E+
Sbjct: 18 RKIFGGDPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVNDYKN---LTDAEKS 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L DSL NNI+ IT+PE L+RQAFEEA+H+ +Y +V+S+
Sbjct: 75 AYDKVLAQLIFMDSLQTNNIMDNINPFITSPEVNLILVRQAFEEALHSQSYAVMVDSIST 134
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ EI+ + ++ K++ + + LT D ++K++ I+EG++
Sbjct: 135 NSKEIYELWRRDMMLKTKNDAIAKVYEELT-------ANPTDTNIVKAMFA-NQILEGIY 186
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF + L R +KM+G++++ ++I RDE H ++IN+ + E P L+T E E
Sbjct: 187 FYSGFAYLYTLARSDKMLGTAQMIRFIQRDEVTHLLLFQNMINSTRKERPELFTKELIDE 246
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
+ ++F A++LE + ILGL Y++++A+ R+ +G+++I+ E +P
Sbjct: 247 VYEMFRSAVKLECEWGAYITQGQILGLTDDIITQYIQYLADKRLHAVGLEKIYNVE-HPI 305
Query: 324 PWMSEMIHI-KKESNFFETRVMEYQSGGTLD 353
W+ +++NFFE V Y S G+LD
Sbjct: 306 KWVDNFSQFNDQKTNFFEGNVTNY-SKGSLD 335
>gi|406706029|ref|YP_006756382.1| ribonucleotide reductase small subunit [alpha proteobacterium
HIMB5]
gi|406651805|gb|AFS47205.1| Ribonucleotide reductase, small chain [alpha proteobacterium HIMB5]
Length = 335
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 167/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y W +D +L+ HW+P+E+ + D+ W+ L+ E+ L+ + FF+ AD +
Sbjct: 28 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSPSEKNLLTQIFRFFTQAD-V 84
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
+N + Y ++ P ++ AF E +H AY ++++++G+ E E ++A+ + K
Sbjct: 85 EVSNCYIRHYMNVFKP-TEVLMMMSAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKYK 142
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + K++ + K++ VF+ EGL + F +L R
Sbjct: 143 EMKDKYDYMQGF------------DVKSNHDIAKTIAVFSAFTEGLQLFASFAILLNFPR 190
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++HCN I L ENP WT + KEI + + E
Sbjct: 191 HNKMKGMGQIVTWSVRDETLHCNSMIRLFKDFIKENPETWTPQLKKEIYEACRTIVHHED 250
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL + K+Y+RFIAN R+ Q+G++ I+ E+NP W+ M++ +
Sbjct: 251 AFIDLAFQMGPMEGLTAQDVKNYIRFIANRRLHQLGLEAIYKVEKNPLGWLDTMLNAVEH 310
Query: 336 SNFFETRVMEYQSGGT 351
NFFE R EY T
Sbjct: 311 MNFFEGRATEYSKAST 326
>gi|410997196|gb|AFV98661.1| hypothetical protein B649_11750 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 339
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 184/349 (52%), Gaps = 24/349 (6%)
Query: 8 KKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K+ S E +N ++QI G+ T + +L KY WA++ + N W P+E++M R
Sbjct: 3 RKQIYNPTSTEHVN--DRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTR 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D +K LTE E+ + L DSL NN++ ++TAPE L+RQ+FE
Sbjct: 61 DAVDYK---YLTEMEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEVNLILVRQSFE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+ +Y +V+S+ + EI++ + ++ K++ + + + ND
Sbjct: 118 EALHSQSYAVMVDSISQNSEEIYDLWRRDMMLKTKND----------SIAARYNDLANDP 167
Query: 187 KLLKSLIVFAC----IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGI 242
+S V AC I+EG++FY GF I L R KM+GS+++ ++I RDE H
Sbjct: 168 S--ESAFVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQ 225
Query: 243 DLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFI 302
++INT++ E +L+T E +E+ +F KA+ LE + + ILGL + + Y++ +
Sbjct: 226 NIINTLRRERSDLFTEELLEEVYDMFRKAVALEVAWGQYITQGQILGLTNEIVEQYIQHL 285
Query: 303 ANCRMKQIGIKQIFPYERNPFPWMSEMIHIK-KESNFFETRVMEYQSGG 350
A+ R+ +G+K ++ NP W+ + +++NFFE V Y G
Sbjct: 286 ADNRLTAVGMKPLYNVA-NPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS 333
>gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter
butzleri RM4018]
gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter
butzleri RM4018]
Length = 339
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 196/351 (55%), Gaps = 19/351 (5%)
Query: 8 KKKTLKINSFERINKINKQIINGHTD-VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K +S E +N ++++ G++D + KY WA + + + AN W P+E+ M
Sbjct: 3 RKTNYNPDSKESLN--DRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTG 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D + +K LT E+R+ L DSL NN++ +ITAPE L RQ++E
Sbjct: 61 DAKDYK---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA H+ +Y +VES+ + I++ + +R+K+ ++ +V +L +G+ +D+
Sbjct: 118 EANHSKSYAVMVESISDNTDLIYDMWKNDAKLREKNTYIA---EVYKNL---SGDI-DDR 170
Query: 187 KLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
K++ L +FA I+EGL+FY GF I ALG+ KM+GSS++ ++I RDE H ++I
Sbjct: 171 KIV--LALFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMI 228
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T+E + + +F KA++LE + ILG + Y+ ++A+
Sbjct: 229 NSVRKERPDLFTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADR 288
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLDWE 355
R++ +G K + ++P PW+ + +NFFE V+ Y S G++D++
Sbjct: 289 RLEAVGYKAEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNY-SKGSIDFD 337
>gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
Pelagibacter sp. HTCC7211]
Length = 335
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 174/340 (51%), Gaps = 25/340 (7%)
Query: 20 INKINKQIINGHTDVNQLV------PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
+ K+N +II + LV PF+Y W +D +L+ HW+P+E+ + D+ W+
Sbjct: 4 VKKVNSEIIQPK-KMGLLVENPVYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK 62
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTH 132
L++ E+ L+ + FF+ AD + NN L Y + P E + A E +H
Sbjct: 63 --NLSQSEKNLLTQIFRFFTQAD-VEVNNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVA 119
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192
AY ++++++G+ E E ++A+ + K ++DK +++ F N + + + K++
Sbjct: 120 AYSHLLDTIGMPESE-YSAFMKYKEMKDKYDYMQDF------------NVNSKEDIAKTV 166
Query: 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN 252
VF+ EGL + F +L R NKM G ++ + +RDE++HCN I + EN
Sbjct: 167 AVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFINEN 226
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIG 311
P +WT + KE+ + I E + + G + GL + K Y+RFI N R+ Q+G
Sbjct: 227 PEIWTPKLKKELYEACRTIIAHEDAFIDLAFEMGPMEGLTAQEVKDYIRFIGNRRLTQLG 286
Query: 312 IKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGT 351
++ I+ ++NP W+ M++ + NFFE R EY T
Sbjct: 287 LEPIYDVDKNPLGWLDTMLNAVEHMNFFEGRATEYSKAST 326
>gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter
bethesdensis CGDNIH1]
gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter
bethesdensis CGDNIH1]
Length = 339
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 172/321 (53%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ +L HW+P+E+ + D++ W L E E+ LV + FF+ +D +
Sbjct: 32 PFRYPWAYEAWLVQQQVHWLPEEVPLADDVKDWHR--NLNEVEQHLVTQIFRFFTQSD-V 88
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E+E ++A+ + K
Sbjct: 89 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKYK 146
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + +++ K+L F EGL + F +L R
Sbjct: 147 EMKDKYDYMHSF------------SVDSKREIAKTLAAFGAFTEGLQLFASFAILLNFPR 194
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
K+ G ++ + +RDE++HC I L + EN +WT + +EI Q+ +E E
Sbjct: 195 FGKLKGMGQIVSWSVRDETLHCLSIIKLFHVFIDENREIWTEDLRQEIRQICATIVEHED 254
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL+ KSY+R+IA+ R+ Q+G++ +F ERNP PW+ +M++ +
Sbjct: 255 AFIDLAFELGSVEGLDAAQVKSYIRYIADRRLIQLGLEPLFHVERNPLPWIDDMLNAVEH 314
Query: 336 SNFFETRVMEYQSGGTLD-WE 355
+NFFE R EY T+ WE
Sbjct: 315 ANFFENRATEYSRASTVGTWE 335
>gi|384154733|ref|YP_005537548.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter
butzleri ED-1]
gi|345468287|dbj|BAK69738.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
butzleri ED-1]
Length = 339
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 196/351 (55%), Gaps = 19/351 (5%)
Query: 8 KKKTLKINSFERINKINKQIINGHTD-VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K +S E +N ++++ G++D + KY WA + + + AN W P+E+ M
Sbjct: 3 RKTNYNPDSKESLN--DRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTG 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D + +K LT E+R+ L DSL NN++ +ITAPE L RQ++E
Sbjct: 61 DAKDYK---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA H+ +Y +VES+ + I++ + +R+K+ ++ +V +L +G+ +D+
Sbjct: 118 EANHSKSYAVMVESISDNTDLIYDMWKNDAKLREKNTYIA---EVYKNL---SGDI-DDR 170
Query: 187 KLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
K++ L +FA I+EGL+FY GF I ALG+ KM+GSS++ ++I RDE H ++I
Sbjct: 171 KIV--LALFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMI 228
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T+E + + +F KA++LE + ILG + Y+ ++A+
Sbjct: 229 NSVRKERPDLFTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADR 288
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLDWE 355
R++ +G K + ++P PW+ + +NFFE V+ Y S G++D++
Sbjct: 289 RLEAVGYKPEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNY-SKGSIDFD 337
>gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
butzleri JV22]
gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
butzleri JV22]
Length = 339
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 195/351 (55%), Gaps = 19/351 (5%)
Query: 8 KKKTLKINSFERINKINKQIINGHTD-VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K +S E +N ++++ G++D + KY WA + + + AN W P+E+ M
Sbjct: 3 RKTNYNPDSKESLN--DRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTG 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D + +K LT E+R+ L DSL NN++ +ITAPE L RQ++E
Sbjct: 61 DAKDYK---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYE 117
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA H+ +Y +VES+ + I++ + +R+K+ ++ +V +L +G+ +D+
Sbjct: 118 EANHSKSYAVMVESISDNTDLIYDMWKNDAKLREKNTYIA---EVYKNL---SGDI-DDR 170
Query: 187 KLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
K++ L +FA I+EGL+FY GF I ALG+ KM+GSS++ ++I RDE H ++I
Sbjct: 171 KIV--LALFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMI 228
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T E + + +F KA++LE + ILG + Y+ ++A+
Sbjct: 229 NSVRKERPDLFTQELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADR 288
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLDWE 355
R++ +G K + ++P PW+ + +NFFE V+ Y S G++D++
Sbjct: 289 RLEAVGYKAEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNY-SKGSIDFD 337
>gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS1]
gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS5]
gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS5]
gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS1]
Length = 342
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 191/351 (54%), Gaps = 17/351 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK S E+++ ++QI G+ T + L KY WA + + N W P+E++M
Sbjct: 5 SRKKIYNPQSQEQVS--DRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSMH 62
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D + + L+ +E+ R L DSL NN++ IT+PE L+RQA+
Sbjct: 63 GDKNHY---LHLSPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 119
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+H+Y +VES+ + I+ + ++++K+ D + + + N +
Sbjct: 120 EEALHSHSYAVMVESISANSDSIYEMWRTDVALKNKN-------DCIAQIYMELSNNPTE 172
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
LLK+L I+EG++FY GF AL R +M+GS+++ ++I RDE H + ++I
Sbjct: 173 YNLLKALFA-NQILEGIYFYSGFSFFYALARSGRMLGSAQMIRFIQRDELTHLHLFQNMI 231
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
NT++ E +L++ E E+ ++F +A++LE + +L L+ + ++Y ++A+
Sbjct: 232 NTLRKERSDLFSPELIAEVNEMFKQAVDLESAWGAYITQGEMLDLSPQILRTYTEYLADT 291
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHIKKE-SNFFETRVMEYQSGGTLDWE 355
R+ +G+ +++ +NP W+ + + SNFFE +V Y S G+L++E
Sbjct: 292 RLAVVGLPKLYN-SQNPIKWVDQFANFNSHRSNFFEAKVSNY-SKGSLNFE 340
>gi|409401933|ref|ZP_11251568.1| ribonucleotide-diphosphate reductase subunit beta [Acidocella sp.
MX-AZ02]
gi|409129423|gb|EKM99279.1| ribonucleotide-diphosphate reductase subunit beta [Acidocella sp.
MX-AZ02]
Length = 341
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 167/321 (52%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ +L+ HW+P+E+ + D+ W LTE ER L+ + FF+ AD +
Sbjct: 25 PFRYPWAYEAWLTQQRVHWLPEEVPLAEDVRDWHK--KLTEGERNLLTQIFRFFTQAD-V 81
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ ELE + A+ + K
Sbjct: 82 EVNNCYMKQYSQVFKP-TEVLMMLSAFSNIETVHIAAYSHLLDTVGMPELE-YQAFLKYK 139
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + ++ ++ K+L F EGL + F +L R
Sbjct: 140 EMKDKYDYMHSF------------SMESKHEIAKTLAAFGAFTEGLQLFATFAILLNFPR 187
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDES+HC+ L T ENP +W+ + +E+ Q ++ E
Sbjct: 188 FNKMKGMGQIITWSVRDESLHCDSITKLFLTFISENPEVWSEQLRQELYQTCATIVDHED 247
Query: 277 YYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL K Y+R+IA+ R+ +G+ +F E+NP W+ EM++ +
Sbjct: 248 AFIDLAFEFGAVEGLTAAEVKRYIRYIADRRLAGLGLNALFHVEKNPLSWLDEMLNAVEH 307
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 308 TNFFENRSTEYSKAATSGSWE 328
>gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila simulans]
gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
wRi]
gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila simulans]
gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
wRi]
Length = 329
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 167/315 (53%), Gaps = 15/315 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+ E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y +I P E L + E IH AY Y+++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K E++ L+F+ + + + K+L VF EGL + F +L R
Sbjct: 128 MRKKYEYM---------LEFEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
KM G ++ + RDE++H N I L NT EN +W EF +E+ +ELE
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL+ + ++Y+R++AN R+ Q+G++ I+ NP PW+ E+++ + +
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298
Query: 337 NFFETRVMEYQSGGT 351
NFFE RV EY T
Sbjct: 299 NFFENRVTEYSRAAT 313
>gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 329
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 167/315 (53%), Gaps = 15/315 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+ E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y +I P E L + E IH AY Y+++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K E++ L+F+ + + + K+L VF EGL + F +L R
Sbjct: 128 MRKKYEYM---------LEFEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
KM G ++ + RDE++H N I L NT EN +W EF +E+ +ELE
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL+ + ++Y+R++AN R+ Q+G++ I+ NP PW+ E+++ + +
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPTPWLDEILNGVEHT 298
Query: 337 NFFETRVMEYQSGGT 351
NFFE RV EY T
Sbjct: 299 NFFENRVTEYSRAAT 313
>gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Madrid E]
gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
str. Wilmington]
gi|383487917|ref|YP_005405596.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Chernikova]
gi|383488763|ref|YP_005406441.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Katsinyian]
gi|383489602|ref|YP_005407279.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Dachau]
gi|383499743|ref|YP_005413104.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. BuV67-CWPP]
gi|383752473|ref|YP_005427573.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
str. TH1527]
gi|383843308|ref|YP_005423811.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
str. B9991CWPP]
gi|386082362|ref|YP_005998939.1| ribonucleoside-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Rp22]
gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia
prowazekii str. Madrid E]
gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
prowazekii str. Rp22]
gi|380759116|gb|AFE54351.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
str. TH1527]
gi|380759955|gb|AFE55189.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
str. B9991CWPP]
gi|380760796|gb|AFE49318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Chernikova]
gi|380761642|gb|AFE50163.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Katsinyian]
gi|380762489|gb|AFE51009.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. BuV67-CWPP]
gi|380763325|gb|AFE51844.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Dachau]
Length = 324
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 163/321 (50%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F N + + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF------------GVDNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|383487338|ref|YP_005405018.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. GvV257]
gi|383500579|ref|YP_005413939.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. RpGvF24]
gi|380757703|gb|AFE52940.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. GvV257]
gi|380758276|gb|AFE53512.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. RpGvF24]
Length = 324
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 163/321 (50%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F N + + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF------------GVDNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
Pelagibacter ubique HTCC1002]
gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
Pelagibacter ubique HTCC1002]
Length = 342
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 166/315 (52%), Gaps = 18/315 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y W +D +L+ HW+P+E+ + D+ W+ LT+ E+ L+ + FF+ AD +
Sbjct: 35 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQAD-V 91
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
N L Y + P E + A E +H AY ++++++G+ E E ++A+ + K
Sbjct: 92 EVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKYKE 150
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK +++ F D+ ++K D L ++ VF+ EGL + F +L R
Sbjct: 151 MKDKYDYMQNF-----DM-----SSKKDIAL--TVAVFSAFTEGLQLFASFAILLNFPRH 198
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HCN I L ENP +WT E E+ + IE E
Sbjct: 199 NKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHEDA 258
Query: 278 YAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL + K Y+RFIAN R+ Q+G++ I+ ++NP W+ M++ +
Sbjct: 259 FIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSMLNAVEHM 318
Query: 337 NFFETRVMEYQSGGT 351
NFFE R EY T
Sbjct: 319 NFFEGRSTEYSKAAT 333
>gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Pelagibacter ubique HTCC1062]
gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Pelagibacter ubique HTCC1062]
Length = 337
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 166/315 (52%), Gaps = 18/315 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y W +D +L+ HW+P+E+ + D+ W+ LT+ E+ L+ + FF+ AD +
Sbjct: 30 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQAD-V 86
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
N L Y + P E + A E +H AY ++++++G+ E E ++A+ + K
Sbjct: 87 EVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKYKE 145
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK +++ F D+ ++K D L ++ VF+ EGL + F +L R
Sbjct: 146 MKDKYDYMQNF-----DM-----SSKKDIAL--TVAVFSAFTEGLQLFASFAILLNFPRH 193
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HCN I L ENP +WT E E+ + IE E
Sbjct: 194 NKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHEDA 253
Query: 278 YAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL + K Y+RFIAN R+ Q+G++ I+ ++NP W+ M++ +
Sbjct: 254 FIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSMLNAVEHM 313
Query: 337 NFFETRVMEYQSGGT 351
NFFE R EY T
Sbjct: 314 NFFEGRSTEYSKAAT 328
>gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
canadensis str. McKiel]
gi|379022928|ref|YP_005299589.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
canadensis str. CA410]
gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
canadensis str. McKiel]
gi|376323866|gb|AFB21107.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
canadensis str. CA410]
Length = 324
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + E
Sbjct: 175 FNKMKGMGQVIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYGACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 327
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 166/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T +ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVIENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 331
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 166/315 (52%), Gaps = 15/315 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK I L E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWK--IKLLNVEKNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y +I P E L + E IH AY Y+++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K E++ L+F+ + + + K+L VF EGL + F +L R
Sbjct: 128 MRKKYEYM---------LEFEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
KM G ++ + RDE++H N I+L NT EN +W EF + + + LE
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEGLYSACRTIVGLEDE 238
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL+ + ++Y+R+IAN R+ Q+G+K I+ NP PW+ E+++ + +
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYIANRRLMQLGLKPIYDINDNPLPWLDEILNGVEHT 298
Query: 337 NFFETRVMEYQSGGT 351
NFFE RV EY T
Sbjct: 299 NFFENRVTEYSRAAT 313
>gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
proteobacterium HIMB114]
gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
proteobacterium HIMB114]
Length = 342
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 162/315 (51%), Gaps = 18/315 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y W +D +L+ HW+P+EI + D+ W+ LT E+ L+ + FF+ AD +
Sbjct: 32 PFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEKNLLTQIFRFFTQAD-V 88
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN L Y + P E + A E IH AY ++++++G+ E E ++A+ + K
Sbjct: 89 EVNNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIGMPESE-YSAFLKYKE 147
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK +++ F N N +++ K++ VF+ EGL + F +L R
Sbjct: 148 MKDKYDYMQNF------------NVNNKREIAKTVAVFSAFTEGLQLFASFAILLNFPRF 195
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HCN I + NT ENP L KEI +E E
Sbjct: 196 NKMKGMGQVVTWSVRDETLHCNSMIKIFNTFCAENPGLLDESLKKEITDACRTIVEHEDA 255
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G I GL + K Y+R+IAN R+ Q+ + +I+ + NP W+ M++ +
Sbjct: 256 FIDLAFEMGPIEGLTAQQIKDYIRWIANRRLVQLKLDEIYDVKENPLEWIDTMLNGVEHM 315
Query: 337 NFFETRVMEYQSGGT 351
NFFE R EY T
Sbjct: 316 NFFEGRATEYSKAST 330
>gi|402703565|ref|ZP_10851544.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
helvetica C9P9]
Length = 327
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 164/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+EI + D++ WK L E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEIPLADDVKDWK--YNLIPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY Y+++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSQVFKP-TEVLMMLSAFSNMETVHIAAYSYLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|402496591|ref|YP_006555851.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont of Onchocerca ochengi]
gi|398649864|emb|CCF78034.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont of Onchocerca ochengi]
Length = 322
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 165/315 (52%), Gaps = 15/315 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+++ D+ WK + TE + L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVSLADDVNDWKTKLSGTE--KNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y +I P E L + E IH AY Y+++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMRHYTNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
R K E++ L+F+ + + + K+L VF EGL + F +L R
Sbjct: 128 TRKKYEYM---------LEFEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
KM G ++ + RDE++H N I+L NT EN +W EF +E+ + LE
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNEEFKEELYSACRTIVRLEDE 238
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL+ + +SY+R+IAN R+ Q+ +K ++ NP PW+ E+++ + +
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRSYIRYIANRRLIQLDLKPMYNINNNPLPWLDEILNGVEHT 298
Query: 337 NFFETRVMEYQSGGT 351
NFFE RV EY T
Sbjct: 299 NFFENRVTEYSRAAT 313
>gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
centenum SW]
gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum
centenum SW]
Length = 322
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 167/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ +L+ HW+P+E+ + D++ W+ LTE ER L+ + FF+ AD +
Sbjct: 14 PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQ--KLTEAERNLLTQIFRFFTQAD-V 70
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y + P E L + E +H AY ++++++G+ E+E ++A+ K
Sbjct: 71 EVNNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPEIE-YSAFLRYKE 129
Query: 158 IRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +D L D+ K+L VF EGL + F ++ R
Sbjct: 130 MKDKYDYMQGFNVDSLEDIA-------------KTLAVFGAFTEGLQLFASFAILMNFPR 176
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H I L T ENP +WT F +E+ + E
Sbjct: 177 FNKMKGMGQIVTWSVRDETLHTLSMIKLFRTFVNENPQVWTEAFQRELTVCCETIVHHED 236
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + G+ + K Y+R+IA+ R+ Q+G++ ++ E+NP PWM +++ +
Sbjct: 237 AFIDLAFEMGPVEGMTAEDVKRYIRWIADRRLGQLGLEPVYRIEKNPLPWMDAILNGIEH 296
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 297 TNFFENRATEYSKAAT 312
>gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
of Muscidifurax uniraptor]
gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
of Muscidifurax uniraptor]
Length = 329
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 166/315 (52%), Gaps = 15/315 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+ E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN + Y +I P E L + E IH AY Y+++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K E++ L+F+ + + + K+L VF EGL + F +L R
Sbjct: 128 MRKKYEYM---------LEFEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
KM G ++ + RDE++H N I L NT EN +W EF +E+ +ELE
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDDEFKEELYSACRTIVELEDE 238
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL+ + ++Y+ ++AN R+ Q+G++ I+ NP PW+ E+++ + +
Sbjct: 239 FIKLAFDFGDVEGLSAEEVRNYIHYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298
Query: 337 NFFETRVMEYQSGGT 351
NFFE RV EY T
Sbjct: 299 NFFENRVTEYSRAAT 313
>gi|417571665|ref|ZP_12222521.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC189]
gi|395550240|gb|EJG16254.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC189]
Length = 335
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 176/343 (51%), Gaps = 27/343 (7%)
Query: 21 NKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
N+IN + I+ D+ + P K+ WA N W P +NM D+ + L
Sbjct: 11 NRINDRRLILGPKDDLMAISPMKHTWAKGILDRMENNTWFPHVVNMADDVASYNR---LN 67
Query: 79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
+R + + L F S D + NNI +H+T+PE L RQA+EEA+H +Y I+
Sbjct: 68 AADRFMFDKALAFLSNLDGIQFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATII 127
Query: 139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
E++ LD + ++ + + K++F++ +L +K +C+
Sbjct: 128 ETVSLDPMSVYMTFERDGLLAQKNQFILKQSRLL------------GEKFSAEGFALSCV 175
Query: 199 ----MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD-ESMHCNFGIDLINTIKMENP 253
+EG++F+ GF+ L + +M+GS+++ +YI RD E H + +++T++ EN
Sbjct: 176 SNVLLEGVYFFSGFLSFYLLADKGEMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENK 235
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
+++T F + ++FL + E+E + + + KG+ N K + Y++ +AN R +QI
Sbjct: 236 DVFTQSFWNKALEVFLTSSEMEISWGK-YITKGV--TNPKAIEDYIKHLANLRAEQIQAP 292
Query: 314 QI-FPYERNPFPWMSEMIHIK-KESNFFETRVMEYQSGGTLDW 354
+ +P +NPFPW+ + E NFFETRV +Y+ GG L W
Sbjct: 293 FVPYPGVKNPFPWVEQFSKPNTSEKNFFETRVTDYKVGGALVW 335
>gi|341583870|ref|YP_004764361.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
heilongjiangensis 054]
gi|340808096|gb|AEK74684.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
heilongjiangensis 054]
Length = 327
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 165/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|451817103|ref|YP_007453304.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783082|gb|AGF54050.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 344
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 113/351 (32%), Positives = 184/351 (52%), Gaps = 14/351 (3%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEIN 63
+N KK L N F + K+IING+T ++N KYNWA D Y N W+P+EIN
Sbjct: 1 MNINKKPL-FNEFGDRDVSKKRIINGNTTNLNDFNNMKYNWASDWYRQGMNNFWIPEEIN 59
Query: 64 MQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQ 123
+ +D++ ++N L EEER + L F DS+ N+ +ITA E L Q
Sbjct: 60 LSQDLKDYQN---LLEEERTAYDKILSFLIFLDSVQTANLS-NINNYITASEINLCLTIQ 115
Query: 124 AFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
+F+EA+H+ +Y Y+++S+ E +EI DE L+ + DL + N
Sbjct: 116 SFQEAVHSQSYSYMLDSICSPE-----ERNEILYQWKDDEILLRRNKFIGDLYNEFINDP 170
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
D LL++L+ I+EG++FY GF+ L R KM GS++ +YI RDE+ H +
Sbjct: 171 TDSNLLRTLMA-NYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRN 229
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
+I ++ ENP L+T E +E+ Q+ +E E + + I G+N K + Y++++
Sbjct: 230 IIKELRNENPQLFTREIKEELRQMMKSGVEQEILWGHYVIGDKIQGINKKLIEDYIKYLG 289
Query: 304 NCRMKQIGIKQIF-PYERNPFPWMSEMIHIK-KESNFFETRVMEYQSGGTL 352
N R+K I ++ +F Y NP W+ + + +++FFE + Y +L
Sbjct: 290 NKRLKDINLEPLFEEYNENPAAWVDNLSNANFVKTDFFEAKSTAYAKSASL 340
>gi|383751298|ref|YP_005426399.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
slovaca str. D-CWPP]
gi|379774312|gb|AFD19668.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
slovaca str. D-CWPP]
Length = 328
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 23/322 (7%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++DK +++ F +D D+ +L VF EGL + F +L
Sbjct: 127 EMKDKYDYMQQFGVDAKEDIA-------------TTLAVFGAFTEGLQLFASFAIMLNFP 173
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 174 RFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFE 233
Query: 276 YYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 234 DAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVE 293
Query: 335 ESNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 294 HTNFFENRTTEYSKAATTGSWE 315
>gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
conorii str. Malish 7]
gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
sibirica 246]
gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Iowa]
gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
africae ESF-5]
gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
peacockii str. Rustic]
gi|378721337|ref|YP_005286224.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Colombia]
gi|378722689|ref|YP_005287575.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Arizona]
gi|378724045|ref|YP_005288929.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Hauke]
gi|379017833|ref|YP_005294068.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Hino]
gi|379019012|ref|YP_005295246.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Hlp#2]
gi|379712404|ref|YP_005300743.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
philipii str. 364D]
gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii
str. Malish 7]
gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
sibirica 246]
gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
rickettsii str. Iowa]
gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae
ESF-5]
gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
peacockii str. Rustic]
gi|376326361|gb|AFB23600.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Colombia]
gi|376327713|gb|AFB24951.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Arizona]
gi|376329049|gb|AFB26286.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
philipii str. 364D]
gi|376330399|gb|AFB27635.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Hino]
gi|376331592|gb|AFB28826.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Hlp#2]
gi|376333060|gb|AFB30293.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Hauke]
Length = 328
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 23/322 (7%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++DK +++ F +D D+ +L VF EGL + F +L
Sbjct: 127 EMKDKYDYMQQFGVDAKEDIA-------------TTLAVFGAFTEGLQLFASFAIMLNFP 173
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 174 RFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFE 233
Query: 276 YYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 234 DAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVE 293
Query: 335 ESNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 294 HTNFFENRTTEYSKAATTGSWE 315
>gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
str. Hartford]
gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
str. Hartford]
Length = 327
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 164/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYIQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIISWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
massiliae MTU5]
gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
massiliae MTU5]
Length = 336
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 23/322 (7%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 13 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 69
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 70 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 127
Query: 157 SIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++DK +++ F +D D+ +L VF EGL + F +L
Sbjct: 128 EMKDKYDYMQQFGVDAKEDIA-------------TTLAVFGAFTEGLQLFASFAIMLNFP 174
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 RFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFE 234
Query: 276 YYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 DAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVE 294
Query: 335 ESNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 HTNFFENRATEYSKAATTGSWE 316
>gi|383481563|ref|YP_005390478.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
gi|378933902|gb|AFC72405.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
Length = 333
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 23/322 (7%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++DK +++ F +D D+ +L VF EGL + F +L
Sbjct: 127 EMKDKYDYMQQFGVDAKEDIA-------------TTLAVFGAFTEGLQLFASFAIMLNFP 173
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 174 RFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFE 233
Query: 276 YYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 234 DAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVE 293
Query: 335 ESNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 294 HTNFFENRATEYSKAATTGSWE 315
>gi|383483985|ref|YP_005392898.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
parkeri str. Portsmouth]
gi|378936339|gb|AFC74839.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
parkeri str. Portsmouth]
Length = 328
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 23/322 (7%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++DK +++ F +D D+ +L VF EGL + F +L
Sbjct: 127 EMKDKYDYMQQFGVDAKEDIA-------------TTLAVFGAFTEGLQLFASFAIMLNFP 173
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 174 RFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETVRKRIYEACTTIVHFE 233
Query: 276 YYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 234 DAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVE 293
Query: 335 ESNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 294 HTNFFENRTTEYSKAATTGSWE 315
>gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter diazotrophicus PAl 5]
gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter diazotrophicus PAl 5]
gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 353
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 166/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D +L+ HW+P+E+ + D++ W LTE E+ LV + FF+ +D +
Sbjct: 36 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHR--TLTESEQHLVTQIFRFFTQSD-V 92
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E IH AY ++++++G+ E+E ++A+ + K
Sbjct: 93 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEME-YSAFLKYK 150
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + ++ ++L F EGL + F +L R
Sbjct: 151 EMKDKYDYMQGF------------SVDSKPEIARTLAAFGAFTEGLQLFASFAILLNFPR 198
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NK+ G ++ + +RDE++HC L ENP +WT +I Q+ +E E
Sbjct: 199 FNKLKGMGQIVSWSVRDETLHCLSMARLFRVFIQENPEIWTDALRADIVQICRDIVEHED 258
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL+ K+Y+RFIA+ R+ +G+ I+ NP PW+ +M++ +
Sbjct: 259 AFIDLCFEMGPVEGLDGDLVKTYIRFIADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEH 318
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 319 TNFFENRSTEYSRASTTGSWE 339
>gi|379016402|ref|YP_005292637.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Brazil]
gi|376324926|gb|AFB22166.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Brazil]
Length = 328
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 162/321 (50%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF------------GVGAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRTTEYSKAATTGSWE 315
>gi|383501706|ref|YP_005415065.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
australis str. Cutlack]
gi|378932717|gb|AFC71222.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
australis str. Cutlack]
Length = 327
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 164/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYAAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYIQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|350273537|ref|YP_004884850.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
japonica YH]
gi|348592750|dbj|BAK96711.1| ribonucleotide-diphosphate reductase beta subunit [Rickettsia
japonica YH]
Length = 327
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 23/322 (7%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++DK +++ F +D D+ +L VF EGL + F +L
Sbjct: 127 EMKDKYDYMQQFGVDAKEDIA-------------TTLAVFGAFTEGLQLFASFAIMLNFP 173
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + +RDE++H N I L T ENP +WT K I + E
Sbjct: 174 RFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYAACTTIVHFE 233
Query: 276 YYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 234 DAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVE 293
Query: 335 ESNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 294 HTNFFENRATEYSKAATTGSWE 315
>gi|383482187|ref|YP_005391101.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
montanensis str. OSU 85-930]
gi|378934541|gb|AFC73042.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
montanensis str. OSU 85-930]
Length = 327
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 162/321 (50%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLMQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F + + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF------------GVDAKENIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis
URRWXCal2]
gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis
URRWXCal2]
Length = 327
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 164/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK L E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLAPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
tsutsugamushi str. Ikeda]
gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia
tsutsugamushi str. Ikeda]
Length = 359
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 168/321 (52%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+ + + HW+P+E+ + DI+ WK LT E+ L+ + FF+ AD +
Sbjct: 27 PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 83
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P Q +L AF E IH AY ++++++G+ E E + A+ + K
Sbjct: 84 EVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYK 141
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
+++DK +++ F N N +++ +L VF EG+ + F +L R
Sbjct: 142 AMKDKYDYMQRF------------NVDNKEEIATTLAVFGAFTEGVQLFASFAILLNFPR 189
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T E P +WT + I + I E
Sbjct: 190 YNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYEACCTIIHFED 249
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G+ GL + K Y+R+IA+ R+ Q+G+K+ + E+NP W+ ++++ +
Sbjct: 250 AFIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTWLDQILNGVEH 309
Query: 336 SNFFETRVMEY-QSGGTLDWE 355
+NFFE RV EY +S T W+
Sbjct: 310 TNFFENRVTEYTRSATTGSWD 330
>gi|347759109|ref|YP_004866671.1| ribonucleotide reductase, small chain family protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591627|gb|AEP10669.1| ribonucleotide reductase, small chain family protein [Micavibrio
aeruginosavorus ARL-13]
Length = 339
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 166/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y W ++ +L+ HW+P+E+ + D+ WKN LT E+ L+ + FF+ +D +
Sbjct: 10 PFLYPWCYEAWLTQQRIHWIPEEVPLAEDVRDWKNK--LTAAEKTLLTQIFRFFTQSD-V 66
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P Q +L AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 67 EVNNCYMKHYSQVFGPVEVQMML-SAFSNIETVHIAAYSHLLDTIGMPEIE-YSAFMKYK 124
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ + + + + + K++ +F EGL + F ++ R
Sbjct: 125 EMKDKFDYM------------QGASMASRRDIAKTMAMFGAFTEGLQLFASFAILMNFPR 172
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++HC I L N EN ++W E +EI + + E
Sbjct: 173 FNKMKGMGQIVTWSVRDETLHCLSMIKLFNAFIAENKDIWDDELKREITESCKTIVGFED 232
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G I GL + K+Y+R+I + R++Q+ + +F E+NP PWM M++ +
Sbjct: 233 AFIDLAFEGGEIEGLTPQEVKNYIRYIGDRRLQQLNLDPVFGIEKNPLPWMDIMLNGAEH 292
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 293 ANFFENRATEYSRAST 308
>gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
tsutsugamushi str. Boryong]
gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia
tsutsugamushi str. Boryong]
Length = 329
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 168/321 (52%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+ + + HW+P+E+ + DI+ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P Q +L AF E IH AY ++++++G+ E E + A+ + K
Sbjct: 69 EVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
+++DK +++ F N N +++ +L VF EG+ + F +L R
Sbjct: 127 AMKDKYDYMQRF------------NVDNKEEIATTLAVFGAFTEGVQLFASFAILLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T E P +WT + I + I E
Sbjct: 175 YNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYEACCTIIHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G+ GL + K Y+R+IA+ R+ Q+G+K+ + E+NP W+ ++++ +
Sbjct: 235 AFIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTWLDQILNGVEH 294
Query: 336 SNFFETRVMEY-QSGGTLDWE 355
+NFFE RV EY +S T W+
Sbjct: 295 TNFFENRVTEYTRSATTGSWD 315
>gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas
denitrificans DSM 1251]
gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans
DSM 1251]
Length = 340
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 184/350 (52%), Gaps = 24/350 (6%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+KK S E +N +++I G+ T + +L KY WA++ + N W P+E++M
Sbjct: 2 NRKKIYNPESNENVN--DRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
RD+ +K +T+ E+ + L DSL NNI+ ++T+PE L+RQA+
Sbjct: 60 RDVSDYKQ---ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAY 116
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA+H+ +Y +V+++ + EI+ + ++ K++ + + L+ K N
Sbjct: 117 EEALHSQSYAVMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELS----KNPTEHN- 171
Query: 186 QKLLKSLIVFAC----IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
V AC I+EG++FY GF I L R KM+GS+++ ++I RDE H
Sbjct: 172 -------FVKACFANQILEGIYFYSGFAYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLF 224
Query: 242 IDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRF 301
+LIN+++ E P+L+ + +E+ ++F +A+ LE + + ILGL + Y+++
Sbjct: 225 QNLINSLRKERPDLFNEKLKEEVIEMFKEAVALEVAWGKYITGGQILGLTDAIIEQYIQY 284
Query: 302 IANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
+A+ R+ +G +++ NP W+ + +++NFFE V Y G
Sbjct: 285 LADDRLTSVGFAKLYNV-TNPIKWVDDFSKFNDQKTNFFEGTVANYSKGS 333
>gi|339319779|ref|YP_004679474.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Midichloria mitochondrii IricVA]
gi|338225904|gb|AEI88788.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Midichloria mitochondrii IricVA]
Length = 341
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 168/322 (52%), Gaps = 31/322 (9%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y A+D + HW+P+E+ M D++ WK LTE E+ L+ + FF+ AD +
Sbjct: 32 PFHYPEAYDYWKLQQQLHWLPEEVPMADDVKDWKKV--LTEPEKHLLTQIFRFFTQAD-I 88
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P Q +L AF E IH AY +++++LG+ E+E ++A+ + K
Sbjct: 89 EVNNCYMRHYSRVFKPTEVQMML-AAFSNMETIHIDAYSHLLDTLGMPEVE-YSAFLKYK 146
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
+++K +++ F N + + + K+L VF EGL + F +L R
Sbjct: 147 EMKEKYDYMQQF------------NVNSKEDIAKTLAVFGAFTEGLQLFASFAMLLNFQR 194
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT---TEFCKEIEQLFLKA-- 271
KM G ++ + +RDE++H N + L ENP +W T+F E + +K
Sbjct: 195 FGKMKGMGQIIAWSVRDETLHTNAIMWLFKAFITENPEVWNKKLTDFLHEACETIIKHED 254
Query: 272 --IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
I+L + + I G+ K Y+R+IA+ R+ Q+G+++++ ERNP PW+ E+
Sbjct: 255 AFIDLAFGFE-----GAIEGMTASDIKQYIRYIADRRLTQLGLRELYKIERNPLPWLDEI 309
Query: 330 IHIKKESNFFETRVMEYQSGGT 351
++ + +NFFE RV EY T
Sbjct: 310 LNAPEHTNFFENRVTEYAKAAT 331
>gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
Length = 346
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 171/329 (51%), Gaps = 12/329 (3%)
Query: 26 QIINGHTD-VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
IING T+ + L Y WA++ + AN W P+E+++ D ++ L E+R+
Sbjct: 20 SIINGCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRM 76
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
+ L DS+ NN ITAPE L+RQAFEEA+H+ +Y +V+S+ L+
Sbjct: 77 YDKALSQLIFMDSIQTNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLN 136
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
EI+ + +++R K+EF+ +V + K N ++ K+ +IV +EG++F
Sbjct: 137 TDEIYEMWRADENLRKKNEFIG---NVYEEWGIKALNGDDEAKIY--MIVANQALEGIYF 191
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y GF L R KM+GS+++ ++I RDE H ++ IK E P+L+T E + I
Sbjct: 192 YNGFAAFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIRNI 251
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY--ERNP 322
+ + A ELE + ILGL+ + + +++AN R +G++ +FP +NP
Sbjct: 252 KDMLYAAYELERDWGFYITNDEILGLSKELIDRFTKYLANKRAHAMGLELLFPEIGLKNP 311
Query: 323 FPWMSEMIHI-KKESNFFETRVMEYQSGG 350
W ++++NFFE V+ Y G
Sbjct: 312 ISWFDSFSSFNEQKTNFFEGNVVNYSKGS 340
>gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
bellii OSU 85-389]
gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
bellii OSU 85-389]
Length = 324
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 163/321 (50%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F ++ + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF------------GVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE- 275
NKM G ++ + +RDE++H N I L T ENP +WT I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234
Query: 276 YYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ A GI GL + Y+R+IA+ R+ Q+G+K I+ + NP PW+ EM++ +
Sbjct: 235 AFIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
bellii RML369-C]
gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii
RML369-C]
Length = 324
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 163/321 (50%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F ++ + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF------------GVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE- 275
NKM G ++ + +RDE++H N I L T ENP +WT I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234
Query: 276 YYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ A GI GL + Y+R+IA+ R+ Q+G+K I+ + NP PW+ EM++ +
Sbjct: 235 AFIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str.
'Sheila Smith']
Length = 336
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 165/328 (50%), Gaps = 27/328 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG------LTEEERRLVKRNLGFF 92
PF Y WA++ + + HW+P+E+ + D++ WK + LT E+ L+ + FF
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFRFF 71
Query: 93 STADSLAANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFN 150
+ AD + NN + Y + P ++ AF E +H AY ++++++G+ E+E ++
Sbjct: 72 TQAD-IEVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YS 128
Query: 151 AYHEIKSIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFV 209
A+ + K ++DK +++ F +D D+ +L VF EGL + F
Sbjct: 129 AFLKYKEMKDKYDYMQQFGVDAKEDIA-------------TTLAVFGAFTEGLQLFASFA 175
Query: 210 QILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFL 269
+L R NKM G ++ + +RDE++H N I L T ENP +WT K I +
Sbjct: 176 IMLNFPRFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACT 235
Query: 270 KAIELEYYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSE 328
+ E + E GI GL + Y+R+IA+ R+ Q+G+K ++ NP PW+ E
Sbjct: 236 TIVHFEDAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDE 295
Query: 329 MIHIKKESNFFETRVMEYQSGGTL-DWE 355
M++ + +NFFE R EY T WE
Sbjct: 296 MLNGVEHTNFFENRTTEYSKAATTGSWE 323
>gi|359410115|ref|ZP_09202580.1| ribonucleotide reductase [Clostridium sp. DL-VIII]
gi|357168999|gb|EHI97173.1| ribonucleotide reductase [Clostridium sp. DL-VIII]
Length = 344
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 179/333 (53%), Gaps = 17/333 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++ING+T ++N KY WA D Y N W+P+E+N+ +DI+ ++N L +EER
Sbjct: 20 KRLINGNTTNLNDFNNMKYTWAADWYRQGMNNFWIPEEVNLSQDIKDYQN---LLDEERT 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DS+ N+ +ITA E L Q+F+EA+H+ +Y Y+++S+
Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAVHSQSYSYMLDSICA 135
Query: 144 DEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
E EI + + K + +++ F+ DL + N + LLKSL+ I+EG
Sbjct: 136 PEKRNEILYQWKDDKVLLNRNRFI-------GDLYNEFINNPTEHNLLKSLMA-NYILEG 187
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF+ L R KM GS++ +YI RDE+ H ++I ++ ENP L+T E
Sbjct: 188 IYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQGENPELFTQEMK 247
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
E+ Q+ +E E + + I G+N KT ++Y++++ N R+K+I ++ +F Y
Sbjct: 248 NELRQMMKVGVEQEILWGYYVIGDAIRGINKKTIENYIKYLGNKRLKEINLEPLFDGYNE 307
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
NP W+ + +++FFE R Y +L
Sbjct: 308 NPALWVDASSNANSVKTDFFEARSTAYAKVASL 340
>gi|399887850|ref|ZP_10773727.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
arbusti SL206]
Length = 342
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 180/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ N+ + +ING+T ++ + KY+WA D Y N W+P+EI++ DI+ +
Sbjct: 9 EKGNRGTESMINGNTTNLREWNRIKYDWASDLYRVLLNNFWIPEEISLNEDIKQFP---Y 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITAPE L QAF+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSIQSENLP-NVSRYITAPEVSSLLNIQAFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E K + +++F+ ++ N ++D + I+
Sbjct: 125 ILDTVTNPITRDKIYDEWREDKHLLKRNKFIAGI--------YQKFNEESDTENFLRTIM 176
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I ++ ENP
Sbjct: 177 ANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLILFQNIIKELRKENPE 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T +E + +E E + + ILGLN + + Y+++I+N R+ IGI
Sbjct: 237 IFTESMLEEFRTMMKTGVEHEIEWGQYVTNNEILGLNDELIEKYIKYISNLRLTAIGIDP 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEITKHPMEWIDSFSRLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|383312573|ref|YP_005365374.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378931233|gb|AFC69742.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Rickettsia amblyommii str. GAT-30V]
Length = 327
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 164/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ + + HW+P+E+ + D++ WK LT E+ L+ + FF+ AD +
Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTSGEKHLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P ++ AF E +H AY ++++++G+ E+E ++A+ + K
Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ F +TK D + +L VF EGL + F +L R
Sbjct: 127 EMKDKYDYMQQF----------GVDTKED--IATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++H N I L T ENP +WT K I + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 277 YYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ E GI GL + Y+R+IA+ R+ Q+G+K ++ NP W+ EM++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLLWLDEMLNGVEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
Length = 342
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 184/343 (53%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ ++ +Q+ING+T ++ + KY+WA Y + N W+P+EI + D+ K
Sbjct: 9 EKGDRGTQQMINGNTTNLREWNRIKYDWAQTLYRTMLNNFWIPEEIALNEDV---KGFPF 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ + R+ITAPE L QAF+E IH +Y Y
Sbjct: 66 LTDGERHAFDKIIAFLNFLDSIQSENLPHLS-RYITAPEVASLLNIQAFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++ F+ D+ + ND+ L++++
Sbjct: 125 ILDTVTNPVTRDKIYDQWREDEELLKRNRFI-------ADIYERFNEEPNDKNFLRAIMA 177
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K ENP
Sbjct: 178 -NYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVVFQNIIKELKKENPE 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
L+T +E ++ +E E + + I+G+N + +Y+++++N R+K IG+++
Sbjct: 237 LFTESMIEEFREMMRVGVEHEIAWGQYVTANEIMGINDQLIDAYIKYLSNQRLKAIGLEE 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P +P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEITTHPMAWIDSFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339
>gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
phagocytophilum HZ]
gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma
phagocytophilum HZ]
Length = 323
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 166/316 (52%), Gaps = 17/316 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+E+E+ L+ + FF+ AD +
Sbjct: 12 PFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--MLSEKEKNLLVQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y +I P ++ AF E IH AY Y+++++G+ E+E + A+ + +
Sbjct: 69 EVNNCYMKHYSNIFRP-TEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLKFE 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++ K +++ +F+ + + + K+L VF EGL + F +L R
Sbjct: 127 VMKKKYDYM---------QRFEECRRGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
KM G ++ + RDES+H + I L NT EN +W + +E+ + LE
Sbjct: 178 FGKMKGMGQIIAWSARDESLHTDSIIRLFNTFVHENGEIWDDDLKQELYDACKVIVMLED 237
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL+ K Y+RFIAN R+KQ+ ++ I+ NP PW+ E+++ +
Sbjct: 238 EFIDLAFALGDVEGLSACEVKRYIRFIANRRLKQLHLEPIYDVAENPLPWLDEILNGVEH 297
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE RV EY T
Sbjct: 298 TNFFENRVTEYARAAT 313
>gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB900]
gi|417874964|ref|ZP_12519790.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH2]
gi|421679380|ref|ZP_16119256.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC111]
gi|421689381|ref|ZP_16129064.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-143]
gi|421808604|ref|ZP_16244448.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC035]
gi|424051302|ref|ZP_17788835.1| hypothetical protein W9G_03756 [Acinetobacter baumannii Ab11111]
gi|425752332|ref|ZP_18870245.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-113]
gi|342227056|gb|EGT92004.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ABNIH2]
gi|404558021|gb|EKA63306.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii IS-143]
gi|404665977|gb|EKB33935.1| hypothetical protein W9G_03756 [Acinetobacter baumannii Ab11111]
gi|410391335|gb|EKP43706.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC111]
gi|410415531|gb|EKP67319.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii OIFC035]
gi|425499077|gb|EKU65137.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii Naval-113]
Length = 309
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 167/325 (51%), Gaps = 25/325 (7%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P K+ WA N W P +NM D+ + L +R + + L F S D
Sbjct: 3 ISPMKHTWAKGILDRMENNTWFPHVVNMADDVASYNR---LNAADRFMFDKALAFLSNLD 59
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
+ NNI +H+T+PE L RQA+EEA+H +Y I+E++ LD + ++ +
Sbjct: 60 GIQFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDG 119
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI----MEGLFFYVGFVQIL 212
+ K++F++ +L +K +C+ +EG++F+ GF+
Sbjct: 120 LLAQKNQFILKQSRLL------------GEKFSAEGFALSCVSNVLLEGVYFFSGFLSFY 167
Query: 213 ALGRQNKMIGSSELYQYILRD-ESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKA 271
L + +M+GS+++ +YI RD E H + +++T++ EN +++T F + ++FL +
Sbjct: 168 LLADKGEMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENKDVFTQSFWNKALEVFLTS 227
Query: 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI-FPYERNPFPWMSEMI 330
E+E + + + KG+ N K + Y++ +AN R +QI + +P +NPFPW+ +
Sbjct: 228 SEMEISWGK-YITKGV--TNPKAIEDYIKHLANLRAEQIQAPFVPYPGVKNPFPWVEQFS 284
Query: 331 HIK-KESNFFETRVMEYQSGGTLDW 354
E NFFETRV +Y+ GG L W
Sbjct: 285 KPNTSEKNFFETRVTDYKVGGALVW 309
>gi|402819817|ref|ZP_10869384.1| nrdF protein [alpha proteobacterium IMCC14465]
gi|402510560|gb|EJW20822.1| nrdF protein [alpha proteobacterium IMCC14465]
Length = 319
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 22/317 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L+ HW+P+E+ + D++ W LT E+ L+ + FF AD +
Sbjct: 12 PFLYPWAYDAWLTQQRIHWLPEEVPLAEDVKDWHK--TLTVGEKNLLTQIFRFFVQAD-V 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P Q +L AF E IH AY ++++++G+ E+E + A+ +
Sbjct: 69 EVNNCYMKHYSQVFKPTEIQMML-SAFSNMETIHIAAYSHLLDTIGMPEVE-YEAFLKYS 126
Query: 157 SIRDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++DK +++ + ++ TD+ K+L VF EGL + F ++
Sbjct: 127 EMKDKYDYMQEWGVETKTDIA-------------KTLAVFGGFTEGLQLFASFAILMNFP 173
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + RDE++H N + L NT ENP +WT E ++ + + E
Sbjct: 174 RFNKMKGMGQIVTWSARDETLHTNSIVRLFNTFVNENPEIWTEETKNDLYKACETVVTHE 233
Query: 276 YYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ + G+ GL K Y+R+I N R+ Q+ + I+ E+NP PWM EM++ +
Sbjct: 234 DAFIDLAFEMGGVEGLEPSEVKDYIRYIGNRRLTQLNLNPIYDIEKNPLPWMDEMLNGIE 293
Query: 335 ESNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 294 HTNFFENRATEYSKAST 310
>gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic) subunit beta
[Candidatus Pelagibacter sp. IMCC9063]
gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Candidatus Pelagibacter sp. IMCC9063]
Length = 345
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 162/315 (51%), Gaps = 18/315 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y W +D +L+ HW+P+E+ + D+ W+ L E+ L+ + FF+ AD +
Sbjct: 35 PFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQK--KLLPHEKNLLTQIFRFFTQAD-V 91
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
NN L Y + P E + A E +H AY ++++++G+ E E ++A+ + K
Sbjct: 92 EVNNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIGMPETE-YSAFLKYKE 150
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK +++ F N + +++ K++ VF+ EGL + F +L R
Sbjct: 151 MKDKYDYMQNF------------NMGDKREIAKTVAVFSAFTEGLQLFASFAILLNFPRF 198
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HCN I + NT ENP L KEI + IE E
Sbjct: 199 NKMKGMGQIVTWSVRDETLHCNSMIKIFNTFCDENPGLLDDSLKKEIYEACSTIIEHEDA 258
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G I GL + K Y+R+IAN R+ Q+ + ++ + NP W+ +M++ +
Sbjct: 259 FIDLAFEMGDIEGLKAEEVKKYIRWIANRRLAQLRLNDLYEVKENPLTWLDDMLNGVEHM 318
Query: 337 NFFETRVMEYQSGGT 351
NFFE R EY T
Sbjct: 319 NFFEGRATEYSKAST 333
>gi|427427291|ref|ZP_18917335.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Caenispirillum salinarum AK4]
gi|425883217|gb|EKV31893.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Caenispirillum salinarum AK4]
Length = 319
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 166/316 (52%), Gaps = 20/316 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y W +D +L HW+P+E+ + D++ W + L++ ER L+ + FF+ +D +
Sbjct: 12 PFAYPWCYDAWLLQQQIHWLPEEVPLADDVKDWHH--KLSDSERHLMTQIFRFFTQSD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P Q +L AF E IH AY ++++++G+ E ++A+ + K
Sbjct: 69 EVNNCYMRHYTRVFKPTEVQMML-AAFSNMETIHIAAYSHLLDTIGMPTTE-YSAFLDYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK +++ + +TK D + K+L VF EGL + F +L R
Sbjct: 127 QMKDKYDYM----------QVWGVDTKED--IAKTLAVFGAFTEGLQLFASFAILLNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDE++HCN I L T ENP++ + E+ + E
Sbjct: 175 FNKMKGMGQIVTWSVRDETLHCNSIIRLYRTFLQENPDVDRAKIEAELVDACKTILHHED 234
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + GL + K+Y+R+IA+ R+ Q+G++ +F ERNP PW+ M++ +
Sbjct: 235 AFIDLAFELGPVEGLAPEDVKTYIRYIADRRLTQLGMEPLFNIERNPLPWLDAMLNAVEH 294
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE R EY T
Sbjct: 295 TNFFENRATEYSKAAT 310
>gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum
lavamentivorans DS-1]
gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans
DS-1]
Length = 319
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 166/321 (51%), Gaps = 21/321 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ +L+ HW+P+E+ + D++ W LTE ER L+ + FF AD +
Sbjct: 12 PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSK--KLTEGERNLLTQIFRFFVQAD-V 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y + P Q +L AF E +H AY ++++++G+ E E + A+ + +
Sbjct: 69 EVNNCYMKHYSRVFKPTEVQMML-AAFSNIETVHISAYSHLLDTIGMPEAE-YEAFLKYE 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++ K +++ + + + K+L VF EG+ + F ++ R
Sbjct: 127 QMKTKFDYM------------QEWGVETKADIAKTLAVFGGFTEGVQLFASFAILMNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + RDE++H + L T ENP +WT E ++I + I E
Sbjct: 175 FNKMKGMGQIVTWSARDETLHTVSAMKLFRTFVDENPEIWTEELRRDIYKACETIIHHED 234
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G I GL+ + K+Y+R+IA+ R+ Q+ ++ I+ E+NP PWM EM++ +
Sbjct: 235 AFIDLAFEMGSIEGLSAQEVKNYIRYIADRRLVQLNLQPIYRTEKNPLPWMDEMLNGIEH 294
Query: 336 SNFFETRVMEYQSGGTL-DWE 355
+NFFE R EY T WE
Sbjct: 295 TNFFENRATEYSKASTRGSWE 315
>gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
rectus RM3267]
gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
rectus RM3267]
Length = 340
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 179/346 (51%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ S E N ++++ NG+ + KY WA + AN W P+E++
Sbjct: 2 NRKRIYNPGSNE--NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTS 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D+ + LT+ E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 GDVRDY--AYSLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ + +R+K++++ + L D
Sbjct: 118 EEANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEEL-------AGEVTD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 EKLLLAMVA-NQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T+E +I +F +A ELE + + I+G + Y+R++ +
Sbjct: 230 NSVRTERPDLFTSEMEAKIYDMFKRAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQ 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ IG+K+ + R+P W+ + ++SNFFE +V Y G
Sbjct: 290 RLVAIGLKRRYD-ARHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334
>gi|448937059|gb|AGE60602.1| ribonucleotide-diphosphate reductase subunit beta [Pelagibacter
phage HTVC019P]
Length = 316
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 150/312 (48%), Gaps = 16/312 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+ Y HW+P E+ + D+ W L+ EE+ L+ + L FF+ D
Sbjct: 12 PFDYEWAFQSYDMQQKMHWLPSEVPLHEDVRDWNER--LSAEEKNLIGQILKFFTQGDVD 69
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A + +PE R L A EA H H+Y + +++GL + E + A+ E K +
Sbjct: 70 IAQAYLDKYIPQFKSPEIRMMLSAIASSEANHAHSYSLLNDTIGLPDKE-YKAFQEYKEM 128
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK E+L T K + L + + F+ EGL + FV +L R
Sbjct: 129 SDKHEYLF------------TSKGKGLEGLAREIACFSAFGEGLQLFASFVMLLNFQRYG 176
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
+M G ++ + +RDE+ H I L + I ENPN+WT +F I Q ++LE +
Sbjct: 177 RMKGMCQIVTWSIRDETHHVESMIKLFHQIIKENPNIWTEKFKASIYQTARDMVDLEDKF 236
Query: 279 AEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ GI GL K Y+R+IA+ R+ Q+ +K + + NP W+ +++ + +N
Sbjct: 237 IDLAFSMGGIRGLKADEVKEYIRYIADRRLLQLSLKPNYGVKENPLAWLDWVLNGVEHAN 296
Query: 338 FFETRVMEYQSG 349
FFE R EY G
Sbjct: 297 FFENRATEYNKG 308
>gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
Length = 342
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 180/337 (53%), Gaps = 19/337 (5%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLS-SCANHWMPQEINMQRDIELWKNPIGLTEEER 82
++II G+ T++ +L KY WA+D Y + N W+P+EI+M D + ++ L+ E+
Sbjct: 18 RRIIKGNPTNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQYER--VLSAHEK 75
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL- 141
R + L F DS N ++ R +TAPE + Q F+EA+H+++YQ+I+ES+
Sbjct: 76 RAYEMVLSFLIALDSYQVN-MLKEFARFLTAPELTMAITAQEFQEALHSYSYQFILESVV 134
Query: 142 -GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA-CIM 199
+ EI+N + E K + +++ V+ DL ++++ LK+ VF ++
Sbjct: 135 DPVKADEIYNYWREDKVLMERNR-------VIADLYNDFVRKQDEETFLKA--VFGNYVL 185
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
E L+FY GF LGRQ KM+ + + +YI RDE H + ++I T+K ENP L+T E
Sbjct: 186 ESLYFYSGFAFFYTLGRQGKMLSTVQQIKYINRDELTHVSLFRNIILTLKKENPELFTPE 245
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-Y 318
K +++ F A E + + ILG+N + Y++++AN R+ QIG + +FP
Sbjct: 246 MEKWVKEFFRYAASEEIKWGQYVTRNQILGINDQLIDRYIKYLANLRLTQIGYEPVFPDV 305
Query: 319 ERNPFPWMSEMIHI-KKESNFFETRVMEYQSGGTLDW 354
NP W+ I +++FF+ + Y L W
Sbjct: 306 TENPMKWIDTFRTINDTKTDFFQAKPQTYAKRSELKW 342
>gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis sp.
HTCC2633]
gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis sp.
HTCC2633]
Length = 348
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 160/323 (49%), Gaps = 28/323 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D + W LT++ER L+ + FF+ +D
Sbjct: 20 PFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWATK--LTDKERNLLTQIFRFFTQSDVE 77
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N + E R L + E IH AY ++E++G+ + E F+A+ E + +
Sbjct: 78 VGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPDTE-FSAFMEYEEM 136
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
K ++L F + D+ +L S+ VF EGL + F ++ R N
Sbjct: 137 AAKHDYLGKF------------GCETDRDILTSMAVFGGFTEGLQLFASFAMLMNFPRFN 184
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT------TEFCKEIEQLFLKAI 272
KM G ++ + +RDES+HC + L +T E L + CK + L K I
Sbjct: 185 KMKGMGQIVSWSVRDESLHCEGMMKLFHTFAEETGALTKGVKDDIADCCKTVVSLEDKFI 244
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
EL + E + G+ + K+Y+R+IA+ RMKQ+ + I+ E +P PW++E+++
Sbjct: 245 ELAFEAGE------VEGMTPEDIKNYIRYIADWRMKQLKLPTIYGVEEHPIPWLTEILNG 298
Query: 333 KKESNFFETRVMEYQSGGTL-DW 354
+ +NFFE R EY G T DW
Sbjct: 299 VEHANFFEARATEYSKGATQGDW 321
>gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula
bermudensis HTCC2503]
gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula
bermudensis HTCC2503]
Length = 340
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 158/319 (49%), Gaps = 27/319 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D + W N LT++ER L+ + FF+ +D
Sbjct: 20 PFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWANK--LTDKERNLLTQIFRFFTQSDVE 77
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N + E R L + E IH AY ++E++G+ E+E F+A+ + +++
Sbjct: 78 VGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYEAM 136
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
K ++L F +N++ +L S+ VF EGL + F ++ R N
Sbjct: 137 AAKHDYLGRF------------GVENERDILTSMAVFGGFTEGLQLFASFAMLMNFPRFN 184
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT------EFCKEIEQLFLKAI 272
KM G ++ + +RDES+HC + L + E L + CK + L K I
Sbjct: 185 KMKGMGQIVTWSIRDESLHCEGMVRLFHEFARETGALTPAVADDIVDCCKTVVDLEDKFI 244
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
EL + E + G+ K+Y+R IA+ R+ Q+G+ +F + +P PW+ E+++
Sbjct: 245 ELAFEAGE------VEGMTPDDIKAYIRHIADWRLSQLGLPPVFAADNHPLPWLREILNG 298
Query: 333 KKESNFFETRVMEYQSGGT 351
+ +NFFE R EY G T
Sbjct: 299 VEHANFFEARATEYSKGAT 317
>gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia
profundicola AmH]
gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia
profundicola AmH]
Length = 346
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 170/329 (51%), Gaps = 12/329 (3%)
Query: 26 QIINGHTD-VNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
IING T+ + L Y WA++ + AN W P+E+++ D ++ L E+R+
Sbjct: 20 SIINGCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRM 76
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144
+ L DS+ NN ITAPE ++RQA+EEA+H+ +Y +V+S+ L+
Sbjct: 77 YDKALSQLIFMDSIQTNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLN 136
Query: 145 ELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFF 204
EI+ + ++R K+EF+ +V + K N ++ K+ +IV +EG++F
Sbjct: 137 TDEIYEMWRVDANLRKKNEFIG---NVYEEWGTKALNGDDEAKIY--MIVANQCLEGIYF 191
Query: 205 YVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264
Y GF L R KM+GS+++ ++I RDE H ++ IK E P+L+T E K I
Sbjct: 192 YNGFASFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIKNI 251
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE--RNP 322
+ + A ELE + ILG++ + + +++AN R + +G+ +FP +NP
Sbjct: 252 KDMLYAAYELERDWGWYITNDEILGMSKELIDRFTQYLANKRAQAMGLDLLFPEVGLKNP 311
Query: 323 FPWMSEMIHI-KKESNFFETRVMEYQSGG 350
W ++++NFFE V+ Y G
Sbjct: 312 ISWFDGFSSFNEQKTNFFEGNVVNYSKGS 340
>gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
ATCC 15264]
gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
ATCC 15264]
Length = 348
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 157/314 (50%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D + W L ++ER L+ + FF+ +D
Sbjct: 23 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWA--ANLNDKERNLLTQIFRFFTQSDIE 80
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A+N + R E + L A E IH AY ++E++G+ E E F A+ E +++
Sbjct: 81 VADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 139
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
RDK +F+ +T + + ++L +F EGL + F ++ RQN
Sbjct: 140 RDKHDFM------------QTFGVDTEADIARTLAMFGGFTEGLQLFASFAMLMNFPRQN 187
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC+ I L + E + T +I Q + LE +
Sbjct: 188 KMKGMGQIVSWSVRDESLHCDGIIKLYHAFNKET-GVVTKAVADDIVQCCETVVGLEDKF 246
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I G+ + K Y+RFIA+ R++Q+ + +++ + NP PW+ ++ + +N
Sbjct: 247 IDLAFEAGEINGMTPEDIKQYIRFIADWRLRQLKLPELYGVKENPLPWLQSLLSGVEHAN 306
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 307 FFEARATEYSKAAT 320
>gi|357013302|ref|ZP_09078301.1| NrdB [Paenibacillus elgii B69]
Length = 345
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 184/336 (54%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+++I G+T ++ +L KY+WA Y + N W+P+EI + +D + +K L+ ER+
Sbjct: 20 RRMIGGNTTNLIELNNVKYDWATKMYRTMMNNFWIPEEIPLAQDAKDYK---FLSPVERQ 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ + F DSL N+ +ITAPE L Q F+EA+H+ +Y YI++S+
Sbjct: 77 SYDKIISFLIFLDSLQTANLP-NINEYITAPEVNLCLTVQTFQEAVHSQSYSYILDSVCS 135
Query: 144 DEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
E+ +I+N + E K + ++ F+ TDL + T + + L+++++ I+EG
Sbjct: 136 AEVRDDIYNQWREDKHLLRRNRFI-------TDLYERFIETPSTENLMRTIMA-NYILEG 187
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF ALGRQ KM+G+ +YI RDE H ++ I+ ENP L+T E
Sbjct: 188 IYFYSGFSFFYALGRQGKMLGTVSEIKYIQRDELTHLALFQNIFREIRKENPELFTDELI 247
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+++ Q+ A++ E + + I GL+ Y+++++N R++++G++ ++P
Sbjct: 248 EDLRQMMKTAVQHEIEWGQYITNNNIHGLSNDIIDQYIKYLSNERLRKLGLEILYPEVVE 307
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
+P W+ ++ +++FFE +V Y L+W+
Sbjct: 308 HPMKWVETFSNMNSMKTDFFEQKVTNYSKSSNLNWD 343
>gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
botulinum E3 str. Alaska E43]
gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum E3 str. Alaska E43]
gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 344
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 183/348 (52%), Gaps = 14/348 (4%)
Query: 8 KKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
KKK L N F + K++ING+T ++N KY WA D Y N W+P+EIN+ +
Sbjct: 4 KKKPL-FNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQ 62
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D++ +K L EER + L F DS+ N+ +ITA E L Q+F+
Sbjct: 63 DLKDYKK---LLPEERTAYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQ 118
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+ +Y Y+++S+ E +EI DE L+ + DL + N N+
Sbjct: 119 EAVHSQSYSYMLDSICSPE-----ERNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEY 173
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
L+K+L+ I+EG++FY GF+ L R KM GS++ +YI RDE+ H ++I
Sbjct: 174 NLIKTLMA-NYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIK 232
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
++ ENP +TT+ E++++ +E E + + I G+N K + Y++++ N R
Sbjct: 233 ELQSENPESFTTDLKNELKEMMRIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKR 292
Query: 307 MKQIGIKQIFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
+K+IG+ +F +E NP W+ + + +++FFE + Y TL
Sbjct: 293 LKEIGLGMLFEGFEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTL 340
>gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
centrale str. Israel]
gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
centrale str. Israel]
Length = 332
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 164/318 (51%), Gaps = 21/318 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+E+E+ L+ + FF+ AD +
Sbjct: 20 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 76
Query: 99 AANNIVLGTYRHITAPE--CRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHE 154
NN + Y +I P C ++ AF E +H AY Y+++++G+ E+E + A+ +
Sbjct: 77 EVNNCYMKHYSNIFKPTEIC---MMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLK 132
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
+ ++ K +++ +F+ + + + K+L VF EGL + F +L
Sbjct: 133 FEVMKKKYDYM---------QRFEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNF 183
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R KM G ++ + RDE++H I L NT EN +W E+ + L
Sbjct: 184 QRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDANLRAELYGACRVIVSL 243
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + GL+ K Y+R+IAN R+KQ+ ++ I+ NP PW+ E+++
Sbjct: 244 EDEFIDLAFALGDVEGLSASEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNGV 303
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE RV EY T
Sbjct: 304 EHTNFFENRVTEYSRAAT 321
>gi|403746429|ref|ZP_10954962.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus hesperidum
URH17-3-68]
gi|403120760|gb|EJY55114.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus hesperidum
URH17-3-68]
Length = 345
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 174/336 (51%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+T ++ +L KY+WA+ Y + N W+P+EI + D + L+ +E+R
Sbjct: 20 RRIIGGNTTNMIELNNIKYDWAYKLYRAMMNNFWIPEEIALADDARQYD---ALSADEQR 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-- 141
+ L F DSL +N+ +ITAPE L AF+EA+H+ +Y YI++S+
Sbjct: 77 SYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYILDSVVN 135
Query: 142 GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
I+N + E + + +++F+ TDL + +D+ LLK+ +V I+EG
Sbjct: 136 AATRDAIYNEWREDEHLLRRNQFI-------TDLFEQFIADPSDRNLLKT-VVANYILEG 187
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF LGRQ KM+G+ ++I RDE H +L + I EN L T E
Sbjct: 188 VYFYAGFSFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIIRENKELLTPELE 247
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+E Q+ A++ E + + I GL Y++++AN R+ + + ++P
Sbjct: 248 QEFLQMMRTAVDHEVAWGQYVTGGKIAGLTDVLIDQYIKYLANIRLLSLNLPILYPEITE 307
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
+P PW+ + +++FFE RV Y G L+W+
Sbjct: 308 HPMPWLDSYASMNSMKTDFFEQRVTSYTKAGNLNWD 343
>gi|427412825|ref|ZP_18903017.1| hypothetical protein HMPREF9282_00424 [Veillonella ratti
ACS-216-V-Col6b]
gi|425715641|gb|EKU78627.1| hypothetical protein HMPREF9282_00424 [Veillonella ratti
ACS-216-V-Col6b]
Length = 342
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 179/334 (53%), Gaps = 13/334 (3%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ DI+ + P LT+ ERR
Sbjct: 16 ESMIGGNTTNLREWNRIKYDWATTMYRTMLNNFWIPEEISLNEDIKQF--PF-LTDSERR 72
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 73 AFDKIISFLNFLDSIQSENLP-NLSRYITAAEVASLLNIQAFQEEIHAQSYSYILDTVT- 130
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ + Y E ++ DE L+ + D+ + + ++ L+++++ I+EG++
Sbjct: 131 NPITRDRIYDEWRT----DEHLLARNRFIADIYQRFSDDPSEHNLIRTIMA-NYILEGIY 185
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L RQ KM +S +++YI RDE H ++I +++E P L+T E E
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRVERPELFTPELEAE 245
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ + + E E + + ILG+N + Y++++AN R++ IG+K ++P + NP
Sbjct: 246 LTDMLRQGTENEITWGQYITDDKILGINNVLIERYIKYLANIRLEAIGLKHLYPDIKENP 305
Query: 323 FPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
W+ ++ +++FFE +V Y D++
Sbjct: 306 MAWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
fetus subsp. fetus 82-40]
gi|424819955|ref|ZP_18244993.1| Ribonucleotide-diphosphate reductase subunit beta [Campylobacter
fetus subsp. venerealis NCTC 10354]
gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
fetus subsp. fetus 82-40]
gi|342326734|gb|EGU23218.1| Ribonucleotide-diphosphate reductase subunit beta [Campylobacter
fetus subsp. venerealis NCTC 10354]
Length = 340
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 179/346 (51%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+KK +S E +N ++++ G+ + KY WA + AN W P+E++
Sbjct: 2 NRKKIYNPSSNETLN--DRKVFGGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D+ + LT E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 DDVRDY--ACNLTTAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ +R K++++ + L D
Sbjct: 118 EEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEEL-------AGEVTD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 EKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T+E +I ++F KA +LE + + I+G + Y+ ++ +
Sbjct: 230 NSVRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEEYIHYLVDD 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ IG+K+++ ++P W+ + ++SNFFE++V Y G
Sbjct: 290 RLTSIGLKKLYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS 334
>gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. St. Maries]
gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. Mississippi]
gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. Puerto Rico]
gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. Virginia]
gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale
str. St. Maries]
Length = 324
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 165/318 (51%), Gaps = 21/318 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+E+E+ L+ + FF+ AD +
Sbjct: 12 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPE--CRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHE 154
NN + Y +I P C ++ AF E +H AY Y+++++G+ E+E + A+ +
Sbjct: 69 EVNNCYMKHYSNIFKPTEIC---MMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLK 124
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
+ ++ K +++ +F+ + + + K+L VF EGL + F +L
Sbjct: 125 FEVMKKKYDYM---------QRFEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNF 175
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R KM G ++ + RDE++H I L NT EN +W +E+ + L
Sbjct: 176 QRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVSL 235
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + GL+ K Y+R+IAN R+KQ+ ++ I+ NP PW+ E+++
Sbjct: 236 EDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNGV 295
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE RV EY T
Sbjct: 296 EHTNFFENRVTEYSRAAT 313
>gi|410728007|ref|ZP_11366200.1| ribonucleotide reductase, beta subunit [Clostridium sp. Maddingley
MBC34-26]
gi|410597567|gb|EKQ52178.1| ribonucleotide reductase, beta subunit [Clostridium sp. Maddingley
MBC34-26]
Length = 344
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 174/331 (52%), Gaps = 13/331 (3%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++ING+T ++N KY W D Y N W+P+EIN+ +D++ ++N L +EER
Sbjct: 20 KRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDLKDYQN---LLDEERN 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DS+ N+ +ITA E L Q+F+EA+H+ +Y Y+++S+
Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAVHSQSYSYMLDSICS 135
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +EI DE L+ + DL + N + LLK+L+ I+EG++
Sbjct: 136 PE-----KRNEILYQWKDDEVLLNRNKFIGDLYNEFINNPTEHNLLKTLMA-NYILEGIY 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ L R KM GS++ +YI RDE+ H ++I ++ ENP L+T E E
Sbjct: 190 FYSGFMFFYNLERNGKMAGSAQEIRYINRDENTHLWLFRNIIKELQNENPELFTKEINNE 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ ++ +E E + + I G+N K + Y++++ N R+++I ++ +F + NP
Sbjct: 250 LREMMKTGVEQEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLREISLEPLFSEHNENP 309
Query: 323 FPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
W+ + + +++FFE R Y TL
Sbjct: 310 ASWVDILSNANSVKTDFFEARSTAYAKATTL 340
>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Candidatus Liberibacter asiaticus str. psy62]
gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta, partial
[Candidatus Liberibacter asiaticus str. psy62]
gi|254039813|gb|ACT56609.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040683|gb|ACT57479.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 125
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 92/125 (73%)
Query: 231 LRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGL 290
+RDES+H NFGID+IN IK+ENP+LWT EF ++ + +A LE YA +TMPKG +GL
Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
Query: 291 NVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGG 350
N + + Y++FIAN R QIG++ +F Y NPFPWMSE+I +KKE NFFETRV EYQ G
Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
Query: 351 TLDWE 355
L W+
Sbjct: 121 ELKWD 125
>gi|222475064|ref|YP_002563479.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. Florida]
gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
marginale str. Florida]
Length = 343
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 165/318 (51%), Gaps = 21/318 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+E+E+ L+ + FF+ AD +
Sbjct: 31 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 87
Query: 99 AANNIVLGTYRHITAPE--CRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHE 154
NN + Y +I P C ++ AF E +H AY Y+++++G+ E+E + A+ +
Sbjct: 88 EVNNCYMKHYSNIFKPTEIC---MMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLK 143
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
+ ++ K +++ +F+ + + + K+L VF EGL + F +L
Sbjct: 144 FEVMKKKYDYM---------QRFEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNF 194
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R KM G ++ + RDE++H I L NT EN +W +E+ + L
Sbjct: 195 QRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVSL 254
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + GL+ K Y+R+IAN R+KQ+ ++ I+ NP PW+ E+++
Sbjct: 255 EDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNGV 314
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE RV EY T
Sbjct: 315 EHTNFFENRVTEYSRAAT 332
>gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris
MCS10]
gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10]
Length = 345
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 163/323 (50%), Gaps = 28/323 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D + W L + ER L+ + FF+ +D
Sbjct: 20 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWATK--LNDGERNLLTQIFRFFTQSDVE 77
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L + E IH AY ++E++G+ + E F+A+ E +++
Sbjct: 78 VNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQAM 136
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +++ F +++ +L+++ +F EGL + F ++ R N
Sbjct: 137 ADKHDYMQRF------------GVEDEADILRTVAMFGAFTEGLQLFASFAMLMNFPRFN 184
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT------TEFCKEIEQLFLKAI 272
KM G ++ + +RDES+HC I L + E L TE C+ + L K I
Sbjct: 185 KMKGMGQIVTWSIRDESLHCEGMIKLFHAFAEETGALTQEVKDDITECCRTVVGLEDKFI 244
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+L + + + G+ K+Y+R+IA+ R+ Q+G+ +I+ + +P PW+SE+++
Sbjct: 245 DLAFEAGD------VEGMTPDDIKTYIRYIADWRLGQLGLPKIYGVKEHPLPWLSEILNG 298
Query: 333 KKESNFFETRVMEYQSGGTL-DW 354
+ +NFFE R EY G T DW
Sbjct: 299 VEHANFFEARATEYSKGATKGDW 321
>gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
botulinum B str. Eklund 17B]
gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum B str. Eklund 17B]
Length = 344
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 182/348 (52%), Gaps = 14/348 (4%)
Query: 8 KKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
KKK L N F + K++ING+T ++N KY WA D Y N W+P+EIN+ +
Sbjct: 4 KKKPL-FNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQ 62
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D++ +K L +ER + L F DS+ N+ +ITA E L Q+F+
Sbjct: 63 DLKDYKK---LLPDERTAYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQ 118
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA+H+ +Y Y+++S+ E +EI DE L+ + DL + N N+
Sbjct: 119 EAVHSQSYSYMLDSICSPE-----ERNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEY 173
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
L+K+L+ I+EG++FY GF+ L R KM GS++ +YI RDE+ H ++I
Sbjct: 174 NLIKTLMA-NYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIK 232
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
++ ENP +T + E+ ++ +E E + + I G+N K + Y++++ N R
Sbjct: 233 ELQSENPESFTADLKNELREMMHIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKR 292
Query: 307 MKQIGIKQIFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
+K+IG++ +F YE NP W+ + + +++FFE + Y TL
Sbjct: 293 LKEIGLEPLFSGYEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTL 340
>gi|295691241|ref|YP_003594934.1| ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
21756]
gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
21756]
Length = 346
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 27/319 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D++ W + L ++ER L+ + FF+ +D
Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDVE 78
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L A E IH AY ++E++G+ E E F+A+ E +++
Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
+DK +++ +T ++ + ++L +F EGL + F ++ R N
Sbjct: 138 KDKHDYM------------QTFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 185
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT------EFCKEIEQLFLKAI 272
KM G ++ + +RDES+HC+ I L + E + + CK + L K I
Sbjct: 186 KMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETGAVTKAVADDIVDCCKHVVGLEDKFI 245
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+L + E I G+ KSY+RFIA+ R++Q+ + +++ + NP PW+ ++
Sbjct: 246 DLAFEAGE------IQGMTPDDIKSYIRFIADWRLRQLQLPEVYGVKENPLPWLQSLLSG 299
Query: 333 KKESNFFETRVMEYQSGGT 351
+ +NFFE R EY T
Sbjct: 300 VEHANFFEARATEYSKAAT 318
>gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
ruminantium str. Welgevonden]
gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
ruminantium str. Welgevonden]
Length = 329
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 168/317 (52%), Gaps = 19/317 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+++E+ L+ + FF+ AD +
Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 73
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y +I P ++ AF E IH AY Y+++++G+ E+E + A+ + +
Sbjct: 74 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQILALG 215
++ K +++ F + KND++ + K+L VF EGL + F +L
Sbjct: 132 VMKKKYDYMQRFEEC----------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 181
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R KM G ++ + +RDE++H I L NT EN +W + KE+ + + LE
Sbjct: 182 RFGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLE 241
Query: 276 YYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ G + GL+ + K Y+R+IAN R+ Q+ ++ I+ +NP W+ E+++ +
Sbjct: 242 DEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVE 301
Query: 335 ESNFFETRVMEYQSGGT 351
+NFFE RV EY T
Sbjct: 302 HTNFFENRVTEYTRAAT 318
>gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
chaffeensis str. Arkansas]
gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia
chaffeensis str. Arkansas]
Length = 324
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 167/317 (52%), Gaps = 19/317 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+E+E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y +I P ++ AF E IH AY Y+++++G+ E+E + A+ + +
Sbjct: 69 EVNNCYMKHYSNIFKP-TEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQILALG 215
++ K +++ F + KND++ + K+L VF EGL + F +L
Sbjct: 127 VMKKKYDYMQRFEEC----------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 176
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R KM G ++ + +RDE++H I L NT EN +W +E+ + + LE
Sbjct: 177 RFGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLE 236
Query: 276 YYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ G + GL+ K K Y+R+IAN R+ Q+ ++ I+ +NP W+ E+++ +
Sbjct: 237 DEFINLAFACGDVEGLSSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVE 296
Query: 335 ESNFFETRVMEYQSGGT 351
+NFFE RV EY T
Sbjct: 297 HTNFFENRVTEYARAAT 313
>gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis
str. Jake]
gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
Length = 324
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 164/316 (51%), Gaps = 17/316 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+E+E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y +I P ++ AF E IH AY Y+++++G+ E+E + A+ + +
Sbjct: 69 EVNNCYMRHYSNIFKP-TEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++ K +++ KF+ + + + K+L VF EGL + F +L R
Sbjct: 127 VMKKKYDYM---------QKFEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
KM G ++ + +RDE++H I L NT EN +W E+ + + LE
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFVQENYEIWDDSLKHELYEACKIIVSLED 237
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ G + GL+ K K Y+R+IAN R+ Q+ ++ I+ +NP W+ E+++ +
Sbjct: 238 EFINLAFACGDVEGLSAKEVKKYIRYIANRRLLQLNLEPIYDANKNPLLWLDEILNGVEH 297
Query: 336 SNFFETRVMEYQSGGT 351
+NFFE RV EY T
Sbjct: 298 TNFFENRVTEYARAAT 313
>gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
ruminantium str. Gardel]
gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
ruminantium str. Gardel]
Length = 329
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 168/317 (52%), Gaps = 19/317 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+++E+ L+ + FF+ AD +
Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 73
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y +I P ++ AF E IH AY Y+++++G+ E+E + A+ + +
Sbjct: 74 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQILALG 215
++ K +++ F + KND++ + K+L VF EGL + F +L
Sbjct: 132 VMKKKYDYMQRFEEC----------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 181
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R KM G ++ + +RDE++H I L NT EN +W + KE+ + + LE
Sbjct: 182 RFGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDGDLKKELYEACSVIVTLE 241
Query: 276 YYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ G + GL+ + K Y+R+IAN R+ Q+ ++ I+ +NP W+ E+++ +
Sbjct: 242 DEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVE 301
Query: 335 ESNFFETRVMEYQSGGT 351
+NFFE RV EY T
Sbjct: 302 HTNFFENRVTEYTRAAT 318
>gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
ruminantium str. Welgevonden]
gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia
ruminantium]
gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia
ruminantium str. Welgevonden]
Length = 324
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 168/317 (52%), Gaps = 19/317 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D +L HW+P+E+ + D++ WK L+++E+ L+ + FF+ AD +
Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
NN + Y +I P ++ AF E IH AY Y+++++G+ E+E + A+ + +
Sbjct: 69 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK-LLKSLIVFACIMEGLFFYVGFVQILALG 215
++ K +++ F + KND++ + K+L VF EGL + F +L
Sbjct: 127 VMKKKYDYMQRFEEC----------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 176
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R KM G ++ + +RDE++H I L NT EN +W + KE+ + + LE
Sbjct: 177 RFGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLE 236
Query: 276 YYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ G + GL+ + K Y+R+IAN R+ Q+ ++ I+ +NP W+ E+++ +
Sbjct: 237 DEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVE 296
Query: 335 ESNFFETRVMEYQSGGT 351
+NFFE RV EY T
Sbjct: 297 HTNFFENRVTEYTRAAT 313
>gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
Length = 350
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 182/337 (54%), Gaps = 17/337 (5%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLS-SCANHWMPQEINMQRDIELWKNPIGLTEEE 81
N++IING+ T++ +L KY WA+D Y + +N W+P+EI + D + ++ L++ E
Sbjct: 25 NRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQYER--VLSDYE 82
Query: 82 RRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL 141
RR + L F DS + ++ R I+APE L Q F+E+IH ++YQ+I+ES+
Sbjct: 83 RRAYELVLSFLIALDSFQVD-MLKDFARMISAPEVEMALTAQEFQESIHAYSYQFILESV 141
Query: 142 --GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
+ EI+N + E + +++++E V+ ++ + +++ +K++I I+
Sbjct: 142 VDPIKADEIYNYWREDEKLKERNE-------VVAEVYNEFIRKPSEENFIKAVIG-NYIL 193
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
E L+FY GF LGRQ KM + + +YI RDE H ++I ++ E P L++ E
Sbjct: 194 ESLYFYSGFAFFYTLGRQGKMTNTVQQIKYINRDELTHVTLFRNMILNLQKEQPELFSPE 253
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-Y 318
K I + F AI+ E + + ILG+N + Y++++ N R+ QIG++ ++P
Sbjct: 254 IKKWIAEYFRYAIDQEIKWGQYVTQDQILGINNQLIDRYIKYLGNLRITQIGLEPLYPEI 313
Query: 319 ERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDW 354
NP W+ + I +++FF+ + Y L W
Sbjct: 314 TENPMKWIDDFRKINNTKTDFFQRKPQTYAKANELKW 350
>gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas
diminuta ATCC 11568]
gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas
diminuta ATCC 11568]
Length = 348
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 154/314 (49%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ M D++ W L + ER L+ + FF+ AD
Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWA--ANLNDGERNLLTQIFRFFTQADIE 81
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L A E IH AY ++E++G+ E E F A+ E +++
Sbjct: 82 VQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
+DK +++ F +D + ++L +F EGL + F ++ RQ+
Sbjct: 141 KDKHDYMGQF------------GVDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPRQS 188
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC I L + E + T +I IE+E +
Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVIEMEDKF 247
Query: 279 AEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G + G+ K+Y+RFIA+ R++Q+ + +++ NP PW+ ++ + +N
Sbjct: 248 IDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLHLPEVYGVTENPLPWLQALLSGVEHAN 307
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 308 FFEARATEYSKAAT 321
>gi|452944408|ref|YP_007500573.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. HO]
gi|452882826|gb|AGG15530.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. HO]
Length = 312
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 165/297 (55%), Gaps = 18/297 (6%)
Query: 49 YLSSCANHWMPQEINMQRDI-ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGT 107
Y + N+W+P+E ++ D E ++ L + ER + +GFFS+A+ NI L
Sbjct: 30 YTKAKNNYWIPEEYDLANDKHEFYEK---LNDIERHYMLYTVGFFSSAEGWVGQNI-LEI 85
Query: 108 YRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIP 167
+ I E R +L Q EE H ++YI++ L L E++ + +K I+ K +F +
Sbjct: 86 SKRIRNTETRMFLGYQLMEEMKHIDTFRYIMDGLDLKPHEVYAMHENVKEIKRKADFEVK 145
Query: 168 FIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELY 227
L + ++ L++ + V+ I+EGLFF+ GFV LA GR+ + + L
Sbjct: 146 RAMALCE-------EPTEENLIEDIFVYYAILEGLFFFSGFVTPLAFGRRGVLKNVAALV 198
Query: 228 QYILRDESMHCNFGIDLINT-IKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKG 286
++IL+DE+ H FGI L+N +K +N N + +F +E+ A+++E YA MP+
Sbjct: 199 RWILKDETRHLAFGIYLLNELLKDKNKNDYKDKFRVLMEE----AVDIETEYARVAMPEK 254
Query: 287 ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRV 343
I+GL+ +T+ SY+R++A+ RM+ +G + I+ ++NP W++ + +NFFE +V
Sbjct: 255 IIGLSFETYTSYVRYLADRRMRSLGFEAIYG-QKNPMKWLTTQTDLPDLTNFFEAKV 310
>gi|429767818|ref|ZP_19300002.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
diminuta 470-4]
gi|429189776|gb|EKY30595.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
diminuta 470-4]
Length = 362
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 154/314 (49%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ M D++ W L + ER L+ + FF+ AD
Sbjct: 38 PFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWA--ANLNDGERNLLTQIFRFFTQADIE 95
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L A E IH AY ++E++G+ + E F A+ E +++
Sbjct: 96 VQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPDSE-FGAFMEYEAM 154
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
+DK +++ F +D + ++L +F EGL + F ++ RQ+
Sbjct: 155 KDKHDYMGQF------------GVDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPRQS 202
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC I L + E + T +I IE+E +
Sbjct: 203 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVIEMEDKF 261
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G + G+ K+Y+RFIA+ R++Q+ + +++ NP PW+ ++ + +N
Sbjct: 262 IDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLNLPEVYGVTENPLPWLQSLLSGVEHAN 321
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 322 FFEARATEYSKAAT 335
>gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum 5521]
gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum 5521]
gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 344
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 175/331 (52%), Gaps = 13/331 (3%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++ING+T ++N KY W D Y N W+P+E+N+ +D++ ++N L +EER
Sbjct: 20 KRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDLKDYQN---LLDEERI 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DS+ N+ +ITA E L Q+F+EA+H+ +Y Y+++S+
Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQSFQEAVHSQSYSYMLDSICS 135
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +EI DE L+ + DL + + ++ LLK+L+ I+EG++
Sbjct: 136 PE-----KRNEILYQWKDDEILLNRNKFIGDLYNEFIDNPTEETLLKTLMA-NYILEGIY 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ L R KM GS++ +YI RDE+ H ++I ++ EN L+T E E
Sbjct: 190 FYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQNENAELFTEEIKNE 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ ++ +E E + + I G+N K + Y++++ N R+K+I ++ +F ++ NP
Sbjct: 250 LREMMKTGVEQEILWGHYVIGDKIQGINKKLIEEYIKYLGNKRLKEINLEPLFEGHDVNP 309
Query: 323 FPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
PW+ + +++FFE R Y TL
Sbjct: 310 APWVDRQSNANSVKTDFFEARSTAYAKAATL 340
>gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
showae RM3277]
gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
showae RM3277]
Length = 340
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 178/346 (51%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ +S E N ++++ NG+ + KY WA + AN W P+E++
Sbjct: 2 NRKRIYNPSSNE--NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D+ + LT+ E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 DDVRDY--AYNLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ + +R+K++++ + L D
Sbjct: 118 EEANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEEL-------AGEVTD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 EKLLLAMVA-NQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T E +I +F +A ELE + + I+G + Y+R++ +
Sbjct: 230 NSVRTERPDLFTPETEAKIYDMFERAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQ 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ IG+K+ + +P W+ + ++SNFFE +V Y G
Sbjct: 290 RLVAIGLKRRYNVP-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334
>gi|197103810|ref|YP_002129187.1| ribonucleotide-diphosphate reductase subunit beta [Phenylobacterium
zucineum HLK1]
gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit
[Phenylobacterium zucineum HLK1]
Length = 350
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 29/320 (9%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+EI + D++ W + L + ER L+ + FF+ +D
Sbjct: 24 PFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWASK--LNDRERNLLTQIFRFFTQSDVE 81
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L + E IH AY ++E++G+ + E F A+ + +++
Sbjct: 82 VNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLDYQAM 140
Query: 159 RDKDEFLIPF-IDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
RDK +++ F +D D+ ++L +F EGL + F ++ R
Sbjct: 141 RDKHDYMQSFGVDTHADI-------------CRTLAMFGGFTEGLQLFASFAMLMNFPRH 187
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT------EFCKEIEQLFLKA 271
NKM G ++ + +RDES+HC I L + E + + CK + L K
Sbjct: 188 NKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAVTQAVADDIVDCCKTVVGLEDKF 247
Query: 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIH 331
I+L + E + G+ K Y+RFIA+ R+KQ+ + Q++ + NP PW+ M+
Sbjct: 248 IDLAFEAGE------VQGMTPDDIKQYIRFIADWRLKQLHLPQVYGIKENPLPWLQSMLS 301
Query: 332 IKKESNFFETRVMEYQSGGT 351
+ +NFFE R EY T
Sbjct: 302 GVEHANFFEARATEYSKAAT 321
>gi|342214839|ref|ZP_08707510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
oral taxon 780 str. F0422]
gi|341590370|gb|EGS33613.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
oral taxon 780 str. F0422]
Length = 342
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 180/341 (52%), Gaps = 13/341 (3%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E ++ + ++ G+T ++ + KY+WA Y + N W+P+EI++ DI+ +
Sbjct: 9 EHGDRGTQSMVGGNTTNLREWNRIKYDWANTLYRTMLNNFWIPEEISLNEDIKQFP---Y 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ERR + + F + DS+ + N+ R+ITA E L QAF+E IH +Y Y
Sbjct: 66 LTDSERRAFDKIISFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSY 124
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I++++ + + Y E ++ DE L+ + D+ + + ++ L+++++
Sbjct: 125 ILDTVT-NPITRDRIYDEWRT----DEHLLARNRFIADIYQRFSDEPSEHNLIRTIMA-N 178
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +++E P L+
Sbjct: 179 YILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRIERPELF 238
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E E+ Q+ + E E + + ILG+N + Y++++AN R IG++ ++
Sbjct: 239 TPELEAELTQMLREGTENEIAWGQYITDDKILGINNTLIERYIKYLANQRADSIGLQPLY 298
Query: 317 P-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
P + NP W+ ++ +++FFE +V Y D++
Sbjct: 299 PEIKENPMAWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
Length = 319
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 164/297 (55%), Gaps = 18/297 (6%)
Query: 49 YLSSCANHWMPQEINMQRDI-ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGT 107
Y + N+W+P+E ++ D E ++ L + ER + +GFFS+A+ NI L
Sbjct: 37 YTKAKNNYWIPEEYDLANDKHEFYEK---LNDIERHYMLHTVGFFSSAEGWVGQNI-LEI 92
Query: 108 YRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIP 167
+ I E R +L Q EE H ++YI++ L L E++ + +K I+ K +F +
Sbjct: 93 SKRIRNTETRMFLGYQLMEEMKHIDTFRYIMDGLDLKPHEVYAMHENVKEIKRKADFEVK 152
Query: 168 FIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELY 227
L + ++ L++ + V+ I+EGLFF+ GFV LA GR+ + + L
Sbjct: 153 RAMALCE-------EPTEENLIEDIFVYYAILEGLFFFSGFVTPLAFGRRGVLKNVAALV 205
Query: 228 QYILRDESMHCNFGIDLINT-IKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKG 286
++IL+DE+ H FGI L+N +K +N N + +F +E+ A+++E YA MP+
Sbjct: 206 RWILKDETRHLAFGIYLLNELLKDKNKNDYKDKFRVLMEE----AVDIETEYARVAMPEK 261
Query: 287 ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRV 343
I+GL+ +T+ SY++++A+ RM+ +G I+ ++NP W++ + +NFFE +V
Sbjct: 262 IIGLSFETYTSYVKYLADRRMRSLGFDAIYG-QKNPMKWLTTQTDLPDLTNFFEAKV 317
>gi|365154479|ref|ZP_09350912.1| hypothetical protein HMPREF1019_01595 [Campylobacter sp. 10_1_50]
gi|363650317|gb|EHL89408.1| hypothetical protein HMPREF1019_01595 [Campylobacter sp. 10_1_50]
Length = 340
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 176/346 (50%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ +S E N ++++ NG+ + KY WA + AN W P+E++
Sbjct: 2 NRKRIYNPSSNE--NLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D+ + LTE E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 DDVRDY--AYNLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ +R+K++++ + L D
Sbjct: 118 EEANHSKSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEEL-------AGEVTD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 EKLLLAMVA-NQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+TTE +I +F KA LE + + I+G + Y+ ++ +
Sbjct: 230 NSVRKERPDLFTTETEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQ 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ IG+K+ + +P W+ + ++SNFFE +V Y G
Sbjct: 290 RLVAIGLKRKYNVA-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334
>gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis
T2Bo]
gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative
[Babesia bovis]
Length = 339
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 171/351 (48%), Gaps = 38/351 (10%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L+++ K L+ F + N+ N L P KY W+ Y + A+ W +EI++
Sbjct: 10 LSSRMKALQSEEFILVEDPNR---------NGLYPIKYPDFWEWYKKAQASFWTSEEIDL 60
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
D++ W LTE E +K L FF+ +D + N+ L + + PE + + Q
Sbjct: 61 SSDLKDWGT---LTEGEHHFIKNVLAFFAASDGIVLENLALRFLKDVKLPEAKFFYCFQI 117
Query: 125 FEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181
E IH+ Y ++E DE E +F A I ++RDK + ++
Sbjct: 118 TVENIHSETYSLLIEQYIRDEAEKDRLFRAIETIDAVRDKAIWAAKWM------------ 165
Query: 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
ND+K IV +EG+FF F I L ++ M G + + I RDE +H +FG
Sbjct: 166 --NDEKSFAERIVAYAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELIARDEGLHADFG 223
Query: 242 IDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRF 301
+ + +K + P + ++Q+ +A+ +E + D++P ++G+N Y+ F
Sbjct: 224 CFIYSKLKHKLP-------AECVQQIIKEAVAVERVFVCDSLPTDLIGMNSMLMAQYIEF 276
Query: 302 IANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
+A+ ++ +G+ ++ +NPF WM E+I ++ ++NFFE RV EYQ G L
Sbjct: 277 VADRLLQALGVPPVYK-TKNPFEWM-ELISVQGKTNFFEKRVGEYQKSGIL 325
>gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
sp. BAL3]
gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
sp. BAL3]
Length = 349
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 154/314 (49%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D++ W + L + ER L+ + FF+ AD
Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAST--LNDNERNLLTQIFRFFTQADIE 81
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L E IH AY ++E++G+ E E F A+ E +++
Sbjct: 82 VQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
RDK +++ F +D + ++L +F EG+ + F ++ RQN
Sbjct: 141 RDKHDYMGQF------------GVDSDADICRTLAMFGGFSEGVQLFASFAMLMNFPRQN 188
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC I L + E + T +I + +E +
Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVNMEDRF 247
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G + G+ + K Y+RFIA+ R++Q+ + +++ + NP PW+ ++ + +N
Sbjct: 248 IDLAFEMGSVQGMTPEDIKQYIRFIADWRLRQLKLPEVYGVKENPLPWLQSLLSGVEHAN 307
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 308 FFEARATEYSKAAT 321
>gi|378821880|ref|ZP_09844728.1| ribonucleoside-diphosphate reductase, beta subunit [Sutterella
parvirubra YIT 11816]
gi|378599302|gb|EHY32342.1| ribonucleoside-diphosphate reductase, beta subunit [Sutterella
parvirubra YIT 11816]
Length = 335
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 163/324 (50%), Gaps = 29/324 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD-- 96
PF Y WA++ +L S HW+ E+ M D + + LT++ER + + L FF+ D
Sbjct: 27 PFAYPWAYEAFLQSEQMHWLWTEVPMMEDCKDYVQK--LTDDERDFLTKILRFFTQGDID 84
Query: 97 -SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155
S A N L +R PE R L A EA+H AY +++E+LGL E I+N + +
Sbjct: 85 VSGAYVNTYLPVFRQ---PEVRMMLSSFAAREAVHIAAYSHLIETLGLPE-SIYNEFMQY 140
Query: 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK--LLKSLIVFACIMEGLFFYVGFVQILA 213
+++ K E+ N +D+K L + + F+ EG+ + FV +L
Sbjct: 141 EAMAAKHEYF---------------NEVSDEKTSLAEQIAAFSAFTEGMQLFSSFVMLLN 185
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
R M G ++ + + DE++H I + ENP LWT E ++I + + +E
Sbjct: 186 FTRNGAMKGMGQIIAWSIADETLHTESMIRIFREYIAENPELWTDELKRKIYTIAEQMVE 245
Query: 274 LEYYYAEDTMP-KGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
LE + + + L+ + + Y+R+IA+ R+ +G+K IF ++NP PW+ M+ +
Sbjct: 246 LEDKFIDLAFGVSDMRRLSKEEVRDYIRYIADRRLTALGMKAIFGVKKNPLPWVDAMLGV 305
Query: 333 KKESNFFETRVMEYQSGG-TLDWE 355
SNFFETRV +Y G T W+
Sbjct: 306 -THSNFFETRVTDYAKGSLTGSWD 328
>gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
excrementihominis YIT 11859]
gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
excrementihominis YIT 11859]
Length = 327
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 156/321 (48%), Gaps = 23/321 (7%)
Query: 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94
N PF Y WA+D +++S HW+ E+ M DI+ WKN LT+ ER + + FF+
Sbjct: 10 NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWKNV--LTDGERDFLTKVFRFFTQ 67
Query: 95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D ++ V PE R L A EA+H AY +++E++G+ E ++N + +
Sbjct: 68 GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPET-VYNEFLQ 126
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
+++ +K +F F + + + F+ EG+ + FV +L
Sbjct: 127 YEAMAEKHDF------------FHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLLNF 174
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R M G ++ + + DE++H I L +ENP LWT K I + K IEL
Sbjct: 175 TRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMIEL 234
Query: 275 EYYYAE-----DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
E + + + M K L+ K+Y+R+I + R+ +G+K+IF NP PW+ M
Sbjct: 235 EDAFIDLAFGVNDMSKQ--NLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 292
Query: 330 IHIKKESNFFETRVMEYQSGG 350
+ + +NFFE RV++Y G
Sbjct: 293 LGV-THTNFFENRVVDYAKGA 312
>gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
bacterium 1_1_47]
gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
bacterium 1_1_47]
Length = 328
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 156/321 (48%), Gaps = 23/321 (7%)
Query: 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94
N PF Y WA+D +++S HW+ E+ M DI+ WKN LT+ ER + + FF+
Sbjct: 11 NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWKNV--LTDGERDFLTKVFRFFTQ 68
Query: 95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D ++ V PE R L A EA+H AY +++E++G+ E ++N + +
Sbjct: 69 GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPE-TVYNEFLQ 127
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
+++ +K +F F + + + F+ EG+ + FV +L
Sbjct: 128 YEAMAEKHDF------------FHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLLNF 175
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R M G ++ + + DE++H I L +ENP LWT K I + K IEL
Sbjct: 176 TRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMIEL 235
Query: 275 EYYYAE-----DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
E + + + M K L+ K+Y+R+I + R+ +G+K+IF NP PW+ M
Sbjct: 236 EDAFIDLAFGVNDMSKQ--NLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 293
Query: 330 IHIKKESNFFETRVMEYQSGG 350
+ + +NFFE RV++Y G
Sbjct: 294 LGV-THTNFFENRVVDYAKGA 313
>gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
3_1_44]
gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
3_1_44]
Length = 342
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 178/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ D++ + LT+ ERR
Sbjct: 16 QSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---YLTDYERR 72
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG- 142
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 73 AFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTN 131
Query: 143 -LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +I++ + K++ +++ F+ D + + ++ L+ ++I I+EG
Sbjct: 132 PITRDKIYDEWRTDKTLLERNRFI-------ADAYQRFSDDPSEANLIHTIIA-NYILEG 183
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+L+T E
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELE 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+I + + E E + + ILGLN + Y++++AN R++ IG+ ++P +
Sbjct: 244 AKITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKD 303
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
NP W+ ++ +++FFE +V Y D++
Sbjct: 304 NPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|383641407|ref|ZP_09953813.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas
elodea ATCC 31461]
Length = 350
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 161/315 (51%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYEYWKRQQQVHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F +D+ + K+L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLSTF------------GVDSDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L +T E N T +I + K + +E
Sbjct: 176 NKMKGMGQIVTWSIRDESLHCEGIIKLFHTFCKER-NCMTPSVRDDILDMCQKTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+RFIA+ R+ Q+G+K I+ + +P PW++ +++ + +
Sbjct: 235 FIDLVFEMGPVNGMTPKDIKKYVRFIADWRLGQLGLKPIYMIDEHPLPWLAPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY T
Sbjct: 295 NFFETRATEYSKAAT 309
>gi|399066936|ref|ZP_10748647.1| ribonucleotide reductase, beta subunit [Novosphingobium sp. AP12]
gi|398027640|gb|EJL21186.1| ribonucleotide reductase, beta subunit [Novosphingobium sp. AP12]
Length = 351
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 20/319 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D W I +E ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDFWKIQQQVHWLPEEVPLGEDCRDWAQNI--SEHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E + A+ E
Sbjct: 69 EVQDCYHEKYSRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPE-STYGAFLEYSE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F ND+ + ++L +F EG+ + F ++ R
Sbjct: 128 LKDKHDYLQKF------------GVDNDEDIARTLAMFGGFTEGVQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L +T E L T +I I LE
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGIIQLFHTFVRERDCL-TKAVKDDIADQCQTTIRLEDN 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ RM Q+G+K I+ E +P PW+ +++ + +
Sbjct: 235 FIDLAFELGPVPGMTPKDIKRYIRYIADWRMGQLGLKPIYLIEDHPLPWLQPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DW 354
NFFETR EY G T DW
Sbjct: 295 NFFETRATEYSKGATRGDW 313
>gi|417000327|ref|ZP_11940543.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
parvula ACS-068-V-Sch12]
gi|333976029|gb|EGL76901.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
parvula ACS-068-V-Sch12]
Length = 342
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 181/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E ++ + +I G+T ++ + KY+WA Y + N W+P+EI++ D++ +
Sbjct: 9 EHGDRGTQSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---Y 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ERR + + F + DS+ + N+ R+ITA E L QAF+E IH +Y Y
Sbjct: 66 LTDYERRAFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + K++ +++ F+ D + + ++ L+ ++I
Sbjct: 125 ILDTVTNPITRDKIYDEWRTDKTLLERNRFI-------ADAYQRFSDDPSEANLIHTIIA 177
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+
Sbjct: 178 -NYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPD 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
L+T E +I + + E E + + ILGLN + Y++++AN R++ IG+
Sbjct: 237 LFTPELEAKITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPH 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P + NP W+ ++ +++FFE +V Y D++
Sbjct: 297 LYPEIKENPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
gi|352685421|ref|YP_004897406.1| ribonucleoside-diphosphate reductase [Acidaminococcus intestini
RyC-MR95]
gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
gi|350280076|gb|AEQ23266.1| ribonucleoside-diphosphate reductase [Acidaminococcus intestini
RyC-MR95]
Length = 342
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 182/352 (51%), Gaps = 19/352 (5%)
Query: 9 KKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRD 67
KK L N E + + +I G+T ++ + KY+WA Y + N W+P+EI++ D
Sbjct: 2 KKKLIFN--EHGQRGTQAMIGGNTTNLREWNRIKYDWANTLYRTMLNNFWIPEEISLNED 59
Query: 68 IELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEE 127
I+ + LT+ ERR + + F + DS+ + N+ R+ITAPE L QAF+E
Sbjct: 60 IKQFPY---LTDSERRAFDKIISFLNFLDSVQSENLP-NISRYITAPEVASLLNIQAFQE 115
Query: 128 AIHTHAYQYIVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
IH +Y YI++++ + +I++ + ++ +++ F+ D + + N+
Sbjct: 116 EIHAQSYSYILDTVTNPITRDKIYDEWRTDSTLLERNRFI-------ADAYQRFSDDPNE 168
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
L + IV I+EG++FY GF L RQ KM +S +++YI RDE H +++
Sbjct: 169 GNFLHT-IVANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLILFQNIL 227
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
++ E P+L+T E I + + E E + + ILGLN + Y++++AN
Sbjct: 228 RELRHERPDLFTKEQDAHIADMIRQGAENEIKWGQYITDDKILGLNNGLIEKYIKYLANI 287
Query: 306 RMKQIGIKQIFP-YERNPFPWMSEMIHIK-KESNFFETRVMEYQSGGTLDWE 355
R++ IG+ ++P +NP W+ ++ +++FFE +V Y D++
Sbjct: 288 RLEAIGLAPLYPEISQNPMEWIESFSNLNGTKTDFFEAKVTNYTKAAAFDFD 339
>gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
novyi NT]
gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
novyi NT]
Length = 342
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 179/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E N+ + +ING+T ++ + KYNWA + Y + N W+P+EI++ D++ +
Sbjct: 9 ENGNRGTESMINGNTTNLREWNRIKYNWANELYRTMLNNFWIPEEISLNEDVKQFP---Y 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITAPE L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAPEVSSLLNVQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E K++ ++++F+ +++ N + I+
Sbjct: 125 ILDTVTNPITRDKIYDQWREDKNLLERNKFIAGI--------YQSFNENPTTENFLRTIM 176
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K ENP+
Sbjct: 177 ANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENPD 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T +E + +E E + + ILG+N + Y+++++N R+ IG++
Sbjct: 237 IFTESIMEEFRMMMKMGVEHEIKWGQYVTNNEILGINDNLIEKYIKYLSNLRLNAIGLEV 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P +P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEITEHPMEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339
>gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like,
partial [Xenopus (Silurana) tropicalis]
Length = 120
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 77/84 (91%)
Query: 19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
R+N +K+IING TDVNQLVPFKY WAW++YL++CANHWMPQE+NM RDI LWK+P GLT
Sbjct: 37 RVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 96
Query: 79 EEERRLVKRNLGFFSTADSLAANN 102
E+ERR+V+RNLGFF+TADSLAANN
Sbjct: 97 EDERRIVRRNLGFFTTADSLAANN 120
>gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
parvula ATCC 17745]
gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
parvula ATCC 17745]
Length = 342
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 178/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ D++ + LT+ ERR
Sbjct: 16 QSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---YLTDYERR 72
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG- 142
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 73 AFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTN 131
Query: 143 -LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +I++ + K++ +++ F+ D + + ++ L+ ++I I+EG
Sbjct: 132 PITRDKIYDEWRTDKTLLERNRFI-------ADAYQRFSDDPSEANLIHTIIA-NYILEG 183
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+L+T E
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELE 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+I + + E E + + ILGLN + Y++++AN R++ IG+ ++P +
Sbjct: 244 AKITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKE 303
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
NP W+ ++ +++FFE +V Y D++
Sbjct: 304 NPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
6_1_27]
gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
6_1_27]
Length = 342
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 178/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ D++ + LT+ ERR
Sbjct: 16 QSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---YLTDYERR 72
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG- 142
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 73 AFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTN 131
Query: 143 -LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +I++ + K++ +++ F+ D + + ++ L+ ++I I+EG
Sbjct: 132 PITRDKIYDEWRTDKTLLERNRFI-------ADAYQRFSDDPSEANLIHTIIA-NYILEG 183
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+L+T E
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELE 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+I + + E E + + ILGLN + Y++++AN R++ IG+ ++P +
Sbjct: 244 AKITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKD 303
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
NP W+ ++ +++FFE +V Y D++
Sbjct: 304 NPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|429759851|ref|ZP_19292346.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica KON]
gi|429179071|gb|EKY20333.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica KON]
Length = 364
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 178/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ D++ + LT+ ERR
Sbjct: 38 QSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---YLTDYERR 94
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG- 142
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 95 AFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTN 153
Query: 143 -LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +I++ + K++ +++ F+ D + + ++ L+ ++I I+EG
Sbjct: 154 PITRDKIYDEWRTDKTLLERNRFI-------ADAYQRFSDDPSEANLIHTIIA-NYILEG 205
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+L+T E
Sbjct: 206 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELE 265
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+I + + E E + + ILGLN + Y++++AN R++ IG+ ++P +
Sbjct: 266 AKITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKD 325
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
NP W+ ++ +++FFE +V Y D++
Sbjct: 326 NPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 361
>gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
Length = 342
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 178/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ D++ + LT+ ERR
Sbjct: 16 QSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---YLTDYERR 72
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG- 142
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 73 AFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTN 131
Query: 143 -LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +I++ + K++ +++ F+ D + + ++ L+ ++I I+EG
Sbjct: 132 PITRDKIYDEWRTDKTLLERNRFI-------ADAYQRFSDDPSEANLIHTIIA-NYILEG 183
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+L+T E
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELE 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+I + + E E + + ILGLN + Y++++AN R++ IG+ ++P +
Sbjct: 244 AKITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKD 303
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
NP W+ ++ +++FFE +V Y D++
Sbjct: 304 NPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|337751078|ref|YP_004645240.1| protein NrdB [Paenibacillus mucilaginosus KNP414]
gi|379724110|ref|YP_005316241.1| protein NrdB [Paenibacillus mucilaginosus 3016]
gi|386726845|ref|YP_006193171.1| protein NrdB [Paenibacillus mucilaginosus K02]
gi|336302267|gb|AEI45370.1| NrdB [Paenibacillus mucilaginosus KNP414]
gi|378572782|gb|AFC33092.1| NrdB [Paenibacillus mucilaginosus 3016]
gi|384093970|gb|AFH65406.1| protein NrdB [Paenibacillus mucilaginosus K02]
Length = 345
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 182/338 (53%), Gaps = 21/338 (6%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+++I G+T ++ +L KY+WA Y + N W+P+EI + +D + +K L+ EER+
Sbjct: 20 RRMIGGNTTNLIELNNVKYDWATKMYRTMMNNFWIPEEIPLAQDAKDYK---FLSPEERQ 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ + F DSL N+ +ITA E L Q F+EA+H+ +Y YI++S+
Sbjct: 77 SYDKIISFLIFLDSLQTANLP-NINEYITASEVNLCLTVQTFQEAVHSQSYSYILDSVCS 135
Query: 144 DEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
E+ EI+N + E K + ++ F +TDL + + L+++++ I+EG
Sbjct: 136 AEVRDEIYNQWREDKHLLKRNRF-------ITDLYERFIEEPSTDNLMRTIMA-NYILEG 187
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF ALGRQ KM+G+ +YI RDE H ++ I+ ENP ++T E
Sbjct: 188 IYFYSGFSFFYALGRQGKMLGTVSEIKYIQRDELTHLALFQNIFREIRKENPEVFTDELI 247
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+++ + A+ E + + I GL+ + Y+++++N RM+++G++ ++P
Sbjct: 248 EDLRGMMRTAVSHEIEWGQYITNNKIHGLSNEIIDQYIKYLSNERMRKLGLEILYPEIVE 307
Query: 321 NPFPWM---SEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+P W+ S M IK ++FFE +V Y L+W+
Sbjct: 308 HPMKWVESFSNMNAIK--TDFFEQKVTNYSKSSNLNWD 343
>gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-134-V-Col7a]
gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-049-V-Sch6]
gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-049-V-Sch6]
gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-134-V-Col7a]
Length = 342
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 178/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ D++ + LT+ ERR
Sbjct: 16 QSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---YLTDYERR 72
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG- 142
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 73 AFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTN 131
Query: 143 -LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +I++ + K++ +++ F+ D + + ++ L+ ++I I+EG
Sbjct: 132 PITRDKIYDEWRTDKTLLERNRFI-------ADAYQRFSDDPSEANLIHTIIA-NYILEG 183
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+L+T E
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELE 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+I + + E E + + ILGLN + Y++++AN R++ IG+ ++P +
Sbjct: 244 AKITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKD 303
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
NP W+ ++ +++FFE +V Y D++
Sbjct: 304 NPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
TK-6]
gi|384128116|ref|YP_005510729.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6]
gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
TK-6]
gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6]
Length = 342
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 173/342 (50%), Gaps = 16/342 (4%)
Query: 18 ERINKINKQIINGHTDVNQLVPFKYNWAWDRYLS-SCANHWMPQEINMQRDIELWKNPIG 76
+R K I T++ +L KY WA+D Y + N W+P+EI M D + ++
Sbjct: 12 DRETSKRKVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQYEK--D 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+ E+R + L F DS N ++ R+ITAPE L Q F+EA+H+++YQ+
Sbjct: 70 LSPYEKRAYEMVLSFLIALDSYQVN-MLKEFARYITAPELVMALTSQEFQEALHSYSYQF 128
Query: 137 IVESLGLDEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I+ES+ ++ EI+N + + + ++++ V+ L + ++ +K+
Sbjct: 129 ILESVVEPQVADEIYNYWRQDTVLMERNQ-------VIAQLYNEFIRHPTEENFIKATFG 181
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
++E L+FY GF LGRQ KM + + +YI RDE H ++I TIK ENP
Sbjct: 182 -NYVLESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELTHVTLFRNIIQTIKQENPE 240
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
L+T E K + + F A + E + + ILG+N Y++++AN R+ Q+G K
Sbjct: 241 LFTPELEKWVYEFFKYATDAEIKWGQYVTQNQILGINNTLIDRYIKYLANLRLTQLGYKP 300
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDW 354
++P NP W+ + I +++FF+ + Y L W
Sbjct: 301 LYPEITENPMKWIDQFRTINDTKTDFFQAKPQTYAKRSELKW 342
>gi|340758208|ref|ZP_08694799.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
varium ATCC 27725]
gi|340577668|gb|EES63667.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
varium ATCC 27725]
Length = 344
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 181/340 (53%), Gaps = 24/340 (7%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G T++ L KY WA Y + N W+P++I++ +D +KN LT++E+
Sbjct: 18 RRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI +ITAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
E+ I++ + E K + ++++++ + ND+ K +IV ++E
Sbjct: 134 KEIRNSIYDKWREDKILFERNKYIAEMYQRFLE-------NPNDENFSK-VIVADYLLEA 185
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L +N+M+G+S++ + I RDE H L+ I+ ENP+ + E
Sbjct: 186 IYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE-- 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
EI +F KA+E E + + ILG+ +T + Y +++AN R++ IG+K I+ + +
Sbjct: 244 -EIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYDGFNK 302
Query: 321 NPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
NP+ +++ + E +NFFE V Y ++D W+
Sbjct: 303 NPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 342
>gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
concisus 13826]
gi|424782404|ref|ZP_18209251.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Campylobacter showae CSUNSWCD]
gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
concisus 13826]
gi|421959724|gb|EKU11332.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Campylobacter showae CSUNSWCD]
Length = 340
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 175/346 (50%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ +S E N ++++ NG+ + KY WA + AN W P+E++
Sbjct: 2 NRKRIYNPSSNE--NLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D+ + LTE E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 DDVRDY--AYNLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ +R+K++++ + L D
Sbjct: 118 EEANHSKSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEEL-------AGEVTD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 EKLLLAMVA-NQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T E +I +F KA LE + + I+G + Y+ ++ +
Sbjct: 230 NSVRKERPDLFTPETEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQ 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ IG+K+ + +P W+ + ++SNFFE +V Y G
Sbjct: 290 RLVAIGLKRKYNVA-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334
>gi|416115550|ref|ZP_11594081.1| Ribonucleotide reductase of class Ia 2C beta [Campylobacter
concisus UNSWCD]
gi|384577716|gb|EIF06993.1| Ribonucleotide reductase of class Ia 2C beta [Campylobacter
concisus UNSWCD]
Length = 340
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 175/346 (50%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ +S E N ++++ NG+ + KY WA + AN W P+E++
Sbjct: 2 NRKRIYNPSSNE--NLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D+ + LTE E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 DDVRDY--TYNLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ +R+K++++ + L D
Sbjct: 118 EEANHSKSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEEL-------AGEVTD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 EKLLLAMVA-NQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E P+L+T E +I +F KA LE + + I+G + Y+ ++ +
Sbjct: 230 NSVRKERPDLFTPETEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQ 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ IG+K+ + +P W+ + ++SNFFE +V Y G
Sbjct: 290 RLVAIGLKRKYNVA-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334
>gi|401680438|ref|ZP_10812354.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
ACP1]
gi|400218519|gb|EJO49398.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
ACP1]
Length = 342
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 177/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+ +I G+T ++ + KY+WA Y + N W+P+EI++ D++ + LT+ ERR
Sbjct: 16 QSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---YLTDYERR 72
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG- 142
+ + F + DS+ + N+ R+ITA E L QAF+E IH +Y YI++++
Sbjct: 73 AFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTN 131
Query: 143 -LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+ +I++ + K++ ++ F+ D + + ++ L+ ++I I+EG
Sbjct: 132 PITRDKIYDEWRTDKTLLARNRFI-------ADAYQRFSDDPSEANLIHTIIA-NYILEG 183
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+L+T E
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELE 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+I + + E E + + ILGLN + Y++++AN R++ IG+ ++P +
Sbjct: 244 AKITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKD 303
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
NP W+ ++ +++FFE +V Y D++
Sbjct: 304 NPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|381200481|ref|ZP_09907618.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobium
yanoikuyae XLDN2-5]
gi|427410016|ref|ZP_18900218.1| hypothetical protein HMPREF9718_02692 [Sphingobium yanoikuyae ATCC
51230]
gi|425712149|gb|EKU75164.1| hypothetical protein HMPREF9718_02692 [Sphingobium yanoikuyae ATCC
51230]
Length = 350
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 161/315 (51%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + K+L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLAQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC I L ++ E L T +I + K + +E
Sbjct: 176 NKMKGMGQIVTWSVRDETLHCEGIIKLFHSFVKERDCL-TASVKDDIMDMCQKTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ +++ + +
Sbjct: 235 FVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY G T
Sbjct: 295 NFFETRATEYSKGAT 309
>gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter
litoralis HTCC2594]
gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis
HTCC2594]
Length = 356
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 162/315 (51%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D W I TE ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQKI--TEHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ E +
Sbjct: 69 EVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLEYEE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + ++L VF EG+ + F ++ R
Sbjct: 128 MKDKHDYLQLF------------GVDTDEDIARTLAVFGGFTEGMQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC + L + E + +T ++I + K++ LE
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGIVRLFHEFVRER-DCYTKAVKEDIIDICQKSVRLEDN 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G++ I+ + +P PW++ +++ + +
Sbjct: 235 FIDLAFEMGPVSGMTPKEIKKYIRYIADWRLGQLGLQPIYMVDDHPLPWLAPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFE R EY G T
Sbjct: 295 NFFEQRATEYSKGAT 309
>gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp.
K31]
gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31]
Length = 346
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 156/314 (49%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA + + HWMP+E+ + D++ W + L ++ER L+ + FF+ +D
Sbjct: 20 PFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDIE 77
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A+N + R E + L A E IH AY ++E++G+ E E F A+ + +++
Sbjct: 78 VADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQAM 136
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
RDK +F+ F + + + ++L +F EGL + F ++ R N
Sbjct: 137 RDKHDFMQKF------------GVETNADIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 184
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC I L + E + T E +I + + +E +
Sbjct: 185 KMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAETKCV-TPEVAADIVECCKSVVIMEDAF 243
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I G+ K Y+RFIA+ R++Q+ + +++ + NP PW+ ++ + +N
Sbjct: 244 IDLAFEAGEIQGMTPHDIKQYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEHAN 303
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 304 FFEARATEYSKAAT 317
>gi|393721203|ref|ZP_10341130.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas
echinoides ATCC 14820]
Length = 354
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 159/318 (50%), Gaps = 19/318 (5%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
Q PF+Y WA+D + HWMP+E+ + D W L++ ER L+ + FF+ A
Sbjct: 9 QYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66
Query: 96 DSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D + + Y I P E + L + E +H AY ++++++G+ E E + A+ E
Sbjct: 67 D-VEVQDCYHEKYGRIFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLE 124
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
++DK ++L +T +D+ + K+L +F EGL + F ++
Sbjct: 125 YSEMKDKHDYL------------QTFGVDSDEDIAKTLAMFGGFTEGLQLFASFAMLMNF 172
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R NKM G ++ + +RDES+HC I L +T E L T +I + + L
Sbjct: 173 PRFNKMKGMGQIVTWSIRDESLHCEGIIKLFHTFTKERDCL-TKSVRSDIMDMCQHTVRL 231
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ M++
Sbjct: 232 EDSFIDLAFEMGPVNGMTPKEIKKYIRYIADWRLGQLGMKPIYMIDEHPLPWLAPMLNGV 291
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE R EY T
Sbjct: 292 EHANFFEQRATEYSKAAT 309
>gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum C str. Eklund]
gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum C str. Eklund]
Length = 342
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 180/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E N+ + IING T ++ + KYNWA + Y + N W+P+EI++ D++ +
Sbjct: 9 ENGNRGTESIINGSTTNLREWNRIKYNWANELYRNMLNNFWIPEEISLNEDVKQFS---Y 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITAPE L QAF+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSIQSENLP-NISRYITAPEVSSILNIQAFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E K++ ++++F+ +F T + L++++
Sbjct: 125 ILDTVTNPITRDKIYDQWREDKNLLERNKFIAGIYQ-----RFNENPTT--ENFLRTIMA 177
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K EN +
Sbjct: 178 -NYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENLD 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T +E + +E E + + ILG+N + Y+++++N R+ IG++
Sbjct: 237 IFTESIIEEFRMMMKTGVEHEIKWGQYVTNNEILGINNNLIEKYIKYLSNLRLNAIGLEV 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P +P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEITEHPMEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339
>gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
curvus 525.92]
gi|402546364|ref|ZP_10843239.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
sp. FOBRC14]
gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
curvus 525.92]
gi|401017177|gb|EJP75938.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
sp. FOBRC14]
Length = 340
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 177/346 (51%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ +S E N ++++ NG+ + KY WA + AN W P+E++
Sbjct: 2 NRKRIYNPSSNE--NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
D+ + LT+ E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 DDVRDY--AYNLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ + +R+K++++ + L D
Sbjct: 118 EEANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEEL-------AGEVTD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 EKLLLAMVA-NQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E +L+T E ++I +F KA LE + I+G + Y+ ++ +
Sbjct: 230 NSVRAERSDLFTPEMEEKIYDMFEKAGNLEIKWGRYITQNQIMGFTDDIIEEYIHYLVDQ 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ IG+K+ + ++P W+ + ++SNFFE++V Y G
Sbjct: 290 RLVAIGLKRKYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS 334
>gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 348
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 22 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 78
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 137
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 138 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KIIIANY 185
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 186 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 245
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 246 AE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 302
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 303 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 7_1]
gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 7_1]
Length = 344
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 242 AE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|399078562|ref|ZP_10752936.1| ribonucleotide reductase, beta subunit [Caulobacter sp. AP07]
gi|398033528|gb|EJL26825.1| ribonucleotide reductase, beta subunit [Caulobacter sp. AP07]
Length = 346
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA + + HWMP+E+ + D++ W + L ++ER L+ + FF+ +D
Sbjct: 20 PFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDIE 77
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A+N + R E + L A E IH AY ++E++G+ E E F A+ E +++
Sbjct: 78 VADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYQAM 136
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
RDK +F+ F + + + ++L +F EGL + F ++ R N
Sbjct: 137 RDKHDFMQKF------------GVETNADIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 184
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC I L + E + T +I + +E +
Sbjct: 185 KMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAETKCV-TKAVAADIVDCCKTVVTMEDAF 243
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I G+ K Y+RFIA+ R++Q+ + +++ + NP PW+ ++ + +N
Sbjct: 244 IDLAFEAGEIQGMTPDDIKKYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEHAN 303
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 304 FFEARATEYSKAAT 317
>gi|422939635|ref|ZP_16967011.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|339890291|gb|EGQ79440.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 348
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 179/345 (51%), Gaps = 32/345 (9%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 21 SRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 77
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 78 EAYDGILSFLIFLDSIQTNNIP-NISEHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESIL 136
Query: 143 LDELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 137 PKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIAN 184
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN +
Sbjct: 185 YLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFF 244
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
+ E + +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 245 SAE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLF 301
Query: 317 P-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 302 SGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_27]
gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_27]
Length = 344
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 242 AE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|422339070|ref|ZP_16420030.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355371416|gb|EHG18764.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 348
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 22 RRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 78
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 137
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 138 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 185
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 186 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 245
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 246 AE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 302
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 303 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
hominis ATCC BAA-381]
gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
hominis ATCC BAA-381]
Length = 340
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 164/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ D+ + LT E+R+ + + DS
Sbjct: 35 KYVWALKLWDIMEANTWFPREVDTTDDVRDYN--FNLTPAEKRMYELVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + +I+ +R+
Sbjct: 93 NNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICQNTDQIYEMEKFDDVLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++++ + L ++ KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDYISSIYEEL-------AGEVDENKLLLAMVA-NQILEGIYFYSGFCSIYALARSGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ + +I ++F KA ELE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNDKNIAKIYEMFEKAGELEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+GL + + Y+ ++ + R+ IG+ + + R+P W+ + ++SNFF
Sbjct: 265 YITQNQIMGLTDEIIEEYIHYLVDNRLSAIGLNKKYN-ARHPIKWVDDFAKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 348
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 22 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 78
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 137
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 138 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 185
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 186 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 245
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 246 AE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 302
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 303 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
kaustophilus HTA426]
gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus
kaustophilus HTA426]
Length = 346
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 27 IINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
IING ++V Y WA+ +Y AN W P EINM +D++ + LT+ E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQFPQ---LTDREQDAF 78
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
+ +G + DS+ + +IT P ++ A +E IH H+Y Y++ SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ E+F+ + ++R +++F+ T+ N + LL+S IVF I+EGLF
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV-------TNGYKAFAEEPNVENLLRS-IVFDVILEGLF 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L RQ KM+ +S + YI RDE +H + + + E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ F+KA ELE +A + + I G+++ ++Y++F AN R Q+G + F Y NP
Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 323 FPWMS--EMIHIKKESNFFETRVMEY 346
W+ E + + K S+FFE + +Y
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQY 334
>gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 241
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 116/195 (59%), Gaps = 2/195 (1%)
Query: 20 INKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTE 79
+N +K+++NG TDVNQL PFKY WAW+ +L++ NHW P +INM +D+ + + LT
Sbjct: 48 VNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHH--KLTL 105
Query: 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 139
EER + + L + +T+D LA NI L ++APE + Y RQ +EEA+HT YQ+ +E
Sbjct: 106 EERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHCIE 165
Query: 140 SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIM 199
++GLD++EI+N Y + I K + + + N + L + + FA I
Sbjct: 166 TIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFLMAYLFFAGIF 225
Query: 200 EGLFFYVGFVQILAL 214
EG++FY GF I AL
Sbjct: 226 EGVWFYNGFSPIFAL 240
>gi|422347423|ref|ZP_16428335.1| hypothetical protein HMPREF9476_02408 [Clostridium perfringens
WAL-14572]
gi|373224721|gb|EHP47058.1| hypothetical protein HMPREF9476_02408 [Clostridium perfringens
WAL-14572]
Length = 344
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%)
Query: 15 NSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
N F I K++ING+T ++N KY W + Y + N W+P+EIN+ +D++ +K
Sbjct: 10 NEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK 69
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYR-HITAPECRQYLLRQAFEEAIHTH 132
LT+EE+ + L F DS+ N LG +ITA E L QAF+EA+H+
Sbjct: 70 ---LTKEEKTAYDKILSFLIFLDSIQTAN--LGNINSYITASEVNLCLTIQAFQEAVHSQ 124
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192
+Y Y+++S+ E +EI D L+ + DL + + +KS+
Sbjct: 125 SYSYMLDSICSPE-----ERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFIKSV 179
Query: 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN 252
+ I+EG++FY GF+ L R KM GS++ +YI RDE+ H +I +K E
Sbjct: 180 MA-NYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKEEI 238
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
P ++T E +E+ ++ +E E + + + G+N + Y+++I N R+K IG+
Sbjct: 239 PEVFTKELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKSIGL 298
Query: 313 KQIFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
+ +F Y NP PW+ + +++FFE + Y G L
Sbjct: 299 EPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGAL 340
>gi|336420341|ref|ZP_08600575.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 11_3_2]
gi|336161108|gb|EGN64119.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 11_3_2]
Length = 348
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 179/345 (51%), Gaps = 32/345 (9%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 21 SRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 77
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 78 EAYDGILSFLIFLDSIQTNNIP-NISEHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESIL 136
Query: 143 LDELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 137 PKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIAN 184
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN +
Sbjct: 185 YLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFF 244
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
+ E + +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 245 SAE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLF 301
Query: 317 P-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 302 SGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|421527240|ref|ZP_15973844.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum ChDC F128]
gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|402256674|gb|EJU07152.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum ChDC F128]
Length = 344
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 242 AE---TIYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_33]
gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_33]
Length = 344
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 179/345 (51%), Gaps = 32/345 (9%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 17 SRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 73
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 74 EAYDGILSFLIFLDSIQTNNIP-NISEHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESIL 132
Query: 143 LDELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 133 PKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIAN 180
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN +
Sbjct: 181 YLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFF 240
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
+ E + +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 241 SAE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLF 297
Query: 317 P-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 298 SGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
oral taxon 158 str. F0412]
gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
oral taxon 158 str. F0412]
Length = 342
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 180/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E ++ + +I G+T ++ + KY+WA Y + N W+P+EI++ D++ +
Sbjct: 9 EHGDRGTQSMIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQFP---Y 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ERR + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDYERRAFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + K++ ++ F+ D + + ++ L+ ++I
Sbjct: 125 ILDTVTNPITRDKIYDEWRTDKTLLARNRFI-------ADAYQRFSDDPSEANLIHTIIA 177
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I ++ E P+
Sbjct: 178 -NYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPD 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
L+T E ++I + + E E + + ILGLN + Y++++AN R++ IG+
Sbjct: 237 LFTPELEEKITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPH 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P + NP W+ ++ +++FFE +V Y D++
Sbjct: 297 LYPEIKDNPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|373498301|ref|ZP_09588816.1| hypothetical protein HMPREF0402_02689 [Fusobacterium sp. 12_1B]
gi|404367517|ref|ZP_10972880.1| hypothetical protein FUAG_00959 [Fusobacterium ulcerans ATCC 49185]
gi|371962341|gb|EHO79950.1| hypothetical protein HMPREF0402_02689 [Fusobacterium sp. 12_1B]
gi|404288691|gb|EFS25444.2| hypothetical protein FUAG_00959 [Fusobacterium ulcerans ATCC 49185]
Length = 344
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 183/340 (53%), Gaps = 24/340 (7%)
Query: 25 KQIING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+++I G T++ L KY WA Y + N W+P++I++ +D +KN LT++E+
Sbjct: 18 RRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI +ITAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
E+ I++ + E K + ++++++ ++ K ND+ K +I+ ++E
Sbjct: 134 KEIRNSIYDKWREDKILFERNKYI-------AEMYQKFLEEPNDKNFSK-VIIADYLLEA 185
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF L +N+M+G+S++ + I RDE H L+ I+ ENP+ + E
Sbjct: 186 IYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE-- 243
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
EI +F KA+E E + + ILG+ +T + Y +++AN R++ IG+K I+ + +
Sbjct: 244 -EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYEGFNK 302
Query: 321 NPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
NP+ +++ + E +NFFE V Y ++D W+
Sbjct: 303 NPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 342
>gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. D11]
gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. D11]
Length = 344
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 179/345 (51%), Gaps = 32/345 (9%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 17 SRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 73
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 74 EAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESIL 132
Query: 143 LDELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 133 PKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIAN 180
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN +
Sbjct: 181 YLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFF 240
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
+ E + +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 241 SAE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLF 297
Query: 317 P-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 298 SGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens str. 13]
gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens ATCC 13124]
gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens E str. JGS1987]
gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens B str. ATCC 3626]
gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens CPE str. F4969]
gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens NCTC 8239]
gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens C str. JGS1495]
gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens D str. JGS1721]
gi|422875306|ref|ZP_16921791.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens F262]
gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium
perfringens str. 13]
gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens ATCC 13124]
gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens C str. JGS1495]
gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens E str. JGS1987]
gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens B str. ATCC 3626]
gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens CPE str. F4969]
gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens D str. JGS1721]
gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens NCTC 8239]
gi|380303836|gb|EIA16132.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens F262]
Length = 344
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%)
Query: 15 NSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
N F I K++ING+T ++N KY W + Y + N W+P+EIN+ +D++ +K
Sbjct: 10 NEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK 69
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYR-HITAPECRQYLLRQAFEEAIHTH 132
LT+EE+ + L F DS+ N LG +ITA E L QAF+EA+H+
Sbjct: 70 ---LTKEEKTAYDKILSFLIFLDSIQTAN--LGNINSYITASEVNLCLTIQAFQEAVHSQ 124
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192
+Y Y+++S+ E +EI D L+ + DL + + +KS+
Sbjct: 125 SYSYMLDSICSPE-----ERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFIKSV 179
Query: 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN 252
+ I+EG++FY GF+ L R KM GS++ +YI RDE+ H +I +K E
Sbjct: 180 MA-NYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKEEI 238
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
P ++T E +E+ ++ +E E + + + G+N + Y+++I N R+K IG+
Sbjct: 239 PEVFTKELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKAIGL 298
Query: 313 KQIFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
+ +F Y NP PW+ + +++FFE + Y G L
Sbjct: 299 EPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGAL 340
>gi|419629971|ref|ZP_14162682.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 60004]
gi|419638566|ref|ZP_14170624.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 86605]
gi|419667319|ref|ZP_14197295.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|419695847|ref|ZP_14223728.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23210]
gi|424848830|ref|ZP_18273304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni D2600]
gi|356487852|gb|EHI17791.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni D2600]
gi|380606786|gb|EIB26679.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 60004]
gi|380618407|gb|EIB37537.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 86605]
gi|380646168|gb|EIB63149.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|380676650|gb|EIB91530.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23210]
Length = 340
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 164/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTVGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L GN +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GNV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|336399917|ref|ZP_08580714.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 21_1A]
gi|336161120|gb|EGN64130.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 21_1A]
Length = 344
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 179/345 (51%), Gaps = 32/345 (9%)
Query: 24 NKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEER 82
+++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 17 SRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 73
Query: 83 RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 74 EAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESIL 132
Query: 143 LDELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 133 PKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIAN 180
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN +
Sbjct: 181 YLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFF 240
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
+ E + +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 241 SAE---TVYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLF 297
Query: 317 P-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 298 SGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum F str. Langeland]
gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum B1 str. Okra]
gi|387819079|ref|YP_005679426.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
[Clostridium botulinum H04402 065]
gi|429244887|ref|ZP_19208306.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum CFSAN001628]
gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum F str. Langeland]
gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum B1 str. Okra]
gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
[Clostridium botulinum H04402 065]
gi|428758077|gb|EKX80530.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum CFSAN001628]
Length = 342
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 179/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ DI K
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPY 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ + K L++++
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEHLLERNKFIAGIYE-------KFNKEPEIHNFLRAIMA 177
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K EN +
Sbjct: 178 -NYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSH 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E Q+ +E E + + ILGLN + + Y+++++N R+ IG+K
Sbjct: 237 IFTEELEEEFRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKP 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEINKHPMEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|423137700|ref|ZP_17125343.1| hypothetical protein HMPREF9942_01481 [Fusobacterium nucleatum
subsp. animalis F0419]
gi|371959389|gb|EHO77078.1| hypothetical protein HMPREF9942_01481 [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 344
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E + +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 242 AE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|395491699|ref|ZP_10423278.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas sp.
PAMC 26617]
Length = 354
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 158/318 (49%), Gaps = 19/318 (5%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
Q PF+Y WA+D + HWMP+E+ + D W L++ ER L+ + FF+ A
Sbjct: 9 QYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66
Query: 96 DSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D + + Y I P E + L + E +H AY ++++++G+ E E + A+ E
Sbjct: 67 D-VEVQDCYHEKYGRIFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLE 124
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
++DK ++L +T +D+ + K+L +F EGL + F ++
Sbjct: 125 YSEMKDKHDYL------------QTFGVDSDEDIAKTLAMFGGFTEGLQLFASFAMLMNF 172
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R NKM G ++ + +RDES+HC I L + E N T +I + + L
Sbjct: 173 PRFNKMKGMGQIVTWSIRDESLHCEGIIKLFHAFCAER-NCLTKSVRDDIADMCQHTVRL 231
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ M++
Sbjct: 232 EDNFIDLAFEMGPVNGMTPKEIKKYIRYIADWRLGQLGMKPIYMIDEHPLPWLAPMLNGV 291
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE R EY T
Sbjct: 292 EHANFFEQRATEYSKAAT 309
>gi|393723896|ref|ZP_10343823.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas sp.
PAMC 26605]
Length = 354
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
Q PF+Y WA+D + HWMP+E+ + D W L++ ER L+ + FF+ A
Sbjct: 9 QYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66
Query: 96 DSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D + + Y I P E + L + E +H AY ++++++G+ E E + A+ E
Sbjct: 67 D-VEVQDCYHEKYGRIFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLE 124
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
++DK ++L +T D+ + K+L +F EGL + F ++
Sbjct: 125 YSEMKDKHDYL------------QTFGVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNF 172
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R NKM G ++ + +RDES+HC I L + E N T +I + + L
Sbjct: 173 PRFNKMKGMGQIVTWSIRDESLHCEGIIKLFHAFCAER-NCMTKSVRDDIADMCQHTVRL 231
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ M++
Sbjct: 232 EDNFIDLAFEMGPVNGMTPKEIKKYIRYIADWRLGQLGMKPIYMIDEHPLPWLAPMLNGV 291
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE R EY T
Sbjct: 292 EHANFFEQRATEYSKAAT 309
>gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens SM101]
gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens SM101]
Length = 344
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 173/342 (50%), Gaps = 15/342 (4%)
Query: 15 NSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
N F I K++ING+T ++N KY W + Y + N W+P+EIN+ +D++ +K
Sbjct: 10 NEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK 69
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYR-HITAPECRQYLLRQAFEEAIHTH 132
LT+EE+ + L F DS+ N LG +ITA E L QAF+EA+H+
Sbjct: 70 ---LTKEEKAAYDKILSFLIFLDSIQTAN--LGNINSYITASEVNLCLTIQAFQEAVHSQ 124
Query: 133 AYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSL 192
+Y Y+++S+ E +EI D L+ + DL + + +KS+
Sbjct: 125 SYSYMLDSICSPE-----ERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSIENFIKSV 179
Query: 193 IVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN 252
+ I+EG++FY GF+ L R KM GS++ +YI RDE+ H +I +K E
Sbjct: 180 MA-NYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKEEI 238
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
P ++T E +E+ ++ +E E + + + G+N + Y+++I N R K IG+
Sbjct: 239 PEVFTKELKEELREMMRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRAKAIGL 298
Query: 313 KQIFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
+ +F Y NP PW+ + +++FFE + Y G L
Sbjct: 299 EPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGAL 340
>gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum A2 str. Kyoto]
gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A2 str. Kyoto]
Length = 342
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 180/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ DI K
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPY 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ ++ N + + +I+
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEHLLERNKFIAGI--------YEKFNKEPEIHNFLRVIM 176
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K ENP+
Sbjct: 177 ANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENPH 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E Q+ +E E + + ILGLN + + Y+++++N R+ IG+K
Sbjct: 237 IFTEELEEEFRQMMRIGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKP 296
Query: 315 IF-PYERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++ ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYLEINKHPMEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|448237090|ref|YP_007401148.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus sp.
GHH01]
gi|445205932|gb|AGE21397.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus sp.
GHH01]
Length = 346
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 163/326 (50%), Gaps = 19/326 (5%)
Query: 27 IINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
IING ++V Y WA+ +Y AN W P EINM +D++ + LT E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQFPQ---LTAREQEAF 78
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
+ +G + DS+ + +IT P ++ A +E IH H+Y Y++ SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ E+F+ + ++R +++F+ T+ N + LL+S IVF I+EGLF
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV-------TNGYKAFAEEPNVENLLRS-IVFDVILEGLF 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L RQ KM+ +S + YI RDE +H + + + E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFTKIFKEVLNEYPEYRTPELVDF 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ F+KA ELE +A + + I G+++ ++Y++F AN R Q+G + F Y NP
Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 323 FPWMS--EMIHIKKESNFFETRVMEY 346
W+ E + + K S+FFE + +Y
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQY 334
>gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
48]
gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
48]
Length = 350
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 152/314 (48%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D++ W + L + ER L+ + FF+ +D
Sbjct: 23 PFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWASK--LNDNERNLLTQIFRFFTQSDIE 80
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L A E +H AY ++E++G+ E E F A+ E +++
Sbjct: 81 VQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYEAM 139
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
RDK F+ F D + ++L +F EGL + F ++ R N
Sbjct: 140 RDKHNFMQKF------------GVDTDADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 187
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC I L + E + T +I + LE +
Sbjct: 188 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVSLEDKF 246
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ + G + G+ K Y+R+IA+ R++Q+ + ++F + NP PW+ ++ + +N
Sbjct: 247 IDLSFEMGPVEGMTPDDIKQYIRYIADWRLRQLELPEVFGVQENPLPWLQVLLSGVEHAN 306
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 307 FFEARATEYSKAAT 320
>gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 414]
gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 414]
Length = 340
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 165/311 (53%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS +
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTAGEKRMYDLVWSQLISMDSFQS 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|424842989|ref|ZP_18267614.1| ribonucleotide reductase, beta subunit [Saprospira grandis DSM
2844]
gi|395321187|gb|EJF54108.1| ribonucleotide reductase, beta subunit [Saprospira grandis DSM
2844]
Length = 323
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 157/319 (49%), Gaps = 29/319 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +++ W+ + A W EI++ D+ WK L+ E+ +K+ L FF+ +D
Sbjct: 17 LFPIQHDAIWEMRKQALACFWTTDEIDLAADLHDWKK---LSANEQHFIKQVLAFFAASD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL---EIFNAYH 153
+ N+VL YR + E R + Q E IH Y ++++ D E+FNA
Sbjct: 74 GIVNENLVLNFYRDVQLAEARSFYATQIQIEDIHAETYSLLIDTYIQDSAEKNELFNAMQ 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ I +I+ + LI FA + EG+FF F I
Sbjct: 134 TLPCVQRKAKWAIKWIEEAPSFAHR-------------LIAFAAV-EGIFFSGSFCSIYW 179
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE MHC+F L + ++ P+ +E+ + +A+
Sbjct: 180 LKKRGIMPGLTFSNELISRDEGMHCDFACLLYSMLENPLPS-------EELRSIITEAVS 232
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
LE + D +P ++G+N K Y+ F+A+ + +G +++ NPFPWM E+I ++
Sbjct: 233 LEQEFVTDALPVSLIGMNAKLMSQYIEFVADRLLVSLGQPKVYG-SSNPFPWM-ELISLQ 290
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 291 GKTNFFEKRVGDYQKAGVM 309
>gi|398385082|ref|ZP_10543108.1| ribonucleotide reductase, beta subunit [Sphingobium sp. AP49]
gi|397721173|gb|EJK81722.1| ribonucleotide reductase, beta subunit [Sphingobium sp. AP49]
Length = 350
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 161/315 (51%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F +D+ + ++L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLATF------------GVDSDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC I L + E L T +I + K + +E
Sbjct: 176 NKMKGMGQIVTWSVRDETLHCEGIIKLFHAFCAERQCL-TPAVKDDIMDMCQKTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ +++ + +
Sbjct: 235 FVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY G T
Sbjct: 295 NFFETRATEYSKGAT 309
>gi|424835117|ref|ZP_18259787.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
sporogenes PA 3679]
gi|365978244|gb|EHN14336.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
sporogenes PA 3679]
Length = 342
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 178/343 (51%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ D+ K
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDV---KQFPY 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITAPE L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAPEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ ++ N + + +I+
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEHLLERNKFIAGI--------YEKFNKEPEIHNFLRVIM 176
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K EN N
Sbjct: 177 ANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKKENLN 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E Q+ +E E + + ILGLN + Y+++++N R+ I +
Sbjct: 237 IFTGELEEEFRQMMRMGVEHEIKWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIDLMP 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEINKHPMEWIESFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|334342698|ref|YP_004555302.1| ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
L-1]
gi|334103373|gb|AEG50796.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
L-1]
Length = 351
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 159/315 (50%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + K+L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLAQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC I L + E L T +I + K + +E
Sbjct: 176 NKMKGMGQIVSWSVRDETLHCEGIIRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ +++ + +
Sbjct: 235 FIDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY T
Sbjct: 295 NFFETRATEYSKAAT 309
>gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
Length = 346
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 27 IINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
IING ++V Y WA+ +Y AN W P EINM +D++ + LT+ E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQFPQ---LTDREQDAF 78
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
+ +G + DS+ + +IT P ++ A +E IH H+Y Y++ SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ E+F+ + ++R +++F+ T+ N + LL+S IVF I+EGLF
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV-------TNGYKAFAEEPNVENLLRS-IVFDVILEGLF 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L RQ KM+ +S + YI RDE +H + + + E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ + F KA ELE +A + + I G+++ ++Y++F AN R Q+G + F Y NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 323 FPWMS--EMIHIKKESNFFETRVMEY 346
W+ E + + K S+FFE + +Y
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQY 334
>gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 4_1_13]
gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 4_1_13]
Length = 344
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ ++
Sbjct: 242 AE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLYS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium
bathyomarinum JL354]
Length = 354
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 20/319 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D W L+E ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQK--LSEHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E IH AY ++++++G+ E E + + E +
Sbjct: 69 EVQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + ++L F EG+ + F ++ R
Sbjct: 128 MKDKHDYLQQF------------GVDTDEDIARTLAAFGGFTEGMQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L + E + +T ++I + K++ LE
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGIIRLFHEFVRER-DCYTKAVKEDIIDICQKSVRLEDN 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G++ I+ + +P PW++ +++ + +
Sbjct: 235 FIDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DW 354
NFFE R EY G T DW
Sbjct: 295 NFFEQRATEYSKGATKGDW 313
>gi|375007867|ref|YP_004981500.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359286716|gb|AEV18400.1| Ribonucleoside-diphosphate reductase subunit beta [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 346
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 27 IINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
IING ++V Y WA+ +Y AN W P EINM +D++ + LT+ E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQFPQ---LTDREQDAF 78
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
+ +G + DS+ + +IT P ++ A +E IH H+Y Y++ SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ E+F+ + ++R +++F+ T+ N + LL+S IVF I+EGLF
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV-------TNGYKAFAEEPNVENLLRS-IVFDVILEGLF 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L RQ KM+ +S + YI RDE +H + + + E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ + F KA ELE +A + + I G+++ ++Y++F AN R Q+G + F Y NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 323 FPWMS--EMIHIKKESNFFETRVMEY 346
W+ E + + K S+FFE + +Y
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQY 334
>gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 81-176]
gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 81116]
gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni 81-176]
gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 1336]
gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
gi|384440888|ref|YP_005657191.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni M1]
gi|384447524|ref|YP_005655575.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni IA3902]
gi|403055018|ref|YP_006632423.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
gi|415730302|ref|ZP_11472973.1| ribonucleotide reductase, small chain family protein [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|415746013|ref|ZP_11475258.1| ribonucleotide reductase, small chain family protein [Campylobacter
jejuni subsp. jejuni 327]
gi|419618807|ref|ZP_14152335.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 129-258]
gi|419626383|ref|ZP_14159374.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|419630904|ref|ZP_14163505.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|419636615|ref|ZP_14168808.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|419642166|ref|ZP_14173974.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni ATCC 33560]
gi|419653305|ref|ZP_14184282.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|419657432|ref|ZP_14188088.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-1]
gi|419665035|ref|ZP_14195112.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|419668982|ref|ZP_14198782.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|419674767|ref|ZP_14204051.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 110-21]
gi|419680647|ref|ZP_14209504.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 140-16]
gi|419684663|ref|ZP_14213250.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1577]
gi|419686673|ref|ZP_14215099.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1798]
gi|419690722|ref|ZP_14218917.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1893]
gi|419691947|ref|ZP_14220053.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1928]
gi|419694263|ref|ZP_14222232.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9872]
gi|419697717|ref|ZP_14225446.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23211]
gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 81-176]
gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni 81116]
gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 1336]
gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni IA3902]
gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni M1]
gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter
jejuni subsp. jejuni 327]
gi|380594324|gb|EIB15127.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 129-258]
gi|380603437|gb|EIB23538.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|380612132|gb|EIB31669.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|380617213|gb|EIB36392.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|380625286|gb|EIB43883.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni ATCC 33560]
gi|380632683|gb|EIB50739.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|380634916|gb|EIB52760.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-1]
gi|380644276|gb|EIB61468.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|380648157|gb|EIB65029.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|380652649|gb|EIB69118.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 110-21]
gi|380660027|gb|EIB75984.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 140-16]
gi|380663729|gb|EIB79354.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1798]
gi|380666751|gb|EIB82273.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1577]
gi|380668384|gb|EIB83742.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1893]
gi|380671050|gb|EIB86285.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9872]
gi|380671315|gb|EIB86537.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1928]
gi|380677371|gb|EIB92240.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23211]
gi|401780670|emb|CCK66363.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
Length = 340
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 164/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTAGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
Length = 346
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 164/326 (50%), Gaps = 19/326 (5%)
Query: 27 IINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
IING ++V Y WA+ +Y AN W P EINM +D++ + LT+ E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQFPQ---LTDREQDAF 78
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
+ +G + DS+ + +IT P ++ A +E IH H+Y Y++ SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ E+F+ + ++R +++F+ T+ N + LL+S IVF I+EGLF
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV-------TNGYKAFAEEPNVEHLLRS-IVFDVILEGLF 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L RQ KM+ +S + YI RDE +H + + + E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ + F KA ELE +A + + I G+++ ++Y++F AN R Q+G + F Y NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 323 FPWMS--EMIHIKKESNFFETRVMEY 346
W+ E + + K S+FFE + +Y
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQY 334
>gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
upsaliensis JV21]
gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
upsaliensis JV21]
Length = 340
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 163/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ RD ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTRDALDYR--CNLTAAEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ ++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDATLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISGIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ + +I +F +A ELE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNEQNIDKIYSMFKRAGELEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +I+ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDRIYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|397676693|ref|YP_006518231.1| ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397382|gb|AFN56709.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 345
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 165/320 (51%), Gaps = 22/320 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFE--EAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
+ Y I P + +L AF E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYFDKYGRIFRPTEIKMML-TAFNNMETVHIAAYSHLLDTIGMPETE-YSAFLQYK 126
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++DK ++L F + +DQ + ++L + EGL + F ++ R
Sbjct: 127 EMKDKHDYLSTF------------DVGSDQDIARTLAMMGGFTEGLQLFASFAMLMNFPR 174
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
NKM G ++ + +RDES+HC I L +T E L T E ++I + + + +E
Sbjct: 175 FNKMKGMGQIVSWSVRDESLHCEGIIRLFHTFCQERQCL-TKELKEDILNICQRTVRIED 233
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + G + G+ K K Y+R+IA+ R+ Q+G+ I+ E +P PW++ +++ +
Sbjct: 234 AFIDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVEH 293
Query: 336 SNFFETRVMEYQSGGTL-DW 354
+NFFETR EY T DW
Sbjct: 294 ANFFETRSTEYSKAATKGDW 313
>gi|419621774|ref|ZP_14155022.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|419640974|ref|ZP_14172887.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23357]
gi|380601180|gb|EIB21498.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|380618508|gb|EIB37634.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23357]
Length = 340
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 164/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTTGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 3_1_5R]
gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 3_1_5R]
Length = 344
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 179/346 (51%), Gaps = 32/346 (9%)
Query: 23 INKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEE 81
+ ++II G+ T++ L K+ WA Y + AN W+P+++++ +D ++N LT E
Sbjct: 16 LERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPE 72
Query: 82 RRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL 141
R L F DS+ NN V ++TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 73 REAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESI 131
Query: 142 GLDELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
E I++ + + K + +++ F+ FI+ +D F ++V
Sbjct: 132 LPKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEETSDRNFA------------KVLVA 179
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
++E L+FY GF L +NKM+G+S++ + I RDE H +I IK ENPN
Sbjct: 180 NYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAENPNF 239
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
+ E EI +F A+E E + E + +LG+ +T ++Y +++AN R++ IG+ +
Sbjct: 240 FQEE---EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIGLAPM 296
Query: 316 FP-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ + +NP+ + + + SNFFE V Y ++D W+
Sbjct: 297 YDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342
>gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
mobilis subsp. mobilis ZM4]
gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
mobilis subsp. mobilis NCIMB 11163]
gi|384411898|ref|YP_005621263.1| ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932272|gb|AEH62812.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 345
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 163/319 (51%), Gaps = 20/319 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y I P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F + +DQ + ++L + EGL + F ++ R
Sbjct: 128 MKDKHDYLATF------------DVGSDQDIARTLAMMGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L +T E L T + +I + + + +E
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGIIRLFHTFCQERQCL-TKQVKDDILNICQRTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+ I+ E +P PW++ +++ + +
Sbjct: 235 FIDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DW 354
NFFETR EY T DW
Sbjct: 295 NFFETRSTEYSKAATKGDW 313
>gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum A str. ATCC 3502]
gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum A str. ATCC 19397]
gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum A str. Hall]
gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
botulinum A str. ATCC 3502]
gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A str. ATCC 19397]
gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A str. Hall]
Length = 342
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 179/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ DI K
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPY 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ + K L++++
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEHLLERNKFIAGIYE-------KFNKEPEIHNFLRAIMA 177
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K EN +
Sbjct: 178 -NYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENLH 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E Q+ +E E + + ILGLN + + Y+++++N R+ IG+K
Sbjct: 237 IFTEELEEEFRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKP 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEINKHPMEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum A3 str. Loch Maree]
gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A3 str. Loch Maree]
Length = 342
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 179/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ DI K
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPY 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ + K L++++
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEHLLERNKFIAGIYE-------KFNKEPEIHNFLRAIMA 177
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K EN +
Sbjct: 178 -NYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSH 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E Q+ +E E + + ILGLN + + Y+++++N R+ IG+K
Sbjct: 237 IFTEELEEEFRQMMRMGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKP 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEINKHPMEWIDGFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
beijerinckii NCIMB 8052]
gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii
NCIMB 8052]
Length = 344
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 174/331 (52%), Gaps = 13/331 (3%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K+IING+T ++N KY+W D Y N W+P+E+N+ +D++ ++N L EEER
Sbjct: 20 KRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLSQDLKDYQN---LLEEERI 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DS+ N+ +ITA E L Q+F+EA+H+ +Y Y+++S+
Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAVHSQSYSYMLDSICS 135
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +EI D+ L+ + DL + + LL++L+ I+EG++
Sbjct: 136 PE-----KRNEILYQWKDDDILLKRNKFIGDLYNEFIENPTEYNLLRTLMA-NYILEGIY 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ L R KM GS++ +YI RDE+ H ++I ++ ENP L+T E E
Sbjct: 190 FYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQNENPELFTEEVKNE 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ + +E E + + I G+N + ++Y++++ N R+K+I + +F ++NP
Sbjct: 250 LRNMMKIGVEQEILWGHYVIGDKIQGINKQLIENYIKYLGNKRLKEINLSPLFKEQDKNP 309
Query: 323 FPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
W+ + + +++FFE R Y TL
Sbjct: 310 ASWVDTLSNANSVKTDFFEARSTAYAKVTTL 340
>gi|424845784|ref|ZP_18270387.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni NW]
gi|356486684|gb|EHI16666.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni NW]
Length = 340
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 179/345 (51%), Gaps = 15/345 (4%)
Query: 8 KKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K+ NS E + +++I +G+ + KY WA + AN W P+E++ +
Sbjct: 3 RKRIYNPNSNETLG--DRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTK 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D ++ LT E+R+ + DS NN+ +ITAPE L RQA+E
Sbjct: 61 DTLDYR--CNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYE 118
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA H+ +Y +VE++ + I+ +++R+K++F+ + L G+ +D
Sbjct: 119 EANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELA------GDV-DDN 171
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++IN
Sbjct: 172 KLLLAMVA-NQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMIN 230
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
+++ E P+L+ E +I +F KA +LE + + I+G + Y+ ++ + R
Sbjct: 231 SVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQR 290
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
+ I + +++ ++P W+ + ++SNFFE++V Y G
Sbjct: 291 LSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS 334
>gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
upsaliensis RM3195]
gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
upsaliensis RM3195]
Length = 340
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 163/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ RD ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTRDALDYR--CHLTAAEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ ++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVETICDNTDLIYEMEKHDATLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISGIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ + +I +F +A ELE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNEQNIDKIYSMFKRAGELEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +I+ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|379729068|ref|YP_005321264.1| ribonucleoside-diphosphate reductase small chain [Saprospira
grandis str. Lewin]
gi|378574679|gb|AFC23680.1| ribonucleoside-diphosphate reductase small chain [Saprospira
grandis str. Lewin]
Length = 323
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +++ W+ + A W EI++ D+ WK L+ E+ +K L FF+ +D
Sbjct: 17 LFPIQHDAIWEMRKQALACFWTTDEIDLAADLHDWKK---LSANEQHFIKHVLAFFAASD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+VL YR + E R + Q E IH Y ++++ D E +FNA
Sbjct: 74 GIVNENLVLNFYRDVQLAEARSFYATQIQIEDIHAETYSLLIDTYIQDSAEKNALFNAMQ 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ I +I+ + L+ FA + EG+FF F I
Sbjct: 134 TLPCVQRKAKWAIKWIEEAPSFAHR-------------LVAFAAV-EGIFFSGSFCSIYW 179
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE MHC+F L + ++ P+ +E+ + +A+
Sbjct: 180 LKKRGIMPGLTFSNELISRDEGMHCDFACLLYSMLENPIPS-------EELRSIITEAVS 232
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
LE + D +P ++G+N K Y+ F+A+ + +G +++ NPFPWM E+I ++
Sbjct: 233 LEQEFVTDALPVSLIGMNAKLMSQYIEFVADRLLVSLGQPKVYG-SSNPFPWM-ELISLQ 290
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 291 GKTNFFEKRVGDYQKAGVM 309
>gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
gonidiaformans ATCC 25563]
gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
gonidiaformans ATCC 25563]
Length = 344
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 179/346 (51%), Gaps = 32/346 (9%)
Query: 23 INKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEE 81
+ ++II G+ T++ L K+ WA Y + AN W+P+++++ +D ++N LT E
Sbjct: 16 LERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPE 72
Query: 82 RRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL 141
R L F DS+ NN V ++TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 73 REAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESI 131
Query: 142 GLDELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
E I++ + + K + +++ F+ FI+ +D F ++V
Sbjct: 132 LPKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEEASDKNFA------------KVLVA 179
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
++E L+FY GF L +NKM+G+S++ + I RDE H +I IK ENPN
Sbjct: 180 NYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAENPNF 239
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
+ E EI +F A+E E + E + +LG+ +T ++Y +++AN R++ IG+ +
Sbjct: 240 FQEE---EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIGLAPM 296
Query: 316 FP-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ + +NP+ + + + SNFFE V Y ++D W+
Sbjct: 297 YDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342
>gi|421144829|ref|ZP_15604734.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
gi|395488796|gb|EJG09646.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
Length = 348
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 178/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 22 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 78
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 137
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 138 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 185
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 186 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFFS 245
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E + +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ ++
Sbjct: 246 AE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLYS 302
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 303 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|341613531|ref|ZP_08700400.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium
sp. JLT1363]
Length = 353
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 161/319 (50%), Gaps = 20/319 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E IH AY ++++++G+ E E + + E +
Sbjct: 69 EVQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + ++L F EG+ + F ++ R
Sbjct: 128 MKDKHDYLQQF------------GVDTDEDIARTLAAFGGFTEGMQLFASFAMLMNFPRY 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L + E + +T ++I + K++ LE
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGIIRLFHEFVRER-DCYTKAVKEDIIDICQKSVRLEDN 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G++ I+ + +P PW++ +++ + +
Sbjct: 235 FIDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DW 354
NFFE R EY G T DW
Sbjct: 295 NFFEQRATEYSKGATKGDW 313
>gi|404254953|ref|ZP_10958921.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas sp.
PAMC 26621]
Length = 354
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 19/318 (5%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
Q PF+Y WA+D + HWMP+E+ + D W L++ ER L+ + FF+ A
Sbjct: 9 QYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQA 66
Query: 96 DSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D + + Y I P E + L + E +H AY ++++++G+ E E + A+ E
Sbjct: 67 D-VEVQDCYHEKYGRIFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLE 124
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
++DK ++L +T +D+ + K+L +F EGL + F ++
Sbjct: 125 YSEMKDKHDYL------------QTFGVDSDEDIAKTLAMFGGFTEGLQLFASFAMLMNF 172
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R NKM G ++ + +RDES+HC I L + E + T +I + + L
Sbjct: 173 PRFNKMKGMGQIVTWSIRDESLHCEGIIKLFHAFCAER-DCMTKSVRDDIADMCQHTVRL 231
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ M++
Sbjct: 232 EDNFIDLAFEMGPVNGMTPKEIKKYIRYIADWRLGQLGMKPIYMIDEHPLPWLAPMLNGV 291
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFE R EY T
Sbjct: 292 EHANFFEQRATEYSKAAT 309
>gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas
neptunium ATCC 15444]
gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas
neptunium ATCC 15444]
Length = 345
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 159/325 (48%), Gaps = 18/325 (5%)
Query: 32 TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGF 91
T N PF+Y WA++ + HWMP+E+ + D + W + L++ ER L+ + F
Sbjct: 13 TPSNAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWA--VKLSDAERNLLTQIFRF 70
Query: 92 FSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNA 151
F+ +D N + E L + E IH AY ++E++G+ + E F+A
Sbjct: 71 FTQSDVEVGANYMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLLETIGMPDSE-FSA 129
Query: 152 YHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQI 211
+ E K + K ++L F T+ ++ + S+ VF EGL + F +
Sbjct: 130 FMEYKEMAAKHDYLGQF------------GTETNEDIAVSMAVFGAFTEGLQLFASFAML 177
Query: 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKA 271
+ R NKM G ++ + +RDES+HC I L ++ E + T E + I
Sbjct: 178 MNFPRFNKMKGMGQIVTWSIRDESLHCEGMIKLFHSFCAET-GVMTDELRERIRDCCRTV 236
Query: 272 IELEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMI 330
+ LE + E G + G+ K+Y+R+IA+ R+ Q+ ++ I+ ++P PW++E++
Sbjct: 237 VALEDKFIELAFEMGPVEGMTADDIKNYIRYIADWRLNQLKLEPIYGVTKHPIPWLTEIL 296
Query: 331 HIKKESNFFETRVMEYQSGGTL-DW 354
+ + +NFFE R EY G T DW
Sbjct: 297 NGVEHANFFEQRSTEYSKGATKGDW 321
>gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni RM1221]
gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|384442574|ref|YP_005658826.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|407941683|ref|YP_006857323.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni PT14]
gi|419623666|ref|ZP_14156790.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|419634713|ref|ZP_14167041.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 55037]
gi|419647540|ref|ZP_14178899.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|419650717|ref|ZP_14181927.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|419655689|ref|ZP_14186531.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|419658938|ref|ZP_14189485.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|419662409|ref|ZP_14192702.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|419663190|ref|ZP_14193391.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|419676683|ref|ZP_14205849.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 87330]
gi|419683601|ref|ZP_14212288.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1213]
gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni RM1221]
gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|380600360|gb|EIB20698.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|380614067|gb|EIB33513.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 55037]
gi|380627509|gb|EIB45900.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|380628020|gb|EIB46360.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|380636534|gb|EIB54227.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|380638216|gb|EIB55795.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|380640847|gb|EIB58288.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|380643370|gb|EIB60599.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|380655766|gb|EIB72065.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 87330]
gi|380658142|gb|EIB74174.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1213]
gi|407905521|gb|AFU42350.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni PT14]
Length = 340
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 179/345 (51%), Gaps = 15/345 (4%)
Query: 8 KKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
+K+ NS E + +++I +G+ + KY WA + AN W P+E++ +
Sbjct: 3 RKRIYNPNSNETLG--DRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTK 60
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFE 126
D ++ LT E+R+ + DS NN+ +ITAPE L RQA+E
Sbjct: 61 DALDYR--CNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYE 118
Query: 127 EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186
EA H+ +Y +VE++ + I+ +++R+K++F+ + L G+ +D
Sbjct: 119 EANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELA------GDV-DDN 171
Query: 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246
KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++IN
Sbjct: 172 KLLLAMVA-NQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMIN 230
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
+++ E P+L+ E +I +F KA +LE + + I+G + Y+ ++ + R
Sbjct: 231 SVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQR 290
Query: 307 MKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
+ I + +++ ++P W+ + ++SNFFE++V Y G
Sbjct: 291 LSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS 334
>gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
crescentus CB15]
gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
crescentus NA1000]
gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter
crescentus CB15]
gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter
crescentus NA1000]
Length = 347
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 157/314 (50%), Gaps = 17/314 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D++ W + L ++ER L+ + FF+ +D
Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDVE 78
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L A E IH AY ++E++G+ E E F+A+ E +++
Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
+ K +++ +T ++ + ++L +F EGL + F ++ R N
Sbjct: 138 KAKHDYM------------QTFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 185
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ + +RDES+HC+ I L + E + T +I + +E +
Sbjct: 186 KMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVGMEDNF 244
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I G+ K+Y+RF+A+ R++Q+ + +++ + NP PW+ ++ + +N
Sbjct: 245 IDLAFEAGDIQGMTPDDIKAYIRFVADWRLRQLHLPEVYGVKENPLPWLQSLLSGVEHAN 304
Query: 338 FFETRVMEYQSGGT 351
FFE R EY T
Sbjct: 305 FFEARATEYSKAAT 318
>gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum NCTC 2916]
gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum NCTC 2916]
Length = 342
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 180/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ DI K
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPY 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ ++ N + + +I+
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEHLLERNKFIAGI--------YEKFNKEPEIHNFLRVIM 176
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ K+ +S +++YI RDE H ++I +K EN +
Sbjct: 177 ANYILEGIYFYSGFSFFYTLARQGKLTATSTIFKYINRDEVTHLVLFQNIIKELKNENSH 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E Q+ +E E + + ILGLN + + Y+++++N R+ IG+K
Sbjct: 237 IFTEELEEEFRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKP 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEINKHPMEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8421]
gi|419619300|ref|ZP_14152770.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 51494]
gi|419626974|ref|ZP_14159891.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|419633124|ref|ZP_14165565.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|419646652|ref|ZP_14178114.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 53161]
gi|419671755|ref|ZP_14201398.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|419673459|ref|ZP_14202926.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 51037]
gi|419678210|ref|ZP_14207275.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 87459]
gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8421]
gi|380602753|gb|EIB22995.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 51494]
gi|380607666|gb|EIB27522.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|380612837|gb|EIB32352.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|380623253|gb|EIB41968.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 53161]
gi|380649020|gb|EIB65804.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|380653695|gb|EIB70099.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 51037]
gi|380661304|gb|EIB77210.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 87459]
Length = 340
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 164/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTVGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|412991446|emb|CCO16291.1| Ribonucleoside-diphosphate reductase small chain, putative
[Bathycoccus prasinos]
Length = 330
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 164/326 (50%), Gaps = 29/326 (8%)
Query: 29 NGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
+G D L P KY+ W+ Y + A+ W +E+++Q D++ W+ LT +E+ +
Sbjct: 15 DGGNDRFVLFPLKYDAVWEMYKKAQASFWTAEEVDLQDDMKHWEK---LTADEKHFISHV 71
Query: 89 LGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE- 147
L FF+ +D + N+ + + I PE R + Q E IH+ Y +++ D +E
Sbjct: 72 LAFFAASDGIVLENLGVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLIDQYIKDPVEK 131
Query: 148 --IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFY 205
+FNA I ++ K ++ + +ID + + L+ FAC+ EG+FF
Sbjct: 132 TRLFNAVDTIPCVQKKAQWALKWID-------------GSESFAERLVAFACV-EGIFFS 177
Query: 206 VGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIE 265
F I L ++ M G + + I RDE +H +F L+ T+ P +++
Sbjct: 178 GSFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFAC-LLYTMLNNTPGE------EKLR 230
Query: 266 QLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPW 325
++ +A+E+E + D +P ++G+N + Y+ ++A+ + Q+G + + NPF W
Sbjct: 231 KIVTEAVEIEKEFVCDALPCALVGMNADMMRDYIEYVADHLLSQLGFAKEYD-TANPFDW 289
Query: 326 MSEMIHIKKESNFFETRVMEYQSGGT 351
M E+I ++ ++NFFE RV EYQ G
Sbjct: 290 M-ELISLQGKTNFFEKRVGEYQKSGV 314
>gi|419688628|ref|ZP_14216948.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1854]
gi|380665144|gb|EIB80722.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 1854]
Length = 340
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 164/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTVGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTNDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|419644106|ref|ZP_14175695.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9081]
gi|419652152|ref|ZP_14183235.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-894]
gi|380622756|gb|EIB41496.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni LMG 9081]
gi|380630197|gb|EIB48440.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 2008-894]
Length = 340
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 164/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTVGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|338707758|ref|YP_004661959.1| ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294562|gb|AEI37669.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 345
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 163/320 (50%), Gaps = 20/320 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L+ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAFEFWQRQQQVHWLPEEVPLGEDCRDWAQ--KLSNHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y I P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYFDKYSRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPEAE-YSAFLQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F + +D+ + ++L + EGL + F ++ R
Sbjct: 128 MKDKHDYLSTF------------DVGSDEDIARTLAMMGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L +T E L T ++I + K + +E
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGIIRLFHTFCQERQCL-TKAVKEDILDICQKTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+ I+ E +P PW++ +++ + +
Sbjct: 235 FIDLVFEMGPVEGMTPKEIKKYIRYIADWRLNQLGLSPIYMIEEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DWE 355
NFFETR EY T DW+
Sbjct: 295 NFFETRSTEYSKAATKGDWQ 314
>gi|384135232|ref|YP_005517946.1| ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289317|gb|AEJ43427.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 345
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 177/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+T ++ +L KY WA+ Y + N W+P+EI + D + L+E+ERR
Sbjct: 20 RRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQYD---LLSEDERR 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-- 141
+ L F DSL +N+ +ITAPE L AF+EA+H+ +Y Y+++S+
Sbjct: 77 SYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSVVN 135
Query: 142 GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+I+N + + +++F+ TDL + D+ L+K+ IV I+EG
Sbjct: 136 PATRDQIYNEWRNDDHLLRRNQFI-------TDLFEEFIENPTDRNLMKT-IVANYILEG 187
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF LGRQ KM+G+ ++I RDE H +L + I ENP + T +
Sbjct: 188 VYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIIRENPGIVTPDME 247
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+E ++ A++ E + + I+GL +Y++++AN R++ + + ++P +
Sbjct: 248 EEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLNLPVLYPEIKE 307
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
+P PWM I +++FFE RV Y G L+W+
Sbjct: 308 HPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 343
>gi|222824493|ref|YP_002576067.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
lari RM2100]
gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
lari RM2100]
Length = 340
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 176/346 (50%), Gaps = 15/346 (4%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
N+K+ S E +N ++++ NG+ + KY WA + AN W P+E++
Sbjct: 2 NRKRIYNPKSNETLN--DRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
+D ++ LT E+R+ + DS NN+ +ITAPE L RQA+
Sbjct: 60 KDALDYR--CNLTVAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAY 117
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
EEA H+ +Y +VE++ + I+ +++R+K++F+ + L +D
Sbjct: 118 EEANHSKSYAVMVEAICENTDLIYEMEKHDETLREKNDFISSIYEEL-------AGEVDD 170
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
KLL +++ I+EG++FY GF I AL R KM+GS+++ ++I RDE H ++I
Sbjct: 171 NKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMI 229
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
N+++ E +L+ +I +F KA ELE + + I+G + Y+ ++ +
Sbjct: 230 NSVRKERADLFNDTNVSKIYDMFKKAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQ 289
Query: 306 RMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
R+ I + +I+ ++P W+ + ++SNFFE++V Y G
Sbjct: 290 RLIAINLDKIYNV-KHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS 334
>gi|373954256|ref|ZP_09614216.1| ribonucleotide reductase [Mucilaginibacter paludis DSM 18603]
gi|373890856|gb|EHQ26753.1| ribonucleotide reductase [Mucilaginibacter paludis DSM 18603]
Length = 343
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 176/353 (49%), Gaps = 34/353 (9%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
+N K K K+N+ R+++ N+ ++ + D ++P Y W+ Y A+ W +EI++
Sbjct: 7 INTKYK--KVNTVTRMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEIDL 64
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
D++ W N L + ER + L FF+ +D + N+ + + PE R + Q
Sbjct: 65 SDDMKDWNN---LNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQI 121
Query: 125 FEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181
E IH+ Y ++++ D E +F+A + ++ K E+ + +I+
Sbjct: 122 MMENIHSETYALLIDTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIE----------- 170
Query: 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
+ + L+ FA + EG+FF F I L ++ M G + + I RDE MHC F
Sbjct: 171 ---NGTFAERLVAFAAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCEFA 226
Query: 242 IDLINTIKMENPNLWTTEFCKE-IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLR 300
L + + + + KE + + A+E+E + D +P ++G+N K Y+
Sbjct: 227 CLLYSML--------SNKLSKEAVTTIIADAVEIEKEFVTDALPVNLIGMNAKLMSQYIE 278
Query: 301 FIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLD 353
F+A+ ++++G +++ + NPF +M EMI ++ ++NFFE RV +YQ G L+
Sbjct: 279 FVADRWLQELGYDKLY-HATNPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLN 329
>gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
15579]
gi|187772230|gb|EDU36032.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
sporogenes ATCC 15579]
Length = 342
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 181/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ D++ +
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDVKQFP---Y 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ ++ N + + +I+
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEQLLERNKFIAGI--------YEKFNKEPEIYNFLRVIM 176
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K ENPN
Sbjct: 177 ANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKSENPN 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E ++ +E E + + ILGLN + Y+++++N R+ IG+K
Sbjct: 237 IFTEELEEEFREMMRMGVEHEIKWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIGLKP 296
Query: 315 IFP-YERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++P ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYPEINKHPMEWIDSFSKLNSTKTDFFEAKVTNYTKAAVFDFD 339
>gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans
ISDg]
gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans
ISDg]
Length = 342
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 179/335 (53%), Gaps = 19/335 (5%)
Query: 27 IINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
+I G+T ++ + KY+WA Y + N W+P+EI++Q D+ K LT+ ER
Sbjct: 18 LIKGNTTNLREWNRIKYDWARLIYRTMLNNFWIPEEISLQEDV---KQFPYLTDGERNAF 74
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG--L 143
+ + F + DS+ + N+ R+ITAPE L QAF+E IH +Y YI++++ +
Sbjct: 75 DKIIAFLNFLDSIQSENLP-NISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPV 133
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA-CIMEGL 202
I++ + E K + ++++F+ +D +D+ ++ +VFA I+EG+
Sbjct: 134 TRDRIYDIWREDKYLLERNKFIANIYQRFSD-------EPSDENFVR--VVFANYILEGI 184
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
+FY GF L RQ KM +S +++YI RDE H +++ +++E ++T +
Sbjct: 185 YFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVLFQNIMKELRVEQKEMFTKGLEE 244
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN 321
E+ ++ +E E + + ILG+N + Y+++++N R++ +G++ ++P ++
Sbjct: 245 ELREMMRTGVEHEIAWGQYVTDNQILGINNELIDQYIKYLSNQRLRAVGLEILYPEITKH 304
Query: 322 PFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
P W+ +I +++FFE +V Y D++
Sbjct: 305 PMEWIESFSNINSTKTDFFEAKVTNYTKAAVFDFD 339
>gi|414089693|ref|YP_006989840.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrSwift]
gi|408731982|gb|AFU88425.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrSwift]
Length = 477
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 39/342 (11%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ Y + A HW+P E M +DI+ W LT +E+ L+ + FF+ AD
Sbjct: 12 PFVYPWAYEAYKTMQAMHWLPHEAPMDQDIQDWNE--KLTPDEKSLLTQLFRFFTQADVD 69
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A PE R L EA H AY ++++LGL E+E F A+ + +++
Sbjct: 70 VARGYFEKYGPRFPHPEVRMMLGAFIAAEANHIDAYSTLIDTLGLPEVE-FRAFLDYEAM 128
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
R+K E++ +GN+ D L+ + VF+ EG+ + F +++ R+N
Sbjct: 129 REKHEYM---------FNRDSGNSIAD--LMVEIAVFSAFGEGMQLFSSFALLMSFQRRN 177
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
+M G + + ++ +RDES H I L++ + E+P W E K I ++LE +
Sbjct: 178 RMKGMTTIVEWSIRDESHHVESMIKLLHELIKEHPRAWNDETKKRIYDACRAMVDLEDAF 237
Query: 279 AE----------DTMPKG---------------ILGLNVKTFKSYLRFIANCRMKQIGIK 313
+ + P I G+ + K Y+R+IA+ R+ Q+G+K
Sbjct: 238 IDQAFAIAPDMAEAKPAAKNRAERRSGKFRKLQIEGVTPEDTKQYIRYIADRRLLQLGLK 297
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ + NPF W+ +++ +NFFE R EY G WE
Sbjct: 298 PNYGVKDNPFDWLDWIMNAPTHTNFFEQRSTEYGKGEIPGWE 339
>gi|414089340|ref|YP_006989492.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrKarma]
gi|408731184|gb|AFU87629.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrKarma]
Length = 477
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 39/342 (11%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ Y + A HW+P E M +DI+ W LT +E+ L+ + FF+ AD
Sbjct: 12 PFVYPWAYEAYKTMQAMHWLPHEAPMDQDIQDWNE--KLTPDEKSLLTQLFRFFTQADVD 69
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A PE R L EA H AY ++++LGL E+E F A+ + +++
Sbjct: 70 VARGYFEKYGPRFPHPEVRMMLGAFIAAEANHIDAYSTLIDTLGLPEVE-FRAFLDYEAM 128
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
R+K E++ +GN+ D L+ + VF+ EG+ + F +++ R+N
Sbjct: 129 REKHEYM---------FNRDSGNSIAD--LMVDIAVFSAFGEGMQLFSSFALLMSFQRRN 177
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
+M G + + ++ +RDES H I L++ + E+P W E K I ++LE +
Sbjct: 178 RMKGMTTIVEWSIRDESHHVESMIKLLHELIKEHPRSWNDETKKRIYDACRAMVDLEDAF 237
Query: 279 AE----------DTMPKG---------------ILGLNVKTFKSYLRFIANCRMKQIGIK 313
+ + P I G+ + K Y+R+IA+ R+ Q+G+K
Sbjct: 238 IDQAFAIAPDMAEAKPAAKNRAERRSGKFRKLQIEGVTPEDTKQYIRYIADRRLLQLGLK 297
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ + NPF W+ +++ +NFFE R EY G WE
Sbjct: 298 PNYGVKDNPFDWLDWIMNAPTHTNFFEQRSTEYGKGEIPGWE 339
>gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. doylei 269.97]
gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. doylei 269.97]
Length = 340
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 163/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTAGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN++ E P+L+ E +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVHKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +++ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|404372597|ref|ZP_10977892.1| hypothetical protein CSBG_00093 [Clostridium sp. 7_2_43FAA]
gi|226911266|gb|EEH96467.1| hypothetical protein CSBG_00093 [Clostridium sp. 7_2_43FAA]
Length = 344
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 180/345 (52%), Gaps = 21/345 (6%)
Query: 15 NSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
N F K++ING+T ++N KY W D Y + N W+P+EIN+ +D+ K+
Sbjct: 10 NEFGDTETSKKRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDL---KD 66
Query: 74 PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
LT +ER + L F DS+ N+ +ITA E L QAF+EA+H+ +
Sbjct: 67 YNKLTNDERTAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQAFQEAVHSQS 125
Query: 134 YQYIVESLGLDEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191
Y Y+++++ E EI + + K + ++++F+ + F T+ + L+K+
Sbjct: 126 YSYMLDTICSPEKRNEILYQWKDDKILLERNKFIGELYN-----NFLEAPTQ--ENLIKT 178
Query: 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME 251
++ I+EG++FY GF+ L R KM GS++ +YI RDE+ H +++ +++E
Sbjct: 179 IMA-NYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNILKELQLE 237
Query: 252 NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIG 311
P ++T E +++++ A+E E + + I G+N Y++++ N RMK IG
Sbjct: 238 QPEIFTDEVKNQLKEMMKTAVEHEISWGNYVIGDNIQGINKNLINDYIKYLGNLRMKAIG 297
Query: 312 IKQIFP-YERNPFPW---MSEMIHIKKESNFFETRVMEYQSGGTL 352
+ I+ ++ NP W +S+ +K ++FFE + Y G L
Sbjct: 298 LDAIYEGHDNNPAAWVDILSDANSVK--TDFFEAKSTAYAKAGAL 340
>gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas
wittichii RW1]
gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1]
Length = 350
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 159/315 (50%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W LT+ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + ++L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLSTF------------GVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC + L + E L T +I + K + +E
Sbjct: 176 NKMKGMGQIVTWSIRDETLHCEGIVRLFHAFVKERDCL-TASVKDDILDMCQKTVRIEDA 234
Query: 278 YAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+K I+ E +P PW++ +++ + +
Sbjct: 235 FIDLVFEMGPVNGMTPKDIKKYVRYIADWRLGQLGLKPIYMIEDHPLPWLAPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY T
Sbjct: 295 NFFETRATEYSKAAT 309
>gi|414087824|ref|YP_006988007.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage phiCbK]
gi|398256710|gb|AFO71724.1| ribonucleoside-diphosphate reductase beta (small) subunit
[Caulobacter phage phiCbK]
gi|408730496|gb|AFU86943.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage phiCbK]
Length = 477
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 39/342 (11%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ Y + A HW+P E M +DI+ W LT +E+ L+ + FF+ AD
Sbjct: 12 PFVYPWAYEAYKTMQAMHWLPHEAPMDQDIQDWNE--KLTPDEKSLLTQLFRFFTQADVD 69
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A PE R L EA H AY ++++LGL E+E F A+ + +++
Sbjct: 70 VARGYFEKYGPRFPHPEVRMMLGAFIAAEANHIDAYSTLIDTLGLPEVE-FRAFLDYEAM 128
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
R+K E++ +GN+ D L+ + VF+ EG+ + F +++ R+N
Sbjct: 129 REKHEYM---------FNRDSGNSIAD--LMVDIAVFSAFGEGMQLFSSFALLMSFQRRN 177
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
+M G + + ++ +RDES H I L++ + E+P W E K I ++LE +
Sbjct: 178 RMKGMTTIVEWSIRDESHHVESMIKLLHELIKEHPRSWNDETKKRIYDACRAMVDLEDAF 237
Query: 279 AE----------DTMPKG---------------ILGLNVKTFKSYLRFIANCRMKQIGIK 313
+ + P I G+ + K Y+R+IA+ R+ Q+G+K
Sbjct: 238 IDQAFAIAPDMSEAKPAAKNRAERRSGKFRKLQIEGVTPEDTKQYIRYIADRRLLQLGLK 297
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ + NPF W+ +++ +NFFE R EY G WE
Sbjct: 298 PNYGVKDNPFDWLDWIMNAPTHTNFFEQRSTEYGKGEIPGWE 339
>gi|419589103|ref|ZP_14124912.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 317/04]
gi|380568400|gb|EIA90871.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 317/04]
Length = 340
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 163/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTAGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNENNINKIYDMFKKAGDLEVKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +I+ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLVAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
coli RM2228]
gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
coli JV20]
gi|419537136|ref|ZP_14076599.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 111-3]
gi|419538449|ref|ZP_14077805.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 90-3]
gi|419539924|ref|ZP_14079169.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli Z163]
gi|419542094|ref|ZP_14081226.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2548]
gi|419544491|ref|ZP_14083448.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2553]
gi|419546768|ref|ZP_14085515.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2680]
gi|419548395|ref|ZP_14087020.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2685]
gi|419549925|ref|ZP_14088448.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2688]
gi|419551861|ref|ZP_14090187.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2692]
gi|419553804|ref|ZP_14091959.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2698]
gi|419557158|ref|ZP_14095113.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 84-2]
gi|419558385|ref|ZP_14096252.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 80352]
gi|419559888|ref|ZP_14097540.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 86119]
gi|419561820|ref|ZP_14099349.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1091]
gi|419564659|ref|ZP_14102036.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1098]
gi|419566505|ref|ZP_14103763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1148]
gi|419567511|ref|ZP_14104668.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1417]
gi|419573255|ref|ZP_14110063.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1891]
gi|419575837|ref|ZP_14112515.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1909]
gi|419578183|ref|ZP_14114710.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 59-2]
gi|419580119|ref|ZP_14116500.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1948]
gi|419581486|ref|ZP_14117785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1957]
gi|419583701|ref|ZP_14119872.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1961]
gi|419585127|ref|ZP_14121189.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 202/04]
gi|419587186|ref|ZP_14123132.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 67-8]
gi|419590991|ref|ZP_14126351.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 37/05]
gi|419593369|ref|ZP_14128592.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 9854]
gi|419595419|ref|ZP_14130521.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23336]
gi|419596468|ref|ZP_14131472.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23341]
gi|419598487|ref|ZP_14133368.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23342]
gi|419600430|ref|ZP_14135188.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23344]
gi|419603114|ref|ZP_14137676.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 151-9]
gi|419605023|ref|ZP_14139476.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 9853]
gi|419607304|ref|ZP_14141637.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 9860]
gi|419608991|ref|ZP_14143166.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H6]
gi|419611275|ref|ZP_14145314.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H8]
gi|419613356|ref|ZP_14147203.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H9]
gi|419614425|ref|ZP_14148209.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H56]
gi|419616755|ref|ZP_14150393.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli Z156]
gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
coli RM2228]
gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
coli JV20]
gi|380515856|gb|EIA42004.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 111-3]
gi|380517922|gb|EIA44027.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 90-3]
gi|380518341|gb|EIA44438.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli Z163]
gi|380521838|gb|EIA47549.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2680]
gi|380523935|gb|EIA49566.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2548]
gi|380525145|gb|EIA50696.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2553]
gi|380527469|gb|EIA52845.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2685]
gi|380531882|gb|EIA56888.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2688]
gi|380532994|gb|EIA57955.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2692]
gi|380533666|gb|EIA58582.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 2698]
gi|380533862|gb|EIA58735.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 84-2]
gi|380537804|gb|EIA62342.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 86119]
gi|380539441|gb|EIA63812.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 80352]
gi|380541839|gb|EIA66086.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1098]
gi|380542733|gb|EIA66962.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1091]
gi|380546440|gb|EIA70389.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1148]
gi|380548194|gb|EIA72104.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1417]
gi|380551993|gb|EIA75564.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1891]
gi|380552803|gb|EIA76352.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1909]
gi|380555510|gb|EIA78820.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1948]
gi|380555557|gb|EIA78866.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 59-2]
gi|380559446|gb|EIA82602.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1957]
gi|380562320|gb|EIA85197.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 1961]
gi|380562685|gb|EIA85538.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 202/04]
gi|380565224|gb|EIA87984.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 67-8]
gi|380569351|gb|EIA91795.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 37/05]
gi|380570957|gb|EIA93370.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 9854]
gi|380573632|gb|EIA95771.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23336]
gi|380576145|gb|EIA98204.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23341]
gi|380577176|gb|EIA99206.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23342]
gi|380578907|gb|EIB00724.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 9853]
gi|380579617|gb|EIB01404.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 151-9]
gi|380583018|gb|EIB04604.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 23344]
gi|380584656|gb|EIB06065.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H6]
gi|380585157|gb|EIB06523.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli LMG 9860]
gi|380588141|gb|EIB09286.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H9]
gi|380588454|gb|EIB09571.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H8]
gi|380592783|gb|EIB13644.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli H56]
gi|380595015|gb|EIB15777.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli Z156]
Length = 340
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 163/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTAGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E P+L+ +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNENNINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +I+ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLVAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
Length = 350
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 159/315 (50%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + K+L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLQQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC + L + E L T +I + K + +E
Sbjct: 176 NKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ +++ + +
Sbjct: 235 FVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY T
Sbjct: 295 NFFETRSTEYSKAAT 309
>gi|340750531|ref|ZP_08687371.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
mortiferum ATCC 9817]
gi|340562412|gb|EEO35205.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
mortiferum ATCC 9817]
Length = 344
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 183/358 (51%), Gaps = 26/358 (7%)
Query: 7 NKKKTLKINSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK + + +N+ ++II G+ T++ L KY WA Y + N W+P++I++
Sbjct: 2 DRKKLFNPSGIDSLNE--RKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKIDLT 59
Query: 66 RDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAF 125
+D + N LT E+ L F DS+ NNI +ITAPE L Q F
Sbjct: 60 QDRVDYNN---LTNYEKEAYDGILSFLIFLDSIQTNNIP-NISDYITAPEINLILSIQTF 115
Query: 126 EEAIHTHAYQYIVESLGLDELE--IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183
+EAIH+ +YQYI+ES+ E I++ + E K + +++ ++ D
Sbjct: 116 QEAIHSQSYQYIIESILPKETRNYIYDKWREDKILFERNRYIAEIYQNFLD--------N 167
Query: 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
D K +IV ++E ++FY GF L +N+M+G+S++ + I RDE H
Sbjct: 168 PDDKNFARVIVADYLLESIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQQ 227
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
+I ++ ENPN + I ++F KA+E E + + ILG+ KT +SY +++A
Sbjct: 228 MIKEVQNENPNFFDENI---IYEMFEKAVEQEISWTNHIIGGNILGITEKTTESYTKWLA 284
Query: 304 NCRMKQIGIKQIFP-YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
N R+K IG++ ++ YE+NP+ + + E +NFFE V Y +++ W+
Sbjct: 285 NERLKSIGLQPLYEGYEKNPYKHLERFADTEGEGNVKANFFEGTVTSYNMSSSVEGWD 342
>gi|291336894|gb|ADD96423.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
Length = 147
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 97/143 (67%)
Query: 211 ILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270
+LALGRQNK+ G S+ +Y LRDES+H NFG LINT+K + P +WT +F +E + K
Sbjct: 2 LLALGRQNKLPGLSDQIRYTLRDESLHINFGTYLINTLKEQYPTIWTKKFEEETIEHIKK 61
Query: 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMI 330
A++LE YA D +P+GILGLN F Y+ +I N R++ IG+ F + NPFPW+SE++
Sbjct: 62 AVQLEINYAHDVLPRGILGLNADMFVDYMHYIGNRRLEGIGLDYRFESDTNPFPWLSEVV 121
Query: 331 HIKKESNFFETRVMEYQSGGTLD 353
+NFFE +V +YQ+ G L+
Sbjct: 122 DTGAMTNFFERKVKDYQNSGVLE 144
>gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
japonicum UT26S]
gi|390168974|ref|ZP_10220921.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobium
indicum B90A]
gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
japonicum UT26S]
gi|389588432|gb|EIM66480.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobium
indicum B90A]
Length = 351
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 159/315 (50%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F D+ + K+L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLQQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC + L + E L T +I + K + +E
Sbjct: 176 NKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ +++ + +
Sbjct: 235 FVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY T
Sbjct: 295 NFFETRATEYSKAAT 309
>gi|402827287|ref|ZP_10876378.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas sp.
LH128]
gi|402259189|gb|EJU09461.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas sp.
LH128]
Length = 349
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 158/319 (49%), Gaps = 20/319 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D W I ++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDYWKIQQQVHWLPEEVPLGEDCRDWVQNI--SDHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E + A+ E
Sbjct: 69 EVQDCYHEKYARVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLEYSE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F ND+ + ++L +F EG+ + F ++ R
Sbjct: 128 LKDKHDYLQKF------------GVDNDEDIARTLAMFGGFTEGVQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L + E L T +I I LE
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGIIKLFHAFCEERGCL-TKAVKDDIADQCQTTIRLEDN 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G+K I+ E +P PW+ +++ + +
Sbjct: 235 FIDLAFELGPVPGMTPKDIKKYIRYIADWRLGQLGMKPIYLIEDHPLPWLQPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DW 354
NFFETR EY G T DW
Sbjct: 295 NFFETRSTEYSKGATRGDW 313
>gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
acetobutylicum ATCC 824]
gi|337738480|ref|YP_004637927.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
acetobutylicum DSM 1731]
gi|384459990|ref|YP_005672410.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
acetobutylicum EA 2018]
gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum
ATCC 824]
gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
acetobutylicum EA 2018]
gi|336293136|gb|AEI34270.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
acetobutylicum DSM 1731]
Length = 344
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 171/332 (51%), Gaps = 15/332 (4%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K+I+NG+T ++N KY W D Y N W+P+EIN+ +D+ K+ LT+ ER
Sbjct: 20 KKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDL---KDYGKLTDNERT 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYR-HITAPECRQYLLRQAFEEAIHTHAYQYIVESLG 142
+ L F DS+ N LG +ITA E L QAF+EA+H+ +Y Y+++++
Sbjct: 77 AYDKILSFLIFLDSVQTAN--LGNINDYITASEVNLCLTIQAFQEAVHSQSYSYMLDTIC 134
Query: 143 LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
E +EI DE L+ + D+ +D+ LK+ I+ ++EG+
Sbjct: 135 SPE-----KRNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPSDENFLKA-IMGNYVLEGI 188
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
+FY GF+ L R KM GS++ +YI RDE+ H ++I ++ E P+++T E K
Sbjct: 189 YFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQKEEPDMFTEEIKK 248
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN 321
E++ + +E E + + I G+N K + Y++++ N R++ IG + I+ Y+ N
Sbjct: 249 ELKDMVKTGVENEITWGHYVIGDNIQGINKKLIEDYIKYLGNRRLEAIGFEPIYEGYDEN 308
Query: 322 PFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
P W+ +++FFE + Y TL
Sbjct: 309 PALWVDIYADANSVKTDFFEAKSTAYAKASTL 340
>gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica
ATCC 49814]
gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814]
Length = 345
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 160/323 (49%), Gaps = 28/323 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D + W L ++ER L+ + FF+ +D
Sbjct: 21 PFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWAGK--LNDKERNLLTQIFRFFTQSDVE 78
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N + E R L + E +H AY ++E++G+ + E F+A+ E + +
Sbjct: 79 VGANYMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLETIGMPDSE-FSAFMEYEEM 137
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
K ++L F + + +L S+ VF EGL + F ++ R N
Sbjct: 138 AAKHDYLGKF------------SVDTEADILTSMAVFGGFTEGLQLFASFAMLMNFPRFN 185
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT------EFCKEIEQLFLKAI 272
KM G ++ + +RDES+HC + + +T E L T + C+ + +L K I
Sbjct: 186 KMKGMGQIVSWSVRDESLHCEGMMKMFHTYAEETGALTKTVKDDITDCCQTVVKLEDKFI 245
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+L + E + G+ + K+Y+R+IA+ R+KQ+ + ++ + +P PW++E+++
Sbjct: 246 DLAFEAGE------VEGMTPEDIKNYIRYIADWRLKQLKLDPVYGVDEHPIPWLTEILNG 299
Query: 333 KKESNFFETRVMEYQSGGTL-DW 354
+ +NFFE R EY G T DW
Sbjct: 300 VEHANFFEARATEYSKGATAGDW 322
>gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius LAA1]
Length = 345
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 177/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+T ++ +L KY WA+ Y + N W+P+EI + D + L+++ERR
Sbjct: 20 RRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQYD---LLSDDERR 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-- 141
+ L F DSL +N+ +ITAPE L AF+EA+H+ +Y Y+++S+
Sbjct: 77 SYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSVVN 135
Query: 142 GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+I+N + + +++F+ TDL + D+ L+K+ IV I+EG
Sbjct: 136 PATRDQIYNEWRNDDHLLRRNQFI-------TDLFEEFIENPTDRNLMKT-IVANYILEG 187
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF LGRQ KM+G+ ++I RDE H +L + I ENP + T +
Sbjct: 188 VYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIVRENPGIVTPDME 247
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+E ++ A++ E + + I+GL +Y++++AN R++ + + ++P +
Sbjct: 248 EEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLNLPILYPEIKE 307
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
+P PWM I +++FFE RV Y G L+W+
Sbjct: 308 HPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 343
>gi|452753083|ref|ZP_21952820.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [alpha
proteobacterium JLT2015]
gi|451959531|gb|EMD81950.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [alpha
proteobacterium JLT2015]
Length = 345
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 159/315 (50%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D W L+ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLSPHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++ + E +
Sbjct: 69 EVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSMFMEYEE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+ DK ++L F +D+ + ++L +F EGL + F ++ R
Sbjct: 128 MADKHDYLQQF------------GVDSDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC GI + +E T ++I + K + LE
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCE-GITRLFHAFIEERQCLTKAVKEDIVDICQKTVRLEDA 234
Query: 278 YAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G++ K K Y+R+IA+ R+ Q+G+K I+ E +P PW++ +++ + +
Sbjct: 235 FIDLAFEMGPVNGMSPKEIKKYIRYIADWRLGQLGLKPIYLIEEHPLPWLTPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY T
Sbjct: 295 NFFETRATEYSKAAT 309
>gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas
sp. S17]
gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas
sp. S17]
Length = 351
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 157/318 (49%), Gaps = 19/318 (5%)
Query: 36 QLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA 95
Q PF+Y WA++ + HW+P+E+ + D W LT+ ER L+ + FF+ A
Sbjct: 9 QYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQA 66
Query: 96 DSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHE 154
D + + Y + P E + L + E +H AY ++++++G+ E E + A+ E
Sbjct: 67 D-VEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLE 124
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
++DK ++L F ND+ + ++L +F EG+ + F ++
Sbjct: 125 YAEMKDKHDYLQKF------------GVDNDEDIARTLAMFGGFTEGVQLFASFAMLMNF 172
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
R NKM G ++ + +RDES+HC I L + E L T +I + L
Sbjct: 173 PRFNKMKGMGQIVTWSVRDESLHCEGIIQLFHAFTKERQCL-TKAVKDDIADQCQTTVRL 231
Query: 275 EYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
E + + G + G+ K K Y+R+IA+ R+ Q+G+K I+ + +P PW++ +++
Sbjct: 232 EDNFIDLAFEMGPVNGMTAKDIKKYIRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGV 291
Query: 334 KESNFFETRVMEYQSGGT 351
+ +NFFETR EY T
Sbjct: 292 EHANFFETRATEYSKAAT 309
>gi|414088617|ref|YP_006988790.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrMagneto]
gi|408730832|gb|AFU87278.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrMagneto]
Length = 477
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 39/342 (11%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ Y + A HW+P E M +DI+ W LT E+ L+ + FF+ AD
Sbjct: 12 PFVYPWAYEAYKTMQAMHWLPHEAPMDQDIQDWNE--KLTPNEKSLLTQLFRFFTQADVD 69
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A PE R L EA H AY ++++LGL E+E F A+ + +++
Sbjct: 70 VARGYFEKYGPRFPHPEVRMMLGAFIAAEANHIDAYSTLIDTLGLPEVE-FRAFLDYEAM 128
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
R+K E++ +GN+ D L+ + VF+ EG+ + F +++ R+N
Sbjct: 129 REKHEYM---------FNRDSGNSIAD--LMVDIAVFSAFGEGMQLFSSFALLMSFQRRN 177
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
+M G + + ++ +RDES H I L++ + E+P W E K I ++LE +
Sbjct: 178 RMKGMTTIVEWSIRDESHHVESMIKLLHELIKEHPRSWNDETKKRIYDACRAMVDLEDAF 237
Query: 279 AE----------DTMPKG---------------ILGLNVKTFKSYLRFIANCRMKQIGIK 313
+ + P I G+ + K Y+R+IA+ R+ Q+G+K
Sbjct: 238 IDQAFAIAPDMTEAKPAAKNRAERRSGKFRKLQIEGVTPEDTKQYIRYIADRRLLQLGLK 297
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ + NPF W+ +++ +NFFE R EY G WE
Sbjct: 298 PNYGVKDNPFDWLDWIMNAPTHTNFFEQRSTEYGKGEIPGWE 339
>gi|340753215|ref|ZP_08690005.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 2_1_31]
gi|422315582|ref|ZP_16397013.1| hypothetical protein FPOG_01860 [Fusobacterium periodonticum D10]
gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 2_1_31]
gi|404592266|gb|EKA94129.1| hypothetical protein FPOG_01860 [Fusobacterium periodonticum D10]
Length = 344
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 177/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTLPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + P ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDYPEFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ ++
Sbjct: 242 AE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLYS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
periodonticum ATCC 33693]
gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
periodonticum ATCC 33693]
Length = 348
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 177/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 22 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTLPERE 78
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAIHSQSYQYIIESILP 137
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 138 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 185
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + P ++
Sbjct: 186 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDYPEFFS 245
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ ++
Sbjct: 246 AE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLYS 302
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 303 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_36A2]
gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_36A2]
Length = 344
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 177/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L + WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + PN ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIKNDFPNFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ +F
Sbjct: 242 AE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|393770728|ref|ZP_10359206.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
sp. Rr 2-17]
gi|392723835|gb|EIZ81222.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
sp. Rr 2-17]
Length = 349
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 158/321 (49%), Gaps = 24/321 (7%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D W I +E ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDFWKRQQQVHWLPEEVPLGEDCRDWAQKI--SEHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE--IFNAYHEI 155
+ Y + P E + L + E +H AY ++++++G+ E E +F Y E+
Sbjct: 69 EVQDCYHDKYARVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESEYGMFLEYEEL 128
Query: 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
K+ D T +D+ + ++L +F EGL + F ++
Sbjct: 129 KAKHDY---------------MHTFGVDSDEDIARTLAMFGGFTEGLQLFASFAMLMNFP 173
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
R NKM G ++ + +RDES+HC L +T E L T ++I K + LE
Sbjct: 174 RFNKMKGMGQIVSWSVRDESLHCEGITKLFHTFVHERGCL-TKAVKEDIIDCCQKTVRLE 232
Query: 276 YYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334
+ + G + G++ K K Y+R+IA+ R+ Q+G+ ++ E +P PW++ +++ +
Sbjct: 233 DAFIDLAFEMGPVPGMSAKDIKRYIRYIADWRLGQLGLPPVYMIEDHPLPWLTPLLNGVE 292
Query: 335 ESNFFETRVMEYQSGGTL-DW 354
+NFFETR EY G T DW
Sbjct: 293 HANFFETRSTEYSKGATRGDW 313
>gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
aromaticivorans DSM 12444]
gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium
aromaticivorans DSM 12444]
Length = 351
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 161/323 (49%), Gaps = 20/323 (6%)
Query: 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94
N PF+Y WA++ + HWMP+E+ + D W I +E ER L+ + FF+
Sbjct: 8 NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQKI--SEHERNLLTQIFRFFTQ 65
Query: 95 ADSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYH 153
AD + N Y + P E + L + E +H AY ++++++G+ E E + +
Sbjct: 66 AD-VEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
E + ++ K ++L +T + D+ + ++L +F EGL + F ++
Sbjct: 124 EYEELKAKHDYL------------QTFGVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
R NKM G ++ + +RDES+HC L + E L T ++I K +
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGITRLFHAFVKERGCL-TKAVKEDIIDCCQKTVR 230
Query: 274 LEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
LE + + +G + G++ K K Y+R+IA+ R+ Q+G+ I+ E +P PW++ +++
Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLSQLGLPAIYMIEDHPLPWLAPLLNG 290
Query: 333 KKESNFFETRVMEYQSGGTL-DW 354
+ +NFFETR EY T DW
Sbjct: 291 VEHANFFETRATEYSKAATKGDW 313
>gi|258511567|ref|YP_003185001.1| ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 369
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 177/336 (52%), Gaps = 17/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+T ++ +L KY WA+ Y + N W+P+EI + D + L+++ERR
Sbjct: 44 RRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQYD---LLSDDERR 100
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-- 141
+ L F DSL +N+ +ITAPE L AF+EA+H+ +Y Y+++S+
Sbjct: 101 SYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSVVN 159
Query: 142 GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
+I+N + + +++F+ TDL + D+ L+K+ IV I+EG
Sbjct: 160 PATRDQIYNEWRNDDHLLRRNQFI-------TDLFEEFIENPTDRNLMKT-IVANYILEG 211
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF LGRQ KM+G+ ++I RDE H +L + I ENP + T +
Sbjct: 212 VYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIIRENPGIVTPDME 271
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+E ++ A++ E + + I+GL +Y++++AN R++ + + ++P +
Sbjct: 272 EEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLNLPILYPEIKE 331
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
+P PWM I +++FFE RV Y G L+W+
Sbjct: 332 HPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 367
>gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 399
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 174/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 48 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 107
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +DS+ N+V + PE
Sbjct: 108 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDSIVNENLVENFSTEVQIPEA 165
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 166 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 221
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 222 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 272
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 273 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 324
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 325 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
thermodenitrificans NG80-2]
gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus
thermodenitrificans NG80-2]
gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
Length = 344
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 162/326 (49%), Gaps = 19/326 (5%)
Query: 27 IINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
+ING ++V Y WA+ +Y AN W P EINM +D++ + LT E+
Sbjct: 20 MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQFPQ---LTAREQDAF 76
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
+ +G + DS+ + +IT P ++ A +E IH H+Y Y++ SL
Sbjct: 77 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ E+F+ + ++R +++F+ T+ N + LL+S IVF I+EGLF
Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFV-------TNGYKAFAEKPNVENLLRS-IVFDVILEGLF 187
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L RQ KM+ +S + YI RDE +H + + + E P T E
Sbjct: 188 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 247
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
F+KA ELE +A + + I G+++ ++Y++F AN R Q+G + F Y NP
Sbjct: 248 ARSTFMKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 307
Query: 323 FPWMS--EMIHIKKESNFFETRVMEY 346
W+ E + + K S+FFE + +Y
Sbjct: 308 LRWIKAYEEVDLGK-SDFFEQKPRQY 332
>gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum Bf]
gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum Ba4 str. 657]
gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum Bf]
gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum Ba4 str. 657]
Length = 342
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 179/343 (52%), Gaps = 17/343 (4%)
Query: 18 ERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
E+ + + +ING+T ++ + KY+WA D Y + N W+P+EI++ DI K
Sbjct: 9 EKGQRGTESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPY 65
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
LT+ ER + + F + DS+ + N+ R+ITA E L Q F+E IH +Y Y
Sbjct: 66 LTDGERNAFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSY 124
Query: 137 IVESLG--LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIV 194
I++++ + +I++ + E + + ++++F+ ++ N + + +I+
Sbjct: 125 ILDTVTNPITRDKIYDQWREDEHLLERNKFIAGI--------YEKFNKEPEIHNFLRVIM 176
Query: 195 FACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254
I+EG++FY GF L RQ KM +S +++YI RDE H ++I +K EN +
Sbjct: 177 ANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSH 236
Query: 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQ 314
++T E +E Q+ +E E + + ILGLN + + Y+++++N R+ IG+K
Sbjct: 237 IFTEELEEEFRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKP 296
Query: 315 IF-PYERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLDWE 355
++ ++P W+ + +++FFE +V Y D++
Sbjct: 297 LYLEINKHPMEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|334139823|ref|YP_004533022.1| ribonucleoside-diphosphate reductase subunit beta [Novosphingobium
sp. PP1Y]
gi|359398752|ref|ZP_09191768.1| ribonucleoside-diphosphate reductase beta chain [Novosphingobium
pentaromativorans US6-1]
gi|333937846|emb|CCA91204.1| ribonucleoside-diphosphate reductase beta chain [Novosphingobium
sp. PP1Y]
gi|357599990|gb|EHJ61693.1| ribonucleoside-diphosphate reductase beta chain [Novosphingobium
pentaromativorans US6-1]
Length = 350
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 155/315 (49%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D W L+E ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYDYWKLQQQVHWLPEEVPLGEDCRDWAQK--LSEHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E + + E
Sbjct: 69 EVQDCYHDKYARVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFLEYAE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F +D+ + ++L +F EG+ + F ++ R
Sbjct: 128 LKDKHDYLQRF------------GVDSDEDIARTLAMFGGFTEGVQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC L + E L T ++I + LE
Sbjct: 176 NKMKGMGQIVSWSVRDESLHCEGITRLFHAFTKERDCL-TKAVKEDIADQCQTTVRLEDN 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+RFIA+ R+ Q+G+K I+ + +P PW+ +++ + +
Sbjct: 235 FIDLAFELGPVPGMTAKDIKKYIRFIADWRLGQLGLKPIYLIDEHPLPWLQPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY G T
Sbjct: 295 NFFETRATEYSKGAT 309
>gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis]
Length = 401
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 158/320 (49%), Gaps = 29/320 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY+ W+ Y + A+ W +EI++ +D+ W N + E ER + R L FF+ +D
Sbjct: 88 LFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWNN--RMNENERFFISRILAFFAASD 145
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + APE + + Q E IH+ Y ++++ D E +FNA
Sbjct: 146 GIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAIE 205
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I++K E+ I +I ++D L +V +EG+FF F I
Sbjct: 206 TIPQIKEKAEWAIRWI-------------QDDDALFGERLVAFAAVEGVFFSGSFAAIFW 252
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAI 272
L ++ M G + + I RDE +H +F L +K + NP + +E++ +A+
Sbjct: 253 LKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPNPEI--------VEKIITEAV 304
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E+E Y D +P +LG+N Y+ F+A+ + +G K+ F NPF +M E I +
Sbjct: 305 EIEKRYFMDALPVSLLGMNADLMNQYVEFVADRLLVALGNKKYFNV-TNPFDFM-ENISL 362
Query: 333 KKESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 363 AGKTNFFEKRVSDYQKAGVI 382
>gi|357976893|ref|ZP_09140864.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas sp.
KC8]
Length = 350
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D W L + ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLDQSERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + K
Sbjct: 69 EVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
++DK ++L F +D+ + ++L +F EGL + F ++ R
Sbjct: 128 MKDKHDYLSTF------------GVDSDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC I L + E N T +I K + LE
Sbjct: 176 NKMKGMGQIVTWSIRDETLHCEGIIRLFHAFVKER-NCLTPAVRDDILDQCQKTVRLEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+G K I+ + +P PW++ M++ + +
Sbjct: 235 FIDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGFKPIYMIDEHPLPWLAPMLNGVEHA 294
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY T
Sbjct: 295 NFFETRATEYSKAAT 309
>gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
hippei YIT 12066]
gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
hippei YIT 12066]
Length = 331
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 28/323 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA++ ++ S HW+ E+ M D++ WK + L + ER + + FF+ D
Sbjct: 22 PFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWK--MRLNDNERDFLTKVFRFFTQGDID 79
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
++ V PE R L A EA+H AY +++E++G+ + I+N + + +++
Sbjct: 80 VSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHLIETIGMPD-AIYNEFLQYEAM 138
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
K EF F ++ + + F+ EG+ + FV +L R
Sbjct: 139 AAKHEF------------FHGLRLNQNENIAAKMAAFSAFTEGMQLFSSFVMLLNFTRNG 186
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
M G ++ + + DE++H I L +NP LW + I + K +EL
Sbjct: 187 TMRGMGQIIAWSINDETLHTESMIKLFREYIEQNPQLWNDDLKSTIYSIAEKMVEL---- 242
Query: 279 AEDTMPKGILGLNV------KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
ED+ G+N + K Y+RFIA+ R+ +G+K IF ++NP PW+ M+ +
Sbjct: 243 -EDSFIDLAFGVNQMQKLAKEDVKKYIRFIADRRLSAMGMKAIFNEKKNPLPWVDAMLGV 301
Query: 333 KKESNFFETRVMEYQSGG-TLDW 354
+NFFE RV++Y G + DW
Sbjct: 302 -THTNFFENRVVDYAKGALSGDW 323
>gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 1_1_41FAA]
gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 1_1_41FAA]
Length = 344
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 176/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTLPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + P ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDYPEFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T + Y +++AN R+K +G++ ++
Sbjct: 242 AE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEVYTKWLANERLKSLGLEPLYS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
Length = 346
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 160/319 (50%), Gaps = 19/319 (5%)
Query: 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94
N PF+Y WA++ + HWMP+E+ + D W LTE ER L+ + FF+
Sbjct: 8 NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--NLTEHERNLLTQIFRFFTQ 65
Query: 95 ADSLAANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYH 153
AD + + Y + P E + L + E +H AY ++++++G+ E E ++A+
Sbjct: 66 AD-VEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ + + DK ++ F + D+ + ++L +F EGL + F ++
Sbjct: 124 DYEEMADKHNYMHQF------------SVDTDEDIARTLAMFGGFTEGLQLFASFAMLMN 171
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
R NKM G ++ + +RDE++HC I + +T E L T ++I + K +
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGIIKMFHTFCEERDCL-TKAVKEDIIDICQKTVR 230
Query: 274 LEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
LE + + G + G+ K K Y+R+IA+ R+ Q+ ++ I+ + +P PW+S +++
Sbjct: 231 LEDAFIDLAFEMGPVEGMTAKDIKKYIRYIADWRLGQLNLQPIYMIDEHPLPWLSPLLNG 290
Query: 333 KKESNFFETRVMEYQSGGT 351
+ +NFFE R EY G T
Sbjct: 291 VEHANFFEARATEYSKGAT 309
>gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 29/320 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KYN W Y + A+ W +EI++ +DI WKN +T+ ER + R L FF+ +D
Sbjct: 106 LFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWKN--RMTDNERFFISRVLAFFAASD 163
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + PE + + Q E IH+ Y +++S D E +FNA
Sbjct: 164 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPKEADFLFNAIE 223
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I+ K E+ + +I +D+ L +V +EG+FF F I
Sbjct: 224 NIPCIKKKAEWALRWI-------------ADDEALFAERLVAFAAVEGIFFSGSFASIFW 270
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI-KMENPNLWTTEFCKEIEQLFLKAI 272
L ++ M G + + I RDE +H +F L + + NP + +E++ +A+
Sbjct: 271 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNNRPNPAI--------VEKIITEAV 322
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+E Y D +P +LG+N Y+ F+A+ + +G K+++ NPF +M E I +
Sbjct: 323 TIEKEYFTDALPASLLGMNCDLMCQYVEFVADRLLVALGNKKVYNV-TNPFDFM-ENISL 380
Query: 333 KKESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 381 AGKTNFFEKRVSDYQKAGVM 400
>gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum]
Length = 335
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 156/320 (48%), Gaps = 32/320 (10%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY W+ Y + A+ W +EI++ D+ W+N L + ER +K L FF+ +D
Sbjct: 19 LFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWENK--LNDNERHFIKNVLAFFAASD 76
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GLDELEI-FNAYH 153
+ N+ + PE R + Q E IH+ Y ++++ DE ++ FNA
Sbjct: 77 GIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKNPDEKKVLFNAIE 136
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I ++ K ++ + +I N + + L+ FA + EG+FF F I
Sbjct: 137 TIPCVKKKADWALRWI-------------TNSKSFAERLVAFAAV-EGIFFSGSFCSIFW 182
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI--KMENPNLWTTEFCKEIEQLFLKA 271
L ++ M G + + I RDE +HC+F L N + K++ K IE + A
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYNKLNNKLD---------VKTIESIIRDA 233
Query: 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIH 331
+E E + D++P ++G+N + Y+ F A+ + +G K+I+ NPF WM EMI
Sbjct: 234 VECEKEFVTDSLPVDLIGMNSREMSKYIEFCADRLLVSLGYKKIYN-SANPFDWM-EMIS 291
Query: 332 IKKESNFFETRVMEYQSGGT 351
+ +++NFFE +V EY G
Sbjct: 292 LMRKANFFEGKVSEYAKAGV 311
>gi|449017028|dbj|BAM80430.1| ribonucleoside-diphosphate reductase beta chain [Cyanidioschyzon
merolae strain 10D]
Length = 484
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 171/354 (48%), Gaps = 29/354 (8%)
Query: 5 LNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINM 64
L ++K+ LKI + R + ++ ++ T+ L P +Y W Y + A+ W +E+++
Sbjct: 142 LVSRKELLKIREWLRTCEKSEPLLMASTNRFVLFPIRYPETWSFYKRAVASFWTVEEVDL 201
Query: 65 QRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
Q+D+ W LT E+ + L FF+ +D + N+ L + E R + + Q
Sbjct: 202 QQDLRDWSR---LTSGEKHFITYVLAFFAASDGIVNENLALRFSTEVQLSEARSFYMFQM 258
Query: 125 FEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGN 181
E IH+ Y ++++ + E +F A + +R K E+ + ++
Sbjct: 259 AMENIHSEMYSLLIDTFIKETTEKDRLFRAIDTLPCVRRKAEWALRWVG----------- 307
Query: 182 TKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFG 241
+D + LI FA + EG+FF F I L ++ M G + + I RDE +HC+F
Sbjct: 308 --SDASFAERLIAFAAV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 364
Query: 242 IDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRF 301
+ + ++ + P++ I + A+E E + + +P ++G+N + Y+ F
Sbjct: 365 CHVFHMLRYKPPDVL-------IRAIICDAVEQERAFVREALPVNLIGMNSTLMQQYIEF 417
Query: 302 IANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
A+ + + + ++ E NPF WM E+I + ++NFFE RV EYQ G + ++
Sbjct: 418 CADRLLVALHVDPVYRVE-NPFDWM-ELISLNGKTNFFERRVGEYQKAGVMTFQ 469
>gi|366992756|ref|XP_003676143.1| hypothetical protein NCAS_0D02000 [Naumovozyma castellii CBS 4309]
gi|342302009|emb|CCC69781.1| hypothetical protein NCAS_0D02000 [Naumovozyma castellii CBS 4309]
Length = 399
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 164/332 (49%), Gaps = 33/332 (9%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
++N D + L P KY+ W Y + A+ W +EI++ +D+ W N + ER +
Sbjct: 78 LLNADEDRHTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWNN--RMNPNERFFIS 135
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
R L FF+ +D + N+V + PE R + Q E IH+ Y ++++ D
Sbjct: 136 RVLAFFAASDGIVNENLVENFSAEVQVPEARAFYGFQIMIENIHSETYSLLIDTYIKDPK 195
Query: 147 E---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL--KSLIVFACIMEG 201
E +FNA I I++K E+ + +I ND + L + L+ FA I EG
Sbjct: 196 ESEFLFNAIETIPQIKEKAEWALRWI--------------NDAEALFAERLVAFAAI-EG 240
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEF 260
+FF F I L ++ M G + + I RDE +H +F L +K + +P+
Sbjct: 241 IFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLKHKVDPST----- 295
Query: 261 CKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER 320
+E++ ++A+E+E Y D +P +LG+N Y+ F+A+ + G ++ + E
Sbjct: 296 ---VERIIVEAVEIEKRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNEKYYKVE- 351
Query: 321 NPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|401625096|gb|EJS43121.1| rnr2p [Saccharomyces arboricola H-6]
Length = 399
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 31/340 (9%)
Query: 19 RINKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
R+ ++ K+ ++N + L P KY+ W Y + A+ W +EI++ +DI W N
Sbjct: 68 RLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--R 125
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
+ E ER + R L FF+ +D + N+V + PE + + Q E IH+ Y
Sbjct: 126 MNENERFFISRVLAFFAASDGIVNENLVENFSTEVQVPEAKSFYGFQIMIENIHSETYSL 185
Query: 137 IVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
++++ D E +FNA H I I +K E+ + +I D + L+
Sbjct: 186 LIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI------------QDADALFGERLV 233
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-N 252
FA I EG+FF F I L ++ M G + + I RDE +H +F L +K + +
Sbjct: 234 AFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD 292
Query: 253 PNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
P + +E++ +A+E+E Y D +P +LG+N Y+ F+A+ + G
Sbjct: 293 PAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGN 344
Query: 313 KQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 345 KKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|41019487|sp|P42521.2|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum]
gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
Length = 338
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 33/341 (9%)
Query: 18 ERINKIN---KQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNP 74
E INK + + I+ + D L P KY W Y + A+HW+ +EI++ D W+
Sbjct: 2 EEINKKDTFIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWE-- 59
Query: 75 IGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 134
LT+ ER + L FF+ +D + N+ + PE R + Q E IH+ Y
Sbjct: 60 YKLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETY 119
Query: 135 QYIVESLGLDEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKS 191
++E+ D+ ++FNA I I+ K E+ + +I+ + +
Sbjct: 120 SLLIETYIKDKQTKDKLFNAIETIPCIKKKAEWALRWIN-------------DSDSFAER 166
Query: 192 LIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME 251
L+ FA + EG+FF F I L ++ M G + + I RDE +HC+F L ++ +
Sbjct: 167 LVAFAAV-EGIFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRK 225
Query: 252 -NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQI 310
+P K IE++ A+E E + +++P ++G+N ++ Y+ F A+ + +
Sbjct: 226 LDP--------KVIEKMIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSL 277
Query: 311 GIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGT 351
G K+IF NPF WM EMI ++++SNFFE +V EY G
Sbjct: 278 GYKKIFN-SSNPFEWM-EMISLQRKSNFFEGKVAEYAKTGV 316
>gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata]
Length = 400
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 161/333 (48%), Gaps = 29/333 (8%)
Query: 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++ ++N D L P KY+ W Y + A+ W +EI++ +D+ W N L E ER
Sbjct: 75 DEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWNN--RLNENERF 132
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ R L FF+ +D + N+V PE + + Q E IH+ Y ++++
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSETYSLLIDTYIK 192
Query: 144 DELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIME 200
D E +FNA H I I +K E+ + +I N + L +V +E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWI-------------ANSEALFAERLVAFAAIE 239
Query: 201 GLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTE 259
G+FF F I L ++ M G + + I RDE +H +F L + + +P +
Sbjct: 240 GVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLNHKPDPEV---- 295
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
+E++ +A+E+E Y D +P +LG+N + Y+ F+A+ + G K+++ E
Sbjct: 296 ----VERIVTEAVEIEQRYFLDALPVALLGMNAQLMNQYVEFVADRLLVAFGNKKVYNVE 351
Query: 320 RNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 352 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421751799|ref|ZP_16188837.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
AS_713]
gi|421753653|ref|ZP_16190643.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
831]
gi|421757379|ref|ZP_16194260.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
80700103]
gi|421759238|ref|ZP_16196071.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
70102010]
gi|424674557|ref|ZP_18111474.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
70001275]
gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate
reductase beta subunit [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086526|gb|EKM86643.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
831]
gi|409086733|gb|EKM86847.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
AS_713]
gi|409090964|gb|EKM90969.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
70102010]
gi|409092645|gb|EKM92614.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
80700103]
gi|417434843|gb|EKT89782.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
70001275]
Length = 410
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + EF KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G I GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 327 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 387 FFENRVTEYEVAGLTGSWD 405
>gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis
alaskensis RB2256]
gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
RB2256]
Length = 354
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 159/319 (49%), Gaps = 20/319 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HW+P+E+ + D W I ++ ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQKI--SDHERNLLTQIFRFFTQAD-I 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E + + E
Sbjct: 69 EVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFLEYDE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K +++ F + D+ + ++L +F EGL + F ++ R
Sbjct: 128 MRAKHDYMQQF------------GVETDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I L + E L T ++I K + LE
Sbjct: 176 NKMKGMGQIVSWSIRDESLHCEGIIKLFHAFTKERGCL-TKAVKEDIIDTCQKTVRLEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + +G + G+ K K Y+R+IA+ R+ Q+G + I+ + +P PW++ +++ + +
Sbjct: 235 FIDLAFEQGPVPGMTPKEIKRYIRYIADWRLGQLGFQPIYMIDEHPLPWLAPLLNGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DW 354
NFFETR EY G T DW
Sbjct: 295 NFFETRATEYSKGATRGDW 313
>gi|333030473|ref|ZP_08458534.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
gi|332741070|gb|EGJ71552.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
Length = 347
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 180/351 (51%), Gaps = 18/351 (5%)
Query: 8 KKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQR 66
KKK L N I+ +++ING+T ++N KY W + Y + N W+P+EINM +
Sbjct: 5 KKKAL-FNEHGDIDVNKRRMINGNTTNMNDFNNMKYGWVSNWYRQAMNNFWIPEEINMSQ 63
Query: 67 DIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNI-VLGTYRHITAPECRQYLLRQAF 125
D++ ++N L+ E+R R L F DS+ N+ +G Y +TA E L QAF
Sbjct: 64 DVKDYRN---LSGAEKRAYDRTLSFLIFLDSIQTANLPYVGEY--VTANEVNLCLTIQAF 118
Query: 126 EEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185
+EA+H+ +Y Y+++S+ E I DE L+ + D+ + K+
Sbjct: 119 QEAVHSQSYSYMLDSICSPE-----ERERILYQWRNDEHLLKRNKFIGDIYNEFQLNKST 173
Query: 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245
+LLK+++ I+EG++FY GF+ LGR KM GS + +YI RDE+ H +I
Sbjct: 174 HQLLKTMVA-NYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFQSII 232
Query: 246 NTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANC 305
++ E P L+T E E + + E E + E + + I GL + Y++++AN
Sbjct: 233 LELRKEEPQLFTVEAIAEFRAMIKEGAEQEMAWGEYVIEEEIEGLTQEMVSDYIKYLANL 292
Query: 306 RMKQIGIKQIFP-YERNP--FPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
R + +G + ++P YE P W+++ + +++FFE + Y ++
Sbjct: 293 RCENLGFEILYPGYEDEPASMSWVAQYSNANMIKTDFFEAKPSAYAKSTSI 343
>gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
FSC198]
gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254370173|ref|ZP_04986179.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3
protein/ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379716919|ref|YP_005305255.1| Ribonucleotide reductase of class Ia (aerobic) beta subunit
[Francisella tularensis subsp. tularensis TIGB03]
gi|379725523|ref|YP_005317709.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
[Francisella tularensis subsp. tularensis TI0902]
gi|385794292|ref|YP_005830698.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
NE061598]
gi|421755158|ref|ZP_16192110.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
80700075]
gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3
protein/Ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3
protein/Ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis
FSC198]
gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp.
tularensis FSC033]
gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta
subunit [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3
protein/ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
NE061598]
gi|377826972|gb|AFB80220.1| Ribonucleotide reductase of class Ia (aerobic) beta subunit
[Francisella tularensis subsp. tularensis TI0902]
gi|377828596|gb|AFB78675.1| Ribonucleotide reductase of class Ia (aerobic) beta subunit
[Francisella tularensis subsp. tularensis TIGB03]
gi|409088877|gb|EKM88934.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
80700075]
Length = 410
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + EF KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G I GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 327 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 387 FFENRVTEYEVAGLTGSWD 405
>gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella novicida U112]
gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella novicida FTE]
gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella novicida FTG]
gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp.
novicida GA99-3549]
gi|385792949|ref|YP_005825925.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta
subunit [Francisella novicida U112]
gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549]
gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella tularensis subsp. novicida FTE]
gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella novicida FTG]
gi|332678274|gb|AEE87403.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Francisella cf. novicida Fx1]
Length = 410
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + EF KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDKF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G I GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 327 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 387 FFENRVTEYEVAGLTGSWD 405
>gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548]
gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548]
Length = 410
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + EF KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDKF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G I GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 327 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 387 FFENRVTEYEVAGLTGSWD 405
>gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
LVS]
gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
OSU18]
gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3
protein-ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. holarctica 257]
gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
URFT1]
gi|422938732|ref|YP_007011879.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
FSC200]
gi|423050680|ref|YP_007009114.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
F92]
gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3
protein/Ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. holarctica LVS]
gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3
protein-ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. holarctica 257]
gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase
beta subunit [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|407293883|gb|AFT92789.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
FSC200]
gi|421951402|gb|AFX70651.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
F92]
Length = 410
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + EF KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G I GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 327 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 387 FFENRVTEYEVAGLTGSWD 405
>gi|384489720|gb|EIE80942.1| ribonucleoside-diphosphate reductase small chain [Rhizopus delemar
RA 99-880]
Length = 344
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 180/357 (50%), Gaps = 31/357 (8%)
Query: 1 MSIKLN-NKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMP 59
MSI+LN NK + L + + +++ ++I+ +T L P KY+ W Y + A+ W
Sbjct: 1 MSIELNVNKLQDLSLKN--KVDDEQEEILRENTRRFCLFPIKYHEIWQFYKKAEASFWTA 58
Query: 60 QEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQY 119
+EI++ RD W+N +TE ER + R L FF+++D + N+V + PE + +
Sbjct: 59 EEIDLSRDQNDWENK--MTENERFFISRVLAFFASSDGIVNENLVQNFCDEVKIPEAKCF 116
Query: 120 LLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
Q E IH+ Y ++++ D+ E +F+A I I+ K ++ +I
Sbjct: 117 YGFQIMIENIHSETYSLLIDTYIKDDEEKEMLFSAIDTIPCIKRKADWAFKWI------- 169
Query: 177 FKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESM 236
+ ND + L+ FA + EG+FF F I L ++ M G + + I RDE +
Sbjct: 170 -----SANDS-FAERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGL 222
Query: 237 HCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFK 296
H +F L I+ + + ++ + ++A+ +E + D +P ++G+N
Sbjct: 223 HTDFACLLFTHIRKQPSQ-------QRVKDIIMEAVGIEQEFLTDALPVALIGMNSTLMC 275
Query: 297 SYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLD 353
Y+ F+A+ M +G +I+ NPF +M +MI ++ ++NFFE RV +YQ G ++
Sbjct: 276 QYIEFVADRLMVALGFDKIY-MATNPFDFM-DMISLQGKTNFFEKRVSDYQRAGVMN 330
>gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
holarctica FSC022]
Length = 410
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + EF KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G I GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 327 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 387 FFENRVTEYEVAGLTGSWD 405
>gi|358465646|ref|ZP_09175554.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. oral taxon 370 str. F0437]
gi|357069840|gb|EHI79710.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. oral taxon 370 str. F0437]
Length = 348
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 177/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L +Y WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 22 RKIIKGNSTNLFNLNNVRYQWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTLPERE 78
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI ++TAPE L Q F+EAIH+ +YQYI+ES+
Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NISDYVTAPEVNMLLAIQTFQEAIHSQSYQYIIESILP 137
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 138 KQSRDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENFA------------KVIIANY 185
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + P ++
Sbjct: 186 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDYPEFFS 245
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T ++Y +++AN R+K +G++ ++
Sbjct: 246 AE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLYS 302
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 303 GFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 346
>gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789]
gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a]
gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291]
gi|349579170|dbj|GAA24333.1| K7_Rnr2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 399
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 48 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 107
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +D + N+V + PE
Sbjct: 108 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEA 165
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 166 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 221
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 222 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 272
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 273 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 324
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 325 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 399
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 48 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 107
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +D + N+V + PE
Sbjct: 108 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEA 165
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 166 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 221
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 222 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 272
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 273 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 324
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 325 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct]
Length = 445
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 128 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 186
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 187 VGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 245
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 246 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 292
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + EF KEI + KA+ELE +
Sbjct: 293 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRF 352
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G I GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 353 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 412
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 413 FFENRVTEYEVAGLTGSWD 431
>gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118]
gi|365764844|gb|EHN06363.1| Rnr2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 399
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 48 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 107
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +D + N+V + PE
Sbjct: 108 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEA 165
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 166 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 221
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 222 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 272
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 273 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 324
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 325 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c]
gi|1172946|sp|P09938.2|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1;
AltName: Full=Ribonucleotide reductase R2 subunit 1;
AltName: Full=Ribonucleotide reductase small subunit 1
gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces
cerevisiae]
gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae]
gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c]
gi|392298407|gb|EIW09504.1| Rnr2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 399
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 48 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 107
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +D + N+V + PE
Sbjct: 108 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEA 165
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 166 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 221
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 222 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 272
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 273 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 324
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 325 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella
succinogenes]
Length = 283
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 148/276 (53%), Gaps = 10/276 (3%)
Query: 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
GLT E+ R L DSL NN++ +IT+PE L+RQAFEEA+H+ +Y
Sbjct: 11 GLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYA 70
Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
+VES+ + EI+ + ++ K++ + + L D +LK++
Sbjct: 71 VMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEEL-------AKNPTDSAMLKAMFA- 122
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
I+EG++FY GF L R KM+GS+++ ++I RDE H ++IN +K E P+L
Sbjct: 123 NQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINALKKERPDL 182
Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
+T +E+ ++F KA+ +E + + ILGL + Y++++A+ R+K++G+ +
Sbjct: 183 FTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLKRVGMPIL 242
Query: 316 FPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
+ ++P W+ + ++++NFFE V Y G
Sbjct: 243 YN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 277
>gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein
[Tetrahymena thermophila]
gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein
[Tetrahymena thermophila SB210]
Length = 376
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 160/319 (50%), Gaps = 29/319 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KYN W+ Y A+ W EI++ +D++ W+ LT+ ER +K L FF+ +D
Sbjct: 70 LFPIKYNKVWEMYKKELASFWTADEIDLYQDLKDWER---LTDNERHFIKYVLAFFAASD 126
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + PE R + Q E IH+ Y ++++ DE+E +F A
Sbjct: 127 GIVLENLAEQFMCEVQIPEARAFYGFQIAMENIHSETYSLLIDTYIKDEVEKDYLFKASQ 186
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ I K ++ + +I+ N+ LI FA I EG+FF F I
Sbjct: 187 NVPVIHKKAQWALKWIN-------------NNDNFASRLIAFAAI-EGIFFSGSFCAIFW 232
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L +++ M G + + I RDE +H +F L + M N L T E EI ++ +A+E
Sbjct: 233 LKKRSLMPGLTFSNELISRDEGLHTDFACLLYS---MLNKKL-TKE---EIYEIITEAVE 285
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N K YL F+A+ + +G+ + + +NPF WM +MI I+
Sbjct: 286 IEKEFISEALPVELIGMNSNMMKQYLEFVADRLLFALGVPKFYN-SKNPFEWM-DMISIQ 343
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ +
Sbjct: 344 GKTNFFEKRVGEYQKANVM 362
>gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 68 LSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 127
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +D + N+V + PE
Sbjct: 128 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEA 185
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 186 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 241
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 242 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 292
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 293 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 344
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 345 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 402
>gi|365759956|gb|EHN01709.1| Rnr2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 399
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 29/330 (8%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
++N + L P KY+ W Y + A+ W +EI++ +DI W N + E ER +
Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFIS 135
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
R L FF+ +D + N+V + PE + + Q E IH+ Y ++++ D
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195
Query: 147 E---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +FNA H I I +K E+ + +I D + L+ FA I EG+F
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWI------------QDADALFGERLVAFASI-EGVF 242
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEFCK 262
F F I L ++ M G + + I RDE +H +F L +K + +P +
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAI------- 295
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNP 322
+E++ +A+E+E Y D +P +LG+N Y+ F+A+ + G K+ + E NP
Sbjct: 296 -VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKFYNVE-NP 353
Query: 323 FPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
F +M E I + ++NFFE RV +YQ G +
Sbjct: 354 FDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO]
Length = 399
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 33/360 (9%)
Query: 1 MSIKLNNKKKTLKINSFER--INKINKQ--IINGHTDVNQLVPFKYNWAWDRYLSSCANH 56
+S N K LK + R + ++ K+ ++N + L P KY+ W Y + A+
Sbjct: 48 LSKDXENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASF 107
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W +EI++ +DI W N + E ER + R L FF+ +D + N+V + PE
Sbjct: 108 WTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEA 165
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLT 173
+ + Q E IH+ Y ++++ D E +FNA H I I +K E+ + +I
Sbjct: 166 KSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWI---- 221
Query: 174 DLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRD 233
D + L+ FA I EG+FF F I L ++ M G + + I RD
Sbjct: 222 --------QDADALFGERLVAFASI-EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRD 272
Query: 234 ESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNV 292
E +H +F L +K + +P + +E++ +A+E+E Y D +P +LG+N
Sbjct: 273 EGLHTDFACLLFAHLKNKPDPAI--------VEKIVTEAVEIEQRYFLDALPVALLGMNA 324
Query: 293 KTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
Y+ F+A+ + G K+ + E NPF +M E I + ++NFFE RV +YQ G +
Sbjct: 325 DLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|419570211|ref|ZP_14107260.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 7--1]
gi|419572455|ref|ZP_14109370.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 132-6]
gi|380547728|gb|EIA71645.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 7--1]
gi|380550925|gb|EIA74550.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
coli 132-6]
Length = 340
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 162/311 (52%), Gaps = 12/311 (3%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
KY WA + AN W P+E++ +D ++ LT E+R+ + DS
Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYR--CNLTAGEKRMYDLVWSQLISMDSFQT 92
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRD 160
NN+ +ITAPE L RQA+EEA H+ +Y +VE++ + I+ +++R+
Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152
Query: 161 KDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKM 220
K++F+ + L G+ +D KLL +++ I+EG++FY GF I AL R KM
Sbjct: 153 KNDFISSIYEELA------GDV-DDNKLLLAMVA-NQILEGVYFYSGFTAIYALARAGKM 204
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE 280
+GS+++ ++I RDE H ++IN+++ E +L+ +I +F KA +LE + +
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERSDLFNENNINKIYDMFKKAGDLEIKWGK 264
Query: 281 DTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFF 339
I+G + Y+ ++ + R+ I + +I+ ++P W+ + ++SNFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLVAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323
Query: 340 ETRVMEYQSGG 350
E++V Y G
Sbjct: 324 ESKVTNYSKGS 334
>gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
2_A_57_CT2]
gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
2_A_57_CT2]
Length = 345
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 164/325 (50%), Gaps = 17/325 (5%)
Query: 27 IINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
IING +++ +++WA+ +Y AN W P EINM +DI+ + L + E+
Sbjct: 21 IINGECSNILNWDDVRFSWAYPKYKKMLANFWTPFEINMSQDIKQFPE---LRKSEQEAF 77
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
+ +G + DS+ + +IT ++ A +E IH H+Y Y++ SL
Sbjct: 78 LKIIGLLALLDSIQTD-YAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQ 136
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ E+F + + +++EF++ + D + + LLKS IVF ++EGLF
Sbjct: 137 KQDEVFEFWRTEPILAERNEFVV---NGYKDF----AENPSAENLLKS-IVFDVVLEGLF 188
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L R KM+ +S + YI RDE +H + + + I ENP L T E K
Sbjct: 189 FYSGFAFFYHLARNQKMVATSTMINYINRDEQIHVDLFVKIFKEILQENPELNTNELSKF 248
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+++ F +A ELE +A D + G+ + ++Y++F AN R Q+G ++ F Y NP
Sbjct: 249 VQETFKRAAELEIEWARDVIGSKTEGILLSDVEAYIKFYANIRCNQLGYERPFEGYRTNP 308
Query: 323 FPWMSEMIHIKK-ESNFFETRVMEY 346
W+ + +S+FFE + +Y
Sbjct: 309 LRWIVAYEQVDHGKSDFFEQKSRQY 333
>gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
Length = 352
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 159/319 (49%), Gaps = 20/319 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HWMP+E+ + D W LTE ER L+ + FF+ AD +
Sbjct: 12 PFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--LTEHERNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E +H AY ++++++G+ E E ++A+ + +
Sbjct: 69 EVQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLDYEE 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+ DK ++ F ND+ + ++L +F EG+ + F ++ R
Sbjct: 128 MADKHNYMQQF------------GVDNDEDIARTLAMFGAFTEGMQLFASFAMLMNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDES+HC I + + E L T ++I + K + LE
Sbjct: 176 NKMKGMGQIVSWSIRDESLHCEGIIRMFHEFVRERDCL-TKAVKEDIIDICQKTVRLEDN 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + G+ K K Y+R+IA+ R+ Q+ + I+ + +P PW++ +I+ + +
Sbjct: 235 FIDLAFEMGPVSGMTPKDIKKYIRYIADWRLGQLNLDPIYMVDDHPLPWLAPLINGVEHA 294
Query: 337 NFFETRVMEYQSGGTL-DW 354
NFFE R EY G T DW
Sbjct: 295 NFFEQRATEYSKGATKGDW 313
>gi|402313209|ref|ZP_10832129.1| ribonucleoside-diphosphate reductase, beta subunit [Lachnospiraceae
bacterium ICM7]
gi|400366908|gb|EJP19929.1| ribonucleoside-diphosphate reductase, beta subunit [Lachnospiraceae
bacterium ICM7]
Length = 344
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 177/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L ++ WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRFQWANHLYRTMMANFWIPEKVDLTKDKNDYEN---LTLPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+E+IH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQESIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKILFERNSFIAKIYQDFIDNQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + P ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDYPEFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
TE I +F A+E E + E + +LG+ +T + Y +++AN R+K +G++ ++
Sbjct: 242 TE---TIYSMFNTAVEQEISWTEHIIGNRVLGITSQTTEGYTKWLANERLKSLGLEPLYS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFTKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 400
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 169/329 (51%), Gaps = 19/329 (5%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++I G+ T++N KY W D Y N W+P+EINM D++ ++ L ERR
Sbjct: 74 KKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQYRT---LPVAERR 130
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-G 142
+ L F DSL NN+ ++ITA E L QAF+EA+H+ +Y Y+++++
Sbjct: 131 AYDKILSFLVFLDSLQTNNVPF-IAQYITANEAVLCLTIQAFQEAVHSQSYSYMLDTICS 189
Query: 143 LDE-LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
DE EI + + DE L+ + DL N ++++ L++ L+ I+EG
Sbjct: 190 PDERTEILYQWRD-------DEHLLARNKFIGDLFMAFQNDQSERNLMRVLVA-NYILEG 241
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF+ LGR KM GS + +YI RDE+ H ++++ +++E P+L++ E
Sbjct: 242 IYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRNILSELQVERPDLFSAELV 301
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP---Y 318
+E + + E E + + I GL + Y++++AN R + +G I+P
Sbjct: 302 EEYRAMIKEGAEQEIAWGHYVLGDDIPGLTRQMVTDYIQYLANLRAQNLGFAYIYPDNHS 361
Query: 319 ERNPFPWMSEMIHIKK-ESNFFETRVMEY 346
E W+S+ +++FFE + Y
Sbjct: 362 EPASMSWISQYSDANMVKTDFFEAKSTAY 390
>gi|401841001|gb|EJT43584.1| RNR2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 367
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 29/330 (8%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
++N + L P KY+ W Y + A+ W +EI++ +DI W N + E ER +
Sbjct: 46 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFIS 103
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
R L FF+ +D + N+V + PE + + Q E IH+ Y ++++ D
Sbjct: 104 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 163
Query: 147 E---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +FNA H I I +K E+ + +I D + L+ FA I EG+F
Sbjct: 164 ESEFLFNAIHTIPEIGEKAEWALRWI------------QDADALFGERLVAFASI-EGVF 210
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEFCK 262
F F I L ++ M G + + I RDE +H +F L +K + +P +
Sbjct: 211 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAI------- 263
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNP 322
+E++ +A+E+E Y D +P +LG+N Y+ F+A+ + G K+ + E NP
Sbjct: 264 -VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKFYNVE-NP 321
Query: 323 FPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
F +M E I + ++NFFE RV +YQ G +
Sbjct: 322 FDFM-ENISLAGKTNFFEKRVSDYQKAGVM 350
>gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
DSM 6946]
gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
DSM 6946]
Length = 340
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 177/348 (50%), Gaps = 19/348 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK NS E +N ++++ G+ + KY WA + N W P+E++
Sbjct: 2 DRKKIYNPNSDESLN--DRKVFGGNPHGILNFTKAKYTWALKLWDMMEGNTWFPKEVDTT 59
Query: 66 RD-IELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
+D I+ KN LT+ E+R+ + DS NN+ +ITAPE L RQA
Sbjct: 60 KDVIDYNKN---LTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLSRQA 116
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
+EEA H+ +Y +VE++ D ++ I + DE L D ++ + +
Sbjct: 117 YEEANHSKSYAVMVEAM-CDNTDL------IYEMEKHDEVLRRKNDYISSVYEELAGDVT 169
Query: 185 DQKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
++KL+ L +FA I+EG++FY GF I AL R +M+GS+++ ++I RDE H +
Sbjct: 170 EEKLV--LAMFANQILEGIYFYSGFTAIYALARTGRMLGSAQMIRFIQRDEITHLLLFQN 227
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
+INT K E P+L+T ++ ++F KA +LE + + I+G ++Y+ ++
Sbjct: 228 MINTTKKERPDLFTDALKAKVYEMFQKAGDLEIEWGKYITQNQIMGFTDDIIETYIHYLV 287
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
+ R+ +G +++ +P W+ + +++NFFE V Y G
Sbjct: 288 DDRLTAVGFDKLYN-ASHPIKWVDDFSKFNDQKTNFFEGNVSNYSKGS 334
>gi|347526855|ref|YP_004833602.1| ribonucleoside-diphosphate reductase subunit beta [Sphingobium sp.
SYK-6]
gi|345135536|dbj|BAK65145.1| ribonucleoside-diphosphate reductase beta subunit [Sphingobium sp.
SYK-6]
Length = 377
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA+D + HWMP+E+ + D W L++ ER L+ + FF+ AD +
Sbjct: 38 PFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQAD-V 94
Query: 99 AANNIVLGTYRHITAP-ECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
+ Y + P E + L + E IH AY ++++++G+ E E ++ + E
Sbjct: 95 EVQDCYHDKYGRVFKPTEIKMMLTAFSNMETIHIAAYSHLLDTIGMPESE-YSMFLEYDE 153
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+R K +++ F +D+ + ++L +F EG+ + F ++ R
Sbjct: 154 MRAKHDYMQQF------------GVDSDEDIARTLAMFGGFTEGMQLFASFAMLMNFPRF 201
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ + +RDE++HC + L + E L T ++I K + LE
Sbjct: 202 NKMKGMGQIVTWSVRDETLHCEGIVRLFHEFVKERDCL-TRAVKEDIIDCCQKTVRLEDA 260
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + +G + G+ K Y+R+IA+ R+ Q+G K ++ E +P PW++ +++ + +
Sbjct: 261 FIDLAFEQGPVPGMTANEIKRYIRYIADWRLGQLGFKPVYMIEEHPLPWLTPLLNGVEHA 320
Query: 337 NFFETRVMEYQSGGT 351
NFFETR EY G T
Sbjct: 321 NFFETRATEYSKGAT 335
>gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
7454]
gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
7454]
gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 352
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 177/336 (52%), Gaps = 19/336 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++IING+T ++N KY W D Y + N W+P+EIN+ +DI+ ++N L++ E++
Sbjct: 26 RRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEINLNQDIKDYRN---LSKAEKK 82
Query: 84 LVKRNLGFFSTADSLAANNIV-LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL- 141
R L F + DS+ N+ L TY ITA E L Q ++EAIH+ +Y YI++++
Sbjct: 83 AYDRILSFLTYLDSIQTANLPNLQTY--ITANEINLCLAIQTYQEAIHSQSYSYILDTIC 140
Query: 142 GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
DE I + +DE L+ + D + ++ L++ LI I+EG
Sbjct: 141 SPDER------TRILYLWKEDEHLLKRNKFIGDQYNEFIKDDSEFNLMRVLIA-NYILEG 193
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF LGR KM G+ + +YI RDE+ H +IN +K E P+L+T E
Sbjct: 194 IYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEERPDLFTDELK 253
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
+ L + +E E + + + I GLN + + Y++++ N R K +G+ +I+ YE
Sbjct: 254 EFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLGLGKIYEGYEE 313
Query: 321 NP--FPWMSEMIHIKK-ESNFFETRVMEYQSGGTLD 353
P W+SE + +++FFE +V Y ++
Sbjct: 314 EPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIE 349
>gi|387824671|ref|YP_005824142.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Francisella cf. novicida 3523]
gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Francisella cf. novicida 3523]
Length = 410
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 152/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ T+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ADPTTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + +F KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDKF 326
Query: 279 AEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
E G + GL K Y+R I + R+ Q+G+K+I+ E+NP W+ +++ +N
Sbjct: 327 IELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T W+
Sbjct: 387 FFENRVTEYEVAGLTGSWD 405
>gi|374724341|gb|EHR76421.1| ribonucleoside-diphosphate reductase beta chain [uncultured marine
group II euryarchaeote]
Length = 348
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 158/320 (49%), Gaps = 28/320 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P +++ W+ Y A W +EI++ D++ WKN L +E+ +K L FF+ +D
Sbjct: 37 LFPIQHSDIWEMYKQQMACFWTAEEIDLAEDLKDWKN---LNADEQHFLKHILAFFAASD 93
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + + PE R + Q E IH Y ++++ DE E +F A
Sbjct: 94 GIVNENLGINFSNEVCWPEARAFYGFQIMMENIHAETYSLLIDTYIKDEPEKDHLFKALE 153
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ S++ K E+ + ++ ++ + L+ FA + EG+FF F I
Sbjct: 154 TVPSVKRKGEWAMRWL------------SRKQGSFAERLVAFAAV-EGIFFSGSFCAIFW 200
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F L N L +I ++ +A++
Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLHN-------KLLRGAGAAKITRIIAEAVD 253
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + +P ++G+N + Y++F+A+ + +G +I+ NPFPWM EMI ++
Sbjct: 254 IEIEFVTSALPVSLIGMNSILMEQYIQFVADRLLVALGASKIYNV-VNPFPWM-EMISMQ 311
Query: 334 KESNFFETRVMEYQSGGTLD 353
++NFFE RV EYQ G ++
Sbjct: 312 GKTNFFEKRVAEYQKAGVME 331
>gi|414088198|ref|YP_006988376.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrColossus]
gi|408731568|gb|AFU88012.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrColossus]
Length = 467
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 151/317 (47%), Gaps = 15/317 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+ Y A W P E M +DI W L +E+ L+ + FF+ AD
Sbjct: 13 PFTYPWAYKAYKLMRALSWEPHEAPMDKDILDWNT--KLNPKEKGLLTQLFRFFTQADID 70
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A+ PE R + + EA H AY ++E+LGL E+E + A+ E +++
Sbjct: 71 IASGYFDKYAPRFKLPELRMMIGQFIAAEANHIDAYSTLIETLGLPEVE-YKAFQEYQAM 129
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
R+K E++ F + K L+ + VF+ EG+ + F +++ R+
Sbjct: 130 REKHEYM-----------FARESGKGIADLMVDIAVFSAFGEGMQLFSSFALLMSFQRRG 178
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
M G + + ++ +RDES+H I L++ + E+P W E K + + LE +
Sbjct: 179 LMKGMTTIVEWSIRDESLHVESMIKLLHELIKEHPRAWNDETKKRVYDACRAMVTLEDAF 238
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G + G K Y+R+IA+ R+ Q+G+K + + NPF W+ +++ +N
Sbjct: 239 IDQCTNLGEVEGFTAAEAKEYIRYIADRRLLQLGLKPNYGVKANPFDWLDWIMNAPTHTN 298
Query: 338 FFETRVMEYQSGGTLDW 354
FFE R EY G T W
Sbjct: 299 FFEQRSTEYGKGETPGW 315
>gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
sp. BAL39]
gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
sp. BAL39]
Length = 324
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 158/319 (49%), Gaps = 30/319 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L+P KY W+ Y S A+ W +EI++ D + W N L + ER + L FFS +D
Sbjct: 17 LLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHWDN---LNDGERHFISHILAFFSASD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + + PE R + Q E IH+ Y ++++ D E +F+A
Sbjct: 74 GIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYIKDPEEKDRLFHAIE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K E+ + +ID GN + L+ FA + EG+FF F I
Sbjct: 134 TVPCVKKKAEWALRWID--------NGN------FAERLVAFAAV-EGIFFSGSFCSIFW 178
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE HC F L + +K N + E + + A+E
Sbjct: 179 LKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLK----NKLSEE---HVHGIIRDAVE 231
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + D +P ++G+N K Y+ F+A+ ++++G +I+ + NPF +M EMI ++
Sbjct: 232 IEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYTKIY-HATNPFDFM-EMISLQ 289
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G L
Sbjct: 290 GKTNFFEKRVGDYQKSGVL 308
>gi|417926790|ref|ZP_12570181.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna SY403409CC001050417]
gi|341588542|gb|EGS31940.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna SY403409CC001050417]
Length = 347
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 178/334 (53%), Gaps = 15/334 (4%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++IING+T ++N KY+W + Y + N W+P+EIN+ +DI+ ++N L+E+E+
Sbjct: 21 RRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDYRN---LSEDEKI 77
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DSL + +ITA E L QAF+E+IH+ +Y YI++++
Sbjct: 78 AYDKILSFLIYLDSLQTAQLP-NLEAYITANEVNLCLSIQAFQESIHSQSYSYILDTICS 136
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E E + ++ K DEFL+ + D K+++ +K+LI I+EG++
Sbjct: 137 PE-ERTDILYQWKD----DEFLLERNRFIGDQYNDFFEKKSERNFMKALIA-NYILEGIY 190
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ LGR KM G+ + +YI RDE+ H +I +K E P L+T E +
Sbjct: 191 FYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTEEKNAQ 250
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN- 321
+++ + E E +A+ + + I GL++K + Y++++ N R +G I+P YER
Sbjct: 251 YKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPGYEREI 310
Query: 322 -PFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLD 353
W+SE K +++FFE + Y ++
Sbjct: 311 PSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIE 344
>gi|414088969|ref|YP_006989137.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrRogue]
gi|408730142|gb|AFU86590.1| putative ribonucleoside diphosphate reductase beta subunit
[Caulobacter phage CcrRogue]
Length = 454
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 153/317 (48%), Gaps = 15/317 (4%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA+D Y + HW+P E M DI+ W L E+ + + FF+ AD
Sbjct: 12 PFAYPWAYDAYRIMQSLHWLPHEAPMDTDIQDWNE--KLKPSEKNQLTQLFRFFTQADVD 69
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
A PE R L EA H AY ++++LGL E+E F A+ + +++
Sbjct: 70 VARGYFEKYGPRFPHPEVRMMLASFMAAEANHIDAYATLIDTLGLPEVE-FRAFLDYQAM 128
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
R+K E++ + ++G + D L+ + VF+ EG+ + F ++ R+
Sbjct: 129 REKHEYM---------FERESGTSIAD--LIVDIAVFSAFGEGMQLFSSFALLMNYQRRG 177
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
M G + + ++ +RDE+ H I L++ + E+P W E K I + ++LE +
Sbjct: 178 LMKGMTTIVEWSIRDETHHVESMIKLLHELIKEHPRAWNDETKKRIYDAGRRMVDLEDAF 237
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G + G+ + K Y+R+IA+ R Q+G+K + + NPF W+ +++ +N
Sbjct: 238 IDQAFALGEVDGVTPEDTKKYIRYIADRRWLQLGMKPNYGQKENPFDWLDWIMNAPTHAN 297
Query: 338 FFETRVMEYQSGGTLDW 354
FFE R EY G W
Sbjct: 298 FFEQRSTEYGKGEVAGW 314
>gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna BVS033A4]
gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna BVS033A4]
Length = 347
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 178/334 (53%), Gaps = 15/334 (4%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++IING+T ++N KY+W + Y + N W+P+EIN+ +DI+ ++N L+E+E+
Sbjct: 21 RKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDYRN---LSEDEKI 77
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DSL + +ITA E L QAF+E+IH+ +Y YI++++
Sbjct: 78 AYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYILDTICS 136
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E E + ++ K DEFL+ + D K+++ +K+LI I+EG++
Sbjct: 137 PE-ERTDILYQWKD----DEFLLERNRFIGDQYNDFFEKKSERNFMKALIA-NYILEGIY 190
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ LGR KM G+ + +YI RDE+ H +I +K E P L+T E +
Sbjct: 191 FYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTEEKNAQ 250
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN- 321
+++ + E E +A+ + + I GL++K + Y++++ N R +G I+P YER
Sbjct: 251 YKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPGYEREI 310
Query: 322 -PFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLD 353
W+SE K +++FFE + Y ++
Sbjct: 311 PSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIE 344
>gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
Length = 412
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 159/320 (49%), Gaps = 29/320 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY+ W Y + A+ W +EI++ +D++ W N ++E ER + R L FF+ +D
Sbjct: 101 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWNNK--MSEGERYFISRVLAFFAASD 158
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + PE + + Q E IH+ Y ++++ D E +FNA
Sbjct: 159 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYSRDTEESEFLFNAIE 218
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I++K E+ I +I T L + L+ FA + EG+FF F I
Sbjct: 219 NIPPIKEKAEWAIRWIQDDTAL------------YAERLVAFAAV-EGVFFSGSFAAIFW 265
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK-MENPNLWTTEFCKEIEQLFLKAI 272
L ++ M G + + I RDE +H +F L +K +P++ +E++ +A+
Sbjct: 266 LKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNRPSPDI--------VERIITEAV 317
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
+E Y ED +P +LG+N Y+ F+A+ + +G ++ + NPF +M E I +
Sbjct: 318 SIEKRYFEDALPVALLGMNAALMNQYVEFVADRLLVALGNEKYYNV-TNPFDFM-ENISL 375
Query: 333 KKESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 376 AGKTNFFEKRVSDYQKAGVM 395
>gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga
hutchinsonii ATCC 33406]
gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga
hutchinsonii ATCC 33406]
Length = 324
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 162/321 (50%), Gaps = 33/321 (10%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P K++ W Y A+ W +EI++ +D+ W N L + ER + L FF+ +D
Sbjct: 18 LFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDWAN---LNDGERHFISHVLAFFAASD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + + PE + + Q E IH+ Y ++++ D E +FNA
Sbjct: 75 GIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEKDRLFNAID 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + FID + ++++I FA + EG+FF F +
Sbjct: 135 TVPCVKKKADWALRFID--------------NGSFIENIIAFAAV-EGIFFSGSFCSVFW 179
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMEN--PNLWTTEFCKEIEQLFLKA 271
L ++ M G S + I RDE +HC+F L+ T + N P + + Q+ L+A
Sbjct: 180 LKKRGLMPGLSFSNELISRDEGLHCDFAC-LLYTKYINNKLP-------AERVIQIILEA 231
Query: 272 IELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIH 331
+E+E + D++P ++G+N + + Y+ F+A+ + +G+ + F NPF +M EMI
Sbjct: 232 VEIEKEFVTDSLPVDLIGMNARLMQQYIEFVADRLLVALGVPKQFN-ATNPFDFM-EMIS 289
Query: 332 IKKESNFFETRVMEYQSGGTL 352
++ ++NFFE RV EYQ G +
Sbjct: 290 LQGKTNFFEKRVSEYQKSGVM 310
>gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818]
Length = 408
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 161/322 (50%), Gaps = 28/322 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
++P ++ W Y + A+ W +E+++ RD++ W+ GL + E+ +K L FF+ +D
Sbjct: 98 ILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLKDTEQHFIKHVLAFFAASD 154
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + PE R + Q E IH+ Y ++++ D E +FNA
Sbjct: 155 GIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLIDTYINDPQEKHMLFNAVE 214
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ +++ K E+ + +ID + ++ FA + EG+FF F I
Sbjct: 215 TLPAVKRKAEWAMRWID------------HKRASFAERVVAFAAV-EGIFFSGSFAAIFW 261
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G ++ + I RDE +HC+F + + + + P + + + + A+E
Sbjct: 262 LKKRGLMPGLTQSNELISRDEGLHCDFACLMFSMLHKKPPK-------ERVIGIIMDAVE 314
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P +LG+N + Y+ F+++ + +G +++ NPFP+M E I I+
Sbjct: 315 IEQEFLTEALPVSLLGMNSTLMREYIEFVSDRLLVSLGYDKVY-NATNPFPFM-ENISIE 372
Query: 334 KESNFFETRVMEYQSGGTLDWE 355
++NFFE RV EYQ G + E
Sbjct: 373 GKTNFFERRVSEYQKSGVMAAE 394
>gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna ACS-171-V-Col3]
gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna ACS-171-V-Col3]
Length = 347
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 178/334 (53%), Gaps = 15/334 (4%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++IING+T ++N KY+W + Y + N W+P+EIN+ +DI+ ++N L+E+E+
Sbjct: 21 RRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDYRN---LSEDEKI 77
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DSL + +ITA E L QAF+E+IH+ +Y YI++++
Sbjct: 78 AYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYILDTICS 136
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E E + ++ K DEFL+ + D K+++ +K+LI I+EG++
Sbjct: 137 PE-ERTDILYQWKD----DEFLLERNRFIGDQYNDFFEKKSERNFMKALIA-NYILEGIY 190
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ LGR KM G+ + +YI RDE+ H +I +K E P L+T E +
Sbjct: 191 FYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTEEKNAQ 250
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN- 321
+++ + E E +A+ + + I GL++K + Y++++ N R +G I+P YER
Sbjct: 251 YKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPGYEREI 310
Query: 322 -PFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLD 353
W+SE K +++FFE + Y ++
Sbjct: 311 PSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIE 344
>gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna
ATCC 29328]
gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna
ATCC 29328]
Length = 354
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 178/334 (53%), Gaps = 15/334 (4%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++IING+T ++N KY+W + Y + N W+P+EIN+ +DI+ ++N L+E+E+
Sbjct: 28 RKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDYRN---LSEDEKI 84
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DSL + +ITA E L QAF+E+IH+ +Y YI++++
Sbjct: 85 AYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYILDTICS 143
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E E + ++ K DEFL+ + D K+++ +K+LI I+EG++
Sbjct: 144 PE-ERTDILYQWKD----DEFLLERNRFIGDQYNDFFEKKSERNFMKALIA-NYILEGIY 197
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ LGR KM G+ + +YI RDE+ H +I +K E P L+T E +
Sbjct: 198 FYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTEEKNAQ 257
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN- 321
+++ + E E +A+ + + I GL++K + Y++++ N R +G I+P YER
Sbjct: 258 YKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPGYEREI 317
Query: 322 -PFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLD 353
W+SE K +++FFE + Y ++
Sbjct: 318 PSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIE 351
>gi|422349194|ref|ZP_16430085.1| hypothetical protein HMPREF9465_00975 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404658492|gb|EKB31364.1| hypothetical protein HMPREF9465_00975 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 328
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 19/318 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PFKY WA++ ++ S HW+ E+ M D++ + LT+ ER + + L FF+ D
Sbjct: 19 PFKYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYGQK--LTDSERDFLTKILRFFTQGDID 76
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+ V PE R L A EA+H AY +++E++GL E I+N + + +++
Sbjct: 77 VSGAYVNHYLPRFGQPEVRMMLSSFAAREAVHIAAYSHLIETIGLPE-SIYNEFLQYEAM 135
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
K +F F +V D + L + F+ EG+ + FV +L R
Sbjct: 136 AAKHDF---FNEVAED----------SRDLAAQIAAFSAFTEGMQLFSSFVMLLNFTRNG 182
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
M G ++ + + DE++H L +ENP LW +I + +ELE +
Sbjct: 183 TMKGMGQIIAWSIADETLHTESMTKLFREYIVENPELWNDSLKAKIYGIAETMVELEDRF 242
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ + L + +SY+R+IA+ R+ +G+K IF ++NP PW+ M+ + +N
Sbjct: 243 IDLAFGVSEMRRLTREEVRSYIRYIADRRLIGLGMKGIFGIKKNPLPWVDAMLGV-SHTN 301
Query: 338 FFETRVMEYQSGG-TLDW 354
FFE +V++Y G T DW
Sbjct: 302 FFENKVVDYAKGALTGDW 319
>gi|387887283|ref|YP_006317582.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit [Francisella noatunensis subsp. orientalis str.
Toba 04]
gi|386872099|gb|AFJ44106.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit [Francisella noatunensis subsp. orientalis str.
Toba 04]
Length = 409
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 153/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 101 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 159
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + +++GL + E ++A+ E K++
Sbjct: 160 VGQNYYDQFIPAFKNNEVRNMLGSFAAREGIHQRAYALLNDTIGLPDSE-YHAFLEYKAM 218
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK EF++ +T+ L + VF EG+ + F +L R
Sbjct: 219 TDKIEFMMD----------ADPSTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 265
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + +F KEI + KA+ELE +
Sbjct: 266 KMKGMGKVVEWSIRDESMHVEGNAALFRMYCQENPYIVDNQFKKEIYLMASKAVELEDKF 325
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I GL K Y+R I + R+ Q+G+ +IF ++NP W+ +++ +N
Sbjct: 326 IDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIFNIDKNPLTWLEWILNGADHTN 385
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T +W+
Sbjct: 386 FFENRVTEYEVAGLTGNWD 404
>gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
vaginalis ATCC 51170]
gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
vaginalis ATCC 51170]
Length = 352
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 177/338 (52%), Gaps = 23/338 (6%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++IING+T ++N KY W D Y + N W+P+EIN+ +DI+ ++N L++ E++
Sbjct: 26 RRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRN---LSKAEKK 82
Query: 84 LVKRNLGFFSTADSLAANNIV-LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL- 141
R L F + DS+ N+ L TY ITA E L Q ++EAIH+ +Y YI++++
Sbjct: 83 AYDRILSFLTYLDSIQTANLPNLQTY--ITANEINLCLAIQTYQEAIHSQSYSYILDTIC 140
Query: 142 GLDE-LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL-LKSLIVFACIM 199
DE I + E + +++F+ + K+D + L +++ I+
Sbjct: 141 SPDERTRILYLWKEDDHLLKRNKFIGDQYNEFI---------KDDSEFNLMRVLIANYIL 191
Query: 200 EGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259
EG++FY GF LGR KM G+ + +YI RDE+ H +IN +K E P+L+T E
Sbjct: 192 EGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEERPDLFTDE 251
Query: 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-Y 318
+ L + +E E + + + I GLN + + Y++++ N R K +G+ I+ Y
Sbjct: 252 LKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLGLGTIYEGY 311
Query: 319 ERNP--FPWMSEMIHIKK-ESNFFETRVMEYQSGGTLD 353
E P W+SE + +++FFE +V Y ++
Sbjct: 312 EDEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIE 349
>gi|375255769|ref|YP_005014936.1| ribonucleoside-diphosphate reductase subunit beta [Tannerella
forsythia ATCC 43037]
gi|363408672|gb|AEW22358.1| ribonucleoside-diphosphate reductase, beta subunit [Tannerella
forsythia ATCC 43037]
Length = 350
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 166/333 (49%), Gaps = 15/333 (4%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
K++ING+T ++N KY W D Y + N W+P+EIN+ +D+ K+ L+E ER
Sbjct: 24 KRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLNQDL---KDYAKLSEAERT 80
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DS+ N+ +ITA E L Q F+EA+H+ +Y Y+++++
Sbjct: 81 AYDKILSFLIFLDSIQTANLP-NISDYITASEVNLCLNIQTFQEAVHSQSYSYMLDTICS 139
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E Y DE L+ + DL K+ ++ ++ LI I+EG++
Sbjct: 140 PEQRDAILYQ-----WKNDEVLLNRNKFIGDLYNAFMEDKSVEQFMRVLIA-NYILEGIY 193
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ LGR KM GS++ +YI RDE+ H ++I +K E P ++T E +E
Sbjct: 194 FYSGFMFFYNLGRNGKMPGSAQEIRYINRDENTHLWLFRNIILEMKQECPEMFTPELIEE 253
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
+ K +E E + E + I GL + + Y+R++ N R++ +G +F Y P
Sbjct: 254 YRAMIAKGVEEEIKWGEYVLGDKIEGLTTEMIRDYIRYLGNLRIRSLGFDPLFEGYTSEP 313
Query: 323 --FPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
W+S+ + +++FFE R Y L
Sbjct: 314 ASMSWVSQYSNANMIKTDFFEARSTAYAKSSAL 346
>gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia
sennetsu str. Miyayama]
gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
sennetsu str. Miyayama]
Length = 322
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 19/315 (6%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y+WA+ + HW+P+EI M D++ W + I TE + L+ + FF+ AD +
Sbjct: 12 PFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHKICGTE--KNLLTQIFRFFTQAD-V 68
Query: 99 AANNIVLGTYRHI-TAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKS 157
++ + Y + PE L A E IH AY ++++++G+ E E + A+ + K
Sbjct: 69 EVHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETE-YLAFTKYKQ 127
Query: 158 IRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQ 217
+++K E+L F N ++ K+L V+ EGL + F +L R
Sbjct: 128 MKEKCEYLKAF------------KMDNPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRF 175
Query: 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYY 277
NKM G ++ Y +RDE++H N L T +EN N+ + EI ++ + E
Sbjct: 176 NKMKGMGQIIAYSVRDETLHSNSITKLFRTFLLEN-NIDKFKLEAEIREICNAMVHHEDA 234
Query: 278 YAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKES 336
+ + G + GL K Y+R+IAN R+KQ+G +I+ + NP W+ +++ + +
Sbjct: 235 FIDLAFEMGDVEGLKASEVKEYIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNTVEHT 294
Query: 337 NFFETRVMEYQSGGT 351
NFFE + EY T
Sbjct: 295 NFFENKATEYSKAAT 309
>gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 410
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 153/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ NT+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ANPNTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + +F KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDKF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I GL K Y+R I + R+ Q+G+ +I+ ++NP W+ +++ +N
Sbjct: 327 IDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T +W+
Sbjct: 387 FFENRVTEYEVAGLTGNWD 405
>gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
Length = 349
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 166/344 (48%), Gaps = 23/344 (6%)
Query: 9 KKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDI 68
K+ + + ++ +IN++I+N +D L P Y WD Y + A+ W +EI++ D+
Sbjct: 15 KQEREFSDLQKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL 74
Query: 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 128
K+ L E E+ +K L FF+ +D + N+ R + E +++ Q E
Sbjct: 75 ---KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVEN 131
Query: 129 IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188
IH+ Y ++++ DE E N +H I++ I + + ND
Sbjct: 132 IHSETYSLLIDNYIKDEKERLNLFHAIEN-----------IPAVKNKALWAAKWINDTNS 180
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
IV +EG+ F F I +QNK+ G + + I RDE +H +F + + +
Sbjct: 181 FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLL 240
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
+ P KE A+E+E + +++P ++G+N + Y+ F+A+ ++
Sbjct: 241 DNKLPEQMVQNIVKE-------AVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLE 293
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
+G +IF + +NPF WM ++I ++ ++NFFE RV +YQ G +
Sbjct: 294 CLGCSKIF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSGVM 335
>gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 410
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 153/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 160
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 161 VGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 219
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ NT+ L + VF EG+ + F +L R
Sbjct: 220 TDKIDFMMD----------ANPNTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 266
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + +F KEI + KA+ELE +
Sbjct: 267 KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDKF 326
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I GL K Y+R I + R+ Q+G+ +I+ ++NP W+ +++ +N
Sbjct: 327 IDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADHTN 386
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T +W+
Sbjct: 387 FFENRVTEYEVAGLTGNWD 405
>gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
Length = 346
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 19/327 (5%)
Query: 26 QIING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
+IING ++V Y WA+ +Y AN W P EINM +D++ + N LTE E+
Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQFPN---LTEREQDA 77
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--G 142
+ +G + DS+ + +IT ++ A +E IH H+Y Y++ SL
Sbjct: 78 FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVPK 136
Query: 143 LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
+ E+F + +R +++F+ T+ N + LLKS IV+ I+EGL
Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFV-------TNGYKAFAENPNVENLLKS-IVYDVILEGL 188
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
FFY GF L R KM+ +S + YI RDE +H + + + E P T E +
Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYNTPELAQ 248
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN 321
+ + F+KA +LE +A + I G+++ +Y++F AN R Q+G + F Y N
Sbjct: 249 FVRETFIKAAKLEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFDRPFDGYRTN 308
Query: 322 PFPWMS--EMIHIKKESNFFETRVMEY 346
P W+ E + + K S+FFE + +Y
Sbjct: 309 PLRWIKAYEEVDLGK-SDFFEQKSRQY 334
>gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895]
gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895]
gi|374105604|gb|AEY94515.1| FAAL136Cp [Ashbya gossypii FDAG1]
Length = 422
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 27/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY+ W Y + A+ W +EI++ +DI W N +TE ER + R L FF+ +D
Sbjct: 109 LFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMTENERFFISRVLAFFAASD 166
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + PE + + Q E IH+ Y ++++ D E +FNA
Sbjct: 167 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADHLFNAIE 226
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I++K E+ I +I D + L+ FA + EG+FF F I
Sbjct: 227 TIPEIKEKAEWAIRWI------------QDKDALFAERLVAFAAV-EGIFFSGSFAAIFW 273
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +H +F L + N TE +E++ +A+E
Sbjct: 274 LKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLN----NKPDTEI---VEKIITEAVE 326
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E Y +D +P +LG+N Y+ F+A+ + +G K+ + NPF +M E I +
Sbjct: 327 IEKRYFQDAIPVALLGMNSSLMNQYVEFVADRLLVALGNKKYYNV-SNPFDFM-ENISLA 384
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 385 GKTNFFEKRVSDYQKAGVM 403
>gi|387789964|ref|YP_006255029.1| ribonucleotide reductase subunit beta [Solitalea canadensis DSM
3403]
gi|379652797|gb|AFD05853.1| ribonucleotide reductase, beta subunit [Solitalea canadensis DSM
3403]
Length = 323
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 38/323 (11%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L+P KY W+ Y + A+ W +EI++ D++ W+N + ER + L FF+ +D
Sbjct: 18 LLPIKYPEIWEMYKKAEASFWTAEEIDLSLDLKDWEN---FNDGERHFISHVLAFFAASD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + + PE R Y Q E IH+ Y ++++ D E +FNA
Sbjct: 75 GIVNENLAVNFMSEVQIPEARCYYGFQIMMENIHSETYALLIDTYVKDTAEKNRLFNAIE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K E+ + +I+ + + L+ FA + EG+FF F I
Sbjct: 135 TVPCVKQKAEWALRWIE--------------NGTFAERLVAFAAV-EGIFFSGSFCSIFW 179
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGI----DLINTIKMENPNLWTTEFCKEIEQLFL 269
L ++ M G + + I RDE HC F LIN + E + Q+
Sbjct: 180 LKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLINKLSEER-----------VHQIIT 228
Query: 270 KAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEM 329
A+E+E + D +P ++G+N K + Y+ F+A+ + +G +I+ NPF +M EM
Sbjct: 229 DAVEIEKQFITDALPVALIGMNAKLMQQYIEFVADRWLNALGYSKIYN-ATNPFDFM-EM 286
Query: 330 IHIKKESNFFETRVMEYQSGGTL 352
I ++ ++NFFE RV +YQ G L
Sbjct: 287 ISLQGKTNFFEKRVGDYQKSGVL 309
>gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
ATCC 53516]
gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
ATCC 53516]
Length = 354
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 178/334 (53%), Gaps = 15/334 (4%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++IING+T ++N KY+W + Y + N W+P+EIN+ +DI+ ++N L+E+E+
Sbjct: 28 RKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDYRN---LSEDEKI 84
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DSL + +ITA E L QAF+E+IH+ +Y YI++++
Sbjct: 85 AYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYILDTICS 143
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E E + ++ K DEFL+ + D K+++ +K+LI I+EG++
Sbjct: 144 PE-ERTDILYQWKD----DEFLLERNRFIGDQYNDFFEEKSERNFMKALIA-NYILEGIY 197
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF+ LGR KM G+ + +YI RDE+ H +I +K E P L+T E +
Sbjct: 198 FYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTEEKNAQ 257
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN- 321
+++ + E E +A+ + + I GL++K + Y++++ N R +G I+P YER
Sbjct: 258 YKEMIKQGSEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPGYEREI 317
Query: 322 -PFPWMSEMIHIKK-ESNFFETRVMEYQSGGTLD 353
W+SE K +++FFE + Y ++
Sbjct: 318 PSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIE 351
>gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
CBS 6054]
gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
CBS 6054]
Length = 417
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 159/319 (49%), Gaps = 27/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KYN W Y + A+ W +EI++ +DI W N L + ER + R L FF+ +D
Sbjct: 103 LFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWNNR--LNDNERFFISRILAFFAASD 160
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + PE + + Q E IH+ Y +++S D E +FNA
Sbjct: 161 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPKEADFLFNAID 220
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I IR K ++ + +I + +D + L+ FA + EG+FF F I
Sbjct: 221 NIPCIRKKADWALRWI------------SDDDALFGERLVAFAAV-EGIFFSGSFASIFW 267
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +H +F L + ++ P+ + +E++ +A++
Sbjct: 268 LKKKGLMPGLTFSNELICRDEGLHTDFACLLFSHLQ-NRPD------AEIVEKIITEAVK 320
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + D +P +LG+N + Y+ F+A+ + +G K+++ NPF +M E I +
Sbjct: 321 IEKEFFTDALPSSLLGMNAELMCQYVEFVADRLLVALGNKKVYNV-TNPFDFM-ENISLA 378
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 379 GKTNFFEKRVSDYQKAGVM 397
>gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
biprosthecum C19]
gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
biprosthecum C19]
Length = 352
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 156/320 (48%), Gaps = 28/320 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ + HW+P+E+ + D + W + L++ ER L+ + FF+ +D
Sbjct: 23 PFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWASK--LSDSERNLLTQIFRFFTQSDIE 80
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+N + R E + L A E IH AY ++E++G+ E E F A+ + +++
Sbjct: 81 VQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYEAM 139
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
RDK +F+ F + +L++L +F EGL + F ++ R N
Sbjct: 140 RDKHDFMGTF------------GVDTEADVLRTLAMFGGFTEGLQLFASFAMLMNFPRFN 187
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT------EFCKEIEQLFLKAI 272
KM G ++ + +RDES+HC I L + E L + + CK + + K I
Sbjct: 188 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFAKETKALTKSVQDDIIDCCKTVVTMEDKFI 247
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF-PYERNPFPWMSEMIH 331
+L + + G+ K+Y+R+IA+ R++Q+ + +++ + NP PW+ ++
Sbjct: 248 DLAFEMGP------VQGMTPDDIKAYIRYIADWRLRQLNLPEVYGGVKENPLPWLQVLLS 301
Query: 332 IKKESNFFETRVMEYQSGGT 351
+ +NFFE R EY T
Sbjct: 302 GVEHANFFEARATEYSKAAT 321
>gi|397643211|gb|EJK75718.1| hypothetical protein THAOC_02551 [Thalassiosira oceanica]
Length = 466
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 168/353 (47%), Gaps = 31/353 (8%)
Query: 6 NNKKKTLKINSFERINKINKQ---IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEI 62
N++ + SF R ++++ ++ L P +Y W Y A+ W EI
Sbjct: 115 GNQQHPWQQESFRRHTSVDEREPICVDDDGRRFSLFPIEYPDLWSLYKQHVASFWTADEI 174
Query: 63 NMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLR 122
++ D+ W N L +ER + L FF+ AD + N+V R +T PE R +
Sbjct: 175 DLSADLTHWNNK--LNSDERHFISMVLAFFAGADGIVMENLVERFCREVTVPEARCFYGF 232
Query: 123 QAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKT 179
Q E+IH Y +++S D E +F+A+ + S+ K + +I
Sbjct: 233 QMAMESIHQETYSLLIDSYIDDPKEREVLFSAHSTVPSVERKAIWAQKYI---------- 282
Query: 180 GNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCN 239
++ + LI FA + EG+FF F I L ++ M G + + I RDE +HC+
Sbjct: 283 ---GSNATFAERLIAFATV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCS 338
Query: 240 FGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYL 299
F L + +K N T E I ++ +A+++E + D +P ++G+N Y+
Sbjct: 339 FACQLYSKLK----NKLTQE---HINRIIREAVDVEKSFICDALPVSLIGMNSGLMGQYI 391
Query: 300 RFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
F+A+ + +G + ++ +NPF WM +MI ++ ++NFFE RV EYQ G +
Sbjct: 392 EFVADRMLTDLGYEPLY-RSKNPFDWM-DMISLEGKTNFFEKRVGEYQKSGVM 442
>gi|390939234|ref|YP_006402971.1| ribonucleotide reductase subunit beta [Sulfurospirillum barnesii
SES-3]
gi|390192341|gb|AFL67396.1| ribonucleotide reductase, beta subunit [Sulfurospirillum barnesii
SES-3]
Length = 340
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 178/348 (51%), Gaps = 19/348 (5%)
Query: 7 NKKKTLKINSFERINKINKQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQ 65
++KK +S E +N +++I G+ + KY WA + N W P+E++
Sbjct: 2 DRKKIYNPSSCESLN--DRKIFGGNPHGILNFTKAKYTWALKLWDMMEGNTWFPKEVDTT 59
Query: 66 RD-IELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQA 124
+D I+ KN LT+ E+R+ + DS NN+ +ITAPE L RQA
Sbjct: 60 KDVIDYNKN---LTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLSRQA 116
Query: 125 FEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184
+EEA H+ +Y +VE++ D ++ I + DE L D ++ + +
Sbjct: 117 YEEANHSKSYAVMVEAI-CDNTDL------IYEMEKHDEVLRRKNDYISSVYEELAGDVT 169
Query: 185 DQKLLKSLIVFAC-IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGID 243
++KL+ L +FA I+EG++FY GF I AL R +M+GS+++ ++I RDE H +
Sbjct: 170 EEKLV--LAMFANQILEGIYFYSGFTAIYALARTGRMLGSAQMIRFIQRDEITHLLLFQN 227
Query: 244 LINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIA 303
+IN+ K E P L+T + +++ ++F KA +LE + + I+G ++Y+ ++
Sbjct: 228 MINSTKKERPELFTDDLKEKVYEMFQKAGDLEIEWGKYITQNQIMGFTDDIIETYIHYLV 287
Query: 304 NCRMKQIGIKQIFPYERNPFPWMSEMIHI-KKESNFFETRVMEYQSGG 350
+ R+ +G +++ +P W+ + +++NFFE V Y G
Sbjct: 288 DDRLSAVGFDKLYN-ASHPIKWVDDFSKFNDQKTNFFEGNVSNYSKGS 334
>gi|404483720|ref|ZP_11018937.1| hypothetical protein HMPREF1135_01997 [Clostridiales bacterium
OBRC5-5]
gi|404343079|gb|EJZ69446.1| hypothetical protein HMPREF1135_01997 [Clostridiales bacterium
OBRC5-5]
Length = 344
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 176/344 (51%), Gaps = 32/344 (9%)
Query: 25 KQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
++II G+ T++ L ++ WA Y + AN W+P+++++ +D ++N LT ER
Sbjct: 18 RKIIKGNSTNLFNLNNVRFQWANHLYRTMMANFWIPEKVDLTKDKNDYEN---LTLPERE 74
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
L F DS+ NNI H+TAPE L Q F+E+IH+ +YQYI+ES+
Sbjct: 75 AYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQESIHSQSYQYIIESILP 133
Query: 144 DELE--IFNAYHEIKSIRDKDEFLI----PFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
+ I++ + + K + +++ F+ FID +D F +I+
Sbjct: 134 KQSRDLIYDKWRDDKILFERNSFIAKIYQDFIDNQSDENFA------------KVIIANY 181
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
++E L+FY GF L +NKM+G+S++ + I RDE H ++ IK + P ++
Sbjct: 182 LLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDYPEFFS 241
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E I +F A+E E + E + +LG+ +T + Y +++AN R+K +G++ ++
Sbjct: 242 AE---TIYSMFNTAVEQEINWTEHIIGNRVLGITSQTTEGYTKWLANERLKSLGLEPLYS 298
Query: 318 -YERNPFPWMSEMIHIKKE----SNFFETRVMEYQSGGTLD-WE 355
+ +NP+ + + E SNFFE V Y ++D WE
Sbjct: 299 GFTKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSIDGWE 342
>gi|424513798|emb|CCO66420.1| Ribonucleotide reductase subunit [Bathycoccus prasinos]
Length = 517
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 159/320 (49%), Gaps = 28/320 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY W+ Y + A+ W +EI++ D W I L E E+ + L FF+ +D
Sbjct: 207 LFPMKYPRIWEYYKKAEASFWTAEEIDLTYDYRDW---ITLNENEQHFITHVLAFFAASD 263
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + + I PE R + Q E IH+ Y ++E+ D ++ +F A H
Sbjct: 264 GIVLENLCVRFMKEIQVPEARAFYAFQQSIENIHSETYALLLETYVKDPIQKRNLFRAIH 323
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I +++ K ++ + +I+ + + + L+ FAC+ EG+FF F I
Sbjct: 324 TIPTVKKKADWAMKWIE------------SSSARFAERLVGFACV-EGIFFSGSFCAIFW 370
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F +L + +K + +E+ ++ A+
Sbjct: 371 LKKRGLMKGLTFSNELISRDEGLHCDFACELYSELKHKLSE-------EELHEIVSNAVA 423
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + D + ++G+N Y+ F+A+ + Q+G + + + NPF WM E I ++
Sbjct: 424 IEKEFVCDALSCALVGMNADLMSDYVEFVADRLLVQLGASKYYNAQ-NPFDWM-ETISLQ 481
Query: 334 KESNFFETRVMEYQSGGTLD 353
++NFFE RV +YQ G ++
Sbjct: 482 GKANFFEHRVDQYQKAGVMN 501
>gi|255530602|ref|YP_003090974.1| ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
2366]
gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
2366]
Length = 324
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 156/319 (48%), Gaps = 30/319 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L+P KY W+ Y S A+ W +EI++ D + W N L + ER + L FFS +D
Sbjct: 17 LLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHWDN---LNDGERHFISHILAFFSASD 73
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+ + + PE R + Q E IH+ Y ++++ D E +F+A
Sbjct: 74 GIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYIKDPDEKDRLFHAIE 133
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K E+ + +ID + + L+ FA + EG+FF F I
Sbjct: 134 TVPCVKKKAEWALRWID--------------NGSFAERLVAFAAV-EGIFFSGSFCSIFW 178
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE HC F L +K N + E ++ + A+E
Sbjct: 179 LKKRGLMPGLTFSNELISRDEGSHCEFACLLYGMLK----NKLSQE---QVHGIIRDAVE 231
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + D +P ++G+N K Y+ F+A+ ++++G +I+ NPF +M EMI ++
Sbjct: 232 IEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYSKIYN-ATNPFDFM-EMISLQ 289
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G L
Sbjct: 290 GKTNFFEKRVGDYQKSGVL 308
>gi|337755277|ref|YP_004647788.1| ribonucleotide reductase of class Ia (aerobic) subunit beta
[Francisella sp. TX077308]
gi|336446882|gb|AEI36188.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Francisella sp. TX077308]
Length = 409
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 153/319 (47%), Gaps = 17/319 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF Y WA D + HW+ EI++ D+ WKN +T+ E+ + L F+ +D
Sbjct: 101 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNG-KITKVEKEYITNILRLFTQSDVA 159
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
N E R L A E IH AY + ++LGL + E ++A+ E K++
Sbjct: 160 VGQNYYDQFIPAFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAM 218
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
DK +F++ +T+ L + VF EG+ + F +L R
Sbjct: 219 TDKIDFMMD----------ADPSTRRGLGLCLAKTVFN---EGVALFASFAMLLNFQRFG 265
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
KM G ++ ++ +RDESMH L ENP + +F KEI + KA+ELE +
Sbjct: 266 KMKGMGKVVEWSIRDESMHVEGNAALFRMYCQENPYIVDNQFKKEIYLMASKAVELEDKF 325
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ G I GL K Y+R I + R+ Q+G+ +I+ ++NP W+ +++ +N
Sbjct: 326 IDLAYEIGAIDGLKADEVKEYIRHITDRRLNQLGLNEIYSIDKNPLTWLEWILNGADHTN 385
Query: 338 FFETRVMEYQSGG-TLDWE 355
FFE RV EY+ G T +W+
Sbjct: 386 FFENRVTEYEVAGLTGNWD 404
>gi|429765169|ref|ZP_19297471.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
celatum DSM 1785]
gi|429186912|gb|EKY27841.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
celatum DSM 1785]
Length = 344
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 176/333 (52%), Gaps = 17/333 (5%)
Query: 25 KQIINGHT-DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERR 83
+++ING+T ++N KY W + Y + N W+P+EIN+ +D+ K+ L E ER
Sbjct: 20 RKMINGNTTNLNDFNNMKYGWVSEWYRQAMNNFWIPEEINLAQDL---KDYSKLDEYERS 76
Query: 84 LVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143
+ L F DS+ N+ +ITA E L QAF+EA+H+ +Y Y+++++
Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQAFQEAVHSQSYSYMLDTICS 135
Query: 144 DEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
E EI + + K + ++++F+ + KF TK + L+K+++ I+EG
Sbjct: 136 PEKRNEILYQWKDDKILLERNKFIGRQYN-----KFLESPTK--ENLIKTIMA-NFILEG 187
Query: 202 LFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFC 261
++FY GF+ L R KM GS++ +YI RDE+ H +LI ++ E ++T E
Sbjct: 188 IYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNLIKELQKEEEEIFTKELI 247
Query: 262 KEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YER 320
E+ + + E + + + I G+N +SY++F+ N R+K+IG++ IF Y++
Sbjct: 248 NELRTMMEIGVLNEIKWGNYVIGENIQGINKNLIESYIKFLGNKRLKEIGLEPIFEGYDK 307
Query: 321 NPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352
NP W+ + + +++FFE + Y L
Sbjct: 308 NPATWVDSLANANAVKTDFFEAKSTAYAKASVL 340
>gi|1710398|sp|P50650.1|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase R2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
Length = 349
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 169/344 (49%), Gaps = 23/344 (6%)
Query: 9 KKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDI 68
K+ + + ++ +IN++I+N +D L P Y WD Y + A+ W +EI++ D+
Sbjct: 15 KQEREFSDLQKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL 74
Query: 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 128
K+ L E E+ +K L FF+ +D + N+ R + E +++ Q E
Sbjct: 75 ---KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVEN 131
Query: 129 IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188
IH+ Y ++++ DE E N +H I++ I + + ND
Sbjct: 132 IHSETYSLLIDNYIKDEKERLNLFHAIEN-----------IPAVKNKALWAAKWINDTNS 180
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
IV +EG+ F F I +QNK+ G + + I RDE +H +F + + +
Sbjct: 181 FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLL 240
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
+ P + I+ + +A+E+E + +++P ++G+N + Y+ F+A+ ++
Sbjct: 241 DNKLPE-------QIIQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLE 293
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
+G +IF + +NPF WM ++I ++ ++NFFE RV +YQ G +
Sbjct: 294 CLGCSKIF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSGVM 335
>gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
gi|336236560|ref|YP_004589176.1| ribonucleotide reductase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
gi|335363415|gb|AEH49095.1| ribonucleotide reductase [Geobacillus thermoglucosidasius C56-YS93]
Length = 346
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 163/327 (49%), Gaps = 19/327 (5%)
Query: 26 QIING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRL 84
+IING ++V Y WA+ +Y AN W P EINM +D++ + P+ LTE E+
Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF--PL-LTEREQDA 77
Query: 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--G 142
+ +G + DS+ + +IT ++ A +E IH H+Y Y++ SL
Sbjct: 78 FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVTK 136
Query: 143 LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGL 202
+ E+F + +R +++F+ T+ N + LLKS IV+ I+EGL
Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFV-------TNGYKAFAENPNVENLLKS-IVYDVILEGL 188
Query: 203 FFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262
FFY GF L R KM+ +S + YI RDE +H + + + E P T E +
Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLSEYPEYNTPELAE 248
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERN 321
++ F KA ELE +A + I G+++ +Y++F AN R Q+G ++ F Y N
Sbjct: 249 FVQATFTKAAELEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFERPFAGYRTN 308
Query: 322 PFPWMS--EMIHIKKESNFFETRVMEY 346
P W+ E + + K S+FFE + +Y
Sbjct: 309 PLRWIKAYEEVDLGK-SDFFEQKSRQY 334
>gi|367014807|ref|XP_003681903.1| hypothetical protein TDEL_0E04490 [Torulaspora delbrueckii]
gi|359749564|emb|CCE92692.1| hypothetical protein TDEL_0E04490 [Torulaspora delbrueckii]
Length = 399
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 29/320 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY+ W Y + A+ W +EI++ +DI W N + E ER + R L FF+ +D
Sbjct: 86 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASD 143
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + PE + + Q E IH+ Y ++++ D E +FNA
Sbjct: 144 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESDFLFNAIE 203
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I++K E+ I +I ++ + L+ FA I EG FF F I
Sbjct: 204 NIPQIKEKAEWAIRWI------------QDSESIFAERLVAFAAI-EGYFFSGSFAAIFW 250
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAI 272
L ++ M G + + I RDE +H +F L +K + +P++ IE++ +A+
Sbjct: 251 LKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPSI--------IEKIITEAV 302
Query: 273 ELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHI 332
E+E Y D +P +LG+N Y+ F+A+ + G K+ F NPF +M E I +
Sbjct: 303 EIEKRYFIDALPVSLLGMNADLMNQYVEFVADRLLVAFGNKKFFNV-TNPFDFM-ENISL 360
Query: 333 KKESNFFETRVMEYQSGGTL 352
++NFFE RV +YQ G +
Sbjct: 361 AGKTNFFEKRVSDYQKAGVM 380
>gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
wadsworthensis 3_1_45B]
gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
wadsworthensis 3_1_45B]
Length = 344
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 153/313 (48%), Gaps = 18/313 (5%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
PF+Y WA++ ++ S HW+ E+ M D++ ++ LT+ ER + + L FF+ D
Sbjct: 35 PFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQK--LTDSERDFLTKILRFFTQGDID 92
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
+ V PE R L A EA+H AY +++E+LGL E I+N + + +++
Sbjct: 93 VSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPE-SIYNEFLQYEAM 151
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
K +F F +V D K D L + F+ EG+ + FV +L R
Sbjct: 152 AAKHDF---FNEVCRD--------KGD--LAAQIAAFSAFTEGMQLFSSFVMLLNFTRCG 198
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
M G ++ + + DE++H + ENP LWT E +I + ++LE +
Sbjct: 199 TMKGMGQIIAWSIADETLHTESMTKIFREYITENPELWTDELKAKIYGIAEVMVDLEDKF 258
Query: 279 AEDTMPKGILG-LNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESN 337
+ + L + +SY+R+IA+ R+ +G+K IF NP PW+ M+ + +N
Sbjct: 259 IDLAFGVSEMKRLTREDVRSYIRYIADRRLMGLGLKGIFKSTTNPLPWVDAMLGV-THTN 317
Query: 338 FFETRVMEYQSGG 350
FFE RV++Y G
Sbjct: 318 FFENRVVDYAKGA 330
>gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain
H]
gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium
knowlesi strain H]
Length = 349
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 166/344 (48%), Gaps = 23/344 (6%)
Query: 9 KKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDI 68
KK + ++ + N++I++ TD L P Y WD Y + A+ W +EI++ D+
Sbjct: 15 KKEKAFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL 74
Query: 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEA 128
K+ L E E+ +K L FF+ +D + N+ R + E +++ Q E
Sbjct: 75 ---KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVEN 131
Query: 129 IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188
IH+ Y ++++ DE E N +H I++ I + + ND
Sbjct: 132 IHSETYSLLIDNYIKDEKERMNLFHAIEN-----------IPAVKNKALWAAKWINDTNS 180
Query: 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248
IV +EG+ F F I +QNK+ G + + I RDE +H +F + + +
Sbjct: 181 FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLL 240
Query: 249 KMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308
+ + P KE A+E+E + +++P ++G+N + Y+ F+A+ ++
Sbjct: 241 ENKLPEEVVQNIVKE-------AVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLE 293
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
+G ++IF + +NPF WM ++I ++ ++NFFE RV +YQ G +
Sbjct: 294 CLGSRKIF-HAKNPFNWM-DLISLQGKTNFFEKRVADYQKSGVM 335
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,438,946,689
Number of Sequences: 23463169
Number of extensions: 222521218
Number of successful extensions: 485210
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2246
Number of HSP's successfully gapped in prelim test: 2066
Number of HSP's that attempted gapping in prelim test: 474305
Number of HSP's gapped (non-prelim): 4538
length of query: 355
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 212
effective length of database: 9,003,962,200
effective search space: 1908839986400
effective search space used: 1908839986400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)