BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8868
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/338 (56%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH Y Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTYLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8G|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
Length = 366
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 31 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 89
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 90 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 149
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 150 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 209
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 210 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 269
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 270 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 329
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 330 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 366
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
Length = 346
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18 ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
+R+N +K+++N DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 11 KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
I ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
T E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
+ +NPFPWMSE I + KE NFFETRV+EYQ +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
Length = 399
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 29/330 (8%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
++N + L P KY+ W Y + A+ W +EI++ +DI W N + E ER +
Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFIS 135
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
R L FF+ +D + N+V + PE + + Q E IH+ Y ++++ D
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195
Query: 147 E---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +FNA H I I +K E+ + +I D + L+ FA I EG+F
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWI------------QDADALFGERLVAFASI-EGVF 242
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEFCK 262
F F I L ++ M G + + I RDE +H +F L +K + +P +
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAI------- 295
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNP 322
+E++ +A+E+E Y D +P +LG+N Y+ F+A+ + G K+ + E NP
Sbjct: 296 -VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVE-NP 353
Query: 323 FPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
F +M E I + ++NFFE RV +YQ G +
Sbjct: 354 FDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 29/330 (8%)
Query: 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVK 86
++N + L P KY+ W Y + A+ W +EI++ +DI W N + E ER +
Sbjct: 98 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFIS 155
Query: 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL 146
R L FF+ +D + N+V + PE + + Q E IH+ Y ++++ D
Sbjct: 156 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 215
Query: 147 E---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
E +FNA H I I +K E+ + +I D + L+ FA I EG+F
Sbjct: 216 ESEFLFNAIHTIPEIGEKAEWALRWI------------QDADALFGERLVAFASI-EGVF 262
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEFCK 262
F F I L ++ M G + + I RDE +H +F L +K + +P +
Sbjct: 263 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAI------- 315
Query: 263 EIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNP 322
+E++ +A+E+E Y D +P +LG+N Y+ F+A+ + G K+ + E NP
Sbjct: 316 -VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVE-NP 373
Query: 323 FPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
F +M E I + ++NFFE RV +YQ G +
Sbjct: 374 FDFM-ENISLAGKTNFFEKRVSDYQKAGVM 402
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 166/339 (48%), Gaps = 29/339 (8%)
Query: 17 FERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
F++ + N++I+N ++ L P Y W+ Y + A+ W +EI++ D+ K+
Sbjct: 23 FQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL---KDFEK 79
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L E+ +K L FF+ +D + N+ R + E +++ Q E IH+ Y
Sbjct: 80 LNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSL 139
Query: 137 IVESLGLDELEIFNAYHEIK---SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
++++ DE E N +H I+ +I++K + +I ND I
Sbjct: 140 LIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWI--------------NDTNSFAERI 185
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
V +EG+ F F I +QNK+ G + + I RDE +H +F + + ++ + P
Sbjct: 186 VANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP 245
Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
KE A+E+E + +++P ++G+N + Y+ F+A+ ++ +G
Sbjct: 246 ENVVQNIVKE-------AVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCS 298
Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTL 352
++F + +NPF WM ++I ++ ++NFFE RV +YQ G +
Sbjct: 299 KVF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSGVM 335
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 158/319 (49%), Gaps = 28/319 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +DI+ W++ L EER + L FF+ +D
Sbjct: 25 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 81
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 82 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIE 141
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I + + ++ FA + EG+FF F I
Sbjct: 142 TMPCVKKKADWALRWIG------------DKEATYGERVVAFAAV-EGIFFSGSFASIFW 188
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A+
Sbjct: 189 LKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHL-VHKPSE------ERVREIIINAVR 241
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P ++G+N K Y+ F+A+ M ++G ++F E NPF +M E I ++
Sbjct: 242 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVE-NPFDFM-ENISLE 299
Query: 334 KESNFFETRVMEYQSGGTL 352
++NFFE RV EYQ G +
Sbjct: 300 GKTNFFEKRVGEYQRMGVM 318
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 155/317 (48%), Gaps = 28/317 (8%)
Query: 39 PFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSL 98
P +Y+ W Y + A+ W +E+++ +DI+ W+ L +ER + L FF+ +D +
Sbjct: 85 PIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKPDERHFISHVLAFFAASDGI 141
Query: 99 AANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEI 155
N+V + + E R + Q E IH+ Y ++++ D E +FNA +
Sbjct: 142 VNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETM 201
Query: 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG 215
++ K ++ + +I D + G + ++ FA + EG+FF F I L
Sbjct: 202 PCVKKKADWALRWIG---DKEATYG---------ERVVAFAAV-EGIFFSGSFASIFWLK 248
Query: 216 RQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELE 275
++ M G + + I RDE +HC+F + + + + + ++ A+ +E
Sbjct: 249 KRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAE-------QRVREIITNAVRIE 301
Query: 276 YYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE 335
+ + +P ++G+N K Y+ F+A+ M ++G +IF E NPF +M E I ++ +
Sbjct: 302 QEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVE-NPFDFM-ENISLEGK 359
Query: 336 SNFFETRVMEYQSGGTL 352
+NFFE RV EYQ G +
Sbjct: 360 TNFFEKRVGEYQRMGVM 376
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 157/314 (50%), Gaps = 28/314 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W Y + A+ W +E+++ +D+ W L +E+ + L FF+ +D
Sbjct: 44 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNK---LKADEKYFISHILAFFAASD 100
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + PE R + Q E +H+ Y ++++ D + +FNA
Sbjct: 101 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 160
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D K G + ++ FA + EG+FF F I
Sbjct: 161 TMPYVKKKADWALRWI---ADRKSTFG---------ERVVAFAAV-EGVFFSGSFAAIFW 207
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A++
Sbjct: 208 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL-VNKPSE------ERVREIIVDAVK 260
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P G++G+N K Y+ F+A+ + ++G ++F E NPF +M E I ++
Sbjct: 261 IEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAE-NPFDFM-ENISLE 318
Query: 334 KESNFFETRVMEYQ 347
++NFFE RV EYQ
Sbjct: 319 GKTNFFEKRVSEYQ 332
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
Length = 346
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 154/325 (47%), Gaps = 17/325 (5%)
Query: 27 IING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLV 85
I+NG ++V +++WA+ Y + AN W P EIN D + + LTE E+
Sbjct: 22 ILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAF 78
Query: 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL--GL 143
K+ +G + DS+ + ++T +F+E +H +Y Y++ SL
Sbjct: 79 KKIIGLLAFLDSVQTDYSXRAA-EYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSLVPKA 137
Query: 144 DELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLF 203
+ EIF + +++++EF+I + D + L+S IV+ I+EGL
Sbjct: 138 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVD-------NPTPKTFLES-IVYDVILEGLN 189
Query: 204 FYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263
FY GF L R K + +S YI RDE +H ++ + +E P L T E
Sbjct: 190 FYSGFAFFYNLARNQKXVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTF 249
Query: 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNP 322
++ KA +LE + + I G+N + ++Y+ FIAN R Q+G ++ +P + NP
Sbjct: 250 VKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPEIKHNP 309
Query: 323 FPWMSEMIHIKK-ESNFFETRVMEY 346
W+ + +S+FFE + +Y
Sbjct: 310 XKWIRAYEDVNSGKSDFFEQKSRQY 334
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 144/310 (46%), Gaps = 22/310 (7%)
Query: 17 FERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
++ + N++I++ TD L P Y WD Y + A+ W +EI++ D+ K+
Sbjct: 22 LQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEK 78
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L + E+ +K L FF+ +D + N+ R + E +++ Q E IH+ Y
Sbjct: 79 LNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSL 138
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
++++ DE E N +H I++ I + + ND IV
Sbjct: 139 LIDNYIKDEKERMNLFHAIEN-----------IPAVKNKALWAAKWINDTNSFAERIVAN 187
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
+EG+ F F I +QNK+ G + + I RDE +H +F + + ++ + P
Sbjct: 188 ACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEV 247
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
KE A+E+E + +++P ++G+N + Y+ F+A+ ++ +G +IF
Sbjct: 248 VQNIVKE-------AVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIF 300
Query: 317 PYERNPFPWM 326
+ +NPF WM
Sbjct: 301 -HAKNPFNWM 309
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 143/293 (48%), Gaps = 27/293 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +DI+ W++ L EER + L FF+ +D
Sbjct: 18 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 74
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + E R + Q E IH+ Y ++++ D E +FNA
Sbjct: 75 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIE 134
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D + G + ++ FA + EG+FF F I
Sbjct: 135 TMPCVKKKADWALRWIG---DKEATYG---------ERVVAFAAV-EGIFFSGSFASIFW 181
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A+
Sbjct: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL-VHKPSE------ERVREIIINAVR 234
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWM 326
+E + + +P ++G+N K Y+ F+A+ M ++G ++F E NPF +M
Sbjct: 235 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVE-NPFDFM 286
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 149/304 (49%), Gaps = 28/304 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W Y + A+ W +E+++ +D+ W L +E+ + L FF+ +D
Sbjct: 48 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNK---LKADEKYFISHILAFFAASD 104
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + PE R + Q E +H+ Y ++++ D + +FNA
Sbjct: 105 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIE 164
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
+ ++ K ++ + +I D K G + ++ FA + EG+FF F I
Sbjct: 165 TMPYVKKKADWALRWI---ADRKSTFG---------ERVVAFAAV-EGVFFSGSFAAIFW 211
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +HC+F + + + P+ + + ++ + A++
Sbjct: 212 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL-VNKPSE------ERVREIIVDAVK 264
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P G++G+N K Y+ F+A+ + ++G ++F E NPF +M E I ++
Sbjct: 265 IEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAE-NPFDFM-ENISLE 322
Query: 334 KESN 337
++N
Sbjct: 323 GKTN 326
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 144/304 (47%), Gaps = 28/304 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y W Y + A+ W +E+++ +D+ W L +E+ + L FF+ +D
Sbjct: 33 IFPIQYPDIWKXYKQAQASFWTAEEVDLSKDLPHWNK---LKADEKYFISHILAFFAASD 89
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYH 153
+ N+V + + PE R + Q E +H+ Y ++++ D + +FNA
Sbjct: 90 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEXYSLLIDTYIRDPKKREFLFNAIE 149
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
++ K ++ + +I D K G + ++ FA + EG+FF F I
Sbjct: 150 TXPYVKKKADWALRWI---ADRKSTFG---------ERVVAFAAV-EGVFFSGSFAAIFW 196
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ G + + I RDE +HC+F L + P+ + + ++ + A++
Sbjct: 197 LKKRGLXPGLTFSNELISRDEGLHCDFAC-LXFQYLVNKPSE------ERVREIIVDAVK 249
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E + + +P G++G N K Y+ F+A+ + ++G ++F E NPF + E I ++
Sbjct: 250 IEQEFLTEALPVGLIGXNCILXKQYIEFVADRLLVELGFSKVFQAE-NPFDFX-ENISLE 307
Query: 334 KESN 337
++N
Sbjct: 308 GKTN 311
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 49 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 285
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 286 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ ++ +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ ++ +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSHTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + +S+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
Length = 339
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 139/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + +S+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 138/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ + +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSXTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 138/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + YV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRXYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 138/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ ++ +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + FYV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RD ++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 138/292 (47%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ ++ +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + YV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRAYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RDE++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 138/290 (47%), Gaps = 24/290 (8%)
Query: 59 PQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQ 118
P+E+++ RD ++ L E E+ + NL + + +S+ + + I+ PE
Sbjct: 50 PEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELET 106
Query: 119 YLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKF- 177
++ AF E IH+ +Y +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 107 WVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSY 166
Query: 178 -----KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKMIG 222
+ +T N + + SL ++ C+M E + FYV F A + M G
Sbjct: 167 WHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEG 226
Query: 223 SSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEYYY 278
++++ + I RDE++H ++N ++ + E +E +Q LF++A + E +
Sbjct: 227 NAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW 286
Query: 279 AEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 287 ADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 137/292 (46%), Gaps = 24/292 (8%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPEC 116
W P+E+++ RD ++ L E E+ + NL + + DS+ + + I+ PE
Sbjct: 48 WRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104
Query: 117 RQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLK 176
++ AF E IH+ ++ +I+ ++ D +F+ + I+ + E + + D L ++
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164
Query: 177 F------KTGNTKNDQKLLKSL-----IVFACIM-----EGLFFYVGFVQILALGRQNKM 220
+ +T N + + SL ++ C+M E + YV F A + M
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRXYVSFACSFAFAERELM 224
Query: 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQ----LFLKAIELEY 276
G++++ + I RD ++H ++N ++ + E +E +Q LF++A + E
Sbjct: 225 EGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEK 284
Query: 277 YYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327
+A+ G ++GLN Y+ +I N RM+ +G+ F NP PW++
Sbjct: 285 DWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
Length = 345
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 143/319 (44%), Gaps = 29/319 (9%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P KY+ W Y A+ W +EI + +D E ++ LT++++ + L ++D
Sbjct: 37 MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 93
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD--ELEIFNAYHE 154
+L ++ + PE + + Q E I++ Y +V++ D + +F
Sbjct: 94 NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 153
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
+ ++ K F+ +I ND L +V EG+F + + L
Sbjct: 154 LPEVKHKAAFIERWI-------------SNDDSLYAERLVAFAAKEGIFQAGNYASMFWL 200
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIE 273
+ M G + + I RD + +F L ++ + NP + IE++ +A+E
Sbjct: 201 TDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKI--------IEKIITEAVE 252
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIK 333
+E Y +++P G+++K+ +Y+ F+A+ ++ G ++ + NPF +M ++
Sbjct: 253 IEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYN-AVNPFEFMEDVATAG 311
Query: 334 KESNFFETRVMEYQSGGTL 352
K + FFE +V +YQ +
Sbjct: 312 K-TTFFEKKVSDYQKASDM 329
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
Length = 296
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 42/293 (14%)
Query: 35 NQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94
N+L K WDR N W+P+++ + DI W LT E++L R +
Sbjct: 17 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTM 70
Query: 95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYH- 153
D++ + P L AF E++H +Y I +L EI +A+
Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 129
Query: 154 --EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQI 211
E ++++ K E ++ + + D+ L + V + ++E FY GF
Sbjct: 130 SEENRNLQRKAEIVLQ-------------SYRGDEPLKRK--VASTLLESFLFYSGFYLP 174
Query: 212 LALGRQNKMIGSSELYQYILRDESMHCNF-------GIDLINTIKMENPNLWTTEFCKEI 264
+ + K+ ++++ + I+RDE++H + G+ L++ + +T E
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYE----- 229
Query: 265 EQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
L + + E Y +D + L +VK F LR+ AN + +G + +FP
Sbjct: 230 --LLFELYDNEVEYTQDLYDEVGLTEDVKKF---LRYNANKALMNLGYEALFP 277
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
pdb|4DR0|B Chain B, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
Length = 350
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 117/282 (41%), Gaps = 27/282 (9%)
Query: 49 YLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTY 108
Y + W+P+EI + D+ WK L + E+ + L + D+ N +
Sbjct: 43 YNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA 99
Query: 109 RHITAPECRQYLLRQAF-EEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSIRDKDEFL 165
H+ + + L A E A+H +Y I +L E E+F + K ++ K + +
Sbjct: 100 EHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMI 159
Query: 166 IPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSE 225
+ + K+D+ L +V + +E FY GF L Q K++ S E
Sbjct: 160 VGLYKAIQ---------KDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGE 210
Query: 226 LYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAI----ELEYYYAED 281
+ ILRDE++H + + + E N T E E+ + + + E E Y ED
Sbjct: 211 IINLILRDEAIHGVY----VGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTED 266
Query: 282 TMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER-NP 322
+ L +VK F +R+ AN + +G F E NP
Sbjct: 267 LYDQVGLSHDVKKF---IRYNANKALMNLGFDPYFEEEDINP 305
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 319
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 139/352 (39%), Gaps = 54/352 (15%)
Query: 17 FERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
RI+ IN I D+ W+R S N W+P+++ + DI W+
Sbjct: 3 LSRISAINWNKIQDDKDLE---------VWNRLTS---NFWLPEKVPLSNDIPAWQT--- 47
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
L+ E++L R + D++ P L +F EA+H +Y
Sbjct: 48 LSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSS 107
Query: 137 IVESLGLDELEIFNAY---HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
I +L + E+ AY E ++ K + ++ + +D+ L K
Sbjct: 108 IFSTLCQTK-EVDAAYAWSEENPPLQRKAQIIL-------------AHYVSDEPLKKK-- 151
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNF-------GIDLIN 246
+ + +E FY GF + + K+ +++L + I+RDE++H + + ++
Sbjct: 152 IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLS 211
Query: 247 TIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCR 306
I+ E L+ + E+ ++ E YAE V K++L + AN
Sbjct: 212 AIEREELKLFALDLLMELYDNEIRYTEA--LYAETGW--------VNDVKAFLCYNANKA 261
Query: 307 MKQIGIKQIFPYER---NPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ +G + +FP E NP + + + +FF Y G T++ E
Sbjct: 262 LMNLGYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETE 313
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
Length = 319
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 42/346 (12%)
Query: 17 FERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
RI+ IN I+ D+ W+R S N W+P+++ + DI W+
Sbjct: 3 LSRISAINWNKISDDKDLE---------VWNRLTS---NFWLPEKVPLSNDIPAWQT--- 47
Query: 77 LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITA--PECRQYLLRQAFEEAIHTHAY 134
LT E++L R + D+L N++ A P L +F EA+H +Y
Sbjct: 48 LTVVEQQLTMRVFTGLTLLDTL--QNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSY 105
Query: 135 QYIVESL-GLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
I +L +++ A+ E + + +I + + D L K
Sbjct: 106 SSIFSTLCQTKDVDAAYAWSEENAPLQRKAQII------------QQHYRGDDPLKKK-- 151
Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
+ + +E FY GF + + K+ +++L + I+RDE++H + I ME
Sbjct: 152 IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVH-GYYIGYKYQKNMEKI 210
Query: 254 NLWTTEFCKEIE-QLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGI 312
+L E K L L+ + E Y ++ + +VK F L + AN + +G
Sbjct: 211 SLGQREELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAF---LCYNANKALMNLGY 267
Query: 313 KQIFPYER---NPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
+ +FP E NP + + + +FF Y G ++ E
Sbjct: 268 EPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMGKAVETE 313
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
Length = 329
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 40/281 (14%)
Query: 46 WDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVL 105
WDR N W+P++I + DI+ W +T +E+ R + D++ +
Sbjct: 33 WDRL---TGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQGTVGAI 86
Query: 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSIRDKDE 163
AF E++H +Y I +L E F E ++++ K +
Sbjct: 87 SLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAK 146
Query: 164 FLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGS 223
++ + + LK K +T ++E FY GF + L + K+ +
Sbjct: 147 IIMSYYNGDDPLKKKVAST---------------LLESFLFYSGFYLPMYLSSRAKLTNT 191
Query: 224 SELYQYILRDESMHCNF-------GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+++ + I+RDES+H + G+ ++ + E +T + ++ E E
Sbjct: 192 ADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDL-------YENEI 244
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
Y ED LG + K +LR+ AN + +G + +FP
Sbjct: 245 EYTEDIYDD--LGW-TEDVKRFLRYNANKALNNLGYEGLFP 282
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
Length = 296
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 40/281 (14%)
Query: 46 WDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVL 105
WDR N W+P++I + DI+ W +T +E+ R + D++ +
Sbjct: 32 WDRL---TGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQGTVGAI 85
Query: 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSIRDKDE 163
AF E++H +Y I +L E F E ++++ K +
Sbjct: 86 SLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAK 145
Query: 164 FLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGS 223
++ + + LK K +T ++E FY GF + L + K+ +
Sbjct: 146 IIMSYYNGDDPLKKKVAST---------------LLESFLFYSGFYLPMYLSSRAKLTNT 190
Query: 224 SELYQYILRDESMHCNF-------GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+++ + I+RDES+H + G+ ++ + E +T + ++ E E
Sbjct: 191 ADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDL-------YENEI 243
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
Y ED LG + K +LR+ AN + +G + +FP
Sbjct: 244 EYTEDIYDD--LGW-TEDVKRFLRYNANKALNNLGYEGLFP 281
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
pdb|4AC8|A Chain A, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|B Chain B, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|C Chain C, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|D Chain D, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
Length = 323
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 109/298 (36%), Gaps = 33/298 (11%)
Query: 32 TDVNQLVPFKYNWA---WDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRN 88
T L NWA + A W P +I+ RD W+ L+++ER R
Sbjct: 13 TRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRL 69
Query: 89 LGFFSTADSLAANNI--VLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE- 145
F + +I + R YL + AFEEA HT ++ ++++G+ E
Sbjct: 70 CTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED 129
Query: 146 ----LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEG 201
L+ AY +I F + L L +++ + + I+EG
Sbjct: 130 LHRYLDDLPAYRQI--------FYAELPECLNALSADPSPAAQ----VRASVTYNHIVEG 177
Query: 202 LFFYVGFVQILALGRQNKMI-GSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT-- 258
+ G+ + + ++ G EL + I DE H +G + WT
Sbjct: 178 MLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFE 237
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILG---LNVKTFKSYLRF--IANCRMKQIG 311
E+ L L+ IE + D P + L T K RF I+N R + +
Sbjct: 238 TRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVA 295
>pdb|2ZQ5|A Chain A, Crystal Structure Of Sulfotransferase Stf1 From
Mycobacterium Tuberculosis H37rv (Type1 Form)
Length = 384
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 57 WMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA---NNIVLGTYRHITA 113
W P +R+++L IGL + E+R V +N D+L A + +V+ T+R +
Sbjct: 205 WTPSYCRHRRNLQL----IGLNDAEKRWVLKNPSHLFALDALMATYPDALVVQTHRPVET 260
Query: 114 PECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFN 150
L Q E T +++ +G D ++ ++
Sbjct: 261 IMASMCSLAQHTTEGWST---KFVGAQIGADAMDTWS 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,078,525
Number of Sequences: 62578
Number of extensions: 409719
Number of successful extensions: 1044
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 40
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)