Query psy8868
Match_columns 355
No_of_seqs 135 out of 1097
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:24:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1syy_A Ribonucleoside-diphosph 100.0 3.3E-86 1.1E-90 639.0 31.7 337 16-354 9-346 (346)
2 2rcc_A Ribonucleoside-diphosph 100.0 1.3E-82 4.4E-87 614.2 33.4 328 14-355 11-344 (346)
3 1mxr_A Ribonucleotide reductas 100.0 3.7E-82 1.3E-86 616.5 32.7 333 15-352 6-362 (375)
4 1jk0_B RNR Y4, ribonucleoside- 100.0 1.7E-79 5.7E-84 590.6 20.9 305 23-352 23-329 (345)
5 2p1i_A Ribonucleotide reductas 100.0 9.5E-79 3.2E-83 586.2 22.6 305 22-352 28-335 (349)
6 1h0o_A Ribonucleoside-diphosph 100.0 1.5E-77 5.1E-82 583.5 30.9 304 24-352 70-376 (390)
7 1jk0_A RNR Y2, ribonucleoside- 100.0 5.9E-77 2E-81 582.5 26.7 307 22-352 93-402 (419)
8 3n37_A Ribonucleoside-diphosph 100.0 2.1E-75 7.2E-80 557.2 32.1 299 33-352 7-310 (319)
9 4dr0_A Ribonucleoside-diphosph 100.0 2E-75 7E-80 562.4 30.6 308 27-351 21-333 (350)
10 4a58_A Ribonucleoside-diphosph 100.0 4.6E-76 1.6E-80 561.8 25.8 297 25-351 16-321 (324)
11 3olj_A Ribonucleoside-diphosph 100.0 2.5E-75 8.5E-80 548.8 27.5 280 23-326 4-286 (286)
12 3dhz_A Ribonucleotide reductas 100.0 9.6E-75 3.3E-79 554.5 31.6 299 33-352 17-320 (329)
13 2o1z_A Ribonucleotide reductas 100.0 4.6E-74 1.6E-78 545.5 25.2 281 22-327 27-310 (311)
14 3mjo_A Ribonucleotide reductas 100.0 7.7E-69 2.6E-73 506.7 31.0 277 32-329 15-294 (296)
15 3ee4_A Probable ribonucleoside 100.0 3.2E-63 1.1E-67 473.1 22.5 275 25-319 15-295 (323)
16 2inc_A Toluene, O-xylene monoo 98.3 2.8E-05 9.6E-10 77.3 18.1 220 76-315 83-313 (491)
17 1mty_D Methane monooxygenase h 98.1 0.0002 7E-09 71.3 19.7 219 76-315 80-315 (512)
18 3pvt_A Phenylacetic acid degra 98.1 0.00073 2.5E-08 63.2 21.9 205 76-315 24-243 (311)
19 2uw1_A Desaturase, plastid del 98.0 0.0016 5.6E-08 61.2 21.5 183 43-255 20-225 (338)
20 2inc_B Toluene, O-xylene monoo 97.9 0.0033 1.1E-07 59.2 22.1 211 76-311 105-322 (322)
21 3u52_C Phenol hydroxylase comp 97.5 0.017 5.7E-07 54.6 21.5 212 76-314 110-328 (333)
22 3ge3_A Toluene-4-monooxygenase 97.5 0.0016 5.6E-08 64.6 15.0 221 76-316 84-315 (500)
23 2oc5_A Hypothetical protein; D 97.5 0.041 1.4E-06 47.3 21.4 197 78-314 28-231 (244)
24 1za0_A Possible acyl-[acyl-car 97.4 0.0016 5.6E-08 59.7 12.4 175 48-254 24-209 (275)
25 3u52_A Phenol hydroxylase comp 97.3 0.015 5E-07 58.0 18.9 217 76-316 88-319 (511)
26 1mhy_B Methane monooxygenase h 97.3 0.019 6.7E-07 55.3 18.8 227 69-315 134-381 (395)
27 3ge3_B Toluene-4-monooxygenase 97.2 0.021 7.3E-07 53.7 18.4 186 76-279 109-301 (327)
28 1mty_B Methane monooxygenase h 97.2 0.014 4.8E-07 56.1 16.8 222 76-315 130-371 (384)
29 3chh_A P-aminobenzoate N-oxyge 96.7 0.066 2.3E-06 50.6 16.5 176 54-254 57-247 (336)
30 3pf7_A Benzoyl-COA oxygenase c 96.5 0.013 4.5E-07 56.5 10.4 159 69-250 96-256 (481)
31 1otk_A Protein PAAC, phenylace 94.9 1.4 4.8E-05 39.6 16.4 195 85-315 5-212 (249)
32 1zpy_A Hypothetical protein NE 93.3 0.62 2.1E-05 35.4 9.0 66 76-144 12-77 (95)
33 1rcw_A CT610, CADD; iron, DI-i 92.9 4.4 0.00015 35.2 20.6 151 107-284 61-220 (231)
34 3k6c_A Uncharacterized protein 88.1 4 0.00014 30.9 9.0 65 76-143 12-76 (95)
35 3oql_A TENA homolog; transcrip 84.0 24 0.00081 31.7 15.8 149 114-285 89-247 (262)
36 3bjd_A Putative 3-oxoacyl-(acy 83.8 28 0.00094 32.3 16.5 154 106-284 162-324 (332)
37 3dde_A TENA/THI-4 protein, dom 83.1 23 0.00078 30.9 18.4 151 108-283 63-218 (239)
38 3qhb_A Symerythrin, ORF180; fo 78.9 29 0.00098 29.3 12.6 127 106-249 49-176 (179)
39 1za0_A Possible acyl-[acyl-car 77.0 10 0.00034 34.5 8.7 43 105-147 167-210 (275)
40 2a2m_A Hypothetical protein BT 61.1 88 0.003 27.6 17.3 143 108-285 106-251 (258)
41 1yuz_A Nigerythrin; rubrythrin 58.7 86 0.0029 26.8 11.2 112 107-249 53-164 (202)
42 2qcx_A Transcriptional activat 57.4 1E+02 0.0035 27.2 21.6 154 107-285 85-242 (263)
43 2uw1_A Desaturase, plastid del 57.2 31 0.0011 32.2 7.8 42 106-147 183-225 (338)
44 3ez0_A Uncharacterized protein 57.1 99 0.0034 27.0 21.4 203 80-313 11-224 (225)
45 4am5_A Bacterioferritin; metal 55.0 41 0.0014 27.2 7.6 68 213-282 31-101 (159)
46 3e6s_A Ferritin; iron storage, 54.2 50 0.0017 27.3 8.0 73 208-282 24-102 (168)
47 3uno_A Probable bacterioferrit 53.7 40 0.0014 28.5 7.4 81 199-281 21-105 (189)
48 3hl1_A Ferritin like protein; 52.7 34 0.0012 31.6 7.2 53 196-250 18-70 (317)
49 3k6c_A Uncharacterized protein 50.5 54 0.0019 24.6 6.7 56 187-248 19-74 (95)
50 1zpy_A Hypothetical protein NE 48.1 62 0.0021 24.3 6.7 56 187-248 19-74 (95)
51 2hz8_A De novo designed DIIRON 47.8 40 0.0014 26.3 5.8 48 221-279 61-108 (115)
52 1s3q_A Ferritin; ferroxidase, 47.7 88 0.003 25.8 8.6 68 212-281 31-102 (173)
53 1nfv_A Bacterioferritin; 24 su 47.1 68 0.0023 26.2 7.8 96 185-282 9-106 (179)
54 1o9i_A Pseudocatalase; oxidore 45.0 35 0.0012 30.7 5.9 70 54-142 123-193 (266)
55 2fzf_A Hypothetical protein; s 44.5 1.3E+02 0.0043 24.5 16.5 139 87-250 23-163 (175)
56 1krq_A Ferritin; H-chain like 44.3 1E+02 0.0035 25.0 8.5 68 212-281 29-100 (167)
57 2fzf_A Hypothetical protein; s 43.9 85 0.0029 25.6 7.9 55 86-141 107-161 (175)
58 2v8t_A Manganese-containing ps 40.6 44 0.0015 30.6 5.9 73 53-144 129-203 (302)
59 3pwf_A Rubrerythrin; non heme 38.6 1.7E+02 0.0057 24.2 13.2 99 106-249 30-128 (170)
60 3fvb_A Bacterioferritin; niaid 37.7 1.3E+02 0.0044 24.8 8.1 68 212-281 51-121 (182)
61 1j30_A 144AA long hypothetical 37.1 1.5E+02 0.0052 23.3 14.6 104 110-249 36-141 (144)
62 4di0_A Rubrerythrin; ssgcid, s 36.7 1.6E+02 0.0055 23.5 12.9 104 107-246 37-140 (144)
63 3oj5_A Ferritin family protein 36.3 1.2E+02 0.0042 25.1 7.8 68 212-281 34-105 (189)
64 1j30_A 144AA long hypothetical 35.9 1.4E+02 0.0048 23.4 7.8 61 213-278 33-95 (144)
65 3bvf_A Ferritin; iron storage, 35.3 1.3E+02 0.0045 24.8 7.8 78 201-282 34-115 (181)
66 1yuz_A Nigerythrin; rubrythrin 33.4 1.6E+02 0.0056 24.9 8.2 66 213-279 52-120 (202)
67 1o9i_A Pseudocatalase; oxidore 32.3 2.7E+02 0.0093 24.8 10.2 130 111-250 49-194 (266)
68 1vlg_A Ferritin; TM1128, struc 30.9 1.7E+02 0.0058 23.8 7.7 68 212-281 43-114 (176)
69 3b5o_A CADD-like protein of un 27.5 3.2E+02 0.011 24.1 16.6 143 114-283 72-226 (244)
70 1lko_A Rubrerythrin all-iron(I 25.6 76 0.0026 26.7 4.6 64 213-280 33-100 (191)
71 3n37_A Ribonucleoside-diphosph 23.9 2.1E+02 0.0073 26.0 7.7 63 185-250 52-114 (319)
72 1vjx_A Putative ferritin-like 23.5 2E+02 0.0067 22.9 6.7 38 103-140 118-155 (157)
73 2oh3_A Rubrerythrin, COG1633: 23.4 2.2E+02 0.0075 22.8 7.0 42 103-144 111-152 (167)
74 3qz3_A Ferritin; structural ge 23.1 3E+02 0.01 22.7 7.9 69 212-282 38-110 (184)
75 2jd6_0 Ferritin homolog, ferri 23.1 2.9E+02 0.01 22.1 8.0 61 219-280 35-99 (174)
76 2v2p_A Ferritin light chain; m 22.7 3.1E+02 0.011 22.3 8.2 70 212-282 35-110 (174)
77 3mjo_A Ribonucleotide reductas 22.5 2.4E+02 0.0083 25.3 7.7 63 185-250 61-123 (296)
78 1udd_A Transcriptional regulat 21.7 3.6E+02 0.012 22.7 19.6 140 113-284 65-213 (226)
79 1lko_A Rubrerythrin all-iron(I 21.2 3.6E+02 0.012 22.4 12.2 131 88-250 12-144 (191)
80 3dhz_A Ribonucleotide reductas 20.5 2.3E+02 0.0079 25.9 7.2 63 185-250 62-124 (329)
No 1
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=100.00 E-value=3.3e-86 Score=638.97 Aligned_cols=337 Identities=56% Similarity=1.000 Sum_probs=295.4
Q ss_pred ccccccccCcccccC-CCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHH
Q psy8868 16 SFERINKINKQIING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST 94 (355)
Q Consensus 16 ~~~~~~~~~~~i~~g-~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~ 94 (355)
+.++.+.++++|++| ++++++++|++|||+|++|+++.++||.|+|||+++|++||++ ++||+.||++++++|++|++
T Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~-~~Lt~~Er~~~~~~l~~~~~ 87 (346)
T 1syy_A 9 KQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILLNLGFFST 87 (346)
T ss_dssp GGGSCCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH
T ss_pred CCCccccccCcCcCCCCCCcceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhh-ccCCHHHHHHHHHHHHHHHH
Confidence 567777889999999 5899999999999999999999999999999999999999982 25999999999999999999
Q ss_pred hhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Q psy8868 95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTD 174 (355)
Q Consensus 95 ~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~ 174 (355)
+|++|++++.+.+++.++.||+++|+++|+++|+||+++||+|+++++.+++++|+++.++|.+++|++|+.++|+++.+
T Consensus 88 ~D~iv~~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~e~f~~~~~~p~l~~k~~~i~~~y~~~~~ 167 (346)
T 1syy_A 88 AESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLD 167 (346)
T ss_dssp HHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHHTTSGGGS
T ss_pred HHHHHHHhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred hhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8868 175 LKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254 (355)
Q Consensus 175 ~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~ 254 (355)
+.++..++++++++++++++|++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++|.|+
T Consensus 168 ~~~~~~~~~~~~~~~~~lva~~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~p~ 247 (346)
T 1syy_A 168 PNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPE 247 (346)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Confidence 66677777778899999999767999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccc
Q psy8868 255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK 334 (355)
Q Consensus 255 ~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~ 334 (355)
.++++++++|++++++||++|++|++++++.+++|+|++++++||+|+||+||++||++|+| +++||+|||.+++++++
T Consensus 248 ~~~~e~~~~v~~l~~eav~~E~~~~~~~l~~~~~Gln~~~~~~yi~y~an~rL~~lG~~~~y-~~~np~pw~~~~~~~~~ 326 (346)
T 1syy_A 248 IWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY-HTKNPFPWMSETIDLNK 326 (346)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSS-CCCCSCTTC--------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCCchHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 57999999988999988
Q ss_pred cCCCcccccccccccccccC
Q psy8868 335 ESNFFETRVMEYQSGGTLDW 354 (355)
Q Consensus 335 ~~nFFe~~~t~Y~~~~~~~~ 354 (355)
.+||||+|+++|++|++++|
T Consensus 327 ~~nFFe~~~~~Y~~~~~~~~ 346 (346)
T 1syy_A 327 EKNFFETRVIEYQHAASLTW 346 (346)
T ss_dssp --------------------
T ss_pred CCCCCcCCCccccccccCCC
Confidence 88999999999999999988
No 2
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.3e-82 Score=614.16 Aligned_cols=328 Identities=27% Similarity=0.509 Sum_probs=281.8
Q ss_pred cCccccccccCcccccCC-CCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHH
Q psy8868 14 INSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFF 92 (355)
Q Consensus 14 ~~~~~~~~~~~~~i~~g~-~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~ 92 (355)
.|+.+++ .+++|++|+ ++..+++|++|||+|++|+++.++||+|+|||+++|++||+ +||+.||++++++|++|
T Consensus 11 fn~~~~~--~~~~i~~~~~~~~~n~~~~~y~~~~~ly~~~~~~fW~peEIdls~D~~dw~---~Lt~~Er~~~~~~l~~~ 85 (346)
T 2rcc_A 11 YDTTASN--ASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFP---TLTETEQEAFKKIIGLL 85 (346)
T ss_dssp CCTTSCS--SCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGG---GSCHHHHHHHHHHHHHH
T ss_pred CCCCCCC--ccCCCcCCCCCcccccCCCCCHHHHHHHHHHHHcCCChhhcchhhhHHHHH---HCCHHHHHHHHHHHHHH
Confidence 4566655 789999999 55888999999999999999999999999999999999999 99999999999999999
Q ss_pred HHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHhhCHHHHHHHHHHHHHHH
Q psy8868 93 STADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL--DELEIFNAYHEIKSIRDKDEFLIPFID 170 (355)
Q Consensus 93 ~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~--~~~e~f~~~~~~p~l~~k~~~i~~~~~ 170 (355)
+++|++|++++ +.+++.++.||+++|+++|+++|+||+++||+|+++++. +++++|+++.++|.+++|++|+.++|+
T Consensus 86 ~~~D~~v~~~l-~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~~~~~p~l~~k~~~i~~~~~ 164 (346)
T 2rcc_A 86 AFLDSVQTDYS-MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNEFIIDGYE 164 (346)
T ss_dssp HHTTTTCCCHH-HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhH-HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999998 789999999999999999999999999999999999986 356799999999999999999999998
Q ss_pred HhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8868 171 VLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
++.+ +++++++++++++ ++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++
T Consensus 165 ~~~~-------~~~~~~~~~~lva-~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 236 (346)
T 2rcc_A 165 KFVD-------NPTPKTFLESIVY-DVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLV 236 (346)
T ss_dssp HHHH-------SCCHHHHHHHHHH-HHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhc-------CCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7643 2346789999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCcchHHHhc
Q psy8868 251 ENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP-YERNPFPWMSEM 329 (355)
Q Consensus 251 e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~-~~~nP~~w~~~~ 329 (355)
|.|+.++++++++|++++++||++|++|++++++.+++|+|++++++||+|+||+||++||++++|+ ...||+|||+.+
T Consensus 237 e~~~~~~~e~~~~v~~l~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~nP~~w~~~~ 316 (346)
T 2rcc_A 237 EFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNPMKWIRAY 316 (346)
T ss_dssp HCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHTTCCCSCTTCCSCSCTTC---
T ss_pred cCChhccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999889999999999999999999999999999997 478999999998
Q ss_pred ccc-cccCCCccccccccccccccc-CC
Q psy8868 330 IHI-KKESNFFETRVMEYQSGGTLD-WE 355 (355)
Q Consensus 330 ~~~-~~~~nFFe~~~t~Y~~~~~~~-~~ 355 (355)
+++ .+++||||+|+++|+++++++ ||
T Consensus 317 ~~~~~~~~nFFe~~~~~Y~~~~~~~~~d 344 (346)
T 2rcc_A 317 EDVNSGKSDFFEQKSRQYAKVSADNGFD 344 (346)
T ss_dssp ----------------------------
T ss_pred hccCccccCCCcCCccccccccCccccc
Confidence 888 447799999999999998776 86
No 3
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=100.00 E-value=3.7e-82 Score=616.48 Aligned_cols=333 Identities=23% Similarity=0.400 Sum_probs=287.0
Q ss_pred CccccccccCcccccCC-CCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHH
Q psy8868 15 NSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFS 93 (355)
Q Consensus 15 ~~~~~~~~~~~~i~~g~-~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~ 93 (355)
|+.+. +..+++|++|+ ++++.+.|++|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|+
T Consensus 6 n~~~~-~~~~~~~~~g~~~n~~r~~~~~y~~~~~lykk~~~~fW~peEIdls~D~~dw~---~Lt~~Er~~~~~~l~~~~ 81 (375)
T 1mxr_A 6 SQTKN-DQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQT 81 (375)
T ss_dssp CCSCC-CTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHH---TSCHHHHHHHHHHHHHHH
T ss_pred CCCCC-ccccCcCcCCCCCChhhcCCcccHHHHHHHHHHHhcCCCchhcchhhhHHHHH---HCCHHHHHHHHHHHHHHH
Confidence 34443 44679999998 68889999999999999999999999999999999999999 999999999999999999
Q ss_pred HhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhh
Q psy8868 94 TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLT 173 (355)
Q Consensus 94 ~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~ 173 (355)
++|++|++++.+.+++.++.||+++|+++|+++|+||+++||+|+++++.+++++|+++.++|.+++|++|+.++|+++.
T Consensus 82 ~~Dsiv~~~~~~~~~~~v~~pE~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~e~f~~i~~~p~i~~Ka~~i~~~y~~~~ 161 (375)
T 1mxr_A 82 LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELI 161 (375)
T ss_dssp HHHHHHHHHHHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred hhh--h---------------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhh
Q psy8868 174 DLK--F---------------KTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESM 236 (355)
Q Consensus 174 ~~~--~---------------~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~ 236 (355)
+.. | ...+++++++++++++++ +++|||+|||||+++++|+++|+|||++++|++|+|||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lva~-~~lEgi~FysgF~~~~~l~~~g~m~G~~~~i~lI~RDE~l 240 (375)
T 1mxr_A 162 EMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSV-NALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 240 (375)
T ss_dssp HHHHHHHHHCSEEEEETTEEEEECHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhccchhhcccccccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 321 1 122234567899999996 5899999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHh--hCCcccc--HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHCC
Q psy8868 237 HCNFGIDLINTIKM--ENPNLWT--TEFCKEIEQLFLKAIELEYYYAEDTMPK-GILGLNVKTFKSYLRFIANCRMKQIG 311 (355)
Q Consensus 237 H~~~~~~l~~~l~~--e~~~~~~--~~~~~~i~~l~~~ave~E~~~~~~~~~~-~i~Gl~~~~~~~yv~y~an~~L~~lG 311 (355)
|+.|++.+++.+++ ++|+.++ ++++++|++++++||++|++|++++++. +++|++++.+++||+|+||+||++||
T Consensus 241 H~~~~~~l~~~l~~~~e~p~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL~~LG 320 (375)
T 1mxr_A 241 HLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVG 320 (375)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998 7888865 8899999999999999999999999986 58899999999999999999999999
Q ss_pred CCCCCCCCCCcchHHHhcccccc-cCCCcccccccccccccc
Q psy8868 312 IKQIFPYERNPFPWMSEMIHIKK-ESNFFETRVMEYQSGGTL 352 (355)
Q Consensus 312 ~~~~f~~~~nP~~w~~~~~~~~~-~~nFFe~~~t~Y~~~~~~ 352 (355)
++++|+...||+|||+.+++.++ ++||||+++++|++|+..
T Consensus 321 ~~~~y~~~~nP~~w~~~~~~~~~~~~nFFE~~~t~Y~~~~~~ 362 (375)
T 1mxr_A 321 LDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQID 362 (375)
T ss_dssp CCCCSCCCCCSCGGGGGTC-----------------------
T ss_pred CCCCCCCCCCCHHHHHHHHhhcccccCCCccCcchhhhcccc
Confidence 99999756999999998887755 579999999999999755
No 4
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=1.7e-79 Score=590.62 Aligned_cols=305 Identities=22% Similarity=0.450 Sum_probs=236.5
Q ss_pred cCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhc
Q psy8868 23 INKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANN 102 (355)
Q Consensus 23 ~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~ 102 (355)
.+++|++||+.+++++|++|||+|++|+++.++||+|+|||+++|++||+ +||+.||++++++|++|+++|++|+++
T Consensus 23 ~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEI~ls~D~~dw~---~Lt~~Er~~~~~~l~~~~~~D~iv~~n 99 (345)
T 1jk0_B 23 KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQKTYIGNLLALSISSDNLVNKY 99 (345)
T ss_dssp TTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTT---TSCTTHHHHHHHHHHHHC---------
T ss_pred hcCchhcCCCcccccCCCcchHHHHHHHHHHHcCCChhhcChhhhHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8868 103 IVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE--IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTG 180 (355)
Q Consensus 103 l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e--~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~ 180 (355)
+.+.+++.++.||+++|+++|+++|+||+++||+|+++++.++.+ +|+++.++|.+++|++|+.+++++
T Consensus 100 l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~e~~~f~~~~~~p~l~~K~~~i~~~~~~--------- 170 (345)
T 1jk0_B 100 LIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISN--------- 170 (345)
T ss_dssp CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTSCSGGGGCSCHHHHHHHHHHHHTTSS---------
T ss_pred hHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHhC---------
Confidence 998899999999999999999999999999999999999976554 899999999999999999988753
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHH
Q psy8868 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEF 260 (355)
Q Consensus 181 ~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~ 260 (355)
+++++++++++| +++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++ |+
T Consensus 171 ---~~~~~~~~lva~-~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~-~~------ 239 (345)
T 1jk0_B 171 ---DDSLYAERLVAF-AAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTK-PN------ 239 (345)
T ss_dssp ---SSCCHHHHHHHH-HHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-CC------
T ss_pred ---CcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC------
Confidence 134589999996 7899999999999999999999999999999999999999999999999998865 42
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccCCCcc
Q psy8868 261 CKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFE 340 (355)
Q Consensus 261 ~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~nFFe 340 (355)
+++|++++++||++|++|++++++.+++|++++++++||+|+||+||++||++++|+ +.||+|||+.+ +..+++||||
T Consensus 240 ~~~v~~l~~eave~E~~~~~~~l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~-~~nP~~wm~~~-~~~~k~nFFe 317 (345)
T 1jk0_B 240 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYN-AVNPFEFMEDV-ATAGKTTFFE 317 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHTTCCCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHh-cccccCcccc
Confidence 478999999999999999999998889999999999999999999999999999994 59999999764 5556679999
Q ss_pred cccccccccccc
Q psy8868 341 TRVMEYQSGGTL 352 (355)
Q Consensus 341 ~~~t~Y~~~~~~ 352 (355)
+||++|++++++
T Consensus 318 ~r~~~Y~~~~~~ 329 (345)
T 1jk0_B 318 KKVSDYQKASDM 329 (345)
T ss_dssp ------------
T ss_pred CCcchhhccccc
Confidence 999999998754
No 5
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii}
Probab=100.00 E-value=9.5e-79 Score=586.23 Aligned_cols=305 Identities=26% Similarity=0.530 Sum_probs=240.9
Q ss_pred ccCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhh
Q psy8868 22 KINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAAN 101 (355)
Q Consensus 22 ~~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~ 101 (355)
..+++|++||+.+++++|++|||+|++|+++.++||+|+|||+++|++||+ +||+.||++++++|++|+++|++|++
T Consensus 28 ~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~~dw~---~Lt~~Er~~~~~~l~~~~~~D~iv~~ 104 (349)
T 2p1i_A 28 ESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFE---KLNVNEKHFIKHVLAFFAASDGIVLE 104 (349)
T ss_dssp -------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHH---HSCTTTHHHHHHHHHHHTTC-----C
T ss_pred cccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred chHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhc
Q psy8868 102 NIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFK 178 (355)
Q Consensus 102 ~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~ 178 (355)
++.+.+++.++.||+++|+++|+++|+||+++||+|+++++.++.+ +|+++.++|.+++|++|+.+++++
T Consensus 105 ~l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~------- 177 (349)
T 2p1i_A 105 NLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWIND------- 177 (349)
T ss_dssp CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSSC-------
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC-------
Confidence 9998899999999999999999999999999999999999977654 899999999999999999988752
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH
Q psy8868 179 TGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258 (355)
Q Consensus 179 ~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~ 258 (355)
++++++++++| +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++.+
T Consensus 178 ------~~~~~~~lva~-~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~----- 245 (349)
T 2p1i_A 178 ------TNSFAERIVAN-ACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP----- 245 (349)
T ss_dssp ------SSCHHHHHHHH-HHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-----
T ss_pred ------chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----
Confidence 23578999996 679999999999999999999999999999999999999999999999998886433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccCCC
Q psy8868 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNF 338 (355)
Q Consensus 259 ~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~nF 338 (355)
+++|++++++||++|++|++++++.+++|++++++++||+|+||+||++||++++|+ ++||+|||+.+ +..+++||
T Consensus 246 --~~~v~~l~~eave~E~~~~~~~l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~-~~nP~~wm~~~-~~~~k~nF 321 (349)
T 2p1i_A 246 --ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFH-SKNPFNWMDLI-SLQGKTNF 321 (349)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTSCSTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSC-CCCSCCC-------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCChHHHHHh-cccccCCc
Confidence 578999999999999999999988889999999999999999999999999999994 69999999754 56556799
Q ss_pred cccccccccccccc
Q psy8868 339 FETRVMEYQSGGTL 352 (355)
Q Consensus 339 Fe~~~t~Y~~~~~~ 352 (355)
||+|+++|++++++
T Consensus 322 Fe~r~~~Y~k~~~~ 335 (349)
T 2p1i_A 322 FEKRVADYQKSGVM 335 (349)
T ss_dssp --------------
T ss_pred ccCCcccccccccc
Confidence 99999999998764
No 6
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=100.00 E-value=1.5e-77 Score=583.51 Aligned_cols=304 Identities=26% Similarity=0.544 Sum_probs=264.1
Q ss_pred CcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhch
Q psy8868 24 NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNI 103 (355)
Q Consensus 24 ~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l 103 (355)
+++|++||+.+++++|++|||+|++|+++.++||.|+|||+++|++||+ +||+.||++++++|++|+++|++|++++
T Consensus 70 ~e~ll~~n~~r~~l~PikY~~~~~ly~k~~~nfW~peEIdls~D~~dw~---~Lt~~Er~~~~~vla~fa~~Dsiv~~nl 146 (390)
T 1h0o_A 70 DEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKPDERHFISHVLAFFAASDGIVNENL 146 (390)
T ss_dssp TCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccCCCcccccCCCCCHHHHHHHHHHHHcCCchhhcchhccHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8868 104 VLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE---IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTG 180 (355)
Q Consensus 104 ~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~ 180 (355)
...+++.++.||+++|+++|+++|+||+++||+|+++++.|+.+ +|+++.++|.|++|++|+.+++++.
T Consensus 147 ~~~~~~~v~~pE~~~~~~~Q~~~EaiHsesYS~il~tl~~d~~e~~~if~~~~~~p~l~~Ka~~i~~~~~~~-------- 218 (390)
T 1h0o_A 147 VERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDK-------- 218 (390)
T ss_dssp HHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcc--------
Confidence 88899999999999999999999999999999999999987654 8999999999999999999988631
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHH
Q psy8868 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEF 260 (355)
Q Consensus 181 ~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~ 260 (355)
+..+++++++| +++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.++.+
T Consensus 219 ----~~~~~~~lva~-~~lEGi~Fys~F~~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~------- 286 (390)
T 1h0o_A 219 ----EATYGERVVAF-AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPA------- 286 (390)
T ss_dssp ----SSCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-------
T ss_pred ----chhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------
Confidence 23488999996 678999999999999999999999999999999999999999999999998776443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccCCCcc
Q psy8868 261 CKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFE 340 (355)
Q Consensus 261 ~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~nFFe 340 (355)
+++|++++++||++|++|++++++.+++|++++++++||+|+||+||++||++++| ++.||+|||+. ++..+++||||
T Consensus 287 ~~~v~el~~eave~E~~~~~~~~~~~~iGl~~~~~~~YI~y~Anr~L~~LG~~~~y-~~~NP~~wm~~-~s~~~ktnFFE 364 (390)
T 1h0o_A 287 EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIF-RVENPFDFMEN-ISLEGKTNFFE 364 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHTTCCCSS-CCCCSCGGGC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCChHHHHh-hcccccCcccc
Confidence 47899999999999999999999988999999999999999999999999999999 46999999964 56666679999
Q ss_pred cccccccccccc
Q psy8868 341 TRVMEYQSGGTL 352 (355)
Q Consensus 341 ~~~t~Y~~~~~~ 352 (355)
+|+++|++++++
T Consensus 365 ~r~t~Y~k~~~~ 376 (390)
T 1h0o_A 365 KRVGEYQRMGVM 376 (390)
T ss_dssp ------------
T ss_pred CCcccccccccc
Confidence 999999998764
No 7
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=5.9e-77 Score=582.49 Aligned_cols=307 Identities=30% Similarity=0.571 Sum_probs=265.2
Q ss_pred ccCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhh
Q psy8868 22 KINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAAN 101 (355)
Q Consensus 22 ~~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~ 101 (355)
..+++|+++|+.+++++|++|||+|++|++++++||+|+|||+++|+.||+. +||+.||++++++|++|+++|++|++
T Consensus 93 ~~~e~ll~~n~~r~~l~PikY~~~~~lykk~~anfW~peEIdls~D~~dw~~--~Lt~~Er~~~~~vLa~fa~~Dsiv~~ 170 (419)
T 1jk0_A 93 EKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNE 170 (419)
T ss_dssp GGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHH--TCCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred hhhCccccCCccccccCCcCcHHHHHHHHHHHHcCCchhhcchhccHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999975 79999999999999999999999999
Q ss_pred chHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhc
Q psy8868 102 NIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFK 178 (355)
Q Consensus 102 ~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~---e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~ 178 (355)
++.+.+++.++.||+++|+++|+++|+||+++||+|+++++.++. ++|+++.++|.|++|++|+.+++++
T Consensus 171 nl~~~l~~~v~~pE~~~~~~~Q~~~EaIHsesYS~il~tl~~d~~e~~~iF~~i~~~p~L~~Ka~~i~~~~~~------- 243 (419)
T 1jk0_A 171 NLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD------- 243 (419)
T ss_dssp HHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHhc-------
Confidence 998889999999999999999999999999999999999998765 4899999999999999999998753
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH
Q psy8868 179 TGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258 (355)
Q Consensus 179 ~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~ 258 (355)
+++++++++++| +++|||+||++|+++++|+++|+|||++++|++|+|||++|+.|++.+++.+. +.|+
T Consensus 244 -----~~~~~~~~lva~-~~lEGI~fsg~Fa~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~-~~~~---- 312 (419)
T 1jk0_A 244 -----ADALFGERLVAF-ASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLK-NKPD---- 312 (419)
T ss_dssp -----SSCCHHHHHHHH-HHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCC----
T ss_pred -----cchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC----
Confidence 134588999996 78899999999999999999999999999999999999999999999999875 3443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccccCCC
Q psy8868 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNF 338 (355)
Q Consensus 259 ~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~~nF 338 (355)
+++|++++++||++|++|++++++.+++|++++++++||+|+||+||++||++++| ++.||+|||+. ++..+++||
T Consensus 313 --~e~v~el~~eave~E~~~~~~~lp~~liGln~~~~~~YI~Y~Anr~L~~LG~~~~y-~~~NP~~wm~~-is~~~ktnF 388 (419)
T 1jk0_A 313 --PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYY-KVENPFDFMEN-ISLAGKTNF 388 (419)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSS-CCCCCCGGGGC----------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCChHHHHH-hcccccccc
Confidence 57899999999999999999999988999999999999999999999999999999 46999999965 666667899
Q ss_pred cccccccccccccc
Q psy8868 339 FETRVMEYQSGGTL 352 (355)
Q Consensus 339 Fe~~~t~Y~~~~~~ 352 (355)
||+|+++|++++++
T Consensus 389 FE~r~t~Y~k~~~~ 402 (419)
T 1jk0_A 389 FEKRVSDYQKAGVM 402 (419)
T ss_dssp --------------
T ss_pred CcCCcccccccccc
Confidence 99999999998765
No 8
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=100.00 E-value=2.1e-75 Score=557.19 Aligned_cols=299 Identities=19% Similarity=0.259 Sum_probs=258.2
Q ss_pred CcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCC
Q psy8868 33 DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT 112 (355)
Q Consensus 33 ~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~ 112 (355)
.-.+|+|++|||+|++|++++++||+|+|||+++|++||+ +||+.||++++++|++|+.+|++|++++.+.+++.++
T Consensus 7 ~~inwn~i~y~~~~~~y~~~~~~fW~peEi~ls~D~~dw~---~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~ 83 (319)
T 3n37_A 7 SAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQ---TLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDAL 83 (319)
T ss_dssp CCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHT---TSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCS
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHHhcChhhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcC
Confidence 3459999999999999999999999999999999999999 9999999999999999999999999999988999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHH
Q psy8868 113 APECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190 (355)
Q Consensus 113 ~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (355)
.||+++|+++|+++|+||+++||+|+++++.+++ ++|+|+.++|++++|++|+.+++++. .+++
T Consensus 84 ~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~--------------~~~~ 149 (319)
T 3n37_A 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGD--------------DPLK 149 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSS--------------CHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHcCc--------------hHHH
Confidence 9999999999999999999999999999998754 68999999999999999999999741 2578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Q psy8868 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270 (355)
Q Consensus 191 ~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ 270 (355)
++++ ++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++++.|+..++++++++++++++
T Consensus 150 ~~va-~~~lEgi~Fys~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~~~~~~~~~e~~~~i~~l~~e 228 (319)
T 3n37_A 150 KKIA-SVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 (319)
T ss_dssp HHHH-HHHHHHTTTHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 8888 678999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCcchHHHhccccc--ccCCCccccccccc
Q psy8868 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY-ERNPFPWMSEMIHIK--KESNFFETRVMEYQ 347 (355)
Q Consensus 271 ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~-~~nP~~w~~~~~~~~--~~~nFFe~~~t~Y~ 347 (355)
||++|++|+++++ +++|++.+ +++||+|+||+||++||++|+|+. .++|.||+..+++.+ +++||||+|+|+|+
T Consensus 229 ave~E~~~~~~~~--~~iGl~~~-~~~yi~y~An~~L~~lG~~~~f~~~~~~~nP~~~~~~~~~~~~~~nFFe~r~~~Y~ 305 (319)
T 3n37_A 229 LYDNELQYTDELY--AETPWADD-VKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYV 305 (319)
T ss_dssp HHHHHHHHHHHHS--TTSSCHHH-HHHHHHHHHHHHHHHTTCCCCSCGGGCCCCHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHHHH--hccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHHhhccCccccCCCCCCChhhhh
Confidence 9999999999998 46899755 999999999999999999999964 244555554567764 57799999999999
Q ss_pred ccccc
Q psy8868 348 SGGTL 352 (355)
Q Consensus 348 ~~~~~ 352 (355)
+|++.
T Consensus 306 ~~~~~ 310 (319)
T 3n37_A 306 MGKAV 310 (319)
T ss_dssp -----
T ss_pred cCCCc
Confidence 98764
No 9
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=100.00 E-value=2e-75 Score=562.43 Aligned_cols=308 Identities=22% Similarity=0.349 Sum_probs=264.6
Q ss_pred cccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHh
Q psy8868 27 IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLG 106 (355)
Q Consensus 27 i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~ 106 (355)
+..+.....+|+|++|||+|++|+++.++||+|+|||+++|++||+ +||+.||++++++|++|+++|++|++++.+.
T Consensus 21 ~~~~~~~~inwn~i~y~~~~~~ykk~~~nfW~peEI~ls~D~~dw~---~Lt~~Er~~~~~vl~f~~~~Dsiv~~~~~~~ 97 (350)
T 4dr0_A 21 MMTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPI 97 (350)
T ss_dssp -CCCCCCCSCSSSCSSSSHHHHHHHHHHTCCCGGGSCCGGGHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccccccccCCCCcccHHHHHHHHHHHHcCCChhhcChhhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344455779999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCH--HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCc
Q psy8868 107 TYRHITAPECRQYLLRQAFEEA-IHTHAYQYIVESLGLDE--LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTK 183 (355)
Q Consensus 107 l~~~~~~~E~~~~~~~q~~~E~-iH~~sYs~il~~l~~~~--~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~ 183 (355)
+++.++.||+++|+++|+++|+ ||+++||+|+++++.++ +++|+++.++|.+++|++|+.++|++.. .+
T Consensus 98 ~~~~v~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~~~~e~~~~f~~~~~~p~l~~Ka~~i~~~y~~~~--------~~ 169 (350)
T 4dr0_A 98 VAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQ--------KD 169 (350)
T ss_dssp HHHHSCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCC--------TT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHhcCHHHHHHHHHHHHHHHhcc--------Cc
Confidence 9999999999999999999999 99999999999999764 5799999999999999999999998642 34
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHH
Q psy8868 184 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263 (355)
Q Consensus 184 ~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~ 263 (355)
+++++++++|+ ++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.++++.|+..+++++++
T Consensus 170 ~~~~~~~~lva-~~~lEGi~FysgF~~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~e~~~e~~~~ 248 (350)
T 4dr0_A 170 DEISLFKAMVA-SVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREF 248 (350)
T ss_dssp CHHHHHHHHHH-HHHHHHTTTHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 57789999999 57899999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCcchHHHhcccccc-cCCCccc
Q psy8868 264 IEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY-ERNPFPWMSEMIHIKK-ESNFFET 341 (355)
Q Consensus 264 i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~-~~nP~~w~~~~~~~~~-~~nFFe~ 341 (355)
+++++++||++|++|++++++ .+|++. ++++||+|+||+||++||++|+|+. ..||+ ||+ +++..+ ++||||+
T Consensus 249 i~~l~~eave~E~~~~~~~~~--~iGl~~-~~~~Yi~y~An~~L~~LG~~~~y~~~~~nP~-~~~-~~~~~~k~~nFFE~ 323 (350)
T 4dr0_A 249 AIDLLNQLYENELEYTEDLYD--QVGLSH-DVKKFIRYNANKALMNLGFDPYFEEEDINPI-VLN-GLNTKTKSHDFFSM 323 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG--GGTCHH-HHHHHHHHHHHHHHHHTTCCCCSCCCCCCHH-HHH-TC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHHHHHcCCCCCCCCCCCCch-HHH-hcccccCcCCCCcC
Confidence 999999999999999999986 389985 6999999999999999999999964 25776 554 565544 5699999
Q ss_pred cccccccccc
Q psy8868 342 RVMEYQSGGT 351 (355)
Q Consensus 342 ~~t~Y~~~~~ 351 (355)
|+++|++|+.
T Consensus 324 r~t~Y~k~~~ 333 (350)
T 4dr0_A 324 KGNGYKKATV 333 (350)
T ss_dssp ----------
T ss_pred chhhhhhccc
Confidence 9999999864
No 10
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=100.00 E-value=4.6e-76 Score=561.84 Aligned_cols=297 Identities=23% Similarity=0.295 Sum_probs=242.4
Q ss_pred cccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchH
Q psy8868 25 KQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIV 104 (355)
Q Consensus 25 ~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~ 104 (355)
.+++|+|+.++. +|++||++|++|+++.++||+|+|||+++|++||+ +||++||++++++|++|+++|++|++++.
T Consensus 16 ~~~~~~~~~r~~-~p~~yp~~~~lykk~~~~fW~peEI~ls~D~~dw~---~Lt~~Er~~~~~vl~~~~~~D~iv~~nl~ 91 (324)
T 4a58_A 16 YKKAGSAMSKLL-YVRDHEGFACLTVETHRNRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFNID 91 (324)
T ss_dssp ---------CCS-CCCCCHHHHHHHHHHHHHCCCGGGCCCHHHHHHGG---GSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHhhc-CCccCHHHHHHHHHHHHcCCChHhcCHhhhHHHHH---hCCHHHHHHHHHHHHHHHHhHHHHHhhHH
Confidence 678999988864 79999999999999999999999999999999999 99999999999999999999999999986
Q ss_pred HhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHH---HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8868 105 LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL-DEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTG 180 (355)
Q Consensus 105 ~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~-~~~---e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~ 180 (355)
.+++.++.||+++|+++|+++|+||+++||+|+++++. ++. ++|+++.++|.+++|++|+.+++++.
T Consensus 92 -~l~~~i~~pE~~~~l~~q~~~E~iHs~sYs~il~tl~~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~-------- 162 (324)
T 4a58_A 92 -ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMTDEALQAKISWLRDKVAAA-------- 162 (324)
T ss_dssp -HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTCGGGHHHHHCCCCCHHHC--------
T ss_pred -HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCc--------
Confidence 79999999999999999999999999999999999974 544 48999999999999999999988752
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh--hCCccccH
Q psy8868 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM--ENPNLWTT 258 (355)
Q Consensus 181 ~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~--e~~~~~~~ 258 (355)
+++.+++++| +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++ +.|.
T Consensus 163 -----~~~~~~lva~-~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~p~---- 232 (324)
T 4a58_A 163 -----VTLPEKILVF-LLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPR---- 232 (324)
T ss_dssp -----SSHHHHHHHH-HHHHHTTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSCC----
T ss_pred -----hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----
Confidence 2478889996 789999999999999999999999999999999999999999999999999987 3443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCcchHHHhccccccc
Q psy8868 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE---RNPFPWMSEMIHIKKE 335 (355)
Q Consensus 259 ~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~---~nP~~w~~~~~~~~~~ 335 (355)
+++|++++++||++|++|++++++ ++.|||++++++||+|+||+||++||++++|+.. .||+||+. ..++
T Consensus 233 --~~~v~~i~~eave~E~~~~~~~~~-~~~~ln~~~~~~Yi~y~An~~L~~LG~~~~y~~~~p~~np~~~~~----~~~~ 305 (324)
T 4a58_A 233 --ATWIQELFRTAVEVETAFIEARGE-GVTLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMT----SIKQ 305 (324)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHST-TCTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCC-----------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcchhhc----cCcc
Confidence 589999999999999999999998 6789999999999999999999999999999543 27899986 3568
Q ss_pred CCCccccccccccccc
Q psy8868 336 SNFFETRVMEYQSGGT 351 (355)
Q Consensus 336 ~nFFe~~~t~Y~~~~~ 351 (355)
+||||+||++|+|+-.
T Consensus 306 ~nFFe~r~~~Y~k~~~ 321 (324)
T 4a58_A 306 TNFFEQESSDYTMLVV 321 (324)
T ss_dssp ----------------
T ss_pred CCCCCCchhhccchhc
Confidence 8999999999998643
No 11
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=100.00 E-value=2.5e-75 Score=548.79 Aligned_cols=280 Identities=24% Similarity=0.514 Sum_probs=264.8
Q ss_pred cCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhc
Q psy8868 23 INKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANN 102 (355)
Q Consensus 23 ~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~ 102 (355)
.+++|+.+|+++++++|++|||+|++|++++++||+|+|||+++|++||+ +||++||++++++|++|+++|++|+++
T Consensus 4 ~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~~dw~---~L~~~Er~~~~~~l~~~~~~D~iv~~~ 80 (286)
T 3olj_A 4 EDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---SLKPEERYFISHVLAFFAASDGIVNEN 80 (286)
T ss_dssp TTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8868 103 IVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKT 179 (355)
Q Consensus 103 l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~---e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~ 179 (355)
+.+.+++.++.||+++|+++|+++|+||+++||+|+++++.+++ ++|+++.++|.+++|++|+.+++++.
T Consensus 81 l~~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~------- 153 (286)
T 3olj_A 81 LVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDK------- 153 (286)
T ss_dssp HHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCS-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-------
Confidence 99889999999999999999999999999999999999998865 48999999999999999999988641
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHH
Q psy8868 180 GNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259 (355)
Q Consensus 180 ~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~ 259 (355)
+.++++++++|+ ++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++++.+
T Consensus 154 -----~~~~~~~lva~~-~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~------ 221 (286)
T 3olj_A 154 -----EATYGERVVAFA-AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPS------ 221 (286)
T ss_dssp -----SSCHHHHHHHHH-HHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC------
T ss_pred -----hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------
Confidence 234788999975 79999999999999999999999999999999999999999999999999987654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHH
Q psy8868 260 FCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWM 326 (355)
Q Consensus 260 ~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~ 326 (355)
++++++++++||++|++|++++++.+++|||++++++||+|+||+||++||++++| +++||+|||
T Consensus 222 -~~~v~~~~~eave~E~~~~~~~l~~~~~Gl~~~~~~~yi~y~An~~L~~lG~~~~f-~~~nP~~~m 286 (286)
T 3olj_A 222 -EERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF-RVENPFDFM 286 (286)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHHTCCCSS-CCCCCCTTC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCC
Confidence 47899999999999999999999888999999999999999999999999999999 678999997
No 12
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=100.00 E-value=9.6e-75 Score=554.52 Aligned_cols=299 Identities=20% Similarity=0.307 Sum_probs=257.4
Q ss_pred CcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCC
Q psy8868 33 DVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT 112 (355)
Q Consensus 33 ~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~ 112 (355)
.-.+|+|++||++|++|++++++||+|+|||+++|++||+ +||+.||++++++|++|+++|++|++++.+.+++.++
T Consensus 17 ~~inwn~i~y~~~~~~y~~~~~~fW~peEI~ls~D~~dw~---~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~ 93 (329)
T 3dhz_A 17 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWN---KMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAE 93 (329)
T ss_dssp CCCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCS
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHhhcChhhhHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence 4669999999999999999999999999999999999999 9999999999999999999999999999888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHH
Q psy8868 113 APECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLK 190 (355)
Q Consensus 113 ~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (355)
.||+++|+++|+++|+||+++||+|+++++.+++ ++|+|+.++|++++|++|+.+++++ ..+++
T Consensus 94 ~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~--------------~~~~~ 159 (329)
T 3dhz_A 94 TMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNG--------------DDPLK 159 (329)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS--------------SCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHcC--------------CcHHH
Confidence 9999999999999999999999999999998754 6899999999999999999999863 12578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Q psy8868 191 SLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLK 270 (355)
Q Consensus 191 ~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ 270 (355)
++++ ++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++++.|+..++++++++++++++
T Consensus 160 ~~va-~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~~~~l~~e 238 (329)
T 3dhz_A 160 KKVA-STLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238 (329)
T ss_dssp HHHH-HHHHHHTTTHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 8888 678999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCcchHHHhccccc--ccCCCccccccccc
Q psy8868 271 AIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY-ERNPFPWMSEMIHIK--KESNFFETRVMEYQ 347 (355)
Q Consensus 271 ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~-~~nP~~w~~~~~~~~--~~~nFFe~~~t~Y~ 347 (355)
||++|++|++++++ ++|++.+ +++||+|+||+||++||++|+|+. .++|.||+..+++.+ +++||||+|+|+|+
T Consensus 239 ave~E~~~~~~~~~--~iGl~~~-~~~yi~y~An~~L~~lG~~~~y~~~~~~~nP~~~~~~~~~~~~~~nFFe~r~t~Y~ 315 (329)
T 3dhz_A 239 LYENEIEYTEDIYD--DLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNADENHDFFSGSGSSYV 315 (329)
T ss_dssp HHHHHHHHHHHHHT--TTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHh--ccCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHHHhccCccccCCCCCCChhhhh
Confidence 99999999999984 6899754 999999999999999999999964 244555554567764 57799999999999
Q ss_pred ccccc
Q psy8868 348 SGGTL 352 (355)
Q Consensus 348 ~~~~~ 352 (355)
+|++.
T Consensus 316 ~~~~~ 320 (329)
T 3dhz_A 316 IGKAE 320 (329)
T ss_dssp -----
T ss_pred cCCcc
Confidence 98764
No 13
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=100.00 E-value=4.6e-74 Score=545.54 Aligned_cols=281 Identities=25% Similarity=0.507 Sum_probs=257.2
Q ss_pred ccCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhh
Q psy8868 22 KINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAAN 101 (355)
Q Consensus 22 ~~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~ 101 (355)
..+++|++||+.+++++|++|||+|++|++++++||+|+|||+++|++||+ +||+.||++++++|++|+++|++|++
T Consensus 27 ~~~e~ll~~n~~r~~~~p~ky~~~~~ly~k~~~~fW~peEIdls~D~~dw~---~Lt~~Er~~~~~~l~~~~~~D~iv~~ 103 (311)
T 2o1z_A 27 EANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNDNEKHFIKHVLAFFAASDGIVLE 103 (311)
T ss_dssp GGGCGGGSCCCSCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHH---HSCHHHHHHHHHHHHHHHHC------
T ss_pred hhhCchhcCCCcccccCCCCcHHHHHHHHHHHHcCCcHhhcchhccHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred chHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhc
Q psy8868 102 NIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL---EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFK 178 (355)
Q Consensus 102 ~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~---e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~ 178 (355)
++.+.+++.++.||+++|+++|+++|+||+++||+++++++.++. ++|+++.++|.+++|++|+.+++++
T Consensus 104 ~l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~------- 176 (311)
T 2o1z_A 104 NLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIND------- 176 (311)
T ss_dssp -CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTSHHHHHHHHHHHHHSST-------
T ss_pred hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC-------
Confidence 998889999999999999999999999999999999999997764 4699999999999999999998752
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccH
Q psy8868 179 TGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258 (355)
Q Consensus 179 ~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~ 258 (355)
++++++++++| +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++ .|+
T Consensus 177 ------~~~~~~~lva~-~~lEGi~fysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~-~~~---- 244 (311)
T 2o1z_A 177 ------TNSFAERIVAN-ACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLEN-KLP---- 244 (311)
T ss_dssp ------TSCHHHHHHHH-HHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS-CCC----
T ss_pred ------ccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC----
Confidence 23478999996 579999999999999999999999999999999999999999999999999885 342
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHH
Q psy8868 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMS 327 (355)
Q Consensus 259 ~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~ 327 (355)
+++|++++++||++|++|++++++.+++|++.+.+++||+|+||+||++||++++| +++||+|||+
T Consensus 245 --~~~i~~l~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~LG~~~~y-~~~nP~~wm~ 310 (311)
T 2o1z_A 245 --EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIF-HAKNPFNWMD 310 (311)
T ss_dssp --HHHHHHHHHHHHHHHHTTBTTTBCCTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSS-CCCCCCTTTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCcchhc
Confidence 48999999999999999999999988999999999999999999999999999999 4699999995
No 14
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=100.00 E-value=7.7e-69 Score=506.68 Aligned_cols=277 Identities=20% Similarity=0.305 Sum_probs=257.1
Q ss_pred CCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcC
Q psy8868 32 TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHI 111 (355)
Q Consensus 32 ~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~ 111 (355)
....+|+|++|||+|++|++++++||+|+|||+++|++||+ +||+.||++++++|++|+++|++|++++.+.+++.+
T Consensus 15 ~~~inwn~i~y~~~~~~y~k~~~~fW~peEI~ls~D~~dw~---~Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~ 91 (296)
T 3mjo_A 15 VKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWN---KMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDA 91 (296)
T ss_dssp CCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGC
T ss_pred cccccCCCCccHHHHHHHHHHHHcCCCHHHcChhccHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 45679999999999999999999999999999999999999 999999999999999999999999999998899999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHH
Q psy8868 112 TAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLL 189 (355)
Q Consensus 112 ~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 189 (355)
+.||+++|+++|+++|+||+++||+++++++.+++ ++|+++.++|++++|++|+.+++++ ..++
T Consensus 92 ~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~--------------~~~~ 157 (296)
T 3mjo_A 92 ETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNG--------------DDPL 157 (296)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS--------------SCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhcC--------------CcHH
Confidence 99999999999999999999999999999998754 6899999999999999999999863 1257
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHH
Q psy8868 190 KSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFL 269 (355)
Q Consensus 190 ~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~ 269 (355)
+++++ ++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++++.|+..+++++++++++++
T Consensus 158 ~~~va-~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~~~e~~~~v~~l~~ 236 (296)
T 3mjo_A 158 KKKVA-STLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMY 236 (296)
T ss_dssp HHHHH-HHHHHHTHHHHHTHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHH
Confidence 88888 67899999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCcchHHHhc
Q psy8868 270 KAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE-RNPFPWMSEM 329 (355)
Q Consensus 270 ~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~-~nP~~w~~~~ 329 (355)
+||++|++|++++++ ++|++.+ +++||+|+||+||++||++|+|+.. ++-.|++.+.
T Consensus 237 eave~E~~~~~~~~~--~iGl~~~-~~~yi~y~An~~L~~LG~~~~y~~~~~~~~p~~~~~ 294 (296)
T 3mjo_A 237 DLYENEIEYTEDIYD--DLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 294 (296)
T ss_dssp HHHHHHHHHHHHHHT--TTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCchhhcCHHHHhc
Confidence 999999999999984 6899755 9999999999999999999999653 3445776543
No 15
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=100.00 E-value=3.2e-63 Score=473.08 Aligned_cols=275 Identities=20% Similarity=0.266 Sum_probs=247.7
Q ss_pred cccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchH
Q psy8868 25 KQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIV 104 (355)
Q Consensus 25 ~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~ 104 (355)
++++..+..+++++|++ +|+++.++||+|+|||+++|++||+ +||+.||++++++|++|+.+|++|++++.
T Consensus 15 ~~~l~~~~~~~~~~p~~------ly~k~~~~fW~peEIdls~D~~dw~---~Lt~~Er~~~~~vL~~ft~~D~iv~~nl~ 85 (323)
T 3ee4_A 15 SGSLAAGGLNWASLPLK------LFAGGNAKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQ 85 (323)
T ss_dssp CGGGSTTCCCTTSHHHH------HHHHHHHTCCCGGGSCCTTHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred chhccCCCCCcccchHH------HHHHHHHcCCChHhcChhhhHHHHH---HCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57888888888999997 9999999999999999999999999 99999999999999999999999999998
Q ss_pred HhHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHH-HHHHHHHhhhhhhccC
Q psy8868 105 LGTYRHITA---PECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEF-LIPFIDVLTDLKFKTG 180 (355)
Q Consensus 105 ~~l~~~~~~---~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~-i~~~~~~~~~~~~~~~ 180 (355)
.+++.++. ||+++|+++|+++|+||+++||+++++++.+++ +|+++.++|.+++|..+ +.+.+..+.
T Consensus 86 -~~~~~v~~e~~pE~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~-~f~~~~~~p~lr~k~~~~l~~~~~~~~------- 156 (323)
T 3ee4_A 86 -PFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-LHRYLDDLPAYRQIFYAELPECLNALS------- 156 (323)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC-CGGGGTTCHHHHHHHHTHHHHHHHHHH-------
T ss_pred -HHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHcCHHHHHHHHHHHHHHHHhhc-------
Confidence 67777764 999999999999999999999999999998765 89999999999888642 223343322
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHH
Q psy8868 181 NTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTE 259 (355)
Q Consensus 181 ~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~ 259 (355)
++++++++++++++|++++||++|||||++++ +|+++|+|||++++|++|.|||++|+.|++.+++++++++|+.+++
T Consensus 157 ~~~~~~~~~~~lvaf~~~lEGi~FysgF~~~~~~l~~rg~m~G~~~~i~lI~RDE~~H~~f~~~l~~~l~~e~p~~~~~- 235 (323)
T 3ee4_A 157 ADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTV- 235 (323)
T ss_dssp HCCCHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHH-
Confidence 13456779999999877899999999997555 8999999999999999999999999999999999999999987665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q psy8868 260 FCKEIEQLFLKAIELEYYYAEDTMPKGIL-GLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319 (355)
Q Consensus 260 ~~~~i~~l~~~ave~E~~~~~~~~~~~i~-Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~ 319 (355)
+++++++++++||++ ++|+.++++++++ |||++++++||+|+||+||++||+++.||..
T Consensus 236 ~~~~v~el~~eave~-~e~~~~~~~~~~~lGl~~~~~~~Yi~y~AnrrL~~LG~~~~f~~~ 295 (323)
T 3ee4_A 236 FETRMNELIPLALRL-IEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVA 295 (323)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999999999 9999999987775 9999999999999999999999999999753
No 16
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=98.29 E-value=2.8e-05 Score=77.34 Aligned_cols=220 Identities=12% Similarity=0.042 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHH--
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE---LEIFN-- 150 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~---~e~f~-- 150 (355)
.+++.-+.+++..++.+..++-...... ..+.+..+.+.++.+.++|+.+|.+|++.-.++...++... +. |+
T Consensus 83 ~~dprw~~~lk~~~~~~~~~Ey~a~~~~-a~~~r~ap~~~~rnaaa~q~lDElRHaQ~~~~~~~el~~~~~~~~~-f~~~ 160 (491)
T 2inc_A 83 RADPGWVSTMQLHFGAIALEEYAASTAE-ARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDW-AHKA 160 (491)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGGGGH-HHHG
T ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccc-ccHH
Confidence 7888989988888898888885554433 35778999999999999999999999999888777754321 11 22
Q ss_pred HHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccchHHHHHH
Q psy8868 151 AYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR-QNKMIGSSELYQY 229 (355)
Q Consensus 151 ~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~-~g~l~g~~~~i~~ 229 (355)
...++|..+.- .+.+++.. .+. ..++.+++.+++.|+++.---|..+...+. +|- +-+..++..
T Consensus 161 ~~~~~p~~~~~----R~~~ed~~------~t~----D~~E~~ialnlv~E~~~tnll~~~f~~~Aa~nGD-~lt~~v~~s 225 (491)
T 2inc_A 161 IHTNEWAAIAA----RSFFDDMM------MTR----DSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGD-HTFASLISS 225 (491)
T ss_dssp GGSCCHHHHHH----HHHHHHHT------TSS----CHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HhhcCcccHHH----HHHHHHhh------ccc----cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC-hhHHHHHHH
Confidence 22345543221 12222210 010 145555665777798554444433334433 343 449999999
Q ss_pred HHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCCCC-CHHHHHHHHHHHHH
Q psy8868 230 ILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY----AEDTMPKGILGL-NVKTFKSYLRFIAN 304 (355)
Q Consensus 230 I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~----~~~~~~~~i~Gl-~~~~~~~yv~y~an 304 (355)
|..||++|..+|..+++.+++. ++ .++.+++|-.-+-.+...-..+ .++..+.+.--. ..+.+.++|.-..-
T Consensus 226 iq~DEaRH~~~g~~ll~~ll~d-~~--~~~~Q~wld~w~wra~~a~~~l~g~~~dy~~p~~~r~~s~~e~~~~Wv~~~~~ 302 (491)
T 2inc_A 226 IQTDESRHAQQGGPSLKILVEN-GK--KDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFE 302 (491)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHT-TC--HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-cC--chHHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999864 21 2334677777666666654444 334344211111 23555555554455
Q ss_pred HHHHHCCCCCC
Q psy8868 305 CRMKQIGIKQI 315 (355)
Q Consensus 305 ~~L~~lG~~~~ 315 (355)
++|..+|++.+
T Consensus 303 ~~L~~lGL~~P 313 (491)
T 2inc_A 303 RQLLDLGLDKP 313 (491)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHcCCCCC
Confidence 67999999754
No 17
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=98.11 E-value=0.0002 Score=71.31 Aligned_cols=219 Identities=14% Similarity=0.082 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHH
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG--------LDELE 147 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~--------~~~~e 147 (355)
.+++.-+.+++..+++++.++-...... ..+.+..+.++++.+.++|+.+|.+|++.-.++...+. .+.+
T Consensus 80 ~~dprW~~~Lk~~l~av~~~EY~a~~~~-a~~~r~ap~~~~rnaaa~qalDElRHaQ~~~~l~k~~~~~~~dp~Gfd~~- 157 (512)
T 1mty_D 80 RVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDA- 157 (512)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTTH-
T ss_pred cCCHHHHHHHHHHHcccCHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCHH-
Confidence 7999999999999999988886555533 35788999999999999999999999998555444443 2221
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccchHHH
Q psy8868 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR-QNKMIGSSEL 226 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~-~g~l~g~~~~ 226 (355)
-.++.++|..+-=-+.+.+... +. ..++.+++.+++.|.++.---|..+...+. +|-+. +..+
T Consensus 158 -r~~~~~~p~~q~~R~~fe~~~~----------t~----D~~E~~valn~v~E~~~tnll~~~~~~~Aa~nGD~~-tptv 221 (512)
T 1mty_D 158 -RRTRTIGPLWKGMKRVFSDGFI----------SG----DAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEI-TPTV 221 (512)
T ss_dssp -HHHGGGSSHHHHHHHHHTHHHH----------SS----CHHHHHHHHTTTHHHHTHHHHHHHHHHHHHHTTCCH-HHHH
T ss_pred -HHHhccCCchhhhHHHHHHHhh----------cC----ChHHHhhhhhhhHHHHhHHHHHHHHHHHHHHcCCHH-HHHH
Confidence 2244556654332222111111 10 145555665777788665444443334433 45443 8999
Q ss_pred HHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHH----HhhcCCCCCCCCHHHHHHHHHHH
Q psy8868 227 YQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYA----EDTMPKGILGLNVKTFKSYLRFI 302 (355)
Q Consensus 227 i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~----~~~~~~~i~Gl~~~~~~~yv~y~ 302 (355)
+.-|..||++|...|..+++.+++. | ...+.++++|-.-+-.+...-..+. ++..+... -=.++.+..|+.-.
T Consensus 222 ~~siqsDEaRH~~~g~~ll~~Lled-~-~Nr~~lQ~wldkw~wra~~af~~l~g~~~dy~~~~R~-~s~~e~~~rWv~ed 298 (512)
T 1mty_D 222 FLSIETDELRHMANGYQTVVSIAND-P-ASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKV-EPWVKTWDRWVYED 298 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCS-SCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-c-ccHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccccc-chHHHHHHHHHHHH
Confidence 9999999999999999999999863 2 2234456666666666555544332 22211111 11245555554432
Q ss_pred ----HHHHHHHCCCCCC
Q psy8868 303 ----ANCRMKQIGIKQI 315 (355)
Q Consensus 303 ----an~~L~~lG~~~~ 315 (355)
.-.+|..+|++.+
T Consensus 299 ~~~~~~~~L~~lGL~~P 315 (512)
T 1mty_D 299 WGGIWIGRLGKYGVESP 315 (512)
T ss_dssp TTTHHHHTTGGGTCCCC
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 3345899999754
No 18
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=98.08 E-value=0.00073 Score=63.24 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEI 155 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~ 155 (355)
.||+.-|..+.+.++.++-.+-+.+.-+. ......|..|.+..++..+..|.-|.+.+..++..++.+++++......-
T Consensus 24 ~mP~~Yr~~L~~ll~~laD~ELi~~~rl~-ew~~~AP~Lee~iALa~ia~DE~GHa~~l~~~a~~lG~d~d~l~~~~r~~ 102 (311)
T 3pvt_A 24 WMPDAYRKTLIRQIGQHAHSEIVGMLPEG-NWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDG 102 (311)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTHHHHH-TTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcc
Confidence 69999999999999999776655555443 35578899999999999999999999999899999998876644332221
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCccchHHHHHHHHhch
Q psy8868 156 KSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALG-RQNKMIGSSELYQYILRDE 234 (355)
Q Consensus 156 p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~-~~g~l~g~~~~i~~I~RDE 234 (355)
..| +..-+. ++ ..++...++- +.+ +.+++..++.. .+.-.+-++.+...|++.|
T Consensus 103 ---~~~------~~~lfe-------~P--~~dWad~vvr-~~l------~D~~a~~~~~~L~~ss~~plA~~a~ki~kEE 157 (311)
T 3pvt_A 103 ---RMK------YSSIFN-------YP--TLSWADIGVI-GWL------VDGAAIVNQVALCRTSYGPYARAMVKICKEE 157 (311)
T ss_dssp ---SSC------CCGGGG-------SC--CCSHHHHHHH-HHH------HHHHHHHHHHTTTTCSBHHHHHHHHHHHHHH
T ss_pred ---hhh------hhhHHh-------CC--CCCHHHHHHH-HHH------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 000 000000 11 1236655543 444 34455444332 3456789999999999999
Q ss_pred hhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCCCCCCHHHHHHHHH
Q psy8868 235 SMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMP--------------KGILGLNVKTFKSYLR 300 (355)
Q Consensus 235 ~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~--------------~~i~Gl~~~~~~~yv~ 300 (355)
+.|..++...+..|.... ++.++.+++|++.=--+...+|. -||.+.+.+++.+--.
T Consensus 158 ~yH~~~g~~wv~rL~~gt---------~esr~r~Q~Al~~~wp~~~elFg~~~~~s~~~~~~~~~Gi~~~~n~eLR~~w~ 228 (311)
T 3pvt_A 158 SFHQRQGFEACMALAQGS---------EAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFV 228 (311)
T ss_dssp HHHHHHHHHHHHHHHTSC---------HHHHHHHHHHHHHHHHHHHHTTCSCGGGCTTHHHHHHTTSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHCCCCCCCHHHHHHHHH
Confidence 999999999999998643 23345555666543344444443 2344467788876555
Q ss_pred HHHHHHHHHCCCCCC
Q psy8868 301 FIANCRMKQIGIKQI 315 (355)
Q Consensus 301 y~an~~L~~lG~~~~ 315 (355)
-.....|..+|+.-+
T Consensus 229 ~~v~~~l~~~gL~~P 243 (311)
T 3pvt_A 229 DNTVPQVEMLGMTVP 243 (311)
T ss_dssp HHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHcCCCCC
Confidence 567788999999765
No 19
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=97.95 E-value=0.0016 Score=61.20 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhc---CCCCCcc-ccccc------chhhh----cCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHh
Q psy8868 43 NWAWDRYLSSCA---NHWMPQE-INMQR------DIELW----KNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTY 108 (355)
Q Consensus 43 ~~~~~ly~k~~~---~fW~p~E-i~l~~------D~~dw----~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~ 108 (355)
||+-+......+ ..|.|++ |+.++ +.++| + +||+.-.-++...+--=-.+.+.++ .+.
T Consensus 20 ~~~~~~~~~hL~p~~~~Wqp~D~lPw~~~~~F~~~~~~~~~~~~---~l~d~~~v~lv~~~iTEd~LPtY~~-----~L~ 91 (338)
T 2uw1_A 20 DWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAK---EIPDDYFVVLVGDMITEEALPTYMS-----MLN 91 (338)
T ss_dssp HHHHHHTGGGSCCGGGCCCGGGGSCCTTSTTHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHTHHHHHH-----HHT
T ss_pred HHHHHHHHHHhhhHhhcCCchhcCCCccccchhhhcccccHhhc---cCCHHHHHHHHHHHHhhhcchHHHH-----HHH
Confidence 455555443333 6899998 66555 45566 4 7888855444332211112222221 122
Q ss_pred hcCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8868 109 RHIT--------APECRQYLLRQAFEEAIHTHAYQYIVESLG-LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKT 179 (355)
Q Consensus 109 ~~~~--------~~E~~~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~ 179 (355)
..+. ++....+...+.++|+.|+.+-..++-.-+ .|+.++... +...+.+ .|+.
T Consensus 92 ~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~lE~~---------~~~~i~~--------Gfd~ 154 (338)
T 2uw1_A 92 RCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKT---------IQYLIGS--------GMDI 154 (338)
T ss_dssp TSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHH---------HHHHHHH--------CCCC
T ss_pred HHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHH---------HHHHHhC--------CCCC
Confidence 3322 567888999999999999999999998655 355433110 1112221 1222
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc
Q psy8868 180 GNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255 (355)
Q Consensus 180 ~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~ 255 (355)
++.. +.+..++ |.++-|..-+. ++.-+--+++..-=|.++++...|++||.+|..|...+++.++...|+.
T Consensus 155 ~~~~---~p~~~~v-y~sfQE~AT~v-sh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dpd~ 225 (338)
T 2uw1_A 155 KSEN---SPYLGFI-YTSFQERATFI-SHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDT 225 (338)
T ss_dssp CCTT---CHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCCC---CHHHHHH-HHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 2221 2344444 47777886652 3333333333223688999999999999999999999999999877753
No 20
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B*
Probab=97.86 E-value=0.0033 Score=59.22 Aligned_cols=211 Identities=9% Similarity=-0.109 Sum_probs=135.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCH---HHHH
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH---AYQYIVESLGLDE---LEIF 149 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~---sYs~il~~l~~~~---~e~f 149 (355)
.|++.-++.++..++-+-..+--...+. ..+.+..+.+.++.+..+|++.|-.|+. -|++-+..-.++. +.-=
T Consensus 105 ~ld~~w~~~l~~~l~p~~~~e~~~~~~~-a~~~r~~~~~~i~n~~~~qa~DelR~aQ~~~y~~~~L~~~~~~~g~~~~~k 183 (322)
T 2inc_B 105 MLTREWVETLARFYTPARYLFHALQMGS-VYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRER 183 (322)
T ss_dssp GSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSHH
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHH
Confidence 6777777777777766666553322222 3467888999999999999999999999 6777665444321 1112
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCccchHHHHH
Q psy8868 150 NAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQNKMIGSSELYQ 228 (355)
Q Consensus 150 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~g~l~g~~~~i~ 228 (355)
..+.++|..+---..+ ++.. .+ ..+.+.+++.++++|+++----|.-+- ..+.+| =..+..++.
T Consensus 184 ~~w~~~p~wq~~R~~~----E~~~------~~----~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nG-D~~t~~l~~ 248 (322)
T 2inc_B 184 DVWENDPAWQGFRELI----EKAL------IA----WDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEG-DTLLGLLAQ 248 (322)
T ss_dssp HHHHHCHHHHHHHHHH----HHHT------TC----CSHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHhcCchhHHHHHHH----HHhh------cc----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHCC-ChhHHHHHH
Confidence 3556777655432222 2211 01 126777777788889987543333332 222344 256778889
Q ss_pred HHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8868 229 YILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308 (355)
Q Consensus 229 ~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~ 308 (355)
.+.-||++|...+..+++.+..+ |+ ..+-++.|+..-+..+...=..++... .. .+ ...+-++-....++.
T Consensus 249 s~q~D~~Rh~~~~~alvk~~~~~-~~-N~~~lq~wi~~w~~ra~~A~~~l~~~~-~~--~~----~~~~~~~~~~~~~~~ 319 (322)
T 2inc_B 249 AQKRDAERHRRWSSALVKMALEK-EG-NREVLQKWVAKWEPLADKAIEAYCSAL-PD--GE----NAIVEAKSASRYVRQ 319 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TT-HHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--HH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHh-cC--CC----cHHHHHHHHHHHHHH
Confidence 99999999999999999999876 32 234456777777777777655554332 21 11 234677777788888
Q ss_pred HCC
Q psy8868 309 QIG 311 (355)
Q Consensus 309 ~lG 311 (355)
.||
T Consensus 320 ~~g 322 (322)
T 2inc_B 320 MMG 322 (322)
T ss_dssp TTC
T ss_pred hcc
Confidence 877
No 21
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C
Probab=97.53 E-value=0.017 Score=54.61 Aligned_cols=212 Identities=13% Similarity=0.092 Sum_probs=135.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---H-HHHH
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL---E-IFNA 151 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~---e-~f~~ 151 (355)
.|++.-++.++..++-+...+--...+. ..+....+.+.++.+..+|++.|-.|+..-+++.-.+..+.. + --..
T Consensus 110 ~ld~~w~~~l~~~~~plr~~E~ga~~~~-a~~~r~~~~~~i~na~~fqa~DelRhaQ~ls~~~l~l~~~~g~~~~~~k~~ 188 (333)
T 3u52_C 110 RLSEETQKQLLRLLVPLRHVELGANMNN-AKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKAY 188 (333)
T ss_dssp TSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcchHhHHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 7999999999988888887774443323 357789999999999999999999999977776666643321 1 1223
Q ss_pred HhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcC-CccchHHHHHH
Q psy8868 152 YHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL-ALGRQN-KMIGSSELYQY 229 (355)
Q Consensus 152 ~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~-~l~~~g-~l~g~~~~i~~ 229 (355)
+.++|.-+- +.+++++... + ..+.+.+++-++++|+++----|.-+. ..+.+| -+. + ++--
T Consensus 189 W~~dp~Wq~----~R~~~Ed~~~------~----~Dw~E~~vA~nlv~E~ll~~L~~~~~~~~aa~~gd~~~--~-~~~s 251 (333)
T 3u52_C 189 WMDDEMWQP----MRKLVEDTLV------V----DDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDV--S-MLTE 251 (333)
T ss_dssp HHHCTTTHH----HHHHHHHHTT------C----CCHHHHHHHHHTHHHHHHHHHHHTHHHHHHHTTTCGGG--G-GTSH
T ss_pred HHhCcchHH----HHHHHHHHHh------c----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcee--h-hhHH
Confidence 456775442 2233333210 0 126677777788899987544443332 233333 333 2 4444
Q ss_pred HHhc-hhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8868 230 ILRD-ESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMK 308 (355)
Q Consensus 230 I~RD-E~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~ 308 (355)
++.| |++|...+..+++.+..+.|+ ..+-++.|+.+-+..+...=.-..... +| .+. .+-++-....++.
T Consensus 252 ~q~d~~~Rh~~~~~alvk~ll~~~~~-N~~~lq~Wi~~W~~ra~~al~pl~~~~-----~~--~~~-~~~~~~~~~~~~~ 322 (333)
T 3u52_C 252 FMRDWYKESLRWTNAMMKAVAGESET-NRELLQKWIDHWEPQAYEALKPLAEAS-----VG--IDG-LNEARAELSARLK 322 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHTT-----TC--HHH-HHHHHHHHHHHHG
T ss_pred HhhhHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh-----cC--chH-HHHHHHHHHHHHH
Confidence 5555 999999999999999876432 223356777777777766433333222 22 222 4557778888999
Q ss_pred HCCCCC
Q psy8868 309 QIGIKQ 314 (355)
Q Consensus 309 ~lG~~~ 314 (355)
.||+++
T Consensus 323 ~~gl~~ 328 (333)
T 3u52_C 323 KFELQS 328 (333)
T ss_dssp GGTCCC
T ss_pred HCCCCc
Confidence 999976
No 22
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=97.52 E-value=0.0016 Score=64.56 Aligned_cols=221 Identities=15% Similarity=0.117 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH----H
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFN----A 151 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~----~ 151 (355)
++++.-..+++..++.++.++-.... ....+.+.++.++++.++.+|+.+|.+|+..=.+....+..+... |+ +
T Consensus 84 ~ldp~W~~~Lk~~~~av~~~Ey~a~~-g~A~~~R~aps~~~rn~~~fQ~~DElRHaQ~q~y~~~~l~~~~~g-Fd~~~r~ 161 (500)
T 3ge3_A 84 NSDPGWISTLKSHYGAIAVGEYAAVT-GEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQ-FDWAWRA 161 (500)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGG-GGHHHHG
T ss_pred cCCHHHHHHHHHHhcccchHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-cChHHHH
Confidence 68888899999999999999955543 334677899999999999999999999999877777777653221 32 2
Q ss_pred HhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccchHHHHHHH
Q psy8868 152 YHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR-QNKMIGSSELYQYI 230 (355)
Q Consensus 152 ~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~-~g~l~g~~~~i~~I 230 (355)
+.+ |.-+ ..-..+.++++.. +. ..++.+++.+++.|.++=-.-|.-+...+. +| =..+..++.-+
T Consensus 162 ~~d-~~W~--~~~~R~~fE~~~~------t~----Dw~E~~valnlvfEp~~tnll~v~l~~~Aa~NG-D~~tptl~~S~ 227 (500)
T 3ge3_A 162 YHS-NEWA--AIAAKHFFDDIIT------GR----DAISVAIMLTFSFETGFANMQFLGLAADAAEAG-DYTFANLISSI 227 (500)
T ss_dssp GGS-CCHH--HHHHHHHHHHHTT------SS----CHHHHHHHTCCCCCCCCHHHHHTHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HhC-chhh--hhHHHHHHHHHHc------cC----CHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcC-ChhhHHHHHHH
Confidence 322 2211 0011123333220 11 145566665666665433222222223333 34 34577888889
Q ss_pred HhchhhHHhHHHHHHHHHHhh-CCccccHHHHHHHHHHHHHHHHHHHHHH----HhhcCCCCCCCC-HHHHHHHHHHHHH
Q psy8868 231 LRDESMHCNFGIDLINTIKME-NPNLWTTEFCKEIEQLFLKAIELEYYYA----EDTMPKGILGLN-VKTFKSYLRFIAN 304 (355)
Q Consensus 231 ~RDE~~H~~~~~~l~~~l~~e-~~~~~~~~~~~~i~~l~~~ave~E~~~~----~~~~~~~i~Gl~-~~~~~~yv~y~an 304 (355)
..||++|...|..+++.+++. .| +.++++|-.-+-.+...=..++ ++..+..---.+ ++-+.++|.-.-=
T Consensus 228 qsDe~Rh~~~g~alv~~lle~~~~----~n~q~wld~wfwra~~a~~al~G~~~dY~~p~~~r~~S~~e~~~ewi~~~~~ 303 (500)
T 3ge3_A 228 QTDESRHAQQGGPALQLLIENGKR----EEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFE 303 (500)
T ss_dssp HHHHHHHGGGHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHHHTTTTHH
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH
Confidence 999999999999999998854 23 2255666555555444433333 333331011122 2344443222233
Q ss_pred HHHHHCCCCCCC
Q psy8868 305 CRMKQIGIKQIF 316 (355)
Q Consensus 305 ~~L~~lG~~~~f 316 (355)
++|..+|++++-
T Consensus 304 ~~L~~~Gl~~P~ 315 (500)
T 3ge3_A 304 RSLIDLGLDKPW 315 (500)
T ss_dssp HHHHHTTCCCCT
T ss_pred HHHHHhCCCCcH
Confidence 489999998763
No 23
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=97.48 E-value=0.041 Score=47.26 Aligned_cols=197 Identities=14% Similarity=0.188 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHH
Q psy8868 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL-----EIFNAY 152 (355)
Q Consensus 78 s~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~-----e~f~~~ 152 (355)
|+.-|++|.|+=+--..++...-+|+. .+...+|..... +..-+-||++|.+.|.-.=+.+...++ +.|...
T Consensus 28 s~~YkdAYSRINaIVIEGEqeA~dNyi-~la~llP~~~dE--L~rLakME~rH~kgF~aCGrNL~V~pDm~fA~~fF~~L 104 (244)
T 2oc5_A 28 SDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTLLPDHVEE--LKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPL 104 (244)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHH--HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeeEechHHHHHhHH-HHHHHCcccHHH--HHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 567789999999999999988888886 477777766444 667889999999999999999976543 223222
Q ss_pred hhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHh
Q psy8868 153 HEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILR 232 (355)
Q Consensus 153 ~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~R 232 (355)
+.+ . +++ ..+ + +...+++.=+.++|. +..++|.+. +.- .=|=-.++-.-+.+
T Consensus 105 H~n--F-q~A------~~~------------g--kv~TCLlIQaLiIE~-FAIaAYniY--IpV--AD~FARkITegVVk 156 (244)
T 2oc5_A 105 RDN--F-QTA------LGQ------------G--KTPTCLLIQALLIEA-FAISAYHTY--IPV--SDPFARKITEGVVK 156 (244)
T ss_dssp HHH--H-HHH------HHT------------T--CHHHHHHHHHTHHHH-HHHHHHHHH--GGG--SCHHHHHHHHHHHH
T ss_pred HHH--H-HHH------Hhc------------C--CeeehHHHHHHHHHH-HHHHHHhhc--ccc--ccHHHHHHHHhHHh
Confidence 211 0 010 000 0 123333332445554 222333322 211 11344567788999
Q ss_pred chhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCHHHH-HHHHHHHHHHHHHHC
Q psy8868 233 DESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPK-GILGLNVKTF-KSYLRFIANCRMKQI 310 (355)
Q Consensus 233 DE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~-~i~Gl~~~~~-~~yv~y~an~~L~~l 310 (355)
||..|..||-.-++.-.. ..++++.+.-++...+-.+.++..-.+ .++||.++.+ .+|+- .-...|.++
T Consensus 157 DEY~HLNfGe~WLk~~f~--------~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~MekealvedFmi-~YgEAL~~I 227 (244)
T 2oc5_A 157 DEYTHLNYGEAWLKANLE--------SCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLI-AYQESLTEI 227 (244)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHhhcchHHHHHHHHHH--------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHc
Confidence 999999999875544432 344555554455544444444443333 3789988665 55554 445678888
Q ss_pred CCCC
Q psy8868 311 GIKQ 314 (355)
Q Consensus 311 G~~~ 314 (355)
|+..
T Consensus 228 GF~t 231 (244)
T 2oc5_A 228 GFNT 231 (244)
T ss_dssp TCCH
T ss_pred CCcH
Confidence 8863
No 24
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=97.40 E-value=0.0016 Score=59.70 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=97.4
Q ss_pred HHHHhhcCCCCCcc-ccccc-------chhhhcC-CCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCC-hHHHH
Q psy8868 48 RYLSSCANHWMPQE-INMQR-------DIELWKN-PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHIT-APECR 117 (355)
Q Consensus 48 ly~k~~~~fW~p~E-i~l~~-------D~~dw~~-~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~-~~E~~ 117 (355)
.+.+ ....|.|++ |+-++ +.++|.. ..+||+..+.++...+--=..+.+.+. .+...+. ++...
T Consensus 24 ~~l~-~~~~W~p~d~lPw~~~~~F~~~~~~~~~~~~~~L~d~~~~~l~~~~itEd~LP~Y~~-----~L~~~~~~d~~w~ 97 (275)
T 1za0_A 24 RHLD-TEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHR-----ELVEHFILEDWWG 97 (275)
T ss_dssp HHHH-TCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC--------------------CHHH
T ss_pred HHhh-hhccCChhhcCCCcccccchhcccccccHhhccCCHHHHHHHHHHHHHhhcchHHHH-----HHHHhcCCCchHH
Confidence 4455 446799999 65431 3344531 127998865555443322112222222 1222222 45788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHH
Q psy8868 118 QYLLRQAFEEAIHTHAYQYIVESLG-LDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196 (355)
Q Consensus 118 ~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~ 196 (355)
.+...+.++|+.|..+-+.++-.-+ .++.++ +. .+...+.+-++ .+ . .+.+..++ |.
T Consensus 98 ~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~l----E~-----~~~~~i~~g~~--------~~-~---~~p~~~~v-y~ 155 (275)
T 1za0_A 98 RWLGRWTAEEHLHAIALREYLVVTREVDPVAN----ED-----VRVQHVMKGYR--------AE-K---YTQVETLV-YM 155 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTT----TC-----TTC-------------------C---CCHHHHHH-HH
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHhCCCCHHHH----HH-----HHHHHhhcCCC--------CC-C---CCHHHHHH-HH
Confidence 8999999999999999999987433 243321 10 01111111111 11 1 11344444 46
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8868 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254 (355)
Q Consensus 197 ~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~ 254 (355)
++-|..-+. .--.+++.--=|-++++...|++||.+|..|...+++.++...|+
T Consensus 156 ~fqE~aT~v----~y~n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd 209 (275)
T 1za0_A 156 AFYERCGAV----FCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRD 209 (275)
T ss_dssp HHHHHHHHH----HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHH----HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 777875542 222444443368899999999999999999999999999987773
No 25
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=97.30 E-value=0.015 Score=58.03 Aligned_cols=217 Identities=15% Similarity=0.130 Sum_probs=134.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CHHHHH
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL------DELEIF 149 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~------~~~e~f 149 (355)
.+++.-++.++..++.++.++-....+.. .+.+....+..+....+|++.|-.|+..-+++...+.. +...
T Consensus 88 ~~d~~W~~~Lk~~l~al~~~EYgA~~~~a-~~~r~~~g~~~~na~~fqa~DeLRhAQ~~~~~~~~l~~~~~Gf~d~a~-- 164 (511)
T 3u52_A 88 ISDARYVNALKLFISGISPLEHAAFQGYS-KVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPH-- 164 (511)
T ss_dssp SSCGGGHHHHHHHHHHTHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHH--
T ss_pred cCCHHHHHHHHHHhccccHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhhh--
Confidence 67888888999999999988855544343 57788999999999999999999999988877665532 1111
Q ss_pred HHHhhCHHH---HHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHH
Q psy8868 150 NAYHEIKSI---RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSEL 226 (355)
Q Consensus 150 ~~~~~~p~l---~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~ 226 (355)
..+|.- +.| . +.++... ...++.+|+.++++|+++----|.-+..++..+==..+..+
T Consensus 165 ---~~d~~W~~~~~R-~----~vEd~~t-----------~Dw~E~~vA~nlv~E~l~tnLl~~~~~~~Aa~nGD~~t~t~ 225 (511)
T 3u52_A 165 ---MHDRVWYLSVPK-S----FFDDARS-----------AGPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTF 225 (511)
T ss_dssp ---HHTTCGGGHHHH-H----HHHHHHH-----------SCHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---hcCccccchhhH-H----HHhhccc-----------cCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHCCCHhHHHH
Confidence 112221 222 1 2222110 01566777777777876543333333334433222456667
Q ss_pred HHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHH--HH-HHhhcCCCCCCCCHHHHHHHHHH--
Q psy8868 227 YQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY--YY-AEDTMPKGILGLNVKTFKSYLRF-- 301 (355)
Q Consensus 227 i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~--~~-~~~~~~~~i~Gl~~~~~~~yv~y-- 301 (355)
+.-+..||++|...+..+++.++.+.|. ..+-++.++..-+..+...=. .. .+|..|...... ++..+.|++-
T Consensus 226 ~~s~qsDesRh~~w~~alvk~~l~~dp~-Nr~llq~wl~~w~wra~~Al~~lg~~~dY~~p~r~~s~-~e~~~~~~e~~~ 303 (511)
T 3u52_A 226 GFSAQSDEARHMTLGLEVIKFILEQHED-NVPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSW-SEAWEVYYEQNG 303 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCH-HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccH-HHHHHHHHHHHH
Confidence 8889999999999999999988876553 223355666665555544431 11 233344222222 4555555433
Q ss_pred -HHHHHHHHCCCCCCC
Q psy8868 302 -IANCRMKQIGIKQIF 316 (355)
Q Consensus 302 -~an~~L~~lG~~~~f 316 (355)
..-++|..+|++.+-
T Consensus 304 ~~~~~~L~~~Gl~~P~ 319 (511)
T 3u52_A 304 GALFKDLERYGIRPPK 319 (511)
T ss_dssp HHHHHHHGGGTCCCCT
T ss_pred HHHHHHHHHhCCCCCh
Confidence 234579999998653
No 26
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B
Probab=97.26 E-value=0.019 Score=55.34 Aligned_cols=227 Identities=9% Similarity=-0.060 Sum_probs=138.6
Q ss_pred hhhcCCCCCCHHHH-HHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC
Q psy8868 69 ELWKNPIGLTEEER-RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG---LD 144 (355)
Q Consensus 69 ~dw~~~~~Ls~~Er-~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~---~~ 144 (355)
..+. .|++.-+ +.++..++.+..++--...+.. .+.+..+.+.++.+..+|++.|-.|+..-+++...++ .+
T Consensus 134 ~~~~---~ld~~w~~~~l~~~l~p~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~g 209 (395)
T 1mhy_B 134 GSIR---TIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPG 209 (395)
T ss_dssp TGGG---GSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred Cccc---cCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455 7999999 9999999999988855544443 5778999999999999999999999999998865552 11
Q ss_pred H----HHHHHHHhhCHHHHHHHHHHHHHHHHh-hhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-c
Q psy8868 145 E----LEIFNAYHEIKSIRDKDEFLIPFIDVL-TDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQI-LALGR-Q 217 (355)
Q Consensus 145 ~----~e~f~~~~~~p~l~~k~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~-~~l~~-~ 217 (355)
. +.--..+.++|.-+- +.+++++. .. ...+++.+++.++++|+++----|.-+ -.++. +
T Consensus 210 ~~~~~~~~k~~W~~dp~Wq~----~R~~~E~~~l~----------~~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~~Aa~n 275 (395)
T 1mhy_B 210 FDASTDVPKKIWTTDPIYSG----ARATVQEIWQG----------VQDWNEILWAGHAVYDATFGQFARREFFQRLATVY 275 (395)
T ss_dssp CCCCSHHHHHHHHHCGGGHH----HHHHHHHHHHS----------CCCHHHHHHHHHHTHHHHHHHHHHTTTHHHHHTTT
T ss_pred cchhhHHHHHHHhhCcchHH----HHHHHHhhhhh----------cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 1 111233455554321 12222322 10 012567777778888998765444443 34444 3
Q ss_pred CCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc---cccHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CCCCC-
Q psy8868 218 NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN---LWTTEFCKEIEQLFLKAIELEYYYAEDTMPK-G-ILGLN- 291 (355)
Q Consensus 218 g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~---~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~-~-i~Gl~- 291 (355)
|-+ -+..++.-+.-||++|...+..+++.+....|+ ...+-++.|+..-+..+...=..+. -+++. + +-|.+
T Consensus 276 GD~-~tptl~~s~q~D~~Rh~~~~~alvk~lle~d~~~~~~N~~llq~Wid~W~~ra~~Al~~l~-p~~~~~~~~~~~~k 353 (395)
T 1mhy_B 276 GDT-LTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLASSVAALKDFV-GLYAKVEKVAGATD 353 (395)
T ss_dssp TCS-SHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHG-GGGGGSCCCTTTTS
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhh-HHHHhccccccccc
Confidence 422 333445558889999999999999988833321 1222345666666666666544442 22221 1 11332
Q ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCC
Q psy8868 292 ----VKTFKSYLRFIANCRMKQIGIKQI 315 (355)
Q Consensus 292 ----~~~~~~yv~y~an~~L~~lG~~~~ 315 (355)
.+.++....--...+|..+|++.+
T Consensus 354 ~~~~~~a~~~v~~~~~~~~L~~~GL~~P 381 (395)
T 1mhy_B 354 SAGVSEALQRVFGDWKIDYADKIGFRVD 381 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 234444222114489999999854
No 27
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B
Probab=97.24 E-value=0.021 Score=53.74 Aligned_cols=186 Identities=10% Similarity=-0.045 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCC--H-HHHH
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA---YQYIVESLGLD--E-LEIF 149 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~s---Ys~il~~l~~~--~-~e~f 149 (355)
.|++.-++.++..++-+..++--...+ ...+.+..+.+.++.+..+|+++|-.|+.. +++-+..-..+ . +.--
T Consensus 109 ~ld~~w~~~l~~~l~pl~~~e~~a~m~-~a~~~r~~~~~~i~na~~fqa~DelRhaQ~~q~~~~~l~~~~~~~~~~~~~k 187 (327)
T 3ge3_B 109 MVREGWEHTMARCYSPLRYLFHCLQMS-SAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHER 187 (327)
T ss_dssp GSCTTHHHHHHHHTTTHHHHHHHHHHH-HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSHH
T ss_pred cCCHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCchhHHH
Confidence 678888888888888777776443322 234778899999999999999999999555 66655433322 1 1112
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCccchHHHHH
Q psy8868 150 NAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA-LGRQNKMIGSSELYQ 228 (355)
Q Consensus 150 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~-l~~~g~l~g~~~~i~ 228 (355)
..+.++|.-+- +.+++++... + ..+.+.+++-++++|+++----|.-+-. .+.+| =..+..++.
T Consensus 188 ~~W~~dp~Wq~----~R~~~Ed~~~------~----~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~Aa~nG-D~~t~~l~~ 252 (327)
T 3ge3_B 188 ELWEKEPGWQG----LRELMEKQLT------A----FDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENN-DTLLPLLID 252 (327)
T ss_dssp HHHHHCHHHHH----HHHHHHHHTT------C----CSHHHHHHHHHHTHHHHHHHHTHHHHHHHHHHTT-CCHHHHHHH
T ss_pred HHHhhCcchHH----HHHHHHHHHh------c----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCC-ChhhHHHHH
Confidence 34566776552 2334433210 0 1256777777888898764333333222 22344 356788899
Q ss_pred HHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHH
Q psy8868 229 YILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYA 279 (355)
Q Consensus 229 ~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~ 279 (355)
.+..||++|...+..+++.+.++ |+ ..+-++.|+..-+..+++.=..+.
T Consensus 253 s~qsD~~Rh~~~~~alvk~ll~~-~~-N~~llq~Wi~~W~~ra~~A~~~l~ 301 (327)
T 3ge3_B 253 SQLKDAERHSRWSKALVKHALEN-PD-NHAVIEGWIEKWRPLADRAAEAYL 301 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-hH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 42 233356777777777776655555
No 28
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=97.18 E-value=0.014 Score=56.14 Aligned_cols=222 Identities=11% Similarity=-0.031 Sum_probs=134.7
Q ss_pred CCCHHHH-HHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C-H-HH
Q psy8868 76 GLTEEER-RLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL-----D-E-LE 147 (355)
Q Consensus 76 ~Ls~~Er-~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~-----~-~-~e 147 (355)
.|++.-+ +.++..++.+..++-....+.. .+.+..+.+.++.+..+|++.|-.|+..-++.+..++. + . +.
T Consensus 130 ~ld~~w~~~~l~~~l~~~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~gf~~~~~~ 208 (384)
T 1mty_B 130 AMNPTWRDEFINRYWGAFLFNEYGLFNAHS-QGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAV 208 (384)
T ss_dssp GSCHHHHHTTTTTHHHHHHHHHHHHHHTTH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHH
T ss_pred cCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHH
Confidence 7999999 9999999999998855555443 57789999999999999999999999998888655521 1 1 11
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh-cCCccchHH
Q psy8868 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQ-ILALGR-QNKMIGSSE 225 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~-~~~l~~-~g~l~g~~~ 225 (355)
--..+.++|..+---+.+.+.. .. ...+.+.+++-++++|+++----|.- +-.++. +|-+ -+..
T Consensus 209 ~k~~W~~dp~wq~~R~~vE~~~---l~----------~~Dw~E~~va~nlv~epl~~~L~~~~~~~~~Aa~nGD~-~tp~ 274 (384)
T 1mty_B 209 PKAEWTNGEVYKSARLAVEGLW---QE----------VFDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGDN-LTPF 274 (384)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHH---HT----------CCCHHHHHHHHHHTHHHHHHHHHHHTTHHHHGGGGTCC-HHHH
T ss_pred HHHHHhhCchhHHHHHHHHHHH---hh----------ccCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCch-hHHH
Confidence 1233455554333222222110 10 01256667777777898765422211 234443 4433 3344
Q ss_pred HHHHHHhchhhHHhHHHHHHHHHHhhCCc---cccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCC-H----HHHH
Q psy8868 226 LYQYILRDESMHCNFGIDLINTIKMENPN---LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGIL-GLN-V----KTFK 296 (355)
Q Consensus 226 ~i~~I~RDE~~H~~~~~~l~~~l~~e~~~---~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~-Gl~-~----~~~~ 296 (355)
++.-+.-||++|...+..+++.+....|+ ...+-++.|+..-+..+...=..+. -++.. .. |.+ . +.+.
T Consensus 275 l~~s~q~D~~Rh~~w~~alvk~lle~d~~~~~~N~~llq~Wid~W~~ra~~A~~~l~-p~~~~-~~~~~~~~~~~~~al~ 352 (384)
T 1mty_B 275 FINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFM-GLFAK-LPAGTTDKEEITASLY 352 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHG-GGGGG-SCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHhhh-HHHHh-cccccccchhHHHHHH
Confidence 55558899999999999999988844442 2233356677666666666544442 22222 12 222 2 2233
Q ss_pred HHHHHH-HHHHHHHCCCCCC
Q psy8868 297 SYLRFI-ANCRMKQIGIKQI 315 (355)
Q Consensus 297 ~yv~y~-an~~L~~lG~~~~ 315 (355)
. +.-. ...+|..+|++.+
T Consensus 353 ~-v~~~~~~~~l~k~Gl~~p 371 (384)
T 1mty_B 353 R-VVDDWIEDYASRIDFKAD 371 (384)
T ss_dssp H-HHHHHHHHTGGGGTCCCC
T ss_pred H-HHHHHHHHHHHHcCCCCC
Confidence 3 4434 4557888998743
No 29
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Probab=96.68 E-value=0.066 Score=50.58 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=100.0
Q ss_pred cCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHH-----HHhhhHhhhchHHhHhhc--CC--hHHHHHHHHHHH
Q psy8868 54 ANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFF-----STADSLAANNIVLGTYRH--IT--APECRQYLLRQA 124 (355)
Q Consensus 54 ~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~-----~~~Ds~v~~~l~~~l~~~--~~--~~E~~~~~~~q~ 124 (355)
..+|.|.+.-.--+-.-|. .||+++|..+.+--..- ...+.++.+-+...++.. -+ ...++....+.+
T Consensus 57 ~~~~~p~ellpl~gtp~w~---~l~~eqR~~L~~~e~~~~~s~~I~~E~~lv~~~~r~i~~~~~p~~~~~~~~ya~ltei 133 (336)
T 3chh_A 57 LVPDYPLEIVPFAEHPLFL---AAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAI 133 (336)
T ss_dssp TSCSSCGGGCTTTTCHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHH
T ss_pred CCCCCChhhccccCCHhHH---hCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 5678877776667788899 99999987766533222 224555554444444443 23 355655546888
Q ss_pred HHHHHHHHHHHHHHH----HhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcch-HHHHHHHHHHHHHH
Q psy8868 125 FEEAIHTHAYQYIVE----SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND-QKLLKSLIVFACIM 199 (355)
Q Consensus 125 ~~E~iH~~sYs~il~----~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~lv~f~~~l 199 (355)
.+|+.|+..+.+.++ ..+..+. + . ...+.+-+++.... . ..+.. +..+..+ ++.++.
T Consensus 134 ~DE~~Hs~Mf~~~~~~~~~~~G~~~~--~-~-~p~~~l~r~l~~~l---a----------~~~~~~~~~l~~~-a~~lva 195 (336)
T 3chh_A 134 VDESFHTYMHMLAIDRTRELRKISER--P-P-QPELVTYRRLRRVL---A----------DMPEQWERDIAVL-VWGAVA 195 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC--C-C-CCCCHHHHHHHHHH---T----------TCCCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC--C-C-CChHHHHHHHHHHH---c----------cCchhhhhHHHHH-HHHHHH
Confidence 899999999999998 4554410 0 0 01111211111111 1 01111 2222222 224556
Q ss_pred HHHHHHHHHHHHHHHhhc-CCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8868 200 EGLFFYVGFVQILALGRQ-NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN 254 (355)
Q Consensus 200 Egi~f~sgF~~~~~l~~~-g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~ 254 (355)
|-++=. +.-.+.+. ++-|-+..+.+.=.+||++|+.|+..+++.+....+.
T Consensus 196 Eeiid~----~~r~~~~D~~vQP~vR~v~riHv~DEaRH~~fare~~~~~~~~l~~ 247 (336)
T 3chh_A 196 ETCINA----LLALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNE 247 (336)
T ss_dssp HHSBCH----HHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHH----HHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 665421 12233333 4444444555666899999999999999999877654
No 30
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A
Probab=96.53 E-value=0.013 Score=56.51 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=99.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHH
Q psy8868 69 ELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV-ESLGLDELE 147 (355)
Q Consensus 69 ~dw~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il-~~l~~~~~e 147 (355)
.-|. .+|++-|..+.++++.++-.+-.-.. .-..+....|+...+.-+.....+|.-|...+.+++ ++++.+..+
T Consensus 96 ~~Wq---emP~eYR~~LiRlI~~haDSEiagve-~e~~wi~~APSL~~k~~L~aiVqDE~gHg~~mlyllae~fG~Dr~e 171 (481)
T 3pf7_A 96 DVWQ---EVPGEYRSTLRRIIVTQGDTEPASVE-QQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGRE 171 (481)
T ss_dssp BCBS---SCCGGGHHHHHHHHHHHHHHHHHHHH-HHTTGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cchh---hCCHHHHHHHHHHHHHHhhhHHhhch-hhhhHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHHH
Confidence 3499 89999999999999999655522221 112345567777777677677899999999888888 888877654
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHhhhhhh-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHH
Q psy8868 148 IFNAYHEIKSIRDKDEFLIPFIDVLTDLKF-KTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSEL 226 (355)
Q Consensus 148 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~ 226 (355)
..+. +.+|. ..+...+.+ ..-..+ ..+++. .++|..++.+.- -.-+..|.+.. .--++..
T Consensus 172 ~ad~------LL~R~------sGd~~~pk~L~~FNyP-t~~WaD-~~~f~~LvDrAg----i~qL~~L~~sS-Y~PlARa 232 (481)
T 3pf7_A 172 EGEA------LLERR------SGDEDNPRILTAFNEK-TPDWLS-FFMFTFITDRDG----KFQLASLAESA-FDPLART 232 (481)
T ss_dssp HHHH------HHHCC------TTCSSSCCSSGGGSSC-CCSHHH-HHHHHHHTHHHH----HHHHHHHTTCS-BHHHHHH
T ss_pred HHHH------HHhhc------cCCcccccccccccCC-CCCHHH-HHHHHHhhhHHH----HHHHHHHHhCC-cHHHHHH
Confidence 3211 11110 000000000 000011 122443 344577777743 33344665554 5558889
Q ss_pred HHHHHhchhhHHhHHHHHHHHHHh
Q psy8868 227 YQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 227 i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
++.|+..|+.|...|-..+.++.+
T Consensus 233 mr~I~kEEafH~~~Ge~gl~rli~ 256 (481)
T 3pf7_A 233 CKFMLTEEAHHLFVGESGIARVIQ 256 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887765
No 31
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=94.91 E-value=1.4 Score=39.62 Aligned_cols=195 Identities=9% Similarity=0.086 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHHhhCHHHHHHH
Q psy8868 85 VKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL-GL-DELEIFNAYHEIKSIRDKD 162 (355)
Q Consensus 85 ~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l-~~-~~~e~f~~~~~~p~l~~k~ 162 (355)
+.+.+..++-.+-+.+.-+.. -....|..|.+..++..+-+|.=|++.+-.+..++ +. +++++ . +...+.
T Consensus 5 L~~~l~~laD~elil~~r~~e-W~~~AP~LEediAlanialDelGhar~ly~~a~~l~G~~~~D~L-a-~~R~~~----- 76 (249)
T 1otk_A 5 LTAYTLRLGDNCLVLSQRLGE-WCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTL-A-FTRDER----- 76 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHH-H-HSCCGG-----
T ss_pred HHHHHHHHhCHHHHhccccch-HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHH-H-HhcCHH-----
Confidence 444555554444444444443 34678888999999999999999999999999999 87 46653 1 222111
Q ss_pred HHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccchHHHHHHHHhchhhHHhH
Q psy8868 163 EFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQIL--ALGRQNKMIGSSELYQYILRDESMHCNF 240 (355)
Q Consensus 163 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~~ 240 (355)
++-+-.+-+ .| ..+|...++- + ++|+++.... .|. +.--+-++.+...|++.|+.|..+
T Consensus 77 ~frn~~l~e----------~P-~gdwa~ti~r-~------~l~d~~~~~~~~~L~-~ss~~plA~ia~K~~kEe~yH~~h 137 (249)
T 1otk_A 77 QFSNLLLVE----------QP-NGNFADTIAR-Q------YFIDAWHVALFTRLM-ESRDPQLAAISAKAIKEARYHLRF 137 (249)
T ss_dssp GCCCCGGGG----------SC-CCSHHHHHHH-H------HHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHc----------CC-CCCHHHHHHH-H------HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 11 1124433332 2 4566666554 343 445789999999999999999999
Q ss_pred HHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------CCCCCHHHHHHHHHHHHHHHHHHCC
Q psy8868 241 GIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKG---------ILGLNVKTFKSYLRFIANCRMKQIG 311 (355)
Q Consensus 241 ~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~---------i~Gl~~~~~~~yv~y~an~~L~~lG 311 (355)
+...+.+|..-- ++-++.+++|++.=--+...+|..+ .++.+.+++.+=-.-.....|..+|
T Consensus 138 ~~~w~~rL~~gT---------~Es~~r~Q~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~ag 208 (249)
T 1otk_A 138 SRGWLERLGNGT---------DVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEAT 208 (249)
T ss_dssp HHHHHHHHHTSC---------HHHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999988887422 2334555566654323333344310 1234556665555556677788888
Q ss_pred CCCC
Q psy8868 312 IKQI 315 (355)
Q Consensus 312 ~~~~ 315 (355)
++-+
T Consensus 209 L~~P 212 (249)
T 1otk_A 209 LNVP 212 (249)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8644
No 32
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=93.35 E-value=0.62 Score=35.40 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~ 144 (355)
+||+..|+...-+-+...-++ +.++-..++...++|+++.++.-.+-+|..|+-.+-.+|..+.+.
T Consensus 12 ~ls~~~~d~~rai~aL~~Ele---AI~~Y~q~A~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~dp~ 77 (95)
T 1zpy_A 12 ELSDETRDMHRAIISLREELE---AVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPA 77 (95)
T ss_dssp GSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 799999988877776554444 444556788999999999999999999999999999999987433
No 33
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=92.86 E-value=4.4 Score=35.20 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=96.9
Q ss_pred HhhcCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q psy8868 107 TYRHITAPECRQYLLRQAFEE----AIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNT 182 (355)
Q Consensus 107 l~~~~~~~E~~~~~~~q~~~E----~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~ 182 (355)
++...++++.+..+...+..| ..|.+.|...++.+|.+++++ ......|..+.-.+++......
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~e~~~~~~h~~l~~~~~~~~Gi~~~~~-~~~~~~p~t~~y~~~~~~~~~~----------- 128 (231)
T 1rcw_A 61 IHSRCDDLEARKLLLDNLMDEENGYPNHIDLWKQFVFALGVTPEEL-EAHEPSEAAKAKVATFMRWCTG----------- 128 (231)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHTTCCHHHH-HHCCCCHHHHHHHHHHHHHHTS-----------
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHcCCCHHHH-hcCCCCHHHHHHHHHHHHHHcC-----------
Confidence 345678889888888888887 689999999999999998764 3344557776666666543321
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh-cCCc--cchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcccc
Q psy8868 183 KNDQKLLKSLIVFACIMEGLFFYVGFVQ--ILALGR-QNKM--IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257 (355)
Q Consensus 183 ~~~~~~~~~lv~f~~~lEgi~f~sgF~~--~~~l~~-~g~l--~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~ 257 (355)
. ++...+.+ .++.|++.- ..+. .-.+.. .+.. -+..---.++.-| ..|+..+..++..+..+
T Consensus 129 ~---~~~~~laa-l~~~E~~~~--~~~~~~~~~~~~~~~wi~~~~~~~f~~h~~~d-~~h~~~~~~~l~~~~~~------ 195 (231)
T 1rcw_A 129 D---SLAAGVAA-LYSYESQIP--RIAREKIRGLTEYFGFSNPEDYAYFTEHEEAD-VRHAREEKALIEMLLKD------ 195 (231)
T ss_dssp S---CHHHHHHH-HHHHHTTHH--HHHHHHHHHHHHHSCCCSGGGGHHHHHHHHHH-HHHHHHHHHHHHHHCSS------
T ss_pred C---CHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHCCCCChhhhHHHHHHHHHh-HHHHHHHHHHHHHHHHH------
Confidence 1 14444544 244566542 1111 011111 2322 2333344555566 46999888888877641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8868 258 TEFCKEIEQLFLKAIELEYYYAEDTMP 284 (355)
Q Consensus 258 ~~~~~~i~~l~~~ave~E~~~~~~~~~ 284 (355)
-++.+.+.+..+.+.|..|-+.++.
T Consensus 196 --~~~~~~~~~~~~~~le~~fwd~~~~ 220 (231)
T 1rcw_A 196 --DADKVLEASQEVTQSLYGFLDSFLD 220 (231)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1467999999999999999998875
No 34
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=88.14 E-value=4 Score=30.86 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy8868 76 GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGL 143 (355)
Q Consensus 76 ~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~ 143 (355)
+||+..|+...-+.+.-.-+| +-++-...+...++|+++..+.-.+-+|-.|.-.+..+|+.+-+
T Consensus 12 ~Ls~e~~d~~Rai~sl~~Ele---AI~~Y~q~a~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~Dp 76 (95)
T 3k6c_A 12 ELSDETRDMHRAIISLREELE---AVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDP 76 (95)
T ss_dssp GSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 799998887777665443344 44455567889999999999999999999999999999987643
No 35
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=83.96 E-value=24 Score=31.73 Aligned_cols=149 Identities=12% Similarity=0.124 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHH
Q psy8868 114 PECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193 (355)
Q Consensus 114 ~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv 193 (355)
.+++.++...+..|..|.+.+..+.+.+|.+++++ ......|.-..-..++...... .++...++
T Consensus 89 ~~~~~~l~~~i~vE~~H~~~~~~f~~~~Gis~eel-~~~~~~P~~~aYt~~ml~~a~~--------------g~l~e~lA 153 (262)
T 3oql_A 89 DMARRWLMRNIRVELNHADYWVNWCAAHDVTLEDL-HDQRVAPELHALSHWCWQTSSS--------------DSLAVAMA 153 (262)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHTTTCCHHHH-HHTCSCGGGGHHHHHHHHHHHH--------------SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCHHHH-hcCCCChHHHHHHHHHHHHHcc--------------CCHHHHHH
Confidence 46788887777788889999999999999998875 4455567766666666643221 01333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC----ccch------HHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHH
Q psy8868 194 VFACIMEGLFFYVGFVQILALGRQNK----MIGS------SELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKE 263 (355)
Q Consensus 194 ~f~~~lEgi~f~sgF~~~~~l~~~g~----l~g~------~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~ 263 (355)
+....+|+..---+ .-...|+ .++. .+-++.=..=...|..-...++.++..+.| +++-++.
T Consensus 154 Al~ya~e~~ig~~s-----~~~~~g~~~~~~~~~~~~~~~~~w~~~h~~~D~~H~~e~~~li~~l~~~~~---~~~e~~~ 225 (262)
T 3oql_A 154 ATNYAIEGATGEWS-----AVVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKP---SLQLQAE 225 (262)
T ss_dssp HTTTHHHHHHHHHH-----HHHHSSSHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCSSC---CHHHHHH
T ss_pred HHHHHHHHHhhhHH-----HHhhhhHHHhcCCCcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCC---CHHHHHH
Confidence 31112233322100 0001121 0111 122222223335788888999999986554 2456789
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q psy8868 264 IEQLFLKAIELEYYYAEDTMPK 285 (355)
Q Consensus 264 i~~l~~~ave~E~~~~~~~~~~ 285 (355)
+.+.+..+.+.|..|.+..+..
T Consensus 226 ~~~a~~~S~~~~~~fld~~y~~ 247 (262)
T 3oql_A 226 LRQAVTKSYDYMYLFLERCIQL 247 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 36
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=83.75 E-value=28 Score=32.32 Aligned_cols=154 Identities=14% Similarity=0.039 Sum_probs=92.2
Q ss_pred hHhhcCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhc
Q psy8868 106 GTYRHITAPECRQYLLRQAFEE-------AIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFK 178 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E-------~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~ 178 (355)
.+....++++.+..+...+.+| ..|.+.|..+++.+|.+++ +......|..+.-..........
T Consensus 162 ~~~a~~~~~~~r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~lGld~~--~~~~~~~p~~~~~v~~~~~~~~~------- 232 (332)
T 3bjd_A 162 DLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEAD--FQAVSTMPEEIAYLNNRARAFRH------- 232 (332)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCC--TTCCCCCHHHHHHHHHHHHHHHC-------
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHcCCChh--HhcccCCHHHHHHHHHHHHHHhc-------
Confidence 3556778899888888877776 3679999999999998764 23333456555444433332221
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCcc-chHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc
Q psy8868 179 TGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQ-ILALGRQNKMI-GSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256 (355)
Q Consensus 179 ~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~-~~~l~~~g~l~-g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~ 256 (355)
.+ +...+.+ ..+.|+... .+|.- .-.+.+.|.-+ +..---.+|.-|. .|...+.. .++...|.
T Consensus 233 ----~~---~~~alaa-l~~~E~~~p-~~y~~i~~~l~~~g~~~~~~~yf~~HI~lD~-~H~~~~~~---~ll~~~~~-- 297 (332)
T 3bjd_A 233 ----AE---VGWGLAV-FYITELVVP-GNHEKLYRALLQAGLSEDQAEYYKVHISLVP-PRAKREWQ---LIARRIPD-- 297 (332)
T ss_dssp ----SS---THHHHHH-HHHHHHHHH-HHHHHHHHHHHHTTCCTTTTHHHHHHHHHCC----CTTHH---HHHTTTTC--
T ss_pred ----CC---HHHHHHH-HHHHHHhhH-HHHHHHHHHHHHcCCCcccchHHHHHHHHhH-HHHHHHHH---HHHHhCCC--
Confidence 11 2333433 456799754 34443 34666666523 5566678888898 48833222 24444442
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8868 257 TTEFCKEIEQLFLKAIELEYYYAEDTMP 284 (355)
Q Consensus 257 ~~~~~~~i~~l~~~ave~E~~~~~~~~~ 284 (355)
.+.+..+...+..+++.+.+|.+.++.
T Consensus 298 -~~~q~~~~~a~~~~l~~~~~f~D~l~~ 324 (332)
T 3bjd_A 298 -VQFQNAFLTSLSQHFRVERAYYDAIWE 324 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777777999998887753
No 37
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=83.08 E-value=23 Score=30.89 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=89.9
Q ss_pred hhcCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcch
Q psy8868 108 YRHITAPE--CRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185 (355)
Q Consensus 108 ~~~~~~~E--~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~ 185 (355)
+...++++ .+..+...+..|.-|-..+-+-++.+|.+++++ ......|..+.-.+++...... .++
T Consensus 63 ~~ka~~~~~~~~~~~~~~~~~e~~~e~~~~~~l~~~G~~~~~~-~~~~~~pat~aY~~~l~~~a~~-----------~~~ 130 (239)
T 3dde_A 63 GIMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASIGFDREDV-LSSKPLPATETLIAYLYWISAT-----------GNP 130 (239)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHHH-HTCCCCHHHHHHHHHHHHHHHS-----------SCG
T ss_pred HHhCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHhCCCHHHH-HhCCCChHHHHHHHHHHHHHhC-----------CCH
Confidence 34556665 777777888888777766666688899887764 3444568777777776644321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCccc--hHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHH
Q psy8868 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQ-NKMIG--SSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK 262 (355)
Q Consensus 186 ~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~-g~l~g--~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~ 262 (355)
...+.+ ..++||+. -+|=...-.+.+. | +|. +.-..-...-|+ -|......+++.+. .+++-++
T Consensus 131 ---~~~la~-~~~~E~~y-~~~~~~~~~l~~~~~-l~~~~~~f~~~h~~~d~-~h~~~~~~~ld~~~------~~~~~~~ 197 (239)
T 3dde_A 131 ---VQRLGY-SYWAENVY-GYIDPVLKAIQSTLD-LTPQSMKFFIAHSKIDA-KHAEEVNEMLHEVC------KTQEDVD 197 (239)
T ss_dssp ---GGGHHH-HHHHHTCH-HHHHHHHHHHHHHTT-CCGGGGHHHHHHHHHHH-HHHHHHHHHHHHHC------CSHHHHH
T ss_pred ---HHHHHH-HHHHHHhh-HHHHHHHHHHHHHhC-cCHHHHHHHHHHHhcch-hHHHHHHHHHHHHc------CCHHHHH
Confidence 112333 55789985 2222222334333 4 343 233333333454 58776666665553 2445678
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy8868 263 EIEQLFLKAIELEYYYAEDTM 283 (355)
Q Consensus 263 ~i~~l~~~ave~E~~~~~~~~ 283 (355)
.|.+.++.++.+...+.+.+.
T Consensus 198 ~ii~~a~~~~~l~~~~f~~l~ 218 (239)
T 3dde_A 198 SVVAVMENSLVLTARILDDVW 218 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988887776654
No 38
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Probab=78.87 E-value=29 Score=29.34 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=71.3
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcc
Q psy8868 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDE-LEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKN 184 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~-~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~ 184 (355)
..+..-.-+++...+...+..|..|++-|..++..+..+. ..+-.... | +. ....-...+.+ +
T Consensus 49 ~~A~~EG~~~IA~~F~~~A~~E~~HA~r~~kll~~l~~~~~~~~~~~~~--~-v~-~~~~p~~~~~~------------T 112 (179)
T 3qhb_A 49 EIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKR--L-VS-TIESQIDAVAS------------D 112 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCHHHHHHHH--H-HH-HHHHTHHHHHH------------S
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc--c-cc-cccccccccCc------------H
Confidence 3455666789999999999999999999999887664331 10000000 0 00 00000000000 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHH
Q psy8868 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249 (355)
Q Consensus 185 ~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~ 249 (355)
.+++-+.|-. ++-.|.--.-..+--+.-.++.-=++..+..++.|.++|..|......++..+.
T Consensus 113 ~eN~~~~L~~-A~~GE~~E~~~mYp~fA~~A~eEG~~eiA~~F~~ia~~Ek~H~~ry~~ll~~l~ 176 (179)
T 3qhb_A 113 SRGLRRALET-ALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLL 176 (179)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221122222 222333222222233334444444899999999999999999999888887765
No 39
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=77.03 E-value=10 Score=34.51 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=36.4
Q ss_pred HhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Q psy8868 105 LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDELE 147 (355)
Q Consensus 105 ~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e 147 (355)
.+++....+|-++..++..+.+|++|-.+|.++++.+. .+++.
T Consensus 167 ~n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd~ 210 (275)
T 1za0_A 167 RNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDE 210 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 34667899999999999999999999999999998864 34543
No 40
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=61.07 E-value=88 Score=27.65 Aligned_cols=143 Identities=10% Similarity=-0.031 Sum_probs=80.7
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHH
Q psy8868 108 YRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK 187 (355)
Q Consensus 108 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~ 187 (355)
+...++ +....+..++..... ..+..+++.++.+.+++ ....|.-+.-.+++...... ..
T Consensus 106 ~aka~~-~~~~~~~~~~~~~~~--~lh~~~~~~~Gi~~~~~---~~~~pat~aYt~~ll~~a~~--------------g~ 165 (258)
T 2a2m_A 106 ATCAQD-ETLREFFKAKAKSYD--EYNETYHQTWHLREASG---LIPGTDIKDYADYEAYVAGS--------------LA 165 (258)
T ss_dssp HHTCSS-HHHHHHHHHHHHHHH--HHHHHHHHTSCBCCGGG---BCCCHHHHHHHHHHHHHHHH--------------SC
T ss_pred HHhCCc-HHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHc---cCCCHHHHHHHHHHHHHHhc--------------CC
Confidence 344555 444444444433222 55566778888765543 44557777777777653321 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHH---hchhhHHhHHHHHHHHHHhhCCccccHHHHHHH
Q psy8868 188 LLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYIL---RDESMHCNFGIDLINTIKMENPNLWTTEFCKEI 264 (355)
Q Consensus 188 ~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~---RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i 264 (355)
+...+++. ..+|-++...|- .+.+... +. ..--+||. .|| -++.....++..+..+.+ .+++
T Consensus 166 ~~~~laAl-~pC~~~Y~eig~----~l~~~~~-~~-~~Y~~WI~~~Y~~~-~~v~~~~~lld~~~~~~~-------~~~l 230 (258)
T 2a2m_A 166 SPYMCVVM-LPCEYLWPWIAN----FLDGYTP-TN-SLYRFWIEWNGGTP-NGAYQMGNMLEQYRDKID-------EDKA 230 (258)
T ss_dssp THHHHHHH-HHHHHHHHHHHH----HHGGGSC-TT-STTHHHHHHHCSCC-HHHHHHHHHHHTTGGGSC-------HHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHH----HHHhccC-CC-chHHHHHHhccCCH-HHHHHHHHHHHHHHhhcc-------HHHH
Confidence 34455553 334555443332 2232211 22 22345666 777 566666666666543221 5789
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q psy8868 265 EQLFLKAIELEYYYAEDTMPK 285 (355)
Q Consensus 265 ~~l~~~ave~E~~~~~~~~~~ 285 (355)
.+++..+++.|..|-+..+..
T Consensus 231 ~~~F~~a~~lE~~Fwd~a~~~ 251 (258)
T 2a2m_A 231 VEIFNTAMNYELKVFTSSTIL 251 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999887753
No 41
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=58.73 E-value=86 Score=26.75 Aligned_cols=112 Identities=16% Similarity=0.067 Sum_probs=66.7
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchH
Q psy8868 107 TYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186 (355)
Q Consensus 107 l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (355)
.+..-.-+++..++..++..|..|++-|..++..++.++. . .. .|.- . + ....+
T Consensus 53 ~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~--i-~~--~p~~--~-------~------------gst~e 106 (202)
T 1yuz_A 53 AAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE--K-PT--VAAP--S-------A------------YSCDL 106 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC--C-CC--C--C--C-------C------------CCHHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce--e-cc--CCcc--C-------C------------CCHHH
Confidence 3445566899999999999999999999999988754421 1 10 1110 0 0 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHH
Q psy8868 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249 (355)
Q Consensus 187 ~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~ 249 (355)
+ ++..+. .=.-|..-.|..|+ -.++.--...++..+++|.++|..|......++..+.
T Consensus 107 n-L~~a~~-gE~~E~t~my~~~a---~~A~eEgd~~~a~~f~~i~~~E~~H~~~~~~ll~~l~ 164 (202)
T 1yuz_A 107 N-LISGAN-GEIYETSDMYPAFI---RKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDID 164 (202)
T ss_dssp H-HHHHHH-HHHHHHHTHHHHHH---HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred H-HHHHHH-hHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111111 10012222233333 4444444789999999999999999998777776654
No 42
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=57.38 E-value=1e+02 Score=27.24 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=95.0
Q ss_pred HhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcch
Q psy8868 107 TYRHITAPECRQYLLRQAFEEA-IHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185 (355)
Q Consensus 107 l~~~~~~~E~~~~~~~q~~~E~-iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~ 185 (355)
.....++++....+..++.... .....+..+++.++.+++++ ......|..+.-.+++...... .
T Consensus 85 a~aka~~~~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~l-~~~~~~pat~aYt~~l~~~a~~-----------g-- 150 (263)
T 2qcx_A 85 GAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEER-KAFKPSPTAYSFTSHMYRSVLS-----------G-- 150 (263)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH-HSCCCCHHHHHHHHHHHHHHTT-----------T--
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-hhCCCChHHHHHHHHHHHHHhc-----------C--
Confidence 3456677887777766654432 24566666778899887663 3445568777777777653321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--hHHHHHHHHhch-hhHHhHHHHHHHHHHhhCCccccHHHHH
Q psy8868 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIG--SSELYQYILRDE-SMHCNFGIDLINTIKMENPNLWTTEFCK 262 (355)
Q Consensus 186 ~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g--~~~~i~~I~RDE-~~H~~~~~~l~~~l~~e~~~~~~~~~~~ 262 (355)
++...+++. ..+|.++..-|- .+.+... |. ..+=|+.=.-+| .-|+.....++..+.... +++-++
T Consensus 151 -~~~~~laAl-~pC~w~Y~~ig~----~l~~~~~-~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~----s~~~~~ 219 (263)
T 2qcx_A 151 -NFAEILAAL-LPCYWLYYEVGE----KLLHCDP-GHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENS----TEEVRA 219 (263)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHHH----HHTTCCC-CSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTS----CHHHHH
T ss_pred -CHHHHHHHH-HHHHHHHHHHHH----HHHhccC-CCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhC----CHHHHH
Confidence 245555552 445666544332 2333322 33 123333333344 578888888888886543 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q psy8868 263 EIEQLFLKAIELEYYYAEDTMPK 285 (355)
Q Consensus 263 ~i~~l~~~ave~E~~~~~~~~~~ 285 (355)
++.+++..+++.|..|-+..+..
T Consensus 220 ~l~~~F~~a~~lE~~Fwd~a~~~ 242 (263)
T 2qcx_A 220 KMKENFVISSYYEYQFWGMAYRK 242 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999988764
No 43
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=57.21 E-value=31 Score=32.17 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=34.6
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Q psy8868 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDELE 147 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~-~~~~e 147 (355)
.++....+|-++..++..+.+|+.|-.+|.++++.+. .++++
T Consensus 183 r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dpd~ 225 (338)
T 2uw1_A 183 KLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDT 225 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 3455688999999999999999999999999998764 34443
No 44
>3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP}
Probab=57.09 E-value=99 Score=26.98 Aligned_cols=203 Identities=16% Similarity=0.152 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHH
Q psy8868 80 EERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIR 159 (355)
Q Consensus 80 ~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~ 159 (355)
.....+..+|+.++.++...-..+.. =+...|+-..|.-++..+..|.-|-+.-...+...+.|+.+...-+..
T Consensus 11 ~~~~~v~~llg~lAygel~AF~RLa~-da~~AP~L~~r~ala~mAaae~~hf~~L~~~l~~~G~D~~~am~pf~~----- 84 (225)
T 3ez0_A 11 RYNRFVADLFGMMAYGELSAFERFSA-DARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQA----- 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGGHH-----
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-----
Confidence 45567888889888888666555553 346777778899999999999999999999999999887543222210
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHh
Q psy8868 160 DKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCN 239 (355)
Q Consensus 160 ~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~ 239 (355)
.+++ |+..|.| .+|+++++- .++.-|+.- =|+ ---..++-+.+...+.-+.. +.-|..
T Consensus 85 --------~ld~-----fh~~T~P--~dW~E~LvK-aYVgdgla~--DFy---~~ia~~L~~~~r~~v~~vL~-~~~~~~ 142 (225)
T 3ez0_A 85 --------AVDY-----FHSRTRP--ADWYESLMK-AYVIDTVSA--DFY---RAISRYVDAGTRDVIEQIQA-SDETTE 142 (225)
T ss_dssp --------HHHH-----HHHTCCC--SSHHHHHHH-HHHHHHHHH--HHH---HHHTTTSCHHHHHHHHHHSC-CHHHHH
T ss_pred --------HHHH-----HHhcCCC--CChHHHHHH-HHHHhhHHH--HHH---HHHHhhCCHHHHHHHHHHhc-cccchH
Confidence 1111 1112333 347777766 455555542 121 11135666788888888886 556999
Q ss_pred HHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCCCCCC-----HHHHHHHHHHHHHHHHH
Q psy8868 240 FGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAE------DTMPKGILGLN-----VKTFKSYLRFIANCRMK 308 (355)
Q Consensus 240 ~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~~------~~~~~~i~Gl~-----~~~~~~yv~y~an~~L~ 308 (355)
|...-++.-+...|.. ..-+.=|-+.++=|++-.-..-+. .++.. . ++. ...+...+.-...+||.
T Consensus 143 f~v~~vraai~aDp~l-~sRLaLWgRRLvGEAL~qaQ~vla~~~~L~~l~~g-~-dl~~~~~~v~~lf~~l~~~H~~RM~ 219 (225)
T 3ez0_A 143 VLRERLRSALADDPRL-ASRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGG-E-DSAAAKELVSGLIAGLAEKHSKRMT 219 (225)
T ss_dssp HHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchh-hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcC-C-CcchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999888874 222344666666666654333221 11211 1 323 36677778888899999
Q ss_pred HCCCC
Q psy8868 309 QIGIK 313 (355)
Q Consensus 309 ~lG~~ 313 (355)
.||+.
T Consensus 220 ~LGL~ 224 (225)
T 3ez0_A 220 QLGLT 224 (225)
T ss_dssp TTTCC
T ss_pred HcCCC
Confidence 99985
No 45
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=55.05 E-value=41 Score=27.19 Aligned_cols=68 Identities=12% Similarity=0.039 Sum_probs=43.6
Q ss_pred HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc---cHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8868 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW---TTEFCKEIEQLFLKAIELEYYYAEDT 282 (355)
Q Consensus 213 ~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~---~~~~~~~i~~l~~~ave~E~~~~~~~ 282 (355)
++...| ++|++..+.-.+.+|..|..-....+..+-. .|... ....-..+.++++.+++.|...+..+
T Consensus 31 ~~~~~g-~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG-~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~~ 101 (159)
T 4am5_A 31 MLEDWG-YKDLAKKWRAESIEEMAHADKFVERILFLEG-LPNLQTLDPLRIGQTVKEVLESDLAAEREARALY 101 (159)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCSBCCCCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 333334 8999999999999999999865555544432 22210 00111346678888888888776543
No 46
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=54.15 E-value=50 Score=27.26 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc---ccH---HHHHHHHHHHHHHHHHHHHHHHh
Q psy8868 208 FVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL---WTT---EFCKEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 208 F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~---~~~---~~~~~i~~l~~~ave~E~~~~~~ 281 (355)
++.-.+|.+.| +||+++-+..-+.+|.-|..-....++..-. .|.+ ... ..-..+.++++.++++|+.-...
T Consensus 24 l~ma~~f~~~~-l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg-~~~l~~i~~p~~~~~~~~~~e~le~aL~~Ek~v~~~ 101 (168)
T 3e6s_A 24 LSASIWFDQND-WEGMAAYMLAESAEEREHGLGFVDFANKRNI-PIELQAVPAPVSCAEWSSPEDVWQSILELEQANTRS 101 (168)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBCCCCGGGTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccccCCcCCCCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 34446777778 8999999999999999999865554433321 1110 000 01124567788888888866554
Q ss_pred h
Q psy8868 282 T 282 (355)
Q Consensus 282 ~ 282 (355)
+
T Consensus 102 l 102 (168)
T 3e6s_A 102 L 102 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=53.70 E-value=40 Score=28.54 Aligned_cols=81 Identities=7% Similarity=-0.038 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc--ccHH-HH-HHHHHHHHHHHHH
Q psy8868 199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL--WTTE-FC-KEIEQLFLKAIEL 274 (355)
Q Consensus 199 lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~--~~~~-~~-~~i~~l~~~ave~ 274 (355)
.|-...|.-++.-.++.+.| ++|+++-+...+.+|.-|..-....++.+-. .|.+ ..++ .. ..+.++++.++++
T Consensus 21 ~El~As~~Yl~~a~~f~~~~-l~g~a~~f~~~A~EE~~HA~~l~~~i~~rGG-~~~l~~i~~p~~~~~s~~e~le~aL~~ 98 (189)
T 3uno_A 21 NEFTAAQQYVAIAVYFDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDL-RVEIPGVDTVRNQFDRPREALALALDQ 98 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBCCCCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccCCCCCCCccchHHHHHHHHHHHH
Confidence 34333333333345667777 9999999999999999999865554443322 1111 0000 00 2356777777777
Q ss_pred HHHHHHh
Q psy8868 275 EYYYAED 281 (355)
Q Consensus 275 E~~~~~~ 281 (355)
|+.....
T Consensus 99 Ek~v~~~ 105 (189)
T 3uno_A 99 ERTVTDQ 105 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
No 48
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=52.73 E-value=34 Score=31.56 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8868 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 196 ~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
++-+|--.----....|++..++ ......|+-|.++|.+|....+++++.+-.
T Consensus 18 Ai~lE~stIp~YL~a~ySi~~~n--~~~~~~i~~V~~eEMlHl~l~aNll~AiGg 70 (317)
T 3hl1_A 18 AIDLELWTIPYYLTVLYSIKDPT--TVPYRLIQAAVYQEMLHAQLVSNIANAYGY 70 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHBSCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33445433322234446666554 588999999999999999999999988864
No 49
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=50.47 E-value=54 Score=24.64 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHH
Q psy8868 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248 (355)
Q Consensus 187 ~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l 248 (355)
.+.+++.+...=+|.|-+|...+ ..-.-|.+..++.-|+++|-.|.+....+++.+
T Consensus 19 d~~Rai~sl~~EleAI~~Y~q~a------~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~ 74 (95)
T 3k6c_A 19 DMHRAIISLREELEAVDLYNQRV------NACKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555554333467888776555 334569999999999999999999777765544
No 50
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=48.08 E-value=62 Score=24.33 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHH
Q psy8868 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTI 248 (355)
Q Consensus 187 ~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l 248 (355)
++.+++.+...=+|+|-+|...+ ..-.-|.+..+..-|+.+|-.|++....+++.+
T Consensus 19 d~~rai~aL~~EleAI~~Y~q~A------~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~ 74 (95)
T 1zpy_A 19 DMHRAIISLREELEAVDLYNQRV------NACKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666655444578999887666 334568999999999999999998766665544
No 51
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=47.81 E-value=40 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=35.1
Q ss_pred cchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHHHH
Q psy8868 221 IGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYA 279 (355)
Q Consensus 221 ~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~~ 279 (355)
...-++|.-|.+||-.|...+..++. .-.| +...+-++.|+..|.+=.
T Consensus 61 ee~k~iI~eIr~DE~rH~~~F~~lY~---TG~p--------~sY~eGL~~A~~~Eqeav 108 (115)
T 2hz8_A 61 PEKRQVIDKILEDEEKHIEWLKAASK---QGNA--------EQFASLVQQILQDEQRHV 108 (115)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHH---SSCC--------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hCCh--------HhHHHHHHHHHHHHHHHH
Confidence 55668899999999999999999988 2244 334456666776666544
No 52
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=47.72 E-value=88 Score=25.76 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=42.6
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc--ccHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy8868 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL--WTTEFC--KEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~--~~~~~~--~~i~~l~~~ave~E~~~~~~ 281 (355)
.++.+.| +||+++-++..+.+|.-|..-....+..+-. .|.+ ..++-. ..+.++++.++++|+.-+..
T Consensus 31 ~~~~~~~-l~g~a~~f~~~a~EE~~HA~~l~~~i~~~gg-~~~l~~i~~p~~~~~~~~e~le~aL~~E~~v~~~ 102 (173)
T 1s3q_A 31 SYFDSIG-LKGFSNWMRVQWQEELMHAMKMFDFVSERGG-RVKLYAVEEPPSEWDSPLAAFEHVYEHEVNVTKR 102 (173)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555 8999999999999999999866555544322 2211 000000 23667777777777765543
No 53
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=47.10 E-value=68 Score=26.19 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHHHH--
Q psy8868 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCK-- 262 (355)
Q Consensus 185 ~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~~~-- 262 (355)
.......|-. .+..|-...+--...-.++...| +++++..+..+..+|..|..-....+..+-...+-........
T Consensus 9 ~~~~~~~Ln~-~l~~E~~a~~~Y~~~a~~~~~~~-~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~ 86 (179)
T 1nfv_A 9 KAKVIEVLNK-ARAMELHAIHQYMNQHYSLDDMD-YGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQ 86 (179)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSC
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCCcCCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy8868 263 EIEQLFLKAIELEYYYAEDT 282 (355)
Q Consensus 263 ~i~~l~~~ave~E~~~~~~~ 282 (355)
.+.++++.+++.|...+...
T Consensus 87 ~~~e~l~~al~~E~~~~~~y 106 (179)
T 1nfv_A 87 AVPVIYESDADQEDATIEAY 106 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
No 54
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=45.02 E-value=35 Score=30.70 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=50.1
Q ss_pred cCCCCCcccccccchhh-hcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHH
Q psy8868 54 ANHWMPQEINMQRDIEL-WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 132 (355)
Q Consensus 54 ~~fW~p~Ei~l~~D~~d-w~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~ 132 (355)
.+-|++.-|..+.|+.. .. ..++ ++ ..++..-..++..+.+|.++.++.+.+..|.+|..
T Consensus 123 G~pWt~~yv~~~Gdl~aDL~--------------~nia----aE-~~Ar~~Y~rl~~~tdDp~vkd~L~fLi~RE~~H~~ 183 (266)
T 1o9i_A 123 GAAWNAGYVTSSGNLVADMR--------------FNVV----RE-SEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQL 183 (266)
T ss_dssp CCBCBGGGCCCCSCHHHHHH--------------HHHH----HH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccCCCHHHHHH--------------HHHH----HH-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Confidence 46788888877776653 22 1111 12 11222334677888999999999999999999999
Q ss_pred HHHHHHHHhC
Q psy8868 133 AYQYIVESLG 142 (355)
Q Consensus 133 sYs~il~~l~ 142 (355)
.|...++.+.
T Consensus 184 ~f~~aLe~l~ 193 (266)
T 1o9i_A 184 QFMKAQEELE 193 (266)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999873
No 55
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=44.47 E-value=1.3e+02 Score=24.49 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHH
Q psy8868 87 RNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLI 166 (355)
Q Consensus 87 ~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~ 166 (355)
.+|.....++. .+.+.-..++..+++|+++..+...+.+|..|.+.+..++..+..+.. ..+. . .
T Consensus 23 e~L~~A~~~E~-~a~~~Y~~~A~~~~~~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~-~~~~-~--~---------- 87 (175)
T 2fzf_A 23 ELLGMAIKAEI-GAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKE-VVFP-K--E---------- 87 (175)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCC-CCCC-S--C----------
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccch-h--h----------
Confidence 34444444443 333333457788899999999999999999999999999987632100 0000 0 0
Q ss_pred HHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHH
Q psy8868 167 PFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIME--GLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDL 244 (355)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lE--gi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l 244 (355)
..+..+. +.. ...+...+....+-. ++-.| ++-||..++ ..-.=+.+.+++..|++||..|......+
T Consensus 88 ~~~~~~~-~~~--~~~~~~~~~~~~L~~-ai~~E~~a~~~Y~~~a------~~~~d~~~r~l~~~ia~eE~~H~~~l~~~ 157 (175)
T 2fzf_A 88 HIGPELQ-PVA--RELEKVQDIIDLIRW-AMKAEEIAAEFYLKLE------EMVKEEEKKRLMRYLADMERGHYYTLRAE 157 (175)
T ss_dssp CBSCCCC-CCC--SCCCSHHHHHHHHHH-HHHHHHHHHHHHHHHH------HTSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhh-hhH--HhccccCCHHHHHHH-HHHHHHHHHHHHHHHH------hhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000 000001111111111 22223 444444433 22223899999999999999999988888
Q ss_pred HHHHHh
Q psy8868 245 INTIKM 250 (355)
Q Consensus 245 ~~~l~~ 250 (355)
+..+.+
T Consensus 158 l~~l~~ 163 (175)
T 2fzf_A 158 YELLLN 163 (175)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 777654
No 56
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=44.25 E-value=1e+02 Score=25.02 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=42.9
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc--cHHH-H-HHHHHHHHHHHHHHHHHHHh
Q psy8868 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW--TTEF-C-KEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~--~~~~-~-~~i~~l~~~ave~E~~~~~~ 281 (355)
.++.+.| +||+++.+...+.+|.-|..-....+..+-. .|..- ..+. . ..+.++++.+++.|+.-...
T Consensus 29 ~~~~~~g-l~~~a~~f~~~a~eE~~HA~~l~~~i~~~gG-~~~l~~i~~p~~~~~~~~e~l~~al~~E~~~~~~ 100 (167)
T 1krq_A 29 SWCYENS-LDGAGAFLFAHASEESDHAKKLITYLNETDS-HVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKS 100 (167)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcccCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4555555 8999999999999999999866655544322 22110 0000 0 23667888888887765543
No 57
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=43.87 E-value=85 Score=25.56 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8868 86 KRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESL 141 (355)
Q Consensus 86 ~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l 141 (355)
..+|..-..++..... .-..++..+++++++..+...+.+|..|.+.+..+++.+
T Consensus 107 ~~~L~~ai~~E~~a~~-~Y~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l 161 (175)
T 2fzf_A 107 IDLIRWAMKAEEIAAE-FYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELL 161 (175)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444544322 334566777888888888888888888888888887765
No 58
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=40.56 E-value=44 Score=30.62 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=52.7
Q ss_pred hcCCCCCcccccccchhh-hcCCCCCCHHHHHHHHHHHHHHHHhhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHH
Q psy8868 53 CANHWMPQEINMQRDIEL-WKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 131 (355)
Q Consensus 53 ~~~fW~p~Ei~l~~D~~d-w~~~~~Ls~~Er~~~~~~l~~~~~~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~ 131 (355)
..+-|++.-|..+.|+.. .. ..++ ++ ..++..-..++..+.+|.++.++.+.+..|.+|.
T Consensus 129 ~G~pWta~Yv~~~Gdl~aDL~--------------~Nia----AE-~~Ar~~Y~rL~~~tdDp~vkd~L~fLi~RE~~H~ 189 (302)
T 2v8t_A 129 MGEHWNGEYVFTSGNLILDLL--------------HNFF----LE-VAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHA 189 (302)
T ss_dssp TSCBCBGGGCCCCSCHHHHHH--------------HHHH----HH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhcCCCCHHHHHH--------------HHHH----HH-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Confidence 457899988888877653 22 1111 12 1122233467788899999999999999999999
Q ss_pred HHHHHHHHHh-CCC
Q psy8868 132 HAYQYIVESL-GLD 144 (355)
Q Consensus 132 ~sYs~il~~l-~~~ 144 (355)
..|...++.+ +.+
T Consensus 190 ~~f~~ALe~l~~~~ 203 (302)
T 2v8t_A 190 AAYGKALESLTGVE 203 (302)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhccc
Confidence 9999999998 443
No 59
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=38.55 E-value=1.7e+02 Score=24.18 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=60.5
Q ss_pred hHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcch
Q psy8868 106 GTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185 (355)
Q Consensus 106 ~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~ 185 (355)
..+..-.-+++...+..++..|..|++-+-..|..++ +.. +.|+.-++
T Consensus 30 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~i~-~t~---------enL~~a~~---------------------- 77 (170)
T 3pwf_A 30 EKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLG-KTP---------ENLQMGIE---------------------- 77 (170)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-CHH---------HHHHHHHH----------------------
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChH---------HHHHHHHH----------------------
Confidence 3556667789999999999999999986655543211 100 11111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHH
Q psy8868 186 QKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249 (355)
Q Consensus 186 ~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~ 249 (355)
. =.-|..-.|..|+ -.++.--...++..+++|.+||..|......++..+.
T Consensus 78 --------g--E~~e~~~mY~~~a---~~A~eeg~~~~a~~f~~i~~~E~~H~~~~~~~l~~l~ 128 (170)
T 3pwf_A 78 --------G--ETFEVEEMYPVYN---KAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAE 128 (170)
T ss_dssp --------H--HHHHHHTHHHHHH---HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------h--HHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0001111122222 3334333788999999999999999999888888774
No 60
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=37.68 E-value=1.3e+02 Score=24.77 Aligned_cols=68 Identities=16% Similarity=0.090 Sum_probs=43.9
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc--cH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy8868 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW--TT-EFCKEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~--~~-~~~~~i~~l~~~ave~E~~~~~~ 281 (355)
+++... -+++++..+.-...+|..|..-....++.+-. .|... .+ .....+.++++.+++.|...+..
T Consensus 51 ~~~~~~-~~~~l~~~f~~~a~eE~~Had~laeri~~lGg-~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~ 121 (182)
T 3fvb_A 51 RLLNDW-GYTRLAKKEREESIEEMHHADKLIDRIIFLEG-FPNLQTVSPLRIGQNVKEVLEADLKGEYDARAS 121 (182)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCSBCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344333 48999999999999999999977776666533 23220 00 00134667777777777766543
No 61
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=37.11 E-value=1.5e+02 Score=23.27 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=64.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHH
Q psy8868 110 HITAPECRQYLLRQAFEEAIHTHAYQYIVES--LGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQK 187 (355)
Q Consensus 110 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~--l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~ 187 (355)
.-.-+.+..++..|+.+|..|++-+-..+.. ++. |. ...| + . +...
T Consensus 36 ~~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg~-p~------~~~p-~-----------~-------------~~~e 83 (144)
T 1j30_A 36 EEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTD-PA------TDKP-I-----------G-------------TLEQ 83 (144)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC-TT------TSCB-C-----------S-------------SHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CC------cCCC-C-----------c-------------cHHH
Confidence 3455889999999999999999988777765 543 21 0112 0 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHH
Q psy8868 188 LLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIK 249 (355)
Q Consensus 188 ~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~ 249 (355)
.++. ..-.|.-..-..+.-+...++....+.+...+++|..||..|......++..+.
T Consensus 84 ~L~~----al~~E~~~~~~~y~~~~~~A~~egd~~~~~~f~~i~~~E~~H~~~~~~~l~~i~ 141 (144)
T 1j30_A 84 MIES----AIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK 141 (144)
T ss_dssp HHHH----HHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111122222122333345555556899999999999999999998888777654
No 62
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}
Probab=36.72 E-value=1.6e+02 Score=23.49 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=61.3
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchH
Q psy8868 107 TYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQ 186 (355)
Q Consensus 107 l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~ 186 (355)
.+..-.-|++..++..++..|..|++-+-.+|..++ ++. ...| + ..+.+
T Consensus 37 ~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~~~-~p~------~~~~-~-----------------------~~T~e 85 (144)
T 4di0_A 37 KADVEGQNDIAALFRSTAEGETGHAHGHLEYLEAVG-DPA------TGLP-F-----------------------GTSRQ 85 (144)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CTT------TSCC-C-----------------------SSHHH
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Ccc------cCCC-C-----------------------CcHHH
Confidence 444555688999999999999999998877776544 221 0000 0 00112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHH
Q psy8868 187 KLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLIN 246 (355)
Q Consensus 187 ~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~ 246 (355)
++-.+ +--|.--.-..+..+.-.++.-=.+.++..++.|.+||..|......++.
T Consensus 86 nL~~A-----~~GE~~e~~~~Y~~~a~~A~~eG~~~ia~~f~~~a~~E~~Ha~~~~~~l~ 140 (144)
T 4di0_A 86 NLQSA-----IAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALD 140 (144)
T ss_dssp HHHHH-----HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHhHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21111 11233222112222233444333899999999999999999987666654
No 63
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=36.29 E-value=1.2e+02 Score=25.08 Aligned_cols=68 Identities=7% Similarity=0.040 Sum_probs=44.5
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc--cHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy8868 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW--TTEFC--KEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~--~~~~~--~~i~~l~~~ave~E~~~~~~ 281 (355)
+++...| ++|++..++-...+|.-|..-.+..++.+-.. |..- .++.. ..+.++++.+++.|...+..
T Consensus 34 ~~~~~~g-f~~l~~~f~~~a~ee~~Had~laeri~~lGg~-p~~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~~ 105 (189)
T 3oj5_A 34 VYFDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLR-VEIPGVDTVRNQFDRPREALALALDQERTVTDQ 105 (189)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-eecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445667 99999999999999999999777766655332 2110 00000 23567777777777765544
No 64
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=35.88 E-value=1.4e+02 Score=23.45 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=41.7
Q ss_pred HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHH--HHhhCCccccHHHHHHHHHHHHHHHHHHHHH
Q psy8868 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINT--IKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278 (355)
Q Consensus 213 ~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~--l~~e~~~~~~~~~~~~i~~l~~~ave~E~~~ 278 (355)
++...| +++++..+.-.+.+|..|..-....+.. + .. |.. ..++ ..+.++++.+++.|..-
T Consensus 33 ~a~~~g-~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~l-g~-p~~-~~p~-~~~~e~L~~al~~E~~~ 95 (144)
T 1j30_A 33 RADEEG-YPEIAGLLRSIAEGETAHAFGHLDFIRQGGL-TD-PAT-DKPI-GTLEQMIESAIAGETYE 95 (144)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-BC-TTT-SCBC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CC-CCc-CCCC-ccHHHHHHHHHHhHHHH
Confidence 444455 7999999999999999999866665544 3 22 321 1111 34678888888888765
No 65
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=35.29 E-value=1.3e+02 Score=24.80 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc--cHHHH--HHHHHHHHHHHHHHH
Q psy8868 201 GLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW--TTEFC--KEIEQLFLKAIELEY 276 (355)
Q Consensus 201 gi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~--~~~~~--~~i~~l~~~ave~E~ 276 (355)
....|..++. ++.+.| ++|++..+.-...+|.-|..-....+..+-. .|..- ..+.. ..+.++++.+++.|+
T Consensus 34 a~~~Yl~~a~--~~~~~g-l~~~a~~f~~~a~EE~~HA~~l~e~i~~lGG-~p~l~~i~~p~~~~~~~~e~le~aL~~E~ 109 (181)
T 3bvf_A 34 SSNLYMSMSS--WCYTHS-LDGAGLFLFDHAAEEYEHAKKLIIFLNENNV-PVQLTSISAPEHKFEGLTQIFQKAYEHEQ 109 (181)
T ss_dssp HHHHHHHHHH--HHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBCCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhhCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3334444443 344444 8999999999999999999876666554432 22210 00000 236788888888888
Q ss_pred HHHHhh
Q psy8868 277 YYAEDT 282 (355)
Q Consensus 277 ~~~~~~ 282 (355)
..+..+
T Consensus 110 ~~~~~~ 115 (181)
T 3bvf_A 110 HISESI 115 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 66
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=33.43 E-value=1.6e+02 Score=24.93 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=43.6
Q ss_pred HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccccHHH--HHHHHHHHHHHHHHH-HHHH
Q psy8868 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEF--CKEIEQLFLKAIELE-YYYA 279 (355)
Q Consensus 213 ~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~~~--~~~i~~l~~~ave~E-~~~~ 279 (355)
..++.-=+++++..++.++.+|..|......++..+-. .|..-..+. ...+.+.++.+++.| .++.
T Consensus 52 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~-~~~i~~~p~~~~gst~enL~~a~~gE~~E~t 120 (202)
T 1yuz_A 52 KAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEP-GYEKPTVAAPSAYSCDLNLISGANGEIYETS 120 (202)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TCCCCCC--CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceeccCCccCCCCHHHHHHHHHHhHHHHHH
Confidence 33343348999999999999999999887777766522 232100001 134678888888888 6554
No 67
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=32.27 E-value=2.7e+02 Score=24.80 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=69.8
Q ss_pred CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHhhCHHHHHHHHHHH-H-HHHHh-----hhh------
Q psy8868 111 ITAPEC-RQYLLRQAFEEAIHTHAYQYIVESLGLD-ELEIFNAYHEIKSIRDKDEFLI-P-FIDVL-----TDL------ 175 (355)
Q Consensus 111 ~~~~E~-~~~~~~q~~~E~iH~~sYs~il~~l~~~-~~e~f~~~~~~p~l~~k~~~i~-~-~~~~~-----~~~------ 175 (355)
++.++. +..+.-.+.+|--|.+..+.++..|..+ +-+ ......+|.+.+-..-.. . +.... .|+
T Consensus 49 ~~~~~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga~~~-~~~a~~~p~~~~~~~g~n~~~~~~~g~g~~p~ds~G~pWt 127 (266)
T 1o9i_A 49 STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFG-PEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWN 127 (266)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS-HHHHHHCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCCBCB
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCcc-hhhcccchhhHhhhcCCChHHHHhcCCCCCccCCCCCCCc
Confidence 445688 8899999999999999999999999643 111 111122444321111000 0 11100 000
Q ss_pred -hhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8868 176 -KFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 176 -~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
.|-..+. + +...+.. ++..|.-. -..+.-++.+. .=|++.+++.++..||..|..-....++.+..
T Consensus 128 ~~yv~~~G-d---l~aDL~~-niaaE~~A-r~~Y~rl~~~t---dDp~vkd~L~fLi~RE~~H~~~f~~aLe~l~~ 194 (266)
T 1o9i_A 128 AGYVTSSG-N---LVADMRF-NVVRESEA-RLQVSRLYSMT---EDEGVRDMLKFLLARETQHQLQFMKAQEELEE 194 (266)
T ss_dssp GGGCCCCS-C---HHHHHHH-HHHHHHHH-HHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCC-C---HHHHHHH-HHHHHHHH-HHHHHHHHHhc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0100111 1 1222222 33445311 11222222222 24999999999999999999988888877743
No 68
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=30.88 E-value=1.7e+02 Score=23.83 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc--cHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy8868 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW--TTEFC--KEIEQLFLKAIELEYYYAED 281 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~--~~~~~--~~i~~l~~~ave~E~~~~~~ 281 (355)
.++.+.| ++|++..++-...+|.-|..-....++.+-.. |..- .++-. ..+.++++.+++.|+..+..
T Consensus 43 ~~~~~~~-~~~la~~f~~~a~EE~~HAd~l~eri~~lGg~-~~l~~i~~p~~~~~~~~e~le~~l~~E~~v~~~ 114 (176)
T 1vlg_A 43 TYFDAEG-FKGFAHWMKKQAQEELTHAMKFYEYIYERGGR-VELEAIEKPPSNWNGIKDAFEAALKHEEFVTQS 114 (176)
T ss_dssp HHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-eecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555 89999999999999999998766666654322 2110 00000 23667888888888876653
No 69
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=27.45 E-value=3.2e+02 Score=24.05 Aligned_cols=143 Identities=13% Similarity=-0.067 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH-HhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcch
Q psy8868 114 PECRQYLLRQAFEEAI-------HTHAYQYIVE-SLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKND 185 (355)
Q Consensus 114 ~E~~~~~~~q~~~E~i-------H~~sYs~il~-~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~ 185 (355)
++...-+..-..+|.= |...|++.++ .++.+++. ....|+-++-++-+.+++ . + +
T Consensus 72 ~~~~~eL~~NL~EE~G~~d~~~~H~~lyRr~L~~~lGld~~~----~~p~~sT~~~idt~~~lc-s---~--------d- 134 (244)
T 3b5o_A 72 NGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGVAVKN----TMPSVATSKLLRTVLSLF-D---R--------Q- 134 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHCCCCTT----CCCCHHHHHHHHHHHHHH-T---S--------C-
T ss_pred hHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhcCCCccc----cCCCchHHHHHHHHHHHh-C---C--------C-
Confidence 7767777677778865 9999999999 99988643 233455554444444444 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHhhcCCccchHHHHHHHHh-chhhHHhHHHHHHHHHHhhCCccccHHHH
Q psy8868 186 QKLLKSLIVFACIMEGLFFYV--GFV-QILALGRQNKMIGSSELYQYILR-DESMHCNFGIDLINTIKMENPNLWTTEFC 261 (355)
Q Consensus 186 ~~~~~~lv~f~~~lEgi~f~s--gF~-~~~~l~~~g~l~g~~~~i~~I~R-DE~~H~~~~~~l~~~l~~e~~~~~~~~~~ 261 (355)
...++-+. +.+|++.-+- -+. .+-.|.+.++-+..-.-..+=.+ +|.-|..--..++....++ ++ .
T Consensus 135 --~~~aLGA~-yatE~iaipe~~ly~~li~gL~~~~~~~~~l~FF~~HidelE~~Ha~~l~~~l~~~~~~------ee-f 204 (244)
T 3b5o_A 135 --VDYVLGAT-YAIEATSIPELTLIVKLVEWLHEGAIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQP------EE-F 204 (244)
T ss_dssp --HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHC-------CHHHHHHHTTCCG------GG-H
T ss_pred --HHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh------Hh-H
Confidence 23445553 5679985441 112 22355444432223234444434 7888998877776655443 12 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy8868 262 KEIEQLFLKAIELEYYYAEDTM 283 (355)
Q Consensus 262 ~~i~~l~~~ave~E~~~~~~~~ 283 (355)
..+.+-+..+++....|-+.+.
T Consensus 205 ~~~~~G~~~~Lda~~~fWdgL~ 226 (244)
T 3b5o_A 205 GEFAAGFRAMIDAMQVWWQELA 226 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888777766554
No 70
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.61 E-value=76 Score=26.75 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcccc-HH--HHHHHHHHHHHHHHHH-HHHHH
Q psy8868 213 ALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT-TE--FCKEIEQLFLKAIELE-YYYAE 280 (355)
Q Consensus 213 ~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~-~~--~~~~i~~l~~~ave~E-~~~~~ 280 (355)
+..+.| ++|++..++-.+..|..|..-....+. ...|.+-. .+ .-..+.+.++.|++.| .++.+
T Consensus 33 ~a~~~G-~~~iA~~f~~~A~eE~~HA~~~~~~l~---gg~~~i~~~~p~~~~~s~~e~l~~al~~E~~e~t~ 100 (191)
T 1lko_A 33 QAKKDG-FVQISDIFAETADQEREHAKRLFKFLE---GGDLEIVAAFPAGIIADTHANLIASAAGEHHEYTE 100 (191)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHCC---SSCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCC-cHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCccccCcCCccccCCHHHHHHHHHHhhHHHHHH
Confidence 344456 899999999999999999975544443 21111100 00 0134678888888888 55543
No 71
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=23.89 E-value=2.1e+02 Score=25.99 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8868 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 185 ~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
.+.+..++++|-..++++.--.+-. .+...=.-|..........-.|++|....+.++.++..
T Consensus 52 Er~~~~~~l~~~~~~D~iq~~~~~~---~~~~~~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~ 114 (319)
T 3n37_A 52 EQQLTMRVFTGLTLLDTLQNVIGAP---SLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQ 114 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH---HHGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4556777777767788877543332 22222233777777888899999999999999999874
No 72
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1
Probab=23.52 E-value=2e+02 Score=22.91 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=31.8
Q ss_pred hHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8868 103 IVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVES 140 (355)
Q Consensus 103 l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~ 140 (355)
+-..++..+++++++..+...+.+|..|......+++.
T Consensus 118 ~Y~~~a~~~~d~~~k~l~~~la~eE~~H~~~l~~~~~~ 155 (157)
T 1vjx_A 118 LYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRE 155 (157)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33457788999999999999999999999988877754
No 73
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8
Probab=23.43 E-value=2.2e+02 Score=22.80 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=36.1
Q ss_pred hHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy8868 103 IVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLD 144 (355)
Q Consensus 103 l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~ 144 (355)
+-..++..+++++++..+...+.+|..|......+++.+..+
T Consensus 111 fY~~~a~~~~d~~~k~~~~~la~eE~~H~~~l~~~~~~~~~~ 152 (167)
T 2oh3_A 111 YYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRP 152 (167)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 334577889999999999999999999999999999887655
No 74
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=23.14 E-value=3e+02 Score=22.74 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=42.0
Q ss_pred HHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc---ccHH-HHHHHHHHHHHHHHHHHHHHHhh
Q psy8868 212 LALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL---WTTE-FCKEIEQLFLKAIELEYYYAEDT 282 (355)
Q Consensus 212 ~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~---~~~~-~~~~i~~l~~~ave~E~~~~~~~ 282 (355)
.++... -++|++.-+..-+.+|.-|..-....++.+-. .|.. .... --..+.++++.++++|+.-...+
T Consensus 38 ~~f~~~-~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~Gg-~~~l~~i~~p~~~~~~~~e~le~aL~~Ek~v~~~l 110 (184)
T 3qz3_A 38 AWCEDK-GFDGAAEFLRAHAVEEMQHMQRLFTYVSETGA-LPILGAIAAPRHDFASLGEVFRETYQHEQKITQQI 110 (184)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBCCCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CcccCCCCCcccCcCCHHHHHHHHHHHHHHHHHHH
Confidence 445433 48999999999999999999865555544322 1111 0000 01235677777777777655443
No 75
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=23.11 E-value=2.9e+02 Score=22.10 Aligned_cols=61 Identities=15% Similarity=-0.005 Sum_probs=40.6
Q ss_pred CccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCccc--cHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8868 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW--TTEFC--KEIEQLFLKAIELEYYYAE 280 (355)
Q Consensus 219 ~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~--~~~~~--~~i~~l~~~ave~E~~~~~ 280 (355)
-++|++..++-...+|.-|..-....++.+-.. |... .++-. ..+.++++.+++.|...+.
T Consensus 35 ~~~~l~~~f~~~a~ee~~had~laeri~~lGg~-p~~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (174)
T 2jd6_0 35 GLEGFANWMKAQAEEEIGHALRFYNYIYDRNGR-VELDEIPKPPKEWESPLKAFEAAYEHEKFISK 99 (174)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cccCCCCCCCcCcCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998777766655322 2210 00000 2356777788877777654
No 76
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=22.70 E-value=3.1e+02 Score=22.26 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=44.8
Q ss_pred HHHhhc-CCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc--ccHH--HH-HHHHHHHHHHHHHHHHHHHhh
Q psy8868 212 LALGRQ-NKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL--WTTE--FC-KEIEQLFLKAIELEYYYAEDT 282 (355)
Q Consensus 212 ~~l~~~-g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~--~~~~--~~-~~i~~l~~~ave~E~~~~~~~ 282 (355)
.++.+. --+||+++-+..-+.+|.-|..-....+..+-. .|.+ ..++ .. ..+.++++.++++|+.-+..+
T Consensus 35 ~~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg-~~~l~~i~~p~~~~~~~~~e~le~aL~~Ek~v~~~l 110 (174)
T 2v2p_A 35 FYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKMQNQRGG-RALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQAL 110 (174)
T ss_dssp HHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCCCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 456552 248999999999999999999866655544432 2211 0000 00 246788888888888766543
No 77
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=22.50 E-value=2.4e+02 Score=25.32 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8868 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 185 ~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
.+.+...+++|-..++++.--.+-. .+...=.-|..........-.|++|....+.++.++..
T Consensus 61 Er~~~~~~l~~~~~~D~iq~~~~~~---~~~~~~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~ 123 (296)
T 3mjo_A 61 EQLATMRVFTGLTLLDTIQGTVGAI---SLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAS 123 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH---HHGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456777777767778877543322 22222223777777888899999999999999999874
No 78
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=21.68 E-value=3.6e+02 Score=22.70 Aligned_cols=140 Identities=10% Similarity=0.013 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhccCCCcchHHH
Q psy8868 113 APECRQYLLRQAFE----EAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKL 188 (355)
Q Consensus 113 ~~E~~~~~~~q~~~----E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~ 188 (355)
+++....+..++.. |. .-+..+++.++.+++++ ......|..+.-.+++...... .++
T Consensus 65 ~~~~~~~l~~~~~~~i~~E~---~lh~~~~~~~Gi~~~~~-~~~~~~p~t~aY~~~l~~~a~~--------------~~~ 126 (226)
T 1udd_A 65 EYPLMAELIELARDEVTVEV---ENYVKLLKELDLTLEDA-IKTEPTLVNSAYMDFMLATAYK--------------GNI 126 (226)
T ss_dssp CTTHHHHHHHHHHHHTTHHH---HHHHHHHHHTTCCHHHH-HHSCCCHHHHHHHHHHHHHHHH--------------SCH
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCHHHH-hhCCCCHHHHHHHHHHHHHHhc--------------CCH
Confidence 55555555554433 54 33334568888887763 4455668887777777654322 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHh---ch-hhHHhHHHHHHHHHHhhCC-ccccHHHHHH
Q psy8868 189 LKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILR---DE-SMHCNFGIDLINTIKMENP-NLWTTEFCKE 263 (355)
Q Consensus 189 ~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~R---DE-~~H~~~~~~l~~~l~~e~~-~~~~~~~~~~ 263 (355)
...+++. ..+|+++...|-...-.. .+ .|+ .---+||.. +| .-|+.....++..+ | + -+++
T Consensus 127 ~~~laAl-~pc~~~Y~~ig~~l~~~~--~~-~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~----~~~-----~~~~ 192 (226)
T 1udd_A 127 IEGLTAL-LPCFWSYAEIAEYHKDKL--RD-NPI-KIYREWGKVYLSNEYLNLVGRLRKIIDSS----GHS-----GYDR 192 (226)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHTHHHH--TT-CSC-HHHHHHHHGGGSHHHHHHHHHHHHHHHTS----CSS-----CHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcc--CC-CCC-chHHHHHHHhCCHHHHHHHHHHHHHHHhC----chh-----HHHH
Confidence 5556553 455776655443321111 12 233 222456642 22 34555555554444 2 1 1367
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy8868 264 IEQLFLKAIELEYYYAEDTMP 284 (355)
Q Consensus 264 i~~l~~~ave~E~~~~~~~~~ 284 (355)
+.+++..+++.|..|-+..+.
T Consensus 193 ~~~~f~~a~~lE~~Fwd~a~~ 213 (226)
T 1udd_A 193 LRRIFITGSKFELAFWEMAWR 213 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999987765
No 79
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.17 E-value=3.6e+02 Score=22.41 Aligned_cols=131 Identities=17% Similarity=0.085 Sum_probs=70.1
Q ss_pred HHHHHHHhhhHhhhchH--HhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHH
Q psy8868 88 NLGFFSTADSLAANNIV--LGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFL 165 (355)
Q Consensus 88 ~l~~~~~~Ds~v~~~l~--~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i 165 (355)
.|.-...+++.....+. ......-.-+.+..++-.|+.+|..|+.-+-..+. +..+. ... ..|.
T Consensus 12 ~Ln~a~~~E~~A~~~Yl~~A~~a~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~--i~~--~~p~-------- 77 (191)
T 1lko_A 12 NILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKFLE--GGDLE--IVA--AFPA-------- 77 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCC--CCC--CCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcc--ccC--cCCc--------
Confidence 34444445544333222 12334555689999999999999999987766553 22100 000 0000
Q ss_pred HHHHHHhhhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHH
Q psy8868 166 IPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLI 245 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~ 245 (355)
+.-.+....++..+ --|..-.-..+.-+.-.++.-....++..++++..+|..|......++
T Consensus 78 --------------~~~~s~~e~l~~al----~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l 139 (191)
T 1lko_A 78 --------------GIIADTHANLIASA----AGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFA 139 (191)
T ss_dssp --------------CCCCCHHHHHHHHH----HHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccCCHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111111111 112111112233333444544478899999999999999999988888
Q ss_pred HHHHh
Q psy8868 246 NTIKM 250 (355)
Q Consensus 246 ~~l~~ 250 (355)
..+..
T Consensus 140 ~~l~~ 144 (191)
T 1lko_A 140 RNIKE 144 (191)
T ss_dssp HHHHH
T ss_pred Hhhhc
Confidence 88765
No 80
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=20.51 E-value=2.3e+02 Score=25.93 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHh
Q psy8868 185 DQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKM 250 (355)
Q Consensus 185 ~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~ 250 (355)
.+.+..++++|-..++++.--.+-. .+...=.-|..........-.|++|....+.++.++..
T Consensus 62 Er~~~~~~l~~~~~~D~iq~~~~~~---~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~ 124 (329)
T 3dhz_A 62 EQLATMRVFTGLTLLDTIQGTVGAI---SLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAS 124 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH---HTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556777777767778877543322 22222233777777888899999999999999999874
Done!