RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8868
(355 letters)
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 268 bits (686), Expect = 4e-89
Identities = 172/309 (55%), Positives = 230/309 (74%), Gaps = 3/309 (0%)
Query: 19 RINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
R+N +K+++N + DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+ L
Sbjct: 11 RVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-RL 69
Query: 78 TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
+E+ERR++ NLGFFSTA+SL NNIVL ++H+T PE RQYLLRQAFEEA+HTH + YI
Sbjct: 70 SEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYI 129
Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
ESLGLDE EIFNAY+E +I+ KD+F + + D F+T + + Q+ +K+L+ +
Sbjct: 130 CESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYI 189
Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
IMEG+FFY GFV IL+ RQNKMIG E YQYILRDE++H NFGIDLIN IK ENP +WT
Sbjct: 190 IMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWT 249
Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
E +EI +L +A++LE YA+D +P+GILGL F Y++ IA+ R+++IG+K I+
Sbjct: 250 PELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYH 309
Query: 318 YERNPFPWM 326
+NPFPWM
Sbjct: 310 -TKNPFPWM 317
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 211 bits (538), Expect = 1e-66
Identities = 70/320 (21%), Positives = 141/320 (44%), Gaps = 24/320 (7%)
Query: 32 TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGF 91
+V + KY+ + W P+E+++ RD ++ L E E+ + NL +
Sbjct: 23 VNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKY 79
Query: 92 FSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNA 151
+ DS+ + + I+ PE ++ AF E IH+ +Y +I+ ++ D +F+
Sbjct: 80 QTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDD 139
Query: 152 YHEIKSIRDKDEFLIPFIDVLTDLKFK----------------TGNTKNDQKLLKSLIVF 195
+ I+ + E + + D L ++ T + + +K L ++
Sbjct: 140 IVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMS 199
Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN- 254
+E + FYV F A + M G++++ + I RDE++H ++N ++ +
Sbjct: 200 VNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDP 259
Query: 255 ---LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKG-ILGLNVKTFKSYLRFIANCRMKQI 310
E +E LF++A + E +A+ G ++GLN Y+ +I N RM+ +
Sbjct: 260 EMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAV 319
Query: 311 GIKQIFPYERNPFPWMSEMI 330
G+ F NP PW++ +
Sbjct: 320 GLDLPFQTRSNPIPWINTWL 339
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 193 bits (490), Expect = 2e-59
Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 26/293 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
L P KY+ W Y + A+ W +EI++ +DI W N + E ER + R L FF+ +D
Sbjct: 63 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASD 120
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL---EIFNAYH 153
+ N+V + PE + + Q E IH+ Y ++++ D +FNA H
Sbjct: 121 GIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIH 180
Query: 154 EIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILA 213
I I +K E+ + +I L + +EG+FF F I
Sbjct: 181 TIPEIGEKAEWALRWIQDADALFGERLV-------------AFASIEGVFFSGSFASIFW 227
Query: 214 LGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIE 273
L ++ M G + + I RDE +H +F L +K + + E A+E
Sbjct: 228 LKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTE-------AVE 280
Query: 274 LEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWM 326
+E Y D +P +LG+N Y+ F+A+ + G K+ + NPF +M
Sbjct: 281 IEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPFDFM 332
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 171 bits (434), Expect = 8e-52
Identities = 57/282 (20%), Positives = 122/282 (43%), Gaps = 25/282 (8%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P KY+ W Y A+ W +EI + +D E ++ LT++++ + L ++D
Sbjct: 27 MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 83
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELE--IFNAYHE 154
+L ++ + PE + + Q E I++ Y +V++ D +F
Sbjct: 84 NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 143
Query: 155 IKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILAL 214
+ ++ K F+ +I ND L +V EG+F + + L
Sbjct: 144 LPEVKHKAAFIERWIS-------------NDDSLYAERLVAFAAKEGIFQAGNYASMFWL 190
Query: 215 GRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIEL 274
+ M G + + I RD + +F L ++ + K IE++ +A+E+
Sbjct: 191 TDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTK-------PNPKIIEKIITEAVEI 243
Query: 275 EYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
E Y +++P G+++K+ +Y+ F+A+ ++ G ++ +
Sbjct: 244 EKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 171 bits (433), Expect = 1e-51
Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 28/294 (9%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
+ + + + +N W+P+++ + DI W+ L+ E++L R + D++
Sbjct: 10 QDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQN 66
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSI 158
P L +F EA+H +Y I +L + + E +
Sbjct: 67 IAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPL 126
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
+ K + ++ LK + + +E FY GF + +
Sbjct: 127 QRKAQIILAHYVSDEPLKK---------------KIASVFLESFLFYSGFWLPMYFSSRG 171
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
K+ +++L + I+RDE++H + + + E L ++ + E Y
Sbjct: 172 KLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRY 231
Query: 279 AEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYER---NP--FPWMS 327
E + V K++L + AN + +G + +FP E NP +S
Sbjct: 232 TEALYAETGW---VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 168 bits (425), Expect = 1e-50
Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 21/287 (7%)
Query: 37 LVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTAD 96
+ P +Y+ W Y + A+ W +E+++ +DI+ W+ L +ER + L FF+ +D
Sbjct: 16 VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASD 72
Query: 97 SLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIK 156
+ N+V + + E R + Q E IH+ Y ++++ D E ++ I+
Sbjct: 73 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIE 132
Query: 157 SIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGR 216
++ + + + + +V +EG+FF F I L +
Sbjct: 133 TMPCVKKKADWALR----------WIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKK 182
Query: 217 QNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEY 276
+ M G + + I RDE +HC+F + + + E A+ +E
Sbjct: 183 RGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITN-------AVRIEQ 235
Query: 277 YYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPF 323
+ + +P ++G+N K Y+ F+A+ M ++G +IF NPF
Sbjct: 236 EFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR-VENPF 281
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 166 bits (420), Expect = 1e-49
Identities = 56/281 (19%), Positives = 107/281 (38%), Gaps = 23/281 (8%)
Query: 41 KYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAA 100
+ + N W+P++I + DI+ W +T +E+ R + D++
Sbjct: 12 PDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQG 68
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEL--EIFNAYHEIKSI 158
+ AF E++H +Y I +L E F E +++
Sbjct: 69 TVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENL 128
Query: 159 RDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQN 218
+ K + ++ + + LK K V + ++E FY GF + L +
Sbjct: 129 QRKAKIIMSYYNGDDPLKKK---------------VASTLLESFLFYSGFYLPMYLSSRA 173
Query: 219 KMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYY 278
K+ ++++ + I+RDES+H + + E+ L E E Y
Sbjct: 174 KLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEY 233
Query: 279 AEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYE 319
ED LG + K +LR+ AN + +G + +FP +
Sbjct: 234 TEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTD 271
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042
{Bacillus cereus [TaxId: 1396]}
Length = 134
Score = 27.9 bits (62), Expect = 1.1
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 26/101 (25%)
Query: 259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLN---------VKTFKSYL-RFIANCRMK 308
+F + E + A Y +T P+ I N + FK + I C++
Sbjct: 48 QFYRLFEHIEQIAHS----YTNETDPEQIKRFNAEVQQAATNIWGFKRKILGLILTCKLP 103
Query: 309 QIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSG 349
FP + + H +E+++F R+++ G
Sbjct: 104 GQNN----------FPLLVD--HTSREADYFRKRLIQLNEG 132
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.1 bits (59), Expect = 3.1
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 108 YRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
R + E + QA E H Y Y++ + D+ + A ++K+I
Sbjct: 135 GRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVN---DDFD--TALTDLKTI 180
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 26.3 bits (57), Expect = 4.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 101 NNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
VL + IT + R+ R E T + IVE D E YH++K +
Sbjct: 130 LENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEG---DSFE--EIYHKVKRV 182
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.7 bits (55), Expect = 8.3
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 108 YRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSI 158
R + Q L A E + +V + L+ A E+ S+
Sbjct: 135 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES-----ACAELVSL 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.421
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,403,038
Number of extensions: 68130
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 27
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)