BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8869
(593 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 594 bits (1531), Expect = e-170, Method: Compositional matrix adjust.
Identities = 278/382 (72%), Positives = 322/382 (84%), Gaps = 2/382 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
M+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 285 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 344
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 345 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 404
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 405 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 464
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 465 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 522
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 523 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 583 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 642
Query: 361 ITVRLINPIAMEEGLRFAIREG 382
+ V LI+PIAM++GLRFAIREG
Sbjct: 643 MVVTLIHPIAMDDGLRFAIREG 664
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 593 bits (1528), Expect = e-169, Method: Compositional matrix adjust.
Identities = 278/382 (72%), Positives = 322/382 (84%), Gaps = 2/382 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
M+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 285 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 344
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 345 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 404
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 405 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 464
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 465 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 522
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 523 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 583 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 642
Query: 361 ITVRLINPIAMEEGLRFAIREG 382
+ V LI+PIAM++GLRFAIREG
Sbjct: 643 MVVTLIHPIAMDDGLRFAIREG 664
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/382 (73%), Positives = 322/382 (84%), Gaps = 2/382 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
MAK KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 61 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 121 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 180
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 181 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 238
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 239 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 298
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 299 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 358
Query: 361 ITVRLINPIAMEEGLRFAIREG 382
+ V LI+PIAM++GLRFAIREG
Sbjct: 359 MVVTLIHPIAMDDGLRFAIREG 380
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 278/382 (72%), Positives = 322/382 (84%), Gaps = 2/382 (0%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG 60
M+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARG
Sbjct: 1 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHI
Sbjct: 61 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALE
Sbjct: 121 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 180
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240
GD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++
Sbjct: 181 GDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 238
Query: 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+
Sbjct: 239 VGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 298
Query: 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVL 360
IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 299 IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIK 358
Query: 361 ITVRLINPIAMEEGLRFAIREG 382
+ V LI+PIAM++GLRFAIREG
Sbjct: 359 MVVTLIHPIAMDDGLRFAIREG 380
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 587 bits (1512), Expect = e-168, Method: Compositional matrix adjust.
Identities = 278/381 (72%), Positives = 321/381 (84%), Gaps = 2/381 (0%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
AK KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGI
Sbjct: 1 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 181 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 239 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 298
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 299 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 358
Query: 362 TVRLINPIAMEEGLRFAIREG 382
V LI+PIAM++GLRFAIREG
Sbjct: 359 VVTLIHPIAMDDGLRFAIREG 379
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/381 (72%), Positives = 321/381 (84%), Gaps = 2/381 (0%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 181 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 239 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 298
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 299 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 358
Query: 362 TVRLINPIAMEEGLRFAIREG 382
V LI+PIAM++GLRFAIREG
Sbjct: 359 VVTLIHPIAMDDGLRFAIREG 379
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 585 bits (1507), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/381 (72%), Positives = 321/381 (84%), Gaps = 2/381 (0%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 181 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 239 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 298
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 299 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 358
Query: 362 TVRLINPIAMEEGLRFAIREG 382
V LI+PIAM++GLRFAIREG
Sbjct: 359 VVTLIHPIAMDDGLRFAIREG 379
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/373 (72%), Positives = 314/373 (84%), Gaps = 2/373 (0%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
KPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+++DQID APEEKARGITINT+H+E
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 60
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
Y+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP
Sbjct: 61 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 130 YIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ 189
YI+VFLNK DM ++Y+FPG+D PI++GSA ALEGD E
Sbjct: 121 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEA 178
Query: 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 249
IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+G
Sbjct: 179 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 238
Query: 250 IKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTG 309
IK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+IKPH F
Sbjct: 239 IKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFES 298
Query: 310 EIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPI 369
E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ + V LI+PI
Sbjct: 299 EVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPI 358
Query: 370 AMEEGLRFAIREG 382
AM++GLRFAIREG
Sbjct: 359 AMDDGLRFAIREG 371
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 554 bits (1427), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/381 (70%), Positives = 308/381 (80%), Gaps = 16/381 (4%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
+K KFERTKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG ARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG--------------AARGI 46
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHIL
Sbjct: 47 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 106
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
L RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA ALEG
Sbjct: 107 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 166
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
D E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI++V
Sbjct: 167 DAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 224
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
GEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG+I
Sbjct: 225 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 284
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
KPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+ +
Sbjct: 285 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKM 344
Query: 362 TVRLINPIAMEEGLRFAIREG 382
V LI+PIAM++GLRFAIREG
Sbjct: 345 VVTLIHPIAMDDGLRFAIREG 365
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/392 (66%), Positives = 298/392 (76%), Gaps = 10/392 (2%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKAR 59
MAK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+AR
Sbjct: 1 MAKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERAR 60
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREH
Sbjct: 61 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREH 120
Query: 120 ILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLAL 179
ILLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LAL
Sbjct: 121 ILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLAL 180
Query: 180 E----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVT 231
E GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV T
Sbjct: 181 EQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVAT 240
Query: 232 GRVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290
GR+ERG V+VG+E+EI+G+ +T +T TGVEM RK L +G AGDN+G+LLRG RE+VE
Sbjct: 241 GRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVE 300
Query: 291 RGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNK 350
RGQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP
Sbjct: 301 RGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGV 360
Query: 351 EMVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
EMVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 EMVMPGDNVTFTVELIKPVALEEGLRFAIREG 392
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 261/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG + LP+ E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRLPQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 519 bits (1336), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FF+ YRPQFYFRTTDVTG + LP+ E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FF+ YRPQFYFRTTDVTG + LP+ E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T KT TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T +T TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/391 (66%), Positives = 297/391 (75%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTKPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGVPYIVVF+NK DM N+YEFPG+++P+I+GSA LALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YIPTP R +D FL+PVEDVF+I+GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGIK-DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ +T +T TGVEM RK L +G AGDN+G+LLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAKPGSI PH F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP E
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVMPGDNV TV LI P+A+EEGLRFAIREG
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREG 391
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/323 (71%), Positives = 268/323 (82%), Gaps = 2/323 (0%)
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITINT+H+EY+T RHYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 120 ILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLAL 179
ILL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 180 EGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIV 239
EGD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI+
Sbjct: 121 EGDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 240 RVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299
+VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG
Sbjct: 179 KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 238
Query: 300 SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNV 359
+IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 239 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 298
Query: 360 LITVRLINPIAMEEGLRFAIREG 382
+ V LI+PIAM++GLRFAIREG
Sbjct: 299 KMVVTLIHPIAMDDGLRFAIREG 321
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/323 (71%), Positives = 267/323 (82%), Gaps = 2/323 (0%)
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITINT+H+EY+T RHYAHVD PGHADY+KNMITGAAQMDGAILV +A DGPMPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 120 ILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLAL 179
ILL RQVGVPYI+VFLNK DM ++Y+FPG+D PI++GSA AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 180 EGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIV 239
EGD E IL L+ LD+YIP P RAID FLLP+EDVFSISGRGTVVTGRVERGI+
Sbjct: 121 EGDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 240 RVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299
+VGEE+EI+GIK+T K+TCTGVEMFRKLLD+G+AG+N+G+LLRG KRE++ERGQVLAKPG
Sbjct: 179 KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 238
Query: 300 SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNV 359
+IKPH F E+Y LSKDEGGRHTPFF YRPQFYFRTTDVTG+IELP+ EMVMPGDN+
Sbjct: 239 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 298
Query: 360 LITVRLINPIAMEEGLRFAIREG 382
+ V LI+PIAM++GLRFAIREG
Sbjct: 299 KMVVTLIHPIAMDDGLRFAIREG 321
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/391 (62%), Positives = 281/391 (71%), Gaps = 10/391 (2%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARG 60
AK +F RTK H+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID A EE+ARG
Sbjct: 1 AKGEFIRTKRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARG 60
Query: 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
ITINTAH+EYET RHY+HVDC GHADYIKNMITGAAQMDGAILV SAADG M QTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHI 120
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
LLARQVGV YIVVF+NK DM N+YEF G+++ +I+GSA LALE
Sbjct: 121 LLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALE 180
Query: 181 ----GDTGPLGEQS----ILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232
GE I L A+D YI T R +D FL+ VEDVF+I+GRGTV TG
Sbjct: 181 EMHKNRKTKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATG 240
Query: 233 RVERGIVRVGEELEIIGI-KDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291
R+ERG V+VG+E+EI+G+ ++T KT TGVEM RK L +G AGDN+GLLLRG RE+VER
Sbjct: 241 RIERGKVKVGDEVEIVGLARETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKE 351
GQVLAK GSI H F +Y L K+EGGRHT FF+ YR QFYFRTTDVTG + L + E
Sbjct: 301 GQVLAKRGSITRHTKFEASVYILKKEEGGRHTGFFTGYRRQFYFRTTDVTGVVRLRQGVE 360
Query: 352 MVMPGDNVLITVRLINPIAMEEGLRFAIREG 382
MVM GDNV TV LI +A+EEGLRFAIREG
Sbjct: 361 MVMRGDNVTFTVELIKRVALEEGLRFAIREG 391
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 267/373 (71%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
KPH+NVGTIGHVDHGKTTLTAAI +L++ G + K Y++ID APEE+ARGITIN AH+E
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
Y T ARHYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 130 YIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ 189
++VV++NKAD ++ + G + PII GSA ALE LG +
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLK 180
Query: 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIG 249
S+ L A+DTYIP P R ++ FLLPVE V+SI GRGTVVTG +ERGI++ G+E E +G
Sbjct: 181 SVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG 240
Query: 250 IKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTG 309
++T TG+EMF K LD+ +AGDN+G L+RG KRED+ RG V+AKPGSI+PH+
Sbjct: 241 HSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEA 300
Query: 310 EIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPI 369
++Y L+K+EGGRH PF S++ P + T D+ I LP KE+ MPG+++ +T+ L P+
Sbjct: 301 QVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPM 360
Query: 370 AMEEGLRFAIREG 382
+E+G RF +R+G
Sbjct: 361 ILEKGQRFTLRDG 373
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/381 (53%), Positives = 265/381 (69%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI 61
AK + R KPH+NVGTIGHVDHGKTTLTAAI +L++ G + K Y++ID APEE+ARGI
Sbjct: 4 AKKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI 63
Query: 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL 121
TIN AH+EY T ARHYAH DCPGHADY+KN ITG A +DG ILV +A DGP PQTREH+L
Sbjct: 64 TINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLL 123
Query: 122 LARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEG 181
LARQ+GV ++VV++NKAD ++ + G + PII GSA ALE
Sbjct: 124 LARQIGVEHVVVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ 183
Query: 182 DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
LG +S+ L A+DTYIP P R ++ FLLPVE V+SI GRGTVVTG +ERGI++
Sbjct: 184 RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKK 243
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301
G+E E +G ++T TG+E F K LD+ +AGDN+G L+RG KRED+ RG V AKPGSI
Sbjct: 244 GDECEFLGHSKNIRTVVTGIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKPGSI 303
Query: 302 KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLI 361
+PH+ ++Y L+K+EGGRH PF S++ P + T D I LP KE+ PG+++ +
Sbjct: 304 QPHQKVEAQVYILTKEEGGRHKPFVSHFXPVXFSLTWDXACRIILPPGKELAXPGEDLKL 363
Query: 362 TVRLINPIAMEEGLRFAIREG 382
T+ L P +E+G RF +R+G
Sbjct: 364 TLILRQPXILEKGQRFTLRDG 384
>pdb|2JVV|A Chain A, Solution Structure Of E. Coli Nusg Carboxyterminal Domain
Length = 181
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 123/175 (70%)
Query: 418 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 477
KKRWYV+ ++SG E V L E I M+ FG ++VPTEE+V+++ Q+ +++FF
Sbjct: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65
Query: 478 PGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTPXXXXXXXXXXXXXXXGVEKPRPK 537
PGYVL++M M D SWHLV++ +V GFIGG S+RP P +KPRPK
Sbjct: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125
Query: 538 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 592
L++ E+VR+ DGPF DF+G +EEV+YEKSR++VSV+IFGRATPVEL+F+QVEK
Sbjct: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 206/421 (48%), Gaps = 59/421 (14%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVL--------------SKKFGGEAKSYDQI-DAAP 54
KPH+N+ IGHVDHGK+TL + L +K G E+ + I D
Sbjct: 4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 63
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ RGITI+ +++ETK + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 64 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPG-- 165
QTREH+LLAR +G+ I+V +NK D + G
Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 183
Query: 166 -NDIPIIKGSAKLALEGDTGPLGEQSI-------LSLSKALDTYIPTPNRAIDGAFLLPV 217
+ IP I S A +GD L E+S +L +ALD P P + +D +PV
Sbjct: 184 VDKIPFIPVS---AWKGDN--LIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPV 237
Query: 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNI 277
++V+SI G GTV GRVE G++RVG+ +++ + V +EM + L Q + GDNI
Sbjct: 238 QNVYSIPGAGTVPVGRVETGVLRVGD--KVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNI 295
Query: 278 GLLLRGTKREDVERGQV---LAKPGSIKPHKHFTGEIYALSKDEGGR--HTPFFSNYRPQ 332
G +RG + D++RG V L KP ++ + F I+ + +TP +
Sbjct: 296 GFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSAITVGYTPVIHVHTAS 353
Query: 333 FYFRTTDVTGSIE------LPKNKEMVMPGDNVLITVRLINPIAMEEGL------RFAIR 380
R ++ ++ + +N + + GD ++ + + P+ +E+ RFA+R
Sbjct: 354 VSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMR 413
Query: 381 E 381
+
Sbjct: 414 D 414
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 206/421 (48%), Gaps = 59/421 (14%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVL--------------SKKFGGEAKSYDQI-DAAP 54
KPH+N+ IGHVDHGK+TL + L +K G E+ + I D
Sbjct: 7 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 66
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ RGITI+ +++ETK + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 67 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 126
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPG-- 165
QTREH+LLAR +G+ I+V +NK D + G
Sbjct: 127 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 186
Query: 166 -NDIPIIKGSAKLALEGDTGPLGEQSI-------LSLSKALDTYIPTPNRAIDGAFLLPV 217
+ IP I S A +GD L E+S +L +ALD P P + +D +PV
Sbjct: 187 VDKIPFIPVS---AWKGDN--LIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPV 240
Query: 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNI 277
++V+SI G GTV GRVE G++RVG+ +++ + V +EM + L Q + GDNI
Sbjct: 241 QNVYSIPGAGTVPVGRVETGVLRVGD--KVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNI 298
Query: 278 GLLLRGTKREDVERGQV---LAKPGSIKPHKHFTGEIYALSKDEGGR--HTPFFSNYRPQ 332
G +RG + D++RG V L KP ++ + F I+ + +TP +
Sbjct: 299 GFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSAITVGYTPVIHVHTAS 356
Query: 333 FYFRTTDVTGSIE------LPKNKEMVMPGDNVLITVRLINPIAMEEGL------RFAIR 380
R ++ ++ + +N + + GD ++ + + P+ +E+ RFA+R
Sbjct: 357 VSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMR 416
Query: 381 E 381
+
Sbjct: 417 D 417
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 201/422 (47%), Gaps = 61/422 (14%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAI--------------ATVLSKKFGGEAKSYD-QIDAAP 54
KPH+N+ IGHVDHGK+TL + A +KK G E++ + +D
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ RG+TIN + +ETK + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 64 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMXX---XXXXXXXXXXXXXXXXNKYEFP 164
QTREHI+LA+ +G+ ++V +NK D+ Y F
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 183
Query: 165 GNDIPIIKGSAKLALEGDTGPLGEQSIL-----SLSKALDTYIPTPNRAIDGAFLLPVED 219
N + + +A GD +++ +L + LD + P + +D +P++D
Sbjct: 184 TNKVRFV---PVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKPVDKPLRIPIQD 239
Query: 220 VFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGL 279
V+SISG GTV GRVE G+++VG+ +I+ + +E +D+ + GDNIG
Sbjct: 240 VYSISGVGTVPVGRVESGVLKVGD--KIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGF 297
Query: 280 LLRGTKREDVERGQVLAKPGSIKP-HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTT 338
+RG +++D++RG V+ P + FT I + T + Y P + T
Sbjct: 298 NVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV-----WHPTALANGYTPVLHVHTA 352
Query: 339 DVTGSI-------------ELPKNKEMVMPGDNVLITVRLINPIAMEEGL------RFAI 379
V + E KN + + GD ++ + I P+ +E+ RFA+
Sbjct: 353 SVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAM 412
Query: 380 RE 381
R+
Sbjct: 413 RD 414
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 29/292 (9%)
Query: 10 KPH-----INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN 64
+PH IN+G GH+DHGKTTL+ + + S ++D++ PE + RGITI+
Sbjct: 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIAS------TSAHDKL---PESQKRGITID 62
Query: 65 TAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR 124
++ + VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+
Sbjct: 63 IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILD 122
Query: 125 QVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGND-IPIIKGSAKLALEGDT 183
+P IVV + K+D + + + IPI SAK D
Sbjct: 123 HFNIPIIVV-ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI---SAKTGFGVD- 177
Query: 184 GPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243
L I +L+ A R + F +P++ F I G GTVVTG + +GIV+VG+
Sbjct: 178 -ELKNLIITTLNNA------EIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGD 230
Query: 244 ELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295
EL+++ I + T ++ F++ + + +AGD +G+ ++G + + RG +L
Sbjct: 231 ELKVLPI--NMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 151/332 (45%), Gaps = 52/332 (15%)
Query: 8 RTKPHINVGTIGHVDHGKTTLTA-------AIATVLSKKFGGEAKSYDQ--------IDA 52
+ K HINV IGHVD GK+T T I +KF EA + +D
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 62
Query: 53 APEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP 112
E+ RGITI+ A ++ET +D PGH D+IKNMITG +Q D AIL+ + G
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 113 MP-------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXX------XN 159
QTREH LLA +GV ++V +NK D N
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 182
Query: 160 KYEFP--------GNDI-------PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204
P G+++ P KG K E G + +++L +A+D I
Sbjct: 183 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEK---ETKAGVVKGKTLL---EAIDA-IEQ 235
Query: 205 PNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF 264
P+R D LP++DV+ I G GTV GRVE G+++ G + + V T VEM
Sbjct: 236 PSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG--MVVTFAPAGVTTEVKSVEMH 293
Query: 265 RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296
+ L+QG GDN+G ++ +++ RG V
Sbjct: 294 HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCG 325
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 153/324 (47%), Gaps = 41/324 (12%)
Query: 10 KPHINVGTIGHVDHGKTT-------LTAAIATVLSKKFGGEAKSYDQ--------IDAAP 54
K H+NV IGHVD GK+T LT + +K+ EAK ++ +D
Sbjct: 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQ 74
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ +G T+ +ET+ +H+ +D PGH ++ NMI GA+Q D A+LV SA G
Sbjct: 75 EERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE 134
Query: 115 -------QTREHILLARQVGVPYIVVFLNKAD---MXXXXXXXXXXXXXXXXXXNKYEF- 163
QTREH +LA+ GV +++V +NK D + K F
Sbjct: 135 TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 194
Query: 164 PGNDIPIIKGS----AKLALEGDTGP--LGEQSILSLSKALDTYIPTPNRAIDGAFLLPV 217
P DI + S A L + D P +G L LD +P NR++DG LP+
Sbjct: 195 PKKDIHFMPCSGLTGANLKEQSDFCPWYIG----LPFIPYLDN-LPNFNRSVDGPIRLPI 249
Query: 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNI 277
D + GTVV G++E G + G++L ++ K V+ G+ D G+N+
Sbjct: 250 VDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEV--LGILSDDTETDFVAPGENL 305
Query: 278 GLLLRGTKREDVERGQVLAKPGSI 301
+ L+G + E++ G +L P ++
Sbjct: 306 KIRLKGIEEEEILPGFILCDPSNL 329
>pdb|2K06|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli
Nusg
Length = 123
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%)
Query: 418 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 477
KKRWYV+ ++SG E V L E I M+ FG ++VPTEE+V+++ Q+ +++FF
Sbjct: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65
Query: 478 PGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTP 514
PGYVL++M M D SWHLV++ +V GFIGG S+RP P
Sbjct: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP 102
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 26/256 (10%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVL-SKKFGGEAKSYDQIDAA--PEEKARGIT 62
+ + +P +N+G +GHVDHGKTTL AI + SKK G + ++ PE +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPS 61
Query: 63 INTAHIEYETK-ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-PMPQTREHI 120
+ + E K R + +D PGH + M++GAA MDGAILV +A + P PQTREH
Sbjct: 62 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 121
Query: 121 LLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALE 180
+ +GV +++ NK D+ + ++PII SA
Sbjct: 122 VALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPIIPVSA----- 173
Query: 181 GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT--------VVTG 232
L + +I SL + ++ YI TP R + ++ V F ++ GT V+ G
Sbjct: 174 -----LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGG 228
Query: 233 RVERGIVRVGEELEII 248
+ +G+ +V +E++++
Sbjct: 229 SIIQGLFKVDQEIKVL 244
>pdb|2LQ8|A Chain A, Domain Interaction In Thermotoga Maritima Nusg
Length = 177
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 105/180 (58%), Gaps = 11/180 (6%)
Query: 418 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 477
KK+WY++ + SG E+ V+ + +++ G++ GRI++P + + +KS ++ F
Sbjct: 4 KKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIP----IRGGQRRKS---EKLF 56
Query: 478 PGYVLIEMEMTDESWHLVKNTKKVTGFIG-GKSNRPTPXXXXXXXXXXXXXXXGVEKPRP 536
PGYV +EM M DE+++ V++ V GF+ G P EK +P
Sbjct: 57 PGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYEEKKKP 116
Query: 537 ---KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 593
++ +++ ++V+I GPF DF+G I+E++ E+ ++V+VTIFGR TPV L ++VEKI
Sbjct: 117 VKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI 176
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 144/340 (42%), Gaps = 71/340 (20%)
Query: 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI 68
++ +N+G +GHVDHGKT+LT A+ V + D EE RGI+I +
Sbjct: 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGYA 51
Query: 69 EYETK-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILV 105
+ E + R + VD PGH + M++GA+ MDGAILV
Sbjct: 52 DCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILV 111
Query: 106 CSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFP 164
+A + P PQT+EH++ +G+ I++ NK D+
Sbjct: 112 IAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTI--- 168
Query: 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224
+ PII SA E +I L KA+ +IPTP R D + V F I+
Sbjct: 169 AENAPIIPISAH----------HEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218
Query: 225 GRGT--------VVTGRVERGIVRVGEELEI-IGIKDT---------VKTTCTGVEMFRK 266
GT V+ G + +G+ +VG+E+EI GIK T + T +
Sbjct: 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNT 278
Query: 267 LLDQGQAGDNIGL---LLRGTKREDVERGQVLAKPGSIKP 303
+L + G IG+ L + D G V+ PG++ P
Sbjct: 279 ILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPP 318
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT 65
+ + +P +N+G +GHVDHGKTTL AI + + K E K I E G+ +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 61
Query: 66 AHIE-YETKA--------------RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD 110
E Y T+ R + +D PGH + M++GAA MDGAILV +A +
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Query: 111 G-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIP 169
P PQTREH + +GV +++ NK D+ + ++P
Sbjct: 122 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVP 178
Query: 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT- 228
II SA L + +I SL + ++ YI TP R + ++ V F ++ GT
Sbjct: 179 IIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 228
Query: 229 -------VVTGRVERGIVRVGEELEII 248
V+ G + +G+ +V +E++++
Sbjct: 229 FNELKGGVIGGSIIQGLFKVDQEIKVL 255
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT 65
+ + +P +N+G +GHVDHGKTTL AI + + K E K I E G+ +
Sbjct: 3 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 62
Query: 66 AHIE-YETKA--------------RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD 110
E Y T+ R + +D PGH + M++GAA MDGAILV +A +
Sbjct: 63 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 122
Query: 111 G-PMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIP 169
P PQTREH + +GV +++ NK D+ + ++P
Sbjct: 123 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVP 179
Query: 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT- 228
II SA L + +I SL + ++ YI TP R + ++ V F ++ GT
Sbjct: 180 IIPVSA----------LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQ 229
Query: 229 -------VVTGRVERGIVRVGEELEII 248
V+ G + +G+ +V +E++++
Sbjct: 230 FNELKGGVIGGSIIQGLFKVDQEIKVL 256
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 32/262 (12%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEA--KSYDQIDAA-------PEE 56
+ + +P +N+G +GHVDHGKTTL AI + + K E Y + + PE
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEA 61
Query: 57 KARGITINTAHIEYETK-ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-PMP 114
+ + + E K R + +D PGH + M++GAA MDGAILV +A + P P
Sbjct: 62 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 121
Query: 115 QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGS 174
QTREH + +GV +++ NK D+ + ++PII S
Sbjct: 122 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPIIPVS 178
Query: 175 AKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT------ 228
A L + +I SL + ++ YI TP R + ++ V F ++ GT
Sbjct: 179 A----------LHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELK 228
Query: 229 --VVTGRVERGIVRVGEELEII 248
V+ G + +G+ +V +E++++
Sbjct: 229 GGVIGGSIIQGLFKVDQEIKVL 250
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 40/319 (12%)
Query: 10 KPHINVGTIGHVDHGKTTL-------TAAIATVLSKKFGGEAKSYDQ--------IDAAP 54
K H+N+ IGHVD GK+TL T + +K EAK + +D+
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 100
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ +G T+ +ET+ R ++ +D PGH Y+ NMI GA+Q D +LV SA G
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 115 -------QTREHILLARQVGVPYIVVFLNKAD----------MXXXXXXXXXXXXXXXXX 157
QTREH +LAR G+ ++VV +NK D
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220
Query: 158 XNKYEFPGNDIPIIKG-SAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLP 216
+K + + G + K ++ P + SL + LD+ + R ++ F++P
Sbjct: 221 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP--SLLEYLDS-MTHLERKVNAPFIMP 277
Query: 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDN 276
+ + GT++ G++E G ++ + ++ I T++ T E + + GD
Sbjct: 278 IASKY--KDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE-ISSSICGDQ 334
Query: 277 IGLLLRGTKREDVERGQVL 295
+ L +RG DV+ G VL
Sbjct: 335 VRLRVRGDD-SDVQTGYVL 352
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 145/339 (42%), Gaps = 77/339 (22%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
+N+G +GHVDHGKTTLT A+ V + D EE RGITI + E
Sbjct: 12 VNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAEI 58
Query: 73 K-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAA 109
+ R + +D PGH + M+ GA+ MDGAILV +A
Sbjct: 59 RRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAAN 118
Query: 110 D-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDI 168
+ P PQTREH++ + +G I++ NK ++ +
Sbjct: 119 EPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTV---AENA 175
Query: 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT 228
PII SA L +I L KA++ +IPTP R + + V F ++ GT
Sbjct: 176 PIIPISA----------LHGANIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGT 225
Query: 229 --------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVEMFRKLLDQ 270
V+ G + +G ++VG+E+EI G+ + + T ++ + +++
Sbjct: 226 PPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEE 285
Query: 271 GQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 303
G +G+ GTK + D+ G V+ KPG + P
Sbjct: 286 AYPGGLVGI---GTKLDPYLTKGDLMAGNVVGKPGKLPP 321
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 145/339 (42%), Gaps = 77/339 (22%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
+N+G +GHVDHGKTTLT A+ V + D EE RGITI + E
Sbjct: 11 VNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAEI 57
Query: 73 K-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAA 109
+ R + +D PGH + M+ GA+ MDGAILV +A
Sbjct: 58 RRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAAN 117
Query: 110 D-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDI 168
+ P PQTREH++ + +G I++ NK ++ +
Sbjct: 118 EPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV---AENA 174
Query: 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT 228
PII SA L +I L KA++ +IPTP R + + V F ++ GT
Sbjct: 175 PIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGT 224
Query: 229 --------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVEMFRKLLDQ 270
V+ G + +G ++VG+E+EI G+ + + T ++ + +++
Sbjct: 225 PPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEE 284
Query: 271 GQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 303
G +G+ GTK + D+ G V+ KPG + P
Sbjct: 285 AYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPP 320
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 145/339 (42%), Gaps = 77/339 (22%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
+N+G +GHVDHGKTTLT A+ V + D EE RGITI + E
Sbjct: 11 VNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAEI 57
Query: 73 K-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAA 109
+ R + +D PGH + M+ GA+ MDGAILV +A
Sbjct: 58 RRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAAN 117
Query: 110 D-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDI 168
+ P PQTREH++ + +G I++ NK ++ +
Sbjct: 118 EPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV---AENA 174
Query: 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT 228
PII SA L +I L KA++ +IPTP R + + V F ++ GT
Sbjct: 175 PIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGT 224
Query: 229 --------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVEMFRKLLDQ 270
V+ G + +G ++VG+E+EI G+ + + T ++ + +++
Sbjct: 225 PPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEE 284
Query: 271 GQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 303
G +G+ GTK + D+ G V+ KPG + P
Sbjct: 285 AYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPP 320
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 125/273 (45%), Gaps = 38/273 (13%)
Query: 6 FERT--KPHINVGTIGHVDHGKTTLTAAIATVLS-------KKFGGEAK-------SYDQ 49
FE++ KP +++ GHVD GK+T+ I L +K EA SY
Sbjct: 169 FEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAW 228
Query: 50 I-DAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSA 108
+ D EE+ARG+T++ A +E+ + Y D PGH D+I MI GA+ D A+LV +
Sbjct: 229 LLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDS 288
Query: 109 ADGPMP-------QTREHILLARQVGVPYIVVFLNKADMXXXXXX--XXXXXXXXXXXXN 159
+ QTREH L R +G+ IVV +NK D+
Sbjct: 289 SQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIK 348
Query: 160 KYEFPGND---IPIIKGSAKLALEGDTGPLGEQ----SILSLSKALDTYIPTPNRAIDGA 212
F ++ +PI S ++ D+ L + ++LS ALD +P P +
Sbjct: 349 MVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLS---ALDQLVP-PEKPYRKP 404
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 245
L ++DV+ S R VTGRVE G V+V + L
Sbjct: 405 LRLSIDDVYR-SPRSVTVTGRVEAGNVQVNQVL 436
>pdb|2KVQ|G Chain G, Solution Structure Of Nuse:nusg-Ctd Complex
Length = 63
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 52/58 (89%)
Query: 535 RPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 592
RPK L++ E+VR+ DGPF DF+G +EEV+YEKSR++VSV+IFGRATPVEL+F+QVEK
Sbjct: 5 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 62
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 140/339 (41%), Gaps = 77/339 (22%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
+N+G +GHVDHGKTTLT A+ V + D EE RGITI + E
Sbjct: 11 VNIGXVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAEI 57
Query: 73 K-----------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAA 109
+ R + +D PGH + GA+ DGAILV +A
Sbjct: 58 RRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAAN 117
Query: 110 D-GPMPQTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDI 168
+ P PQTREH+ + +G I++ NK ++ +
Sbjct: 118 EPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV---AENA 174
Query: 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGT 228
PII SA L +I L KA++ +IPTP R + V F ++ GT
Sbjct: 175 PIIPISA----------LHGANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGT 224
Query: 229 --------VVTGRVERGIVRVGEELEI-IGIK---------DTVKTTCTGVEMFRKLLDQ 270
V+ G + +G ++VG+E+EI G+ + + T ++ + +++
Sbjct: 225 PPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEE 284
Query: 271 GQAGDNIGLLLRGTK------REDVERGQVLAKPGSIKP 303
G +G+ GTK + D+ G V+ KPG + P
Sbjct: 285 AYPGGLVGV---GTKLDPYLTKGDLXAGNVVGKPGKLPP 320
>pdb|1NZ8|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
N-Terminal (Ngn) Domain From Thermus Thermophilus
Length = 119
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 421 WYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKK-NQKSVIKKRFFPG 479
WY +H+ G E+ + L +RI G+Q K ++L+PTEE+V++++ +K V++K+ FPG
Sbjct: 4 WYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPG 63
Query: 480 YVLIEMEMTD-----ESWHLVKNTKKVTGFIGGKSNRPTP 514
Y+ I+M++ D E+W +V+ T +TGF+G RP P
Sbjct: 64 YLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGA-GMRPVP 102
>pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group P2(1)
pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
Substance G (Nusg), Space Group I222
pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1)
Length = 248
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query: 465 KKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKKV--TGFIGGKSNRPTPXXXXXXXX 522
K K V+ + FPGY+LI+ M D+ ++ T V +GGK P P
Sbjct: 123 KTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGK---PVPLKEEEVQN 179
Query: 523 XXXXXXXGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATP 582
GV KP K+ ++ + VR+ +GPF +F+G +EEV+ EK ++ V ++IFGR TP
Sbjct: 180 ILNQIKRGV-KPS-KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTP 237
Query: 583 VELEFNQVEKI 593
VEL+F+QVEKI
Sbjct: 238 VELDFDQVEKI 248
>pdb|2XHC|A Chain A, Crystal Structure Of Thermotoga Maritima N-utilization
Substance G (nusg)
Length = 352
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 473 KKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIG-GKSNRPTPXXXXXXXXXXXXXXXGV 531
+++ FPGYV +EM M DE+++ V++ V GF+ G P
Sbjct: 228 RRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYE 287
Query: 532 EKPRP---KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFN 588
EK +P ++ +++ ++V+I GPF DF+G I+E++ E+ ++V+VTIFGR TPV L +
Sbjct: 288 EKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVS 347
Query: 589 QVEKI 593
+VEKI
Sbjct: 348 EVEKI 352
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 418 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVD 463
KK+WY++ + SG E+ V+ + +++ G++ GRI++P E ++D
Sbjct: 2 KKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLD 47
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 139/332 (41%), Gaps = 50/332 (15%)
Query: 11 PHINVGTIGHVDHGKTTLTAAIATVLS-------KKFGGEAKSYDQ--------IDAAPE 55
PH++ +GHVD GK+TL + L+ +K E+++ + +D E
Sbjct: 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNE 225
Query: 56 EKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP- 114
E+ RG+T++ + T ++ VD PGH D++ N I G +Q D AIL +
Sbjct: 226 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 285
Query: 115 ------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXX----XXNKYEFP 164
QT+EH+LLA +G+ +++ +NK D +E
Sbjct: 286 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 345
Query: 165 GNDIPII----KGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAI--DGAF 213
N +PI +G K+ + GP +++S + I N I D F
Sbjct: 346 INWVPISGFSGEGVYKIEYTDEVRQWYNGP----NLMSTLENAAFKISKENEGINKDDPF 401
Query: 214 LLPVEDVF---SISGRGTVVTGRVERGIVRVGEELEII-----GIKDTVKT-TCTGVEMF 264
L V ++ S +V+G++E G ++ GE L I I D ++ + G
Sbjct: 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTN 461
Query: 265 RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296
+ D GD + L LR ED++ G + A
Sbjct: 462 HEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA 493
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 139/332 (41%), Gaps = 50/332 (15%)
Query: 11 PHINVGTIGHVDHGKTTLTAAIATVLS-------KKFGGEAKSYDQ--------IDAAPE 55
PH++ +GHVD GK+TL + L+ +K E+++ + +D E
Sbjct: 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNE 91
Query: 56 EKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP- 114
E+ RG+T++ + T ++ VD PGH D++ N I G +Q D AIL +
Sbjct: 92 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 151
Query: 115 ------QTREHILLARQVGVPYIVVFLNKADMXXXXXXXXXXXXXX----XXXXNKYEFP 164
QT+EH+LLA +G+ +++ +NK D +E
Sbjct: 152 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 211
Query: 165 GNDIPII----KGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAI--DGAF 213
N +PI +G K+ + GP +++S + I N I D F
Sbjct: 212 INWVPISGFSGEGVYKIEYTDEVRQWYNGP----NLMSTLENAAFKISKENEGINKDDPF 267
Query: 214 LLPVEDVF---SISGRGTVVTGRVERGIVRVGEELEII-----GIKDTVKT-TCTGVEMF 264
L V ++ S +V+G++E G ++ GE L I I D ++ + G
Sbjct: 268 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTN 327
Query: 265 RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296
+ D GD + L LR ED++ G + A
Sbjct: 328 HEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA 359
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 13 INVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
IN+G + HVD GKTTLT ++ + + G K + D E+ RGITI T +
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 62
Query: 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130
+ + +D PGH D++ + + +DGAIL+ SA DG QTR R++G+P
Sbjct: 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT 122
Query: 131 IVVFLNKAD 139
I F+NK D
Sbjct: 123 I-FFINKID 130
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 11 PHINVGTIGHVDHGKTTLTAAIATVL--------------SKKFGGEAKSYDQI-DAAPE 55
PH++ +GHVD GK+TL + L S+ G + + I D E
Sbjct: 32 PHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNE 91
Query: 56 EKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP- 114
E+ RG+T++ + T ++ VD PGH D++ N I G +Q D AIL +
Sbjct: 92 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFES 151
Query: 115 ------QTREHILLARQVGVPYIVVFLNKAD 139
QT+EH LLA +G+ +++ NK D
Sbjct: 152 GFDLDGQTKEHXLLASSLGIHNLIIAXNKXD 182
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 17 TIGHVDHGKTTLTAAIA--------------TVLSKKFGGEAKSYDQ---IDAAPEEKAR 59
T G+VD GK+TL + T SKK G D +D E+ +
Sbjct: 29 TCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 88
Query: 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREH 119
GITI+ A+ + T R + D PGH Y +N TGA+ D AI++ A G QTR H
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRH 148
Query: 120 ILLARQVGVPYIVVFLNKADM 140
+A +G+ +IVV +NK D+
Sbjct: 149 SYIASLLGIKHIVVAINKXDL 169
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/37 (81%), Positives = 34/37 (91%)
Query: 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK 45
TKPH+NVGTIGHVDHGKTTLTAAI TVL+K +GG A+
Sbjct: 1 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAR 37
>pdb|1NZ9|A Chain A, Solution Structure Of The N-Utilisation Substance G (Nusg)
C-Terminal (Ngc) Domain From Thermus Thermophilus
Length = 58
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 537 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 592
++ ++ + VR+ GPF DF+G + E+N E+ +V+V VTIFGR TPVEL+F+QV K
Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 4 SKFERTKP---HINVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKA 58
S RT P + N+G HVD GKTT T + T ++ K G D +E+
Sbjct: 2 SHMARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQE 61
Query: 59 RGITINTAHIEYETKARHYAH-------VDCPGHADYIKNMITGAAQMDGAILVCSAADG 111
RGITI +A + K + +D PGH D+ + +DGA++V G
Sbjct: 62 RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG 121
Query: 112 PMPQTREHILLARQVGVPYIVVFLNKAD 139
PQ+ A + GVP I V++NK D
Sbjct: 122 VEPQSETVWRQANKYGVPRI-VYVNKMD 148
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G I H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D+ + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74
V +GHVDHGKTTL AI + E++A GIT + +
Sbjct: 11 VTIMGHVDHGKTTLLDAI----------------RHSKVTEQEAGGITQHIGAYQVTVND 54
Query: 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVF 134
+ +D PGH + GA D ILV +A DG MPQT E I A+ VP I+V
Sbjct: 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVA 113
Query: 135 LNKAD 139
+NK D
Sbjct: 114 INKMD 118
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 8 RTKP---HINVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKARGIT 62
RT P + N+G H+D GKTT T I T ++ K G +D +E+ RGIT
Sbjct: 3 RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 62
Query: 63 INTAHIE--YETKARHYAH-----VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ 115
I +A + A+ Y +D PGH D+ + +DGA++V A G PQ
Sbjct: 63 ITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ 122
Query: 116 TREHILLARQVGVPYIVVFLNKAD 139
+ A + VP I F+NK D
Sbjct: 123 SETVWRQANKYKVPRI-AFVNKMD 145
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 8 RTKP---HINVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKSYDQIDAAPEEKARGIT 62
RT P + N+G H+D GKTT T I T ++ K G +D +E+ RGIT
Sbjct: 2 RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 61
Query: 63 INTAHIE--YETKARHYAH-----VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ 115
I +A + A+ Y +D PGH D+ + +DGA++V A G PQ
Sbjct: 62 ITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ 121
Query: 116 TREHILLARQVGVPYIVVFLNKAD 139
+ A + VP I F+NK D
Sbjct: 122 SETVWRQANKYKVPRI-AFVNKMD 144
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 129/335 (38%), Gaps = 58/335 (17%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGG------EAKSYDQIDAAPEEKARGITINTAH 67
N I H+DHGK+TL+ I + GG EA+ D +D E+ RGITI
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQIC----GGLSDREMEAQVLDSMDL---ERERGITIKAQS 58
Query: 68 IEYETKAR-----HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILL 122
+ + KA +D PGH D+ + A +GA+LV A G QT +
Sbjct: 59 VTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118
Query: 123 ARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGD 182
A ++ + +V LNK D+ DI I + +
Sbjct: 119 AMEMDLE-VVPVLNKIDLPAADPERVAEEI-------------EDIVGIDATDAVRCSAK 164
Query: 183 TGPLGEQSILS-LSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
TG +G Q +L L + + P + + D + + G V R++ G +R
Sbjct: 165 TG-VGVQDVLERLVRDIPPPEGDPEGPLQALII----DSWFDNYLGVVSLIRIKNGTLRK 219
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLL-RGTKREDVERGQVLAKPGS 300
G D VK TG Q D +G+ + R +++ G+V +
Sbjct: 220 G---------DKVKVMSTG---------QTYNADRLGIFTPKQVDRTELKCGEVGWLVCA 261
Query: 301 IKP-HKHFTGEIYALSKDEGGRHTPFFSNYRPQFY 334
IK H G+ L+++ + P F +PQ Y
Sbjct: 262 IKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVY 296
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 129/335 (38%), Gaps = 58/335 (17%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGG------EAKSYDQIDAAPEEKARGITINTAH 67
N I H+DHGK+TL+ I + GG EA+ D +D E+ RGITI
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQIC----GGLSDREMEAQVLDSMDL---ERERGITIKAQS 58
Query: 68 IEYETKAR-----HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILL 122
+ + KA +D PGH D+ + A +GA+LV A G QT +
Sbjct: 59 VTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118
Query: 123 ARQVGVPYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGD 182
A ++ + +V LNK D+ DI I + +
Sbjct: 119 AMEMDLE-VVPVLNKIDLPAADPERVAEEI-------------EDIVGIDATDAVRCSAK 164
Query: 183 TGPLGEQSILS-LSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241
TG +G Q +L L + + P + + D + + G V R++ G +R
Sbjct: 165 TG-VGVQDVLERLVRDIPPPEGDPEGPLQALII----DSWFDNYLGVVSLIRIKNGTLRK 219
Query: 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLL-RGTKREDVERGQVLAKPGS 300
G D VK TG Q D +G+ + R +++ G+V +
Sbjct: 220 G---------DKVKVMSTG---------QTYNADRLGIFTPKQVDRTELKCGEVGWLVCA 261
Query: 301 IKP-HKHFTGEIYALSKDEGGRHTPFFSNYRPQFY 334
IK H G+ L+++ + P F +PQ Y
Sbjct: 262 IKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVY 296
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G + H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D+ + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 96/229 (41%), Gaps = 28/229 (12%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETK 73
V +GHVDHGKTTL + Q+ A +A GIT + A +
Sbjct: 7 VTIMGHVDHGKTTLLDKLRKT-------------QVAAM---EAGGITQHIGAFLVSLPS 50
Query: 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVV 133
+D PGHA + G D ILV +A DG M QT E I A+ VP IV+
Sbjct: 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVL 109
Query: 134 FLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILS 193
+NK D E G D+ + S AL G+ ++ ++
Sbjct: 110 AINKCDKAEADPEKVKKELLAYDVV--CEDYGGDVQAVHVS---ALTGENMMALAEATIA 164
Query: 194 LSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVG 242
L++ L+ P A++G + + F+ GRG V T ++RG +R G
Sbjct: 165 LAEMLELK-ADPTGAVEGTVI----ESFTDKGRGPVTTAIIQRGTLRKG 208
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G I H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITI 63
E+T+ N+G + H+D GKTT T I + K G + Q+D +E+ RGITI
Sbjct: 7 LEKTR---NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 64 NTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLA 123
+A + +D PGH D + +DGA+ V A G PQT A
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 124 RQVGVPYIVVFLNKAD 139
GVP I VF+NK D
Sbjct: 124 TTYGVPRI-VFVNKMD 138
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I + K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAI----------ATVLSKKFGGEAKSYDQID 51
A S ++T I H D GKTTLT + T+ S+K A S D
Sbjct: 3 AXSVEKQTAXRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATS----D 58
Query: 52 AAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG 111
EK RGI++ T+ ++ K +D PGHAD+ ++ +D A+ V AA G
Sbjct: 59 WXELEKQRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKG 118
Query: 112 PMPQTREHILLARQVGVPYIVVFLNKAD 139
P+T + + R P I F+NK D
Sbjct: 119 VEPRTIKLXEVCRLRHTP-IXTFINKXD 145
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 18 IGHVDHGKTTLTAAIATVLSKKFGG-----------EAKSYDQIDAAPEEKARGITINTA 66
I H D GKTTLT + FGG +A + D E+ RGI++ T+
Sbjct: 37 ISHPDAGKTTLTEKLLL-----FGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTS 91
Query: 67 HIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV 126
+++ + R +D PGH D+ ++ +D A++V AA G QTR+ + + R
Sbjct: 92 VMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR 151
Query: 127 GVPYIVVFLNKAD 139
P ++ F+NK D
Sbjct: 152 ATP-VMTFVNKMD 163
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSK--KFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+ H+D GKTT T I + K G + +D +E+ RGITI A
Sbjct: 14 NIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKAD 139
F NK D
Sbjct: 134 -AFANKMD 140
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74
V +GHVDHGKT+L I + +K GEA GIT + ET+
Sbjct: 7 VTIMGHVDHGKTSLLEYIRS--TKVASGEAG--------------GITQHIGAYHVETEN 50
Query: 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI 120
+D PGHA + GA D +LV +A DG MPQT E I
Sbjct: 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 18 IGHVDHGKTTLT-------AAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
I H D GKTT+T AI T + K G + + + D EK RGI+I T+ +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVK-GRGSNQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130
+D PGH D+ ++ +D ++V AA G +TR+ + + R P
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP- 136
Query: 131 IVVFLNKAD 139
I+ F+NK D
Sbjct: 137 ILTFMNKLD 145
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 27/147 (18%)
Query: 14 NVGTIGHVDHGKTTLTAAI---ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
N+ I HVDHGK+TLT ++ A ++S GEA+ D +E+ RGITI + I
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF---TDTRKDEQERGITIKSTAISL 77
Query: 71 ----------ETKARHYAH------VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
E K + + +D PGH D+ + DGA++V +G
Sbjct: 78 YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV 137
Query: 115 QTREHILLARQVGVPYI--VVFLNKAD 139
QT E +L RQ I VV +NK D
Sbjct: 138 QT-ETVL--RQALGERIKPVVVINKVD 161
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 27/147 (18%)
Query: 14 NVGTIGHVDHGKTTLTAAI---ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
N+ I HVDHGK+TLT ++ A ++S GEA+ D +E+ RGITI + I
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF---TDTRKDEQERGITIKSTAISL 77
Query: 71 ----------ETKARHYAH------VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
E K + + +D PGH D+ + DGA++V +G
Sbjct: 78 YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV 137
Query: 115 QTREHILLARQVGVPYI--VVFLNKAD 139
QT E +L RQ I VV +NK D
Sbjct: 138 QT-ETVL--RQALGERIKPVVVINKVD 161
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 18 IGHVDHGKTTLT-------AAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
I H D GKTT+T AI T + K G + + + D EK RGI+I T+ +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVK-GRGSNQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130
+D PGH D+ ++ +D ++V AA G +TR+ + + R P
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP- 136
Query: 131 IVVFLNKAD 139
I+ F+NK D
Sbjct: 137 ILTFMNKLD 145
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I
Region Fitted Into The Cryo-Em Map Of The
Eef2.80s.Alf4.Gdp Complex
Length = 46
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 21 VDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARGITINT 65
VDHGKTTLTAA+ V + + E K Y ID APEE+ARGITINT
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINT 46
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 45/278 (16%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
N I HVDHGK+TL + + K +D E+ RGIT+ + K
Sbjct: 8 NFCIIAHVDHGKSTLADRLLE-YTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYK 66
Query: 74 AR----HYAH-VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV 128
A+ + H +D PGH D+ + A +GA+L+ A+ G QT + A + +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL 126
Query: 129 PYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGE 188
I V NK + P D+ +K + L D E
Sbjct: 127 VIIPVI------------------------NKIDLPSADVDRVKKQIEEVLGLDP----E 158
Query: 189 QSILSLSK----------ALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238
++IL+ +K A+ IP P + D + RG V R+ G
Sbjct: 159 EAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGE 218
Query: 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKL-LDQGQAGD 275
V+ G+++ ++ + T G + + D+ AGD
Sbjct: 219 VKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGD 256
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 105/278 (37%), Gaps = 45/278 (16%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
N I HVDHGK+TL + + K +D E+ RGIT+ + K
Sbjct: 8 NFCIIAHVDHGKSTLADRLLE-YTGAISEREKREQLLDTLDVERERGITVKXQAVRXFYK 66
Query: 74 AR----HYAH-VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV 128
A+ + H +D PGH D+ + A +GA+L+ A+ G QT + A + +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL 126
Query: 129 PYIVVFLNKADMXXXXXXXXXXXXXXXXXXNKYEFPGNDIPIIKGSAKLALEGDTGPLGE 188
I V NK + P D+ +K + L D E
Sbjct: 127 VIIPVI------------------------NKIDLPSADVDRVKKQIEEVLGLDP----E 158
Query: 189 QSILSLSK----------ALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238
++IL+ +K A+ IP P + D + RG V R+ G
Sbjct: 159 EAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGE 218
Query: 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKL-LDQGQAGD 275
V+ G+++ + + T G + + D+ AGD
Sbjct: 219 VKPGDKIXLXSTGKEYEVTEVGAQTPKXTKFDKLSAGD 256
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 15 VGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGIT---INTAHIE 69
V +GHVDHGKTTL I + V S++ GG + + P + GI + I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI-PXDVIEGICGDFLKKFSIR 66
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
+ +D PGH + G A D AIL+ +G PQT+E + + R P
Sbjct: 67 ETLPGLFF--IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTP 124
Query: 130 YIVVFLNKAD 139
+ VV NK D
Sbjct: 125 F-VVAANKID 133
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 15 VGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGIT---INTAHIE 69
V +GHVDHGKTTL I + V S++ GG + + P + GI + I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI-PMDVIEGICGDFLKKFSIR 66
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
+ +D PGH + G A D AIL+ +G PQT+E + + R P
Sbjct: 67 ETLPGLFF--IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP 124
Query: 130 YIVVFLNKAD 139
+ VV NK D
Sbjct: 125 F-VVAANKID 133
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 14 NVGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
V +GH GKTTLT A+ T ++ G + D PE K T+ T
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL 70
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
+ +D PG+ D++ + D A++ SA G T +A ++G+P +
Sbjct: 71 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 130
Query: 132 VV 133
VV
Sbjct: 131 VV 132
>pdb|2P8W|S Chain S, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|2P8X|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Z|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
Length = 35
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 43 EAKSYDQIDAAPEEKARGITINTAHIE 69
E K Y ID APEE+ARGITINTAH+E
Sbjct: 9 EVKDYGDIDKAPEERARGITINTAHVE 35
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
N+G H+D GKTT T I + I + T K
Sbjct: 9 NIGIAAHIDAGKTTTTERILYYTGR----------------------IAVTTCF----WK 42
Query: 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVV 133
+D PGH D+ + +DGAI+V ++ G PQ+ A + VP I
Sbjct: 43 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 101
Query: 134 FLNKAD 139
F NK D
Sbjct: 102 FANKMD 107
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDN 276
++ F+++G+G VV G V++GI + ++ +I + ++ ++ +D AG
Sbjct: 197 IDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEI--RSIQSHDVDIDSAPAGTR 254
Query: 277 IGLLLRGTKREDVERGQVLA 296
+G L+ + +D+ERG +++
Sbjct: 255 VGXRLKNVQAKDIERGFIIS 274
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAG 274
LP+ D + GTVV G++E G + G++L ++ K V+ G+ D G
Sbjct: 9 LPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVL--GILSDDVETDTVAPG 64
Query: 275 DNIGLLLRGTKREDVERGQVLAKPGSI 301
+N+ + L+G + E++ G +L P ++
Sbjct: 65 ENLKIRLKGIEEEEILPGFILCDPNNL 91
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 272
F++P+ + GT++ G++E G ++ + ++ I T++ T E + +
Sbjct: 8 FIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE-ISSSI 64
Query: 273 AGDNIGLLLRGTKREDVERGQVL 295
GD + L +RG DV+ G VL
Sbjct: 65 CGDQVRLRVRG-DDSDVQTGYVL 86
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 366 INPIAMEEGLRFAIREGVQQFIQDNLLTKEIVNSNKINIDK-GKEYIERSINNKKRWYVI 424
I+P + G R A+RE ++ FI + L T ++D GKE + +I
Sbjct: 120 IHPTTIITGFRVALREAIR-FINEVLST---------SVDTLGKETLINIAKTSMSSKII 169
Query: 425 HSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVL 482
+ S N+ +++ + + Q G I P + + +K + KS + PGY L
Sbjct: 170 GADSDFFSNM---VVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYAL 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,028,607
Number of Sequences: 62578
Number of extensions: 719481
Number of successful extensions: 2054
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1758
Number of HSP's gapped (non-prelim): 136
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)